Citrus Sinensis ID: 000191
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1888 | 2.2.26 [Sep-21-2011] | |||||||
| F4J5S1 | 1407 | Clustered mitochondria pr | no | no | 0.228 | 0.306 | 0.376 | 4e-89 | |
| O15818 | 1320 | Clustered mitochondria pr | yes | no | 0.231 | 0.331 | 0.305 | 3e-56 | |
| B0W2S0 | 1377 | Clustered mitochondria pr | N/A | no | 0.478 | 0.656 | 0.237 | 4e-56 | |
| Q17N71 | 1442 | Clustered mitochondria pr | N/A | no | 0.241 | 0.316 | 0.270 | 6e-45 | |
| B4GAM1 | 1435 | Protein clueless OS=Droso | N/A | no | 0.221 | 0.291 | 0.259 | 4e-44 | |
| Q291J5 | 1435 | Protein clueless OS=Droso | yes | no | 0.221 | 0.291 | 0.259 | 2e-43 | |
| A6R8I2 | 1237 | Clustered mitochondria pr | N/A | no | 0.528 | 0.805 | 0.219 | 6e-43 | |
| A1ZAB5 | 1448 | Protein clueless OS=Droso | yes | no | 0.247 | 0.322 | 0.238 | 1e-42 | |
| B3MIW0 | 1450 | Protein clueless OS=Droso | N/A | no | 0.242 | 0.315 | 0.246 | 1e-42 | |
| B3NPV8 | 1452 | Protein clueless OS=Droso | N/A | no | 0.242 | 0.314 | 0.243 | 2e-42 |
| >sp|F4J5S1|CLU_ARATH Clustered mitochondria protein OS=Arabidopsis thaliana GN=FMT PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 331 bits (848), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 178/473 (37%), Positives = 271/473 (57%), Gaps = 42/473 (8%)
Query: 695 EELIDLSHNYYVEVALPKLVTDFGSLELSPVDGRTLTDFMHTRGLQMRSLGHVVKLSEKL 754
EE + +Y V+V LPK + D +LE+SP+DG+TLT+ +H G+ +R +G V + L
Sbjct: 787 EENVKKVSSYLVDVVLPKFIEDLCTLEVSPMDGQTLTEALHAHGVNVRYIGRVANGVKHL 846
Query: 755 SHVQSLCIHEMIVRAFKHIIQAVISAVGNTQRMAVSIAAALNLMLGVHESDGLNKSHNVH 814
H+ LC++E+ VR+ KHI++ ++ + + + +++ LN G +++ G S N
Sbjct: 847 PHLWDLCLNEITVRSAKHILKDILRDIED-HDIGSAVSHFLNCFFGNYQTAGGKASANSS 905
Query: 815 P-----------------------------------------LVWRWLELFLMKRYEWDL 833
++W ++ F +YE++L
Sbjct: 906 TAKNQKKFFGADQPITKKGQGRGKGKASSKKSFSSYMMVDSNILWSDIQEFAKAKYEFEL 965
Query: 834 NGLNFKDVRKFAILRGLCHKVGIELVSRDFDMDSPSPFRKIDVVSLVPVHKQAACSSADG 893
L+ +K ++LR LC KVG+ + +R +D + +PF D++ L PV K + ++
Sbjct: 966 PELSRTTAKKVSVLRNLCQKVGVSIAARKYDFSANTPFETSDILDLRPVIKHSVPVCSEA 1025
Query: 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQ 953
+ L+E K L +G L ++ T+ ++A + L V GP HR A LA+VLYH GD
Sbjct: 1026 KDLVEMGKVQLAEGMLSESYTFFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAG 1085
Query: 954 ATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 1013
A + Q K L INER LGLDHPDT SYG++A+FY+ L TELAL+ + RAL LL L+ GP
Sbjct: 1086 AIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALQNMGRALLLLGLSSGP 1145
Query: 1014 SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL 1073
HP+ AAT+INVAMM + +G + ALRYL +ALK N+RLLGP+HIQTA YHA+AIA +
Sbjct: 1146 DHPDVAATFINVAMMYQDMGKMDTALRYLQEALKKNERLLGPEHIQTAVCYHALAIAFNC 1205
Query: 1074 MEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNG 1126
M A+ LS QHE+ T IL +LG DD RT+D+ W++ F+ + + + G
Sbjct: 1206 MGAFKLSHQHEKKTYDILVKQLGDDDSRTRDSLNWMKTFKMRELQMTAQKQKG 1258
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Involved in proper cytoplasmic distribution of mitochondria. Arabidopsis thaliana (taxid: 3702) |
| >sp|O15818|CLU_DICDI Clustered mitochondria protein homolog OS=Dictyostelium discoideum GN=clua PE=1 SV=2 | Back alignment and function description |
|---|
Score = 221 bits (564), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 148/485 (30%), Positives = 244/485 (50%), Gaps = 47/485 (9%)
Query: 708 VALPKLVTDFGSLELSPVDGRTLTDFMHTRGLQMRSLGHVVK-LSEKLSHVQSLCIHEMI 766
+ +P+L+ D ++PVDG+TLT MH RG+ MR LG++ K S + +Q L +EM+
Sbjct: 756 ILIPRLIEDLMLFNVAPVDGQTLTQVMHVRGINMRYLGYIAKNESANVPFIQDLLFNEMV 815
Query: 767 VRAFKHIIQAVISAVGNTQRMAVSIAAALNLMLGVHESDGLN-----------KSHNVHP 815
RA KH ++ + N MA SI+ LN LG E+ ++ KS ++
Sbjct: 816 SRAAKHCFNRLLRST-NASDMAHSISHFLNCFLGT-ETGSVSADEKSKKAKQIKSSAINE 873
Query: 816 L----VWRWLELFLMKRYEWDLNGLNFKDVRKFAILRGLCHKVGIELVSRDFDMDSPSPF 871
L +W + + ++++++ + + +LR +C K+GI+++++D++ + +PF
Sbjct: 874 LTQGKLWSEIAQLVSSKFDFEIPTHSVPMESRLIVLRCICLKMGIQILAKDYNFTTDAPF 933
Query: 872 RKIDVVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYH 931
D+V L P+ K S DG LLE+ KT ++ K E A +ALA V GP H
Sbjct: 934 SPEDIVDLFPIVKHVNPRSTDGLDLLEAGKTFFNQRKYELATELLGEALAIYHQVHGPIH 993
Query: 932 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQ 991
++ LA++ Y ++ A YQ+ AL I E+ GLDH +T+++Y LAVF R
Sbjct: 994 PDAGACFTHLAMLAYQNEQYDLAIEYQKNALVITEKTAGLDHHETVQAYTTLAVFCQRSG 1053
Query: 992 HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051
++ Y+K LYL L G +P A+ Y +A + E +AL +L + LK +
Sbjct: 1054 RYNESIGYMKHVLYLTDLLGGEYNPERASIYTAIAAILEDTERFDLALEFLKQTLKHQEF 1113
Query: 1052 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY 1111
L PDH+ + +YH +AI + + S+ H++ + IL +LG RT+++ LE+
Sbjct: 1114 LFTPDHLMCSTTYHKMAIVCARATNFDDSIIHQKKSTDILEKELGEAHPRTKES---LEF 1170
Query: 1112 F--------ESKAF--------EQQEAARNGTRKPDASIASKGHL----------SVSDL 1145
+ + K F EQ E AR K D S+ + SVS+L
Sbjct: 1171 YTGLSQTANQIKLFKQHQALKAEQDELARLQKEKADQFKKSQPRVSAMPPSLENGSVSEL 1230
Query: 1146 LDYIN 1150
L+YIN
Sbjct: 1231 LNYIN 1235
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Dictyostelium discoideum (taxid: 44689) |
| >sp|B0W2S0|CLU_CULQU Clustered mitochondria protein homolog OS=Culex quinquefasciatus GN=CPIJ001445 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (564), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 252/1061 (23%), Positives = 436/1061 (41%), Gaps = 157/1061 (14%)
Query: 219 LLSLDVKLCNGKMVNVEACRKGFY-----------SVGKQRILCHNIVDLLGQLSRAFDN 267
L+ L V K ++ AC +GFY LCH+++DLL Q+S F
Sbjct: 254 LMYLYVVTMEDKRFHISACPRGFYINQSTDDTFEPRPDNPSYLCHSLIDLLSQISPTFRR 313
Query: 268 AYNELMNAFSERNKFGNLPYGFRANTWLIPPIAAQSPSVFPPLPAEDEAWGGNGG----- 322
+ ++ ++R+ F + ++ TW P + + AED G
Sbjct: 314 CFAQMQKKRTQRHPFERVATPYQVYTWSAPTL----DHTIDAIRAEDTFSSKLGYEEHIP 369
Query: 323 GLGRDGKSDLIPWANEFLFVASMPCKTAEERQIRDRKAFLLHNLFVDVAIFRAIKAVHHV 382
G RD W E +P +T ER +R+R F +H+ FV A A+ +
Sbjct: 370 GQTRD-------WNEELQTTRELPRETLPERLLRERAIFKVHSDFVTAATRGAMAVID-- 420
Query: 383 MGKPELIYPSNCKILYTEIIGGLRIAIMKDASNACCKVDTKIDGSQATGVDKNNLVE-RN 441
G I P + I + ++ D D + G D V RN
Sbjct: 421 -GNVMAINPGEDAKMQMFIWNNIFFSLGFDVR----------DHYKELGGDAAAFVAPRN 469
Query: 442 LLKGITADENTAAHDVATLGVVNVRYCGYIAVVK-----VQERENKKVGPLFQSIELEQP 496
L G+ + TLG V + Y GY + + ERE ++ ++ SI+ +
Sbjct: 470 DLHGVRVYSAVDVEGLYTLGTVVIDYRGYRVTAQSIIPGILEREQEQ-SVVYGSIDFGKT 528
Query: 497 ----EGGANALNINSLRLLIHETTTLEDNKPAPNL-QNLEREEL--NASQMFVERLL--- 546
E LN L I+ + L D++ L ++E + + N + ++ LL
Sbjct: 529 VLSHEKYLELLNNAGKHLKIYPHSVLNDDEEEIELCSSVECKGIIGNDGRHYILDLLRTF 588
Query: 547 --EESIAKLEEEKP----------EREH---FVRWELGACWIQ------------HLQDQ 579
+ + KL+EE E +H +R EL +I+ LQ
Sbjct: 589 PPDVNFLKLDEELSKDCKAFGFPIEHKHKLSCLRQELLEAFIESRYLLFIKHAAFQLQQL 648
Query: 580 KNAEKDKKLSKEKAKKLSNEKAKSEMKVEGLGTPLKSLKNNRKKSEGSNHKIHSETLKSQ 639
++ +K K + + E A E + K K + G K+ +E K
Sbjct: 649 NTNKRQQKQDTPKEETKAIEPAAKEDSANNNKEEPAAKKGEPKAATGGVPKVETEEAKKL 708
Query: 640 ADGV-----NGESEKATSASIEARLESRDKENELALKNLLSDEAFARLKESETGLHCKSL 694
+ + ES + + EA +D E ++ + + K
Sbjct: 709 MESLLSSDEKNESREVVKRACEAVGSLKDYEFDIRFNPDVYSPGIQHVDNPNAANSIKKQ 768
Query: 695 EELIDLSHNYYVEVALPKLVTDFGSLELSPVDGRTLTDFMHTRGLQMRSLGHVVKLSEK- 753
++L+ + + V+ +P V D +P+DG TLT+ +H+RG+ +R LG V L K
Sbjct: 769 KQLVKDAAEFLVKHQIPSFVHDCLDHTAAPMDGSTLTETLHSRGINVRYLGKVANLLAKI 828
Query: 754 --LSHVQSLCIHEMIVRAFKHIIQAVISAVGNTQRM--AVSIAAALNLMLGV-----HES 804
L ++ ++ + E+I+RA KHI ++ + NT+ M A +I+ LN L ES
Sbjct: 829 KQLEYLHTIAVSELIIRAAKHIF---VTYMQNTEMMSMAAAISHFLNCFLTTATSVSSES 885
Query: 805 DGLNKS-------------------------------HNVHPLV-----WRWLELFLMKR 828
D L KS +N L+ W ++ L
Sbjct: 886 DVLTKSGSSGKQQRKQNKRTAAGGGKGGKSSFQCTQDNNEWQLLTSKSLWAQIQQELKSY 945
Query: 829 YEWDLNGLNFKD----------VRKFAILRGLCHKVGIELVSRDFDMDSPS--PFRKIDV 876
+++DL D ++K ++LR C K G++++ R+++ ++ + F + D+
Sbjct: 946 WDYDLLPAGTVDSADPVVTHNHLQKISLLRAFCLKTGVQILLREYNFETKNKPTFNENDI 1005
Query: 877 VSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAG 936
V++ PV K ++D + +T + +G +D ++AL L V G H A
Sbjct: 1006 VNVFPVVKHINPRASDAYNFYTTGQTKIQQGYFKDGYDLISEALNLLNNVYGAMHPENAQ 1065
Query: 937 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELA 996
+LA + Y GD +A QQ+A+ ++ER G+DHP T+ Y LA++ + A
Sbjct: 1066 CLRMLARLSYIMGDPQEALAIQQRAVLMSERVNGIDHPYTIAEYAPLALYCFANSQISTA 1125
Query: 997 LKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 1056
LK + RA YL + CG +HP+ A N++++ +G ++LR+L AL N + G
Sbjct: 1126 LKLLYRARYLATIVCGDNHPDIALLDSNISLILHAVGEYELSLRFLEHALALNIKYYGEK 1185
Query: 1057 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKA 1116
++ A SYH +A S M + ++ +E+ T I + +LG +TQ+++ L + +A
Sbjct: 1186 SLKVAVSYHLVARTQSCMGDFRSALNNEKETYAIYKQQLGEAHEKTQESSECLRHLTQQA 1245
Query: 1117 FEQQEAAR----NG---TRKPDASIASKGHLSVSDLLDYIN 1150
Q+ NG T P I SV D+L+ IN
Sbjct: 1246 VVLQKKMNDIYSNGKLTTGLPPIHIQPPSMGSVLDMLNAIN 1286
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Culex quinquefasciatus (taxid: 7176) |
| >sp|Q17N71|CLU_AEDAE Clustered mitochondria protein homolog OS=Aedes aegypti GN=AAEL000794 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 184 bits (467), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 143/528 (27%), Positives = 246/528 (46%), Gaps = 72/528 (13%)
Query: 692 KSLEELIDLSHNYYVEVALPKLVTDFGSLELSPVDGRTLTDFMHTRGLQMRSLGHVVKLS 751
K ++L+ + + V+ +P V D +P+DG TLT+ +H+RG+ +R LG V L
Sbjct: 827 KKQKQLVKDAAEFLVKHQIPSFVHDCLDHTAAPMDGTTLTETLHSRGINVRYLGKVANLL 886
Query: 752 EK---LSHVQSLCIHEMIVRAFKHIIQAVISAVGNTQRM--AVSIAAALNLML------- 799
K L ++ ++ + E+I+RA KHI S + NT+ M A +I+ LN L
Sbjct: 887 AKIKQLEYLHTIAVSELIIRAAKHIF---TSYMQNTEMMSMAAAISHFLNCFLTATTAVS 943
Query: 800 ---GVHESDGLNKS------------------------------HNVHPLV-----WRWL 821
+ ESD L KS +N L+ W +
Sbjct: 944 HSGSLSESDALTKSGSSGGKQQRRQNKRSAGSKGGKPSFQCTQDNNEWQLLTPKSLWSQI 1003
Query: 822 ELFLMKRYEWDLNGLNFKD----------VRKFAILRGLCHKVGIELVSRD--FDMDSPS 869
E L ++++L D ++K ++LR C K G++++ R+ F+M +
Sbjct: 1004 EKELKSYWDYELLPAGAHDSADPVVSHYRLQKISLLRAFCLKTGVQILLREYNFEMKNKP 1063
Query: 870 PFRKIDVVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP 929
F + D+V++ PV K ++D + ++ + +G +D ++AL L V G
Sbjct: 1064 TFGESDIVNVFPVVKHINPRASDAYNFYTTGQSKIQQGYFKDGYDLISEALNLLNNVYGA 1123
Query: 930 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR 989
H A +LA + Y GD +A QQ+A+ ++ER G+DHP T+ Y LA++ +
Sbjct: 1124 MHPENAQCLRMLARLSYIMGDPQEALAIQQRAVLMSERVNGIDHPYTIAEYAPLALYCFA 1183
Query: 990 LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049
ALK + RA YL + CG +HP+ A N++++ +G ++LR+L AL N
Sbjct: 1184 NSQISTALKLLYRARYLATIVCGENHPDIALLDSNISLILHAVGEYELSLRFLEHALALN 1243
Query: 1050 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL 1109
+ G ++ A SYH +A S M + ++ +E+ T I + +LG +TQ+++ L
Sbjct: 1244 IKYYGEKSLKVAVSYHLVARTQSCMGDFRSALNNEKETYAIYKQQLGETHEKTQESSECL 1303
Query: 1110 EYFESKAFEQQEAAR----NG---TRKPDASIASKGHLSVSDLLDYIN 1150
+ +A Q+ NG + P I SV D+L+ IN
Sbjct: 1304 RHLTQQAVVLQKKMNDIYSNGKLTSGLPPIHIQPPSMGSVLDMLNAIN 1351
|
Aedes aegypti (taxid: 7159) |
| >sp|B4GAM1|CLU_DROPE Protein clueless OS=Drosophila persimilis GN=clu PE=3 SV=1 | Back alignment and function description |
|---|
Score = 181 bits (460), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 125/482 (25%), Positives = 225/482 (46%), Gaps = 63/482 (13%)
Query: 697 LIDLSHNYYVEVALPKLVTDFGSLELSPVDGRTLTDFMHTRGLQMRSLGHVVKL---SEK 753
L+ + + V +P V + S P+DG+ LT+ +H+ G+ +R LG V+K +
Sbjct: 839 LVQDAAEFLVVKQIPAFVKEHLSHSSPPIDGQNLTESLHSHGINVRYLGKVIKTLGQMPR 898
Query: 754 LSHVQSLCIHEMIVRAFKHIIQAVISAVGNTQRMAVSIAAALNLMLG------------V 801
+ ++ + + E+IVRA KHI + + + ++V+I+ LN +L +
Sbjct: 899 MDYLYRIAVMELIVRATKHIYYTYMQST-DPMHLSVAISHFLNCLLTNGPINPVVSNDEM 957
Query: 802 HESDGLNKS-HNVH-----------PLV---------------------------WRWLE 822
H+ G N HN H P + W+ +
Sbjct: 958 HKKRGGNGGKHNKHKSSKGGKGQQQPAINQNGGSTTSSSSSANAYDWTLVTPRSLWQQIR 1017
Query: 823 LFLMKRYEWDLN------GLNFKDVRKFAILRGLCHKVGIELVSRDFDMDSPS--PFRKI 874
++WDL+ +N + + +LR C KVGI+++ R+++ DS F
Sbjct: 1018 KESKAYWDWDLDCDSMDSAMNKFGIMRICLLRAFCLKVGIQVLLREYNFDSKHKPTFGDD 1077
Query: 875 DVVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMT 934
D+V++ PV K + ++D + + + +G ++ ++AL L V G H+
Sbjct: 1078 DIVNVFPVVKHISPRASDAYNFYTTGQAKIQQGLFKEGYELISEALNLLNNVFGAMHQEN 1137
Query: 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTE 994
+LA + Y GD A QQ+A+ ++ER G+D+P T+ Y L+++ + H
Sbjct: 1138 GSCLRMLARLSYLLGDAQDALAIQQRAVIMSERVNGIDNPSTILEYTHLSLYSFANGHVG 1197
Query: 995 LALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054
++LK + RA YLL LTCG HP A N++++ LG ++LR++ ALK N + G
Sbjct: 1198 MSLKLLYRARYLLVLTCGEDHPEVALIDSNISLILHALGEYELSLRFIEHALKLNLKYFG 1257
Query: 1055 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES 1114
+ A SYH +A S M + ++ +E+ T I +++LG +T+D+A L
Sbjct: 1258 NKAMHVAVSYHLMARTQSCMGDFRSALNNEKETYSIYKSQLGEKHEKTRDSAECLRLLTQ 1317
Query: 1115 KA 1116
+A
Sbjct: 1318 QA 1319
|
Drosophila persimilis (taxid: 7234) |
| >sp|Q291J5|CLU_DROPS Protein clueless OS=Drosophila pseudoobscura pseudoobscura GN=clu PE=3 SV=2 | Back alignment and function description |
|---|
Score = 179 bits (455), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 125/482 (25%), Positives = 227/482 (47%), Gaps = 63/482 (13%)
Query: 697 LIDLSHNYYVEVALPKLVTDFGSLELSPVDGRTLTDFMHTRGLQMRSLGHVVK-LSE--K 753
L+ + + V +P V + S P+DG+ LT+ +H+ G+ +R LG V+K L + +
Sbjct: 839 LVQDAAEFLVVKQIPAFVKEHLSHSSPPIDGQNLTESLHSHGINVRYLGKVIKALGQMPR 898
Query: 754 LSHVQSLCIHEMIVRAFKHIIQAVISAVGNTQRMAVSIAAALNLMLG------------V 801
+ ++ + + E+IVRA KHI + + + ++V+I+ LN +L +
Sbjct: 899 MDYLYRIAVMELIVRATKHIYYTYMQST-DPMHLSVAISHFLNCLLTNGPINPVVSNDEM 957
Query: 802 HESDGLNKS-HNVH-----------PLV---------------------------WRWLE 822
H+ G N HN H P + W+ +
Sbjct: 958 HKKRGGNGGKHNKHKSSKGGKGQQQPAINQNGGSTTSSSSSANAYDWTLVTPRSLWQQIR 1017
Query: 823 LFLMKRYEWDLN------GLNFKDVRKFAILRGLCHKVGIELVSRDFDMDSPS--PFRKI 874
++WDL+ ++ + + +LR C KVGI+++ R+++ DS F
Sbjct: 1018 KESKAYWDWDLDCDSMDSAMSKFGIMRICLLRAFCLKVGIQVLLREYNFDSKHKPTFGDD 1077
Query: 875 DVVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMT 934
D+V++ PV K + ++D + + + +G ++ ++AL L V G H+
Sbjct: 1078 DIVNVFPVVKHISPRASDAYNFYTTGQAKIQQGLFKEGYELISEALNLLNNVFGAMHQEN 1137
Query: 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTE 994
+LA + Y GD A QQ+A+ ++ER G+D+P T+ Y L+++ + H
Sbjct: 1138 GSCLRMLARLSYLLGDAQDALAIQQRAVIMSERVNGIDNPSTILEYTHLSLYSFANGHVG 1197
Query: 995 LALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054
++LK + RA YLL LTCG HP A N++++ LG ++LR++ ALK N + G
Sbjct: 1198 MSLKLLYRARYLLVLTCGEDHPEVALIDSNISLILHALGEYELSLRFIEHALKLNLKYFG 1257
Query: 1055 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES 1114
+ A SYH +A S M + ++ +E+ T I +++LG +T+D+A L
Sbjct: 1258 NKAMHVAVSYHLMARTQSCMGDFRSALNNEKETYSIYKSQLGEKHEKTRDSAECLRLLTQ 1317
Query: 1115 KA 1116
+A
Sbjct: 1318 QA 1319
|
Drosophila pseudoobscura pseudoobscura (taxid: 46245) |
| >sp|A6R8I2|CLU_AJECN Clustered mitochondria protein homolog OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=CLU1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (450), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 270/1229 (21%), Positives = 480/1229 (39%), Gaps = 232/1229 (18%)
Query: 27 DITVNLPDDTRVILKGIST-DRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVA 85
+I+V LP + I +S+ +++ DVR+ + T T+F L H G R+ D ++++
Sbjct: 3 EISVKLPHEPYNIQVTVSSQEQVQDVRQSIVELPGTFQYTSFHLEH--NGTRINDYIELS 60
Query: 86 ALKPCV----LSLTEEDFDEEGAAAHVRRVLDIVACTTS-----FGPCG-------FDAG 129
+K + L E+ + E+ A HV R+ +++ G C AG
Sbjct: 61 EVKDIQANSEVVLVEDPYTEKEARMHVIRIRELIGAAGDRVDNLHGICAGLSLHDSVAAG 120
Query: 130 KNVPDSKSAKKTTAKNEK--DKQSQPPSSPQSKNSKSSNDVTVDGDGEMSHAFPKLSSFY 187
+ + D+K ++ ++ D P Q+ + A P L
Sbjct: 121 EQLTDTKEGERGVVRDHALVDYDMTAPPVLQTI---------------LPRAQPSLPKTV 165
Query: 188 EFFSLSHLTPPLQFIRKAPKRRVEEISPDDHLLSLDVKLCNGKMVNVEACRKGFYSVGK- 246
+ SLS PP +R+ HLL L V G+ + + GF+ V K
Sbjct: 166 KAISLSPWNPPPYHLRQR-----------GHLLYLQVTTNEGEQHQITSHVSGFF-VNKS 213
Query: 247 -------------QRILCHNIVDLLGQLSRAFDNAYNELMNAFSERNKFGNLPY--GFRA 291
+ H+++ L+ LS +FD ++ L + ++++ P+
Sbjct: 214 SNAKFDPFPRPAPKNYSAHSLLTLISMLSPSFDASFKALQESNNKKDLLTTFPFQNSIPK 273
Query: 292 NTWLIPPIAAQSPSVFPPLPAEDEAWGGNGGGLGRDGKSDLIPWANEFLFVASMPCKTAE 351
N WL+PP ++ + + E N G D L W EF +P +T +
Sbjct: 274 NPWLVPPTSSAVTAHQSDITRSQE----NCLIFGVDNSETLRDWNEEFQSTRELPRETVQ 329
Query: 352 ERQIRDRKAFLLHNLFVDVAIFRAIKAVHHVMGKPELIYPSNCK----ILYTEII----- 402
++ R+R L LF D A AV G+ + P+ K +Y I
Sbjct: 330 DKVSRER---LTSKLFADYNDAAARGAVLVAKGEIAPLNPTEGKDAQIFVYNNIFFSFGA 386
Query: 403 ---------GG---LRIAIMKDASNACCKVDTKIDGSQATG---VD--KNNLVERNLLKG 445
GG R+A+ KD A I G G VD LV ++++ G
Sbjct: 387 DGVGTFASEGGDEAARVAVGKDVVGAKAVNQLDIPGLFTPGTVVVDYLGKRLVGQSIVPG 446
Query: 446 ITADENTAAHDVATLGVVNVRYCGYIAVVKVQERENKKVGPLFQSIELEQPEGGANALNI 505
I H + GV E+K P+F+ +
Sbjct: 447 IFKQREPGEHQIDYGGVEGKEVVA----------EHKDFVPVFEKLSA------------ 484
Query: 506 NSLRLLIHETTTLE----DNKPAPNLQNLEREELNASQMFVERLLEESIAKLE-----EE 556
SLR+ H E D + + + L + + + R+ +A E E
Sbjct: 485 -SLRVKKHPVWDKEGKRHDLEGSVETKGLLGTDGRKYVLDLYRITPLDVAWSEDAEGHEP 543
Query: 557 KPEREHFVRWELGACWIQHLQDQ--KNAEKDKKLSKEKAKKLSNEKAKSEMKVEGLGTPL 614
P R +R EL + ++ Q K + +K +K +A+K +A++E K E L T
Sbjct: 544 YPHRMSVLRLELVELYWRYKMGQYVKAEVQKRKTAKREAEKTKAVEAQNEDKAELLST-- 601
Query: 615 KSLKNNRKKSEGSNHKIHSETLKSQADGVNGESEKATSASIEARLESRDKENELALKNLL 674
EG N + SE + + D ++ ++ D+E E ++
Sbjct: 602 ------SDPGEGENKAVASE--QERVD-ISAFKLALNPDVFSGQVPQTDEEKEEWAQD-- 650
Query: 675 SDEAFARLKESETGLHCKSLEELIDLSHNYYVEVALPKLVTDFGSLELS-PVDGRTLTDF 733
E E C ++ + +P+L+ D ++ P+DG +LT
Sbjct: 651 ---------EKEVRSAC-----------DHLISKVIPELIQDLHDGDVGFPMDGESLTQL 690
Query: 734 MHTRGLQMRSLGHVVKLS----EKLSHVQSLCIHEMIVRAFKHIIQAVISAVGNTQRMAV 789
+H RG+ +R LG + KLS ++L + +L I EM+ R+FKHI + + + A
Sbjct: 691 LHKRGINVRYLGKLAKLSQAKGQRLLALTALLIQEMVSRSFKHIANRYLRYLP-SPFTAS 749
Query: 790 SIAAALNLMLGVHES----------------DGLNKSHNVHPLVWRW-LELFLMKRYEWD 832
++ LN LG + +G V P + +E + R+ ++
Sbjct: 750 CVSHLLNCFLGAEVNSNPRPEIDEELREIYPEGDFSFEKVTPTSLKGDIEKQIKIRFRFN 809
Query: 833 LNGLNFKDVRKFAILRGLCHKVGIELVSRDF----------------------------- 863
L ++ +LR + K+G+++ +R+F
Sbjct: 810 LEPKWTSSLKHLQLLRDISIKLGLQIGAREFAFERSQIKSQEHSPEPSSTHSSQDERGKR 869
Query: 864 ------DMDSPS----------PFRKIDVVSLVPVHKQAACSSADGRQLLESSKTALDKG 907
+ DSPS F D++++VP+ K A+ SA + LE+ + ++ +
Sbjct: 870 KKKKGSNSDSPSRVAASPRPVVTFVPEDILNIVPLVKDASPRSALAEEALEAGRISIMQN 929
Query: 908 KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 967
+ E ++L+ + G H A Y L+++ Y T + A +KA+ + ER
Sbjct: 930 QKEIGQELILESLSLHEQIYGILHPEVAKLYHQLSMLYYQTDEKEAAVELARKAVIVTER 989
Query: 968 ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAM 1027
+G+D DT+ SY +L++F + +T AL Y++ AL L + G HP++ T N A+
Sbjct: 990 TMGVDSADTILSYLNLSLFEHASGNTHTALIYIRHALELWKIIYGSHHPDSITTMNNAAV 1049
Query: 1028 MEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 1087
M + L + ++ +L + L G I TA +A AL+L + +V +
Sbjct: 1050 MLQHLKKYPDSRKWFEASLTVCEGLFGRQSINTATILFQLAQALALDQDSKAAVNRMRDA 1109
Query: 1088 LQILRAKLGPDDLRTQDAAAWLEYFESKA 1116
I +LGP+D T++A +WLE A
Sbjct: 1110 YNIFLNELGPNDRNTKEAESWLEQLTQNA 1138
|
Ajellomyces capsulata (strain NAm1 / WU24) (taxid: 339724) |
| >sp|A1ZAB5|CLU_DROME Protein clueless OS=Drosophila melanogaster GN=clu PE=1 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (448), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 129/541 (23%), Positives = 242/541 (44%), Gaps = 74/541 (13%)
Query: 681 RLKESETGLHCKSLEELIDLSHNYYVEVALPKLVTDFGSLELSPVDGRTLTDFMHTRGLQ 740
R + E G + L+ + + V +P + + S SP+DG++LT+ +H+ G+
Sbjct: 830 RHADGEEGTSLAKQKVLVQEAAEFLVLKQIPAFIKEHMSHSSSPIDGQSLTESLHSHGIN 889
Query: 741 MRSLGHVVKLSE---KLSHVQSLCIHEMIVRAFKHIIQAVISAVGNTQ--RMAVSIAAAL 795
+R LG V+K+ ++ ++ + + E+IVRA KHI + NT+ ++ +I+ L
Sbjct: 890 VRYLGKVIKILSQMPRMDYLHRIAVLELIVRATKHIYYTYMQ---NTEPLHLSAAISHFL 946
Query: 796 NLMLG------------VHESDGLNKSHNVHPL--------------------------- 816
N +L H+ G HN H
Sbjct: 947 NCLLTNGPVNPAVSSEEAHKKRGNGGKHNKHKSSKGGKGQQQQQTTGNQNGSSSGSSNSS 1006
Query: 817 ------------VWRWLELFLMKRYEWDLN------GLNFKDVRKFAILRGLCHKVGIEL 858
+W+ + ++W+L+ ++ + + +++R C KVGI++
Sbjct: 1007 SASDWTLMTPRSLWQQIRKEAKVYWDWELDCDSIETAVSKYGILRISLMRAFCLKVGIQV 1066
Query: 859 VSRDFDMDSPS--PFRKIDVVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYG 916
+ R+++ +S F D+V++ P+ K + + D + + + +G ++
Sbjct: 1067 LLREYNFESKHKPTFGDDDIVNVFPIVKHISPRATDAYNFYTTGQAKIQQGLFKEGYELI 1126
Query: 917 TKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 976
+ AL L V G H+ +LA + Y GD A QQ+A+ ++ER G+DHP T
Sbjct: 1127 SGALNLLNNVFGALHQENGSCLRMLARLSYLLGDAQDALAIQQRAVIMSERVNGMDHPST 1186
Query: 977 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH 1036
+ Y L+++ + H ++LK + RA YL+ L CG HP A N++++ LG
Sbjct: 1187 ILEYTHLSLYSFANGHVGMSLKLLYRARYLMVLICGEDHPEVALIDSNISLILHALGEYE 1246
Query: 1037 VALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 1096
++LR++ ALK N + G + A SYH +A S M + ++ +E+ T +++LG
Sbjct: 1247 LSLRFIEHALKLNLKYFGDKDMHVALSYHLMARTQSCMGDFRSALNNEKETYSFYKSQLG 1306
Query: 1097 PDDLRTQDAAAWLEYFESKAFEQQE-------AARNGTRKPDASIASKGHLSVSDLLDYI 1149
+ +T+D+A L +A Q + + + P I SV D+L+ I
Sbjct: 1307 ENHEKTRDSAECLRLLTQQAVLLQRKMNDIYSSGKLTSDLPPIHITPPSMGSVLDMLNTI 1366
Query: 1150 N 1150
N
Sbjct: 1367 N 1367
|
Drosophila melanogaster (taxid: 7227) |
| >sp|B3MIW0|CLU_DROAN Protein clueless OS=Drosophila ananassae GN=clu PE=3 SV=1 | Back alignment and function description |
|---|
Score = 176 bits (447), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 131/531 (24%), Positives = 241/531 (45%), Gaps = 74/531 (13%)
Query: 691 CKSLEE---LIDLSHNYYVEVALPKLVTDFGSLELSPVDGRTLTDFMHTRGLQMRSLGHV 747
C SL + L+ + + V +P + + + P+DG++LT+ +H+ G+ +R LG V
Sbjct: 839 CSSLAKQKVLVQDAAEFLVVKQIPAFIKEHLAHSSPPIDGQSLTESLHSHGINVRYLGKV 898
Query: 748 VKLSE---KLSHVQSLCIHEMIVRAFKHIIQAVISAVGNTQ--RMAVSIAAALNLMLGV- 801
+KL ++ ++ + + E+IVRA KHI + NT+ ++ +I+ LN +L
Sbjct: 899 IKLLAQMPRMDYLHRIAVLELIVRATKHIYYTYMQ---NTEPLHLSAAISHFLNCLLTTG 955
Query: 802 -----------HESDGLNKSHNVHPL---------------------------------- 816
H+ HN H
Sbjct: 956 PVNPAVSSEEAHKKRSNGNKHNKHKSKGNKQQASGNQNGSSAGSSSGGSSSSSDWTLVTP 1015
Query: 817 --VWRWLELFLMKRYEWDLN------GLNFKDVRKFAILRGLCHKVGIELVSRDFDMDSP 868
+W+ + ++W+L+ ++ + + ++LR C KVGI+++ R+++ +S
Sbjct: 1016 RSLWQQIRREAKSYWDWELDCDSIETAVSKYGILRISLLRAFCLKVGIQVLLREYNFESK 1075
Query: 869 S--PFRKIDVVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAV 926
F D+V++ PV K + + D + + + +G ++ ++AL L V
Sbjct: 1076 HKPTFGDEDIVNVFPVVKHISPRATDAYNFYTTGQAKIQQGMFKEGYELISEALNLLNNV 1135
Query: 927 CGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVF 986
G H+ +LA + Y GD A QQ+A+ ++ER G+DHP T+ Y L+++
Sbjct: 1136 FGAMHQENGSCLRMLARLSYLLGDAQDALAIQQRAVIMSERVNGIDHPSTILEYTHLSLY 1195
Query: 987 YYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKAL 1046
+ H ++LK + RA YL+ L CG HP A N++++ LG ++LR++ AL
Sbjct: 1196 SFANGHVGMSLKLLYRARYLMVLICGEDHPEVALIDSNISLILHALGEYELSLRFIEHAL 1255
Query: 1047 KCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAA 1106
K N + G + A SYH +A S M + ++ +E+ T I ++++G +T+D+A
Sbjct: 1256 KLNIKYFGSKAMHVAFSYHLMARTQSCMGDFRSALNNEKETYSIYKSQVGEKHEKTRDSA 1315
Query: 1107 AWLEYFESKAFEQQ----EAARNG---TRKPDASIASKGHLSVSDLLDYIN 1150
L +A Q + NG + P I SV D+L+ IN
Sbjct: 1316 ECLRLLTQQAVLLQRKMNDIYSNGKLTSDLPPIHITPPSMGSVLDMLNTIN 1366
|
Drosophila ananassae (taxid: 7217) |
| >sp|B3NPV8|CLU_DROER Protein clueless OS=Drosophila erecta GN=clu PE=3 SV=1 | Back alignment and function description |
|---|
Score = 176 bits (446), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 130/534 (24%), Positives = 240/534 (44%), Gaps = 77/534 (14%)
Query: 691 CKSLEE---LIDLSHNYYVEVALPKLVTDFGSLELSPVDGRTLTDFMHTRGLQMRSLGHV 747
C SL + L+ + + V +P V + + P+DG++LT+ +H+ G+ +R LG V
Sbjct: 841 CSSLAKQKVLVQEAAEFLVLKQIPAFVKEHMTHSSPPIDGQSLTESLHSHGINVRYLGKV 900
Query: 748 VKLSE---KLSHVQSLCIHEMIVRAFKHIIQAVISAVGNTQ--RMAVSIAAALNLMLG-- 800
+K+ ++ ++ + + E+IVRA KHI + NT+ ++ +I+ LN +L
Sbjct: 901 IKILNQMPRMDYLHRIAVLELIVRATKHIYYTYMQ---NTEPLHLSAAISHFLNCLLTNG 957
Query: 801 ----------VHESDGLNKSHNVHPL---------------------------------- 816
H+ G HN H
Sbjct: 958 PVNPAVSSEEAHKKRGNGGKHNKHKSSKGGKGQQQQQATGNQNGSSSGSSNGSSVSDWTL 1017
Query: 817 -----VWRWLELFLMKRYEWDLN------GLNFKDVRKFAILRGLCHKVGIELVSRDFDM 865
+W+ + ++W+L+ ++ + + ++LR C KVGI+++ R+++
Sbjct: 1018 MTPRSLWQQIRKEAKVYWDWELDCDSIETAVSKYGILRISLLRAFCLKVGIQVLLREYNF 1077
Query: 866 DSPS--PFRKIDVVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKL 923
+S F D+V++ PV K + + D + + + +G ++ + AL L
Sbjct: 1078 ESKHKPTFGDDDIVNVFPVVKHISPRATDAYNFYTTGQAKIQQGMFKEGYELISGALNLL 1137
Query: 924 VAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 983
V G H+ +LA + Y GD A QQ+A+ ++ER G+DHP T+ Y L
Sbjct: 1138 NNVFGALHQENGSCLRMLARLSYLLGDAQDALAIQQRAVIMSERVNGMDHPSTILEYTHL 1197
Query: 984 AVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLH 1043
+++ + H ++LK + RA YL+ L CG HP A N++++ LG ++LR++
Sbjct: 1198 SLYSFANGHVGMSLKLLYRARYLMVLICGEDHPEVALIDSNISLILHALGEYELSLRFIE 1257
Query: 1044 KALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQ 1103
ALK N + G + A SYH +A S M + ++ +E+ T +++LG + +T+
Sbjct: 1258 HALKLNLKYFGDKAMPVALSYHLMARTQSCMGDFRSALNNEKETYSFYKSQLGENHEKTK 1317
Query: 1104 DAAAWLEYFESKAFEQQE-------AARNGTRKPDASIASKGHLSVSDLLDYIN 1150
D+A L +A Q + + + P I SV D+L+ IN
Sbjct: 1318 DSAECLRLLTQQAVLLQRKMNDIYSSGKLTSDLPPIHITPPSMGSVLDMLNTIN 1371
|
Drosophila erecta (taxid: 7220) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1888 | ||||||
| 255564713 | 1872 | eukaryotic translation initiation factor | 0.984 | 0.993 | 0.700 | 0.0 | |
| 359489732 | 1863 | PREDICTED: protein KIAA0664 homolog [Vit | 0.977 | 0.990 | 0.694 | 0.0 | |
| 356520282 | 1840 | PREDICTED: uncharacterized protein LOC10 | 0.967 | 0.992 | 0.657 | 0.0 | |
| 356560227 | 1846 | PREDICTED: protein TIF31 homolog [Glycin | 0.970 | 0.992 | 0.655 | 0.0 | |
| 449487415 | 1856 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.968 | 0.985 | 0.644 | 0.0 | |
| 449445826 | 1856 | PREDICTED: uncharacterized protein LOC10 | 0.968 | 0.985 | 0.643 | 0.0 | |
| 334182214 | 1787 | tetratricopeptide repeat-containing prot | 0.920 | 0.972 | 0.600 | 0.0 | |
| 42561588 | 1797 | tetratricopeptide repeat-containing prot | 0.920 | 0.967 | 0.597 | 0.0 | |
| 297745448 | 1446 | unnamed protein product [Vitis vinifera] | 0.755 | 0.986 | 0.705 | 0.0 | |
| 297842986 | 1793 | tetratricopeptide repeat-containing prot | 0.921 | 0.970 | 0.595 | 0.0 |
| >gi|255564713|ref|XP_002523351.1| eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis] gi|223537439|gb|EEF39067.1| eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2592 bits (6718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1331/1899 (70%), Positives = 1541/1899 (81%), Gaps = 40/1899 (2%)
Query: 1 MAPRNSRGKAKNEKKKKEEKVLPVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTE 60
MAPRNSRGKAK EKKKK+EKVLPVV DITVNLPD+TR++LKGISTDRIIDVRRLLSVNT+
Sbjct: 1 MAPRNSRGKAKGEKKKKDEKVLPVVTDITVNLPDETRIVLKGISTDRIIDVRRLLSVNTD 60
Query: 61 TCSITNFSLSHEIRGPRLKDAVDVAALKPCVLSLTEEDFDEEGAAAHVRRVLDIVACTTS 120
+C ITNFSLSHE+RGPRLKD VDV+ALKPCVL+LTEED+DEE A AHVRR+LDIVACTT
Sbjct: 61 SCYITNFSLSHEVRGPRLKDTVDVSALKPCVLTLTEEDYDEELAVAHVRRLLDIVACTTW 120
Query: 121 FGP-------CGFDAGKNVPDS--KSAKKTTAKNEKDKQSQPPSSPQSKNSKSSNDVTVD 171
FGP C D+GK V D+ K+AKKT K++ + K S S +V VD
Sbjct: 121 FGPSGSAQDKCKPDSGKKVQDAQDKTAKKTRVKSQSTMTAD-------KQSPLSKEVAVD 173
Query: 172 GDGEMSHAFPKLSSFYEFFSLSHLTPPLQFIRKAPKRRVEEISPDDHLLSLDVKLCNGKM 231
+GEMSH+ PKL SFYEFFSLSHLTPP QFIRKA KR+++EI+ DDHL SLDVKLCNGK+
Sbjct: 174 AEGEMSHSRPKLGSFYEFFSLSHLTPPFQFIRKATKRQIDEIAEDDHLFSLDVKLCNGKL 233
Query: 232 VNVEACRKGFYSVGKQRILCHNIVDLLGQLSRAFDNAYNELMNAFSERNKFGNLPYGFRA 291
V+VEACRKGFY+VGKQRILCH++VDLL QLSRAF+NAY++LM AFSERNKFGN PYGFRA
Sbjct: 234 VHVEACRKGFYNVGKQRILCHDLVDLLRQLSRAFENAYDDLMKAFSERNKFGNFPYGFRA 293
Query: 292 NTWLIPPIAAQSPSVFPPLPAEDEAWGGNGGGLGRDGKSDLIPWANEFLFVASMPCKTAE 351
NTWLIPP AAQSP FP LP EDE WGGNGGGLGRDGKSDLIPWA+EFL++ASMPCKTAE
Sbjct: 294 NTWLIPPFAAQSPLAFPHLPVEDETWGGNGGGLGRDGKSDLIPWASEFLYLASMPCKTAE 353
Query: 352 ERQIRDRKAFLLHNLFVDVAIFRAIKAVHHVMGKPELI-YPSNCKILYTEIIGGLRIAIM 410
ERQ+RDRKAFLLH+LFVD+AIFRAIKAV V P ++ + KIL+TE +G L I +M
Sbjct: 354 ERQVRDRKAFLLHSLFVDIAIFRAIKAVQQVRVNPNVLSLVGSSKILHTERLGDLSITVM 413
Query: 411 KDASNACCKVDTKIDGSQATGVDKNNLVERNLLKGITADENTAAHDVATLGVVNVRYCGY 470
KDASNA CKVD+KIDG QATG+DK NL+ERNLLKGITADENTAAHD+ATLG+VNVRYCGY
Sbjct: 414 KDASNASCKVDSKIDGLQATGLDKRNLLERNLLKGITADENTAAHDIATLGIVNVRYCGY 473
Query: 471 IAVVKVQERENKKVGPLFQSIELEQPEGGANALNINSLRLLIHETTTLEDNKPAPNLQNL 530
AVVKV E K V P QSIELEQPEGGANALNINSLRLL+H+T E +KP P+LQ L
Sbjct: 474 FAVVKVDGAEEKNVRPPSQSIELEQPEGGANALNINSLRLLLHKTIPSESSKPMPHLQTL 533
Query: 531 EREELNASQMFVERLLEESIAKLEEEKPEREHFVRWELGACWIQHLQDQKNAEKDKKLSK 590
E E+L+ASQ FVER+LEESIAKLE E+ E++HFVRWELGACWIQHLQDQKN EKDKK
Sbjct: 534 ESEDLSASQAFVERILEESIAKLEHEELEQDHFVRWELGACWIQHLQDQKNTEKDKKSPT 593
Query: 591 EKAKKLSNEKAKSEMKVEGLGTPLKSLKNNRKKSEGSNHKIHSETLKSQADGVNGESEKA 650
EK K+ S+EK EMKVEGLGTPL+SLKN++KK E +N KI SE +S DG+ GE E A
Sbjct: 594 EKNKRPSSEK---EMKVEGLGTPLRSLKNSKKKLEETNMKIQSERSRSSIDGMVGEIENA 650
Query: 651 TSASIEARLESRDKENELALKNLLSDEAFARLKESETGLHCKSLEELIDLSHNYYVEVAL 710
SAS+E++LE+ KENEL L+ +LSD AF RL+ES+TGLHCKSL+EL+D+S YY++VAL
Sbjct: 651 NSASMESQLETTAKENELTLQMMLSDSAFTRLRESDTGLHCKSLQELLDMSQKYYIDVAL 710
Query: 711 PKLVTDFGSLELSPVDGRTLTDFMHTRGLQMRSLGHVVKLSEKLSHVQSLCIHEMIVRAF 770
PKLV DFGSLELSPVDGRTLTDFMHTRGL+MRSLGHVVKLSEKLSHVQSLCIHEMIVRA+
Sbjct: 711 PKLVADFGSLELSPVDGRTLTDFMHTRGLRMRSLGHVVKLSEKLSHVQSLCIHEMIVRAY 770
Query: 771 KHIIQAVISAVGNTQRMAVSIAAALNLMLGVHESDGLNKSHNVHPLVWRWLELFLMKRYE 830
KHI+QAVI+AV N ++MA+SIAAALNLMLGV E +KS++V+ LVW+WLE+FL KRYE
Sbjct: 771 KHILQAVIAAVVNHEKMAISIAAALNLMLGVPERGDSDKSYHVNSLVWKWLEVFLKKRYE 830
Query: 831 WDLNGLNFKDVRKFAILRGLCHKVGIELVSRDFDMDSPSPFRKIDVVSLVPVHKQAACSS 890
WDL+ NFKDVRKFAILRGLCHKVGIELV RDFDMDSP PFRK D+VSLVPVHKQAACSS
Sbjct: 831 WDLSRSNFKDVRKFAILRGLCHKVGIELVPRDFDMDSPHPFRKSDIVSLVPVHKQAACSS 890
Query: 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD 950
ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD
Sbjct: 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD 950
Query: 951 FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010
FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT
Sbjct: 951 FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010
Query: 1011 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIA 1070
CGPSHPNTAATYINVAMMEEGLGNVH+ALRYLHKALKCNQRLLGPDHIQTAASYHAIAIA
Sbjct: 1011 CGPSHPNTAATYINVAMMEEGLGNVHIALRYLHKALKCNQRLLGPDHIQTAASYHAIAIA 1070
Query: 1071 LSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKP 1130
LSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKP
Sbjct: 1071 LSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKP 1130
Query: 1131 DASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDNNLTSPDGSSK 1190
DASIASKGHLSVSDLLDYINPS DTKGR+ +++RK+Y+AK+K ++L S + S +
Sbjct: 1131 DASIASKGHLSVSDLLDYINPSRDTKGRDFVSVRRKSYIAKMKEKTNPVSDLPSSNESPQ 1190
Query: 1191 EVLRESSDEETHAPEPESDTDVNQGSSIPFQQQELVVEESAVEKPNITEEISSAIHEEGD 1250
E+ +E+ DEETH P +T SS Q Q+ +VEE+A +K I E+ I EGD
Sbjct: 1191 EIPQEAIDEETHMPIASQET-----SSTQVQFQQPIVEETADKKSGIVSEVLPEILAEGD 1245
Query: 1251 DGWQPVQRLRSAGSYGRRLKQRRATIGKVHSYQKRNADAVIDYSSAKSSHHSSRYYLLKK 1310
DGWQPVQR RSAGSYGRRLKQRR I KV YQK+ DA +DY K++H ++RYYLLKK
Sbjct: 1246 DGWQPVQRPRSAGSYGRRLKQRRGIISKV--YQKKIVDANMDYPPVKNTHQNNRYYLLKK 1303
Query: 1311 RAVSHGSSADHHPVTTFHGTKFGRRVVKAVAYRVKSMPSSAKTGTVEASINGSEPSSSPS 1370
R +SHGS DHH GTKFGRR+VKAV YRVKS+PS KT E S +G + SS
Sbjct: 1304 RPLSHGSYVDHHASNPSQGTKFGRRIVKAVTYRVKSIPSVNKTAPTENSKSGVKTFSS-L 1362
Query: 1371 ESRPASAPNDTSSVKNSIISLGKSPSYKEVAVAPPGTIAMLQVRVPQSDNPDNQEFSFGK 1430
ES SA +D VK+S++SLGKSPSYKEVA+APPGTIA QV +PQ+DN DN++ G
Sbjct: 1363 ESAQLSASSDAGQVKSSVVSLGKSPSYKEVALAPPGTIAKFQVWLPQNDNSDNKDIGVGG 1422
Query: 1431 PEDGTMEEKENVNTNVTG-AEKTNEEKSDSVLDATDNLKEETGVHPNREETHISDGLEDN 1489
++ T+E EN + VT A+K N S D+ D+LK+ T V +E++ ++ E+N
Sbjct: 1423 SKEETIEAIENASEVVTVLADKDNS----SATDSNDHLKDVTDVIEEKEDSQSNNAKEEN 1478
Query: 1490 PSVVVSESERGVGSVVDIHKVVQDGILINGIPNSIDSPTSE-FYEKDSSESIESHDNTKS 1548
+V ++ +V++H V+Q+ I I+ IPNSID P+ E +EKDS+ E N+
Sbjct: 1479 ALMVARKTIESESGIVEVHGVMQNSISIDRIPNSIDFPSKEPPFEKDSAGEFEPQCNSNP 1538
Query: 1549 TLQVVDDLKEKPSVFNPGDTRGLPNRKLSASAVPFNPSPAVARASAVAINMTLPPGPGAV 1608
T V+DL+++ + G+TRGLPN+KLSASA PFNPSP++ARA+ V++N++LPPGPG+V
Sbjct: 1539 TSPEVEDLRDRSLATSSGETRGLPNKKLSASAAPFNPSPSIARAAPVSMNISLPPGPGSV 1598
Query: 1609 TAVAPWPVNMTLHPRPATVLPTVNPMCSSPHQPYPSPPSTPNMMQPLPFMYPPYTQPQGV 1668
AVAPWPVNMTLHP PATVLP V+PM S H PYPSPP+TPNMMQPLPF+YPPY+Q Q V
Sbjct: 1599 PAVAPWPVNMTLHPGPATVLPPVSPMPSP-HHPYPSPPATPNMMQPLPFIYPPYSQSQAV 1657
Query: 1669 PTSTFPVTTSAFHHNHFSWQCNGNSNVPEFIPGPFLPGYHPMEFSVPPPVVEPILDPIMQ 1728
PTSTFPVT++AFH NHFSWQCN N V EFIP PG H MEFSV PPV EPI D ++
Sbjct: 1658 PTSTFPVTSNAFHPNHFSWQCNVNHRVNEFIPSTIWPGCHGMEFSVLPPVTEPIPDSALE 1717
Query: 1729 PKAQSGDLDSSCSASILPENIDAVGDAEKEVDLLASKSMDNANEVAGIGRETVRGEFVKE 1788
PK Q + S+ +LP +I V +A++EV+LLA ++ DNAN++AG VR E VKE
Sbjct: 1718 PKVQFENPGSASPPPVLPADIVNVEEAKREVNLLAPEATDNANDLAG-----VRLENVKE 1772
Query: 1789 NGHLNLCGTENAGSEPVHFTSQNQSLRRNVEREIEGEKTFSILVRGRRNRKQTLRIPISL 1848
NGH NL E +G++ H+ S + ER+I+GEKTFSIL+RGRRNRKQTLR+PISL
Sbjct: 1773 NGHSNLGEVEISGNDSSHYKSFKKDGSNTDERKIDGEKTFSILIRGRRNRKQTLRMPISL 1832
Query: 1849 LSRPYGSQSFKVIYNRVIRGSEAPKSFSFSSTGDSTATA 1887
L+RPYGSQSFKVIYNRV+RGSEAPKS F S D TA+A
Sbjct: 1833 LNRPYGSQSFKVIYNRVVRGSEAPKSTCFPSAKDCTASA 1871
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359489732|ref|XP_002278370.2| PREDICTED: protein KIAA0664 homolog [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2558 bits (6629), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1323/1906 (69%), Positives = 1529/1906 (80%), Gaps = 61/1906 (3%)
Query: 1 MAPRNSRGKAKNEKKKKEEKVLPVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTE 60
MAP++ RGK + +KKKKEEKVLPVV+D+TVNLPD+T VILKGISTDRIIDVRRLLSVNT
Sbjct: 1 MAPKSGRGKQRGDKKKKEEKVLPVVMDVTVNLPDETSVILKGISTDRIIDVRRLLSVNTI 60
Query: 61 TCSITNFSLSHEIRGPRLKDAVDVAALKPCVLSLTEEDFDEEGAAAHVRRVLDIVACTTS 120
TC+ITNFSLSHE+RGP LKD VDVAALKPCVL+L EED+DE+ AAAHVRRVLDIVACTT
Sbjct: 61 TCNITNFSLSHEVRGPGLKDTVDVAALKPCVLTLVEEDYDEDTAAAHVRRVLDIVACTTC 120
Query: 121 FGPCGFDAGKNVPDSKSAKKTTAKNEKDKQSQPPSSPQSKNSKSSNDVTV--------DG 172
FGP DAGKN A+ +DK S SS N+K S+ + +G
Sbjct: 121 FGPSPSDAGKN-----------AQGAQDKNSGNKSSKALANAKQSSSSSPPPTPSSANEG 169
Query: 173 DGEMSHAFPKLSSFYEFFSLSHLTPPLQFIRKAPKRRVEEISPDDHLLSLDVKLCNGKMV 232
+GEMS++ PKL SFYEFFSLSHLTPPLQFIR+A K +EI DHL SL+VKLCNGK+V
Sbjct: 170 EGEMSNSCPKLGSFYEFFSLSHLTPPLQFIRRARKWHDDEILVHDHLFSLEVKLCNGKLV 229
Query: 233 NVEACRKGFYSVGKQRILCHNIVDLLGQLSRAFDNAYNELMNAFSERNKFGNLPYGFRAN 292
VE CR+GFYS+GKQRILCHN+VDLL QLSRAFDNAY++LM AFSERNKFGNLPYGFRAN
Sbjct: 230 LVEVCRRGFYSIGKQRILCHNLVDLLRQLSRAFDNAYDDLMKAFSERNKFGNLPYGFRAN 289
Query: 293 TWLIPPIAAQSPSVFPPLPAEDEAWGGNGGGLGRDGKSDLIPWANEFLFVASMPCKTAEE 352
TWLIPP+AAQ P++FPPLP EDE WGG+GGG GRDGKSDLIPWANEFL +ASMPCKTAEE
Sbjct: 290 TWLIPPVAAQLPAIFPPLPVEDETWGGSGGGQGRDGKSDLIPWANEFLLLASMPCKTAEE 349
Query: 353 RQIRDRKAFLLHNLFVDVAIFRAIKAVHHVMGKPELIYPS-NCKILYTEIIGGLRIAIMK 411
RQIRDRKAFLLH+LFVDVAIFRAI AV HVMGK +L + S N +ILY+E +G L I +MK
Sbjct: 350 RQIRDRKAFLLHSLFVDVAIFRAISAVQHVMGKLDLTHSSVNSEILYSERVGDLTIIVMK 409
Query: 412 DASNACCKVDTKIDGSQATGVDKNNLVERNLLKGITADENTAAHDVATLGVVNVRYCGYI 471
DA+NA CKVDTKIDG QATGV + NLVERNLLKGITADENTAAHD ATLGVVNVRYCGYI
Sbjct: 410 DATNASCKVDTKIDGIQATGVGQQNLVERNLLKGITADENTAAHDFATLGVVNVRYCGYI 469
Query: 472 AVVKVQERENKKVGPLFQSIEL-EQPEGGANALNINSLRLLIHETTTLEDNKPAPNLQNL 530
AVVK++ +E+ K+ FQSIEL +QPEGGANALNINSLRLL+H+ T E+NK + Q L
Sbjct: 470 AVVKLEGKESSKMDTHFQSIELLDQPEGGANALNINSLRLLLHQRTASENNKLVQHSQTL 529
Query: 531 EREELNASQMFVERLLEESIAKLEEEKPEREHFVRWELGACWIQHLQDQKNAEKDKKLSK 590
E EEL+A+Q FVE LLEES+AKL+EE+ E+ FVRWELGACWIQHLQDQ N EKDKK S
Sbjct: 530 EHEELSAAQAFVEGLLEESLAKLQEEEVEKHIFVRWELGACWIQHLQDQNNTEKDKKPS- 588
Query: 591 EKAKKLSNEKAKSEMKVEGLGTPLKSLKNNRKKSEGSNHKIHSETLKSQADGVNGESEKA 650
K K+EMKVEGLGTPL+SLKNN+K S+G+N K+ SE K+ A+ V GE+E +
Sbjct: 589 -------TAKTKNEMKVEGLGTPLRSLKNNKKNSDGNNLKMQSEKSKTPAESVIGEAENS 641
Query: 651 TSASIEARLESRDKENELALKNLLSDEAFARLKESETGLHCKSLEELIDLSHNYYVEVAL 710
T +S + +LE+ ENELALK +LSD AFARLK+SETGLH KSL+EL+DLS YY EVAL
Sbjct: 642 TLSSTKPQLEANANENELALKRMLSDAAFARLKQSETGLHRKSLQELVDLSQKYYSEVAL 701
Query: 711 PKLVTDFGSLELSPVDGRTLTDFMHTRGLQMRSLGHVVKLSEKLSHVQSLCIHEMIVRAF 770
PKLV DFGSLELSPVDGRTLTDFMHTRGL+MRSLGHVVKLSEKLSHVQSLCIHEMIVRAF
Sbjct: 702 PKLVADFGSLELSPVDGRTLTDFMHTRGLRMRSLGHVVKLSEKLSHVQSLCIHEMIVRAF 761
Query: 771 KHIIQAVISAVGNTQRMAVSIAAALNLMLGVHESDGLNKSHNVHPLVWRWLELFLMKRYE 830
KHI+QAVI+AV N +++A+SIAAALNLMLGV + LN+S N HPLVWRWLE+FL KRYE
Sbjct: 762 KHILQAVIAAVVNPEKLAMSIAAALNLMLGVPGNRELNQSCNAHPLVWRWLEVFLKKRYE 821
Query: 831 WDLNGLNFKDVRKFAILRGLCHKVGIELVSRDFDMDSPSPFRKIDVVSLVPVHKQAACSS 890
WD + LN+KDVRKFA+LRGLCHKVGIELV RDFDMDSP PF+K+DV+SLVPVHKQAACSS
Sbjct: 822 WDFSTLNYKDVRKFAVLRGLCHKVGIELVPRDFDMDSPYPFQKLDVISLVPVHKQAACSS 881
Query: 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD 950
ADGRQLLESSKTALDKGKLEDAV+YGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD
Sbjct: 882 ADGRQLLESSKTALDKGKLEDAVSYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD 941
Query: 951 FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010
FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT
Sbjct: 942 FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1001
Query: 1011 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIA 1070
CGPSHPNTAATYINVAMMEEGLG+VHVALRYLHKALKCNQ+LLGPDHIQTAASYHAIAIA
Sbjct: 1002 CGPSHPNTAATYINVAMMEEGLGHVHVALRYLHKALKCNQKLLGPDHIQTAASYHAIAIA 1061
Query: 1071 LSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKP 1130
LSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKP
Sbjct: 1062 LSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKP 1121
Query: 1131 DASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDNNLTSPDGSSK 1190
DASIASKGHLSVSDLLDYINPS D KGR+ T+KRK+Y+AKVKG YQD +L SP+ S K
Sbjct: 1122 DASIASKGHLSVSDLLDYINPSQDAKGRDAVTVKRKSYIAKVKGTSYQDFSLASPEDSPK 1181
Query: 1191 EVLRESSDEETHAPEPESDTDVN---QGSSIPFQQQELVVEESAVEKPNITEEISSAIHE 1247
+ +E+SDEE E D N + +S+P +Q V++E++ + PNI E SS +
Sbjct: 1182 DTPKETSDEEKQIRESGGSVDTNHETRFASVPAEQP--VMDEASGDTPNIGNETSSETNA 1239
Query: 1248 EGDDGWQPVQRLRSAGSYGRRLKQRRATIGKVHSYQKRNADAVIDYSSAKSSHHSSRYYL 1307
EG+DGWQ VQR RSAGSYGRR++QRR TI KV+SYQK++ D +DYS K+++ +SRYY+
Sbjct: 1240 EGEDGWQSVQRPRSAGSYGRRIRQRRTTISKVYSYQKKDVDTELDYSQVKNTYQNSRYYM 1299
Query: 1308 LKKRAVSHGSSADHHPVTTFHGTKFGRRVVKAVAYRVKSMPSSAKTGTVEASINGSEPSS 1367
LK+R +S GS+ D+H + GTKFGRR+VKAV YRVKS+PS+ KT T
Sbjct: 1300 LKRRTISAGST-DYHTSGSSPGTKFGRRIVKAVTYRVKSVPST-KTAT------------ 1345
Query: 1368 SPSESRPASAPNDTSSV--KNSIISLGKSPSYKEVAVAPPGTIAMLQVRVPQSDNPDNQE 1425
E+ SAPND S + K S++SLGKS SYKEVA+APPGTIA +QV V Q+D PDN++
Sbjct: 1346 -KLETGTISAPNDMSPISQKKSVVSLGKSLSYKEVALAPPGTIAKMQVTVFQNDIPDNRQ 1404
Query: 1426 FSFGKPEDGTMEEKENVNTNVTGAEKTN-EEKSDSVLDATDNLKEETGVHPNREETHISD 1484
GKPE T E E+ ++ +T A N EE S+L + D LK+E V + ET D
Sbjct: 1405 LDVGKPEVETNEPSESTDSMITEAVNINAEENKISILHSKDYLKDEVEVVEKKNETQSGD 1464
Query: 1485 GLEDNPSVVVSESERGVGS-VVDIHKVVQDGILINGIPNSIDSPTSEFYEKDSSESIESH 1543
+ + PS +VS+S V S ++ +VVQ G+ ++G PNS DSP E E SS E +
Sbjct: 1465 AIGNIPSEIVSKSVEAVESHGAEVQEVVQGGVKMDGRPNSTDSPNEELSEDPSSS--EPN 1522
Query: 1544 DNTKSTLQVVDDLKEKPSVFNPGDTRGLPNRKLSASAVPFNPSPAVARASAVAINMTLPP 1603
+N+ S LQ V++LK+KPSV N GDTR LPN+KLSASA PFNPSPA+AR VA+N+TL
Sbjct: 1523 ENSHSALQGVENLKDKPSVLNSGDTRELPNKKLSASAAPFNPSPAIARPPPVAMNITLSS 1582
Query: 1604 GPGAVTAVAPWPVNMTLHPRPATVLPTVNPMCSSPHQPYPSPPSTPNMMQPLPFMYPPYT 1663
GPGAV AV+ WP+NMTLHP PA VLP VNPMCSSPH PYPSPP TPNMM PLPFMYPPYT
Sbjct: 1583 GPGAVPAVSAWPLNMTLHPGPAAVLPAVNPMCSSPHHPYPSPPPTPNMMHPLPFMYPPYT 1642
Query: 1664 QPQGVPTSTFPVTTSAFHHNHFSWQCNGNSNVPEFIPGPFLPGYHPMEFSVPPPVVEPIL 1723
QPQ +P S FPVT+S FH NHF+WQCN N N EF+PG PG HPMEFS+ PPV+EPI
Sbjct: 1643 QPQAIPASNFPVTSSPFHPNHFAWQCNMNPNASEFMPGTVWPGCHPMEFSIIPPVIEPIS 1702
Query: 1724 DPIMQPKAQSGDLDSSCSASILPENIDAVGDAEKEVDLLASKSMDNANEVAGIGRETVRG 1783
DPI++PK QSG+ + SA ILPE I G+ KEV+LLAS++M +AN + +G E
Sbjct: 1703 DPILEPKVQSGNSEGLISAPILPEEISNGGETIKEVNLLASEAMGDANIIPVVGSEN--- 1759
Query: 1784 EFVKENGHLNLCGTENAGSEPV-HFTSQNQSLRRNVEREIEGEKTFSILVRGRRNRKQTL 1842
KE H + C E++G E + H S N+ + E++I+GEKTFSIL+RGRRNRKQTL
Sbjct: 1760 --GKEIAHSDPCTVESSGKEQLGHSNSPNECTGISSEKKIDGEKTFSILIRGRRNRKQTL 1817
Query: 1843 RIPISLLSRPYGSQSFKVIYNRVIRGSEAPKSFSFSSTGDSTATAV 1888
R+PISLL+RPYGSQSFKVIYNRV+RGSE PKS S S +S A AV
Sbjct: 1818 RMPISLLNRPYGSQSFKVIYNRVVRGSEVPKSNSISLREESAAGAV 1863
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356520282|ref|XP_003528792.1| PREDICTED: uncharacterized protein LOC100808136 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2365 bits (6129), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1249/1901 (65%), Positives = 1471/1901 (77%), Gaps = 75/1901 (3%)
Query: 1 MAPRNSRGKAKNEKKKKEEKVLPVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTE 60
MAPRNSRGKAK EKKKKEEKVLPVV+DITV L D+T V+ +GISTDRIIDVRRLLSVNTE
Sbjct: 1 MAPRNSRGKAKGEKKKKEEKVLPVVIDITVKLLDETHVLKQGISTDRIIDVRRLLSVNTE 60
Query: 61 TCSITNFSLSHEIRGPRLKDAVDVAALKPCVLSLTEEDFDEEGAAAHVRRVLDIVACTTS 120
TC ITNFSLSHE+RGPRLKD VDV+ALKPC+L L EED+DE+ A AHVRR+LDIVACTTS
Sbjct: 61 TCYITNFSLSHEVRGPRLKDTVDVSALKPCILDLVEEDYDEDRAVAHVRRLLDIVACTTS 120
Query: 121 FGPCGFDAGKNVPDSKSAKKTTAKNEKDKQSQPPSSPQSKNSKSSNDVTVDGDGEMSHAF 180
FGP S K + +K +S+ P S QS ++ D+ GE+SH+
Sbjct: 121 FGP------------PSPKNDSGTVQKSGKSEAPPSKQSAKDAAAADLD----GEISHSC 164
Query: 181 PKLSSFYEFFSLSHLTPPLQFIRKAPKRRVEEISPDDHLLSLDVKLCNGKMVNVEACRKG 240
PKL +FYEFFSLSHLT P+Q++++ +R VEEIS +D+L SLDVK+CNGK+V+VEACRKG
Sbjct: 165 PKLENFYEFFSLSHLTAPIQYVKRGSRRHVEEISEEDYLFSLDVKVCNGKVVHVEACRKG 224
Query: 241 FYSVGKQRILCHNIVDLLGQLSRAFDNAYNELMNAFSERNKFGNLPYGFRANTWLIPPIA 300
FYSVGKQRILCHN+VDLL QLSRAFDNA+++L+ AFSERNKFGNLPYGFRANTWL+PP+A
Sbjct: 225 FYSVGKQRILCHNLVDLLRQLSRAFDNAFDDLLKAFSERNKFGNLPYGFRANTWLVPPVA 284
Query: 301 AQSPSVFPPLPAEDEAWGGNGGGLGRDGKSDLIPWANEFLFVASMPCKTAEERQIRDRKA 360
AQSPS FPPLP EDE WGGNGGGLGRDGK DL+PWANEF F+ASMPC TAEERQ+RDRKA
Sbjct: 285 AQSPSSFPPLPVEDETWGGNGGGLGRDGKYDLVPWANEFSFIASMPCNTAEERQVRDRKA 344
Query: 361 FLLHNLFVDVAIFRAIKAVHHVMGKPEL---IYPSNCKILYTEIIGGLRIAIMKDASNAC 417
FLLH+LFVDVAIFRAIKA+ +VM +P+ I +N I+YTE +G L I ++KD S A
Sbjct: 345 FLLHSLFVDVAIFRAIKAIKYVMEEPKFSCSIVENN--IIYTERVGDLNINVLKDVSVAS 402
Query: 418 CKVDTKIDGSQATGVDKNNLVERNLLKGITADENTAAHDVATLGVVNVRYCGYIAVVKVQ 477
K+DTKID +ATGV++ +L+ERN+LKGITADENTAAHD+ TLGV+NVRYCGY+ VKV+
Sbjct: 403 YKIDTKIDRVEATGVNQKDLLERNILKGITADENTAAHDITTLGVINVRYCGYVVTVKVE 462
Query: 478 ERENKKV-GPLFQSIEL-EQPEGGANALNINSLRLLIHETTTLEDNKPAPNLQNLEREEL 535
N+ V P Q+IEL +QPEGGANALNINSLRLL+H TT E+NKP +Q E EE
Sbjct: 463 RGVNENVDSPSQQNIELFDQPEGGANALNINSLRLLLHNTTPPENNKPMSQIQTFESEEF 522
Query: 536 NASQMFVERLLEESIAKLEEEKPEREHFVRWELGACWIQHLQDQKNAEKDKKLSKEKAKK 595
AS F+E+L++ES+AKLEEE+P ++FVRWELGACWIQHLQDQ N EKDKKLS EKAK
Sbjct: 523 GASHAFLEKLIKESLAKLEEEEPGIDYFVRWELGACWIQHLQDQNNTEKDKKLSLEKAK- 581
Query: 596 LSNEKAKSEMKVEGLGTPLKSLKNNRKKSEGSNHKIHSETLKSQADGVNGESEKATSASI 655
+EMKVEGLG PLK+LKN +KKS+ SN +E K N E+E SI
Sbjct: 582 -------NEMKVEGLGKPLKALKNYKKKSDSSNTNSATEYSK-----FNREAESPPFPSI 629
Query: 656 EARLESRDKENELALKNLLSDEAFARLKESETGLHCKSLEELIDLSHNYYVEVALPKLVT 715
E++LE+ + ENEL LK +LS+EAF RLKES TGLHCKS+ +LI+LS YY +VALPKLV
Sbjct: 630 ESQLETTEAENELVLKRILSEEAFTRLKESGTGLHCKSMHDLINLSRKYYTDVALPKLVA 689
Query: 716 DFGSLELSPVDGRTLTDFMHTRGLQMRSLGHVVKLSEKLSHVQSLCIHEMIVRAFKHIIQ 775
DFGSLELSPVDGRTLTDFMHTRGL+MRSLGHVVKLSEKLSHVQSLCIHEMIVRAFKHI++
Sbjct: 690 DFGSLELSPVDGRTLTDFMHTRGLRMRSLGHVVKLSEKLSHVQSLCIHEMIVRAFKHILR 749
Query: 776 AVISAVGNTQRMAVSIAAALNLMLGVHESDGLNKSHNVHPLVWRWLELFLMKRYEWDLNG 835
AVISAV + ++MA SIA ALNL+LGV E+ L+KS VHPLVW+WLELFL KR++WD N
Sbjct: 750 AVISAV-DKEKMASSIAGALNLLLGVPENRELDKSREVHPLVWKWLELFLKKRFDWDPNK 808
Query: 836 LNFKDVRKFAILRGLCHKVGIELVSRDFDMDSPSPFRKIDVVSLVPVHKQAACSSADGRQ 895
LN+KDVRKFAILRGLCHKVGIELV RDFDMDSP PF+K D+VSLVPVHKQAACSSADGRQ
Sbjct: 809 LNYKDVRKFAILRGLCHKVGIELVPRDFDMDSPIPFQKSDIVSLVPVHKQAACSSADGRQ 868
Query: 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQAT 955
LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQAT
Sbjct: 869 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQAT 928
Query: 956 IYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 1015
IYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH
Sbjct: 929 IYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 988
Query: 1016 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLME 1075
PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG DHIQTAASYHAIAIALSLME
Sbjct: 989 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGADHIQTAASYHAIAIALSLME 1048
Query: 1076 AYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIA 1135
AYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIA
Sbjct: 1049 AYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIA 1108
Query: 1136 SKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDNNLTSPDGSSKEVLRE 1195
SKGHLSVSDLLDYINP +TKGR+ + KR++ + KV+ Y + ++S D SSKE+ +E
Sbjct: 1109 SKGHLSVSDLLDYINP--NTKGRDAAA-KRRSQITKVRATSYPNVGMSSSDESSKEIPKE 1165
Query: 1196 SSDEETHAPEPESDTDVNQGSSIPFQQQELVVEESAVEKPNITEEISSAIHEEGDDGWQP 1255
+SDEE P D Q ++ ++ ++++ + EKP I +EI S H EG+DGWQP
Sbjct: 1166 ASDEEVQIPILVGSADSEQENNSGPDLEQAILKQISDEKPQIYDEILSEAHAEGEDGWQP 1225
Query: 1256 VQRLRSAGSYGRRLKQRRATIGKVHSYQKRNADAVIDYSSAKSSHHSSRYYLLKKRAVSH 1315
VQR RSAGSYGRRLKQRRAT+GKV+SYQK N + + +S + SSRYY LKKR +SH
Sbjct: 1226 VQRPRSAGSYGRRLKQRRATLGKVYSYQK-NVEVGSESPFVRSPNPSSRYYFLKKRTISH 1284
Query: 1316 GSSADHHPVTTFHGTKFGRRVVKAVAYRVKSMPSSAKTGTVEASINGSEPSSSPSESRPA 1375
GS D H V GTKFGR+VVKAV YRVKS+PS++K E NG + S S P
Sbjct: 1285 GSYTDDHTVNITQGTKFGRKVVKAVTYRVKSVPSTSKPCVNEKLENGDKLLS----SLPE 1340
Query: 1376 SAPNDTSSVKNSIISLGKSPSYKEVAVAPPGTIAMLQVRVPQSDNPDNQEFSFGKPEDGT 1435
P D + VK SI+SLGKSPSYKEVA+APPGTI+ QV PQS + E GK E+
Sbjct: 1341 PDPTDANPVKKSIVSLGKSPSYKEVALAPPGTISKFQVYNPQSVISVSSEHDGGKHEEED 1400
Query: 1436 MEEKENVNTNVTGAEKTN---EEKSDSVLDATDNLKEETGVH-PNREETHISDGLEDNPS 1491
+E NVN + T E + E+ DS+ D+ D+ +++TGV +EET + ++DN
Sbjct: 1401 IEADRNVNVDPTPTEVNDMVKEKNDDSLSDSVDDSQDDTGVAIEGKEETQLIVAVQDN-- 1458
Query: 1492 VVVSESERGVGSVVDIHKVVQDGILINGIPNSIDSPTSEFYEKDSSESIESHDNTKSTLQ 1551
S G V+ V + ILI+ + + +DS E +SS S+E DNT T Q
Sbjct: 1459 ---CMSAEGQSGDVEAQGAVDNSILIHAVDDHVDSSKQELDASNSSASLEPSDNTNPTSQ 1515
Query: 1552 VVDDLKEKPSVFNPGDTRGLPNRKLSASAVPFNPSPAVARASAVAINMTLPPGPGAVTAV 1611
+DLK S + T G+P +KLSASA PFNPSPA+ARA+ +A+NMTLP GP AV A+
Sbjct: 1516 GGEDLKVNVSPSSQSHTGGIPYKKLSASAAPFNPSPAIARAAPIAMNMTLPSGPSAVPAI 1575
Query: 1612 APWPVNMTLHPRPATVLPTVNPMCSSPHQPYPSPPSTPNMMQPLPFMYPPYTQPQGVPTS 1671
PWPVNM +HP P TVLPTV PMCSSPH YPSPP+TPNMMQPLPF+YPP+TQPQ V S
Sbjct: 1576 GPWPVNMNVHPGPTTVLPTVAPMCSSPHHAYPSPPATPNMMQPLPFVYPPFTQPQSVAPS 1635
Query: 1672 TFPVTTSAFHHNHFSWQCNGNSNVPEFIPGPFLPGYHPMEFSVPPPVVEPILDPIMQPKA 1731
+PVT+SAFH NHF++ N + +F P PG HP+EF +P P+VEPI DPI + +
Sbjct: 1636 NYPVTSSAFHANHFTYL---NPTISKFGPSAVWPGCHPVEFPLPVPIVEPIRDPISESQV 1692
Query: 1732 QSGDLDSSCSASILPENIDAVGDAEKEVDLLASKSMDNANEVAGIGRETVRGEFVKENGH 1791
+S SAS+LPE+ID++GD+ + V L+S+ ++ AG E +KENG+
Sbjct: 1693 LCHGSESPSSASVLPEDIDSIGDSNQGVKTLSSEISEDEAVRAG-------SENIKENGN 1745
Query: 1792 LNLCGTENAGSEPVHFTSQNQSL-----RRNVEREIEGEKTFSILVRGRRNRKQTLRIPI 1846
+N G+ENAG++ QNQ+ + E ++GEKTFSIL+RGRRNRKQTLR+PI
Sbjct: 1746 MNFHGSENAGNK------QNQNFGSNGSSSSSETNMDGEKTFSILIRGRRNRKQTLRMPI 1799
Query: 1847 SLLSRPYGSQSFKVIYNRVIRGSEAPKSFSFSSTGDSTATA 1887
SLL+RP GSQSFKVIYNRV+RGS A KS + SS+ D TATA
Sbjct: 1800 SLLTRPNGSQSFKVIYNRVVRGSHATKSMNLSSSKDCTATA 1840
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356560227|ref|XP_003548395.1| PREDICTED: protein TIF31 homolog [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2343 bits (6071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1246/1900 (65%), Positives = 1465/1900 (77%), Gaps = 67/1900 (3%)
Query: 1 MAPRNSRGKAKNEKKKKEEKVLPVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTE 60
MAPRNSRGK K EKKKKEEKVLPVV+DITV L D+T V+ +GISTDRIIDVRRLLSVNTE
Sbjct: 1 MAPRNSRGKPKGEKKKKEEKVLPVVIDITVKLLDETHVLKQGISTDRIIDVRRLLSVNTE 60
Query: 61 TCSITNFSLSHEIRGPRLKDAVDVAALKPCVLSLTEEDFDEEGAAAHVRRVLDIVACTTS 120
TC ITNFSLSHE+RGPRLKD VDV+ALKPC+L+L EED+DE+ A AHVRR+LDIVACTTS
Sbjct: 61 TCYITNFSLSHEVRGPRLKDTVDVSALKPCLLTLVEEDYDEDRAVAHVRRLLDIVACTTS 120
Query: 121 FGPCGFDAGKNVPDSKSAKKTTAKNEKDKQSQPPSSPQSKNSKSSNDVTVDGDGEMSHAF 180
FGP KN DS + K+ K PP+ QS + TVD +GE+SH+
Sbjct: 121 FGPSSLPPPKN--DSGTVPKS------GKPEAPPAK-QSAKDAEAAAATVDIEGEISHSC 171
Query: 181 PKLSSFYEFFSLSHLTPPLQFIRKAPKRRVEEISPDDHLLSLDVKLCNGKMVNVEACRKG 240
PKL +FYEFFSLSHLT P+Q++++ +RRVEEI +D+L SLDVK+CNGK+V+VEACRKG
Sbjct: 172 PKLENFYEFFSLSHLTAPIQYVKRGSRRRVEEILEEDYLFSLDVKVCNGKVVHVEACRKG 231
Query: 241 FYSVGKQRILCHNIVDLLGQLSRAFDNAYNELMNAFSERNKFGNLPYGFRANTWLIPPIA 300
FYSVGKQRILCHN+VDLL QLSRAFDNA+++L+ AFSERNKFGNLPYGFRANTWL+PP+A
Sbjct: 232 FYSVGKQRILCHNLVDLLRQLSRAFDNAFDDLLKAFSERNKFGNLPYGFRANTWLVPPVA 291
Query: 301 AQSPSVFPPLPAEDEAWGGNGGGLGRDGKSDLIPWANEFLFVASMPCKTAEERQIRDRKA 360
AQSPS FPPLP EDE WGGNGGGLGRDGK DL+PWANEF F+ASMPCKTAEERQ+RDRKA
Sbjct: 292 AQSPSYFPPLPVEDEMWGGNGGGLGRDGKYDLVPWANEFSFIASMPCKTAEERQVRDRKA 351
Query: 361 FLLHNLFVDVAIFRAIKAVHHVMGKPELIYPSNC-----KILYTEIIGGLRIAIMKDASN 415
FLLH+LFVDVAIFRAIKA+ HVM +P +C I+YTE +G L I ++KD S
Sbjct: 352 FLLHSLFVDVAIFRAIKAIKHVMEEPNF----SCSVVENNIIYTERVGDLNINVLKDGSV 407
Query: 416 ACCKVDTKIDGSQATGVDKNNLVERNLLKGITADENTAAHDVATLGVVNVRYCGYIAVVK 475
A CK+DTKIDG +ATGV++ +L+ERNL+KGITADENTAAHD+ TLGV+NVRYCGY+ VVK
Sbjct: 408 ASCKIDTKIDGVEATGVNQKDLLERNLMKGITADENTAAHDITTLGVINVRYCGYVVVVK 467
Query: 476 VQERENKKV-GPLFQSIEL-EQPEGGANALNINSLRLLIHETTTLEDNKPAPNLQNLERE 533
V+ N+ V P Q+IEL +QPEGGANALNINSLRLL+H TT+ E+NKP +Q E E
Sbjct: 468 VEGGVNENVDSPSQQNIELFDQPEGGANALNINSLRLLLHNTTSPENNKPVSQIQTFESE 527
Query: 534 ELNASQMFVERLLEESIAKLEEEKPEREHFVRWELGACWIQHLQDQKNAEKDKKLSKEKA 593
EL AS FVE+L++E++AKLEEE+P ++FVRWELGACW+QHLQDQ N EKDKK S
Sbjct: 528 ELGASHAFVEKLIKENLAKLEEEEPGIDYFVRWELGACWVQHLQDQNNTEKDKKPS---- 583
Query: 594 KKLSNEKAKSEMKVEGLGTPLKSLKNNRKKSEGSNHKIHSETLKSQADGVNGESEKATSA 653
+EKAK+EMKVEGLG PLK+LKN +KKS+ SN+ +E K N E+E +
Sbjct: 584 ----SEKAKNEMKVEGLGKPLKALKNYKKKSDSSNNNSATEYSK-----FNREAESSPLP 634
Query: 654 SIEARLESRDKENELALKNLLSDEAFARLKESETGLHCKSLEELIDLSHNYYVEVALPKL 713
SIE++ E+ + ENEL LK +LSDEAF RLKES TGLHCKS+ +LI+LS YY +VALPKL
Sbjct: 635 SIESQHETTEAENELVLKGMLSDEAFTRLKESGTGLHCKSMHDLIELSRKYYTDVALPKL 694
Query: 714 VTDFGSLELSPVDGRTLTDFMHTRGLQMRSLGHVVKLSEKLSHVQSLCIHEMIVRAFKHI 773
V DFGSLELSPVDGRTLTDFMHTRGL+M SLGHVVKLSEKLSHVQSLCIHEMIVRAFKHI
Sbjct: 695 VADFGSLELSPVDGRTLTDFMHTRGLRMHSLGHVVKLSEKLSHVQSLCIHEMIVRAFKHI 754
Query: 774 IQAVISAVGNTQRMAVSIAAALNLMLGVHESDGLNKSHNVHPLVWRWLELFLMKRYEWDL 833
++AVISAV + ++MA SIA ALNL+LGV E+ +KS VHPLVW+WLELFL KR++WDL
Sbjct: 755 LRAVISAV-DKEKMASSIAGALNLLLGVPENRESDKSREVHPLVWKWLELFLKKRFDWDL 813
Query: 834 NGLNFKDVRKFAILRGLCHKVGIELVSRDFDMDSPSPFRKIDVVSLVPVHKQAACSSADG 893
N LN+KDV+KFAILRGLCHKVGIELV RDFDMDSP PF+K D+VSLVPVHKQAACSSADG
Sbjct: 814 NKLNYKDVKKFAILRGLCHKVGIELVPRDFDMDSPIPFQKSDIVSLVPVHKQAACSSADG 873
Query: 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQ 953
RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQ
Sbjct: 874 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQ 933
Query: 954 ATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 1013
ATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP
Sbjct: 934 ATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 993
Query: 1014 SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL 1073
SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG DHIQTAASYHAIAIALSL
Sbjct: 994 SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGADHIQTAASYHAIAIALSL 1053
Query: 1074 MEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDAS 1133
MEAYPLSVQHEQTTLQILRAKLG DDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDAS
Sbjct: 1054 MEAYPLSVQHEQTTLQILRAKLGSDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDAS 1113
Query: 1134 IASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDNNLTSPDGSSKEVL 1193
IASKGHLSVSDLLDYINP +TKGR+ + KR++ + KV+ YQ+ ++S D SSKE+
Sbjct: 1114 IASKGHLSVSDLLDYINP--NTKGRDAAA-KRRSQITKVRATSYQNTGMSSSDESSKEIP 1170
Query: 1194 RESSDEETHAPEPESDTDVNQGSSIPFQQQELVVEESAVEKPNITEEISSAIHEEGDDGW 1253
+E+SDEE EP D Q S+ ++ ++++ + EK I +EI S H EG+DGW
Sbjct: 1171 KEASDEEVQISEPVGSADSEQESNSGPDLEQAILKQISDEKLQIYDEIFSEAHAEGEDGW 1230
Query: 1254 QPVQRLRSAGSYGRRLKQRRATIGKVHSYQKRNADAVIDYSSAKSSHHSSRYYLLKKRAV 1313
Q VQR RSAGSYGRRLKQRRA +GKV+SY K N + + +S + +SRYY LKKR +
Sbjct: 1231 QSVQRPRSAGSYGRRLKQRRAALGKVYSYHK-NVEVGTESPFVRSPNPNSRYYFLKKRTI 1289
Query: 1314 SHGSSADHHPVTTFHGTKFGRRVVKAVAYRVKSMPSSAKTGTVEASINGSEPSSSPSESR 1373
SHGS D H G KFGR+VVKAV YRVKSMPS++K E NG + S S
Sbjct: 1290 SHGSYTDDHTTNITQGNKFGRKVVKAVTYRVKSMPSTSKPCANETLENGDKLLS----SL 1345
Query: 1374 PASAPNDTSSVKNSIISLGKSPSYKEVAVAPPGTIAMLQVRVPQSDNPDNQEFSFGKPED 1433
P P D + VKNS +SLGKSPSYKEVA+APPGTI+ QV PQS+ + E GK E+
Sbjct: 1346 PEPDPIDANPVKNSKVSLGKSPSYKEVALAPPGTISKFQVYNPQSEISVSSEHDSGKHEE 1405
Query: 1434 GTMEEKENVNTNVTGAE---KTNEEKSDSVLDATDNLKEETGVH-PNREETHISDGLEDN 1489
+E NV+ + T E E+ +DS+ D+ D+ ++TGV +EET + ++DN
Sbjct: 1406 -EVEANRNVDVDPTLIEVNDTVKEKNNDSLSDSVDDSLDDTGVAIEGKEETELIVAVQDN 1464
Query: 1490 PSVVVSESERGVGSVVDIHKVVQDGILINGIPNSIDSPTSEFYEKDSSESIESHDNTKST 1549
S G V V ILI+ + + +DS E +SS S+E NT
Sbjct: 1465 -----CMSAEGQSGDVKAQGAVDSSILIHAVDDHVDSYKQELDTSNSSGSLEPSANTNPI 1519
Query: 1550 LQVVDDLKEKPSVFNPGDTRGLPNRKLSASAVPFNPSPAVARASAVAINMTLPPGPGAVT 1609
Q +DL+ S + T G+P +KLSASA PFNPSPA+ARA+ +A+NMTLP GP AV
Sbjct: 1520 SQGGEDLRVNVSPSSQIRTGGIPYKKLSASAAPFNPSPAIARAAPIAMNMTLPSGPRAVP 1579
Query: 1610 AVAPWPVNMTLHPRPATVLPTVNPMCSSPHQPYPSPPSTPNMMQPLPFMYPPYTQPQGVP 1669
A+ PWPVNM +HP P TVLP V PMCSSPH YPSPP+TPNMMQPLPFMYPP+TQPQ V
Sbjct: 1580 AIGPWPVNMNVHPGPTTVLPAVAPMCSSPHHAYPSPPTTPNMMQPLPFMYPPFTQPQSVS 1639
Query: 1670 TSTFPVTTSAFHHNHFSWQCNGNSNVPEFIPGPFLPGYHPMEFSVPPPVVEPILDPIMQP 1729
S FPVT SAFH NHF++ N + +F P PG HP+EF +P P+VEPI DPI +
Sbjct: 1640 PSNFPVTNSAFHANHFTYL---NPTISKFGPSAVWPGCHPVEFPLPVPIVEPIPDPISES 1696
Query: 1730 KAQSGDLDSSCSASILPENIDAVGDAEKEVDLLASKSMDNANEVAGIGRETVR--GEFVK 1787
+A L+S SAS+LPE+ID +GD+ + V L+S+ ++ E VR E +K
Sbjct: 1697 QALCHGLESPSSASVLPEDIDNIGDSNQVVKTLSSEISED---------EAVRSGSESIK 1747
Query: 1788 ENGHLNLCGTENAGSEPVHFTSQNQSLRRNVEREIEGEKTFSILVRGRRNRKQTLRIPIS 1847
ENG++N G+ENAG++ H + + ++GEKTFSIL RGRRNRKQTLR+PIS
Sbjct: 1748 ENGNMNFHGSENAGNKQ-HQNIASNGNSSSSGTNMDGEKTFSILFRGRRNRKQTLRMPIS 1806
Query: 1848 LLSRPYGSQSFKVIYNRVIRGSEAPKSFSFSSTGDSTATA 1887
LL+RP GSQSFKVIYNRV+RGS APKS + SS+ D TAT+
Sbjct: 1807 LLTRPNGSQSFKVIYNRVVRGSHAPKSMNLSSSKDCTATS 1846
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449487415|ref|XP_004157615.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101229361 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2335 bits (6050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1232/1913 (64%), Positives = 1476/1913 (77%), Gaps = 84/1913 (4%)
Query: 1 MAPRNSRGKAK--NEKKKKEEKVLPVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVN 58
MAPRNS GK K ++KKKKEEKVLP V+DI+V LPDDT V+LKGISTD+IIDVRRLLSV
Sbjct: 1 MAPRNSHGKPKAHDKKKKKEEKVLPAVMDISVLLPDDTLVVLKGISTDKIIDVRRLLSVK 60
Query: 59 TETCSITNFSLSHEIRGPRLKDAVDVAALKPCVLSLTEEDFDEEGAAAHVRRVLDIVACT 118
TETC+ITNFSL+HE+RGPRLKD+VDV+ALK C L+L EED+DEE AAAHVRR+LD+VACT
Sbjct: 61 TETCNITNFSLTHEVRGPRLKDSVDVSALKLCTLTLVEEDYDEELAAAHVRRLLDVVACT 120
Query: 119 TSFG--PCGFDAGKNVPDSKSAKKTTAKNEKDKQSQPPSSPQSKNSKSSNDVTV--DGDG 174
T FG P G D D + A ++K K+S P S+ + + K D +
Sbjct: 121 TCFGTLPSGKDQNGGKLDGNGRNSSGALDKKAKKS-PNSAASTISGKFDGSAAKQDDSEA 179
Query: 175 EMSHAFPKLSSFYEFFSLSHLTPPLQFIRKAPKRRVEEISPDDHLLSLDVKLCNGKMVNV 234
E+SH+ PKL +FY+FFSLSHLTPPLQFIR+ K+ V+ I PDDHL SL+ KLCNGK+ V
Sbjct: 180 EISHSCPKLGTFYDFFSLSHLTPPLQFIRRVTKQAVDGILPDDHLFSLEAKLCNGKVARV 239
Query: 235 EACRKGFYSVGKQRILCHNIVDLLGQLSRAFDNAYNELMNAFSERNKFGNLPYGFRANTW 294
E+CRKGF+SVGK +IL HN+VDLL QLSRAFDNAY +L+ AFSERNKFGNLPYGFRANTW
Sbjct: 240 ESCRKGFFSVGKHQILSHNLVDLLRQLSRAFDNAYRDLIKAFSERNKFGNLPYGFRANTW 299
Query: 295 LIPPIAAQSPSVFPPLPAEDEAWGGNGGGLGRDGKSDLIPWANEFLFVASMPCKTAEERQ 354
L+PP++AQ PSVFPPLP EDE WGGNGGGLGRDGKSDLIPWA+EFLF+ASMPCKTAEERQ
Sbjct: 300 LVPPVSAQLPSVFPPLPVEDETWGGNGGGLGRDGKSDLIPWASEFLFLASMPCKTAEERQ 359
Query: 355 IRDRKAFLLHNLFVDVAIFRAIKAVHHVMGKPEL-IYPSNCKILYTEIIGGLRIAIM-KD 412
IRDR+AFLLH+LFVDVAIFRAIKA+ HV+ ++ S ++L+TE +G L++ + KD
Sbjct: 360 IRDRRAFLLHSLFVDVAIFRAIKAIKHVITVSKVDRLVSEGEVLFTERVGDLKVTVAAKD 419
Query: 413 ASNACCKVDTKIDGSQATGVDKNNLVERNLLKGITADENTAAHDVATLGVVNVRYCGYIA 472
+A CKVDTKIDG QA G+D+ +LVE+NLLKGITADENTAAHD A LGV+NVRYCGYI+
Sbjct: 420 VPDASCKVDTKIDGIQAIGMDQKSLVEKNLLKGITADENTAAHDTAALGVINVRYCGYIS 479
Query: 473 VVKVQERENKKVGPLFQSIEL-EQPEGGANALNINSLRLLIHETTTLEDNKPAPNLQNLE 531
VKV+++EN+KV +Q IEL +QPEGGANALNINSLRLL+H+TT E N+ +LQ+++
Sbjct: 480 TVKVEQKENEKVSSQYQIIELLDQPEGGANALNINSLRLLLHQTTPSEHNRSLTHLQSMD 539
Query: 532 REELNASQMFVERLLEESIAKLEEEKPEREHFVRWELGACWIQHLQDQKNAEKDKKLSKE 591
+EEL A+Q F+E+LL+ES+ +LE+E+ + HFVRWELGACWIQHLQDQKN EKDKK S
Sbjct: 540 QEELGAAQAFIEKLLKESLVELEKEETQPNHFVRWELGACWIQHLQDQKNTEKDKKPS-- 597
Query: 592 KAKKLSNEKAKSEMKVEGLGTPLKSLKNNRKKSEGSNHKIHSETLKSQADGVNGESEKAT 651
+EKAK+EMKVEGLGTPLKSLKN +KK + K+ S S +DG+ GE++
Sbjct: 598 ------SEKAKNEMKVEGLGTPLKSLKN-KKKQDMKTLKMQSRN-DSSSDGMTGEND--- 646
Query: 652 SASIEARLESRDKENELALKNLLSDEAFARLKESETGLHCKSLEELIDLSHNYYVEVALP 711
++S EA E KENE+AL+ LS+E+F RLK +TGLHCKS++EL+DLS NYYVEVALP
Sbjct: 647 ASSCEAENEKNSKENEIALRRKLSEESFDRLKNLDTGLHCKSMQELVDLSQNYYVEVALP 706
Query: 712 KLVTDFGSLELSPVDGRTLTDFMHTRGLQMRSLGHVVKLSEKLSHVQSLCIHEMIVRAFK 771
KLV+DFGSLELSPVDGRTLTDFMHTRGLQMRSLGH+VKLSEKLSHVQSLCIHEMIVRAFK
Sbjct: 707 KLVSDFGSLELSPVDGRTLTDFMHTRGLQMRSLGHIVKLSEKLSHVQSLCIHEMIVRAFK 766
Query: 772 HIIQAVISAVGNTQRMAVSIAAALNLMLGVHESDGLNKSHNVHPLVWRWLELFLMKRYEW 831
HI++AVI+AV + +MAVS+AA LNL+LGV E+ K NVH LVWRWLELFLMKRYEW
Sbjct: 767 HILRAVIAAV-DIDKMAVSVAATLNLLLGVPENVDPQKPCNVHSLVWRWLELFLMKRYEW 825
Query: 832 DLNGLNFKDVRKFAILRGLCHKVGIELVSRDFDMDSPSPFRKIDVVSLVPVHKQAACSSA 891
D++ N++++RKFAILRG+CHKVGIELV RDFDMDSP PF+K DVVSLVPVHKQAACSSA
Sbjct: 826 DISSFNYRELRKFAILRGMCHKVGIELVPRDFDMDSPFPFQKSDVVSLVPVHKQAACSSA 885
Query: 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDF 951
DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDF
Sbjct: 886 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDF 945
Query: 952 NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 1011
NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC
Sbjct: 946 NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 1005
Query: 1012 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIAL 1071
GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIAL
Sbjct: 1006 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIAL 1065
Query: 1072 SLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD 1131
SLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD
Sbjct: 1066 SLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD 1125
Query: 1132 ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDNNLTSPDGSSKE 1191
ASIASKGHLSVSDLLDYINPSHD KGR+ + KRK Y+ K+KG + + S +E
Sbjct: 1126 ASIASKGHLSVSDLLDYINPSHDAKGRDAAA-KRKNYIVKLKGRSDHSATMAHGEESPQE 1184
Query: 1192 VLRESSDEETHAPEPESDTDVNQGSSIPFQQQELVVEESAVEKPNITEEISSAIHEEGDD 1251
+E SDEET P ++ ++ P + Q+ V EE+A E+P +++ S +H EG+D
Sbjct: 1185 TSKEVSDEETLVLVPGDVPSTDEETTTPVEVQQPVTEEAAEERPKTVDDVISELHPEGED 1244
Query: 1252 GWQPVQRLRSAGSYGRRLKQRRATIGKVHSYQKRNADAVIDYSSAKSSHHSSRYYLLKKR 1311
GWQ VQR RSAGSYGRRLKQRRAT GKV SYQK N D + K+++ +SR+Y+LKKR
Sbjct: 1245 GWQSVQRPRSAGSYGRRLKQRRATFGKVFSYQKMNIDVESEAHKLKNNNPNSRFYVLKKR 1304
Query: 1312 AVSHGSSADHHPVTTFHGTKFGRRVVKAVAYRVKSMPSSAKTGTVEASINGSEPSSSPSE 1371
+SHGS DHH + ++ G+KFGRR+VK + YRVKS+PSS +T TV ++ ++ SS +
Sbjct: 1305 TISHGSYTDHHSMNSYQGSKFGRRIVKTLTYRVKSIPSSTETATVVSATETADKVSSVVD 1364
Query: 1372 SRPASAPNDTSSVKNSIISLGKSPSYKEVAVAPPGTIAMLQVRVPQSDNPDNQEFSFGKP 1431
S +S P D SS+KN+I+SLGKSPSYKEVAVAPPGTIAMLQV+VPQSD +E
Sbjct: 1365 SGRSSTPIDASSLKNTIVSLGKSPSYKEVAVAPPGTIAMLQVKVPQSDTTGAEELRVEIH 1424
Query: 1432 EDGTMEEKENVNTNVTGAEKTNEEKSDSVLDATDNLKEETGVHPNREETHISDGLEDNPS 1491
E+ + E KE N SV++++D L+++ V +ET +E++PS
Sbjct: 1425 EEKSNEMKEISNI--------------SVVESSDLLEKDKQVEEKNDETQTGHTVENSPS 1470
Query: 1492 VVVSESERGVGSVV-DIHKVVQDGILINGIPNSIDSPTSEFYEKDSSESIESHDNTKSTL 1550
+VSE G+ S V D+++VV+D + + S S+ +D S ES DN S
Sbjct: 1471 QMVSEPVEGLQSCVADVNEVVEDNVPEDSTTYPGGSSESKPAVEDLSNDFES-DNFDSHE 1529
Query: 1551 QVVDDLKEKPSVFNPGDTRGLPNRKLSASAVPFNPSPAVARASAVAINMTLPPGPGAVTA 1610
Q +D K+K SV + GDTRGL N+KLSASA PFNPSP + RA+ VA+N+T+ PGP
Sbjct: 1530 Q-AEDSKDKSSVLSSGDTRGLNNKKLSASAAPFNPSPVIIRAAPVAMNITI-PGP---RG 1584
Query: 1611 VAPWPVNMTLHPRPATVLPTVNPMCSSPHQPYPSPPSTPNMMQPLPFMYPPYTQPQG--- 1667
+ PWPVNM +HP PA+VLPT+NP+CSSPHQPYPSPP TP MMQ +PF+YPPY+QPQ
Sbjct: 1585 IPPWPVNMNIHPGPASVLPTINPLCSSPHQPYPSPPPTPGMMQSMPFIYPPYSQPQAIPT 1644
Query: 1668 -------------VPTSTFPVTTSAFHHNHFSWQCNGNSNVPEFIPGPFLPGYHPMEFSV 1714
VPTSTFPVTTSAFH N F WQC+ N+N E +PG PG HP V
Sbjct: 1645 YTQPLSVPGYSQPVPTSTFPVTTSAFHPNXFPWQCSVNANPSERVPGTVWPGSHP----V 1700
Query: 1715 PPPVVEPILDPIMQPKAQSGDLDSSCSASILPENIDAVGDAEKEVDLLASKSMDNANEVA 1774
P PV + M+ +GD+ S +LP +ID +G+A+KE + L S+ M + N+ A
Sbjct: 1701 PSPVDSA--NDFMKDLNVNGDI----SLKVLPADIDTLGEAKKENNSLPSERMVSENKGA 1754
Query: 1775 GIGRETVRGEFVKENGHLNLCGTENAGSEPVHFTSQNQSLRRNVEREIEGEKTFSILVRG 1834
GI E V+E + N C E + T N +++ + E +E EKTFSIL+RG
Sbjct: 1755 GISLEN-----VEEKCNSNPCMVETST------TILNGNVKSSSEN-VEEEKTFSILIRG 1802
Query: 1835 RRNRKQTLRIPISLLSRPYGSQSFKVIYNRVIRGSEAPKSFSFSSTGDSTATA 1887
RRNRKQTLR+PISLLSRPYGSQSFKV YNRV+RGS+ K S+S++ + TA+A
Sbjct: 1803 RRNRKQTLRVPISLLSRPYGSQSFKVNYNRVVRGSDLSKFTSYSASKECTASA 1855
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449445826|ref|XP_004140673.1| PREDICTED: uncharacterized protein LOC101210514 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2331 bits (6041), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1231/1913 (64%), Positives = 1475/1913 (77%), Gaps = 84/1913 (4%)
Query: 1 MAPRNSRGKAK--NEKKKKEEKVLPVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVN 58
MAPRNS GK K ++KKKKEEKVLP V+DI+V LPDDT V+LKGISTD+IIDVRRLLSV
Sbjct: 1 MAPRNSHGKPKAHDKKKKKEEKVLPAVMDISVLLPDDTLVVLKGISTDKIIDVRRLLSVK 60
Query: 59 TETCSITNFSLSHEIRGPRLKDAVDVAALKPCVLSLTEEDFDEEGAAAHVRRVLDIVACT 118
TETC+ITNFSL ++RGPRLKD+VDV+ALKPC L+L EED+DEE AAAHVRR+LD+VACT
Sbjct: 61 TETCNITNFSLIQKVRGPRLKDSVDVSALKPCTLTLVEEDYDEELAAAHVRRLLDVVACT 120
Query: 119 TSFG--PCGFDAGKNVPDSKSAKKTTAKNEKDKQSQPPSSPQSKNSKSSNDVTV--DGDG 174
T FG P G D D + A ++K K+S P S+ + + K D +
Sbjct: 121 TCFGTLPSGKDQNGGKLDGNGRNSSGALDKKAKKS-PNSAASTISGKFDGSAAKQDDSEA 179
Query: 175 EMSHAFPKLSSFYEFFSLSHLTPPLQFIRKAPKRRVEEISPDDHLLSLDVKLCNGKMVNV 234
E+SH+ PKL +FY+FFSLSHLTPPLQFIR+ K+ V+ I PDDHL SL+ KLCNGK+ V
Sbjct: 180 EISHSCPKLGTFYDFFSLSHLTPPLQFIRRVTKQAVDGILPDDHLFSLEAKLCNGKVARV 239
Query: 235 EACRKGFYSVGKQRILCHNIVDLLGQLSRAFDNAYNELMNAFSERNKFGNLPYGFRANTW 294
E+CRKGF+SVGK +IL HN+VDLL QLSRAFDNAY +L+ AFSERNKFGNLPYGFRANTW
Sbjct: 240 ESCRKGFFSVGKHQILSHNLVDLLRQLSRAFDNAYRDLIKAFSERNKFGNLPYGFRANTW 299
Query: 295 LIPPIAAQSPSVFPPLPAEDEAWGGNGGGLGRDGKSDLIPWANEFLFVASMPCKTAEERQ 354
L+PP++AQ PSVFPPLP EDE WGGNGGGLGRDGKSDLIPWA+EFLF+ASMPCKTAEERQ
Sbjct: 300 LVPPVSAQLPSVFPPLPVEDETWGGNGGGLGRDGKSDLIPWASEFLFLASMPCKTAEERQ 359
Query: 355 IRDRKAFLLHNLFVDVAIFRAIKAVHHVMGKPEL-IYPSNCKILYTEIIGGLRIAIM-KD 412
IRDR+AFLLH+LFVDVAIFRAIKA+ HV+ ++ S ++L+TE +G L++ + KD
Sbjct: 360 IRDRRAFLLHSLFVDVAIFRAIKAIKHVITVSKVDRLVSEGEVLFTERVGDLKVTVAAKD 419
Query: 413 ASNACCKVDTKIDGSQATGVDKNNLVERNLLKGITADENTAAHDVATLGVVNVRYCGYIA 472
+A CKVDTKIDG QA G+D+ +LVE+NLLKGITADENTAAHD A LGV+NVRYCGYI+
Sbjct: 420 VPDASCKVDTKIDGIQAIGMDQKSLVEKNLLKGITADENTAAHDTAALGVINVRYCGYIS 479
Query: 473 VVKVQERENKKVGPLFQSIEL-EQPEGGANALNINSLRLLIHETTTLEDNKPAPNLQNLE 531
VKV+++EN+KV +Q IEL +QPEGGANALNINSLRLL+H+TT E N+ +LQ+++
Sbjct: 480 TVKVEQKENEKVSSQYQIIELLDQPEGGANALNINSLRLLLHQTTPSEHNRSLTHLQSMD 539
Query: 532 REELNASQMFVERLLEESIAKLEEEKPEREHFVRWELGACWIQHLQDQKNAEKDKKLSKE 591
+EEL A+Q F+E+LL+ES+ +LE+E+ + HFVRWELGACWIQHLQDQKN EKDKK S
Sbjct: 540 QEELGAAQAFIEKLLKESLVELEKEETQPNHFVRWELGACWIQHLQDQKNTEKDKKPS-- 597
Query: 592 KAKKLSNEKAKSEMKVEGLGTPLKSLKNNRKKSEGSNHKIHSETLKSQADGVNGESEKAT 651
+EKAK+EMKVEGLGTPLKSLKN +KK + K+ S S +DG+ GE++
Sbjct: 598 ------SEKAKNEMKVEGLGTPLKSLKN-KKKQDMKTLKMQSRN-DSSSDGMTGEND--- 646
Query: 652 SASIEARLESRDKENELALKNLLSDEAFARLKESETGLHCKSLEELIDLSHNYYVEVALP 711
++S EA E KENE+AL+ LS+E+F RLK +TGLHCKS++EL+DLS NYYVEVALP
Sbjct: 647 ASSCEAENEKNSKENEIALRRKLSEESFDRLKNLDTGLHCKSMQELVDLSQNYYVEVALP 706
Query: 712 KLVTDFGSLELSPVDGRTLTDFMHTRGLQMRSLGHVVKLSEKLSHVQSLCIHEMIVRAFK 771
KLV+DFGSLELSPVDGRTLTDFMHTRGLQMRSLGH+VKLSEKLSHVQSLCIHEMIVRAFK
Sbjct: 707 KLVSDFGSLELSPVDGRTLTDFMHTRGLQMRSLGHIVKLSEKLSHVQSLCIHEMIVRAFK 766
Query: 772 HIIQAVISAVGNTQRMAVSIAAALNLMLGVHESDGLNKSHNVHPLVWRWLELFLMKRYEW 831
HI++AVI+AV + +MAVS+AA LNL+LGV E+ K NVH LVWRWLELFLMKRYEW
Sbjct: 767 HILRAVIAAV-DIDKMAVSVAATLNLLLGVPENVDPQKPCNVHSLVWRWLELFLMKRYEW 825
Query: 832 DLNGLNFKDVRKFAILRGLCHKVGIELVSRDFDMDSPSPFRKIDVVSLVPVHKQAACSSA 891
D++ N++++RKFAILRG+CHKVGIELV RDFDMDSP PF+K DVVSLVPVHKQAACSSA
Sbjct: 826 DISSFNYRELRKFAILRGMCHKVGIELVPRDFDMDSPFPFQKSDVVSLVPVHKQAACSSA 885
Query: 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDF 951
DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDF
Sbjct: 886 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDF 945
Query: 952 NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 1011
NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC
Sbjct: 946 NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 1005
Query: 1012 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIAL 1071
GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIAL
Sbjct: 1006 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIAL 1065
Query: 1072 SLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD 1131
SLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD
Sbjct: 1066 SLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD 1125
Query: 1132 ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDNNLTSPDGSSKE 1191
ASIASKGHLSVSDLLDYINPSHD KGR+ + KRK Y+ K+KG + + S +E
Sbjct: 1126 ASIASKGHLSVSDLLDYINPSHDAKGRDAAA-KRKNYIVKLKGRSDHSATMAHGEESPQE 1184
Query: 1192 VLRESSDEETHAPEPESDTDVNQGSSIPFQQQELVVEESAVEKPNITEEISSAIHEEGDD 1251
+E SDEET P ++ ++ P + Q+ V EE+A E+P +++ S +H EG+D
Sbjct: 1185 TSKEVSDEETLVLVPGDVPSTDEETTTPVEVQQPVTEEAAEERPKTVDDVISELHPEGED 1244
Query: 1252 GWQPVQRLRSAGSYGRRLKQRRATIGKVHSYQKRNADAVIDYSSAKSSHHSSRYYLLKKR 1311
GWQ VQR RSAGSYGRRLKQRRAT GKV SYQK N D + K+++ +SR+Y+LKKR
Sbjct: 1245 GWQSVQRPRSAGSYGRRLKQRRATFGKVFSYQKMNIDVESEAHKLKNNNPNSRFYVLKKR 1304
Query: 1312 AVSHGSSADHHPVTTFHGTKFGRRVVKAVAYRVKSMPSSAKTGTVEASINGSEPSSSPSE 1371
+SHGS DHH + ++ G+KFGRR+VK + YRVKS+PSS +T TV ++ ++ SS +
Sbjct: 1305 TISHGSYTDHHSMNSYQGSKFGRRIVKTLTYRVKSIPSSTETATVVSATETADKVSSVVD 1364
Query: 1372 SRPASAPNDTSSVKNSIISLGKSPSYKEVAVAPPGTIAMLQVRVPQSDNPDNQEFSFGKP 1431
S +S P D SS+KN+I+SLGKSPSYKEVAVAPPGTIAMLQV+VPQSD +E
Sbjct: 1365 SGRSSTPIDASSLKNTIVSLGKSPSYKEVAVAPPGTIAMLQVKVPQSDTTGAEELRVEIH 1424
Query: 1432 EDGTMEEKENVNTNVTGAEKTNEEKSDSVLDATDNLKEETGVHPNREETHISDGLEDNPS 1491
E+ + E KE N SV++++D L+++ V +ET +E++PS
Sbjct: 1425 EEKSNEMKEISNI--------------SVVESSDLLEKDKQVEEKNDETQTGHTVENSPS 1470
Query: 1492 VVVSESERGVGSVV-DIHKVVQDGILINGIPNSIDSPTSEFYEKDSSESIESHDNTKSTL 1550
+VSE G+ S V D+++VV+D + + S S+ +D S ES DN S
Sbjct: 1471 QMVSEPVEGLQSCVADVNEVVEDNVPEDSTTYPGGSSESKPAVEDLSNDFES-DNFDSHE 1529
Query: 1551 QVVDDLKEKPSVFNPGDTRGLPNRKLSASAVPFNPSPAVARASAVAINMTLPPGPGAVTA 1610
Q +D K+K SV + GDTRGL N+KLSASA PFNPSP + RA+ VA+N+T+ PGP
Sbjct: 1530 Q-AEDSKDKSSVLSSGDTRGLNNKKLSASAAPFNPSPVIIRAAPVAMNITI-PGP---RG 1584
Query: 1611 VAPWPVNMTLHPRPATVLPTVNPMCSSPHQPYPSPPSTPNMMQPLPFMYPPYTQPQG--- 1667
+ PWPVNM +HP PA+VLPT+NP+CSSPHQPYPSPP TP MMQ +PF+YPPY+QPQ
Sbjct: 1585 IPPWPVNMNIHPGPASVLPTINPLCSSPHQPYPSPPPTPGMMQSMPFIYPPYSQPQAIPT 1644
Query: 1668 -------------VPTSTFPVTTSAFHHNHFSWQCNGNSNVPEFIPGPFLPGYHPMEFSV 1714
VPTSTFPVTTSAFH N F WQC+ N+N E +PG PG HP V
Sbjct: 1645 YTQPLSVPGYSQPVPTSTFPVTTSAFHPNPFPWQCSVNANPSERVPGTVWPGSHP----V 1700
Query: 1715 PPPVVEPILDPIMQPKAQSGDLDSSCSASILPENIDAVGDAEKEVDLLASKSMDNANEVA 1774
P PV + M+ +GD+ S +LP +ID +G+A+KE + L S+ M + N+ A
Sbjct: 1701 PSPVDSA--NDFMKDLNVNGDI----SLKVLPADIDTLGEAKKENNSLPSERMVSENKGA 1754
Query: 1775 GIGRETVRGEFVKENGHLNLCGTENAGSEPVHFTSQNQSLRRNVEREIEGEKTFSILVRG 1834
GI E V+E + N C E + T N +++ + E +E EKTFSIL+RG
Sbjct: 1755 GISLEN-----VEEKCNSNPCMVETST------TILNGNVKSSSEN-VEEEKTFSILIRG 1802
Query: 1835 RRNRKQTLRIPISLLSRPYGSQSFKVIYNRVIRGSEAPKSFSFSSTGDSTATA 1887
RRNRKQTLR+PISLLSRPYGSQSFKV YNRV+RGS+ K S+S++ + TA+A
Sbjct: 1803 RRNRKQTLRVPISLLSRPYGSQSFKVNYNRVVRGSDLSKFTSYSASKECTASA 1855
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334182214|ref|NP_001184884.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana] gi|332189151|gb|AEE27272.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2087 bits (5407), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1156/1926 (60%), Positives = 1403/1926 (72%), Gaps = 189/1926 (9%)
Query: 1 MAPRNSRGKAKNEKKKKEEKVLPVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTE 60
MAP+N+RGK K +KKKKEEKVLPV++D+ VNLPD+T ILKGISTDRIIDVRRLLSVN +
Sbjct: 1 MAPKNNRGKTKGDKKKKEEKVLPVIVDVIVNLPDETEAILKGISTDRIIDVRRLLSVNFD 60
Query: 61 TCSITNFSLSHEIRGPRLKDAVDVAALKPCVLSLTEEDFDEEGAAAHVRRVLDIVACTTS 120
TC +TN+SLSHEIRG RLKD VDV+ALKPCVL+LTEED++E A AHVRR+LDIVACTT
Sbjct: 61 TCHVTNYSLSHEIRGSRLKDTVDVSALKPCVLTLTEEDYNEGTAVAHVRRLLDIVACTTC 120
Query: 121 FGPCGFDAGKNVPDSKSAK-KTTAKNEKDKQSQPPSSPQSKNSKSSNDVTVDGDGEMSHA 179
FGP + + KSA+ K KN K + PP SP SK D VD GE SH+
Sbjct: 121 FGP----SPEKSDSVKSAQVKGGGKNSKQSDTSPPPSPASK------DTVVDEAGETSHS 170
Query: 180 FPKLSSFYEFFSLSHLTPPLQFIRKAPKRRVEEISPDDHLLSLDVKLCNGKMVNVEACRK 239
FPKL SFYEFFSL+HLTPPLQ+IR A KR E+I+ +DHLLS+DVKLCNGK+V++E CRK
Sbjct: 171 FPKLGSFYEFFSLAHLTPPLQYIRLATKRETEDIAKEDHLLSIDVKLCNGKLVHIEGCRK 230
Query: 240 GFYSVGKQRILCHNIVDLLGQLSRAFDNAYNELMNAFSERNKFGNLPYGFRANTWLIPPI 299
GFYS+GKQRI+CHN+VDLL Q+SRAFDNAY++L+ AFSERNKFGNLPYGFRANTWLIPP
Sbjct: 231 GFYSIGKQRIICHNLVDLLRQISRAFDNAYSDLLKAFSERNKFGNLPYGFRANTWLIPPT 290
Query: 300 AAQSPSVFPPLPAEDEAWGGNGGGLGRDGKSDLIPWANEFLFVASMPCKTAEERQIRDRK 359
AAQSP+ FPPLP EDE WGG+GGG GRDG DL+PW+NEF F+ASMPCKTAEERQ+RDRK
Sbjct: 291 AAQSPAAFPPLPVEDERWGGDGGGQGRDGSYDLVPWSNEFAFIASMPCKTAEERQVRDRK 350
Query: 360 AFLLHNLFVDVAIFRAIKAVHHVMGKPELIYPSNCKILYTEIIGGLRIAIMKDASNACCK 419
FLLHNLFVDVA FRAIKAV VM +P ++ + ++LY+E + L + + +D SNA K
Sbjct: 351 VFLLHNLFVDVATFRAIKAVQKVMAEP-VLAEEDSEVLYSETVRDLTVTVTRDTSNASSK 409
Query: 420 VDTKIDGSQATGVDKNNLVERNLLKGITADENTAAHDVATLGVVNVRYCGYIAVVKVQER 479
VDTKIDG QATG+DK L+ERNLLKG+TADENTAAHDVATLG ++++YCGYIAVVK+ E+
Sbjct: 410 VDTKIDGIQATGLDKKKLMERNLLKGLTADENTAAHDVATLGTISLKYCGYIAVVKL-EK 468
Query: 480 ENKKVGPLFQSIEL-EQPEGGANALNINSLRLLIHETTTLEDNKPAPNLQNLEREELNAS 538
E++++ P Q ++L EQPEGGANALNINSLR L+H+++ E NK P + +EL +S
Sbjct: 469 ESEELSPPSQIVDLLEQPEGGANALNINSLRFLLHKSSP-EQNKKTPQQHD---DELTSS 524
Query: 539 QMFVERLLEESIAKLEEEKPEREHFVRWELGACWIQHLQDQKNAEKDKKLSKEKAKKLSN 598
+ FV ++LEESIAKLE E+ +R+ +RWELGACWIQHLQDQKN EKDKK +
Sbjct: 525 REFVSKMLEESIAKLEGEEIDRDSIMRWELGACWIQHLQDQKNTEKDKKQT--------G 576
Query: 599 EKAKSEMKVEGLGTPLKSLKNNRKKSEGSNHKIHSETLKSQADGVNGESEKATSASIEAR 658
EK+K+E+KVEGLG PLKSL +++KK++ S+ K L SQ D V+ E++ T+AS+++
Sbjct: 577 EKSKNELKVEGLGKPLKSLNSSKKKTDVSSPKTPQTALSSQVDAVSSEAD--TAASLQSD 634
Query: 659 LESRDKENELALKNLLSDEAFARLKESETGLHCKSLEELIDLSHNYYVEVALPKLVTDFG 718
E +EN L LKNLLSD AF RLKES+TGLH KSL+EL+DL+ NYY EVA+PKLV DFG
Sbjct: 635 AEKNAQENVLILKNLLSDAAFTRLKESDTGLHHKSLQELVDLAQNYYTEVAIPKLVADFG 694
Query: 719 SLELSPVDGRTLTDFMHTRGLQMRSLGHVVKLSEKLSHVQSLCIHEMIVRAFKHIIQAVI 778
SLELSPVDGRTLTDFMHTRGL+MRSLG+VVKLS+KLSHVQSLC+HEMIVRA KHI+QAVI
Sbjct: 695 SLELSPVDGRTLTDFMHTRGLRMRSLGYVVKLSDKLSHVQSLCVHEMIVRALKHILQAVI 754
Query: 779 SAVG-NTQRMAVSIAAALNLMLGVHESDGLNKSH--NVHPLVWRWLELFLMKRYEWDLNG 835
SAV +T ++A+ +AAALN+MLG+ E+ + NVHPL++RWLE FL KRY++DLN
Sbjct: 755 SAVATDTDKIAIKVAAALNMMLGIPENVAATPHNPWNVHPLIFRWLEKFLKKRYDYDLNA 814
Query: 836 LNFKDVRKFAILRGLCHKVGIELVSRDFDMDSPSPFRKIDVVSLVPVHKQAACSSADGRQ 895
++KD+RKFAILRGLCHKVGIEL+ RDFDMDSP+PFRK DVVSLVPVHKQAACSSADGRQ
Sbjct: 815 FSYKDLRKFAILRGLCHKVGIELIPRDFDMDSPAPFRKTDVVSLVPVHKQAACSSADGRQ 874
Query: 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQAT 955
LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQAT
Sbjct: 875 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQAT 934
Query: 956 IYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 1015
IYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH
Sbjct: 935 IYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 994
Query: 1016 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLME 1075
PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLME
Sbjct: 995 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLME 1054
Query: 1076 AYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIA 1135
AY LSVQHEQTTL+ILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGT KPDASIA
Sbjct: 1055 AYHLSVQHEQTTLRILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTPKPDASIA 1114
Query: 1136 SKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG--NFYQDNNLTSPDGSSKEVL 1193
SKGHLSVSDLLDYINPSH+ KG+ KRK Y+ K K + ++ + P KE +
Sbjct: 1115 SKGHLSVSDLLDYINPSHNAKGKESVAAKRKNYILKEKSKQSNVSEHLVEIPREKQKE-M 1173
Query: 1194 RESSDEETHAPEPESDTDVNQG--SSIPFQQQELVVEESAVEKPN--ITEEISSA-IHEE 1248
E EET + E +S + ++ + + V+E++ ++ N + ++S+ H +
Sbjct: 1174 SEEDTEETGSEEGKSSEENHETILAPVEEPPSPPVIEDATMDNSNPITSSDVSTEPQHPD 1233
Query: 1249 G-DDGWQPVQRLRSAGSYGRRLKQRRATIGKVHSYQKRNADAVIDYSSAK-SSHHSSRYY 1306
G +DGWQPVQR RSAGSYGRR+KQRRA+IGKV++YQK+N +A ID + ++ + +YY
Sbjct: 1234 GSEDGWQPVQRPRSAGSYGRRMKQRRASIGKVYTYQKKNVEADIDNPLFQNATQQNDKYY 1293
Query: 1307 LLKKRAVSHGSSADHH-PVTTFHGTKFGRRVVKAVAYRVKS-MPSS--AKTGTVEASING 1362
+LKKR S+ S ADHH P T GTKFGR++VK +AYRVKS PSS AKT + +G
Sbjct: 1294 ILKKRTASYSSYADHHSPGLTTQGTKFGRKIVKTLAYRVKSTQPSSGNAKTAGETSEEDG 1353
Query: 1363 SEPSSSPSE--SRPASAPNDTSSVKNSIISLGKSPSYKEVAVAPPGTIAMLQVRVPQSDN 1420
+ +S E + ++ ++ KNS++SLGKSPSYKEVA+APPG+IA QV VPQ++
Sbjct: 1354 LKTDASSVEPPTLSSTVQSEAYHTKNSVVSLGKSPSYKEVALAPPGSIAKYQVWVPQAEV 1413
Query: 1421 PDNQEFSFGKPEDGTMEEKENVNTNVTGAEKTNEEKSDSVLDATDNLKEETGVHPNREET 1480
D QE D ME+K T++ E T +E+ + L+ + +K+E P E+
Sbjct: 1414 SDKQE-------DDEMEKKTEQGTSM---ELTRDEQMITGLE--EEVKKEISADP---ES 1458
Query: 1481 HISDGLEDNPSVVVSESERGV------------GSVVDIHKVVQDGILINGIPNSIDSPT 1528
+I+ G E+ V + SE GV G + + + V+ ++ +G+ + I S
Sbjct: 1459 NITQG-EEEIKVELQPSE-GVLGGSHINENDESGGGIQVEEQVEVELINDGVTDMIHSTR 1516
Query: 1529 SEFYEKDSSESIESHDNTKSTLQVVD-------DLKEKPSV--FNPGD-TRGL-PNRKLS 1577
+ QV+D DLK K S+ + GD +RGL PN+KLS
Sbjct: 1517 EQ--------------------QVIDQLAADSEDLKAKLSISTTDSGDASRGLLPNKKLS 1556
Query: 1578 ASAVPFNPS--PAVARASAVAINMTLPPGPGAVTAVAPWPVNMTLHPRPATVLPTVNPMC 1635
ASA PFNPS P++ R + + +N+ GP WPVNMTLH
Sbjct: 1557 ASAAPFNPSSPPSIIRPTPIGMNI----GPS-------WPVNMTLH-------------- 1591
Query: 1636 SSPHQPYPSPPSTPNMMQPLPFMYPP-YTQPQGVPTSTFPVTTSAFHHNHFSWQCNGNSN 1694
P PYPSPP+TPN+MQP+ F+YPP Y+Q VPTST+PVT+ FH N F WQ N
Sbjct: 1592 HGPPPPYPSPPTTPNLMQPMSFVYPPPYSQ--SVPTSTYPVTSGPFHPNQFPWQLN---- 1645
Query: 1695 VPEFIPGPFLPGYHPMEFSVPPPVVEPILDPIMQPKAQSGDLDSSCSASILPENIDAVGD 1754
V +F+P PG HP+EF P + EPI +++P ILP +ID G
Sbjct: 1646 VSDFVPRTVWPGCHPVEFPPPHMITEPIAATVLEPTV------------ILPTDIDTSGV 1693
Query: 1755 AEKEVDL----LASKSMDNANEVAGIGRETVRGEFVKENGHLNLCGTENAGSEPVHFTSQ 1810
E + +A + MD+ N V R E ENG N SE
Sbjct: 1694 EETKEGTQDVAVADEVMDSVNHV---NNAVARSE--TENG--------NRKSE------- 1733
Query: 1811 NQSLRRNVEREIEGEKTFSILVRGRRNRKQTLRIPISLLSRPYGSQSFKVIYNRVIRGSE 1870
EGEKTFSIL+RGRRNRKQTLR+PISLL+RPY SQ FK+ Y+RVIR SE
Sbjct: 1734 ------------EGEKTFSILLRGRRNRKQTLRMPISLLNRPYDSQPFKLGYSRVIRDSE 1781
Query: 1871 APKSFS 1876
APKS +
Sbjct: 1782 APKSVA 1787
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42561588|ref|NP_171639.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana] gi|332189150|gb|AEE27271.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2084 bits (5399), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1156/1935 (59%), Positives = 1403/1935 (72%), Gaps = 197/1935 (10%)
Query: 1 MAPRNSRGKAKNEKKKKEEKVLPVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTE 60
MAP+N+RGK K +KKKKEEKVLPV++D+ VNLPD+T ILKGISTDRIIDVRRLLSVN +
Sbjct: 1 MAPKNNRGKTKGDKKKKEEKVLPVIVDVIVNLPDETEAILKGISTDRIIDVRRLLSVNFD 60
Query: 61 TCSITNFSLSHEIRGPRLKDAVDVAALKPCVLSLTEEDFDEEGAAAHVRRVLDIVACTTS 120
TC +TN+SLSHEIRG RLKD VDV+ALKPCVL+LTEED++E A AHVRR+LDIVACTT
Sbjct: 61 TCHVTNYSLSHEIRGSRLKDTVDVSALKPCVLTLTEEDYNEGTAVAHVRRLLDIVACTTC 120
Query: 121 FGPCGFDAGKNVPDSKSAK-KTTAKNEKDKQSQPPSSPQSKNSKSSNDVTVDGDGEMSHA 179
FGP + + KSA+ K KN K + PP SP SK D VD GE SH+
Sbjct: 121 FGP----SPEKSDSVKSAQVKGGGKNSKQSDTSPPPSPASK------DTVVDEAGETSHS 170
Query: 180 FPKLSSFYEFFSLSHLTPPLQFIRKAPKRRVEEISPDDHLLSLDVKLCNGKMVNVEACRK 239
FPKL SFYEFFSL+HLTPPLQ+IR A KR E+I+ +DHLLS+DVKLCNGK+V++E CRK
Sbjct: 171 FPKLGSFYEFFSLAHLTPPLQYIRLATKRETEDIAKEDHLLSIDVKLCNGKLVHIEGCRK 230
Query: 240 GFYSVGKQRILCHNIVDLLGQLSRAFDNAYNELMNAFSERNKFGNLPYGFRANTWLIPPI 299
GFYS+GKQRI+CHN+VDLL Q+SRAFDNAY++L+ AFSERNKFGNLPYGFRANTWLIPP
Sbjct: 231 GFYSIGKQRIICHNLVDLLRQISRAFDNAYSDLLKAFSERNKFGNLPYGFRANTWLIPPT 290
Query: 300 AAQSPSVFPPLPAEDEAWGGNGGGLGRDGKSDLIPWANEFLFVASMPCKTAEERQIRDRK 359
AAQSP+ FPPLP EDE WGG+GGG GRDG DL+PW+NEF F+ASMPCKTAEERQ+RDRK
Sbjct: 291 AAQSPAAFPPLPVEDERWGGDGGGQGRDGSYDLVPWSNEFAFIASMPCKTAEERQVRDRK 350
Query: 360 AFLLHNLFVDVAIFRAIKAVHHVMGKPELIYPSNCKILYTEIIGGLRIAIMKDASNACCK 419
FLLHNLFVDVA FRAIKAV VM +P ++ + ++LY+E + L + + +D SNA K
Sbjct: 351 VFLLHNLFVDVATFRAIKAVQKVMAEP-VLAEEDSEVLYSETVRDLTVTVTRDTSNASSK 409
Query: 420 VDTKIDGSQATGVDKNNLVERNLLKGITADENTAAHDVATLGVVNVRYCGYIAVVKVQER 479
VDTKIDG QATG+DK L+ERNLLKG+TADENTAAHDVATLG ++++YCGYIAVVK+ E+
Sbjct: 410 VDTKIDGIQATGLDKKKLMERNLLKGLTADENTAAHDVATLGTISLKYCGYIAVVKL-EK 468
Query: 480 ENKKVGPLFQSIEL-EQPEGGANALNINSLRLLIHETTTLEDNKPAPNLQNLEREELNAS 538
E++++ P Q ++L EQPEGGANALNINSLR L+H+++ E NK P + +EL +S
Sbjct: 469 ESEELSPPSQIVDLLEQPEGGANALNINSLRFLLHKSSP-EQNKKTPQQHD---DELTSS 524
Query: 539 QMFVERLLEESIAKLEEEKPEREHFVRWELGACWIQHLQDQKNAEKDKKLSKEKAKKLSN 598
+ FV ++LEESIAKLE E+ +R+ +RWELGACWIQHLQDQKN EKDKK +
Sbjct: 525 REFVSKMLEESIAKLEGEEIDRDSIMRWELGACWIQHLQDQKNTEKDKKQT--------G 576
Query: 599 EKAKSEMKVEGLGTPLKSLKNNRKKSEGSNHKIHSETLKSQADGVNGESEKATSASIEAR 658
EK+K+E+KVEGLG PLKSL +++KK++ S+ K L SQ D V+ E++ T+AS+++
Sbjct: 577 EKSKNELKVEGLGKPLKSLNSSKKKTDVSSPKTPQTALSSQVDAVSSEAD--TAASLQSD 634
Query: 659 LESRDKENELALKNLLSDEAFARLKESETGLHCKSLEELIDLSHNYYVEVALPKLVTDFG 718
E +EN L LKNLLSD AF RLKES+TGLH KSL+EL+DL+ NYY EVA+PKLV DFG
Sbjct: 635 AEKNAQENVLILKNLLSDAAFTRLKESDTGLHHKSLQELVDLAQNYYTEVAIPKLVADFG 694
Query: 719 SLELSPVDGRTLTDFMHTRGLQMRSLGHVVKLSEKLSHVQSLCIHEMIVRAFKHIIQAVI 778
SLELSPVDGRTLTDFMHTRGL+MRSLG+VVKLS+KLSHVQSLC+HEMIVRA KHI+QAVI
Sbjct: 695 SLELSPVDGRTLTDFMHTRGLRMRSLGYVVKLSDKLSHVQSLCVHEMIVRALKHILQAVI 754
Query: 779 SAVG-NTQRMAVSIAAALNLMLGVHESDGLNKSH--NVHPLVWRWLELFLMKRYEWDLNG 835
SAV +T ++A+ +AAALN+MLG+ E+ + NVHPL++RWLE FL KRY++DLN
Sbjct: 755 SAVATDTDKIAIKVAAALNMMLGIPENVAATPHNPWNVHPLIFRWLEKFLKKRYDYDLNA 814
Query: 836 LNFKDVRKFAILRGLCHKVGIELVSRDFDMDSPSPFRKIDVVSLVPVHK--------QAA 887
++KD+RKFAILRGLCHKVGIEL+ RDFDMDSP+PFRK DVVSLVPVHK QAA
Sbjct: 815 FSYKDLRKFAILRGLCHKVGIELIPRDFDMDSPAPFRKTDVVSLVPVHKTFYFKSMQQAA 874
Query: 888 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH 947
CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH
Sbjct: 875 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH 934
Query: 948 TGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 1007
TGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL
Sbjct: 935 TGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 994
Query: 1008 HLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAI 1067
HLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAI
Sbjct: 995 HLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAI 1054
Query: 1068 AIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGT 1127
AIALSLMEAY LSVQHEQTTL+ILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGT
Sbjct: 1055 AIALSLMEAYHLSVQHEQTTLRILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGT 1114
Query: 1128 RKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDN---NLTS 1184
KPDASIASKGHLSVSDLLDYINPSH+ KG+ KRK Y+ K+K Q N +L
Sbjct: 1115 PKPDASIASKGHLSVSDLLDYINPSHNAKGKESVAAKRKNYILKLKEKSKQSNVSEHLVE 1174
Query: 1185 PDGSSKEVLRESSDEETHAPEPESDTDVNQG--SSIPFQQQELVVEESAVEKPN--ITEE 1240
++ + E EET + E +S + ++ + + V+E++ ++ N + +
Sbjct: 1175 IPREKQKEMSEEDTEETGSEEGKSSEENHETILAPVEEPPSPPVIEDATMDNSNPITSSD 1234
Query: 1241 ISSA-IHEEG-DDGWQPVQRLRSAGSYGRRLKQRRATIGKVHSYQKRNADAVIDYSSAK- 1297
+S+ H +G +DGWQPVQR RSAGSYGRR+KQRRA+IGKV++YQK+N +A ID +
Sbjct: 1235 VSTEPQHPDGSEDGWQPVQRPRSAGSYGRRMKQRRASIGKVYTYQKKNVEADIDNPLFQN 1294
Query: 1298 SSHHSSRYYLLKKRAVSHGSSADHH-PVTTFHGTKFGRRVVKAVAYRVKS-MPSS--AKT 1353
++ + +YY+LKKR S+ S ADHH P T GTKFGR++VK +AYRVKS PSS AKT
Sbjct: 1295 ATQQNDKYYILKKRTASYSSYADHHSPGLTTQGTKFGRKIVKTLAYRVKSTQPSSGNAKT 1354
Query: 1354 GTVEASINGSEPSSSPSE--SRPASAPNDTSSVKNSIISLGKSPSYKEVAVAPPGTIAML 1411
+ +G + +S E + ++ ++ KNS++SLGKSPSYKEVA+APPG+IA
Sbjct: 1355 AGETSEEDGLKTDASSVEPPTLSSTVQSEAYHTKNSVVSLGKSPSYKEVALAPPGSIAKY 1414
Query: 1412 QVRVPQSDNPDNQEFSFGKPEDGTMEEKENVNTNVTGAEKTNEEKSDSVLDATDNLKEET 1471
QV VPQ++ D QE D ME+K T++ E T +E+ + L+ + +K+E
Sbjct: 1415 QVWVPQAEVSDKQE-------DDEMEKKTEQGTSM---ELTRDEQMITGLE--EEVKKEI 1462
Query: 1472 GVHPNREETHISDGLEDNPSVVVSESERGV------------GSVVDIHKVVQDGILING 1519
P E++I+ G E+ V + SE GV G + + + V+ ++ +G
Sbjct: 1463 SADP---ESNITQG-EEEIKVELQPSE-GVLGGSHINENDESGGGIQVEEQVEVELINDG 1517
Query: 1520 IPNSIDSPTSEFYEKDSSESIESHDNTKSTLQVVD-------DLKEKPSV--FNPGD-TR 1569
+ + I S + QV+D DLK K S+ + GD +R
Sbjct: 1518 VTDMIHSTREQ--------------------QVIDQLAADSEDLKAKLSISTTDSGDASR 1557
Query: 1570 GL-PNRKLSASAVPFNPS--PAVARASAVAINMTLPPGPGAVTAVAPWPVNMTLHPRPAT 1626
GL PN+KLSASA PFNPS P++ R + + +N+ GP WPVNMTLH
Sbjct: 1558 GLLPNKKLSASAAPFNPSSPPSIIRPTPIGMNI----GPS-------WPVNMTLH----- 1601
Query: 1627 VLPTVNPMCSSPHQPYPSPPSTPNMMQPLPFMYPP-YTQPQGVPTSTFPVTTSAFHHNHF 1685
P PYPSPP+TPN+MQP+ F+YPP Y+Q VPTST+PVT+ FH N F
Sbjct: 1602 ---------HGPPPPYPSPPTTPNLMQPMSFVYPPPYSQ--SVPTSTYPVTSGPFHPNQF 1650
Query: 1686 SWQCNGNSNVPEFIPGPFLPGYHPMEFSVPPPVVEPILDPIMQPKAQSGDLDSSCSASIL 1745
WQ N V +F+P PG HP+EF P + EPI +++P IL
Sbjct: 1651 PWQLN----VSDFVPRTVWPGCHPVEFPPPHMITEPIAATVLEPTV------------IL 1694
Query: 1746 PENIDAVGDAEKEVDL----LASKSMDNANEVAGIGRETVRGEFVKENGHLNLCGTENAG 1801
P +ID G E + +A + MD+ N V R E ENG N
Sbjct: 1695 PTDIDTSGVEETKEGTQDVAVADEVMDSVNHV---NNAVARSE--TENG--------NRK 1741
Query: 1802 SEPVHFTSQNQSLRRNVEREIEGEKTFSILVRGRRNRKQTLRIPISLLSRPYGSQSFKVI 1861
SE EGEKTFSIL+RGRRNRKQTLR+PISLL+RPY SQ FK+
Sbjct: 1742 SE-------------------EGEKTFSILLRGRRNRKQTLRMPISLLNRPYDSQPFKLG 1782
Query: 1862 YNRVIRGSEAPKSFS 1876
Y+RVIR SEAPKS +
Sbjct: 1783 YSRVIRDSEAPKSVA 1797
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297745448|emb|CBI40528.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2071 bits (5367), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1065/1509 (70%), Positives = 1214/1509 (80%), Gaps = 82/1509 (5%)
Query: 1 MAPRNSRGKAKNEKKKKEEKVLPVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTE 60
MAP++ RGK + +KKKKEEKVLPVV+D+TVNLPD+T VILKGISTDRIIDVRRLLSVNT
Sbjct: 1 MAPKSGRGKQRGDKKKKEEKVLPVVMDVTVNLPDETSVILKGISTDRIIDVRRLLSVNTI 60
Query: 61 TCSITNFSLSHEIRGPRLKDAVDVAALKPCVLSLTEEDFDEEGAAAHVRRVLDIVACTTS 120
TC+ITNFSLSHE+RGP LKD VDVAALKPCVL+L EED+DE+ AAAHVRRVLDIVACTT
Sbjct: 61 TCNITNFSLSHEVRGPGLKDTVDVAALKPCVLTLVEEDYDEDTAAAHVRRVLDIVACTTC 120
Query: 121 FGPCGFDAGKNVPDSKSAKKTTAKNEKDKQSQPPSSPQSKNSKSSNDVTV--------DG 172
FGP DAGKN A+ +DK S SS N+K S+ + +G
Sbjct: 121 FGPSPSDAGKN-----------AQGAQDKNSGNKSSKALANAKQSSSSSPPPTPSSANEG 169
Query: 173 DGEMSHAFPKLSSFYEFFSLSHLTPPLQFIRKAPKRRVEEISPDDHLLSLDVKLCNGKMV 232
+GEMS++ PKL SFYEFFSLSHLTPPLQFIR+A K +EI DHL SL+VKLCNGK+V
Sbjct: 170 EGEMSNSCPKLGSFYEFFSLSHLTPPLQFIRRARKWHDDEILVHDHLFSLEVKLCNGKLV 229
Query: 233 NVEACRKGFYSVGKQRILCHNIVDLLGQLSRAFDNAYNELMNAFSERNKFGNLPYGFRAN 292
VE CR+GFYS+GKQRILCHN+VDLL QLSRAFDNAY++LM AFSERNKFGNLPYGFRAN
Sbjct: 230 LVEVCRRGFYSIGKQRILCHNLVDLLRQLSRAFDNAYDDLMKAFSERNKFGNLPYGFRAN 289
Query: 293 TWLIPPIAAQSPSVFPPLPAEDEAWGGNGGGLGRDGKSDLIPWANEFLFVASMPCKTAEE 352
TWLIPP+AAQ P++FPPLP EDE WGG+GGG GRDGKSDLIPWANEFL +ASMPCKTAEE
Sbjct: 290 TWLIPPVAAQLPAIFPPLPVEDETWGGSGGGQGRDGKSDLIPWANEFLLLASMPCKTAEE 349
Query: 353 RQIRDRKAFLLHNLFVDVAIFRAIKAVHHVMGKPELIYPS-NCKILYTEIIGGLRIAIMK 411
RQIRDRKAFLLH+LFVDVAIFRAI AV HVMGK +L + S N +ILY+E +G L I +MK
Sbjct: 350 RQIRDRKAFLLHSLFVDVAIFRAISAVQHVMGKLDLTHSSVNSEILYSERVGDLTIIVMK 409
Query: 412 DASNACCKVDTKIDGSQATGVDKNNLVERNLLKGITADENTAAHDVATLGVVNVRYCGYI 471
DA+NA CKVDTKIDG QATGV + NLVERNLLKGITADENTAAHD ATLGVVNVRYCGYI
Sbjct: 410 DATNASCKVDTKIDGIQATGVGQQNLVERNLLKGITADENTAAHDFATLGVVNVRYCGYI 469
Query: 472 AVVKVQERENKKVGPLFQSIE-LEQPEGGANALNINSLRLLIHETTTLEDNKPAPNLQNL 530
AVVK++ +E+ K+ FQSIE L+QPEGGANALNINSLRLL+H+ T E+NK + Q L
Sbjct: 470 AVVKLEGKESSKMDTHFQSIELLDQPEGGANALNINSLRLLLHQRTASENNKLVQHSQTL 529
Query: 531 EREELNASQMFVERLLEESIAKLEEEKPEREHFVRWELGACWIQHLQDQKNAEKDKKLSK 590
E EEL+A+Q FVE LLEES+AKL+EE+ E+ FVRWELGACWIQHLQDQ N EKD
Sbjct: 530 EHEELSAAQAFVEGLLEESLAKLQEEEVEKHIFVRWELGACWIQHLQDQNNTEKD----- 584
Query: 591 EKAKKLSNEKAKSEMKVEGLGTPLKSLKNNRKKSEGSNHKIHSETLKSQADGVNGESEKA 650
KK S K K+EMKVEGL + V GE+E +
Sbjct: 585 ---KKPSTAKTKNEMKVEGL------------------------------ESVIGEAENS 611
Query: 651 TSASIEARLESRDKENELALKNLLSDEAFARLKESETGLHCKSLEELIDLSHNYYVEVAL 710
T +S + +LE+ ENELALK +LSD AFARLK+SETGLH KSL+EL+DLS YY EVAL
Sbjct: 612 TLSSTKPQLEANANENELALKRMLSDAAFARLKQSETGLHRKSLQELVDLSQKYYSEVAL 671
Query: 711 PKLVTDFGSLELSPVDGRTLTDFMHTRGLQMRSLGHVVKLSEKLSHVQSLCIHEMIVRAF 770
PKLV DFGSLELSPVDGRTLTDFMHTRGL+MRSLGHVVKLSEKLSHVQSLCIHEMIVRAF
Sbjct: 672 PKLVADFGSLELSPVDGRTLTDFMHTRGLRMRSLGHVVKLSEKLSHVQSLCIHEMIVRAF 731
Query: 771 KHIIQAVISAVGNTQRMAVSIAAALNLMLGVHESDGLNKSHNVHPLVWRWLELFLMKRYE 830
KHI+QAVI+AV N +++A+SIAAALNLMLGV + LN+S N HPLVWRWLE+FL KRYE
Sbjct: 732 KHILQAVIAAVVNPEKLAMSIAAALNLMLGVPGNRELNQSCNAHPLVWRWLEVFLKKRYE 791
Query: 831 WDLNGLNFKDVRKFAILRGLCHKVGIELVSRDFDMDSPSPFRKIDVVSLVPVHKQAACSS 890
WD + LN+KDVRKFA+LRGLCHKVGIELV RDFDMDSP PF+K+DV+SLVPVHKQAACSS
Sbjct: 792 WDFSTLNYKDVRKFAVLRGLCHKVGIELVPRDFDMDSPYPFQKLDVISLVPVHKQAACSS 851
Query: 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD 950
ADGRQLLESSKTALDKGKLEDAV+YGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD
Sbjct: 852 ADGRQLLESSKTALDKGKLEDAVSYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD 911
Query: 951 FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010
FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT
Sbjct: 912 FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 971
Query: 1011 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIA 1070
CGPSHPNTAATYINVAMMEEGLG+VHVALRYLHKALKCNQ+LLGPDHIQTAASYHAIAIA
Sbjct: 972 CGPSHPNTAATYINVAMMEEGLGHVHVALRYLHKALKCNQKLLGPDHIQTAASYHAIAIA 1031
Query: 1071 LSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKP 1130
LSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKP
Sbjct: 1032 LSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKP 1091
Query: 1131 DASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDNNLTSPDGSSK 1190
DASIASKGHLSVSDLLDYINPS D KGR+ T+KRK+Y+AKVKG YQD +L SP+ S K
Sbjct: 1092 DASIASKGHLSVSDLLDYINPSQDAKGRDAVTVKRKSYIAKVKGTSYQDFSLASPEDSPK 1151
Query: 1191 EVLRESSDEETHAPEPESDTDVN---QGSSIPFQQQELVVEESAVEKPNITEEISSAIHE 1247
+ +E+SDEE E D N + +S+P +Q V++E++ + PNI E SS +
Sbjct: 1152 DTPKETSDEEKQIRESGGSVDTNHETRFASVPAEQP--VMDEASGDTPNIGNETSSETNA 1209
Query: 1248 EGDDGWQPVQRLRSAGSYGRRLKQRRATIGKVHSYQKRNADAVIDYSSAKSSHHSSRYYL 1307
EG+DGWQ VQR RSAGSYGRR++QRR TI KV+SYQK++ D +DYS K+++ +SRYY+
Sbjct: 1210 EGEDGWQSVQRPRSAGSYGRRIRQRRTTISKVYSYQKKDVDTELDYSQVKNTYQNSRYYM 1269
Query: 1308 LKKRAVSHGSSADHHPVTTFHGTKFGRRVVKAVAYRVKSMPSSAKTGTVEASINGSEPSS 1367
LK+R +S GS+ D+H + GTKFGRR+VKAV YRVKS+PS+ KT T
Sbjct: 1270 LKRRTISAGST-DYHTSGSSPGTKFGRRIVKAVTYRVKSVPST-KTAT------------ 1315
Query: 1368 SPSESRPASAPNDTS--SVKNSIISLGKSPSYKEVAVAPPGTIAMLQVRVPQSDNPDNQE 1425
E+ SAPND S S K S++SLGKS SYKEVA+APPGTIA +QV V Q+D PDN++
Sbjct: 1316 -KLETGTISAPNDMSPISQKKSVVSLGKSLSYKEVALAPPGTIAKMQVTVFQNDIPDNRQ 1374
Query: 1426 FSFGKPEDGTMEEKENVNTNVTGAEKTN-EEKSDSVLDATDNLKEETGVHPNREETHISD 1484
GKPE T E E+ ++ +T A N EE S+L + D LK+E V + ET D
Sbjct: 1375 LDVGKPEVETNEPSESTDSMITEAVNINAEENKISILHSKDYLKDEVEVVEKKNETQSGD 1434
Query: 1485 GLEDNPSVV 1493
+ + PS +
Sbjct: 1435 AIGNIPSEI 1443
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297842986|ref|XP_002889374.1| tetratricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297335216|gb|EFH65633.1| tetratricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 2062 bits (5343), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1148/1929 (59%), Positives = 1399/1929 (72%), Gaps = 189/1929 (9%)
Query: 1 MAPRNSRGKAKNEKKKKEEKVLPVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTE 60
MAP+N+RGK K +KKKKEEKVLPV++D+ VNLPD+T ILKGISTDRIIDVRRLLSVN +
Sbjct: 1 MAPKNNRGKTKGDKKKKEEKVLPVIVDVIVNLPDETEAILKGISTDRIIDVRRLLSVNFD 60
Query: 61 TCSITNFSLSHEIRGPRLKDAVDVAALKPCVLSLTEEDFDEEGAAAHVRRVLDIVACTTS 120
TC +TN+SLSHEIRG RLKD VDV+ALKPCVL+LTEED++E A AHVRR+LDIVACTT
Sbjct: 61 TCHVTNYSLSHEIRGSRLKDTVDVSALKPCVLTLTEEDYNEGTAVAHVRRLLDIVACTTC 120
Query: 121 FGPCGFDAGKNVPDSKSAK-KTTAKNEKDKQSQPPSSPQSKNSKSSNDVTVDGDGEMSHA 179
FGP + + KSA+ K KN K ++ PP SP SK D VD GE SH+
Sbjct: 121 FGP----SPEKSDSVKSAQVKGGGKNSKHSETSPPPSPASK------DAVVDEAGETSHS 170
Query: 180 FPKLSSFYEFFSLSHLTPPLQFIRKAPKRRVEEISPDDHLLSLDVKLCNGKMVNVEACRK 239
FPKL SFYE FSL+HLTPPLQ+IR KR E+I+ +DHLLS+DVKLCNGK+V++E CRK
Sbjct: 171 FPKLGSFYELFSLAHLTPPLQYIRLVTKRETEDIAAEDHLLSIDVKLCNGKIVHIEGCRK 230
Query: 240 GFYSVGKQRILCHNIVDLLGQLSRAFDNAYNELMNAFSERNKFGNLPYGFRANTWLIPPI 299
GFYS+GKQRI+CHN+VDLL Q+SRAFDNAY++L+ AFSERNKFGNLPYGFRANTWLIPP
Sbjct: 231 GFYSIGKQRIICHNLVDLLRQISRAFDNAYSDLLKAFSERNKFGNLPYGFRANTWLIPPT 290
Query: 300 AAQSPSVFPPLPAEDEAWGGNGGGLGRDGKSDLIPWANEFLFVASMPCKTAEERQIRDRK 359
AAQSP+ FPPLP EDE WGG+GGG GRDG DL+PW+NEF F+ASMPCKTAEERQ+RDRK
Sbjct: 291 AAQSPAEFPPLPVEDERWGGDGGGQGRDGSYDLVPWSNEFAFIASMPCKTAEERQVRDRK 350
Query: 360 AFLLHNLFVDVAIFRAIKAVHHVMGKPELIYPSNCKILYTEIIGGLRIAIMKDASNACCK 419
FLLHNLFVDVA FRAIKAV VM +P ++ + ++LY+E +G L + + +D SNA K
Sbjct: 351 VFLLHNLFVDVATFRAIKAVQKVMAEP-VLAEEDSEVLYSETVGDLSVTVTRDTSNASSK 409
Query: 420 VDTKIDGSQATGVDKNNLVERNLLKGITADENTAAHDVATLGVVNVRYCGYIAVVKVQER 479
VDTKIDG QATG+DK L+ERNLLKG+TADENTAAH VATLG ++++YCGYIAVVK+ E+
Sbjct: 410 VDTKIDGIQATGLDKKKLMERNLLKGLTADENTAAHVVATLGTISLKYCGYIAVVKI-EK 468
Query: 480 ENKKVGPLFQSIEL-EQPEGGANALNINSLRLLIHETTTLEDNKPAPNLQNLEREELNAS 538
E+ +V P Q ++L EQPEGGANALNINSLR L+H+++ LE NK P Q+ +EL +S
Sbjct: 469 ESGEVSPPSQIVDLLEQPEGGANALNINSLRFLLHKSS-LEQNKKTPQQQD---DELTSS 524
Query: 539 QMFVERLLEESIAKLEEEKPEREHFVRWELGACWIQHLQDQKNAEKDKKLSKEKAKKLSN 598
+ FV ++LEESI KLEEE+ +R+ +RWELGACWIQHLQDQKN EKDKK + +
Sbjct: 525 REFVSKMLEESIVKLEEEEIDRDSIMRWELGACWIQHLQDQKNTEKDKKQT--------S 576
Query: 599 EKAKSEMKVEGLGTPLKSLKNNRKKSEGSNHKIHSETLKSQADGVNGESE-KATSASIEA 657
EK+K+E+KVEGLG PLKSL +++KK++ ++ K + SQ D ++ E++ AT+AS+++
Sbjct: 577 EKSKNELKVEGLGKPLKSLNSSKKKTDVNSPKT---PVSSQVDAISSEADIAATTASLQS 633
Query: 658 RLESRDKENELALKNLLSDEAFARLKESETGLHCKSLEELIDLSHNYYVEVALPKLVTDF 717
E +EN L LKNLLSD AF RLKES+TGLH KSL+EL+DL+ NYY EVA+PKLV DF
Sbjct: 634 DAEKNAQENVLILKNLLSDAAFTRLKESDTGLHHKSLQELVDLAQNYYTEVAIPKLVADF 693
Query: 718 GSLELSPVDGRTLTDFMHTRGLQMRSLGHVVKLSEKLSHVQSLCIHEMIVRAFKHIIQAV 777
GSLELSPVDGRTLTDFMHTRGL+MRSLG+VVKLS+KLSHVQSLC+HEMIVRA KHI+QAV
Sbjct: 694 GSLELSPVDGRTLTDFMHTRGLRMRSLGYVVKLSDKLSHVQSLCVHEMIVRALKHILQAV 753
Query: 778 ISAVG-NTQRMAVSIAAALNLMLGVHESDGL--NKSHNVHPLVWRWLELFLMKRYEWDLN 834
ISAV +T ++A +AAALN+MLG+ E+ + S NV PL++RWLE FL KRY++DLN
Sbjct: 754 ISAVATDTDKVATKVAAALNMMLGIPENVAAAPHNSWNVDPLIFRWLEKFLKKRYDYDLN 813
Query: 835 GLNFKDVRKFAILRGLCHKVGIELVSRDFDMDSPSPFRKIDVVSLVPVHK--------QA 886
++KD+RKFAILRGLCHKVGIEL+ RDFDMDSP+PFRK DVVSLVPVHK QA
Sbjct: 814 AFSYKDLRKFAILRGLCHKVGIELIPRDFDMDSPAPFRKTDVVSLVPVHKTFYLKSLQQA 873
Query: 887 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLY 946
ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLY
Sbjct: 874 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLY 933
Query: 947 HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006
HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL
Sbjct: 934 HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 993
Query: 1007 LHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHA 1066
LHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHA
Sbjct: 994 LHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHA 1053
Query: 1067 IAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNG 1126
IAIALSLMEAY LSVQHEQTTL+ILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNG
Sbjct: 1054 IAIALSLMEAYHLSVQHEQTTLRILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNG 1113
Query: 1127 TRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDN------ 1180
T KPDASIASKGHLSV DLLDYINPS + KG+ KRK Y+ K+K Q N
Sbjct: 1114 TPKPDASIASKGHLSVFDLLDYINPSQNAKGKESVAAKRKNYIMKLKEKSKQSNVSDHLA 1173
Query: 1181 NLTSPDGSSKEVLRESSDEETHAPEPESDTD-------VNQGSSIPFQQQELVVEESAVE 1233
+P + KE+ E ++E S+ + V + S P V+EE+ ++
Sbjct: 1174 VADTPRENQKEMSEEETEETGSEEGKSSEDNHDTILAPVEESPSPP------VIEEAIMD 1227
Query: 1234 KPN--ITEEISSAI-HEEG-DDGWQPVQRLRSAGSYGRRLKQRRATIGKVHSYQKRNADA 1289
N + E+S+ + H +G +DGWQPVQR RS GSYGRR+KQRRA+IGKV++YQK+N +
Sbjct: 1228 NSNPITSGEVSTELQHPDGSEDGWQPVQRPRSTGSYGRRMKQRRASIGKVYTYQKKNVET 1287
Query: 1290 VIDYSSAK-SSHHSSRYYLLKKRAVSHGSSADHH-PVTTFHGTKFGRRVVKAVAYRVKSM 1347
ID + ++ + +YY+LKKR S+ S ADHH P T GTKFGR++VK +AYRVKSM
Sbjct: 1288 DIDNPLFQNATKQNGKYYILKKRTASYASYADHHSPGLTTQGTKFGRKIVKTLAYRVKSM 1347
Query: 1348 -PSSAKTGTV-----EASINGSEPSSSPSESRPASAPNDTSSVKNSIISLGKSPSYKEVA 1401
PSS T T E + S PS + ++ ++ KNS++SLGKSPSYKEVA
Sbjct: 1348 QPSSGSTKTAGETSEEDGLKTDASSVEPS-TLSSTVQSEAYHTKNSVVSLGKSPSYKEVA 1406
Query: 1402 VAPPGTIAMLQVRVPQSDNPDNQEFSFGKPEDGTMEEKENVNTNVTGAEKTNEEKSDSVL 1461
+APPG+IA QV VPQ++ D Q ED +E+K T++ E T +EK + L
Sbjct: 1407 LAPPGSIAKYQVWVPQAEVSDKQ-------EDDEVEKKTEQGTSM---ELTGDEKMITGL 1456
Query: 1462 --DATDNLKEETGVHPNREETHISDGLEDNPSVV----VSESERGVGSVVDIHKVVQDGI 1515
+ + +T + + E I L+ + VV ++E+E G + + + V+ +
Sbjct: 1457 EEEVKKEISADTESNRTQGEEEIKVELQPSEGVVGGNLLNENEES-GGGIQVEEQVEPKL 1515
Query: 1516 LINGIPNSIDSP-TSEFYEKDSSESIESHDNTKSTLQVVDDLKEK--PSVFNPGD-TRG- 1570
+ + + + I S E ++ +++S +DLK K S + GD +RG
Sbjct: 1516 IDDRVTDMIHSTREQEVIDQLAADS--------------EDLKAKLLISTTDSGDASRGL 1561
Query: 1571 LPNRKLSASAVPFNPS--PAVARASAVAINMTLPPGPGAVTAVAPWPVNMTLHPRPATVL 1628
LPN+KLSASA PFNPS P++ R + + +N+ GP WPVNMTLH
Sbjct: 1562 LPNKKLSASAAPFNPSSPPSIVRPTPIGMNI----GPS-------WPVNMTLH------- 1603
Query: 1629 PTVNPMCSSPHQPYPSPPSTPNMMQPLPFMY-PPYTQPQGVPTSTFPVTTSAFHHNHFSW 1687
P PYPSPP+TPN+MQP+ F+Y PPYT Q VPTST+PVT+ FH N F W
Sbjct: 1604 -------HGPPPPYPSPPTTPNLMQPMSFVYPPPYT--QSVPTSTYPVTSGPFHPNQFPW 1654
Query: 1688 QCNGNSNVPEFIPGPFLPGYHPMEFSVPPPVVEPILDPIMQPKAQSGDLDSSCSASILPE 1747
Q N + +F+P PG HP+EF P + EPI +++P ILP
Sbjct: 1655 QLNAS----DFVPRTVWPGCHPVEFPPPHMITEPIAATVLEPTV------------ILPT 1698
Query: 1748 NIDAVGDAEKEVDLLASKSMDNANEVAGIGRETVRGEFVKENGHLNLCGTENAGSEPVHF 1807
+ID G E +N E GR+ V + H+N NA +
Sbjct: 1699 DIDTSGLEE-----------ENKEE----GRQDVAVD------HVN-----NAVAR---- 1728
Query: 1808 TSQNQSLRRNVEREIEGEKTFSILVRGRRNRKQTLRIPISLLSRPYGSQSFKVIYNRVIR 1867
S+ ++ R E +GEKTFSIL+RGRRNRKQTLR+PISLL+RPY SQ FK+ Y+RVIR
Sbjct: 1729 -SEMENGNRKSE---DGEKTFSILLRGRRNRKQTLRMPISLLNRPYDSQPFKLGYSRVIR 1784
Query: 1868 GSEAPKSFS 1876
SEAPKS +
Sbjct: 1785 DSEAPKSVA 1793
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1888 | ||||||
| TAIR|locus:2035327 | 1797 | AT1G01320 [Arabidopsis thalian | 0.813 | 0.854 | 0.609 | 0.0 | |
| TAIR|locus:2037783 | 1608 | AT1G15290 [Arabidopsis thalian | 0.351 | 0.412 | 0.583 | 0.0 | |
| DICTYBASE|DDB_G0292806 | 1320 | cluA "CluA protein" [Dictyoste | 0.321 | 0.459 | 0.261 | 5e-55 | |
| UNIPROTKB|B4P6P7 | 1451 | clu "Protein clueless" [Drosop | 0.219 | 0.286 | 0.264 | 2.8e-46 | |
| UNIPROTKB|B4JW99 | 1494 | clu "Protein clueless" [Drosop | 0.197 | 0.248 | 0.268 | 3.9e-46 | |
| UNIPROTKB|B4MY63 | 1441 | clu "Protein clueless" [Drosop | 0.176 | 0.231 | 0.286 | 2.2e-45 | |
| UNIPROTKB|B4KT50 | 1487 | clu "Protein clueless" [Drosop | 0.196 | 0.249 | 0.274 | 4.3e-45 | |
| UNIPROTKB|B3MIW0 | 1450 | clu "Protein clueless" [Drosop | 0.211 | 0.275 | 0.258 | 6e-45 | |
| UNIPROTKB|B3NPV8 | 1452 | clu "Protein clueless" [Drosop | 0.219 | 0.285 | 0.264 | 1.8e-44 | |
| FB|FBgn0034087 | 1448 | clu "clueless" [Drosophila mel | 0.176 | 0.230 | 0.275 | 2.2e-44 |
| TAIR|locus:2035327 AT1G01320 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4676 (1651.1 bits), Expect = 0., Sum P(3) = 0.
Identities = 988/1621 (60%), Positives = 1179/1621 (72%)
Query: 1 MAPRNSRGXXXXXXXXXXXXVLPVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTE 60
MAP+N+RG VLPV++D+ VNLPD+T ILKGISTDRIIDVRRLLSVN +
Sbjct: 1 MAPKNNRGKTKGDKKKKEEKVLPVIVDVIVNLPDETEAILKGISTDRIIDVRRLLSVNFD 60
Query: 61 TCSITNFSLSHEIRGPRLKDAVDVAALKPCVLSLTEEDFDEEGAAAHVRRVLDIVACTTS 120
TC +TN+SLSHEIRG RLKD VDV+ALKPCVL+LTEED++E A AHVRR+LDIVACTT
Sbjct: 61 TCHVTNYSLSHEIRGSRLKDTVDVSALKPCVLTLTEEDYNEGTAVAHVRRLLDIVACTTC 120
Query: 121 FGPCGFDAGKNVPDSKSAK-KTTAKNEKDXXXXXXXXXXXXXXXXXXDVTVDGDGEMSHA 179
FGP + +V KSA+ K KN K D VD GE SH+
Sbjct: 121 FGPSP-EKSDSV---KSAQVKGGGKNSKQSDTSPPPSPASK------DTVVDEAGETSHS 170
Query: 180 FPKLSSFYEFFSLSHLTPPLQFIRKAPKRRVEEISPDDHLLSLDVKLCNGKMVNVEACRK 239
FPKL SFYEFFSL+HLTPPLQ+IR A KR E+I+ +DHLLS+DVKLCNGK+V++E CRK
Sbjct: 171 FPKLGSFYEFFSLAHLTPPLQYIRLATKRETEDIAKEDHLLSIDVKLCNGKLVHIEGCRK 230
Query: 240 GFYSVGKQRILCHNIVDLLGQLSRAFDNAYNELMNAFSERNKFGNLPYGFRANTWLIPPI 299
GFYS+GKQRI+CHN+VDLL Q+SRAFDNAY++L+ AFSERNKFGNLPYGFRANTWLIPP
Sbjct: 231 GFYSIGKQRIICHNLVDLLRQISRAFDNAYSDLLKAFSERNKFGNLPYGFRANTWLIPPT 290
Query: 300 AAQSPSVFPPLPAEDEAWXXXXXXXXXXXKSDLIPWANEFLFVASMPCKTAEERQIRDRK 359
AAQSP+ FPPLP EDE W DL+PW+NEF F+ASMPCKTAEERQ+RDRK
Sbjct: 291 AAQSPAAFPPLPVEDERWGGDGGGQGRDGSYDLVPWSNEFAFIASMPCKTAEERQVRDRK 350
Query: 360 AFLLHNLFVDVAIFRAIKAVHHVMGKPELIYPSNCKILYTEIIGGLRIAIMKDASNACCK 419
FLLHNLFVDVA FRAIKAV VM +P L + ++LY+E + L + + +D SNA K
Sbjct: 351 VFLLHNLFVDVATFRAIKAVQKVMAEPVLA-EEDSEVLYSETVRDLTVTVTRDTSNASSK 409
Query: 420 VDTKIDGSQATGVDKNNLVERNLLKGITADENTAAHDVATLGVVNVRYCGYIAVVKVQER 479
VDTKIDG QATG+DK L+ERNLLKG+TADENTAAHDVATLG ++++YCGYIAVVK+ E+
Sbjct: 410 VDTKIDGIQATGLDKKKLMERNLLKGLTADENTAAHDVATLGTISLKYCGYIAVVKL-EK 468
Query: 480 ENKKVGPLFQSIEL-EQPEGGANALNINSLRLLIHETTTLEDNKPAPNLQNLEREELNAS 538
E++++ P Q ++L EQPEGGANALNINSLR L+H+++ E NK P + +EL +S
Sbjct: 469 ESEELSPPSQIVDLLEQPEGGANALNINSLRFLLHKSSP-EQNKKTPQQHD---DELTSS 524
Query: 539 QMFVERLLEESIAKLEEEKPEREHFVRWELGACWIQHLQDQXXXXXXXXXXXXXXXXXXX 598
+ FV ++LEESIAKLE E+ +R+ +RWELGACWIQHLQDQ
Sbjct: 525 REFVSKMLEESIAKLEGEEIDRDSIMRWELGACWIQHLQDQKNTEKDKKQTGEKSKNE-- 582
Query: 599 XXXXXXMKVEGLGTPLKSLKNNRKKSEGSNHKIHSETLKSQADGVNGESEKATSASIEAR 658
+KVEGLG PLKSL +++KK++ S+ K L SQ D V+ E++ T+AS+++
Sbjct: 583 ------LKVEGLGKPLKSLNSSKKKTDVSSPKTPQTALSSQVDAVSSEAD--TAASLQSD 634
Query: 659 LESRDKENELALKNLLSDEAFARLKESETGLHCKSLEELIDLSHNYYVEVALPKLVTDFG 718
E +EN L LKNLLSD AF RLKES+TGLH KSL+EL+DL+ NYY EVA+PKLV DFG
Sbjct: 635 AEKNAQENVLILKNLLSDAAFTRLKESDTGLHHKSLQELVDLAQNYYTEVAIPKLVADFG 694
Query: 719 SLELSPVDGRTLTDFMHTRGLQMRSLGHVVKLSEKLSHVQSLCIHEMIVRAFKHIIQAVI 778
SLELSPVDGRTLTDFMHTRGL+MRSLG+VVKLS+KLSHVQSLC+HEMIVRA KHI+QAVI
Sbjct: 695 SLELSPVDGRTLTDFMHTRGLRMRSLGYVVKLSDKLSHVQSLCVHEMIVRALKHILQAVI 754
Query: 779 SAVG-NTQRMAVSIAAALNLMLGVHESDGLNKSH--NVHPLVWRWLELFLMKRYEWDLNG 835
SAV +T ++A+ +AAALN+MLG+ E+ + NVHPL++RWLE FL KRY++DLN
Sbjct: 755 SAVATDTDKIAIKVAAALNMMLGIPENVAATPHNPWNVHPLIFRWLEKFLKKRYDYDLNA 814
Query: 836 LNFKDVRKFAILRGLCHKVGIELVSRDFDMDSPSPFRKIDVVSLVPVHK--------QAA 887
++KD+RKFAILRGLCHKVGIEL+ RDFDMDSP+PFRK DVVSLVPVHK QAA
Sbjct: 815 FSYKDLRKFAILRGLCHKVGIELIPRDFDMDSPAPFRKTDVVSLVPVHKTFYFKSMQQAA 874
Query: 888 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH 947
CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH
Sbjct: 875 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH 934
Query: 948 TGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 1007
TGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL
Sbjct: 935 TGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 994
Query: 1008 HLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAI 1067
HLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAI
Sbjct: 995 HLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAI 1054
Query: 1068 AIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGT 1127
AIALSLMEAY LSVQHEQTTL+ILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGT
Sbjct: 1055 AIALSLMEAYHLSVQHEQTTLRILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGT 1114
Query: 1128 RKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDN---NLTS 1184
KPDASIASKGHLSVSDLLDYINPSH+ KG+ KRK Y+ K+K Q N +L
Sbjct: 1115 PKPDASIASKGHLSVSDLLDYINPSHNAKGKESVAAKRKNYILKLKEKSKQSNVSEHLVE 1174
Query: 1185 -PDGSSKEVLRESSDEETHAPEPESDTDVNQGSSIPFQQQEL--VVEESAVEKPN-ITE- 1239
P KE+ E + EET + E +S + ++ P ++ V+E++ ++ N IT
Sbjct: 1175 IPREKQKEMSEEDT-EETGSEEGKSSEENHETILAPVEEPPSPPVIEDATMDNSNPITSS 1233
Query: 1240 EISSAI-HEEG-DDGWQPVQRLRSAGSYGRRLKQRRATIGKVHSYQKRNADAVIDY-XXX 1296
++S+ H +G +DGWQPVQR RSAGSYGRR+KQRRA+IGKV++YQK+N +A ID
Sbjct: 1234 DVSTEPQHPDGSEDGWQPVQRPRSAGSYGRRMKQRRASIGKVYTYQKKNVEADIDNPLFQ 1293
Query: 1297 XXXXXXXRYYLLKKRAVSHGSSADHH-PVTTFHGTKFGXXXXXXXXXXXXS-MPSS--AK 1352
+YY+LKKR S+ S ADHH P T GTKFG S PSS AK
Sbjct: 1294 NATQQNDKYYILKKRTASYSSYADHHSPGLTTQGTKFGRKIVKTLAYRVKSTQPSSGNAK 1353
Query: 1353 TGTVEASINGXXXXXXXXX--XXXXXXXNDTSSVKNSIISLGKSPSYKEVAVAPPGTIAM 1410
T + +G ++ KNS++SLGKSPSYKEVA+APPG+IA
Sbjct: 1354 TAGETSEEDGLKTDASSVEPPTLSSTVQSEAYHTKNSVVSLGKSPSYKEVALAPPGSIAK 1413
Query: 1411 LQVRVPQSDNPDNQEFSFGKPEDGTMEEKENVNTNVTGAEKTNEEKSDSVLDATDNLKEE 1470
QV VPQ++ D QE D ME+K T++ E T +E+ + L+ + +K+E
Sbjct: 1414 YQVWVPQAEVSDKQE-------DDEMEKKTEQGTSM---ELTRDEQMITGLE--EEVKKE 1461
Query: 1471 TGVHPNREETHISDGLEDNPXXXXXXXXXXXXXXXDIHKVVQDGILINGIPNSIDSPTSE 1530
P E++I+ G E+ I++ + G GI + E
Sbjct: 1462 ISADP---ESNITQGEEE--IKVELQPSEGVLGGSHINENDESG---GGIQVE-EQVEVE 1512
Query: 1531 FYEKDSSESIESHDNTKSTLQVV---DDLKEKPSVF--NPGD-TRGL-PNRKLSASAVPF 1583
++ I S + Q+ +DLK K S+ + GD +RGL PN+KLSASA PF
Sbjct: 1513 LINDGVTDMIHSTREQQVIDQLAADSEDLKAKLSISTTDSGDASRGLLPNKKLSASAAPF 1572
Query: 1584 N 1584
N
Sbjct: 1573 N 1573
|
|
| TAIR|locus:2037783 AT1G15290 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1924 (682.3 bits), Expect = 0., Sum P(6) = 0.
Identities = 404/692 (58%), Positives = 498/692 (71%)
Query: 605 MKVEGLGTPLKSLKNNRKKSEGSNHKIHSETLKSQADGVNGESEKATSASIEARLESRDK 664
+ V+GLG K LK+ KKSE + +T + + E + SI+
Sbjct: 572 LSVKGLGKQFKDLKSKSKKSENISAVNEKDTRLHELN----EEDDLGQKSIDGLFTE--- 624
Query: 665 ENELALKNLLSDEAFARLKESETGLHCKSLEELIDLSHNYYVEVALPKLVTDFGSLELSP 724
LK LLS+EAF+RLKE+ TGLH KS EEL ++++ YY E+ALP+LV DFGSLELSP
Sbjct: 625 -----LKELLSEEAFSRLKETGTGLHLKSKEELTNMAYGYYDEIALPRLVADFGSLELSP 679
Query: 725 VDGRTLTDFMHTRGLQMRSLGHVVKLSEKLSHVQSLCIHEMIVRAFKHIIQAVISAVGNT 784
VDGRTLTDFMH RGLQMRSLGHV KL+EKL H+QSLCIHEMI RAFKH+++AVI++V N
Sbjct: 680 VDGRTLTDFMHIRGLQMRSLGHVAKLAEKLPHIQSLCIHEMITRAFKHLLRAVIASVNNM 739
Query: 785 QRMAVSIAAALNLMLGVHESDGLNK-SHNVHPLVWRWLELFLMKRYEWDLNGLNFKDVRK 843
+ V++AA+LN MLG E +G ++ + L +WL+ FL +++ W + F ++K
Sbjct: 740 AELPVAVAASLNFMLGRRELEGCDRIPGEEYCLRLQWLQKFLSRKFGW-IQKDEFHHLKK 798
Query: 844 FAILRGLCHKVGIELVSRDFDMDSPSPFRKIDVVSLVPVHKQAACSSADGRQLLESSKTA 903
F+ILRGLC KVG+ELVSRDFD DSP+PF D++ LVPV K C S+DGR LLESSK A
Sbjct: 799 FSILRGLCQKVGLELVSRDFDFDSPNPFMSSDIIGLVPVCKHVLCISSDGRTLLESSKLA 858
Query: 904 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 963
LDKGKL+DAV+YGTKAL K++AVCGPYHR TA AYSLLAVVLYHTGDFNQATIYQQKALD
Sbjct: 859 LDKGKLDDAVSYGTKALVKMIAVCGPYHRNTACAYSLLAVVLYHTGDFNQATIYQQKALD 918
Query: 964 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYI 1023
INERELGLDHPDTMKSYGDL+VFYYRLQH ELALKYV RAL+LLH TCG SHPNTAATYI
Sbjct: 919 INERELGLDHPDTMKSYGDLSVFYYRLQHFELALKYVNRALFLLHFTCGLSHPNTAATYI 978
Query: 1024 NVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQH 1083
NVAMME+ +GN H+ALRYLH+ALK N+RLLG DHIQTAASYHAIA+ALS MEA+ LSVQH
Sbjct: 979 NVAMMEKEVGNDHLALRYLHEALKSNKRLLGADHIQTAASYHAIAVALSFMEAHSLSVQH 1038
Query: 1084 EQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVS 1143
EQTTLQIL AKLG DDLRTQDAAAWLEYFES+A EQQEA RNG KPDASIASKGHLSVS
Sbjct: 1039 EQTTLQILTAKLGADDLRTQDAAAWLEYFESRAIEQQEAGRNGIPKPDASIASKGHLSVS 1098
Query: 1144 DLLDYINPSHDTKGRNVSTLK-RKTYVAKVKGNFYQDNNLTSPDGSSKEVLRESSDEETH 1202
DLLDYI+ DTKG NV+ K R+ + +V ++ S +++ ++ E
Sbjct: 1099 DLLDYISSDPDTKG-NVAHRKHRRARILQVNDKVASADDDAHRVASQIDIVTWNNVAE-- 1155
Query: 1203 APEPESDTDVNQGSSIPFQQQELVVEESAVEKPNITEEISSAIHEEG-DDGWQPV-QRLR 1260
A +S ++VN ++ + + + V + N+ + + E D+GWQ + R
Sbjct: 1156 ADVTKSRSEVNDPDTV-VDKTNIETGDIVVHRLNVDRQ---TVEESTLDEGWQEAYSKGR 1211
Query: 1261 SAGSYGRRLKQRRATIGK----VHSYQKRNAD 1288
S GR+ +QR+ + K ++ + RN D
Sbjct: 1212 SGNGAGRKSRQRQPDLMKKRMLLNKHHNRNQD 1243
|
|
| DICTYBASE|DDB_G0292806 cluA "CluA protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 537 (194.1 bits), Expect = 5.0e-55, Sum P(4) = 5.0e-55
Identities = 170/649 (26%), Positives = 302/649 (46%)
Query: 620 NRKKSEGSNHKIHSETLKSQADGVNGESEKATSASIEARLESRDKENELALK-NLLSDEA 678
N+K+ + K+ + + + +G++ + A ++ E + ++ NL S
Sbjct: 676 NQKRQQ----KLKEKEERQKKEGIDPPTATARDEDVQLTEEDLAQSPVVSFNPNLFSKVK 731
Query: 679 FARLKESETGLHCKSLEELIDLSHNYYVEVALPKLVTDFGSLELSPVDGRTLTDFMHTRG 738
E + K +E+L + + + +P+L+ D ++PVDG+TLT MH RG
Sbjct: 732 LGGTPEEQQ----KDIEDLKAIGA-FLKGILIPRLIEDLMLFNVAPVDGQTLTQVMHVRG 786
Query: 739 LQMRSLGHVVKL-SEKLSHVQSLCIHEMIVRAFKHIIQAVISAVGNTQRMAVSIAAALNL 797
+ MR LG++ K S + +Q L +EM+ RA KH ++ + N MA SI+ LN
Sbjct: 787 INMRYLGYIAKNESANVPFIQDLLFNEMVSRAAKHCFNRLLRST-NASDMAHSISHFLNC 845
Query: 798 MLGVH----ESDGLNK------SHNVHPL----VWRWLELFLMKRYEWDLNGLNFKDVRK 843
LG +D +K S ++ L +W + + ++++++ + +
Sbjct: 846 FLGTETGSVSADEKSKKAKQIKSSAINELTQGKLWSEIAQLVSSKFDFEIPTHSVPMESR 905
Query: 844 FAILRGLCHKVGIELVSRDFDMDSPSPFRKIDVVSLVPVHKQAACSSADGRQLLESSKTA 903
+LR +C K+GI+++++D++ + +PF D+V L P+ K S DG LLE+ KT
Sbjct: 906 LIVLRCICLKMGIQILAKDYNFTTDAPFSPEDIVDLFPIVKHVNPRSTDGLDLLEAGKTF 965
Query: 904 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 963
++ K E A +ALA V GP H ++ LA++ Y ++ A YQ+ AL
Sbjct: 966 FNQRKYELATELLGEALAIYHQVHGPIHPDAGACFTHLAMLAYQNEQYDLAIEYQKNALV 1025
Query: 964 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYI 1023
I E+ GLDH +T+++Y LAVF R ++ Y+K LYL L G +P A+ Y
Sbjct: 1026 ITEKTAGLDHHETVQAYTTLAVFCQRSGRYNESIGYMKHVLYLTDLLGGEYNPERASIYT 1085
Query: 1024 NVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQH 1083
+A + E +AL +L + LK + L PDH+ + +YH +AI + + S+ H
Sbjct: 1086 AIAAILEDTERFDLALEFLKQTLKHQEFLFTPDHLMCSTTYHKMAIVCARATNFDDSIIH 1145
Query: 1084 EQTTLQILRAKLGPDDLRTQDA----------AAWLEYFES-KAF--EQQEAARNGTRKP 1130
++ + IL +LG RT+++ A ++ F+ +A EQ E AR K
Sbjct: 1146 QKKSTDILEKELGEAHPRTKESLEFYTGLSQTANQIKLFKQHQALKAEQDELARLQKEKA 1205
Query: 1131 DASIASKGHLS-VSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDNNLTSPDGSS 1189
D S+ +S + L+ + S N K ++ +K N T+ S
Sbjct: 1206 DQFKKSQPRVSAMPPSLENGSVSELLNYINGKPKKSQSKKSKSTNTTTTTNTTTATTSKS 1265
Query: 1190 KEVLRESSDEETHAPEPESDTDVNQGSSIPFQQQELVVEESAVE--KPN 1236
K + ++ + T A +S + ++ + SA + KPN
Sbjct: 1266 KITMAKTPNPTTKATTSKSSATASSAATNKSTTKTNPTSSSAADSSKPN 1314
|
|
| UNIPROTKB|B4P6P7 clu "Protein clueless" [Drosophila yakuba (taxid:7245)] | Back alignment and assigned GO terms |
|---|
Score = 362 (132.5 bits), Expect = 2.8e-46, Sum P(4) = 2.8e-46
Identities = 117/442 (26%), Positives = 201/442 (45%)
Query: 817 VWRWLELFLMKRYEWDLNGLNFKD-VRKFAILR-----GLCHKVGIELVSRDFDMDSP-S 869
+W+ + ++W+L+ + + V K+ ILR C KVGI+++ R+++ +S
Sbjct: 1022 LWQQIRKEAKVYWDWELDCDSIETAVSKYGILRISLLRAFCLKVGIQVLLREYNFESKHK 1081
Query: 870 P-FRKIDVVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCG 928
P F DVV++ PV K + + D + + + +G ++ + AL L V G
Sbjct: 1082 PTFGDDDVVNVFPVVKHISPRATDAYNFYTTGQAKIQQGMFKEGYELISGALNLLNNVFG 1141
Query: 929 PYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYY 988
H+ +LA + Y GD A QQ+A+ ++ER G+DHP T+ Y L+++ +
Sbjct: 1142 ALHQENGSCLRMLARLSYLLGDAQDALAIQQRAVIMSERVNGMDHPSTILEYTHLSLYSF 1201
Query: 989 RLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048
H ++LK + RA YL+ L CG HP A N++++ LG ++LR++ ALK
Sbjct: 1202 ANGHVGMSLKLLYRARYLMVLICGEDHPEVALIDSNISLILHALGEYELSLRFIEHALKL 1261
Query: 1049 NQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAW 1108
N + G + A SYH +A S M + ++ +E+ T +++LG + +T+D+A
Sbjct: 1262 NLKYFGDKAMPVALSYHLMARTQSCMGDFRSALNNEKETYSFYKSQLGENHEKTRDSAEC 1321
Query: 1109 LEYFESKAFEQQEAARN--GTRK-----PDASIASKGHLSVSDLLDYINPSHDTKGRNVS 1161
L +A Q + + K P I SV D+L+ IN G
Sbjct: 1322 LRLLTQQAVLLQRKMNDIYSSGKLTSDLPPIHITPPSMGSVLDMLNTIN------GILFV 1375
Query: 1162 TLKRKTYVAKVKGNFYQDNNLTSPDGSSKEVLRESSDEETHAPEPESDTDVNQGSSIPFQ 1221
+ RK V KV+ + SP+ + + + E E D D +
Sbjct: 1376 KISRKDIV-KVRSEIEKHFKADSPENEVNDAINSIVAAANNNGEAE-DADPKDVK----E 1429
Query: 1222 QQELVVEESAVEKPNITEEISS 1243
Q + + + EK TE SS
Sbjct: 1430 QAQAGTQLTNGEKAAATEATSS 1451
|
|
| UNIPROTKB|B4JW99 clu "Protein clueless" [Drosophila grimshawi (taxid:7222)] | Back alignment and assigned GO terms |
|---|
Score = 370 (135.3 bits), Expect = 3.9e-46, Sum P(4) = 3.9e-46
Identities = 104/387 (26%), Positives = 192/387 (49%)
Query: 843 KFAILRGLCHKVGIELVSRDFDMDSP-SP-FRKIDVVSLVPVHKQAACSSADGRQLLESS 900
+ ++LR C KVGI+++ R+++ +S P F D+V++ PV K + + D +
Sbjct: 1086 RISLLRAFCLKVGIQVLLREYNFESKHKPTFGDDDIVNVFPVVKHISPRATDAYNFYTTG 1145
Query: 901 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQK 960
+ + +G L++ ++AL L V G H+ +LA + Y GD A QQ+
Sbjct: 1146 QAKIQQGLLKEGYELISEALNLLNNVFGAMHQENGSCLRMLARLSYLLGDAGDALAIQQR 1205
Query: 961 ALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAA 1020
A+ ++ER G+DHP T+ Y L+++ + H ++LK + RA YLL L CG HP A
Sbjct: 1206 AVIMSERVNGIDHPSTILEYTHLSLYSFANGHVGMSLKLLYRARYLLVLICGEDHPEVAL 1265
Query: 1021 TYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLS 1080
N++++ LG ++LR++ ALK N++ G + A SYH +A S M + +
Sbjct: 1266 IDSNISLILHALGEYELSLRFIEHALKLNRKYFGDKAMHVAVSYHLMARTQSCMGDFRSA 1325
Query: 1081 VQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF--ESKAFEQQ--EAARNG---TRKPDAS 1133
+ +E+ T I ++++G +T+++A L E+ A +++ + NG + P
Sbjct: 1326 LSNEKETYSIYKSQMGEKHEKTRESAECLRLLTHEAVALQRKMNDIYSNGKLTSDLPPIH 1385
Query: 1134 IASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK-VKGNFYQDNNLTSPDGSSKEV 1192
I SV ++L+ IN +K ++ + K +K N +N +T + K +
Sbjct: 1386 ITPPSMGSVLEMLNTINGILFVHISQKDIVKVRSEIEKHLKTNT-DENEITD---ALKTI 1441
Query: 1193 LRESSDEETHAPEPESDTDVNQGSSIP 1219
+ +++ E +A E D + P
Sbjct: 1442 VAAANNNE-NATETTKDEGAAAAGAAP 1467
|
|
| UNIPROTKB|B4MY63 clu "Protein clueless" [Drosophila willistoni (taxid:7260)] | Back alignment and assigned GO terms |
|---|
Score = 390 (142.3 bits), Expect = 2.2e-45, Sum P(4) = 2.2e-45
Identities = 100/349 (28%), Positives = 173/349 (49%)
Query: 817 VWRWLELFLMKRYEWDLN------GLNFKDVRKFAILRGLCHKVGIELVSRDFDMDSP-S 869
+W+ + ++WDL L + + ++LRG C KVGI+++ R+++ +S
Sbjct: 1025 LWQQIRKEAKAYWDWDLECDAIDIALTKYGISRISLLRGFCQKVGIQVLLREYNFESKHK 1084
Query: 870 P-FRKIDVVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCG 928
P F D+V++ PV K + S D + ++ + +G ++ ++AL L V G
Sbjct: 1085 PTFGDDDIVNVFPVVKHISPRSTDAYNFYTTGQSKIQQGLFKEGYELISEALNLLNNVFG 1144
Query: 929 PYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYY 988
H+ +LA + Y GD A QQ+A+ ++ER G+DHP T+ Y L+++ +
Sbjct: 1145 AMHQENGSCLRMLARLSYLLGDAQDALAIQQRAVIMSERVNGIDHPSTILEYTHLSLYSF 1204
Query: 989 RLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048
H ++LK + RA YLL L CG HP A N++++ LG ++LR++ ALK
Sbjct: 1205 ANGHVGMSLKLLYRARYLLVLICGEDHPEVALIDSNISLILHALGEYELSLRFIEHALKL 1264
Query: 1049 NQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAW 1108
N + G + A SYH +A S M + ++ +E+ T I +++LG +T+D+A
Sbjct: 1265 NLKYFGAKAMHVAVSYHLMARTQSCMGDFRSALNNEKETYTIYKSQLGEKHEKTRDSAEC 1324
Query: 1109 LEYFESKAF----EQQEAARNG---TRKPDASIASKGHLSVSDLLDYIN 1150
L +A + + NG + P I SV D+L+ IN
Sbjct: 1325 LRLLTQQAVLLQRKMNDIYSNGKLTSDLPPIHITPPSMGSVLDMLNTIN 1373
|
|
| UNIPROTKB|B4KT50 clu "Protein clueless" [Drosophila mojavensis (taxid:7230)] | Back alignment and assigned GO terms |
|---|
Score = 368 (134.6 bits), Expect = 4.3e-45, Sum P(4) = 4.3e-45
Identities = 108/393 (27%), Positives = 194/393 (49%)
Query: 779 SAVGNTQRMAVSIAA--ALNLMLGVHESDGLNKSHN---VHPL-VWRWLELFLMKRYEWD 832
SA TQ S AA + N + G N +++ V P +W+ + + + W+
Sbjct: 1013 SAAAATQNGHSSTAANGSANSAANTASTSG-NSNYDWTLVTPRSLWQQIRKEIKSYWNWE 1071
Query: 833 LNGLNFKD------VRKFAILRGLCHKVGIELVSRDFDMDSP-SP-FRKIDVVSLVPVHK 884
L+ + + + + ++LR C KVGI+++ R+++ +S P F D+V++ PV K
Sbjct: 1072 LDCDSIESACAKYGLLRISLLRAFCLKVGIQVLLREYNFESKHKPTFGDDDIVNVFPVVK 1131
Query: 885 QAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVV 944
+ + D + + + +G L++ ++AL L V G H+ +LA +
Sbjct: 1132 HISPRATDAYNFYTTGQAKIQQGLLKEGYELISEALNLLNNVFGAMHQENGSCLRMLARL 1191
Query: 945 LYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRAL 1004
Y GD A QQ+A+ ++ER G+DHP T+ Y L+++ + H ++LK + RA
Sbjct: 1192 SYLLGDAQDALAIQQRAVIMSERVNGIDHPSTILEYTHLSLYSFANGHVGMSLKLLYRAR 1251
Query: 1005 YLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASY 1064
YLL L CG HP A N++++ LG ++LR++ ALK N + G + A SY
Sbjct: 1252 YLLVLVCGEDHPEVALIDSNISLILHALGEYELSLRFIEHALKLNLKYFGNKAMHVAVSY 1311
Query: 1065 HAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF--ESKAFEQQ-- 1120
H +A S M + ++ +E+ T I +++LG +T+++A L E+ A +++
Sbjct: 1312 HLMARIQSCMGDFRSALNNEKETYSIYKSQLGEKHDKTRESAECLRLLTHEAVALQRKMN 1371
Query: 1121 EAARNG---TRKPDASIASKGHLSVSDLLDYIN 1150
+ NG + P I SV ++L+ IN
Sbjct: 1372 DIYSNGKLTSDLPPIHITPPSMGSVLEMLNTIN 1404
|
|
| UNIPROTKB|B3MIW0 clu "Protein clueless" [Drosophila ananassae (taxid:7217)] | Back alignment and assigned GO terms |
|---|
Score = 369 (135.0 bits), Expect = 6.0e-45, Sum P(5) = 6.0e-45
Identities = 108/417 (25%), Positives = 194/417 (46%)
Query: 817 VWRWLELFLMKRYEWDLNGLNFKD-VRKFAILR-----GLCHKVGIELVSRDFDMDSP-S 869
+W+ + ++W+L+ + + V K+ ILR C KVGI+++ R+++ +S
Sbjct: 1018 LWQQIRREAKSYWDWELDCDSIETAVSKYGILRISLLRAFCLKVGIQVLLREYNFESKHK 1077
Query: 870 P-FRKIDVVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCG 928
P F D+V++ PV K + + D + + + +G ++ ++AL L V G
Sbjct: 1078 PTFGDEDIVNVFPVVKHISPRATDAYNFYTTGQAKIQQGMFKEGYELISEALNLLNNVFG 1137
Query: 929 PYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYY 988
H+ +LA + Y GD A QQ+A+ ++ER G+DHP T+ Y L+++ +
Sbjct: 1138 AMHQENGSCLRMLARLSYLLGDAQDALAIQQRAVIMSERVNGIDHPSTILEYTHLSLYSF 1197
Query: 989 RLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048
H ++LK + RA YL+ L CG HP A N++++ LG ++LR++ ALK
Sbjct: 1198 ANGHVGMSLKLLYRARYLMVLICGEDHPEVALIDSNISLILHALGEYELSLRFIEHALKL 1257
Query: 1049 NQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAW 1108
N + G + A SYH +A S M + ++ +E+ T I ++++G +T+D+A
Sbjct: 1258 NIKYFGSKAMHVAFSYHLMARTQSCMGDFRSALNNEKETYSIYKSQVGEKHEKTRDSAEC 1317
Query: 1109 LEYFESKAF----EQQEAARNG---TRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVS 1161
L +A + + NG + P I SV D+L+ IN +
Sbjct: 1318 LRLLTQQAVLLQRKMNDIYSNGKLTSDLPPIHITPPSMGSVLDMLNTINGILFVQISQKD 1377
Query: 1162 TLKRKTYVAK-VKGNFYQDNNLTSPDGSSKEVLRESSDEETHAPEPESDTDVNQGSS 1217
+K ++ + K K N +N + S + D E + D G+S
Sbjct: 1378 IVKVRSEIEKHFKANS-AENEVNDAIKSIVAAANNNGDTEAETKDATKDNKDLAGAS 1433
|
|
| UNIPROTKB|B3NPV8 clu "Protein clueless" [Drosophila erecta (taxid:7220)] | Back alignment and assigned GO terms |
|---|
Score = 360 (131.8 bits), Expect = 1.8e-44, Sum P(5) = 1.8e-44
Identities = 117/442 (26%), Positives = 204/442 (46%)
Query: 817 VWRWLELFLMKRYEWDLNGLNFKD-VRKFAILR-----GLCHKVGIELVSRDFDMDSP-S 869
+W+ + ++W+L+ + + V K+ ILR C KVGI+++ R+++ +S
Sbjct: 1023 LWQQIRKEAKVYWDWELDCDSIETAVSKYGILRISLLRAFCLKVGIQVLLREYNFESKHK 1082
Query: 870 P-FRKIDVVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCG 928
P F D+V++ PV K + + D + + + +G ++ + AL L V G
Sbjct: 1083 PTFGDDDIVNVFPVVKHISPRATDAYNFYTTGQAKIQQGMFKEGYELISGALNLLNNVFG 1142
Query: 929 PYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYY 988
H+ +LA + Y GD A QQ+A+ ++ER G+DHP T+ Y L+++ +
Sbjct: 1143 ALHQENGSCLRMLARLSYLLGDAQDALAIQQRAVIMSERVNGMDHPSTILEYTHLSLYSF 1202
Query: 989 RLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048
H ++LK + RA YL+ L CG HP A N++++ LG ++LR++ ALK
Sbjct: 1203 ANGHVGMSLKLLYRARYLMVLICGEDHPEVALIDSNISLILHALGEYELSLRFIEHALKL 1262
Query: 1049 NQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAW 1108
N + G + A SYH +A S M + ++ +E+ T +++LG + +T+D+A
Sbjct: 1263 NLKYFGDKAMPVALSYHLMARTQSCMGDFRSALNNEKETYSFYKSQLGENHEKTKDSAEC 1322
Query: 1109 LEYFESKAFEQQEAARN--GTRK-----PDASIASKGHLSVSDLLDYINPSHDTKGRNVS 1161
L +A Q + + K P I SV D+L+ IN G
Sbjct: 1323 LRLLTQQAVLLQRKMNDIYSSGKLTSDLPPIHITPPSMGSVLDMLNTIN------GILFV 1376
Query: 1162 TLKRKTYVAKVKGNFYQDNNLTSPDGSSKEVLRESSDEETHAPEPESDTDVNQGSSIPFQ 1221
+ RK V KV+ + SP+ + + SS E++ V + +
Sbjct: 1377 KISRKDIV-KVRSEIEKHFKADSPENEVNDAI--SSIVAAANNNGEAEDAVPKDVE---E 1430
Query: 1222 QQELVVEESAVEKPNITEEISS 1243
Q+E + + EK TE SS
Sbjct: 1431 QKEAGTQLTNGEKAAATEATSS 1452
|
|
| FB|FBgn0034087 clu "clueless" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 358 (131.1 bits), Expect = 2.2e-44, Sum P(5) = 2.2e-44
Identities = 96/349 (27%), Positives = 171/349 (48%)
Query: 817 VWRWLELFLMKRYEWDLNGLNFKD-VRKFAILR-----GLCHKVGIELVSRDFDMDSP-S 869
+W+ + ++W+L+ + + V K+ ILR C KVGI+++ R+++ +S
Sbjct: 1019 LWQQIRKEAKVYWDWELDCDSIETAVSKYGILRISLMRAFCLKVGIQVLLREYNFESKHK 1078
Query: 870 P-FRKIDVVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCG 928
P F D+V++ P+ K + + D + + + +G ++ + AL L V G
Sbjct: 1079 PTFGDDDIVNVFPIVKHISPRATDAYNFYTTGQAKIQQGLFKEGYELISGALNLLNNVFG 1138
Query: 929 PYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYY 988
H+ +LA + Y GD A QQ+A+ ++ER G+DHP T+ Y L+++ +
Sbjct: 1139 ALHQENGSCLRMLARLSYLLGDAQDALAIQQRAVIMSERVNGMDHPSTILEYTHLSLYSF 1198
Query: 989 RLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048
H ++LK + RA YL+ L CG HP A N++++ LG ++LR++ ALK
Sbjct: 1199 ANGHVGMSLKLLYRARYLMVLICGEDHPEVALIDSNISLILHALGEYELSLRFIEHALKL 1258
Query: 1049 NQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAW 1108
N + G + A SYH +A S M + ++ +E+ T +++LG + +T+D+A
Sbjct: 1259 NLKYFGDKDMHVALSYHLMARTQSCMGDFRSALNNEKETYSFYKSQLGENHEKTRDSAEC 1318
Query: 1109 LEYFESKAFEQQEAARN--GTRK-----PDASIASKGHLSVSDLLDYIN 1150
L +A Q + + K P I SV D+L+ IN
Sbjct: 1319 LRLLTQQAVLLQRKMNDIYSSGKLTSDLPPIHITPPSMGSVLDMLNTIN 1367
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1888 | |||
| pfam12807 | 169 | pfam12807, eIF3_p135, Translation initiation facto | 9e-44 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 2e-14 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 2e-12 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 2e-11 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 3e-10 | |
| pfam13374 | 42 | pfam13374, TPR_10, Tetratricopeptide repeat | 8e-08 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 1e-07 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-07 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 6e-07 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 1e-06 | |
| pfam13374 | 42 | pfam13374, TPR_10, Tetratricopeptide repeat | 2e-06 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 5e-06 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 7e-06 | |
| pfam13908 | 177 | pfam13908, Shisa, Wnt and FGF inhibitory regulator | 4e-05 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 3e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 4e-04 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 0.002 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 0.003 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 0.004 |
| >gnl|CDD|221783 pfam12807, eIF3_p135, Translation initiation factor eIF3 subunit 135 | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 9e-44
Identities = 56/170 (32%), Positives = 89/170 (52%), Gaps = 22/170 (12%)
Query: 718 GSLELSPVDGRTLTDFMHTRGLQMRSLGHVVKLSEK-LSHVQSLCIHEMIVRAFKHIIQA 776
SLELSP+DG++LT+ +H RG+ MR LG V KL+ K L H++ LC+ EMI RA KHI++
Sbjct: 1 ISLELSPMDGQSLTELLHRRGINMRYLGKVAKLASKRLPHLKRLCVSEMIARAAKHILRT 60
Query: 777 VISAVGNTQRMAVSIAAALNLMLGVH-ESDGLNKSHNVHPL----------------VWR 819
+ V ++ +I+ LN +LG D + +W
Sbjct: 61 YLRGV-PAPDLSAAISHFLNCLLGSESNPDPEAEIDESRSASYPEDDFAWEKLTPEELWS 119
Query: 820 WLELFLMKRYEWDLNGLNF---KDVRKFAILRGLCHKVGIELVSRDFDMD 866
+E R+ ++L ++K ++LR +C KVGI+L+ R++D D
Sbjct: 120 EIEKEAKDRFRYELKEDWKDEQYGLQKISLLREICLKVGIQLLLREYDFD 169
|
Translation initiation factor eIF3 is a multi-subunit protein complex required for initiation of protein biosynthesis in eukaryotic cells. The complex promotes ribosome dissociation, the binding of the initiator methionyl-tRNA to the 40 S ribosomal subunit, and mRNA recruitment to the ribosome. The protein product from TIF31 genes in yeast is p135 which associates with the eIF3 but does not seem to be necessary for protein translation initiation. Length = 169 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 2e-14
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 931 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRL 990
H A A + LA+VL GD+++A +KAL++ RELG DHP+T ++ +LA Y L
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALEL-ARELGEDHPETARALNNLARLYLAL 59
Query: 991 QHTELALKYVKRAL 1004
+ AL+Y+++AL
Sbjct: 60 GDYDEALEYLEKAL 73
|
Length = 78 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 2e-12
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL 1032
HPD + +LA+ RL + AL+ +++AL L G HP TA N+A + L
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELAREL-GEDHPETARALNNLARLYLAL 59
Query: 1033 GNVHVALRYLHKALKCNQR 1051
G+ AL YL KAL +
Sbjct: 60 GDYDEALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 2e-11
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 1015 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLM 1074
HP+ AA N+A++ LG+ AL L KAL+ R LG DH +TA + + +A +
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALE-LARELGEDHPETARALNNLARLYLAL 59
Query: 1075 EAYPLSVQHEQTTLQILRA 1093
Y ++++ + L + A
Sbjct: 60 GDYDEALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 3e-10
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 16/113 (14%)
Query: 937 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELA 996
A L + Y GD+++A Y +KAL+++ PD +Y +LA YY+L E A
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELD--------PDNADAYYNLAAAYYKLGKYEEA 53
Query: 997 LKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049
L+ ++AL L P+ A Y N+ + LG AL KAL+ +
Sbjct: 54 LEDYEKALELD--------PDNAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98
|
Length = 100 |
| >gnl|CDD|205553 pfam13374, TPR_10, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 8e-08
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 975
TA + + LA L G + +A ++AL I R LG DHPD
Sbjct: 1 TAASLNNLARALRAQGRYEEAEELLEEALAIRRRVLGPDHPD 42
|
Length = 42 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.9 bits (130), Expect = 1e-07
Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 20/151 (13%)
Query: 904 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 963
+ G E+A+ KAL P A A L +L G + ++AL+
Sbjct: 141 YELGDYEEALELYEKALEL-----DPELNELAEALLALGALLEALGRY-------EEALE 188
Query: 964 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYI 1023
+ E+ L L+ D ++ +L + Y +L E AL+Y ++AL L P+ A
Sbjct: 189 LLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--------DPDNAEALY 240
Query: 1024 NVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054
N+A++ LG AL L KAL+ + L
Sbjct: 241 NLALLLLELGRYEEALEALEKALELDPDLYN 271
|
Length = 291 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-07
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 16/109 (14%)
Query: 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQAT 955
LL G ++A+ Y KAL A AY LA Y G + +A
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKALE--------LDPDNADAYYNLAAAYYKLGKYEEAL 54
Query: 956 IYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRAL 1004
+KAL+++ PD K+Y +L + YY+L E AL+ ++AL
Sbjct: 55 EDYEKALELD--------PDNAKAYYNLGLAYYKLGKYEEALEAYEKAL 95
|
Length = 100 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 6e-07
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 904 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 963
G ++A+ KAL L G H TA A + LA + GD+++A Y +KAL
Sbjct: 16 RRLGDYDEALELLEKALE-LARELGEDHPETARALNNLARLYLALGDYDEALEYLEKALA 74
Query: 964 INER 967
+ E
Sbjct: 75 LREA 78
|
Length = 78 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.2 bits (123), Expect = 1e-06
Identities = 45/229 (19%), Positives = 80/229 (34%), Gaps = 27/229 (11%)
Query: 885 QAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVV 944
+ LL GK E+A+ KALA + GA
Sbjct: 87 ELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGAL------ 140
Query: 945 LYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRAL 1004
Y GD+ +A +KAL+++ L ++ L L E AL+ +++AL
Sbjct: 141 -YELGDYEEALELYEKALELDPELNELA-----EALLALGALLEALGRYEEALELLEKAL 194
Query: 1005 YLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASY 1064
L + A LG +++ L +AL+ ++ L D A +
Sbjct: 195 KLNPD--------------DDAEALLNLGLLYLKLGKYEEALEYYEKALELDP-DNAEAL 239
Query: 1065 HAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFE 1113
+ +A+ L + Y +++ + L++ A LE E
Sbjct: 240 YNLALLLLELGRYEEALEALEKALELDPDLYNLGLALLLLLAEALELLE 288
|
Length = 291 |
| >gnl|CDD|205553 pfam13374, TPR_10, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 2e-06
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 1018 TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ 1059
TAA+ N+A G A L +AL +R+LGPDH
Sbjct: 1 TAASLNNLARALRAQGRYEEAEELLEEALAIRRRVLGPDHPD 42
|
Length = 42 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.2 bits (118), Expect = 5e-06
Identities = 50/223 (22%), Positives = 76/223 (34%), Gaps = 20/223 (8%)
Query: 904 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 963
L G+LE+A+ KAL LA L + G +A ++AL+
Sbjct: 70 LKLGRLEEALELLEKALELE-------------LLPNLAEALLNLGLLLEALGKYEEALE 116
Query: 964 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYI 1023
+ E+ L LD + Y L E AL+ ++AL L P A +
Sbjct: 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALEL-----DPELNELAEALL 171
Query: 1024 NVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAY--PLSV 1081
+ + E LG AL L KALK N + Y + +E Y L +
Sbjct: 172 ALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL 231
Query: 1082 QHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAAR 1124
+ A L + R ++A LE +
Sbjct: 232 DPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLYNLGL 274
|
Length = 291 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 7e-06
Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 16/113 (14%)
Query: 978 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHV 1037
++ +L YY+L + AL+Y ++AL L P+ A Y N+A LG
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEE 52
Query: 1038 ALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090
AL KAL+ + PD+ + +Y+ + +A + Y +++ + L++
Sbjct: 53 ALEDYEKALELD-----PDNAK---AYYNLGLAYYKLGKYEEALEAYEKALEL 97
|
Length = 100 |
| >gnl|CDD|222449 pfam13908, Shisa, Wnt and FGF inhibitory regulator | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 4e-05
Identities = 22/75 (29%), Positives = 26/75 (34%), Gaps = 7/75 (9%)
Query: 1599 MTLPPGPGAVTAVAPWPVNMTLHPRPATVLPTVNPMCSSPHQPYPSPPSTPNM-MQPLPF 1657
P P A V T P+P + P+ +Q Y P P M P
Sbjct: 106 ACRPQRPVMTRAT-STTVQTTPLPQPPSTAPSYP---GPQYQGYHPMPPQPGMPAPPYSL 161
Query: 1658 MYPP--YTQPQGVPT 1670
YPP QPQG P
Sbjct: 162 QYPPPGLLQPQGPPP 176
|
Shisa is a transcription factor-type molecule that physically interacts with immature forms of the Wnt receptor Frizzled and the FGF receptor within the endoplasmic reticulum to inhibit their post-translational maturation and trafficking to the cell surface. Length = 177 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 3e-04
Identities = 36/159 (22%), Positives = 48/159 (30%), Gaps = 14/159 (8%)
Query: 1577 SASAVPFNPSPAVARASAVAINMTLP--PGPGAVT---AVAPWPVNMTLHPRPATVLPTV 1631
+A P +P VA T+ P PG T +AP P + A
Sbjct: 334 AAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQY 393
Query: 1632 NPMCSSPHQPYPSPPSTPNMMQPLPFMYPPYT-----QPQGVPTSTFPVTTSAFHH---- 1682
N P QP + Y P QP P PV +A+
Sbjct: 394 NEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQ 453
Query: 1683 NHFSWQCNGNSNVPEFIPGPFLPGYHPMEFSVPPPVVEP 1721
+ F+ Q + P P Y + PVVEP
Sbjct: 454 STFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEP 492
|
Length = 1355 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 4e-04
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 9/71 (12%)
Query: 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRL-QHT 993
A A L L+ GD+++A +KAL+++ PD ++Y +LA+ Y +L +
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELD--------PDNAEAYYNLALAYLKLGKDY 54
Query: 994 ELALKYVKRAL 1004
E AL+ +++AL
Sbjct: 55 EEALEDLEKAL 65
|
Length = 69 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.002
Identities = 37/182 (20%), Positives = 65/182 (35%), Gaps = 35/182 (19%)
Query: 866 DSPSPFRKIDVVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVA 925
D P R D + Q A LE + K L+ A+ +
Sbjct: 17 DVPRSSRTTDRNKAAKIRVQLAL------GYLEQGDLEVAKENLDKALEHDPD------- 63
Query: 926 VCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 985
AY LA+ G+ +A ++AL +N ++ D + +YG
Sbjct: 64 --------DYLAYLALALYYQQLGELEKAEDSFRRALTLNP-----NNGDVLNNYG---T 107
Query: 986 FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKA 1045
F + E A++ ++A+ P +P A + N + G+ A +YL +A
Sbjct: 108 FLCQQGKYEQAMQQFEQAIED------PLYPQPARSLENAGLCALKAGDFDKAEKYLTRA 161
Query: 1046 LK 1047
L+
Sbjct: 162 LQ 163
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.003
Identities = 34/159 (21%), Positives = 59/159 (37%), Gaps = 17/159 (10%)
Query: 531 EREELNASQMFVERLLEESIAKLEEEKPEREHFVRWELGACWIQ--HLQDQKNAEKDKKL 588
E +E + E L+ + EE K E R ++ ++ K EK+ K
Sbjct: 274 ENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKK 333
Query: 589 SKEKAKKLSNEKAKSEMKVEGLGTPLKSLKNNRKKSEGSNHKIHSETLKSQADGVNGESE 648
KE+ ++L E + E +K ++ + + E L+ +
Sbjct: 334 EKEEIEELEKELKELE---------IKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLES 384
Query: 649 KATSASIEARLESRDKENELALKNLLSDEAFARLKESET 687
+ S++ + KE EL LKN EA L+ SE
Sbjct: 385 ERLSSAA------KLKEEELELKNEEEKEAKLLLELSEQ 417
|
This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.004
Identities = 29/112 (25%), Positives = 36/112 (32%), Gaps = 4/112 (3%)
Query: 1560 PSVFNPGDTRGLPNRKLSASAVPFNPSPAVARASAVAINMTLPPGPGAVTAVA----PWP 1615
P+V T G P R P+PA A A L A + + P P
Sbjct: 2742 PAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSP 2801
Query: 1616 VNMTLHPRPATVLPTVNPMCSSPHQPYPSPPSTPNMMQPLPFMYPPYTQPQG 1667
+ P P +SP P P P S P P PP + P G
Sbjct: 2802 WDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLG 2853
|
Length = 3151 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1888 | |||
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 100.0 | |
| PF13236 | 221 | CLU: Clustered mitochondria | 100.0 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 100.0 | |
| PF12807 | 169 | eIF3_p135: Translation initiation factor eIF3 subu | 99.97 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.93 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.87 | |
| PF15044 | 76 | CLU_N: Mitochondrial function, CLU-N-term | 99.85 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.82 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.78 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.66 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.58 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.57 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.54 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.49 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.43 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.41 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.41 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.39 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.36 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.34 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.33 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.32 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.31 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.31 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.31 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.28 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.28 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.27 | |
| PF05303 | 108 | DUF727: Protein of unknown function (DUF727); Inte | 99.27 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.26 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.24 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.24 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.24 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.24 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.24 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.22 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.21 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.19 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.19 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.18 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.18 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.16 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.15 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.09 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.07 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.04 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.04 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.03 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.02 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.99 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.99 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.99 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 98.99 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.95 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.95 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.94 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.94 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.94 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.94 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 98.93 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.91 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.88 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.84 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.84 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.79 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.78 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.78 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.77 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.77 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 98.74 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 98.73 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.72 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.72 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 98.72 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.71 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 98.68 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.67 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.64 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.63 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.63 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.62 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.62 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.61 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.58 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.57 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.55 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.55 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.54 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.53 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.53 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.51 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.5 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.49 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.48 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.47 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.46 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 98.45 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.44 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.43 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.43 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 98.4 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 98.4 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.39 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.39 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.38 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.38 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.35 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.34 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.32 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.31 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 98.29 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 98.27 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.26 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 98.26 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.25 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.24 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 98.22 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.21 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.19 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.18 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.17 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.15 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.15 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.13 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.12 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.11 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.09 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.09 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.09 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.08 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 98.08 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.03 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.03 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.01 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 98.01 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 97.97 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.96 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.96 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 97.95 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 97.93 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.9 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.9 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.88 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 97.87 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 97.87 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.86 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.86 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.85 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.84 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.82 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.81 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.8 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 97.8 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 97.8 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.79 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.77 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.7 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 97.65 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.65 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.61 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.6 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 97.59 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.59 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.54 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.51 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 97.49 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.48 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 97.48 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.47 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 97.47 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.45 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.41 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 97.41 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 97.4 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.39 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.38 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.37 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.35 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 97.34 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 97.34 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.33 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.25 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.23 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 97.22 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 97.22 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 97.2 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 97.19 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.18 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.18 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.18 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.16 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 97.11 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.07 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.03 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 97.03 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.03 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 97.0 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 97.0 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.93 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 96.92 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 96.89 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 96.89 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 96.81 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 96.8 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 96.8 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 96.79 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.74 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.72 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.71 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.71 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 96.69 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 96.62 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.61 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 96.59 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.58 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.58 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.56 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 96.55 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 96.52 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 96.37 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.32 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.16 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 96.15 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.15 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.09 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.07 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.97 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.97 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 95.96 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.84 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.77 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 95.77 | |
| KOG3965 | 160 | consensus Uncharacterized conserved protein [Funct | 95.74 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 95.72 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.71 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 95.69 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 95.68 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 95.64 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.6 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 95.59 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.58 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.47 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 95.38 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 95.37 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.21 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 95.09 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.05 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.0 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 94.98 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 94.87 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 94.7 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.58 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 94.51 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 94.5 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 94.34 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 94.19 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 94.17 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 94.13 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 93.87 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.81 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.78 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.67 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 93.59 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.55 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 93.53 | |
| PF12739 | 414 | TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex | 93.48 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.27 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 93.26 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.24 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 93.22 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.11 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 92.81 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 92.57 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.56 | |
| PF08626 | 1185 | TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC | 92.38 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 92.05 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 92.03 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.95 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 91.72 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 91.62 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 91.56 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 91.27 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 91.18 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 91.08 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.05 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 90.85 | |
| KOG4322 | 482 | consensus Anaphase-promoting complex (APC), subuni | 90.81 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 90.67 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 90.59 | |
| PF12739 | 414 | TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex | 90.4 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 90.3 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 90.13 | |
| KOG4322 | 482 | consensus Anaphase-promoting complex (APC), subuni | 90.07 | |
| PF08626 | 1185 | TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC | 89.93 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 89.92 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 89.8 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 88.9 | |
| cd01807 | 74 | GDX_N ubiquitin-like domain of GDX. GDX contains a | 88.8 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 88.66 | |
| cd01802 | 103 | AN1_N ubiquitin-like domain of AN1. AN1 (also know | 88.39 | |
| PTZ00044 | 76 | ubiquitin; Provisional | 88.37 | |
| KOG2561 | 568 | consensus Adaptor protein NUB1, contains UBA domai | 88.33 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 88.03 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 87.84 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 87.82 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 87.5 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 87.43 | |
| KOG4563 | 400 | consensus Cell cycle-regulated histone H1-binding | 87.28 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 87.09 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 87.02 | |
| cd01798 | 70 | parkin_N amino-terminal ubiquitin-like of parkin p | 86.85 | |
| KOG4014 | 248 | consensus Uncharacterized conserved protein (conta | 86.79 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 86.44 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 86.38 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 86.28 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 86.23 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 86.17 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 86.15 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 86.1 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 85.93 | |
| cd01810 | 74 | ISG15_repeat2 ISG15 ubiquitin-like protein, second | 85.92 | |
| cd01808 | 71 | hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC | 85.56 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 85.47 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 85.46 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 85.32 | |
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 85.13 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 84.68 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 84.18 | |
| PF07145 | 18 | PAM2: Ataxin-2 C-terminal region; InterPro: IPR009 | 84.1 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 84.06 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 83.67 | |
| KOG0686 | 466 | consensus COP9 signalosome, subunit CSN1 [Posttran | 83.65 | |
| cd01797 | 78 | NIRF_N amino-terminal ubiquitin-like domain of Np9 | 83.64 | |
| cd01792 | 80 | ISG15_repeat1 ISG15 ubiquitin-like protein, first | 83.58 | |
| cd01806 | 76 | Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn | 83.56 | |
| smart00101 | 244 | 14_3_3 14-3-3 homologues. 14-3-3 homologues mediat | 83.03 | |
| KOG0508 | 615 | consensus Ankyrin repeat protein [General function | 82.69 | |
| cd01804 | 78 | midnolin_N Ubiquitin-like domain of midnolin. midn | 82.57 | |
| KOG0508 | 615 | consensus Ankyrin repeat protein [General function | 81.6 | |
| PF10952 | 140 | DUF2753: Protein of unknown function (DUF2753); In | 81.56 | |
| cd01809 | 72 | Scythe_N Ubiquitin-like domain of Scythe protein. | 81.19 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 80.97 | |
| COG5187 | 412 | RPN7 26S proteasome regulatory complex component, | 80.84 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 80.64 | |
| KOG2561 | 568 | consensus Adaptor protein NUB1, contains UBA domai | 80.64 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 80.31 | |
| cd01794 | 70 | DC_UbP_C dendritic cell derived ubiquitin-like pro | 80.14 | |
| COG5187 | 412 | RPN7 26S proteasome regulatory complex component, | 80.01 |
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-130 Score=1252.02 Aligned_cols=1017 Identities=22% Similarity=0.295 Sum_probs=830.6
Q ss_pred EcCCCCceEEEccCh-hhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc----CceeEEeccCCCHHHHH
Q 000191 31 NLPDDTRVILKGIST-DRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK----PCVLSLTEEDFDEEGAA 105 (1888)
Q Consensus 31 ~lP~~~~~~~~~is~-d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk----~~~L~lVeepYter~Ar 105 (1888)
..|...+.+...+++ +.||||||+|++++.|||+|||+|.+ ++..|+++.++..+- ||+|.+|.+|||+|+||
T Consensus 37 i~p~~~~~~~~~l~~~~~v~~~~q~l~~~~~t~~~tc~~L~~--~~~~~d~~~~~~~i~~~~~~~~l~~v~~pY~~re~~ 114 (1236)
T KOG1839|consen 37 IQPSTGGLLSFELSSFSKVQDVRQVLLDRPLTCYITCLSLLL--DESKLDYFHIKKKISSGKPGCVLASVLGPYTPREAR 114 (1236)
T ss_pred ccCCCCCceEEEecCcchhhhHHHHHhcccccCceeEEEEEe--cccccccccceeeecCCCcceEEEEecccCChHHHH
Confidence 367777777777755 99999999999999999999999985 889999988777653 59999999999999999
Q ss_pred HHHHHHHHHHhccccCCCCCCCCCCCCC-Cccccc-ccc-cccccCCCCCCCCCCCCCCCCCCCCCcCCCCCCcccCCCC
Q 000191 106 AHVRRVLDIVACTTSFGPCGFDAGKNVP-DSKSAK-KTT-AKNEKDKQSQPPSSPQSKNSKSSNDVTVDGDGEMSHAFPK 182 (1888)
Q Consensus 106 ~Hvrrvrdll~~~~~~g~~~~~~g~~~~-~~~~~~-~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~pk 182 (1888)
+||++|||||... .+.+++....+. .+.... +++ ...++.+....+|.++.+++|++.++.+..+++ ..+-|+
T Consensus 115 ~Hv~~vrdlL~~~---~~~sa~~~~~~a~~~~~~~~~i~~~~~~~t~~~p~d~~~~~~~lp~~~e~~~~~~~~-~~~~~~ 190 (1236)
T KOG1839|consen 115 LHVHSVRDLLSSS---DFASAYSPLMKAFFDHNKLGNIPLGDRKNTWVDPEDCKPPFPDLPGEDERWGGDGGE-GRSGPK 190 (1236)
T ss_pred HHHHHHHHHHhcC---ChhhhhcchhhhhhhhccccCCCccccccCCCCccccCCCCCCCCccccccCCCCCc-CCCCcc
Confidence 9999999999522 233333333221 111111 111 112234446789999999999999999988883 455678
Q ss_pred ccccccccccccCCCChhhhhcccccccccCCCCCceEEEEEEEeCCceEEEEEeccceeecCC-----------Ccccc
Q 000191 183 LSSFYEFFSLSHLTPPLQFIRKAPKRRVEEISPDDHLLSLDVKLCNGKMVNVEACRKGFYSVGK-----------QRILC 251 (1888)
Q Consensus 183 l~~~~k~~s~S~wnPPp~~~r~~~~~~~~~~~~~Gdl~YL~v~t~Eg~~~~ITa~~~GFyvn~~-----------~~~~~ 251 (1888)
..+|+++|+||+|||||++||+ +||||||+|+|+||++||||||++|||||++ ++.++
T Consensus 191 ~~~~~~~La~sp~nppp~~~~~-----------~g~l~yL~v~t~e~~~~~it~~~~gfyvNns~~~~fdP~p~~~~~ls 259 (1236)
T KOG1839|consen 191 WAKCFRVLAFSPCNPPPERRVL-----------DGDLFYLHVVTLEGSVFHITAIIKGFYVNNSQSSKFDPSPSGSGDLS 259 (1236)
T ss_pred cchHHHHHhcCCCCCCCcceee-----------cccEEEEEEEEeeccEEEEEEeeeeEEEeccccCCCCCCCCCCccch
Confidence 9999999999999999999998 8999999999999999999999999999964 35799
Q ss_pred chHHHHHhhhcHHHHHHHHHHHHHhhccCCCccCCCcccCCccccCCCCCCCCCCCCCCCcccccc--CCCCCCCCCCCC
Q 000191 252 HNIVDLLGQLSRAFDNAYNELMNAFSERNKFGNLPYGFRANTWLIPPIAAQSPSVFPPLPAEDEAW--GGNGGGLGRDGK 329 (1888)
Q Consensus 252 HsLv~LL~~iSp~F~~~f~~l~k~~~~~~~fe~~~~~~~~~~Wl~p~~~~~~~~~~~~~~~Ed~~~--~~~~~Gq~rD~~ 329 (1888)
|||++||+++||.|+++|..++|+++++|+|||++++||..+|+|+++.+ ..+++|+|+.+. +.+.+|++||
T Consensus 260 ~sl~~ll~~~S~kfkk~~~~~~~~~s~~~~~er~~~~~~~~sw~~~~~~~----~~d~~r~~~A~~~~~~~~~G~~rd-- 333 (1236)
T KOG1839|consen 260 HSLIRLLASLSPKFKKAFQTILKKLSSEELAERVLLKTPDESWIVHPLPH----LADAARAEEALTGYYLEHIGYTRD-- 333 (1236)
T ss_pred hhHHHHHHhhChHHHHHHHHHHHHHhhhhHHHhccccCCCccccccCCCc----hHHHHhhHHHhccceeccCccccc--
Confidence 99999999999999999999999999999999999999999999998876 455789999875 4467999999
Q ss_pred CCCcchHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc-cccCCCC-----CCccccCCeeEEeecc
Q 000191 330 SDLIPWANEFLFVASMPCKTAEERQIRDRKAFLLHNLFVDVAIFRAIKAVH-HVMGKPE-----LIYPSNCKILYTEIIG 403 (1888)
Q Consensus 330 ~~~rdWNeEfQ~~rELP~~t~~ER~~RdR~ifkl~sDFVdAA~~gA~~VI~-~~m~~~~-----~~~fi~nnIfFs~~vg 403 (1888)
||||||++||||+++++||++|+|.+|||+.||+++|++|||+||+ ++++.+. .|||+||||||++++
T Consensus 334 -----wNee~Qt~re~~~~~l~dr~~rer~~~Kv~~df~~~a~~Ga~~vi~~ni~ainp~e~~~~qm~i~~nIf~s~~~- 407 (1236)
T KOG1839|consen 334 -----WNEELQTTREMPHKDLPDRGARERNLNKVRGDFVKAATRGALAVISGNIVAINPEEPTILQMFIWNNIFFSEGF- 407 (1236)
T ss_pred -----hhhhhhhhhhcCccccchhhhhhhccccchhhhcccccccccccccCccccCCCchHHHHHHHHHhhhheeeec-
Confidence 9999999999999999999999999999999999999999999999 6666432 479999999999873
Q ss_pred ceeEeeecccccccccccccccCccccCcchhhhhhhhhccccccccccccCCcccccEEEEEecCeEEEEE--e-cccc
Q 000191 404 GLRIAIMKDASNACCKVDTKIDGSQATGVDKNNLVERNLLKGITADENTAAHDVATLGVVNVRYCGYIAVVK--V-QERE 480 (1888)
Q Consensus 404 ~~~~~v~rD~~D~~~k~d~~~~G~~~~g~~~a~~A~~n~LkGv~ay~~~~v~gL~TlgtvvVDYrGyRvvAq--v-PGi~ 480 (1888)
+| +++ |+. .+|+.+|+.|..+||+|++.|..++++||+||||++||||||||+|| + |||+
T Consensus 408 ----dv-~~~----y~~--------~g~dvaa~~a~s~dl~g~r~~n~~d~~~l~~Lgt~~vDy~g~rv~Aq~i~~p~~l 470 (1236)
T KOG1839|consen 408 ----DV-RGH----YKL--------GGGDVAAYAAPSTDLNGKRLYNTVDVPGLKTLGTTVVDYRGYRVVAQVIINPGIL 470 (1236)
T ss_pred ----cc-ccc----ccc--------cchhHHhhhhccccccccccccccchhhhcchhheeeeccCceEEEEeecCCcch
Confidence 23 343 442 67788899999999999999999999999999999999999999999 6 9998
Q ss_pred ccccCC--cccccccccCcCcccccc-----------ccccccccccccCCCCCCCCCCCCCccccccc--ccchhhHHH
Q 000191 481 NKKVGP--LFQSIELEQPEGGANALN-----------INSLRLLIHETTTLEDNKPAPNLQNLEREELN--ASQMFVERL 545 (1888)
Q Consensus 481 ~~~~~~--~~~~i~l~~~egG~~~l~-----------~~~L~l~~H~v~~~~~~~~v~~~~~~e~~~l~--~~R~YvlDl 545 (1888)
++.+.+ .++++++ |+..+. .+.+.+++|.+.+...+....++.++++++|. |||||++||
T Consensus 471 ~~d~~~~~~~g~~~~-----~K~~~~~e~~~~l~~~~s~~l~i~~h~~i~~~d~~~~eL~~s~eskgi~g~DgR~yllDL 545 (1236)
T KOG1839|consen 471 EGDQSQSVIYGPVDE-----GKELLSEEAYQRLLERASKLLLISPHPVINAKDTVLPELGISFESKGISGVDGRHYLLDL 545 (1236)
T ss_pred hcccccceeeccccc-----cccccccHHHHHhhcccccccccCCccccchhhccccccccccccccccCCCcchhHHHH
Confidence 766544 5555554 333322 37899999999877766778889999999996 899999999
Q ss_pred Hhhhhhhh-----------hccCCcccccccHHHHHHHHHHHHHHHHHHHhHhhHHHHHhhhhhhhhhhhhhhccCCCcc
Q 000191 546 LEESIAKL-----------EEEKPEREHFVRWELGACWIQHLQDQKNAEKDKKLSKEKAKKLSNEKAKSEMKVEGLGTPL 614 (1888)
Q Consensus 546 ~R~~~~~l-----------e~e~~~~~~~LRpELv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 614 (1888)
+|++|+++ .+.++|++++|||||+..|++|+..-.....++... +....+.... .+....++..
T Consensus 546 ~~t~Pld~~~L~~~~~~~~~~k~pHkl~~lr~Eli~~f~~~~l~~~i~~~e~~~~--~~~~ds~~~~-~~~d~~~~~~-- 620 (1236)
T KOG1839|consen 546 MHTRPLDLNFLGVEAVEELAEKYPHKLSLLRPELILKFYEHRLLAFIVAVENAAE--DYGFDSSNPF-KKSDAIGLVP-- 620 (1236)
T ss_pred HhccCCcccccchhhhhhccccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcchh--hccCCccccc-cccchhhHHH--
Confidence 99987743 346899999999999999999865443332221111 0000000000 0000000000
Q ss_pred hhhcccccccCCCCccccccccccccCCCCcccccccchhhhhhhhhh--hhhhHHHHhhcCChHHhhhh--cccccc--
Q 000191 615 KSLKNNRKKSEGSNHKIHSETLKSQADGVNGESEKATSASIEARLESR--DKENELALKNLLSDEAFARL--KESETG-- 688 (1888)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~--~~e~~~~~~~~L~~dAF~~~--~~~~~~-- 688 (1888)
. +..+.-+..++- ++.+.... ........ ..-...+..--++++.|... .-..++
T Consensus 621 -----v-----------~~l~~~is~d~~--eS~~~~~~-dav~~~~~al~k~~~~~~~~~fnp~~f~s~~v~~~~t~~~ 681 (1236)
T KOG1839|consen 621 -----V-----------HKLVNCISADGR--ESSKLSLD-DAVKYATKALVKLVAVCGPYGFNPAGFYSLAVVLYHTEDF 681 (1236)
T ss_pred -----H-----------HHHHHhhccccc--cccccchH-HHHHHHHHHHHHHHhhhcccccCccccccCceEecCcccc
Confidence 0 000000000000 00000000 00000000 00001122234555665542 111222
Q ss_pred cccccHHHHHHHHHHHHHHchHHHHHHHhccCCCCCCCcchHHHHHHhcccccchhHHHHHHhh-------hhhHHHHHH
Q 000191 689 LHCKSLEELIDLSHNYYVEVALPKLVTDFGSLELSPVDGRTLTDFMHTRGLQMRSLGHVVKLSE-------KLSHVQSLC 761 (1888)
Q Consensus 689 ~~~~~~eelv~~as~fL~~~~IP~lV~dl~~~~~~P~DG~sLt~~lH~rGINmRYLG~Va~l~~-------~L~~l~~l~ 761 (1888)
.....+++.+.++++||...+||.+++++.++.+.|+||++|+++||..|||+||||+++..+. .+.++.+|+
T Consensus 682 ~~a~~~~qk~~d~~Erll~~~iPd~~Ks~~d~sv~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~a~~~~v~l~~l~ 761 (1236)
T KOG1839|consen 682 NQAAIQQQKVLDINERLLGLDIPDTMKSYGDLSVFPYDGQHLELALHYVGRNLRYLGKTCGLSHPNTAATYINVALMELG 761 (1236)
T ss_pred chhhhhhHhHHHHHHHHhccccchhHHhccccceeeecccHHHHHHHHhhHHHHHhhccccccCccccchhhhHHHHHHH
Confidence 2345567889999999999999999999999999999999999999999999999999998763 267788999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhhccccCCCC-----------C-----------CCC--------
Q 000191 762 IHEMIVRAFKHIIQAVISAVGNTQRMAVSIAAALNLMLGVHESDGL-----------N-----------KSH-------- 811 (1888)
Q Consensus 762 ~~EMIaRAaKHIlRa~lr~l~~~~~la~AIsHfLNcLLG~~~~~~~-----------~-----------~~~-------- 811 (1888)
+-|++.|++||+|+.++|. .....+..+++|||||+|+..+.... . ...
T Consensus 762 ~~ei~~RslKhvlK~~~r~-l~~~~i~ta~SH~ln~~ls~~~~av~~~~t~~~~~ka~~~~~~~~~~g~~k~~~S~~s~~ 840 (1236)
T KOG1839|consen 762 VGEIALRSLKHVLKDNLRL-LGADHIQTAASHALNCLLSVMEAAVQKEQTTLEILKAKDLRTQDAAAGTPKPDASISSKG 840 (1236)
T ss_pred HHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHhhcccccCCCccchHHHHhhhhhhhhhhccCCCCccccccccc
Confidence 9999999999999999998 58889999999999999998544210 0 000
Q ss_pred -CCchhHHHHHHHHHHHhhccccCCCChh------hhhHHHHHHHHHHHhhhhhhcccccCCCC---CChhHHHHhhhcc
Q 000191 812 -NVHPLVWRWLELFLMKRYEWDLNGLNFK------DVRKFAILRGLCHKVGIELVSRDFDMDSP---SPFRKIDVVSLVP 881 (1888)
Q Consensus 812 -~~~~~lw~~I~~~lk~rf~y~L~~~~~~------~l~klsLLReLc~klGIqL~aR~Y~fdsa---~~F~~eDIlnl~P 881 (1888)
-....+|++|+...+.+|++........ ...++++.+..|.+.|++..+|.|+|+.. ..|...||+++.|
T Consensus 841 ~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~r~~~~e~~~~ks~f~~~Di~~~~p 920 (1236)
T KOG1839|consen 841 HLSVSDLLKYITADSKNKFTAAHDVKSRETILLKNGKSKIAVEKLEKKKRELQKPARNYDFESSEPKSEFNDSDILNLRP 920 (1236)
T ss_pred ccchhHHHHhccccccccccchhhhhHHHHHhhhcccchhHHHHHHHHhhhcchhhhhccccccCCCCCCCccccccccc
Confidence 1123599999999999999987755443 35588999999999999999999999984 7899999999999
Q ss_pred chhhhcccHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 000191 882 VHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKA 961 (1888)
Q Consensus 882 vvK~~~~~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKA 961 (1888)
++|+..+...++...++.|+..+.+|.+.+|.+ .-+++.++.+++|..|++++.+|..||.++.++|++++|+.+.++|
T Consensus 921 ~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka 999 (1236)
T KOG1839|consen 921 VIKHSSPTVSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKA 999 (1236)
T ss_pred ccccCCCccchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccc
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHH
Q 000191 962 LDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRY 1041 (1888)
Q Consensus 962 L~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~ 1041 (1888)
+.+++|++|.|++++...|.+|+.+++..++...|+..+.+|++++...+|++||.++.+..|++.+++.+++++.|+++
T Consensus 1000 ~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~ 1079 (1236)
T KOG1839|consen 1000 CIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRY 1079 (1236)
T ss_pred eeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 000191 1042 LHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQE 1121 (1888)
Q Consensus 1042 LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~Ae 1121 (1888)
++.|+++..+++|+.+..++.+++.+|+++..++++..|+.+.+.++.||...+|++|.++.++..|+..+++.++..++
T Consensus 1080 le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~~hsrt~~S~~~~~~~T~~~v~~Qk 1159 (1236)
T KOG1839|consen 1080 LESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQLGPDHSRTKESSEWLNLSTAIAVKIQK 1159 (1236)
T ss_pred HHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhCCCcccchhhHHHHHHhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888887776
Q ss_pred HHH
Q 000191 1122 AAR 1124 (1888)
Q Consensus 1122 Al~ 1124 (1888)
.+.
T Consensus 1160 ~~~ 1162 (1236)
T KOG1839|consen 1160 KLL 1162 (1236)
T ss_pred HHH
Confidence 554
|
|
| >PF13236 CLU: Clustered mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=383.81 Aligned_cols=197 Identities=19% Similarity=0.210 Sum_probs=164.3
Q ss_pred chHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcc-ccCC-----CCCCccccCCeeEEeeccceeE
Q 000191 334 PWANEFLFVASMPCKTAEERQIRDRKAFLLHNLFVDVAIFRAIKAVHH-VMGK-----PELIYPSNCKILYTEIIGGLRI 407 (1888)
Q Consensus 334 dWNeEfQ~~rELP~~t~~ER~~RdR~ifkl~sDFVdAA~~gA~~VI~~-~m~~-----~~~~~fi~nnIfFs~~vg~~~~ 407 (1888)
|||||||+++|||++|++||+.|+|+|++|++|||+||++||++||++ +++. +..++|+||||||||+.+
T Consensus 1 DWNeefQ~~~elp~~t~~er~~r~r~l~~l~~dFv~aA~~~a~~Ii~~~~~p~n~~~~~~~~~y~~nnIff~~~~d---- 76 (221)
T PF13236_consen 1 DWNEEFQSLRELPRETLEERIERDRKLSKLHSDFVEAATRGAMAIIDENILPINPKEIKPGQKYLYNNIFFSFADD---- 76 (221)
T ss_pred ChHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCCCCCCcCEEEECCEEEEEecC----
Confidence 599999999999999999999999999999999999999999999994 4442 235799999999999733
Q ss_pred eeecccccccccccccccCccccCcchhhhhhhhhccccccccccccCCcccccEEEEEecCeEEEEE--eccccccccC
Q 000191 408 AIMKDASNACCKVDTKIDGSQATGVDKNNLVERNLLKGITADENTAAHDVATLGVVNVRYCGYIAVVK--VQERENKKVG 485 (1888)
Q Consensus 408 ~v~rD~~D~~~k~d~~~~G~~~~g~~~a~~A~~n~LkGv~ay~~~~v~gL~TlgtvvVDYrGyRvvAq--vPGi~~~~~~ 485 (1888)
..|.+ . ..+|+.+|++|++|||+|+++|.+++++|||||+|||||||||||+|| +|||++.+..
T Consensus 77 -----~~~~~-~--------~~ggdeaA~~aa~~dLkg~~~~~~~~~~~l~~~lt~iVDY~G~Rv~AqsilPg~~~~~~~ 142 (221)
T PF13236_consen 77 -----SRGIY-E--------NLGGDEAARKAAGHDLKGVNALNQADIPGLHTPLTAIVDYRGYRVLAQSILPGILNREQE 142 (221)
T ss_pred -----ccccc-c--------cccccHHHHHHhhccHHHHHHHHhCCCCCCcccCEEEEEeCCEEEEEEecCCcCCCCCCC
Confidence 21222 1 256788999999999999999999999999999999999999999999 6999854322
Q ss_pred CcccccccccCcCccccccc-----------cccccccccccCCCCCCCCCCCCCccccccc--ccchhhHHHHhhhhhh
Q 000191 486 PLFQSIELEQPEGGANALNI-----------NSLRLLIHETTTLEDNKPAPNLQNLEREELN--ASQMFVERLLEESIAK 552 (1888)
Q Consensus 486 ~~~~~i~l~~~egG~~~l~~-----------~~L~l~~H~v~~~~~~~~v~~~~~~e~~~l~--~~R~YvlDl~R~~~~~ 552 (1888)
+...| +..++|.++.+. +.|+|+.|.|++.++ .+.++++.|.+++. |+|+|||||+|++|++
T Consensus 143 ~~vvY---Gs~d~g~~i~~~~~~~~~l~~~a~~l~Lk~H~v~~~~~--~~~l~~s~d~kg~~G~D~R~YilDl~R~~P~d 217 (221)
T PF13236_consen 143 STVVY---GSSDGGKTIHSDEEFHELLKKIAKALNLKPHKVGDSEG--SVELYGSADIKGIIGSDGRYYILDLARTFPPD 217 (221)
T ss_pred ceEEE---CCcCCCCeecCCHHHHHHHHHHHHHhCcCcceecCCCC--cEEEEeeeeeEEEEcCCCCEEEEeccccCCCC
Confidence 22222 334557666653 799999999986653 77889999999986 8999999999999976
Q ss_pred h
Q 000191 553 L 553 (1888)
Q Consensus 553 l 553 (1888)
.
T Consensus 218 ~ 218 (221)
T PF13236_consen 218 V 218 (221)
T ss_pred c
Confidence 4
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=448.06 Aligned_cols=934 Identities=37% Similarity=0.489 Sum_probs=640.5
Q ss_pred cCCCCccccccccccccCCCChhhhhcccccccccCCCCCceEEEEEEEeCCceEEEEEeccceeecCCCccccchHHHH
Q 000191 178 HAFPKLSSFYEFFSLSHLTPPLQFIRKAPKRRVEEISPDDHLLSLDVKLCNGKMVNVEACRKGFYSVGKQRILCHNIVDL 257 (1888)
Q Consensus 178 ~~~pkl~~~~k~~s~S~wnPPp~~~r~~~~~~~~~~~~~Gdl~YL~v~t~Eg~~~~ITa~~~GFyvn~~~~~~~HsLv~L 257 (1888)
.+.+++..++.+|..-+.+||.-+..+..+. ..+|.+-+-+..+.|+..++-+.+.|||-..+...++|+++||
T Consensus 50 ~~~~~v~~~~q~l~~~~~t~~~tc~~L~~~~------~~~d~~~~~~~i~~~~~~~~l~~v~~pY~~re~~~Hv~~vrdl 123 (1236)
T KOG1839|consen 50 SSFSKVQDVRQVLLDRPLTCYITCLSLLLDE------SKLDYFHIKKKISSGKPGCVLASVLGPYTPREARLHVHSVRDL 123 (1236)
T ss_pred cCcchhhhHHHHHhcccccCceeEEEEEecc------cccccccceeeecCCCcceEEEEecccCChHHHHHHHHHHHHH
Confidence 3456788899999999999999888774332 3788999999999999999999999999988899999999999
Q ss_pred HhhhcHHHHHHHHHHHHHhhccCCCccCCCcccCCccccCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCcchHH
Q 000191 258 LGQLSRAFDNAYNELMNAFSERNKFGNLPYGFRANTWLIPPIAAQSPSVFPPLPAEDEAWGGNGGGLGRDGKSDLIPWAN 337 (1888)
Q Consensus 258 L~~iSp~F~~~f~~l~k~~~~~~~fe~~~~~~~~~~Wl~p~~~~~~~~~~~~~~~Ed~~~~~~~~Gq~rD~~~~~rdWNe 337 (1888)
| .+..|..+|..+|+.+..++|+.++|.++..++|++|.. ....++++|.||+.|+++++ ++|-|. .|+.
T Consensus 124 L--~~~~~~sa~~~~~~a~~~~~~~~~i~~~~~~~t~~~p~d---~~~~~~~lp~~~e~~~~~~~-~~~~~~----~~~~ 193 (1236)
T KOG1839|consen 124 L--SSSDFASAYSPLMKAFFDHNKLGNIPLGDRKNTWVDPED---CKPPFPDLPGEDERWGGDGG-EGRSGP----KWAK 193 (1236)
T ss_pred H--hcCChhhhhcchhhhhhhhccccCCCccccccCCCCccc---cCCCCCCCCccccccCCCCC-cCCCCc----ccch
Confidence 9 899999999999999999999999999999999999942 33467899999999999987 888766 6999
Q ss_pred HHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccccCCC-CCCccc---cCCeeEEeeccceeEeeeccc
Q 000191 338 EFLFVASMPCKTAEERQIRDRKAFLLHNLFVDVAIFRAIKAVHHVMGKP-ELIYPS---NCKILYTEIIGGLRIAIMKDA 413 (1888)
Q Consensus 338 EfQ~~rELP~~t~~ER~~RdR~ifkl~sDFVdAA~~gA~~VI~~~m~~~-~~~~fi---~nnIfFs~~vg~~~~~v~rD~ 413 (1888)
+|-.|.-+||+++++|..|++.+|.||..|++.-++.++++|++++.++ ....|- .++ |++...|-++-
T Consensus 194 ~~~~La~sp~nppp~~~~~~g~l~yL~v~t~e~~~~~it~~~~gfyvNns~~~~fdP~p~~~-------~~ls~sl~~ll 266 (1236)
T KOG1839|consen 194 CFRVLAFSPCNPPPERRVLDGDLFYLHVVTLEGSVFHITAIIKGFYVNNSQSSKFDPSPSGS-------GDLSHSLIRLL 266 (1236)
T ss_pred HHHHHhcCCCCCCCcceeecccEEEEEEEEeeccEEEEEEeeeeEEEeccccCCCCCCCCCC-------ccchhhHHHHH
Confidence 9999999999999999999999999999999999999999999988764 222332 233 11211121222
Q ss_pred ccccccccccccCccccCcchhhhhhhhhccccccccccccCCcc----------cccEEEEEecCeEEEEEeccccccc
Q 000191 414 SNACCKVDTKIDGSQATGVDKNNLVERNLLKGITADENTAAHDVA----------TLGVVNVRYCGYIAVVKVQERENKK 483 (1888)
Q Consensus 414 ~D~~~k~d~~~~G~~~~g~~~a~~A~~n~LkGv~ay~~~~v~gL~----------TlgtvvVDYrGyRvvAqvPGi~~~~ 483 (1888)
.+-+.|. .+-.+...--....+.++++.++ ...++..++=+- -++-..++.+||.-.-- +
T Consensus 267 ~~~S~kf-kk~~~~~~~~~s~~~~~er~~~~--~~~~sw~~~~~~~~~d~~r~~~A~~~~~~~~~G~~rdwN-------e 336 (1236)
T KOG1839|consen 267 ASLSPKF-KKAFQTILKKLSSEELAERVLLK--TPDESWIVHPLPHLADAARAEEALTGYYLEHIGYTRDWN-------E 336 (1236)
T ss_pred HhhChHH-HHHHHHHHHHHhhhhHHHhcccc--CCCccccccCCCchHHHHhhHHHhccceeccCccccchh-------h
Confidence 2222221 00000000011145677788887 444444444331 12245566666644311 1
Q ss_pred cCCccccccc-ccCcCccccccccccccccccccCCCCCCCCCCCCCcccccccccchhhH-HHHhhhhhhhhccCCccc
Q 000191 484 VGPLFQSIEL-EQPEGGANALNINSLRLLIHETTTLEDNKPAPNLQNLEREELNASQMFVE-RLLEESIAKLEEEKPERE 561 (1888)
Q Consensus 484 ~~~~~~~i~l-~~~egG~~~l~~~~L~l~~H~v~~~~~~~~v~~~~~~e~~~l~~~R~Yvl-Dl~R~~~~~le~e~~~~~ 561 (1888)
..+......- +.+|++.+..+..+++--.|+.-... -...+.+.+ -.+.+.--+++ -|+..++..++.......
T Consensus 337 e~Qt~re~~~~~l~dr~~rer~~~Kv~~df~~~a~~G--a~~vi~~ni--~ainp~e~~~~qm~i~~nIf~s~~~dv~~~ 412 (1236)
T KOG1839|consen 337 ELQTTREMPHKDLPDRGARERNLNKVRGDFVKAATRG--ALAVISGNI--VAINPEEPTILQMFIWNNIFFSEGFDVRGH 412 (1236)
T ss_pred hhhhhhhcCccccchhhhhhhccccchhhhccccccc--ccccccCcc--ccCCCchHHHHHHHHHhhhheeeecccccc
Confidence 1222232333 67899999999888888877642221 111111211 11222222221 122223333332221111
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHhHhhHHHHHhhhhhhhhhhhhhhccCCCcchhhcccccccCCCC--ccccccccccc
Q 000191 562 HFVRWELGACWIQHLQDQKNAEKDKKLSKEKAKKLSNEKAKSEMKVEGLGTPLKSLKNNRKKSEGSN--HKIHSETLKSQ 639 (1888)
Q Consensus 562 ~~LRpELv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 639 (1888)
+ |++.+|+++++.- ..+.. .. .......++...+||+.....++......+.. .....++.+..
T Consensus 413 y----~~~g~dvaa~~a~-s~dl~-------g~--r~~n~~d~~~l~~Lgt~~vDy~g~rv~Aq~i~~p~~l~~d~~~~~ 478 (1236)
T KOG1839|consen 413 Y----KLGGGDVAAYAAP-STDLN-------GK--RLYNTVDVPGLKTLGTTVVDYRGYRVVAQVIINPGILEGDQSQSV 478 (1236)
T ss_pred c----cccchhHHhhhhc-ccccc-------cc--ccccccchhhhcchhheeeeccCceEEEEeecCCcchhcccccce
Confidence 1 8899999997622 11100 00 00111224566788887766666654333211 00000000000
Q ss_pred cCCCCcccccccchhhhhhhhhhhhhhHHHHhhcCChHHhhhhcccccccccccHHHHHHHHHHHHHHchHHHHHHHhcc
Q 000191 640 ADGVNGESEKATSASIEARLESRDKENELALKNLLSDEAFARLKESETGLHCKSLEELIDLSHNYYVEVALPKLVTDFGS 719 (1888)
Q Consensus 640 ~~~~~~~~~n~~~~~~~~~~~~~~~e~~~~~~~~L~~dAF~~~~~~~~~~~~~~~eelv~~as~fL~~~~IP~lV~dl~~ 719 (1888)
+ .+ .....+..++.++|.+.....+..+.......+.++.. +.|++...+.+
T Consensus 479 ~------------~g-----------~~~~~K~~~~~e~~~~l~~~~s~~l~i~~h~~i~~~d~-----~~~eL~~s~es 530 (1236)
T KOG1839|consen 479 I------------YG-----------PVDEGKELLSEEAYQRLLERASKLLLISPHPVINAKDT-----VLPELGISFES 530 (1236)
T ss_pred e------------ec-----------cccccccccccHHHHHhhcccccccccCCccccchhhc-----ccccccccccc
Confidence 0 00 01125667888899988887776666555666666532 78888888888
Q ss_pred CCCCCCCcc-hHHHHHHhcccccchhH--HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHH
Q 000191 720 LELSPVDGR-TLTDFMHTRGLQMRSLG--HVVKLSEKLSHVQSLCIHEMIVRAFKHIIQAVISAVGNTQRMAVSIAAALN 796 (1888)
Q Consensus 720 ~~~~P~DG~-sLt~~lH~rGINmRYLG--~Va~l~~~L~~l~~l~~~EMIaRAaKHIlRa~lr~l~~~~~la~AIsHfLN 796 (1888)
..+.|.||+ .|.|+||.++..|+||| ++..+..+++|...+|..|||.+.++|.+.+.++.+ -|
T Consensus 531 kgi~g~DgR~yllDL~~t~Pld~~~L~~~~~~~~~~k~pHkl~~lr~Eli~~f~~~~l~~~i~~~-------------e~ 597 (1236)
T KOG1839|consen 531 KGISGVDGRHYLLDLMHTRPLDLNFLGVEAVEELAEKYPHKLSLLRPELILKFYEHRLLAFIVAV-------------EN 597 (1236)
T ss_pred ccccCCCcchhHHHHHhccCCcccccchhhhhhccccCchhhhhcCHHHHHHHHHHHHHHHHHHH-------------hc
Confidence 899999998 89999999999999999 999998899999999999999999999999888663 11
Q ss_pred HhhccccCCCCCCCCCCchhHHHHHHHHHHHhhccccCCCChhhhhHHHHHHHHHHHhhhhhhcccccCCCCCChhHHHH
Q 000191 797 LMLGVHESDGLNKSHNVHPLVWRWLELFLMKRYEWDLNGLNFKDVRKFAILRGLCHKVGIELVSRDFDMDSPSPFRKIDV 876 (1888)
Q Consensus 797 cLLG~~~~~~~~~~~~~~~~lw~~I~~~lk~rf~y~L~~~~~~~l~klsLLReLc~klGIqL~aR~Y~fdsa~~F~~eDI 876 (1888)
+.- +|.|++...|...|+
T Consensus 598 ~~~--------------------------------------------------------------~~~~ds~~~~~~~d~ 615 (1236)
T KOG1839|consen 598 AAE--------------------------------------------------------------DYGFDSSNPFKKSDA 615 (1236)
T ss_pred chh--------------------------------------------------------------hccCCccccccccch
Confidence 100 566788888888888
Q ss_pred hhhccchhhhcccHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHH
Q 000191 877 VSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATI 956 (1888)
Q Consensus 877 lnl~PvvK~~~~~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~ 956 (1888)
....+++++..+.+.+.+ +.. .-..++|.+++-.++......++..+...+-++.+ +.+++..+++.+|..
T Consensus 616 ~~~~~v~~l~~~is~d~~---eS~-----~~~~~dav~~~~~al~k~~~~~~~~~fnp~~f~s~-~v~~~~t~~~~~a~~ 686 (1236)
T KOG1839|consen 616 IGLVPVHKLVNCISADGR---ESS-----KLSLDDAVKYATKALVKLVAVCGPYGFNPAGFYSL-AVVLYHTEDFNQAAI 686 (1236)
T ss_pred hhHHHHHHHHHhhccccc---ccc-----ccchHHHHHHHHHHHHHHHhhhcccccCccccccC-ceEecCccccchhhh
Confidence 888888888888777665 111 12345889998889888888888877665555555 999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH
Q 000191 957 YQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH 1036 (1888)
Q Consensus 957 ~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~ye 1036 (1888)
+.++++++.++.+|.++|+++..|..++.+++....+.+|+.+-.+++.+..+.++..||..+.+|.+.+++-...+ +
T Consensus 687 ~~qk~~d~~Erll~~~iPd~~Ks~~d~sv~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~a~~~~v~l~~l~~~--e 764 (1236)
T KOG1839|consen 687 QQQKVLDINERLLGLDIPDTMKSYGDLSVFPYDGQHLELALHYVGRNLRYLGKTCGLSHPNTAATYINVALMELGVG--E 764 (1236)
T ss_pred hhHhHHHHHHHHhccccchhHHhccccceeeecccHHHHHHHHhhHHHHHhhccccccCccccchhhhHHHHHHHHH--H
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888877776 8
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 000191 1037 VALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKA 1116 (1888)
Q Consensus 1037 eAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka 1116 (1888)
-++++++.+++.+.+..+.++..++.+ +.|+.++.-++. |..+.+-.++++++. +.++..
T Consensus 765 i~~RslKhvlK~~~r~l~~~~i~ta~S-H~ln~~ls~~~~---av~~~~t~~~~~ka~----~~~~~~------------ 824 (1236)
T KOG1839|consen 765 IALRSLKHVLKDNLRLLGADHIQTAAS-HALNCLLSVMEA---AVQKEQTTLEILKAK----DLRTQD------------ 824 (1236)
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHH-HHHHHHhhcccc---cCCCccchHHHHhhh----hhhhhh------------
Confidence 899999999999999999999999888 667766655443 555555555555433 111111
Q ss_pred HHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhccccCCCCCCCCCCcchhhhhcc
Q 000191 1117 FEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDNNLTSPDGSSKEVLRES 1196 (1888)
Q Consensus 1117 ~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~q~~~~a~~eIa~LEikyet 1196 (1888)
+.+ +...++..+....+.....++.+|..-....+.+.....++.++........ ++..+ ...
T Consensus 825 -----~~~-g~~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~~~~~~~~---------~~~~~--~~~ 887 (1236)
T KOG1839|consen 825 -----AAA-GTPKPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETILLKNGKSK---------IAVEK--LEK 887 (1236)
T ss_pred -----hcc-CCCCcccccccccccchhHHHHhccccccccccchhhhhHHHHHhhhcccch---------hHHHH--HHH
Confidence 111 4455566677788888888998887766666666666667766666444432 11000 000
Q ss_pred ccccccCCCCCCCCcccc-CCCCCchhhhhhhhhcccCCCCccc-----cccccccccCCCCccccc-cccccccccccc
Q 000191 1197 SDEETHAPEPESDTDVNQ-GSSIPFQQQELVVEESAVEKPNITE-----EISSAIHEEGDDGWQPVQ-RLRSAGSYGRRL 1269 (1888)
Q Consensus 1197 ~eKEk~I~~L~~ek~e~e-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~g~~~~~-~~~s~~~~~~~~ 1269 (1888)
.+.+.++ ....+..+. .....++..+........+.+.... ....-+....++||++.. ++||++...++.
T Consensus 888 ~~~~i~~--~~r~~~~e~~~~ks~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~ 965 (1236)
T KOG1839|consen 888 KKRELQK--PARNYDFESSEPKSEFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVM 965 (1236)
T ss_pred Hhhhcch--hhhhccccccCCCCCCCcccccccccccccCCCccchhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhh
Confidence 1111111 111111111 0001111111111111122222211 111224566799999964 599999999999
Q ss_pred ccccccccccccccccccccccccccccCCCCCCceeeccccccCCCC
Q 000191 1270 KQRRATIGKVHSYQKRNADAVIDYSSAKSSHHSSRYYLLKKRAVSHGS 1317 (1888)
Q Consensus 1270 ~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 1317 (1888)
+.++|.+++.|.+..+......||...++ ++.++++.+.|...--+
T Consensus 966 ~~~h~~~~~~~~~La~l~~~~~d~~~Ai~--~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen 966 GVLHPEVASKYRSLAKLSNRLGDNQEAIA--QQRKACIISERVLGKDS 1011 (1236)
T ss_pred hhcchhHHHHHHHHHHHHhhhcchHHHHH--hcccceeeechhccCCC
Confidence 99999999999999999999999988774 66788888888887533
|
|
| >PF12807 eIF3_p135: Translation initiation factor eIF3 subunit 135 | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=282.43 Aligned_cols=147 Identities=35% Similarity=0.661 Sum_probs=130.9
Q ss_pred cCCCCCCCcchHHHHHHhcccccchhHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH
Q 000191 719 SLELSPVDGRTLTDFMHTRGLQMRSLGHVVKLS-EKLSHVQSLCIHEMIVRAFKHIIQAVISAVGNTQRMAVSIAAALNL 797 (1888)
Q Consensus 719 ~~~~~P~DG~sLt~~lH~rGINmRYLG~Va~l~-~~L~~l~~l~~~EMIaRAaKHIlRa~lr~l~~~~~la~AIsHfLNc 797 (1888)
++++.|+||.+|+++||++||||||||+|++++ ..+++++.||++|||+|++||+||.++|. .+...+..+|+|||||
T Consensus 2 ~~~~~p~Dg~~L~~~lH~~GIN~RyLG~v~~~~~~~~~~l~~l~~~EmiaR~~K~i~r~~l~~-~~~~~~~~~v~~~lN~ 80 (169)
T PF12807_consen 2 SLSVSPIDGQSLTEILHRRGINMRYLGKVAKLIKSSLPHLRRLCLQEMIARAAKHILREYLRS-VPQSELSSAVSHFLNC 80 (169)
T ss_pred CccccCcccHHHHHHHHHcCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchhhHHHHHHHHHHH
Confidence 567889999999999999999999999999986 46899999999999999999999999999 4778999999999999
Q ss_pred hhccccCCCCCCC-------------C----CCchhHHHHHHHHHHHhhccccCCCChh---hhhHHHHHHHHHHHhhhh
Q 000191 798 MLGVHESDGLNKS-------------H----NVHPLVWRWLELFLMKRYEWDLNGLNFK---DVRKFAILRGLCHKVGIE 857 (1888)
Q Consensus 798 LLG~~~~~~~~~~-------------~----~~~~~lw~~I~~~lk~rf~y~L~~~~~~---~l~klsLLReLc~klGIq 857 (1888)
|||...+...... . -....+|++|..+++.+|+|+++.+|.+ .+++++|||+||+++|||
T Consensus 81 llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~l~~~I~~ev~~rf~y~l~~~~~~~~~~~~~~~LLR~ic~k~GiQ 160 (169)
T PF12807_consen 81 LLGSSSNSKPKKEKKEKNSNSKSKSDSSWSKLTPSSLWSEIEKEVKSRFRYELPEDWFDEKYGLQKIQLLREICQKTGIQ 160 (169)
T ss_pred hhCCCccccccccccchhccccccccchhhhcCcHHHHHHHHHHHHHhcCCcCchHHhhhhccccHHHHHHHHHHHhCeE
Confidence 9998776521100 0 0123699999999999999999999998 899999999999999999
Q ss_pred hhcccccCC
Q 000191 858 LVSRDFDMD 866 (1888)
Q Consensus 858 L~aR~Y~fd 866 (1888)
+.+|+|+|+
T Consensus 161 l~~r~Y~f~ 169 (169)
T PF12807_consen 161 LLARDYDFT 169 (169)
T ss_pred eeeecCCCC
Confidence 999999986
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-24 Score=267.13 Aligned_cols=284 Identities=25% Similarity=0.299 Sum_probs=259.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...+..+|..|..+|+|+.|+.++++|+++....+|.+|+.++.++..+|.+|..+++|.+|+.+|++|+.+.+.++|.+
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 45555589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
|+.++.++.|||.+|...|+|++|..|+++|+.|.++.+|..|+.++..+.+++.++..++++++|+.+|+++++++...
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCC
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF--ESKAFEQQEAARNGTRKP 1130 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L--~qka~e~AeAl~~~~~~~ 1130 (1888)
+|.+++.++.++.+||.+|..+|+|++|.+++++|+++.++..|..+..+...+..|+.. ..+.+..+..+.......
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998888877777777643 334444444444433334
Q ss_pred chhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1131 DASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1131 ~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
. .....+++.+...|.+|+.+|..+|+|++|+++.++++..+..-.
T Consensus 439 ~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~ 484 (508)
T KOG1840|consen 439 M-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRL 484 (508)
T ss_pred H-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcC
Confidence 4 556788889999999999999999999999999999999988876
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-20 Score=232.52 Aligned_cols=251 Identities=24% Similarity=0.269 Sum_probs=225.7
Q ss_pred cCCCCCChhHHHHhhhccchhhhcc-cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 000191 864 DMDSPSPFRKIDVVSLVPVHKQAAC-SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLA 942 (1888)
Q Consensus 864 ~fdsa~~F~~eDIlnl~PvvK~~~~-~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA 942 (1888)
+|+.+.+.....+-. +.+.... ....+..+..+|..|..+++|.+|+.+|++||.+.+.++|.+|+.++.++.+||
T Consensus 214 ~~e~A~~l~k~Al~~---l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa 290 (508)
T KOG1840|consen 214 RLEKAEPLCKQALRI---LEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLA 290 (508)
T ss_pred cHHHHHHHHHHHHHH---HHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 466666666554322 1122222 223344455689999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 000191 943 VVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATY 1022 (1888)
Q Consensus 943 ~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~ 1022 (1888)
.+|+.+|+|++|..++++|+.|+++.+|..++.+...+.+++.++..++++++|+.+|++++.++....|.+|+.++.++
T Consensus 291 ~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~ 370 (508)
T KOG1840|consen 291 VLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIY 370 (508)
T ss_pred HHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHH
Q 000191 1023 INVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRT 1102 (1888)
Q Consensus 1023 ~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~t 1102 (1888)
.|||.+|..+|+|++|.++|++|+.+.++..|..+..+...+.+||..|.+++++.+|.+.|.++..|. ...|++|+.+
T Consensus 371 ~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~-~~~g~~~~~~ 449 (508)
T KOG1840|consen 371 ANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM-KLCGPDHPDV 449 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH-HHhCCCCCch
Confidence 999999999999999999999999999999999899999999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 000191 1103 QDAAAWLEYFESKAFE 1118 (1888)
Q Consensus 1103 l~a~~~La~L~qka~e 1118 (1888)
...+.+|+.++...+.
T Consensus 450 ~~~~~nL~~~Y~~~g~ 465 (508)
T KOG1840|consen 450 TYTYLNLAALYRAQGN 465 (508)
T ss_pred HHHHHHHHHHHHHccc
Confidence 9999999977654433
|
|
| >PF15044 CLU_N: Mitochondrial function, CLU-N-term | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-22 Score=190.70 Aligned_cols=71 Identities=48% Similarity=0.804 Sum_probs=67.9
Q ss_pred cChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc----CceeEEeccCCCHHHHHHHHHHHHHHH
Q 000191 43 ISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK----PCVLSLTEEDFDEEGAAAHVRRVLDIV 115 (1888)
Q Consensus 43 is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk----~~~L~lVeepYter~Ar~Hvrrvrdll 115 (1888)
+++|+|+||||+|+++++||+||||+|.| +|++||||+||++++ ||+|+|||+|||+|+||+||+|+||||
T Consensus 2 ~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~--~g~~L~~~~el~~i~~~~~~~~L~lve~pYt~r~a~~Hv~r~rdli 76 (76)
T PF15044_consen 2 SPTDTVQDVRQVLAESPETCYLTNFSLEH--NGQRLDDFVELSEIEGIKDGCVLELVEEPYTEREAREHVRRVRDLI 76 (76)
T ss_pred ChhhHHHHHHHHHHhCccccceeEEEEEE--CCCccCCchhhhhhhCCCCCcEEEEEecCCCHHHHHHHHHHHHhhC
Confidence 46699999999999999999999999997 999999999999987 699999999999999999999999986
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-19 Score=216.91 Aligned_cols=240 Identities=18% Similarity=0.129 Sum_probs=205.6
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000191 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 969 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~l 969 (1888)
...+..++++|.+|-..+.|++|+..|.+|+.+ .|..+.++.+||.+|+.+|+.+-|+..|++||++
T Consensus 249 P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~----- 315 (966)
T KOG4626|consen 249 PNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL----- 315 (966)
T ss_pred CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--------CCcchhhccceEEEEeccccHHHHHHHHHHHHhc-----
Confidence 334677999999999999999999999999987 5777889999999999999999999999999987
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 970 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
.|....+|+|||..+...|+..+|..+|.+||.++ |..+.+++|||.+|.++|.+++|..+|++|+++.
T Consensus 316 ---~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~--------p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~ 384 (966)
T KOG4626|consen 316 ---QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC--------PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF 384 (966)
T ss_pred ---CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC
Confidence 58888999999999999999999999999999974 3446778999999999999999999999999985
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHhcC
Q 000191 1050 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES--KAFEQQEAARNGT 1127 (1888)
Q Consensus 1050 ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~q--ka~e~AeAl~~~~ 1127 (1888)
+..+.++.+||.+|.++|++++|+.+|++|+.| .+...+++.+++..+. +.+..+.+.+..+
T Consensus 385 --------p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rA 448 (966)
T KOG4626|consen 385 --------PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMGNTYKEMGDVSAAIQCYTRA 448 (966)
T ss_pred --------hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcchHHHHhhhHHHHHHHHHHH
Confidence 668899999999999999999999999999977 3455667776664444 3444443333322
Q ss_pred CCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1128 RKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1128 ~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
. .-.+..++...+||.+|...|+..+|+..|+.+++++...-
T Consensus 449 I--------~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 449 I--------QINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFP 490 (966)
T ss_pred H--------hcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCc
Confidence 2 22357889999999999999999999999999999987754
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.8e-19 Score=212.11 Aligned_cols=240 Identities=19% Similarity=0.156 Sum_probs=208.3
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.|..+-++|..+..+|+...|+.+|++|+.+ +|..+.+|.+||.+|..++.|+.|+..|++|+.+
T Consensus 217 fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--------dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l------- 281 (966)
T KOG4626|consen 217 FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--------DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL------- 281 (966)
T ss_pred eeeeehhcchHHhhcchHHHHHHHHHHhhcC--------CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc-------
Confidence 3555667788999999999999999999987 6788899999999999999999999999999987
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
.|..+.++.|||.+|+.+|..+.|+..|++|+++ .|....+|+|||..+...|+..+|.++|.+||.++
T Consensus 282 -rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-- 350 (966)
T KOG4626|consen 282 -RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-- 350 (966)
T ss_pred -CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC--
Confidence 5778899999999999999999999999999986 47778899999999999999999999999999986
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 000191 1052 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD 1131 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~ 1131 (1888)
+..+.+.++||.+|..+|.+++|..+|++|++++ +....+..+|+.++++++...+++......
T Consensus 351 ------p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~--------p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykea-- 414 (966)
T KOG4626|consen 351 ------PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF--------PEFAAAHNNLASIYKQQGNLDDAIMCYKEA-- 414 (966)
T ss_pred ------CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC--------hhhhhhhhhHHHHHHhcccHHHHHHHHHHH--
Confidence 4567889999999999999999999999999875 344556677887877777766665432221
Q ss_pred hhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1132 ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1132 ~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
..-.+..++.|.++|.+|..+|+...|++.|.+|+.+.....
T Consensus 415 ----lrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~A 456 (966)
T KOG4626|consen 415 ----LRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFA 456 (966)
T ss_pred ----HhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHH
Confidence 122347788999999999999999999999999999987764
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.6e-15 Score=190.64 Aligned_cols=247 Identities=14% Similarity=0.061 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000191 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 969 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~l 969 (1888)
...+..++.+|..++.+|++++|+.+|++++.+ +|....+|..+|.+|..+|++++|+.++++++.+
T Consensus 328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~----- 394 (615)
T TIGR00990 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL----- 394 (615)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----
Confidence 345667888899999999999999999999986 4666789999999999999999999999999886
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 970 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
+|....+|+++|.+|+.+|++++|+.+|++++.+ .|.....+.++|.++..+|++++|+.+|+++++..
T Consensus 395 ---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 395 ---NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3555678999999999999999999999999985 35566778999999999999999999999999763
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHhcC
Q 000191 1050 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF--ESKAFEQQEAARNGT 1127 (1888)
Q Consensus 1050 ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L--~qka~e~AeAl~~~~ 1127 (1888)
+....++..+|.+|..+|++++|+..|++|+.+.... ...+............+ ..+.++.+..+....
T Consensus 464 --------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~-~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kA 534 (615)
T TIGR00990 464 --------PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET-KPMYMNVLPLINKALALFQWKQDFIEAENLCEKA 534 (615)
T ss_pred --------CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc-ccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3345678889999999999999999999999774321 11111211111111111 124444444443322
Q ss_pred CCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1128 RKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1128 ~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
.... +....++..+|.+|..+|++++|+.+|++++++..+..
T Consensus 535 l~l~--------p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 535 LIID--------PECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred HhcC--------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 1111 12234688899999999999999999999999987644
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-13 Score=179.43 Aligned_cols=241 Identities=16% Similarity=0.127 Sum_probs=176.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHH--------------
Q 000191 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKA-------------- 961 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKA-------------- 961 (1888)
++++|.+|+..|++++|+..+.+|+.+ .|....++..+|.+|..+|++++|+..+.++
T Consensus 163 ~~n~a~~~~~l~~~~~Ai~~~~~al~l--------~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~ 234 (615)
T TIGR00990 163 YSNRAACHNALGDWEKVVEDTTAALEL--------DPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQA 234 (615)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 566788888889999999999998876 4566678888999999999988887544332
Q ss_pred -------------------------------------------------------------------------------H
Q 000191 962 -------------------------------------------------------------------------------L 962 (1888)
Q Consensus 962 -------------------------------------------------------------------------------L 962 (1888)
+
T Consensus 235 ~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~ 314 (615)
T TIGR00990 235 VERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAA 314 (615)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHH
Confidence 2
Q ss_pred HHHHHhcC--CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 000191 963 DINERELG--LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALR 1040 (1888)
Q Consensus 963 ~I~Er~lG--~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle 1040 (1888)
..+++.+. ...+....++.++|.++..+|++++|+.+|++++.+ +|....++.++|.+|..+|++++|+.
T Consensus 315 ~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 315 RAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 22222221 124556677888999999999999999999999875 35667788899999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--HHHHHHH
Q 000191 1041 YLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY--FESKAFE 1118 (1888)
Q Consensus 1041 ~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~--L~qka~e 1118 (1888)
+|++++++. + ....+++.+|.+|..+|++++|+.+|++++.+ .+++... ...++. ...+.++
T Consensus 387 ~~~~al~~~-----p---~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l-----~P~~~~~---~~~la~~~~~~g~~~ 450 (615)
T TIGR00990 387 DFDKALKLN-----S---EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL-----DPDFIFS---HIQLGVTQYKEGSIA 450 (615)
T ss_pred HHHHHHHhC-----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CccCHHH---HHHHHHHHHHCCCHH
Confidence 999998762 2 33567888999999999999999999999865 3554433 223333 3333444
Q ss_pred HHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhccc
Q 000191 1119 QQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 1176 (1888)
Q Consensus 1119 ~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi 1176 (1888)
.+......... ..+...+++..+|.++..+|++++|+.+|++++++....
T Consensus 451 eA~~~~~~al~--------~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 451 SSMATFRRCKK--------NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred HHHHHHHHHHH--------hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 44433322111 122345678999999999999999999999999987653
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.2e-14 Score=164.57 Aligned_cols=276 Identities=15% Similarity=0.119 Sum_probs=208.3
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
.+...|.++|..|+..++|++|++|..--|.+.+.+ | +...-+.+..+||.++-.+|.|++|+.+..+-|.+++++
T Consensus 53 tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~l-g-dklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areL-- 128 (639)
T KOG1130|consen 53 TLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLL-G-DKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAREL-- 128 (639)
T ss_pred HHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHh-c-chhccccccccccchhhhhcccchHHHHHHHHhHHHHHH--
Confidence 345677888999999999999999998888776554 3 333446788999999999999999999999999998875
Q ss_pred CCChhhHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 000191 971 LDHPDTMKSYGDLAVFYYRLQH--------------------TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE 1030 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGd--------------------yeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~ 1030 (1888)
.|...-..+|+|||.+|+..|+ ++.|.++|..-|++.++. | +......+|-|||..|.
T Consensus 129 gDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~l-g-Dr~aqGRa~GnLGNTyY 206 (639)
T KOG1130|consen 129 GDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKL-G-DRLAQGRAYGNLGNTYY 206 (639)
T ss_pred hHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHh-h-hHHhhcchhcccCceee
Confidence 2445567899999999999876 456777888777777664 2 33445678999999999
Q ss_pred HCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 000191 1031 GLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE 1110 (1888)
Q Consensus 1031 ~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La 1110 (1888)
-+|+|++|+.+.+.-|.+.++. | +....-.++.+||.+|.-+|+|+.|+++|+.++.+..+. |...... ++...|+
T Consensus 207 lLGdf~~ai~~H~~RL~ia~ef-G-DrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel-g~r~vEA-QscYSLg 282 (639)
T KOG1130|consen 207 LLGDFDQAIHFHKLRLEIAQEF-G-DRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL-GNRTVEA-QSCYSLG 282 (639)
T ss_pred eeccHHHHHHHHHHHHHHHHHh-h-hHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh-cchhHHH-HHHHHhh
Confidence 9999999999999999998776 3 344556789999999999999999999999999888764 4332222 2222222
Q ss_pred --HHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhccccC
Q 000191 1111 --YFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQ 1178 (1888)
Q Consensus 1111 --~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~q 1178 (1888)
|...+.++.+..+.+.-+ ..+....+.......++.||..|...|..++|+.+.++++++...+++
T Consensus 283 Ntytll~e~~kAI~Yh~rHL--aIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D 350 (639)
T KOG1130|consen 283 NTYTLLKEVQKAITYHQRHL--AIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVND 350 (639)
T ss_pred hHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCC
Confidence 223333443333322221 112222333455678999999999999999999999999999888773
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.9e-14 Score=163.09 Aligned_cols=240 Identities=17% Similarity=0.218 Sum_probs=192.7
Q ss_pred hhHHHHHHHHHHHhhh-hhhcccccCCCCCChhHHHHhhhccchhhhcccHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000191 841 VRKFAILRGLCHKVGI-ELVSRDFDMDSPSPFRKIDVVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKA 919 (1888)
Q Consensus 841 l~klsLLReLc~klGI-qL~aR~Y~fdsa~~F~~eDIlnl~PvvK~~~~~s~~A~~LlelG~~~l~qGd~dEAie~~eeA 919 (1888)
...+.+|.+|+.++|- ++..++| ..+..|...||. +.+........|+..-++|.++-..|.|++|+.++.+-
T Consensus 48 TeDl~tLSAIYsQLGNAyfyL~DY--~kAl~yH~hDlt----lar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rh 121 (639)
T KOG1130|consen 48 TEDLSTLSAIYSQLGNAYFYLKDY--EKALKYHTHDLT----LARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRH 121 (639)
T ss_pred chHHHHHHHHHHHhcchhhhHhhH--HHHHhhhhhhHH----HHHHhcchhccccccccccchhhhhcccchHHHHHHHH
Confidence 3466788889888883 3344444 555666666652 23444555566777778899999999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 000191 920 LAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD--------------------FNQATIYQQKALDINERELGLDHPDTMKS 979 (1888)
Q Consensus 920 L~l~eqi~G~dhpe~A~ay~~LA~ly~~lGd--------------------yeeAl~~~eKAL~I~Er~lG~Dhp~ta~a 979 (1888)
|.+.+++ .+...-+++|++||.+|...|+ ++.|.++|+.-|.+.++. .|......+
T Consensus 122 Ld~areL--gDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~l--gDr~aqGRa 197 (639)
T KOG1130|consen 122 LDFAREL--GDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKL--GDRLAQGRA 197 (639)
T ss_pred hHHHHHH--hHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHh--hhHHhhcch
Confidence 9998886 2344457899999999999875 456777888888887764 345556789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHH
Q 000191 980 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ 1059 (1888)
Q Consensus 980 y~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~ 1059 (1888)
|.|||..|+.+|+|+.|+.+.+.-|.|.+.. | +....-.++.|||.++.-+|+++.|+++|+.++.+..++ .+...
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef-G-DrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel--g~r~v 273 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF-G-DRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL--GNRTV 273 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHh-h-hHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh--cchhH
Confidence 9999999999999999999999999988774 4 234456789999999999999999999999999998877 34556
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000191 1060 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 1094 (1888)
Q Consensus 1060 tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~ 1094 (1888)
-+...+.||..|....++++|+.|.++-+.|.+..
T Consensus 274 EAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL 308 (639)
T KOG1130|consen 274 EAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL 308 (639)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888999999999999999999999999998765
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.4e-13 Score=168.74 Aligned_cols=246 Identities=11% Similarity=0.046 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHH--------------------------HHHhcCCCChhHHHHHHHHHHHHHh
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAK--------------------------LVAVCGPYHRMTAGAYSLLAVVLYH 947 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l--------------------------~eqi~G~dhpe~A~ay~~LA~ly~~ 947 (1888)
..+.++|+.|++.++|++|..+|+.+-.+ +.+.+-...+.-..+|..+|.+|..
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSL 433 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSL 433 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhh
Confidence 56778899999999999999999887653 1111112345556789999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 000191 948 TGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAM 1027 (1888)
Q Consensus 948 lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~ 1027 (1888)
+++++.|+..+++|+++ +|..+.+|..+|.=+..+.+||.|..+|+.||.+ .|..-.+|+.||.
T Consensus 434 Qkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--------~~rhYnAwYGlG~ 497 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--------DPRHYNAWYGLGT 497 (638)
T ss_pred hhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--------CchhhHHHHhhhh
Confidence 99999999999999997 5778899999999999999999999999999975 4666789999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 000191 1028 MEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAA 1107 (1888)
Q Consensus 1028 iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~ 1107 (1888)
+|.++++++.|+-+|++|+++. |....++..+|.+|.++|+.++|+.+|++|+. +.+.++..+.-..
T Consensus 498 vy~Kqek~e~Ae~~fqkA~~IN--------P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~-----ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 498 VYLKQEKLEFAEFHFQKAVEIN--------PSNSVILCHIGRIQHQLKRKDKALQLYEKAIH-----LDPKNPLCKYHRA 564 (638)
T ss_pred heeccchhhHHHHHHHhhhcCC--------ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh-----cCCCCchhHHHHH
Confidence 9999999999999999999985 44455666789999999999999999999984 4666665544443
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1108 WLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1108 ~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
.+.... ..++.+....+.. ....+.-+.++..||.+|...|+++.|+..|--|+.+..+-.
T Consensus 565 ~il~~~-~~~~eal~~LEeL--------k~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 565 SILFSL-GRYVEALQELEEL--------KELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHhh-cchHHHHHHHHHH--------HHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 332222 1222221111111 111224456799999999999999999999999998877644
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-11 Score=151.42 Aligned_cols=242 Identities=12% Similarity=0.042 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+...|..|..+...|++++|+.+|++++.. +|....++..+|.+|..+|++++|+.++++++... ...
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~ 102 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKV--------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP----DLT 102 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC----CCC
Confidence 344555667777778888888888887765 34445677778888888888888888777766520 011
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
.......+..||.+|...|++++|+.+|.+++.. ++....++..++.+|...|++++|+.+++++++....
T Consensus 103 ~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~- 173 (389)
T PRK11788 103 REQRLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD- 173 (389)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC-
Confidence 1223356777788888888888888887777653 2344556777777777788888888777776654211
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCC
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE--YFESKAFEQQEAARNGTRKP 1130 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La--~L~qka~e~AeAl~~~~~~~ 1130 (1888)
......+..+..+|.++...|++++|+.++++++++ .+++.. +...++ +...+..+.+.........
T Consensus 174 --~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~~~~- 242 (389)
T PRK11788 174 --SLRVEIAHFYCELAQQALARGDLDAARALLKKALAA-----DPQCVR---ASILLGDLALAQGDYAAAIEALERVEE- 242 (389)
T ss_pred --cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH-----CcCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 111123445566777777778888888777777654 233222 222222 2233333333332222110
Q ss_pred chhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1131 DASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 1172 (1888)
Q Consensus 1131 ~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL 1172 (1888)
.+......++..++.+|...|++++|+.++++++++
T Consensus 243 ------~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 243 ------QDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred ------HChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 011123345666777777777777777777777665
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.5e-11 Score=132.79 Aligned_cols=170 Identities=22% Similarity=0.237 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
..+..++.+|..++..|++++|+.++++++.. +|....++..+|.+|..+|++++|+.++++++.+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------ 94 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL------ 94 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------
Confidence 34677888999999999999999999999875 3555678999999999999999999999999986
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000191 971 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
.+.....+.++|.+|...|++++|+.+|++++.. ..++.....+.++|.+|...|++++|+.+|+++++..
T Consensus 95 --~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 165 (234)
T TIGR02521 95 --NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED------PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID- 165 (234)
T ss_pred --CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc------cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 2344568899999999999999999999999873 2234456678889999999999999999999999863
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1051 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
++ ....+..+|.++...|++++|+.++++++.+
T Consensus 166 ----~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 166 ----PQ---RPESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred ----cC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22 2456778999999999999999999998876
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.9e-11 Score=148.33 Aligned_cols=242 Identities=14% Similarity=0.059 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...++.+|..+..+|++++|+.++++++... .........++..||.+|..+|++++|+.++++++..
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-------- 136 (389)
T PRK11788 69 VELHLALGNLFRRRGEVDRAIRIHQNLLSRP----DLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE-------- 136 (389)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------
Confidence 4567788999999999999999999887631 0111233468899999999999999999999998764
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
++....++..|+.+|...|++++|+.++++++.... ...+......+.++|.++...|++++|+.+|+++++..
T Consensus 137 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--- 210 (389)
T PRK11788 137 GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG---DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD--- 210 (389)
T ss_pred CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC---
Confidence 345567889999999999999999999999876421 11122345567889999999999999999999999863
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCC
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE--YFESKAFEQQEAARNGTRKP 1130 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La--~L~qka~e~AeAl~~~~~~~ 1130 (1888)
+ ....++..+|.+|...|++++|+.++++++.. ++.+. ......+. +...+..+.+..........
T Consensus 211 --p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~--~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 211 --P---QCVRASILLGDLALAQGDYAAAIEALERVEEQ-----DPEYL--SEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred --c---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----ChhhH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 23457788999999999999999999998864 22221 12222222 33334444443332221110
Q ss_pred chhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 000191 1131 DASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 1173 (1888)
Q Consensus 1131 ~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~ 1173 (1888)
.+ .. ..+..++.++...|++++|+.+++++++..
T Consensus 279 -----~p---~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~~ 312 (389)
T PRK11788 279 -----YP---GA-DLLLALAQLLEEQEGPEAAQALLREQLRRH 312 (389)
T ss_pred -----CC---Cc-hHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 11 11 235789999999999999999999998874
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.1e-11 Score=157.67 Aligned_cols=247 Identities=13% Similarity=0.001 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--------
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI-------- 964 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I-------- 964 (1888)
...++.+|..+...|++++|+..|++++.+ .|....++..+|.+|..+|++++|+..+++++..
T Consensus 110 ~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~ 181 (656)
T PRK15174 110 PEDVLLVASVLLKSKQYATVADLAEQAWLA--------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMI 181 (656)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHH
Confidence 344677788899999999999999999876 3455567788888888888888888877765432
Q ss_pred ------------------HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 000191 965 ------------------NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVA 1026 (1888)
Q Consensus 965 ------------------~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA 1026 (1888)
+++.+..+.......+..++.++...|++++|+..|.+++.+ +|....++.++|
T Consensus 182 ~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~Lg 253 (656)
T PRK15174 182 ATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--------GLDGAALRRSLG 253 (656)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHH
Confidence 111111111111122344566777777788887777777763 355567788899
Q ss_pred HHHHHCCCHHH----HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHH
Q 000191 1027 MMEEGLGNVHV----ALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRT 1102 (1888)
Q Consensus 1027 ~iy~~lG~yee----Ale~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~t 1102 (1888)
.+|..+|++++ |+.+|++++++. |....++.++|.+|...|++++|+.++++++++ .+++...
T Consensus 254 ~~l~~~G~~~eA~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l-----~P~~~~a 320 (656)
T PRK15174 254 LAYYQSGRSREAKLQAAEHWRHALQFN--------SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT-----HPDLPYV 320 (656)
T ss_pred HHHHHcCCchhhHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHH
Confidence 99999999986 788898888763 345677888999999999999999999998864 5666654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1103 QDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1103 l~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
...+. ..+...+.++.+.......... .+.....+..+|.++...|++++|+.+|++++++.....
T Consensus 321 ~~~La-~~l~~~G~~~eA~~~l~~al~~--------~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 321 RAMYA-RALRQVGQYTAASDEFVQLARE--------KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHH-HHHHHCCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 33322 2233344444444333221111 112223566678899999999999999999999977754
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.8e-11 Score=140.51 Aligned_cols=226 Identities=12% Similarity=0.017 Sum_probs=161.1
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 000191 907 GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVF 986 (1888)
Q Consensus 907 Gd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~l 986 (1888)
+..+.++..+.++|.... .+....+..|+.+|.+|..+|++++|+..|++|+.+ .|....+|+++|.+
T Consensus 40 ~~~e~~i~~~~~~l~~~~----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~ 107 (296)
T PRK11189 40 LQQEVILARLNQILASRD----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIY 107 (296)
T ss_pred hHHHHHHHHHHHHHcccc----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHH
Confidence 355667777777775421 233455789999999999999999999999999986 46678899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 000191 987 YYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHA 1066 (1888)
Q Consensus 987 y~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~n 1066 (1888)
|...|++++|+..|.+++++ .|+...++.++|.+|...|++++|+..|++++++. ++++.. ..+
T Consensus 108 ~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-----P~~~~~-~~~-- 171 (296)
T PRK11189 108 LTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-----PNDPYR-ALW-- 171 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHH-HHH--
Confidence 99999999999999999986 35556789999999999999999999999999864 444421 112
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCchhhhhcCCccHHH
Q 000191 1067 IAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGT--RKPDASIASKGHLSVSD 1144 (1888)
Q Consensus 1067 LA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~--~~~~~~~as~~~~svae 1144 (1888)
..++...+++++|+..+.++... +.++.... .+.++..+....++++.... ....... .+...+
T Consensus 172 -~~l~~~~~~~~~A~~~l~~~~~~----~~~~~~~~-----~~~~~~lg~~~~~~~~~~~~~~~~~~~~l----~~~~~e 237 (296)
T PRK11189 172 -LYLAESKLDPKQAKENLKQRYEK----LDKEQWGW-----NIVEFYLGKISEETLMERLKAGATDNTEL----AERLCE 237 (296)
T ss_pred -HHHHHccCCHHHHHHHHHHHHhh----CCccccHH-----HHHHHHccCCCHHHHHHHHHhcCCCcHHH----HHHHHH
Confidence 22345578899999999776532 12222111 12222222222222221111 1111111 124567
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000191 1145 LLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1145 lL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
.|+++|.+|..+|++++|+.+|++++++..
T Consensus 238 a~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 238 TYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 899999999999999999999999998763
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.8e-11 Score=154.15 Aligned_cols=244 Identities=12% Similarity=0.036 Sum_probs=167.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...++.+|...+..|++++|+..|++++.+ +|....++..+|.+|..+|++++|+..+++++.+
T Consensus 76 ~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--------~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l-------- 139 (656)
T PRK15174 76 RDLLRRWVISPLASSQPDAVLQVVNKLLAV--------NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA-------- 139 (656)
T ss_pred hhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 445677788888999999999999999987 5666778999999999999999999999999986
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--------------------------HHhcCCCChhHHHHHHHHH
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL--------------------------HLTCGPSHPNTAATYINVA 1026 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~--------------------------~ki~G~dhP~~a~a~~NLA 1026 (1888)
.|....++..+|.++...|++++|+..+++++... ......+.+.....+..++
T Consensus 140 ~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~ 219 (656)
T PRK15174 140 FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAV 219 (656)
T ss_pred CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHH
Confidence 35556678888888999999999888887665421 0000000001111223446
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHH----HHHHHHHHHHHHHHhcCCCCHHH
Q 000191 1027 MMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPL----SVQHEQTTLQILRAKLGPDDLRT 1102 (1888)
Q Consensus 1027 ~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdyde----Ale~lqkALeI~kk~LG~dh~~t 1102 (1888)
.+|...|++++|+..|+++++.. +....+++++|.+|..+|++++ |+.++++++++ .+++...
T Consensus 220 ~~l~~~g~~~eA~~~~~~al~~~--------p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-----~P~~~~a 286 (656)
T PRK15174 220 DTLCAVGKYQEAIQTGESALARG--------LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-----NSDNVRI 286 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-----CCCCHHH
Confidence 66777777777777777777642 2345677788999999999885 78888877754 3565544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000191 1103 QDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1103 l~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
...+..+ ++..+..+.+.......... .+....++..+|.+|..+|++++|+..|++++....
T Consensus 287 ~~~lg~~-l~~~g~~~eA~~~l~~al~l--------~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P 349 (656)
T PRK15174 287 VTLYADA-LIRTGQNEKAIPLLQQSLAT--------HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG 349 (656)
T ss_pred HHHHHHH-HHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 4333322 23333444443332221111 123345678899999999999999999999887643
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-10 Score=154.92 Aligned_cols=183 Identities=21% Similarity=0.226 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-------
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI------- 964 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I------- 964 (1888)
....++..|..++.+|++++|+..+++++.. +|....+++.+|.+|..+|++++|+..+++++..
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 92 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQK--------DPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQV 92 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhh
Confidence 4566788899999999999999999999976 4566679999999999999999999999988753
Q ss_pred --------------------HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 000191 965 --------------------NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 1024 (1888)
Q Consensus 965 --------------------~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~N 1024 (1888)
+++....+.+.....+..+|.+|...|++++|+.+|++++.. +|....++..
T Consensus 93 ~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~ 164 (899)
T TIGR02917 93 LPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAI--------DPRSLYAKLG 164 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhhHHH
Confidence 111112244556677888999999999999999999998864 2344556788
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 000191 1025 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQ 1103 (1888)
Q Consensus 1025 LA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl 1103 (1888)
+|.++...|++++|+.+++++++.. + ....++..+|.++...|++++|+..+++++.+ .+.+....
T Consensus 165 la~~~~~~~~~~~A~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-----~p~~~~~~ 230 (899)
T TIGR02917 165 LAQLALAENRFDEARALIDEVLTAD-----P---GNVDALLLKGDLLLSLGNIELALAAYRKAIAL-----RPNNPAVL 230 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-----C---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCHHHH
Confidence 8999999999999999999887752 2 23456777888999999999999999888754 45554443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.32 E-value=8e-11 Score=131.78 Aligned_cols=168 Identities=20% Similarity=0.159 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000191 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 969 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~l 969 (1888)
...+...+++|.-|+.+|++..|..-+++||+. +|....++..+|.+|..+|+.+.|.+.|++|+.+
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl----- 98 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL----- 98 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-----
Confidence 344778889999999999999999999999987 6777889999999999999999999999999997
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 970 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
+|.....++|.|.+++.+|+|++|..+|.+|+. .+..+....++-|+|.|-.+.|+++.|..+|+++|++.
T Consensus 99 ---~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~------~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d 169 (250)
T COG3063 99 ---APNNGDVLNNYGAFLCAQGRPEEAMQQFERALA------DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD 169 (250)
T ss_pred ---CCCccchhhhhhHHHHhCCChHHHHHHHHHHHh------CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence 577888999999999999999999999999997 36666778899999999999999999999999999985
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000191 1050 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 1087 (1888)
Q Consensus 1050 ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkA 1087 (1888)
++.......++..+...|+|..|..+++.-
T Consensus 170 --------p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~ 199 (250)
T COG3063 170 --------PQFPPALLELARLHYKAGDYAPARLYLERY 199 (250)
T ss_pred --------cCCChHHHHHHHHHHhcccchHHHHHHHHH
Confidence 333455667899999999999998887643
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-10 Score=162.82 Aligned_cols=241 Identities=14% Similarity=0.085 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 973 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh 973 (1888)
..+..+|..+...|++++|+.+|++++.+ +|....+++.||.+|..+|++++|+..+++++.. +
T Consensus 462 ~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--------~ 525 (1157)
T PRK11447 462 DRLAQQAEALENQGKWAQAAELQRQRLAL--------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--------K 525 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------C
Confidence 45667899999999999999999999987 4555668899999999999999999999999875 3
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------------------------HHHHHhcCCCCh
Q 000191 974 PDTMKSYGDLAVFYYRLQHTELALKYVKRAL-------------------------------------YLLHLTCGPSHP 1016 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~lGdyeeALey~~kAL-------------------------------------eL~~ki~G~dhP 1016 (1888)
|.....++.+|.++...+++++|+.+++++. .+++ .+|
T Consensus 526 P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~-----~~p 600 (1157)
T PRK11447 526 PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR-----QQP 600 (1157)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH-----hCC
Confidence 4445566777888888888888888776531 1111 234
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 000191 1017 NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 1096 (1888)
Q Consensus 1017 ~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG 1096 (1888)
.....+.++|.+|..+|++++|+.+|+++++.. + ....++..+|.+|...|++++|+.+++++++. .
T Consensus 601 ~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-----P---~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-----~ 667 (1157)
T PRK11447 601 PSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-----P---GNADARLGLIEVDIAQGDLAAARAQLAKLPAT-----A 667 (1157)
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-----C
Confidence 445567889999999999999999999999863 3 34567889999999999999999999977643 4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000191 1097 PDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 1171 (1888)
Q Consensus 1097 ~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALe 1171 (1888)
+++........+ .+...+..+.+..+.......... .......+.++..+|.++..+|++++|+.+|++|+.
T Consensus 668 p~~~~~~~~la~-~~~~~g~~~eA~~~~~~al~~~~~--~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 668 NDSLNTQRRVAL-AWAALGDTAAAQRTFNRLIPQAKS--QPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CCChHHHHHHHH-HHHhCCCHHHHHHHHHHHhhhCcc--CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 556554443333 233444555555444432211100 000112345677789999999999999999999975
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-10 Score=137.89 Aligned_cols=216 Identities=16% Similarity=0.161 Sum_probs=166.3
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 000191 908 KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFY 987 (1888)
Q Consensus 908 d~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly 987 (1888)
++.+|..|...|+.+ +...+.++.+-|.+.+..|++++|.++|++||.- +.....+++|+|+.+
T Consensus 471 ~~~~aqqyad~aln~--------dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n--------dasc~ealfniglt~ 534 (840)
T KOG2003|consen 471 DFADAQQYADIALNI--------DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN--------DASCTEALFNIGLTA 534 (840)
T ss_pred chhHHHHHHHHHhcc--------cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC--------chHHHHHHHHhcccH
Confidence 578888888888776 3455678888999999999999999999999863 456778999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 000191 988 YRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAI 1067 (1888)
Q Consensus 988 ~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nL 1067 (1888)
..+|++++|+.+|.+.-.++.. .+.++..+|.+|..+.+..+|+++|-++..+. ++.| .++..|
T Consensus 535 e~~~~ldeald~f~klh~il~n--------n~evl~qianiye~led~aqaie~~~q~~sli-----p~dp---~ilskl 598 (840)
T KOG2003|consen 535 EALGNLDEALDCFLKLHAILLN--------NAEVLVQIANIYELLEDPAQAIELLMQANSLI-----PNDP---AILSKL 598 (840)
T ss_pred HHhcCHHHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC-----CCCH---HHHHHH
Confidence 9999999999999987776532 46788899999999999999999999887664 4444 457788
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHH
Q 000191 1068 AIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE--YFESKAFEQQEAARNGTRKPDASIASKGHLSVSDL 1145 (1888)
Q Consensus 1068 A~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La--~L~qka~e~AeAl~~~~~~~~~~~as~~~~svael 1145 (1888)
|.+|-+.|+-.+|.+++-.++..| +..++...||+ |+..+-.+.+..+.+.+ ..-.+.....
T Consensus 599 ~dlydqegdksqafq~~ydsyryf--------p~nie~iewl~ayyidtqf~ekai~y~eka--------aliqp~~~kw 662 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRYF--------PCNIETIEWLAAYYIDTQFSEKAINYFEKA--------ALIQPNQSKW 662 (840)
T ss_pred HHHhhcccchhhhhhhhhhccccc--------CcchHHHHHHHHHHHhhHHHHHHHHHHHHH--------HhcCccHHHH
Confidence 999999999999999887777554 33455667776 33444444444443322 2223455566
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 000191 1146 LDYINPSHDTKGRNVSTLKRKTYVAK 1171 (1888)
Q Consensus 1146 L~~Lg~~y~~qGdyeEAleyyeKALe 1171 (1888)
..+++.++++.|+|.+|+..|+...+
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 78899999999999999999976543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3e-10 Score=158.46 Aligned_cols=172 Identities=17% Similarity=0.047 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhH-----------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMT-----------AGAYSLLAVVLYHTGDFNQATIYQQKA 961 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~-----------A~ay~~LA~ly~~lGdyeeAl~~~eKA 961 (1888)
...++.+|.+++.+|++++|+.+|++++.+. +++... ...+..+|.++...|++++|+.+|+++
T Consensus 303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~-----p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~A 377 (1157)
T PRK11447 303 SEALGALGQAYSQQGDRARAVAQFEKALALD-----PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQA 377 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5667888999999999999999999999863 222211 112345688999999999999999999
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH-----------------------
Q 000191 962 LDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT----------------------- 1018 (1888)
Q Consensus 962 L~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~----------------------- 1018 (1888)
+.+ +|....++.+||.+|..+|++++|+++|++++.+. +++...
T Consensus 378 l~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-----p~~~~a~~~L~~l~~~~~~~~A~~~l~~l 444 (1157)
T PRK11447 378 RQV--------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-----PGNTNAVRGLANLYRQQSPEKALAFIASL 444 (1157)
T ss_pred HHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 987 35556788999999999999999999999999752 111110
Q ss_pred ----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHH
Q 000191 1019 ----------------AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQ 1082 (1888)
Q Consensus 1019 ----------------a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle 1082 (1888)
...+..+|.++...|++++|+.+|++++++. +++ ..+++.+|.+|..+|++++|+.
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-----P~~---~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 445 SASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-----PGS---VWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHcCCHHHHHH
Confidence 1234456778888999999999999999874 333 4567889999999999999999
Q ss_pred HHHHHHHH
Q 000191 1083 HEQTTLQI 1090 (1888)
Q Consensus 1083 ~lqkALeI 1090 (1888)
.++++++.
T Consensus 517 ~l~~al~~ 524 (1157)
T PRK11447 517 LMRRLAQQ 524 (1157)
T ss_pred HHHHHHHc
Confidence 99998753
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-10 Score=140.03 Aligned_cols=246 Identities=15% Similarity=0.070 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
..+..|+..|..++-.|++..|.+.|.+++.+ ++.....|..+|.+|....+.++....|.+|..+
T Consensus 324 ~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l--------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l------ 389 (606)
T KOG0547|consen 324 YMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL--------DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL------ 389 (606)
T ss_pred HHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc--------CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc------
Confidence 44788888999999999999999999999987 3444445889999999999999999999999887
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000191 971 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
+|.....|++-|.+++-+++|++|+.-|++|+.+ .|..+..|..++.++.++++++++...|+++.+.+
T Consensus 390 --dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF- 458 (606)
T KOG0547|consen 390 --DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF- 458 (606)
T ss_pred --CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 5667788999999999999999999999999986 47788999999999999999999999999998765
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000191 1051 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPD-DLRTQDAAAWLEYFESKAFEQQEAARNGTRK 1129 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~d-h~~tl~a~~~La~L~qka~e~AeAl~~~~~~ 1129 (1888)
|....+|...|+++..+++|++|++.|..|+.+-....+.. ....+.....+..-..+....+..+...+..
T Consensus 459 -------P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e 531 (606)
T KOG0547|consen 459 -------PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIE 531 (606)
T ss_pred -------CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHc
Confidence 44556777889999999999999999999997644311110 1111111111111112344444444333322
Q ss_pred CchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhccc
Q 000191 1130 PDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 1176 (1888)
Q Consensus 1130 ~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi 1176 (1888)
.+ +.-...+..||.+...+|+.++|+++|++++.+..+.
T Consensus 532 ~D--------pkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~ 570 (606)
T KOG0547|consen 532 LD--------PKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTE 570 (606)
T ss_pred cC--------chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence 22 2334578889999999999999999999999987764
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.6e-10 Score=135.50 Aligned_cols=190 Identities=19% Similarity=0.212 Sum_probs=162.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 000191 900 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS 979 (1888)
Q Consensus 900 G~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~a 979 (1888)
|..|-..++-++|+.||++||.+ +|....+|..+|.-|..+.+...|+..|+.|+++. |.--.+
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~--------p~DyRA 400 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN--------PRDYRA 400 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC--------chhHHH
Confidence 56666778899999999999988 77888999999999999999999999999999984 556789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHH
Q 000191 980 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ 1059 (1888)
Q Consensus 980 y~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~ 1059 (1888)
++.||..|..++-..=|+-||++|+.+ .+++ ...+..||.||..+++.++|+.+|.+|+.... .
T Consensus 401 WYGLGQaYeim~Mh~YaLyYfqkA~~~-----kPnD---sRlw~aLG~CY~kl~~~~eAiKCykrai~~~d--------t 464 (559)
T KOG1155|consen 401 WYGLGQAYEIMKMHFYALYYFQKALEL-----KPND---SRLWVALGECYEKLNRLEEAIKCYKRAILLGD--------T 464 (559)
T ss_pred HhhhhHHHHHhcchHHHHHHHHHHHhc-----CCCc---hHHHHHHHHHHHHhccHHHHHHHHHHHHhccc--------c
Confidence 999999999999999999999999985 3444 45566789999999999999999999998741 1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 000191 1060 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEA 1122 (1888)
Q Consensus 1060 tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeA 1122 (1888)
...++..||.+|..++++.+|.++|.+.++.. ..-|...+.+..+..||+....+..+..++
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~A 526 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEA 526 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchHHH
Confidence 34678899999999999999999999999877 455778888889999988766655544443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.27 E-value=6e-10 Score=123.82 Aligned_cols=206 Identities=20% Similarity=0.182 Sum_probs=153.3
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000191 931 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010 (1888)
Q Consensus 931 hpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki 1010 (1888)
....+..+.++|.+|+..|++++|+.++++++.. +|....++..+|.+|..+|++++|+.+|++++.+
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---- 94 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL---- 94 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----
Confidence 3445788999999999999999999999999875 3556788899999999999999999999999985
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1011 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1011 ~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
. |.....+.++|.+|...|++++|+.+|++++... ........+..+|.+|...|++++|..++++++.+
T Consensus 95 -~---~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (234)
T TIGR02521 95 -N---PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI 164 (234)
T ss_pred -C---CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 3334678899999999999999999999998742 22334566788999999999999999999999865
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000191 1091 LRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVA 1170 (1888)
Q Consensus 1091 ~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKAL 1170 (1888)
.+++......+..+ +...+..+.+.......... .+.....+..++.++...|+.++|..+.+.+.
T Consensus 165 -----~~~~~~~~~~la~~-~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 165 -----DPQRPESLLELAEL-YYLRGQYKDARAYLERYQQT--------YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred -----CcCChHHHHHHHHH-HHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444333222222 33334444443332221110 01223456678889999999999999988766
Q ss_pred HH
Q 000191 1171 KV 1172 (1888)
Q Consensus 1171 eL 1172 (1888)
.+
T Consensus 231 ~~ 232 (234)
T TIGR02521 231 KL 232 (234)
T ss_pred hh
Confidence 54
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF05303 DUF727: Protein of unknown function (DUF727); InterPro: IPR007967 This family consists of several uncharacterised eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.8e-12 Score=128.86 Aligned_cols=63 Identities=24% Similarity=0.366 Sum_probs=50.1
Q ss_pred CCceEEEEEEEeCCceEEEEEeccceeecCC--------------CccccchHHHHHhhhcHHHHHHHHHHHHHhhc
Q 000191 216 DDHLLSLDVKLCNGKMVNVEACRKGFYSVGK--------------QRILCHNIVDLLGQLSRAFDNAYNELMNAFSE 278 (1888)
Q Consensus 216 ~Gdl~YL~v~t~Eg~~~~ITa~~~GFyvn~~--------------~~~~~HsLv~LL~~iSp~F~~~f~~l~k~~~~ 278 (1888)
.|||+||+|+|+||+.||||+|++||||++. ....+|||.+||++|||.|++.|...+..+.+
T Consensus 29 ~~~l~Ylnv~TlEg~~~cIelt~~Gf~V~s~~~D~~~~~~~~~~~~~~~~eTl~~LL~~iSP~fr~~F~~~L~~kL~ 105 (108)
T PF05303_consen 29 TGDLIYLNVTTLEGRTYCIELTTKGFRVVSSTFDCMDPDPSQSSLHTKYFETLYALLDSISPLFRKRFGEKLSQKLE 105 (108)
T ss_dssp ETTEEEEEEE-TT--EEEEEEETTEEEEEESSTT---TT---------EESSSHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEEecCCEEEEEEECCeEEEeeecCCCcCcccccccccchHHhhHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999733 12367999999999999999999987776543
|
; PDB: 1SGO_A. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.7e-10 Score=147.31 Aligned_cols=235 Identities=18% Similarity=0.226 Sum_probs=159.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 973 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh 973 (1888)
..++.+|..+...|++++|+.+|++++.. +|....++..++.+|...|++++|+.++++++.. +
T Consensus 500 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~ 563 (899)
T TIGR02917 500 PAAANLARIDIQEGNPDDAIQRFEKVLTI--------DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL--------N 563 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence 34556677777777777777777777664 2334456777788888888888888887777664 2
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 000191 974 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 1053 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~ 1053 (1888)
+.....+..++.+|...|++++|+.++++++.. +|....++..+|.+|...|++++|+.+|+++++..
T Consensus 564 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---- 631 (899)
T TIGR02917 564 PQEIEPALALAQYYLGKGQLKKALAILNEAADA--------APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ---- 631 (899)
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence 344556777888888888888888888887653 23344667888999999999999999999888753
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh
Q 000191 1054 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDAS 1133 (1888)
Q Consensus 1054 G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~ 1133 (1888)
++ ....+..+|.+|...|++++|+.++++++.+ .+++.........+ +...+..+.+..+......
T Consensus 632 -~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~---- 697 (899)
T TIGR02917 632 -PD---SALALLLLADAYAVMKNYAKAITSLKRALEL-----KPDNTEAQIGLAQL-LLAAKRTESAKKIAKSLQK---- 697 (899)
T ss_pred -CC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHh----
Confidence 22 3456778899999999999999999888754 35554433222222 2333344444333322110
Q ss_pred hhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000191 1134 IASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1134 ~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
..+.....+..+|.+|...|++++|+.+|++++....
T Consensus 698 ----~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 734 (899)
T TIGR02917 698 ----QHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP 734 (899)
T ss_pred ----hCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC
Confidence 1112334677788888889999999999988887643
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.6e-10 Score=144.50 Aligned_cols=237 Identities=12% Similarity=0.035 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHHHHc---CChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhc---------CCHHHHHHHH
Q 000191 891 ADGRQLLESSKTALDK---GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT---------GDFNQATIYQ 958 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~q---Gd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~l---------GdyeeAl~~~ 958 (1888)
.++..++..|..++.. +.+++|+.+|++|+++ +|..+.+|..||.+|..+ +++++|+.++
T Consensus 256 ~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~ 327 (553)
T PRK12370 256 IDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHA 327 (553)
T ss_pred hHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHH
Confidence 3455667677666544 3467899999999876 566677888899887644 3488999999
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHH
Q 000191 959 QKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVA 1038 (1888)
Q Consensus 959 eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeA 1038 (1888)
++|+.+ .|....++..+|.++..+|++++|+.+|++|+.+ .|..+.+++++|.+|...|++++|
T Consensus 328 ~~Al~l--------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~G~~~eA 391 (553)
T PRK12370 328 IKATEL--------DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMAGQLEEA 391 (553)
T ss_pred HHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 999886 4666788999999999999999999999999986 355566789999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 000191 1039 LRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFE 1118 (1888)
Q Consensus 1039 le~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e 1118 (1888)
+.+|++|+++. +.++ ..++.++.++...|++++|+..+++++.. ..++++.....+. ..+...+..+
T Consensus 392 i~~~~~Al~l~-----P~~~---~~~~~~~~~~~~~g~~eeA~~~~~~~l~~----~~p~~~~~~~~la-~~l~~~G~~~ 458 (553)
T PRK12370 392 LQTINECLKLD-----PTRA---AAGITKLWITYYHTGIDDAIRLGDELRSQ----HLQDNPILLSMQV-MFLSLKGKHE 458 (553)
T ss_pred HHHHHHHHhcC-----CCCh---hhHHHHHHHHHhccCHHHHHHHHHHHHHh----ccccCHHHHHHHH-HHHHhCCCHH
Confidence 99999999874 3332 23344566677799999999999887643 1344444222221 2233345555
Q ss_pred HHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000191 1119 QQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1119 ~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
.+.......... .+.-......++..|..+|+ +|...+++.++..+
T Consensus 459 eA~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~ 504 (553)
T PRK12370 459 LARKLTKEISTQ--------EITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQ 504 (553)
T ss_pred HHHHHHHHhhhc--------cchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhh
Confidence 555443322111 11223456677777777774 77777777665444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.7e-10 Score=151.89 Aligned_cols=236 Identities=17% Similarity=0.063 Sum_probs=176.4
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+..++.+|.++.. |+..+|+..+.+++... |.. .....+|.++...|++++|+.++++++.. .
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--------Pd~-~~~L~lA~al~~~Gr~eeAi~~~rka~~~------~ 539 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--------PDA-WQHRAVAYQAYQVEDYATALAAWQKISLH------D 539 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--------Cch-HHHHHHHHHHHHCCCHHHHHHHHHHHhcc------C
Confidence 46678888988887 89999999999998762 322 23566788888999999999999987443 1
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
+ ....+.++|.++...|++++|+.+|++++.+ +|.....+..++..+..+|++++|+.+|++++++.
T Consensus 540 --p-~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~-- 606 (987)
T PRK09782 540 --M-SNEDLLAAANTAQAAGNGAARDRWLQQAEQR--------GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA-- 606 (987)
T ss_pred --C-CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--
Confidence 1 1234678899999999999999999999874 23444555567777778899999999999999874
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 000191 1052 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD 1131 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~ 1131 (1888)
+ . ...+.++|.++..+|++++|+.++++++.+ .|++......+.+. +...+..+.+........
T Consensus 607 ---P---~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-----~Pd~~~a~~nLG~a-L~~~G~~eeAi~~l~~AL--- 670 (987)
T PRK09782 607 ---P---S-ANAYVARATIYRQRHNVPAAVSDLRAALEL-----EPNNSNYQAALGYA-LWDSGDIAQSREMLERAH--- 670 (987)
T ss_pred ---C---C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH-HHHCCCHHHHHHHHHHHH---
Confidence 2 2 567899999999999999999999999965 57777544333322 222333444433332221
Q ss_pred hhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1132 ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1132 ~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
...+....++.++|.+|..+|++++|+.+|++++++.....
T Consensus 671 -----~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a 711 (987)
T PRK09782 671 -----KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQA 711 (987)
T ss_pred -----HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCc
Confidence 11224457899999999999999999999999999886543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.2e-10 Score=127.30 Aligned_cols=177 Identities=19% Similarity=0.232 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+..++.+|..++..|++++|+..|++++... +.++....++..+|.+|+.+|++++|+..+++++... +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-----p 101 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-----P 101 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----c
Confidence 36788999999999999999999999998762 4556666789999999999999999999999999863 4
Q ss_pred CChhhHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHhcCCCChhHHH--------------HHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRL--------QHTELALKYVKRALYLLHLTCGPSHPNTAA--------------TYINVAMME 1029 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~l--------GdyeeALey~~kALeL~~ki~G~dhP~~a~--------------a~~NLA~iy 1029 (1888)
+++....+++.+|.++... |++++|+.+|++++... ++++.... ....+|.+|
T Consensus 102 ~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~ 176 (235)
T TIGR03302 102 NHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-----PNSEYAPDAKKRMDYLRNRLAGKELYVARFY 176 (235)
T ss_pred CCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-----CCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667889999999886 88999999999998752 33332221 124688999
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000191 1030 EGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 1088 (1888)
Q Consensus 1030 ~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkAL 1088 (1888)
...|++.+|+..|+++++.+ ++++....+++.+|.+|..+|++++|..+++...
T Consensus 177 ~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 177 LKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999875 5567788999999999999999999999876543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4e-10 Score=145.89 Aligned_cols=220 Identities=12% Similarity=0.019 Sum_probs=153.6
Q ss_pred HcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 000191 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLA 984 (1888)
Q Consensus 905 ~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA 984 (1888)
..+++++|+.++++|+++ +|..+.++..+|.++..+|++++|+.+|++|+.+ .|....+++++|
T Consensus 316 ~~~~~~~A~~~~~~Al~l--------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg 379 (553)
T PRK12370 316 KQNAMIKAKEHAIKATEL--------DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYG 379 (553)
T ss_pred cchHHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHH
Confidence 345689999999999987 5666778999999999999999999999999987 466677899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 000191 985 VFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASY 1064 (1888)
Q Consensus 985 ~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al 1064 (1888)
.+|..+|++++|+.++++|+.+ .+.++ ..+..++.++...|++++|+.+++++++.. .+.....+
T Consensus 380 ~~l~~~G~~~eAi~~~~~Al~l-----~P~~~---~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-------~p~~~~~~ 444 (553)
T PRK12370 380 WNLFMAGQLEEALQTINECLKL-----DPTRA---AAGITKLWITYYHTGIDDAIRLGDELRSQH-------LQDNPILL 444 (553)
T ss_pred HHHHHCCCHHHHHHHHHHHHhc-----CCCCh---hhHHHHHHHHHhccCHHHHHHHHHHHHHhc-------cccCHHHH
Confidence 9999999999999999999986 33333 334446667778999999999999987652 12344567
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHH
Q 000191 1065 HAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSD 1144 (1888)
Q Consensus 1065 ~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svae 1144 (1888)
.++|.+|..+|++++|...+++.... .+....+...++..+.+..+.+.+......... . ....
T Consensus 445 ~~la~~l~~~G~~~eA~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~a~~~l~~ll~~~-~-~~~~------ 508 (553)
T PRK12370 445 SMQVMFLSLKGKHELARKLTKEISTQ--------EITGLIAVNLLYAEYCQNSERALPTIREFLESE-Q-RIDN------ 508 (553)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhhhc--------cchhHHHHHHHHHHHhccHHHHHHHHHHHHHHh-h-Hhhc------
Confidence 88999999999999999998765422 222222333333333333333333221111000 0 0110
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1145 LLDYINPSHDTKGRNVSTLKRKTYVAKV 1172 (1888)
Q Consensus 1145 lL~~Lg~~y~~qGdyeEAleyyeKALeL 1172 (1888)
-...+..+|.-+|+-+.|..+ +++.+-
T Consensus 509 ~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 509 NPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred CchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 123367777778888888777 555443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-10 Score=144.75 Aligned_cols=226 Identities=17% Similarity=0.133 Sum_probs=164.7
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH----------H----------------Hhc
Q 000191 916 GTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN----------E----------------REL 969 (1888)
Q Consensus 916 ~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~----------E----------------r~l 969 (1888)
+++|+..++. +...|..+..++.++|.+|+.+++|++|..+|+.+-.+. - +.+
T Consensus 335 ~~~A~~~~~k-lp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEK-LPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHh-hHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 4444444444 233466777899999999999999999999998863321 1 111
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 970 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
-..+++...+|+-+|.||..+++++.|+++|+||+.+ +|..+.+|.-+|-=+....+||.|..+|++||.+.
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 1234555677899999999999999999999999986 57778888889999999999999999999999874
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHhcC
Q 000191 1050 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY--FESKAFEQQEAARNGT 1127 (1888)
Q Consensus 1050 ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~--L~qka~e~AeAl~~~~ 1127 (1888)
+..-.+|+-||.+|.++++++.|.-+|++|++| .|.. ......+.. ...+..+++..+...+
T Consensus 486 --------~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I-----NP~n---svi~~~~g~~~~~~k~~d~AL~~~~~A 549 (638)
T KOG1126|consen 486 --------PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI-----NPSN---SVILCHIGRIQHQLKRKDKALQLYEKA 549 (638)
T ss_pred --------chhhHHHHhhhhheeccchhhHHHHHHHhhhcC-----Cccc---hhHHhhhhHHHHHhhhhhHHHHHHHHH
Confidence 334578999999999999999999999999976 2333 333333333 3344444444444433
Q ss_pred CCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000191 1128 RKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1128 ~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
...+. + +. -..+..+.++...++|.+|+..+++..++..
T Consensus 550 ~~ld~----k---n~-l~~~~~~~il~~~~~~~eal~~LEeLk~~vP 588 (638)
T KOG1126|consen 550 IHLDP----K---NP-LCKYHRASILFSLGRYVEALQELEELKELVP 588 (638)
T ss_pred HhcCC----C---Cc-hhHHHHHHHHHhhcchHHHHHHHHHHHHhCc
Confidence 32221 1 11 1346778888999999999999998776543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.7e-10 Score=124.07 Aligned_cols=210 Identities=17% Similarity=0.165 Sum_probs=160.5
Q ss_pred CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000191 930 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 1009 (1888)
Q Consensus 930 dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~k 1009 (1888)
++...+.++..||.-|+..|++..|...++|||++ +|....++.-+|.+|..+|+.+.|.+.|++|+.+
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--- 98 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--- 98 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc---
Confidence 34456788999999999999999999999999997 6778899999999999999999999999999986
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000191 1010 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1010 i~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALe 1089 (1888)
+|....+++|.|+.+..+|++++|..+|++|+.. +.....+.++.|+|.|..++|+++.|..+|+++++
T Consensus 99 -----~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~ 167 (250)
T COG3063 99 -----APNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE 167 (250)
T ss_pred -----CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence 5777899999999999999999999999999875 55666788999999999999999999999999996
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000191 1090 ILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYV 1169 (1888)
Q Consensus 1090 I~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKA 1169 (1888)
+ .++.+.....+..+.+. .+.+-.+..+...... ... ..++.+.....+....|+-+.|..|-.+.
T Consensus 168 ~-----dp~~~~~~l~~a~~~~~-~~~y~~Ar~~~~~~~~-------~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 168 L-----DPQFPPALLELARLHYK-AGDYAPARLYLERYQQ-------RGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred h-----CcCCChHHHHHHHHHHh-cccchHHHHHHHHHHh-------ccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 5 35544444333333222 2222223222221100 000 22344555566677889999888887666
Q ss_pred HHHhcc
Q 000191 1170 AKVKGN 1175 (1888)
Q Consensus 1170 LeL~dS 1175 (1888)
.+....
T Consensus 234 ~r~fP~ 239 (250)
T COG3063 234 QRLFPY 239 (250)
T ss_pred HHhCCC
Confidence 655443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.5e-10 Score=148.96 Aligned_cols=232 Identities=15% Similarity=-0.001 Sum_probs=177.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000191 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 975 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ 975 (1888)
.+.+|..+...|++++|+.+|++++.. .+. ...+..+|.++...|++++|+.++++++.. +|.
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--------~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~ 574 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH--------DMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQR--------GLG 574 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--------CCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCc
Confidence 555677788999999999999987543 111 234678899999999999999999999875 244
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 976 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 1055 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~ 1055 (1888)
....+..++..+...|++++|+.+|++|+.+ .|. ...+.++|.++..+|++++|+.+|++++++.
T Consensus 575 ~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--------~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~------ 639 (987)
T PRK09782 575 DNALYWWLHAQRYIPGQPELALNDLTRSLNI--------APS-ANAYVARATIYRQRHNVPAAVSDLRAALELE------ 639 (987)
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------
Confidence 4555666777777889999999999999975 244 6788999999999999999999999999874
Q ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhh
Q 000191 1056 DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIA 1135 (1888)
Q Consensus 1056 d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~a 1135 (1888)
|....++.++|.++...|++++|+.+|++|+++ .|+++.....+.++ +...+..+.+...........
T Consensus 640 --Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-----~P~~~~a~~nLA~a-l~~lGd~~eA~~~l~~Al~l~---- 707 (987)
T PRK09782 640 --PNNSNYQAALGYALWDSGDIAQSREMLERAHKG-----LPDDPALIRQLAYV-NQRLDDMAATQHYARLVIDDI---- 707 (987)
T ss_pred --CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHhcC----
Confidence 344578899999999999999999999999965 57777655444443 344445555554443332221
Q ss_pred hcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000191 1136 SKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1136 s~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
+..+.+...+|.+...+.+++.|.+.|.++..+...
T Consensus 708 ----P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 708 ----DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred ----CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 244556778888888888888888888888776544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=5e-09 Score=142.84 Aligned_cols=271 Identities=13% Similarity=0.009 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000191 895 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 974 (1888)
Q Consensus 895 ~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp 974 (1888)
.....|..++..|++++|..++++++..... ......+.++..+|.++...|++++|..++++++...++. |. ..
T Consensus 454 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~-g~-~~ 528 (903)
T PRK04841 454 FNALRAQVAINDGDPEEAERLAELALAELPL---TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH-DV-YH 528 (903)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh-cc-hH
Confidence 3344678888999999999999999875221 1222245677889999999999999999999999988763 32 23
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 000191 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G 1054 (1888)
....++.++|.++..+|++++|..++.+++.+.....+..++....++..+|.++...|++++|..++++++.+.... +
T Consensus 529 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~-~ 607 (903)
T PRK04841 529 YALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY-Q 607 (903)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc-C
Confidence 345678999999999999999999999999998876554555555667789999999999999999999999987643 2
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHH------------------H----------
Q 000191 1055 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDA------------------A---------- 1106 (1888)
Q Consensus 1055 ~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a------------------~---------- 1106 (1888)
....+.++..+|.++...|++++|..++.++..++... + .+...... .
T Consensus 608 --~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~ 683 (903)
T PRK04841 608 --PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNG-R-YHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE 683 (903)
T ss_pred --chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-c-ccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC
Confidence 22345677789999999999999999999998875442 1 11100000 0
Q ss_pred -----------HHHH--HHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 000191 1107 -----------AWLE--YFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 1173 (1888)
Q Consensus 1107 -----------~~La--~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~ 1173 (1888)
..++ +...+..+.+......... .............++..+|.+|..+|++++|..++.+|+++.
T Consensus 684 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~--~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 684 FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE--NARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 0011 1111112222111111100 011112222455678888999999999999999999999988
Q ss_pred cccc
Q 000191 1174 GNFY 1177 (1888)
Q Consensus 1174 dSi~ 1177 (1888)
...+
T Consensus 762 ~~~g 765 (903)
T PRK04841 762 NRTG 765 (903)
T ss_pred Cccc
Confidence 7655
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.3e-10 Score=138.83 Aligned_cols=209 Identities=19% Similarity=0.174 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+-.++..|..|+..|++.+|..||.+|-.+ ++..+.+|..+|..|...|+.++|+..|..|-++.. |
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~---G-- 378 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMP---G-- 378 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhcc---C--
Confidence 344566678888999999999999999876 667788999999999999999999999999988753 2
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
.-.-+..||.-|.+.++++.|.++|.+|+.++ +.+ ..+++.+|.+....+.|.+|..+|+.++...+..
T Consensus 379 ---~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-----P~D---plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~ 447 (611)
T KOG1173|consen 379 ---CHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-----PSD---PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSV 447 (611)
T ss_pred ---CcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-----CCc---chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhc
Confidence 22345678999999999999999999999974 334 4567889999999999999999999999766555
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDA 1132 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~ 1132 (1888)
+...+.+.-++.|||.+|.+++.+++|+.++++|+.+ .+.+
T Consensus 448 -~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-----~~k~--------------------------------- 488 (611)
T KOG1173|consen 448 -LNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-----SPKD--------------------------------- 488 (611)
T ss_pred -cccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-----CCCc---------------------------------
Confidence 4445567888999999999999999999999999843 2222
Q ss_pred hhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000191 1133 SIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1133 ~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
.+++..+|.+|..+|+.+.|+.+|.+||.+..
T Consensus 489 ----------~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 489 ----------ASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred ----------hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 23466677788888888888888888887654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=5e-09 Score=125.57 Aligned_cols=175 Identities=18% Similarity=0.110 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
..+..++.+|..+...|++++|+..|++++.+ +|..+.+|.++|.+|..+|++++|+..|++|+.+
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l------ 127 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL------ 127 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------
Confidence 34677999999999999999999999999986 4666789999999999999999999999999987
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000191 971 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
.|+...++.++|.+++..|++++|+..|++++.+ .++++.. ..+ ..++...+++++|+..|.+++....
T Consensus 128 --~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-----~P~~~~~-~~~---~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 128 --DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-----DPNDPYR-ALW---LYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred --CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHH-HHH---HHHHHccCCHHHHHHHHHHHHhhCC
Confidence 4666788999999999999999999999999975 3444421 111 1233456778888888866553210
Q ss_pred ----------HhcCCC-------------------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1051 ----------RLLGPD-------------------HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1051 ----------k~~G~d-------------------~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
-..|.. .+....+|++||.+|..+|++++|+.+|++|+++
T Consensus 197 ~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 197 KEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred ccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 011111 1123467999999999999999999999999854
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-09 Score=129.32 Aligned_cols=238 Identities=16% Similarity=0.159 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhcC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG--DFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lG--dyeeAl~~~eKAL~I~Er~lG 970 (1888)
...-...|..++.+|+++.|++.+. .++. .++.....+-.+|..+++.+| ++.+|..|...|+.+
T Consensus 419 ~dlei~ka~~~lk~~d~~~aieilk----v~~~---kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~------ 485 (840)
T KOG2003|consen 419 IDLEINKAGELLKNGDIEGAIEILK----VFEK---KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI------ 485 (840)
T ss_pred hhhhhhHHHHHHhccCHHHHHHHHH----HHHh---ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc------
Confidence 3344566788899999999987653 2222 344555567788999988865 788898999988876
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000191 971 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
+...+.++.|-|.+-+..|++++|.+.|+.||. ++.....+++|+|..+..+|++++|+++|-+.-.+.
T Consensus 486 --dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~ldeald~f~klh~il- 554 (840)
T KOG2003|consen 486 --DRYNAAALTNKGNIAFANGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL- 554 (840)
T ss_pred --cccCHHHhhcCCceeeecCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-
Confidence 234567788999999999999999999999985 455677899999999999999999999999888776
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 1051 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKP 1130 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~ 1130 (1888)
...+..++++|.+|..+.+..+|++++.++..+ -++++..+.- |+.++.+.++..+++......
T Consensus 555 -------~nn~evl~qianiye~led~aqaie~~~q~~sl-----ip~dp~ilsk---l~dlydqegdksqafq~~yds- 618 (840)
T KOG2003|consen 555 -------LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-----IPNDPAILSK---LADLYDQEGDKSQAFQCHYDS- 618 (840)
T ss_pred -------HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-----CCCCHHHHHH---HHHHhhcccchhhhhhhhhhc-
Confidence 346788999999999999999999999888744 4888876544 455555555555444321110
Q ss_pred chhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000191 1131 DASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1131 ~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
-..-+...++..+||..|....-.++|+.||++|.-+...
T Consensus 619 -----yryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 619 -----YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred -----ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 0112244567788999999999999999999998766443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.8e-08 Score=120.19 Aligned_cols=195 Identities=18% Similarity=0.159 Sum_probs=157.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000191 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 975 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ 975 (1888)
|..+|..|.++.+-++....|.+|..+ +|+...+|+..|.+++.+++|++|+.-|++|+.+ .|+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~l--------dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--------~pe 426 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDL--------DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--------DPE 426 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhc--------CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--------Chh
Confidence 778899999999999999999999887 5666679999999999999999999999999987 588
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 976 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 1055 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~ 1055 (1888)
.+.+|..|+...+++++++++...|+.+..- .|....+|+..|.++..+++|++|++.|..|+++-....+.
T Consensus 427 ~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--------FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~ 498 (606)
T KOG0547|consen 427 NAYAYIQLCCALYRQHKIAESMKTFEEAKKK--------FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI 498 (606)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc
Confidence 8999999999999999999999999999874 37777889999999999999999999999999986543211
Q ss_pred CcHHHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000191 1056 DHIQTAASYHAIAIAL-SLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAAR 1124 (1888)
Q Consensus 1056 d~~~tA~al~nLA~ay-~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~ 1124 (1888)
+. .+..+..-|.+. .-.+++..|++++++|+++ +++.-.+...|+++..++....+++.
T Consensus 499 -~v-~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------Dpkce~A~~tlaq~~lQ~~~i~eAie 558 (606)
T KOG0547|consen 499 -IV-NAAPLVHKALLVLQWKEDINQAENLLRKAIEL--------DPKCEQAYETLAQFELQRGKIDEAIE 558 (606)
T ss_pred -cc-cchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------CchHHHHHHHHHHHHHHHhhHHHHHH
Confidence 11 122222223222 2348999999999999854 56666777788877777666666553
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.8e-09 Score=129.61 Aligned_cols=240 Identities=13% Similarity=0.149 Sum_probs=173.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHH----------H-----------------HHhcCCCChhHHHHHHHHHHHHHhcCCHH
Q 000191 900 SKTALDKGKLEDAVTYGTKALAK----------L-----------------VAVCGPYHRMTAGAYSLLAVVLYHTGDFN 952 (1888)
Q Consensus 900 G~~~l~qGd~dEAie~~eeAL~l----------~-----------------eqi~G~dhpe~A~ay~~LA~ly~~lGdye 952 (1888)
|.+.+.+.++++|+..|++.+.. + +.++ ..+.........+|..|...++.+
T Consensus 269 A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHE 347 (559)
T KOG1155|consen 269 AAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHE 347 (559)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHH-HhccCCccceeeehhHHHHHHhHH
Confidence 45666778888888888887652 0 0000 011112223455677888889999
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC
Q 000191 953 QATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL 1032 (1888)
Q Consensus 953 eAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~l 1032 (1888)
.|+.||++||.+ +|....++..+|.=|..+.+...|+..|++|+++. |..-.+++.||.+|.-+
T Consensus 348 KAv~YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~--------p~DyRAWYGLGQaYeim 411 (559)
T KOG1155|consen 348 KAVMYFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN--------PRDYRAWYGLGQAYEIM 411 (559)
T ss_pred HHHHHHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC--------chhHHHHhhhhHHHHHh
Confidence 999999999997 57788899999999999999999999999999973 56678999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000191 1033 GNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF 1112 (1888)
Q Consensus 1033 G~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L 1112 (1888)
+-..-|+-||++|+++. |.....+..||.+|.++++.++|+.+|+.|+.. |... ..++..|+.+
T Consensus 412 ~Mh~YaLyYfqkA~~~k--------PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-----~dte---~~~l~~LakL 475 (559)
T KOG1155|consen 412 KMHFYALYYFQKALELK--------PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-----GDTE---GSALVRLAKL 475 (559)
T ss_pred cchHHHHHHHHHHHhcC--------CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-----cccc---hHHHHHHHHH
Confidence 99999999999999874 334567788899999999999999999999853 3322 2345556666
Q ss_pred HHHHHHHHHHHHhcCCCCch-hhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1113 ESKAFEQQEAARNGTRKPDA-SIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 1172 (1888)
Q Consensus 1113 ~qka~e~AeAl~~~~~~~~~-~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL 1172 (1888)
..+..+..++.......... ...+.-.+....+..+|+.-+.+.++|++|..|..+++..
T Consensus 476 ye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 476 YEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 55544443332211000000 0111112235566778999999999999999988777654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-08 Score=131.38 Aligned_cols=254 Identities=14% Similarity=0.085 Sum_probs=182.4
Q ss_pred cccHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 000191 887 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 966 (1888)
Q Consensus 887 ~~~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~E 966 (1888)
...+..+..+|.+|+.|..+|+|++|..||.+++... .++ ..-.+..||.+|.+.|+++.|...|++.+...
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-----~d~--~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~- 372 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-----NDN--FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL- 372 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-----CCC--ccccccchhHHHHHhchHHHHHHHHHHHHHhC-
Confidence 3445568889999999999999999999999998762 222 34578899999999999999999999998863
Q ss_pred HhcCCCChhhHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Q 000191 967 RELGLDHPDTMKSYGDLAVFYYRLQ----HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYL 1042 (1888)
Q Consensus 967 r~lG~Dhp~ta~ay~nLA~ly~~lG----dyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~L 1042 (1888)
|+...+..-||.+|...+ ..++|..++.+++.. .|....+|..+|.+|....-+. ++.+|
T Consensus 373 -------p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--------~~~d~~a~l~laql~e~~d~~~-sL~~~ 436 (1018)
T KOG2002|consen 373 -------PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--------TPVDSEAWLELAQLLEQTDPWA-SLDAY 436 (1018)
T ss_pred -------cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--------ccccHHHHHHHHHHHHhcChHH-HHHHH
Confidence 445556666777777765 456677777777654 2566789999999987655554 59999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCH-HH-HHHHHHHHHHHHHH--HH
Q 000191 1043 HKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDL-RT-QDAAAWLEYFESKA--FE 1118 (1888)
Q Consensus 1043 ekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~-~t-l~a~~~La~L~qka--~e 1118 (1888)
..|+.++....+. .-...++++|..++.+|++.+|..++.+|+..+......+.. .+ +....+|+.+.... .+
T Consensus 437 ~~A~d~L~~~~~~---ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~ 513 (1018)
T KOG2002|consen 437 GNALDILESKGKQ---IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTE 513 (1018)
T ss_pred HHHHHHHHHcCCC---CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhh
Confidence 9999998776443 345678999999999999999999999999886654443331 11 11233344333222 22
Q ss_pred HHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000191 1119 QQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1119 ~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
.+..++.. -..-|+...+.|..+|.....+++..+|..+++.++.+..+
T Consensus 514 ~A~e~Yk~--------Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~ 562 (1018)
T KOG2002|consen 514 VAEEMYKS--------ILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS 562 (1018)
T ss_pred HHHHHHHH--------HHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC
Confidence 23322221 12235567777888887777888888888888888876544
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-08 Score=116.78 Aligned_cols=181 Identities=15% Similarity=0.120 Sum_probs=137.2
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000191 931 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010 (1888)
Q Consensus 931 hpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki 1010 (1888)
....+..++.+|..++..|++++|+..+++++... ++++....+++.+|.+|..+|++++|+..|++++..
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~---- 99 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL---- 99 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----
Confidence 34567899999999999999999999999998763 456666788999999999999999999999999985
Q ss_pred cCCCChhHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH--------------HHHH
Q 000191 1011 CGPSHPNTAATYINVAMMEEGL--------GNVHVALRYLHKALKCNQRLLGPDHIQTAASY--------------HAIA 1068 (1888)
Q Consensus 1011 ~G~dhP~~a~a~~NLA~iy~~l--------G~yeeAle~LekALei~ek~~G~d~~~tA~al--------------~nLA 1068 (1888)
.++++....+++.+|.++... |++++|+..|+++++.. +++.....++ ..+|
T Consensus 100 -~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~~a 173 (235)
T TIGR03302 100 -HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-----PNSEYAPDAKKRMDYLRNRLAGKELYVA 173 (235)
T ss_pred -CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-----CCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777889999999876 78999999999998764 3333332222 2445
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHH
Q 000191 1069 IALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDY 1148 (1888)
Q Consensus 1069 ~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~ 1148 (1888)
.+|..+|++.+|+..++++++.+ ++.+...+++..
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~---------------------------------------------p~~~~~~~a~~~ 208 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENY---------------------------------------------PDTPATEEALAR 208 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHC---------------------------------------------CCCcchHHHHHH
Confidence 55555555555555555444321 112244567889
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 000191 1149 INPSHDTKGRNVSTLKRKTYVAK 1171 (1888)
Q Consensus 1149 Lg~~y~~qGdyeEAleyyeKALe 1171 (1888)
+|.+|...|++++|..+++....
T Consensus 209 l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 209 LVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999998876544
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.2e-09 Score=122.74 Aligned_cols=235 Identities=17% Similarity=0.127 Sum_probs=185.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 000191 897 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 976 (1888)
Q Consensus 897 lelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~t 976 (1888)
.++|+.|+..|-+.+|...++.+|... .|+ ..+..|+.+|.+..+...|+..+.+.++. -|..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~------~~~---dTfllLskvY~ridQP~~AL~~~~~gld~--------fP~~ 289 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF------PHP---DTFLLLSKVYQRIDQPERALLVIGEGLDS--------FPFD 289 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC------Cch---hHHHHHHHHHHHhccHHHHHHHHhhhhhc--------CCch
Confidence 356899999999999999999999863 344 47888999999999999999999888875 3666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 977 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 1056 (1888)
Q Consensus 977 a~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d 1056 (1888)
...+..+|.++..++++++|+++|+.++++ ||....+...+|.-|.--++.+-|+.||++.|.+ |..
T Consensus 290 VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-----G~~ 356 (478)
T KOG1129|consen 290 VTYLLGQARIHEAMEQQEDALQLYKLVLKL--------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-----GAQ 356 (478)
T ss_pred hhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--------CCccceeeeeeeeccccCCChHHHHHHHHHHHHh-----cCC
Confidence 777889999999999999999999999875 5666666777888899999999999999999987 444
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCCchhh
Q 000191 1057 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF--ESKAFEQQEAARNGTRKPDASI 1134 (1888)
Q Consensus 1057 ~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L--~qka~e~AeAl~~~~~~~~~~~ 1134 (1888)
+ ...+.|+|.++...++++-++..+++|+.... +.....+.+.+|.+. ..+....+.......+.
T Consensus 357 s---peLf~NigLCC~yaqQ~D~~L~sf~RAlstat-----~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~----- 423 (478)
T KOG1129|consen 357 S---PELFCNIGLCCLYAQQIDLVLPSFQRALSTAT-----QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT----- 423 (478)
T ss_pred C---hHHHhhHHHHHHhhcchhhhHHHHHHHHhhcc-----CcchhhhhhhccceeEEeccchHHHHHHHHHHhc-----
Confidence 4 45688999999999999999999999997653 233344555555543 23334444333222221
Q ss_pred hhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1135 ASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1135 as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
+...-.+.|++||.+..+.|+.++|..+|..|..+..-++
T Consensus 424 ---~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 424 ---SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred ---cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccc
Confidence 2234567899999999999999999999999998887776
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.8e-08 Score=131.29 Aligned_cols=154 Identities=19% Similarity=0.151 Sum_probs=118.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 000191 899 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK 978 (1888)
Q Consensus 899 lG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ 978 (1888)
...++...|++++|+..+.+++.. .+..+.++..+|.++..+|++++|+.++++++.+ .|....
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~--------~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--------~P~~~~ 84 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVH--------MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--------EPQNDD 84 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHH
Confidence 346677889999999888877653 3455667888999999999999999999998876 344456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcH
Q 000191 979 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI 1058 (1888)
Q Consensus 979 ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~ 1058 (1888)
++..+|.++...|++++|+.++++++.. +|.... +..+|.+|...|++++|+..|++++++. ++
T Consensus 85 a~~~la~~l~~~g~~~eA~~~l~~~l~~--------~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-----P~-- 148 (765)
T PRK10049 85 YQRGLILTLADAGQYDEALVKAKQLVSG--------APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-----PQ-- 148 (765)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CC--
Confidence 6778899999999999999999988875 344445 7778999999999999999999998874 33
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000191 1059 QTAASYHAIAIALSLMEAYPLSVQHEQ 1085 (1888)
Q Consensus 1059 ~tA~al~nLA~ay~~lGdydeAle~lq 1085 (1888)
...++..+|.++...|..++|+..++
T Consensus 149 -~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 149 -TQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred -CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 34445566878877788777776555
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.3e-08 Score=131.77 Aligned_cols=247 Identities=15% Similarity=0.023 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..+..+|..+...|++++|+.+|++++.+ .|....++..+|.++...|++++|+.++++++..
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-------- 112 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSL--------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG-------- 112 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------
Confidence 455777789999999999999999999987 3444567889999999999999999999999886
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH--------
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHK-------- 1044 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~Lek-------- 1044 (1888)
+|.... +..+|.++...|++++|+..|++++.+ +|....++..+|.++...+..++|+..+++
T Consensus 113 ~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--------~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~ 183 (765)
T PRK10049 113 APDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--------APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEK 183 (765)
T ss_pred CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHH
Confidence 345555 889999999999999999999999986 344455666788888888888877766652
Q ss_pred -------------------------------HHHHHHHhcC--CC----cHHHHHHHHH-HHHHHHHcCChHHHHHHHHH
Q 000191 1045 -------------------------------ALKCNQRLLG--PD----HIQTAASYHA-IAIALSLMEAYPLSVQHEQT 1086 (1888)
Q Consensus 1045 -------------------------------ALei~ek~~G--~d----~~~tA~al~n-LA~ay~~lGdydeAle~lqk 1086 (1888)
|++.++.... +. .+....++.. ++ ++...|++++|+..|++
T Consensus 184 ~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ 262 (765)
T PRK10049 184 RDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQR 262 (765)
T ss_pred HHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHH
Confidence 2222222211 01 1122222222 33 34567899999999887
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHH
Q 000191 1087 TLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRK 1166 (1888)
Q Consensus 1087 ALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyy 1166 (1888)
+++. ++..+..........++..+..+.+............. ........+..++.++..+|++++|+.++
T Consensus 263 ll~~-----~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~----~~~~~~~~~~~L~~a~~~~g~~~eA~~~l 333 (765)
T PRK10049 263 LKAE-----GQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPET----IADLSDEELADLFYSLLESENYPGALTVT 333 (765)
T ss_pred hhcc-----CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCC----CCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 6643 22223222222233466666677666554432211100 00011234566677788999999999999
Q ss_pred HHHHHHhc
Q 000191 1167 TYVAKVKG 1174 (1888)
Q Consensus 1167 eKALeL~d 1174 (1888)
+++.....
T Consensus 334 ~~~~~~~P 341 (765)
T PRK10049 334 AHTINNSP 341 (765)
T ss_pred HHHhhcCC
Confidence 98887643
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.7e-09 Score=122.24 Aligned_cols=247 Identities=15% Similarity=0.088 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHHHHHh------cCC---CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 000191 911 DAVTYGTKALAKLVAV------CGP---YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYG 981 (1888)
Q Consensus 911 EAie~~eeAL~l~eqi------~G~---dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~ 981 (1888)
+|.+++.+|-..+... +|. +....+..|...|.+|...+++++|...|.+|..+.++ ..+....+.+|.
T Consensus 2 ~a~~l~~~Aek~lk~~~~~~~~f~~~~~~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~--~~~~~~Aa~~~~ 79 (282)
T PF14938_consen 2 EAEELIKEAEKKLKKSSGFFSFFGSKKPDYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEK--LGDKFEAAKAYE 79 (282)
T ss_dssp HHHHHHHHHHHHCS---TCCCHH--SCHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHhccccchhhhcCCCCCCHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH--cCCHHHHHHHHH
Confidence 3455555555544421 222 23345677888899999999999999999999999888 234456778888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 000191 982 DLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL-GNVHVALRYLHKALKCNQRLLGPDHIQT 1060 (1888)
Q Consensus 982 nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~l-G~yeeAle~LekALei~ek~~G~d~~~t 1060 (1888)
+.|.+|... ++++|+.+|++|+.++... ......+.++.++|.+|... |++++|+++|++|+++++.. ......
T Consensus 80 ~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~--G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e--~~~~~a 154 (282)
T PF14938_consen 80 EAANCYKKG-DPDEAIECYEKAIEIYREA--GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE--GSPHSA 154 (282)
T ss_dssp HHHHHHHHT-THHHHHHHHHHHHHHHHHC--T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT--T-HHHH
T ss_pred HHHHHHHhh-CHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CChhhH
Confidence 988888777 9999999999999998763 23455688999999999999 99999999999999999775 244566
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcC
Q 000191 1061 AASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQD--AAAWLEYFESKAFEQQEAARNGTRKPDASIASKG 1138 (1888)
Q Consensus 1061 A~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~--a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~ 1138 (1888)
..++..+|.++..+|+|++|+..|++....+...-. ....+.. ....|.+|..+....+...........+. -.
T Consensus 155 ~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l-~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~---F~ 230 (282)
T PF14938_consen 155 AECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNL-LKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS---FA 230 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCT-TGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT---ST
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccc-cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CC
Confidence 788899999999999999999999987754321111 1112222 23345566654444444333221111111 11
Q ss_pred CccHHHHHHHHHHHHH--HcCChHHHHHHHHH
Q 000191 1139 HLSVSDLLDYINPSHD--TKGRNVSTLKRKTY 1168 (1888)
Q Consensus 1139 ~~svaelL~~Lg~~y~--~qGdyeEAleyyeK 1168 (1888)
...-..++..|-.++. ....+.+|+.-|.+
T Consensus 231 ~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 231 SSREYKFLEDLLEAYEEGDVEAFTEAVAEYDS 262 (282)
T ss_dssp TSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTT
T ss_pred CcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcc
Confidence 1223344555555553 34556666666644
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.5e-08 Score=118.80 Aligned_cols=189 Identities=17% Similarity=0.082 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..+...|..|...|++++|...|.+|...+.+. .+....+.+|...+.+|... ++++|+.+|++|+.++... .+
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~--~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~--G~ 109 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL--GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA--GR 109 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC--T-
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc--Cc
Confidence 4455566788888999999999999999998773 34456678888888888776 9999999999999999763 34
Q ss_pred ChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 973 HPDTMKSYGDLAVFYYRL-QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~l-GdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
....+.++.++|.+|... |++++|+++|++|+++++.. + .......++.++|.++..+|+|++|+..|++....+..
T Consensus 110 ~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e-~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 110 FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE-G-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT-T--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC-C-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 455678999999999999 99999999999999999873 2 33445778899999999999999999999998775422
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000191 1052 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALe 1089 (1888)
.- ......-..+...+.++...||+..|...+++...
T Consensus 188 ~~-l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 188 NN-LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HC-TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred cc-ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 21 11223445566778899999999988887776553
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.6e-09 Score=126.89 Aligned_cols=209 Identities=13% Similarity=0.101 Sum_probs=146.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 000191 897 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 976 (1888)
Q Consensus 897 lelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~t 976 (1888)
|..|..++..|++.+|.-+|+.|+.. +|..+.+|..||.+....++-..|+..+++|+++ +|..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkq--------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~N 352 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQ--------DPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTN 352 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhh--------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCcc
Confidence 56688889999999999999999865 7888999999999999999999999999999987 6788
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----Hh------cCC----CCh--------------------hHHHH
Q 000191 977 MKSYGDLAVFYYRLQHTELALKYVKRALYLLH-----LT------CGP----SHP--------------------NTAAT 1021 (1888)
Q Consensus 977 a~ay~nLA~ly~~lGdyeeALey~~kALeL~~-----ki------~G~----dhP--------------------~~a~a 1021 (1888)
..++..||..|...|.-.+|+.++.+-+..-- .. .+. .+. .-..+
T Consensus 353 leaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dpdv 432 (579)
T KOG1125|consen 353 LEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDV 432 (579)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhH
Confidence 89999999999999999999999888765320 00 000 000 01123
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHH
Q 000191 1022 YINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLR 1101 (1888)
Q Consensus 1022 ~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~ 1101 (1888)
+..||.+|...|+|+.|+++|+.||.. .|....+++.||-.+..-.+..+|+..|++|+++.
T Consensus 433 Q~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq---------- 494 (579)
T KOG1125|consen 433 QSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ---------- 494 (579)
T ss_pred HhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC----------
Confidence 344444444445555555555544433 13334444444544444444455555444444321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1102 TQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1102 tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
+......++||..|..+|.|++|.+||-.||.|.....
T Consensus 495 --------------------------------------P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~ 532 (579)
T KOG1125|consen 495 --------------------------------------PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSR 532 (579)
T ss_pred --------------------------------------CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhccc
Confidence 12334568899999999999999999999999998865
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.5e-08 Score=113.94 Aligned_cols=273 Identities=14% Similarity=0.051 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYH-RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dh-pe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
...++++++.+....++.+++.|..-.+.+- |... ..-......||.++.-++.+++++++|++|+.++..+ .
T Consensus 83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lp----gt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~--~ 156 (518)
T KOG1941|consen 83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLP----GTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN--D 156 (518)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC----CCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc--C
Confidence 4556666777766677888888877776652 1111 1123456678999999999999999999999997653 3
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-CCCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC-GPSH-PNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~-G~dh-P~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
|...-.+.|..||.+|..+.++++|+-|..+|+++..... +..| -....+++.++..|..+|+.-.|.++.++|.++.
T Consensus 157 D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 157 DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 4444568899999999999999999999999999987643 2212 2245678889999999999999999999999997
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH--HHH---HHHHH
Q 000191 1050 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKA--FEQ---QEAAR 1124 (1888)
Q Consensus 1050 ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka--~e~---AeAl~ 1124 (1888)
-.. .+....+.++.-+|.+|...|+.+.|...|++|+.+.... |..-. ..+++...+...... ... -+++.
T Consensus 237 l~~--Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~-gdrmg-qv~al~g~Akc~~~~r~~~k~~~Crale 312 (518)
T KOG1941|consen 237 LQH--GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL-GDRMG-QVEALDGAAKCLETLRLQNKICNCRALE 312 (518)
T ss_pred HHh--CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh-hhhHH-HHHHHHHHHHHHHHHHHhhcccccchhH
Confidence 665 4566788899999999999999999999999999887653 22111 112221111110000 000 00111
Q ss_pred hcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000191 1125 NGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1125 ~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
......+.+........+..+...++.+|+.+|.-++=...+.++-+....
T Consensus 313 ~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~~e 363 (518)
T KOG1941|consen 313 FNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECVEE 363 (518)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 111111111112223356778899999999999988877777776665444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.2e-08 Score=125.58 Aligned_cols=251 Identities=16% Similarity=0.088 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000191 895 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 974 (1888)
Q Consensus 895 ~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp 974 (1888)
.+..+|..++..|+|..+..+..-|+... ...+..+..++++|++|+.+|+|++|..||.+|+... .+
T Consensus 272 ~l~~LAn~fyfK~dy~~v~~la~~ai~~t-----~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-----~d-- 339 (1018)
T KOG2002|consen 272 ALNHLANHFYFKKDYERVWHLAEHAIKNT-----ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-----ND-- 339 (1018)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-----CC--
Confidence 34456788889999999999999988763 2245678899999999999999999999999998752 22
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHH
Q 000191 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG----NVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG----~yeeAle~LekALei~e 1050 (1888)
.....+..||.+|...|+++.|..+|++.+.. .|+...++.-||.+|...+ ..+.|..++.++++..
T Consensus 340 ~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--------~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~- 410 (1018)
T KOG2002|consen 340 NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--------LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT- 410 (1018)
T ss_pred CccccccchhHHHHHhchHHHHHHHHHHHHHh--------CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-
Confidence 25678899999999999999999999999875 2555566677899998876 4566777777766553
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 1051 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKP 1130 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~ 1130 (1888)
+....+|..||++|....-+ .++.+|..|+.++......--+..+.....+ ++..+.++.+......+...
T Consensus 411 -------~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvasl-hf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 411 -------PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASL-HFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred -------cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHH-HHHhcChHHHHHHHHHHhhh
Confidence 45667888999998775554 4599999999999887777554444444433 44444444443322211111
Q ss_pred chhhhhcC--CccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000191 1131 DASIASKG--HLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1131 ~~~~as~~--~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
.......+ ......+.+++|.++...++++.|-+.|+..++....
T Consensus 482 ~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~ 528 (1018)
T KOG2002|consen 482 LLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG 528 (1018)
T ss_pred hhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch
Confidence 00000010 0122456899999999999999999999998876554
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.1e-08 Score=117.40 Aligned_cols=267 Identities=14% Similarity=0.128 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 973 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh 973 (1888)
....+.|..++...++++|+..+.+.|..+.... .....|..+..+...+|.|++++.+.--.+..+... .|+
T Consensus 7 k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~-----~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds 79 (518)
T KOG1941|consen 7 KKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLM-----GRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDS 79 (518)
T ss_pred HHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHH-----HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 3445667777889999999999999998766543 234678888999999999999998877777666553 345
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 974 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH-PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dh-P~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
.....+|.||+..+....++.+++.|.+..+.+- |... ..-......+|..+..++.+++++++|+.|+++....
T Consensus 80 ~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lp----gt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~ 155 (518)
T KOG1941|consen 80 DFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLP----GTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN 155 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC----CCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 5677899999999999999999999887776642 2211 1123455568999999999999999999999998655
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH---HHHH---HHHHHHHHHHHhc
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL---EYFE---SKAFEQQEAARNG 1126 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~L---a~L~---qka~e~AeAl~~~ 1126 (1888)
.+...-..++..||.+|..+.|+++|+-+..+|+++.... +-++...+.-...| +-.. ...++..+...+.
T Consensus 156 --~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~-~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea 232 (518)
T KOG1941|consen 156 --DDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSY-GLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEA 232 (518)
T ss_pred --CCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhc-CcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3333455778889999999999999999999999998764 43333333222222 1111 1112222222111
Q ss_pred CCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1127 TRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1127 ~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
........+....+..+.-+|++|+.+|+.+.|...|++|+.+..+++
T Consensus 233 ---~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~g 280 (518)
T KOG1941|consen 233 ---MKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLG 280 (518)
T ss_pred ---HHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhh
Confidence 112334455556777889999999999999999999999999998887
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.6e-08 Score=119.74 Aligned_cols=169 Identities=18% Similarity=0.134 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000191 895 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 974 (1888)
Q Consensus 895 ~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp 974 (1888)
..+..|..++..|++++|+.++++++.. +|....++.. +..+..+|++..+...+.+++.. ....++
T Consensus 45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~ 111 (355)
T cd05804 45 RAHVEALSAWIAGDLPKALALLEQLLDD--------YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENP 111 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc----cCcCCC
Confidence 3445678888999999999999999876 2333344444 66666777666666666665543 345677
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 000191 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G 1054 (1888)
.....+..+|.++..+|++++|+..+++++.+. |.....+..+|.+|...|++++|+.++++++.....
T Consensus 112 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--- 180 (355)
T cd05804 112 DYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--- 180 (355)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC---
Confidence 777888888999999999999999999988852 333566778899999999999999999888876522
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000191 1055 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 1088 (1888)
Q Consensus 1055 ~d~~~tA~al~nLA~ay~~lGdydeAle~lqkAL 1088 (1888)
........+..+|.+|...|++++|+..+++++
T Consensus 181 -~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 181 -SSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred -CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 112234456678888999999999998888874
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.5e-08 Score=122.74 Aligned_cols=246 Identities=13% Similarity=0.124 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
+.+.+...+..++..++|.+-.+.....+.. .+-|+... -..|| +++.+|+..+ +|.-+..+.+
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-----dpfh~~~~--~~~ia-~l~el~~~n~---Lf~lsh~LV~----- 306 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-----DPFHLPCL--PLHIA-CLYELGKSNK---LFLLSHKLVD----- 306 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-----CCCCcchH--HHHHH-HHHHhcccch---HHHHHHHHHH-----
Confidence 3566777888999999999988888888776 23444422 23455 7777777654 4444444433
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
++|..+..++.+|.+|...|++.+|.+||.+|..+ ++..+.+|...|..|...|+.++|+.+|..|-++...
T Consensus 307 ~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G 378 (611)
T KOG1173|consen 307 LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG 378 (611)
T ss_pred hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC
Confidence 37888889999999999999999999999999876 3556677888999999999999999999999887632
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 000191 1052 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD 1131 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~ 1131 (1888)
. | .-...+|.=|.++++++.|..+|.+|+.|+ |.++-...-...+++-. +.+..|....+.+....
T Consensus 379 ~----h----lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-----P~Dplv~~Elgvvay~~-~~y~~A~~~f~~~l~~i 444 (611)
T KOG1173|consen 379 C----H----LPSLYLGMEYMRTNNLKLAEKFFKQALAIA-----PSDPLVLHELGVVAYTY-EEYPEALKYFQKALEVI 444 (611)
T ss_pred C----c----chHHHHHHHHHHhccHHHHHHHHHHHHhcC-----CCcchhhhhhhheeehH-hhhHHHHHHHHHHHHHh
Confidence 2 2 123447888999999999999999999885 77776655555444322 22333332222221111
Q ss_pred hhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhccc
Q 000191 1132 ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 1176 (1888)
Q Consensus 1132 ~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi 1176 (1888)
... ......+.-++.+||.+|+++++|++|+.+|++++.+.++.
T Consensus 445 k~~-~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~ 488 (611)
T KOG1173|consen 445 KSV-LNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD 488 (611)
T ss_pred hhc-cccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc
Confidence 111 11112466689999999999999999999999999988763
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.4e-09 Score=101.34 Aligned_cols=78 Identities=37% Similarity=0.533 Sum_probs=72.0
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
||.++.+|.+||.+|..+|+|++|+.+|++|+.+ ...+|.+|+.++.++.++|.+|..+|++++|+.++++|++++++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 6889999999999999999999999999999999 66678899999999999999999999999999999999999753
|
... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.1e-09 Score=100.75 Aligned_cols=78 Identities=32% Similarity=0.454 Sum_probs=72.5
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000191 1015 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 1093 (1888)
Q Consensus 1015 hP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk 1093 (1888)
||+++.++.++|.+|..+|+|++|+.+|++|+++ .+.+|.+++.++.+++++|.+|..+|++++|++++++|++|+++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 7999999999999999999999999999999999 67778888899999999999999999999999999999999864
|
... |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.9e-07 Score=127.67 Aligned_cols=192 Identities=14% Similarity=-0.019 Sum_probs=149.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000191 897 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYH-RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 975 (1888)
Q Consensus 897 lelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dh-pe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ 975 (1888)
...+..++..|++++|..++.++.......-...+ ...+.+...+|.++...|++++|..++++++..... .+...
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~ 489 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPL---TWYYS 489 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---ccHHH
Confidence 34566677889999999999998776433210112 223556677899999999999999999999875211 12222
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 976 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 1055 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~ 1055 (1888)
...++..+|.++...|++++|+.++.+++.+.... |..+ ....++.++|.++...|++++|..++++++.+.....+.
T Consensus 490 ~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~-g~~~-~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~ 567 (903)
T PRK04841 490 RIVATSVLGEVHHCKGELARALAMMQQTEQMARQH-DVYH-YALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLE 567 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh-cchH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc
Confidence 45677889999999999999999999999987753 4333 345678899999999999999999999999998776544
Q ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000191 1056 DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 1093 (1888)
Q Consensus 1056 d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk 1093 (1888)
..+..+.++..+|.++...|++++|..++++++.+...
T Consensus 568 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~ 605 (903)
T PRK04841 568 QLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSN 605 (903)
T ss_pred cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhc
Confidence 44445566778899999999999999999999988763
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.7e-09 Score=127.87 Aligned_cols=233 Identities=21% Similarity=0.246 Sum_probs=84.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 000191 897 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 976 (1888)
Q Consensus 897 lelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~t 976 (1888)
+.+|..++..|++++|++.+.+++... ..+.....|..+|.+...+++++.|+..|++.+..- +..
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~------~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--------~~~ 77 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKI------APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--------KAN 77 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccc--------ccc
Confidence 355888999999999999997765442 123344678889999999999999999999998752 224
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 977 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 1056 (1888)
Q Consensus 977 a~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d 1056 (1888)
...+.+|+.+ ...+++++|+.+++++.+-. .++. .+..+..++...++++++...++++... ..
T Consensus 78 ~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~------~~~~---~l~~~l~~~~~~~~~~~~~~~l~~~~~~------~~ 141 (280)
T PF13429_consen 78 PQDYERLIQL-LQDGDPEEALKLAEKAYERD------GDPR---YLLSALQLYYRLGDYDEAEELLEKLEEL------PA 141 (280)
T ss_dssp --------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-------T-
T ss_pred cccccccccc-cccccccccccccccccccc------cccc---hhhHHHHHHHHHhHHHHHHHHHHHHHhc------cC
Confidence 4556677777 68999999999988876531 1232 2344667788999999999999987742 12
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCchhhh
Q 000191 1057 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAAR-NGTRKPDASIA 1135 (1888)
Q Consensus 1057 ~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~-~~~~~~~~~~a 1135 (1888)
.......+..+|.++...|+.++|+..+++|++. .|++......+.|+. +..+..+.+..+. .... .
T Consensus 142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-----~P~~~~~~~~l~~~l-i~~~~~~~~~~~l~~~~~------~ 209 (280)
T PF13429_consen 142 APDSARFWLALAEIYEQLGDPDKALRDYRKALEL-----DPDDPDARNALAWLL-IDMGDYDEAREALKRLLK------A 209 (280)
T ss_dssp --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH------TT-HHHHHHHHHHH-CTTCHHHHHHHHHHHHHH------H
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHH-HHCCChHHHHHHHHHHHH------H
Confidence 2345667888999999999999999999999965 588888777766653 2233333222221 1100 0
Q ss_pred hcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000191 1136 SKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1136 s~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
....+ .++..+|.+|...|++++|+.+|+++++...
T Consensus 210 ~~~~~---~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 210 APDDP---DLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp -HTSC---CHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred CcCHH---HHHHHHHHHhccccccccccccccccccccc
Confidence 01111 2567889999999999999999999988654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.9e-09 Score=121.18 Aligned_cols=171 Identities=18% Similarity=0.223 Sum_probs=146.2
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
.+...+...|+++-..+++++|.++|+.++++ |+....+...+|.-|+.-++.+-|+.||++.|.+ |
T Consensus 288 ~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-----G 354 (478)
T KOG1129|consen 288 FDVTYLLGQARIHEAMEQQEDALQLYKLVLKL--------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-----G 354 (478)
T ss_pred chhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--------CCccceeeeeeeeccccCCChHHHHHHHHHHHHh-----c
Confidence 34566778889999999999999999999887 5555567777899999999999999999999998 6
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000191 971 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
..+| ..++|+|+|++..++++-++..|++|+.... +....+.+|+|||.+....|++..|.++|+-||..
T Consensus 355 ~~sp---eLf~NigLCC~yaqQ~D~~L~sf~RAlstat-----~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~-- 424 (478)
T KOG1129|consen 355 AQSP---ELFCNIGLCCLYAQQIDLVLPSFQRALSTAT-----QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS-- 424 (478)
T ss_pred CCCh---HHHhhHHHHHHhhcchhhhHHHHHHHHhhcc-----CcchhhhhhhccceeEEeccchHHHHHHHHHHhcc--
Confidence 5555 4689999999999999999999999998753 23456889999999999999999999999988743
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1051 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
+.+.+.++.|||.+-.+.|+..+|..++..|-..
T Consensus 425 ------d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 425 ------DAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred ------CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 4567889999999999999999999998877654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.1e-07 Score=107.26 Aligned_cols=250 Identities=19% Similarity=0.095 Sum_probs=153.7
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000191 889 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 968 (1888)
Q Consensus 889 ~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~ 968 (1888)
...++...+++|..++..|++.+|+..|..|++. +|....+++..|.+|..+|+-..|+.-+.+.|.+
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel---- 101 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL---- 101 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc----
Confidence 4455666777777777778888888777777754 3444444555555555555555555554444443
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHH-------------------------------------------------HH
Q 000191 969 LGLDHPDTMKSYGDLAVFYYRLQHTELAL-------------------------------------------------KY 999 (1888)
Q Consensus 969 lG~Dhp~ta~ay~nLA~ly~~lGdyeeAL-------------------------------------------------ey 999 (1888)
.|+...+...-|.++..+|++++|. ++
T Consensus 102 ----KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 102 ----KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred ----CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 2344444444445555555555544 44
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHH
Q 000191 1000 VKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPL 1079 (1888)
Q Consensus 1000 ~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdyde 1079 (1888)
..+.|++ .|..+..+...|.+|...|+...|+.-++.+-++. . .....++.++.+++..|+.+.
T Consensus 178 i~~llEi--------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-----~---DnTe~~ykis~L~Y~vgd~~~ 241 (504)
T KOG0624|consen 178 ITHLLEI--------QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-----Q---DNTEGHYKISQLLYTVGDAEN 241 (504)
T ss_pred HHHHHhc--------CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-----c---cchHHHHHHHHHHHhhhhHHH
Confidence 4444443 24445566667778888888888887777766653 1 234567888999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----------HhcCCC--Cc---------------
Q 000191 1080 SVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAA-----------RNGTRK--PD--------------- 1131 (1888)
Q Consensus 1080 Ale~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl-----------~~~~~~--~~--------------- 1131 (1888)
++.-.++++ .+.++|....-.+..|..+........++. .+.... +.
T Consensus 242 sL~~iRECL-----KldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C 316 (504)
T KOG0624|consen 242 SLKEIRECL-----KLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTC 316 (504)
T ss_pred HHHHHHHHH-----ccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeec
Confidence 999999988 457888776666655543332211111110 000000 00
Q ss_pred -------------hhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000191 1132 -------------ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1132 -------------~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
........++-.++|..-+.+|.....|+.|+.-|++|+++..+
T Consensus 317 ~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 317 YREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred ccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 00112233455678899999999999999999999999987655
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.1e-07 Score=107.18 Aligned_cols=240 Identities=13% Similarity=0.063 Sum_probs=178.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 000191 899 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK 978 (1888)
Q Consensus 899 lG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ 978 (1888)
.|..++-..+.++|+.+|.+.+.. ++.+..+...||.+|...|+.+.|+...+-.+.-- +.....-..
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~~--------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp----dlT~~qr~l 108 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQE--------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP----DLTFEQRLL 108 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHhc--------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC----CCchHHHHH
Confidence 456666778899999999988874 67778899999999999999999999887554410 111223457
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcH
Q 000191 979 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI 1058 (1888)
Q Consensus 979 ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~ 1058 (1888)
++..||.-|+..|-++.|+..|....+.- ...-.++-.|-.+|+...+|++|++..++..++-.+ ....
T Consensus 109 Al~qL~~Dym~aGl~DRAE~~f~~L~de~--------efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q---~~~~ 177 (389)
T COG2956 109 ALQQLGRDYMAAGLLDRAEDIFNQLVDEG--------EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ---TYRV 177 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhcch--------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc---cchh
Confidence 88899999999999999999998876531 112356777899999999999999988877766432 3456
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcC
Q 000191 1059 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKG 1138 (1888)
Q Consensus 1059 ~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~ 1138 (1888)
..|..|..||+.+....+++.|...+++|++. ++....+...++.+....++.+.+.... ..+...+
T Consensus 178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~~~~g~y~~AV~~~-----e~v~eQn 244 (389)
T COG2956 178 EIAQFYCELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVELAKGDYQKAVEAL-----ERVLEQN 244 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHHHhccchHHHHHHH-----HHHHHhC
Confidence 78999999999999999999999999999964 2333334444444444444443333211 1122344
Q ss_pred CccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000191 1139 HLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1139 ~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
+..+.+++..|..+|..+|+.++.+.++.++.+...
T Consensus 245 ~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 245 PEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 557788999999999999999999999999887553
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-07 Score=113.29 Aligned_cols=170 Identities=19% Similarity=0.185 Sum_probs=141.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 000191 897 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 976 (1888)
Q Consensus 897 lelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~t 976 (1888)
+-.+.++...|++++|+..--..+.+ ++..+.++..-|.+++..++.+.|+.+|+++|.+ +++|...
T Consensus 173 ~lka~cl~~~~~~~~a~~ea~~ilkl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l-----dpdh~~s 239 (486)
T KOG0550|consen 173 LLKAECLAFLGDYDEAQSEAIDILKL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRL-----DPDHQKS 239 (486)
T ss_pred HhhhhhhhhcccchhHHHHHHHHHhc--------ccchhHHHHhcccccccccchHHHHHHHhhhhcc-----ChhhhhH
Confidence 33467888899999998776666655 4556778888999999999999999999999987 6666655
Q ss_pred HHHH---------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 000191 977 MKSY---------GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP-NTAATYINVAMMEEGLGNVHVALRYLHKAL 1046 (1888)
Q Consensus 977 a~ay---------~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP-~~a~a~~NLA~iy~~lG~yeeAle~LekAL 1046 (1888)
-.++ -.-|.-.+..|+|.+|.++|..||.+- ++|. ..+..|.|.|.++.++|+..+|+.-++.|+
T Consensus 240 k~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id-----P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al 314 (486)
T KOG0550|consen 240 KSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID-----PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL 314 (486)
T ss_pred HhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC-----ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence 4444 345778899999999999999999863 3332 357889999999999999999999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 000191 1047 KCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 1092 (1888)
Q Consensus 1047 ei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~k 1092 (1888)
.+- ..+..+|+..|++|..+++|++|++.|++|++.-.
T Consensus 315 ~iD--------~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 315 KID--------SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred hcC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 884 45678899999999999999999999999997643
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.4e-07 Score=110.39 Aligned_cols=209 Identities=17% Similarity=0.078 Sum_probs=153.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..++.+|..+...|+.++|...+.++...... +..........|.+++..|++++|+.++++++..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~-------- 72 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAA-----RATERERAHVEALSAWIAGDLPKALALLEQLLDD-------- 72 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------
Confidence 445667788888899999998888887766432 2233456677899999999999999999999875
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
+|....++.. +..+...|++..+...+.+++.. ..+.+|.....+..+|.++..+|++++|+..+++++++.
T Consensus 73 ~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--- 144 (355)
T cd05804 73 YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--- 144 (355)
T ss_pred CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---
Confidence 3433444444 66677777776666666666553 346788888888899999999999999999999999874
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDA 1132 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~ 1132 (1888)
++ ...+++.+|.+|...|++++|+.++++++..... ++.
T Consensus 145 --p~---~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~-----~~~------------------------------- 183 (355)
T cd05804 145 --PD---DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC-----SSM------------------------------- 183 (355)
T ss_pred --CC---CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-----Ccc-------------------------------
Confidence 22 2566788999999999999999999888754311 000
Q ss_pred hhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000191 1133 SIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 1171 (1888)
Q Consensus 1133 ~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALe 1171 (1888)
.....+..++.++..+|++++|+.+|++++.
T Consensus 184 --------~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 184 --------LRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred --------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 1112355667777778888888888877743
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.6e-08 Score=104.07 Aligned_cols=110 Identities=16% Similarity=0.149 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC
Q 000191 913 VTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH 992 (1888)
Q Consensus 913 ie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGd 992 (1888)
..+|++++++ +|.. +..+|.++..+|++++|+.+|++++.+ .|....++.++|.++..+|+
T Consensus 13 ~~~~~~al~~--------~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~ 73 (144)
T PRK15359 13 EDILKQLLSV--------DPET---VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKE 73 (144)
T ss_pred HHHHHHHHHc--------CHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhh
Confidence 4567888776 3442 557899999999999999999999876 56778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 993 TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 993 yeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
+++|+.+|.+|+.+ .|....+++++|.+|..+|++++|+..|++|+++.
T Consensus 74 ~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 74 YTTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999985 35566789999999999999999999999999875
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.6e-07 Score=123.53 Aligned_cols=170 Identities=15% Similarity=0.044 Sum_probs=141.1
Q ss_pred HHHHHHHHH-HHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 893 GRQLLESSK-TALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 893 A~~LlelG~-~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
++.++.+++ +.-..|....+.+.+-+++.+... .+..+.++.+||.+...+|.+++|+.+++.++++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~------- 115 (694)
T PRK15179 48 GRELLQQARQVLERHAAVHKPAAALPELLDYVRR-----YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR------- 115 (694)
T ss_pred HHHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHh-----ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-------
Confidence 344444442 333446666666666666666544 3555789999999999999999999999999997
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
.|+...+..++|.++.+++++++|+..+++++.. .|+.+..++.+|.++..+|+|++|+.+|+++++.
T Consensus 116 -~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--- 183 (694)
T PRK15179 116 -FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--- 183 (694)
T ss_pred -CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc---
Confidence 4778899999999999999999999999999975 4677888999999999999999999999999872
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000191 1052 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
++....++..+|.++..+|+.++|...|++|++.+
T Consensus 184 -----~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 184 -----HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred -----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 34556788889999999999999999999999765
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.1e-08 Score=106.39 Aligned_cols=131 Identities=15% Similarity=0.061 Sum_probs=107.6
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 000191 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G 1054 (1888)
..+.+++++|.++..+|++++|+.+|++|+.+. +++...+.++.++|.+|...|++++|+.+|++|+.+.... +
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~-~ 106 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL-P 106 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-H
Confidence 456788999999999999999999999999863 3455667799999999999999999999999999874322 2
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000191 1055 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY 1111 (1888)
Q Consensus 1055 ~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~ 1111 (1888)
..+...+.++.++|..+..+|+++.|+.++++|+.++++.++.++..+.....|+..
T Consensus 107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~ 163 (168)
T CHL00033 107 QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKI 163 (168)
T ss_pred HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 223445566666666666999999999999999999999999998777777766654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.1e-07 Score=117.81 Aligned_cols=182 Identities=17% Similarity=0.128 Sum_probs=152.3
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--
Q 000191 889 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE-- 966 (1888)
Q Consensus 889 ~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~E-- 966 (1888)
....++....+|.+....++-..|+..+++|+++ +|....++..||..|...|.-.+|+.++.+=|...-
T Consensus 315 dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y 386 (579)
T KOG1125|consen 315 DPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKY 386 (579)
T ss_pred ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccc
Confidence 4455777888899999999999999999999987 677778999999999999999999988877544320
Q ss_pred ---H------hcC----CC------------------Ch--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 967 ---R------ELG----LD------------------HP--DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 1013 (1888)
Q Consensus 967 ---r------~lG----~D------------------hp--~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~ 1013 (1888)
+ ..+ .. ++ .-...+..||.+|+..|+|++|+.+|+.||..
T Consensus 387 ~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v------- 459 (579)
T KOG1125|consen 387 VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV------- 459 (579)
T ss_pred hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc-------
Confidence 0 000 00 11 22356788999999999999999999999974
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000191 1014 SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 1093 (1888)
Q Consensus 1014 dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk 1093 (1888)
.|....+++.||..+..-.+.++|+..|++||++. |.+..+.+|||..|..+|.|++|+.||-.|+.+.++
T Consensus 460 -~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--------P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 460 -KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--------PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred -CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--------CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 57778899999999999999999999999999984 667889999999999999999999999999999876
Q ss_pred h
Q 000191 1094 K 1094 (1888)
Q Consensus 1094 ~ 1094 (1888)
.
T Consensus 531 s 531 (579)
T KOG1125|consen 531 S 531 (579)
T ss_pred c
Confidence 3
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.8e-06 Score=108.20 Aligned_cols=251 Identities=12% Similarity=-0.001 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...++-.|+.+..+|+++.|..++.++.+.. +++. ..+...++.++...|++++|+..+++.+..
T Consensus 118 ~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~-----p~~~--l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~-------- 182 (409)
T TIGR00540 118 VLNLIKAAEAAQQRGDEARANQHLEEAAELA-----GNDN--ILVEIARTRILLAQNELHAARHGVDKLLEM-------- 182 (409)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CcCc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------
Confidence 3445566889999999999999999987542 1211 123445699999999999999998888775
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------HHH-h--------------cCCCCh----hH
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL---------------LHL-T--------------CGPSHP----NT 1018 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL---------------~~k-i--------------~G~dhP----~~ 1018 (1888)
+|....++..++.+|...|++++|++++.+.++. +.. . .....| ..
T Consensus 183 ~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~ 262 (409)
T TIGR00540 183 APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHN 262 (409)
T ss_pred CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCC
Confidence 3445567888999999999999998887776632 000 0 001122 24
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 000191 1019 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPD 1098 (1888)
Q Consensus 1019 a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~d 1098 (1888)
...+..+|..+...|++++|+..++++++.. ++........ .....+...++...++..++++++. .++
T Consensus 263 ~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-----pd~~~~~~~~-l~~~~~l~~~~~~~~~~~~e~~lk~-----~p~ 331 (409)
T TIGR00540 263 IALKIALAEHLIDCDDHDSAQEIIFDGLKKL-----GDDRAISLPL-CLPIPRLKPEDNEKLEKLIEKQAKN-----VDD 331 (409)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----CCcccchhHH-HHHhhhcCCCChHHHHHHHHHHHHh-----CCC
Confidence 5667778889999999999999999998864 3332211011 1122233357777787777777643 577
Q ss_pred CH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhccc
Q 000191 1099 DL--RTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 1176 (1888)
Q Consensus 1099 h~--~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi 1176 (1888)
++ ....++.|+. +..+.++.++.+.+...... ..+.. +.+..+|.++..+|+.++|.++|++++...-.+
T Consensus 332 ~~~~~ll~sLg~l~-~~~~~~~~A~~~le~a~a~~------~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~ 403 (409)
T TIGR00540 332 KPKCCINRALGQLL-MKHGEFIEAADAFKNVAACK------EQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSLGLMLAI 403 (409)
T ss_pred ChhHHHHHHHHHHH-HHcccHHHHHHHHHHhHHhh------cCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence 77 7777888876 45555665555444211100 01122 235588999999999999999999999887776
Q ss_pred c
Q 000191 1177 Y 1177 (1888)
Q Consensus 1177 ~ 1177 (1888)
.
T Consensus 404 ~ 404 (409)
T TIGR00540 404 Q 404 (409)
T ss_pred c
Confidence 5
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.6e-06 Score=109.95 Aligned_cols=177 Identities=17% Similarity=0.195 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.++.++..|..++..|++++|+..+.+++.+ .|....+|+.||.+|.++|+.++|+.....|-.+
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL------- 202 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQ--------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL------- 202 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-------
Confidence 3677888889999999999999999999987 5666789999999999999999999888777554
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
.|.....+..+|.....+|++++|.-||.+|+.+ .|.....+...+.+|.++|++..|++.|.+++...-
T Consensus 203 -~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~--------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p- 272 (895)
T KOG2076|consen 203 -NPKDYELWKRLADLSEQLGNINQARYCYSRAIQA--------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP- 272 (895)
T ss_pred -CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-
Confidence 2333367788999999999999999999999985 345567778899999999999999999999988752
Q ss_pred hcCCCcH-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 000191 1052 LLGPDHI-QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 1096 (1888)
Q Consensus 1052 ~~G~d~~-~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG 1096 (1888)
+.+. ..-......+..+...++-+.|++.+..++..-....+
T Consensus 273 ---~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~ 315 (895)
T KOG2076|consen 273 ---PVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEAS 315 (895)
T ss_pred ---chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccccc
Confidence 1122 22333445577788888778888888888774333333
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.1e-06 Score=109.74 Aligned_cols=238 Identities=9% Similarity=-0.052 Sum_probs=160.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000191 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMT-AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 974 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~-A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp 974 (1888)
++..+.....+|+++.|..++.++.+. .++. .......+.++...|++++|+..+++.++. .|
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~--------~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P 184 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAEL--------ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEV--------AP 184 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CC
Confidence 445567779999999999999999765 2221 122234489999999999999999998775 35
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-------------------HHh---------------cCCCChhHHH
Q 000191 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLL-------------------HLT---------------CGPSHPNTAA 1020 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~-------------------~ki---------------~G~dhP~~a~ 1020 (1888)
....++..++.+|...|++++|++.+.+..... ... .....+....
T Consensus 185 ~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~ 264 (398)
T PRK10747 185 RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVA 264 (398)
T ss_pred CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHH
Confidence 556778888999999999999997766655310 000 0011233344
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCH
Q 000191 1021 TYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDL 1100 (1888)
Q Consensus 1021 a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~ 1100 (1888)
+...+|..+...|+.++|...++++++. +.++..+..+ +. ...++++++++.+++.++. .++++
T Consensus 265 ~~~~~A~~l~~~g~~~~A~~~L~~~l~~------~~~~~l~~l~---~~--l~~~~~~~al~~~e~~lk~-----~P~~~ 328 (398)
T PRK10747 265 LQVAMAEHLIECDDHDTAQQIILDGLKR------QYDERLVLLI---PR--LKTNNPEQLEKVLRQQIKQ-----HGDTP 328 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCHHHHHHH---hh--ccCCChHHHHHHHHHHHhh-----CCCCH
Confidence 5667788889999999999999888863 2333332222 22 2348888888887766632 46777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000191 1101 RTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1101 ~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
....+...+. +..+.+..++...+...... ++ ...+..++.++..+|+.++|..+|++++.+...
T Consensus 329 ~l~l~lgrl~-~~~~~~~~A~~~le~al~~~--------P~-~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~ 393 (398)
T PRK10747 329 LLWSTLGQLL-MKHGEWQEASLAFRAALKQR--------PD-AYDYAWLADALDRLHKPEEAAAMRRDGLMLTLQ 393 (398)
T ss_pred HHHHHHHHHH-HHCCCHHHHHHHHHHHHhcC--------CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Confidence 6655555553 34444555554443322111 12 234668999999999999999999999987643
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.5e-07 Score=121.72 Aligned_cols=134 Identities=10% Similarity=0.022 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
++..++.+|.+....|.+++|+.+++.++++ .|+...++.++|.++.+++++++|+..+++++..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~------- 149 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG------- 149 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-------
Confidence 4677888899999999999999999999988 5777889999999999999999999999999986
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
.|+.+.+++.+|.++..+|+|++|+.+|++++. .||+...++.++|.++..+|+.++|...|++|++..
T Consensus 150 -~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 150 -GSSSAREILLEAKSWDEIGQSEQADACFERLSR--------QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred -CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 577888999999999999999999999999986 257777889999999999999999999999999875
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.2e-06 Score=107.45 Aligned_cols=245 Identities=13% Similarity=-0.002 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
..+...+..|...+..|+++.|.+.+.++.+. .+.-...+...|.++..+|+++.|..++.++.+..
T Consensus 82 ~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~--------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~----- 148 (409)
T TIGR00540 82 RKAQKQTEEALLKLAEGDYAKAEKLIAKNADH--------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA----- 148 (409)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----
Confidence 34677788899999999999999999887664 23334566778999999999999999999987542
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
Q 000191 971 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC-- 1048 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei-- 1048 (1888)
+++. .......+.++...|++++|+..+++.++. .++|+ .++..++.+|...|+|++|++.+.+.++.
T Consensus 149 p~~~--l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~-----~P~~~---~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~ 218 (409)
T TIGR00540 149 GNDN--ILVEIARTRILLAQNELHAARHGVDKLLEM-----APRHK---EVLKLAEEAYIRSGAWQALDDIIDNMAKAGL 218 (409)
T ss_pred CcCc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 1111 123344589999999999999999988874 35555 55677899999999999999888777642
Q ss_pred -----H--------HHhc---------------CCCcH----HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 000191 1049 -----N--------QRLL---------------GPDHI----QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 1096 (1888)
Q Consensus 1049 -----~--------ek~~---------------G~d~~----~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG 1096 (1888)
. ...+ -...+ .....+..+|..+...|++++|+..++++++..
T Consensus 219 ~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~----- 293 (409)
T TIGR00540 219 FDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL----- 293 (409)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----
Confidence 0 0000 00011 234667778899999999999999999998642
Q ss_pred CCCHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHH--HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000191 1097 PDDLRTQ-DAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVS--DLLDYINPSHDTKGRNVSTLKRKTYVAK 1171 (1888)
Q Consensus 1097 ~dh~~tl-~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~sva--elL~~Lg~~y~~qGdyeEAleyyeKALe 1171 (1888)
+++.... .....+..+..+....+....+.. ...++.-. .++..+|.++...|++++|.+||+++..
T Consensus 294 pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~--------lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a 363 (409)
T TIGR00540 294 GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQ--------AKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA 363 (409)
T ss_pred CCcccchhHHHHHhhhcCCCChHHHHHHHHHH--------HHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH
Confidence 3333211 111111122212222222111111 11122223 6788999999999999999999995443
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.2e-07 Score=101.97 Aligned_cols=122 Identities=14% Similarity=0.059 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 933 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 1012 (1888)
Q Consensus 933 e~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G 1012 (1888)
..+.++..+|.++..+|++++|+.++++|+.+. .++.....++.+||.+|...|++++|+.+|++|+.+... .+
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~ 106 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LP 106 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cH
Confidence 357789999999999999999999999999873 345556779999999999999999999999999986221 11
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 000191 1013 PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT 1060 (1888)
Q Consensus 1013 ~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~t 1060 (1888)
..+..++.++.++|..+..+|++++|+.++++|+..+++.++.++..+
T Consensus 107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 107 QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 112233344444444444999999999999999999999888776544
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.3e-07 Score=112.09 Aligned_cols=166 Identities=27% Similarity=0.275 Sum_probs=98.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000191 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 975 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ 975 (1888)
+......+...|+++++..++.++... ...+.....+..+|.++...|++++|+..+++|+.. .|+
T Consensus 113 l~~~l~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~P~ 178 (280)
T PF13429_consen 113 LLSALQLYYRLGDYDEAEELLEKLEEL------PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--------DPD 178 (280)
T ss_dssp -----H-HHHTT-HHHHHHHHHHHHH-------T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHhc------cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCC
Confidence 334456677888888888888886642 122344667888899999999999999999999887 344
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 976 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 1055 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~ 1055 (1888)
...+...|+.++...|+++++.+.+....... +.+|. .+..+|.+|..+|++++|+.+|+++++.. +
T Consensus 179 ~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-----~~~~~---~~~~la~~~~~lg~~~~Al~~~~~~~~~~-----p 245 (280)
T PF13429_consen 179 DPDARNALAWLLIDMGDYDEAREALKRLLKAA-----PDDPD---LWDALAAAYLQLGRYEEALEYLEKALKLN-----P 245 (280)
T ss_dssp -HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------HTSCC---HCHHHHHHHHHHT-HHHHHHHHHHHHHHS-----T
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-----cCHHH---HHHHHHHHhcccccccccccccccccccc-----c
Confidence 45566778888888888888777666655542 22333 34567888889999999999999888753 3
Q ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000191 1056 DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1056 d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
+ ....+..+|.++...|++++|..++++++...
T Consensus 246 ~---d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l 278 (280)
T PF13429_consen 246 D---DPLWLLAYADALEQAGRKDEALRLRRQALRLL 278 (280)
T ss_dssp T----HHHHHHHHHHHT-------------------
T ss_pred c---cccccccccccccccccccccccccccccccc
Confidence 3 34456677889999999999988888887543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.4e-06 Score=106.84 Aligned_cols=244 Identities=16% Similarity=0.050 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
..+...+..|...+..|++++|++...++-.. .++|. ..+...+.+...+|+++.|..++++|....
T Consensus 82 ~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~------~~~p~--l~~llaA~aA~~~g~~~~A~~~l~~A~~~~----- 148 (398)
T PRK10747 82 RRARKQTEQALLKLAEGDYQQVEKLMTRNADH------AEQPV--VNYLLAAEAAQQRGDEARANQHLERAAELA----- 148 (398)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc------ccchH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----
Confidence 34677788899999999999999776664332 12232 224444666699999999999999997642
Q ss_pred CCChhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 971 LDHPDT-MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 971 ~Dhp~t-a~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
++. .......+.++...|++++|+.+++++++. .++|+ .++..++.+|...|+|++|+..+.+..+..
T Consensus 149 ---~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~-----~P~~~---~al~ll~~~~~~~gdw~~a~~~l~~l~k~~ 217 (398)
T PRK10747 149 ---DNDQLPVEITRVRIQLARNENHAARHGVDKLLEV-----APRHP---EVLRLAEQAYIRTGAWSSLLDILPSMAKAH 217 (398)
T ss_pred ---CcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence 222 222334589999999999999999998874 35555 556668999999999999997776655310
Q ss_pred -------------------HHh---------------cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 000191 1050 -------------------QRL---------------LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL 1095 (1888)
Q Consensus 1050 -------------------ek~---------------~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~L 1095 (1888)
... .....+....+...+|..+...|+.++|...++++++.
T Consensus 218 ~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~----- 292 (398)
T PRK10747 218 VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR----- 292 (398)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----
Confidence 000 00011223345667799999999999999999888751
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000191 1096 GPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1096 G~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
+.|+.....+.. +..+..+.+....+. ..+.++.-.+++..+|.++...|++.+|..+|++++++..+
T Consensus 293 -~~~~~l~~l~~~---l~~~~~~~al~~~e~--------~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 293 -QYDERLVLLIPR---LKTNNPEQLEKVLRQ--------QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD 360 (398)
T ss_pred -CCCHHHHHHHhh---ccCCChHHHHHHHHH--------HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 334433332222 222232322222111 11223344567899999999999999999999999987544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.2e-07 Score=101.18 Aligned_cols=120 Identities=18% Similarity=0.234 Sum_probs=104.0
Q ss_pred cCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 000191 906 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 985 (1888)
Q Consensus 906 qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ 985 (1888)
.++.++++..+++++.. +|.....|..||.+|..+|++++|+..|++|+.+ .|+....+.++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~ 115 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALAT 115 (198)
T ss_pred chhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 46678888888888876 5677789999999999999999999999999997 4566788899999
Q ss_pred HH-HHcCC--HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 986 FY-YRLQH--TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 986 ly-~~lGd--yeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
++ ...|+ +++|...+++++.+ +|....+++++|.++..+|+|++|+.+|++++++.
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~--------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALAL--------DANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 74 67787 59999999999985 45556788999999999999999999999999875
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.7e-06 Score=97.63 Aligned_cols=173 Identities=13% Similarity=0.118 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...++++|+-|+..|-++.|+..|....+. ....-.++..|..+|....++++|++..++.+.+-.+ ..
T Consensus 107 ~lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q---~~ 175 (389)
T COG2956 107 LLALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ---TY 175 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc---cc
Confidence 567889999999999999999999887653 1122368899999999999999999988887776322 12
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
....+..|+.||..+....+.+.|...+.+|+.. +|....+-..+|.++...|+|+.|++.++.+++-
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ---- 243 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ---- 243 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHHHhccchHHHHHHHHHHHHh----
Confidence 4567899999999999999999999999999985 4555666777999999999999999999988875
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
++..+..++..|..+|..+|+.++.+.++.++.+.+
T Consensus 244 ---n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 244 ---NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred ---ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 344567788889999999999999999999988764
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.3e-06 Score=107.75 Aligned_cols=234 Identities=17% Similarity=0.117 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+...-++|...+...+|..|++.|..++.+. .....+.+.|.+|+.+|.+.+.+....+|++.-.... .
T Consensus 223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~---------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r-a 292 (539)
T KOG0548|consen 223 KAHKEKELGNAAYKKKDFETAIQHYAKALELA---------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELR-A 292 (539)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh---------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHH-H
Confidence 46667788899999999999999999999984 2345678899999999999999999999887643321 2
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
+.-.++.++..+|..|..+++++.|+.+|++++.-.+. ..++..+...++++...+...-+
T Consensus 293 d~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt----------------~~~ls~lk~~Ek~~k~~e~~a~~--- 353 (539)
T KOG0548|consen 293 DYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT----------------PDLLSKLKEAEKALKEAERKAYI--- 353 (539)
T ss_pred HHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC----------------HHHHHHHHHHHHHHHHHHHHHhh---
Confidence 23335677777899999999999999999998875322 12222222233333322221111
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 000191 1052 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD 1131 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~ 1131 (1888)
.+..+.-...-|..++..|+|..|+.+|.+|+.. .|++... .+...+.++.. +....++...
T Consensus 354 -----~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr-----~P~Da~l-YsNRAac~~kL--~~~~~aL~Da----- 415 (539)
T KOG0548|consen 354 -----NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR-----DPEDARL-YSNRAACYLKL--GEYPEALKDA----- 415 (539)
T ss_pred -----ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc-----CCchhHH-HHHHHHHHHHH--hhHHHHHHHH-----
Confidence 1222333333455556666666666666655422 2333322 11112222222 2222222110
Q ss_pred hhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 000191 1132 ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 1173 (1888)
Q Consensus 1132 ~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~ 1173 (1888)
......++.....|..-|.++..+.+|++|++.|++++++.
T Consensus 416 -~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 416 -KKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred -HHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 00111133444556666666677777777777777777654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.8e-07 Score=107.51 Aligned_cols=124 Identities=25% Similarity=0.313 Sum_probs=107.0
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000191 889 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 968 (1888)
Q Consensus 889 ~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~ 968 (1888)
....|..|-..|..++..++|.+|+..|.+||.+ .|..+..|.+.|.+|.++|+|+.|++-++.||.+
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i---- 144 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI---- 144 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc----
Confidence 4567899999999999999999999999999987 6777889999999999999999999999999998
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH
Q 000191 969 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH 1036 (1888)
Q Consensus 969 lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~ye 1036 (1888)
+|....+|..||.+|..+|++++|++.|++||++ .|+......+|.++-..+++..
T Consensus 145 ----Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel--------dP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 145 ----DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL--------DPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ----ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc--------CCCcHHHHHHHHHHHHHhcCCC
Confidence 6888999999999999999999999999999986 3444455556666555554443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.3e-07 Score=99.92 Aligned_cols=111 Identities=14% Similarity=0.017 Sum_probs=94.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000191 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 975 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ 975 (1888)
++.+|..+...|++++|+.+|++++.+ .|....++..+|.++..+|++++|+..|++|+.+ .|.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--------~p~ 90 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--------DAS 90 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCC
Confidence 556789999999999999999999876 5667789999999999999999999999999986 466
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 000191 976 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE 1030 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~ 1030 (1888)
...+++++|.++..+|++++|+..|.+|+.+ . |+....+.++|.+..
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~-----~---p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKM-----S---YADASWSEIRQNAQI 137 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C---CCChHHHHHHHHHHH
Confidence 7889999999999999999999999999986 2 333444555665544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.4e-07 Score=108.64 Aligned_cols=268 Identities=16% Similarity=0.075 Sum_probs=180.1
Q ss_pred hccchhhhcccHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHH
Q 000191 879 LVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQ 958 (1888)
Q Consensus 879 l~PvvK~~~~~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~ 958 (1888)
+.|..........++..+...|..++.+.+|.+|+..|..|+.+ .|..+..|.+-+.+|+..|+|++|+-.+
T Consensus 35 ~~~~~s~~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~--------~pd~a~yy~nRAa~~m~~~~~~~a~~da 106 (486)
T KOG0550|consen 35 TSPEYSFSQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDM--------CPDNASYYSNRAATLMMLGRFEEALGDA 106 (486)
T ss_pred cCccccccchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHh--------CccchhhhchhHHHHHHHHhHhhcccch
Confidence 33444444555677889999999999999999999999999988 3445788999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH--------HHHHHHhcCC--CChhHHHHHHHHHHH
Q 000191 959 QKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRA--------LYLLHLTCGP--SHPNTAATYINVAMM 1028 (1888)
Q Consensus 959 eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kA--------LeL~~ki~G~--dhP~~a~a~~NLA~i 1028 (1888)
++.+.+ .+.....+..++.++..+++..+|.++|+.. +.....+... ..|........-+.+
T Consensus 107 r~~~r~--------kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~c 178 (486)
T KOG0550|consen 107 RQSVRL--------KDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAEC 178 (486)
T ss_pred hhheec--------CCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhh
Confidence 998876 2334456677777887777777777666521 1111111111 124455555667889
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 000191 1029 EEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAW 1108 (1888)
Q Consensus 1029 y~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~ 1108 (1888)
+..+|++++|+..--..+++. ...+.+++.-|.+++..++.+.|+.++++++ .++++|.....+...
T Consensus 179 l~~~~~~~~a~~ea~~ilkld--------~~n~~al~vrg~~~yy~~~~~ka~~hf~qal-----~ldpdh~~sk~~~~~ 245 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLD--------ATNAEALYVRGLCLYYNDNADKAINHFQQAL-----RLDPDHQKSKSASMM 245 (486)
T ss_pred hhhcccchhHHHHHHHHHhcc--------cchhHHHHhcccccccccchHHHHHHHhhhh-----ccChhhhhHHhHhhh
Confidence 999999999988655555442 3455667777999999999999999999999 458888877766555
Q ss_pred HHHHHHH-----------HHHHHHHHHhcCCCCc------------------------------hhhhhcCCccHHHHHH
Q 000191 1109 LEYFESK-----------AFEQQEAARNGTRKPD------------------------------ASIASKGHLSVSDLLD 1147 (1888)
Q Consensus 1109 La~L~qk-----------a~e~AeAl~~~~~~~~------------------------------~~~as~~~~svaelL~ 1147 (1888)
...+... .+..+...+.....++ ...+..-..+....|.
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall 325 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALL 325 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHH
Confidence 4443221 1111111111111110 1111222234455666
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000191 1148 YINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1148 ~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
.-|.++...+++++|.++|++++++..+
T Consensus 326 ~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 326 RRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 6677777777777777777777776655
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.58 E-value=9.9e-06 Score=103.36 Aligned_cols=251 Identities=18% Similarity=0.102 Sum_probs=176.1
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000191 889 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 968 (1888)
Q Consensus 889 ~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~ 968 (1888)
...+-..+|+++..|..+++++.|..+.++++++- ..+.+.+|..||.++..++++.+|+.....|+.-....
T Consensus 474 d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~-------~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N 546 (799)
T KOG4162|consen 474 DPTDPLVIFYLALQYAEQRQLTSALDYAREALALN-------RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN 546 (799)
T ss_pred CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhc-------CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh
Confidence 33445678889999999999999999999999872 23446799999999999999999999999998765432
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--------------------------------------
Q 000191 969 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT-------------------------------------- 1010 (1888)
Q Consensus 969 lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki-------------------------------------- 1010 (1888)
++.. ..- ..+-...++.++|+..+.+.+.+|+..
T Consensus 547 ~~l~-----~~~---~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~ 618 (799)
T KOG4162|consen 547 HVLM-----DGK---IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS 618 (799)
T ss_pred hhhc-----hhh---hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence 2111 111 111222455555555555555555510
Q ss_pred ---------------------cCCCChhH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 000191 1011 ---------------------CGPSHPNT--AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAI 1067 (1888)
Q Consensus 1011 ---------------------~G~dhP~~--a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nL 1067 (1888)
-|++|+.. ...+...|..+...++-++|.-++.+|-.++ +..+..|+..
T Consensus 619 l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~--------~l~~~~~~~~ 690 (799)
T KOG4162|consen 619 LVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID--------PLSASVYYLR 690 (799)
T ss_pred HHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc--------hhhHHHHHHh
Confidence 01222221 2344566778888889999999999998775 4567888999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCCCchhhhhcCCccHHHH
Q 000191 1068 AIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEA--ARNGTRKPDASIASKGHLSVSDL 1145 (1888)
Q Consensus 1068 A~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeA--l~~~~~~~~~~~as~~~~svael 1145 (1888)
|..+...|++.+|.+.|..|+. +.|+|...+.+..-+ ++..+....++. +...+ ..-.+..-++
T Consensus 691 G~~~~~~~~~~EA~~af~~Al~-----ldP~hv~s~~Ala~~-lle~G~~~la~~~~~L~da--------lr~dp~n~ea 756 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVALA-----LDPDHVPSMTALAEL-LLELGSPRLAEKRSLLSDA--------LRLDPLNHEA 756 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHHHh-----cCCCCcHHHHHHHHH-HHHhCCcchHHHHHHHHHH--------HhhCCCCHHH
Confidence 9999999999999999999984 479998877766544 233332222222 21111 1112244578
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhccc
Q 000191 1146 LDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 1176 (1888)
Q Consensus 1146 L~~Lg~~y~~qGdyeEAleyyeKALeL~dSi 1176 (1888)
++++|.++..+|+.++|.++|.-|+++-++.
T Consensus 757 W~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 757 WYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 9999999999999999999999999998774
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.3e-06 Score=99.17 Aligned_cols=120 Identities=17% Similarity=0.180 Sum_probs=102.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 000191 948 TGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAM 1027 (1888)
Q Consensus 948 lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~ 1027 (1888)
.++.++++..+++++.. +|+....+..||.+|..+|++++|+..|.+|+.+ .|+...++.++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~ 115 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALAT 115 (198)
T ss_pred chhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 67778888899988886 5677889999999999999999999999999986 3555677888999
Q ss_pred HH-HHCCC--HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000191 1028 ME-EGLGN--VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1028 iy-~~lG~--yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
++ ...|+ +++|+.++++++++. +....++++||.++...|+|++|+.++++++++.
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~d--------P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALALD--------ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhC--------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 74 67787 599999999999873 3455788999999999999999999999998653
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.9e-06 Score=93.03 Aligned_cols=170 Identities=18% Similarity=0.232 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+..++..|..++..|+|.+|+..|++.+..+ +.++....+...+|.+|+..|++++|+..+++-+..+ +
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P 73 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----P 73 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----C
Confidence 46789999999999999999999999998774 5677888899999999999999999999999998864 6
Q ss_pred CChhhHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHHhcCCCChhH--------------HHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQ-----------HTELALKYVKRALYLLHLTCGPSHPNT--------------AATYINVA 1026 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lG-----------dyeeALey~~kALeL~~ki~G~dhP~~--------------a~a~~NLA 1026 (1888)
+|+....+++.+|.+++.+. ...+|+..|+..+..+ ++.+.. +.--..+|
T Consensus 74 ~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-----P~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 74 NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-----PNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-----cCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888899999999877653 2346666666666542 333322 23345678
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHH
Q 000191 1027 MMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSV 1081 (1888)
Q Consensus 1027 ~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAl 1081 (1888)
..|...|.|..|+..++.+++-+ ++.+....++..|+.+|..+|..+.|.
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 89999999999999999988876 677888889999999999999988554
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.6e-06 Score=105.28 Aligned_cols=198 Identities=21% Similarity=0.192 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH---
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER--- 967 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er--- 967 (1888)
.+...+.+.|.+|+..|.+.+.+..+..+++.-.... .+...++.++..+|..|..+++++.|+.+|++++.-.+.
T Consensus 255 ~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r-ad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ 333 (539)
T KOG0548|consen 255 TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELR-ADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL 333 (539)
T ss_pred hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHH-HHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH
Confidence 3445556667777777888777777777766533221 112236777778999999999999999999998875433
Q ss_pred ---------hc------CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC
Q 000191 968 ---------EL------GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL 1032 (1888)
Q Consensus 968 ---------~l------G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~l 1032 (1888)
.. .--.|..+..-..-|..++..|+|..|+.+|.+|+.. .|+.+..|.|.|.+|..+
T Consensus 334 ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL 405 (539)
T KOG0548|consen 334 LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKL 405 (539)
T ss_pred HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHH
Confidence 10 0113344444556699999999999999999998873 488899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000191 1033 GNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF 1112 (1888)
Q Consensus 1033 G~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L 1112 (1888)
|++..|+..++.++++ ++.....|..-|.++..+.+|++|++.|+++++. ++...++..++...
T Consensus 406 ~~~~~aL~Da~~~ieL--------~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--------dp~~~e~~~~~~rc 469 (539)
T KOG0548|consen 406 GEYPEALKDAKKCIEL--------DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--------DPSNAEAIDGYRRC 469 (539)
T ss_pred hhHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CchhHHHHHHHHHH
Confidence 9999999999998887 4667888999999999999999999999999854 35555566655544
Q ss_pred H
Q 000191 1113 E 1113 (1888)
Q Consensus 1113 ~ 1113 (1888)
.
T Consensus 470 ~ 470 (539)
T KOG0548|consen 470 V 470 (539)
T ss_pred H
Confidence 3
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.6e-06 Score=93.04 Aligned_cols=127 Identities=16% Similarity=0.121 Sum_probs=102.6
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
.++..+.+++++|.+|...|++++|+.+|++++.+. ++++....++.++|.+|..+|++++|+.+|++++.+.
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 102 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-- 102 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 455677889999999999999999999999999863 3344556789999999999999999999999999873
Q ss_pred hcCCCcHHHHHHHHHHHHHHHH-------cCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000191 1052 LLGPDHIQTAASYHAIAIALSL-------MEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY 1111 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~-------lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~ 1111 (1888)
+.....+..+|.+|.. .++++.|+..+++|++++++.+..++.....+..|+..
T Consensus 103 ------p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 163 (172)
T PRK02603 103 ------PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLKT 163 (172)
T ss_pred ------cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHh
Confidence 2234455566666655 45688899999999999998888777777777777754
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.6e-06 Score=90.95 Aligned_cols=103 Identities=23% Similarity=0.221 Sum_probs=91.1
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000191 931 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010 (1888)
Q Consensus 931 hpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki 1010 (1888)
+|.....+..+|.++...|++++|+.++++++.+ ++.....+.++|.+|..+|++++|+.++++++.+
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---- 80 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL---- 80 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 5666678899999999999999999999998875 3556788999999999999999999999999875
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 1011 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1011 ~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
+|.....++++|.+|...|++++|+.+|++++++.
T Consensus 81 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 81 ----DPDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred ----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 35567778999999999999999999999999874
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.3e-06 Score=99.24 Aligned_cols=250 Identities=14% Similarity=0.086 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...+..+|.+++..|++++|+..|++++-+ +|.....+-..|.++.+.|+++.-..+-...+.+..
T Consensus 232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~------ 297 (564)
T KOG1174|consen 232 EHLMMALGKCLYYNGDYFQAEDIFSSTLCA--------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK------ 297 (564)
T ss_pred HHHHHHHhhhhhhhcCchHHHHHHHHHhhC--------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh------
Confidence 345667789999999999999999998765 677788888899999999999876665555544421
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
.++.-+.--+...+..++|..|+.+..+++.. .+.....|..-|.++..+|+.++|+-.|+.|..+.
T Consensus 298 --~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La--- 364 (564)
T KOG1174|consen 298 --YTASHWFVHAQLLYDEKKFERALNFVEKCIDS--------EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA--- 364 (564)
T ss_pred --cchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--------CcccchHHHhccHHHHhccchHHHHHHHHHHHhcc---
Confidence 22333444566677888999999999998875 23334566778999999999999999999888764
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH------hcCC----CCHHHHHHHHHHH--HH-----HHH
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA------KLGP----DDLRTQDAAAWLE--YF-----ESK 1115 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk------~LG~----dh~~tl~a~~~La--~L-----~qk 1115 (1888)
|....+|..|-..|...|.+++|....+.++..+.+ .+|. .++.+.+-...+. .+ +.+
T Consensus 365 -----p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~ 439 (564)
T KOG1174|consen 365 -----PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTP 439 (564)
T ss_pred -----hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHH
Confidence 456678888888999999999999988888876643 1221 1122211111110 00 001
Q ss_pred HH-HHHHHH-HhcCCCCchhh---hhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000191 1116 AF-EQQEAA-RNGTRKPDASI---ASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1116 a~-e~AeAl-~~~~~~~~~~~---as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
++ ..++-. .++........ ...+. .-..+...||++...+..+++|+.+|..|+.+..+
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~-~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLIIF-PDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHhhc-cccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 11 111111 11111111110 11111 12346788999999999999999999999987665
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.6e-06 Score=92.40 Aligned_cols=102 Identities=15% Similarity=0.004 Sum_probs=92.5
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000191 932 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 1011 (1888)
Q Consensus 932 pe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~ 1011 (1888)
++.....+.+|..++..|++++|..+|+-.+.+ +|.....+++||.++..+|+|.+|+..|.+|+.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----- 98 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI----- 98 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 667788999999999999999999999988876 5778899999999999999999999999999986
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 1012 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1012 G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
.+++ ...+.++|.+|...|+.+.|+..|+.|+..+
T Consensus 99 ~~dd---p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 99 KIDA---PQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred CCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 3444 5678999999999999999999999999988
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.50 E-value=3e-05 Score=94.20 Aligned_cols=166 Identities=9% Similarity=0.148 Sum_probs=131.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 000191 901 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG-DFNQATIYQQKALDINERELGLDHPDTMKS 979 (1888)
Q Consensus 901 ~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lG-dyeeAl~~~eKAL~I~Er~lG~Dhp~ta~a 979 (1888)
.++...+++++|+..+.+++.+ +|....++...+.++..+| ++++|+.++.+++.. +|....+
T Consensus 45 a~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqa 108 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQI 108 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHH
Confidence 3455678899999999999987 6777789999999999999 689999999999876 4666778
Q ss_pred HHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 000191 980 YGDLAVFYYRLQHT--ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 1057 (1888)
Q Consensus 980 y~nLA~ly~~lGdy--eeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~ 1057 (1888)
+++.+.++..+++. ++++.++.+++.+ +|....++++.++++..+|+|++|++++.++|+..
T Consensus 109 W~~R~~~l~~l~~~~~~~el~~~~kal~~--------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-------- 172 (320)
T PLN02789 109 WHHRRWLAEKLGPDAANKELEFTRKILSL--------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-------- 172 (320)
T ss_pred hHHHHHHHHHcCchhhHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--------
Confidence 99999999988874 7788888888875 46778899999999999999999999999999873
Q ss_pred HHHHHHHHHHHHHHHHc---CCh----HHHHHHHHHHHHHHHHhcCCCCHHHH
Q 000191 1058 IQTAASYHAIAIALSLM---EAY----PLSVQHEQTTLQILRAKLGPDDLRTQ 1103 (1888)
Q Consensus 1058 ~~tA~al~nLA~ay~~l---Gdy----deAle~lqkALeI~kk~LG~dh~~tl 1103 (1888)
+....++++.+.++..+ |.+ ++++.+..+++.+ .+++....
T Consensus 173 ~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~-----~P~N~SaW 220 (320)
T PLN02789 173 VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA-----NPRNESPW 220 (320)
T ss_pred CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh-----CCCCcCHH
Confidence 23356777777777665 333 4677777777654 45554443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.4e-05 Score=97.87 Aligned_cols=267 Identities=18% Similarity=0.119 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-------
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN------- 965 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~------- 965 (1888)
...++....++...|++++|++++.+.... -.+....+-..|.+|..+|++++|...|++.|...
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~--------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy 75 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQ--------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYY 75 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhh--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH
Confidence 345666778888999999999988775443 23445678888999999999999999888776541
Q ss_pred ---HHhcCCCC-------hhhHHHHHHHHHHHHH-------------cCCHHHH-HHHH---------------------
Q 000191 966 ---ERELGLDH-------PDTMKSYGDLAVFYYR-------------LQHTELA-LKYV--------------------- 1000 (1888)
Q Consensus 966 ---Er~lG~Dh-------p~ta~ay~nLA~ly~~-------------lGdyeeA-Ley~--------------------- 1000 (1888)
+..+|... ......|-.++..|-. -..|... ..|+
T Consensus 76 ~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d 155 (517)
T PF12569_consen 76 RGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKD 155 (517)
T ss_pred HHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcC
Confidence 11111100 0011111111111100 0001100 0111
Q ss_pred -------HHHHHHHHHhc---C---------CCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 000191 1001 -------KRALYLLHLTC---G---------PSHPN-TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT 1060 (1888)
Q Consensus 1001 -------~kALeL~~ki~---G---------~dhP~-~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~t 1060 (1888)
...+.-+...+ + ...|. ...+++.+|..|...|++++|+.++++|++.. |..
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--------Pt~ 227 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--------PTL 227 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--------CCc
Confidence 11111111000 0 11232 35778899999999999999999999999873 445
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCc
Q 000191 1061 AASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHL 1140 (1888)
Q Consensus 1061 A~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~ 1140 (1888)
...|...|.+|...|++.+|..+++.|..+ +..| +.+.+...-..+..+..+.++.....-...+. ....+..
T Consensus 228 ~ely~~KarilKh~G~~~~Aa~~~~~Ar~L-----D~~D-RyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~-~~~~~L~ 300 (517)
T PF12569_consen 228 VELYMTKARILKHAGDLKEAAEAMDEAREL-----DLAD-RYINSKCAKYLLRAGRIEEAEKTASLFTREDV-DPLSNLN 300 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhC-----Chhh-HHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC-CcccCHH
Confidence 678899999999999999999999988743 3322 22233333334555666666544321111111 0011111
Q ss_pred cHH--HHHHHHHHHHHHcCChHHHHHHHHHHHHHhccccCCCCC
Q 000191 1141 SVS--DLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDNNL 1182 (1888)
Q Consensus 1141 sva--elL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~q~~~~ 1182 (1888)
.+. ......|.+|.++|++..|++.|....++.+.+..++-+
T Consensus 301 ~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfD 344 (517)
T PF12569_consen 301 DMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFD 344 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 111 122345888999999999999999999999888744443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.4e-06 Score=93.18 Aligned_cols=114 Identities=19% Similarity=0.210 Sum_probs=90.4
Q ss_pred CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000191 930 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 1009 (1888)
Q Consensus 930 dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~k 1009 (1888)
.++..+.+++.+|.+|...|++++|+.++++++.+. .+.+....++.++|.+|..+|++++|+.+|.+++.+
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 101 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--- 101 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 355667889999999999999999999999999874 234445678999999999999999999999999985
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHhcCCC
Q 000191 1010 TCGPSHPNTAATYINVAMMEEGLGN-------VHVALRYLHKALKCNQRLLGPD 1056 (1888)
Q Consensus 1010 i~G~dhP~~a~a~~NLA~iy~~lG~-------yeeAle~LekALei~ek~~G~d 1056 (1888)
+|.....+.++|.+|..+|+ +++|+.++++|++++++....+
T Consensus 102 -----~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 102 -----NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred -----CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 34456667788888877655 6667777777777666554433
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.2e-05 Score=91.96 Aligned_cols=174 Identities=13% Similarity=0.134 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+..++..|..++..|+|++|+..|++.+..+ +..+....+...||.+|+.++++++|+.++++.+.. -+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~-----~P 100 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NP 100 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----Cc
Confidence 36678889999999999999999999998863 455666778899999999999999999999999987 47
Q ss_pred CChhhHHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHHHHHHHhcCCCCh--------------hHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQ---------------H---TELALKYVKRALYLLHLTCGPSHP--------------NTA 1019 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lG---------------d---yeeALey~~kALeL~~ki~G~dhP--------------~~a 1019 (1888)
+|+....+++.+|.++..++ + ..+|+..|++.+..+ ++.+ .++
T Consensus 101 ~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-----P~S~ya~~A~~rl~~l~~~la 175 (243)
T PRK10866 101 THPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-----PNSQYTTDATKRLVFLKDRLA 175 (243)
T ss_pred CCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHHHH
Confidence 78999999999999875554 1 234556666555432 2211 122
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000191 1020 ATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 1085 (1888)
Q Consensus 1020 ~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lq 1085 (1888)
.--..+|..|.+.|+|..|+.-++..++-+ ++.+....+++.+..+|..+|..++|.....
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 334567889999999999999999888765 6677888999999999999999999977653
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.3e-06 Score=100.87 Aligned_cols=165 Identities=18% Similarity=0.137 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000191 895 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 974 (1888)
Q Consensus 895 ~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp 974 (1888)
..+-.+...+...++..|+.+.+++++. ++....+|..-|.++..+|+.++|+..|+.|..+. |
T Consensus 302 ~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La--------p 365 (564)
T KOG1174|consen 302 HWFVHAQLLYDEKKFERALNFVEKCIDS--------EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA--------P 365 (564)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHhcc--------CcccchHHHhccHHHHhccchHHHHHHHHHHHhcc--------h
Confidence 3444456677888999999999998876 34445688889999999999999999999998873 6
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH-HHHH-HCCCHHHHHHHHHHHHHHHHHh
Q 000191 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVA-MMEE-GLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA-~iy~-~lG~yeeAle~LekALei~ek~ 1052 (1888)
....+|..|-.+|...|++.+|+...+.++..+. ..+.++.-+| .++. .-.--++|..+++++|.+.
T Consensus 366 ~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~--------~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~--- 434 (564)
T KOG1174|consen 366 YRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQ--------NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN--- 434 (564)
T ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhh--------cchhhhhhhcceeeccCchhHHHHHHHHHhhhccC---
Confidence 6788999999999999999999999888887652 3345555554 3333 2223478999999999873
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
|.+..+...+|.++...|.+..++..+++++.++
T Consensus 435 -----P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~ 468 (564)
T KOG1174|consen 435 -----PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF 468 (564)
T ss_pred -----CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc
Confidence 5566677788999999999999999999999775
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=3e-05 Score=106.84 Aligned_cols=166 Identities=12% Similarity=0.008 Sum_probs=85.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000191 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 975 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ 975 (1888)
+..+...|...|++++|+.+|.+.... ...|+ ..+|+.|...|.+.|++++|..++.+..... .|. .|+
T Consensus 510 ynaLI~gy~k~G~~eeAl~lf~~M~~~------Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~---~gi-~PD 578 (1060)
T PLN03218 510 FGALIDGCARAGQVAKAFGAYGIMRSK------NVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAET---HPI-DPD 578 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc---CCC-CCc
Confidence 333445666777777777777665432 11222 3456666666666677666666666554320 011 122
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 976 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 1055 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~ 1055 (1888)
..+|+.|-..|.+.|++++|+++|++..+. | -+....+|+.+...|.+.|++++|+.+|++..+. |-
T Consensus 579 -~vTynaLI~ay~k~G~ldeA~elf~~M~e~-----g--i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-----Gv 645 (1060)
T PLN03218 579 -HITVGALMKACANAGQVDRAKEVYQMIHEY-----N--IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-----GV 645 (1060)
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----C--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC
Confidence 245555556666666666666666655432 1 1112344555555666666666666666554432 10
Q ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000191 1056 DHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 1087 (1888)
Q Consensus 1056 d~~~tA~al~nLA~ay~~lGdydeAle~lqkA 1087 (1888)
.+ ...+|..|..+|...|++++|.+.+++.
T Consensus 646 -~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 646 -KP-DEVFFSALVDVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred -CC-CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 11 1234444555555555555555555543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=8.4e-06 Score=109.48 Aligned_cols=172 Identities=11% Similarity=0.098 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+...+..+...+++|+++.|+..|++++.. .|....+...++.++...|++++|+.++++++. .
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~--------~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~--------p 97 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKA--------GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS--------S 97 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhh--------CccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc--------C
Confidence 446778889999999999999999999987 344322223788888899999999999999982 1
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
.+.....+..+|.+|..+|++++|+++|+++++. .|....++..++.+|...++.++|+..+++++...
T Consensus 98 ~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~--------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--- 166 (822)
T PRK14574 98 MNISSRGLASAARAYRNEKRWDQALALWQSSLKK--------DPTNPDLISGMIMTQADAGRGGVVLKQATELAERD--- 166 (822)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC---
Confidence 2334455666788999999999999999999885 24445566678999999999999999999887763
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHH
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRT 1102 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~t 1102 (1888)
+. ...+..++.++..++++.+|++.++++++. .+++...
T Consensus 167 --p~----~~~~l~layL~~~~~~~~~AL~~~ekll~~-----~P~n~e~ 205 (822)
T PRK14574 167 --PT----VQNYMTLSYLNRATDRNYDALQASSEAVRL-----APTSEEV 205 (822)
T ss_pred --cc----hHHHHHHHHHHHhcchHHHHHHHHHHHHHh-----CCCCHHH
Confidence 11 122233455665677777799999988865 4665544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.9e-06 Score=90.28 Aligned_cols=102 Identities=12% Similarity=0.029 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000191 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 969 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~l 969 (1888)
......+|..|..++..|++++|..+|+-...+ ++..+..|++||.++..+|+|.+|+..|.+|+.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----- 98 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI----- 98 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 345678889999999999999999999887765 6777889999999999999999999999999987
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000191 970 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 1007 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~ 1007 (1888)
.++....+.++|.||...|+.+.|.+.|+.|+..+
T Consensus 99 ---~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 99 ---KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred ---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 35556789999999999999999999999999986
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.1e-06 Score=105.74 Aligned_cols=97 Identities=22% Similarity=0.246 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 973 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh 973 (1888)
..|+..|..++..|+|++|+.+|.+|+.+ .|....+|.++|.+|..+|++++|+.++++|+.+ .
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~ 66 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------D 66 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence 35778899999999999999999999987 4556679999999999999999999999999997 3
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 974 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
|....+|+++|.+|+.+|+|++|+.+|++++.+
T Consensus 67 P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 67 PSLAKAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 566788999999999999999999999999986
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.6e-05 Score=101.07 Aligned_cols=171 Identities=14% Similarity=0.068 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...++.+|.+|-++|+.++|+..+..|-.+ .|.....|..+|.....+|++.+|.-+|.+||..
T Consensus 173 ~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--------~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~-------- 236 (895)
T KOG2076|consen 173 PIAYYTLGEIYEQRGDIEKALNFWLLAAHL--------NPKDYELWKRLADLSEQLGNINQARYCYSRAIQA-------- 236 (895)
T ss_pred hhhHHHHHHHHHHcccHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------
Confidence 456888999999999999999888776554 2333367889999999999999999999999987
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT-AATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~-a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
.|.....+..-+.+|.+.|++..|+..|.+++.+. ++..-.. .......+..+...++-+.|+..++.++.....
T Consensus 237 ~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~----p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~ 312 (895)
T KOG2076|consen 237 NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD----PPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD 312 (895)
T ss_pred CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC----CchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc
Confidence 35557788899999999999999999999998864 2222222 233344577778888889999999999884333
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000191 1052 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALe 1089 (1888)
.. ....+..+|.+|....+++.|+.....-..
T Consensus 313 ~~------~~ed~ni~ael~l~~~q~d~~~~~i~~~~~ 344 (895)
T KOG2076|consen 313 EA------SLEDLNILAELFLKNKQSDKALMKIVDDRN 344 (895)
T ss_pred cc------cccHHHHHHHHHHHhHHHHHhhHHHHHHhc
Confidence 22 223345668888888999988887765444
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.5e-05 Score=105.17 Aligned_cols=240 Identities=14% Similarity=0.061 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...+..+...|...|++++|.++|.+...... ...|+ ..+|..|..+|...|++++|..+|++.... |
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~----gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~-----g-- 609 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETH----PIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEY-----N-- 609 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC----CCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----C--
Confidence 34555566788899999999999998765311 11233 357888889999999999999999887553 2
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
-......|+.|...|...|++++|+.+|.+.... | -.|+ ..+|+.+...|...|++++|++++++..+.
T Consensus 610 i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-----G-v~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~---- 678 (1060)
T PLN03218 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-----G-VKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ---- 678 (1060)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----
Confidence 2234567889999999999999999999987652 2 2344 457888899999999999999999987653
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCC
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE--YFESKAFEQQEAARNGTRKP 1130 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La--~L~qka~e~AeAl~~~~~~~ 1130 (1888)
|. .....+|..|..+|.+.|++++|++.|++.... .+.++ ..+ +..|. +...+..+.+..+......
T Consensus 679 -G~--~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~---g~~Pd-vvt---yN~LI~gy~k~G~~eeAlelf~eM~~- 747 (1060)
T PLN03218 679 -GI--KLGTVSYSSLMGACSNAKNWKKALELYEDIKSI---KLRPT-VST---MNALITALCEGNQLPKALEVLSEMKR- 747 (1060)
T ss_pred -CC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCC-HHH---HHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 11 123457888899999999999999998765421 12222 222 22222 3344444444433321110
Q ss_pred chhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1131 DASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 1172 (1888)
Q Consensus 1131 ~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL 1172 (1888)
..-.+. ..+|..+-..|.+.|++++|..++.++++.
T Consensus 748 -----~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 748 -----LGLCPN-TITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred -----cCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 011112 235666678899999999999999988753
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.6e-05 Score=100.02 Aligned_cols=243 Identities=11% Similarity=0.088 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 973 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh 973 (1888)
..+|..+.-++..++|..++...+..|.. +++....+...|..+..+|+-++|..+.+.++.. +
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k--------~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--------d 71 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKK--------FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--------D 71 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHh--------CCccchhHHhccchhhcccchHHHHHHHHHHhcc--------C
Confidence 35677778888899999999999888874 3444457788999999999999999999988873 3
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 000191 974 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 1053 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~ 1053 (1888)
+....++.-+|.++....+|++|+++|+.|+.+ .++...++..++.+..++++|+-....-.+.|+..
T Consensus 72 ~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~---- 139 (700)
T KOG1156|consen 72 LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR---- 139 (700)
T ss_pred cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh----
Confidence 445567888999999999999999999999985 35567888999999999999988777666666553
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh
Q 000191 1054 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDAS 1133 (1888)
Q Consensus 1054 G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~ 1133 (1888)
+..-..|..+|.++...|++..|...+++-.......+......-.++..+-..........++++..... ....
T Consensus 140 ----~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~-~e~~ 214 (700)
T KOG1156|consen 140 ----PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD-NEKQ 214 (700)
T ss_pred ----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh-hhhH
Confidence 33445677788999999999999998876554443222222222222222222222222222222221110 1111
Q ss_pred hhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000191 1134 IASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1134 ~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
+. +-......-+.++..++++++|...|...+....
T Consensus 215 i~-----Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnP 250 (700)
T KOG1156|consen 215 IV-----DKLAFEETKADLLMKLGQLEEAVKVYRRLLERNP 250 (700)
T ss_pred HH-----HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCc
Confidence 11 1122344567778889999999998887766443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.2e-06 Score=108.67 Aligned_cols=220 Identities=6% Similarity=-0.065 Sum_probs=159.3
Q ss_pred cCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 927 CGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 927 ~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
.+...+....++..|..+|...+++++|+..++.++.. +|..+..|+.+|.+|+..+++.+|.-. .++.+
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~ 92 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDS 92 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh
Confidence 35567888899999999999999999999999988775 678889999999999999999888755 55544
Q ss_pred HHHhc-----------CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcC
Q 000191 1007 LHLTC-----------GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLME 1075 (1888)
Q Consensus 1007 ~~ki~-----------G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lG 1075 (1888)
..... -.+++..-.++..+|.||..+|++++|...|+++|++. +..+.++.++|..|...
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--------~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--------RDNPEIVKKLATSYEEE- 163 (906)
T ss_pred cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHh-
Confidence 32110 01133444688899999999999999999999999873 55678899999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHH
Q 000191 1076 AYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAF--EQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSH 1153 (1888)
Q Consensus 1076 dydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~--e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y 1153 (1888)
++++|++++.+|+..+-..- ... .....|..++...-. +.-..+...... ...-..+.+++.-|-..|
T Consensus 164 dL~KA~~m~~KAV~~~i~~k--q~~--~~~e~W~k~~~~~~~d~d~f~~i~~ki~~------~~~~~~~~~~~~~l~~~y 233 (906)
T PRK14720 164 DKEKAITYLKKAIYRFIKKK--QYV--GIEEIWSKLVHYNSDDFDFFLRIERKVLG------HREFTRLVGLLEDLYEPY 233 (906)
T ss_pred hHHHHHHHHHHHHHHHHhhh--cch--HHHHHHHHHHhcCcccchHHHHHHHHHHh------hhccchhHHHHHHHHHHH
Confidence 99999999999998865431 111 112224444433221 111111111000 001124566788888889
Q ss_pred HHcCChHHHHHHHHHHHHHhcc
Q 000191 1154 DTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1154 ~~qGdyeEAleyyeKALeL~dS 1175 (1888)
....+|++++.++++++++..+
T Consensus 234 ~~~~~~~~~i~iLK~iL~~~~~ 255 (906)
T PRK14720 234 KALEDWDEVIYILKKILEHDNK 255 (906)
T ss_pred hhhhhhhHHHHHHHHHHhcCCc
Confidence 9999999999999999998766
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.9e-05 Score=85.01 Aligned_cols=137 Identities=22% Similarity=0.149 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
..+..+|..+...+..++...+...+++.+.. .+..+....+...+|.+++..|++++|...|++++.. .
T Consensus 9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-----~ 78 (145)
T PF09976_consen 9 EQASALYEQALQALQAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-----A 78 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----C
Confidence 34666777777777899999887767666554 2445556778889999999999999999999999884 2
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 000191 971 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKAL 1046 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekAL 1046 (1888)
.+......+...||.++...|++++|+..+... .+.+.....+..+|.+|...|++++|+..|++||
T Consensus 79 ~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 79 PDPELKPLARLRLARILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 344445577889999999999999999988552 2234445567779999999999999999999885
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.4e-06 Score=84.07 Aligned_cols=104 Identities=20% Similarity=0.154 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 936 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 1015 (1888)
Q Consensus 936 ~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dh 1015 (1888)
..++.+|..+..+|++++|+.++.+++.. .++++....+++.+|.+++..|++++|+.+|++++.. .+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCCC
Confidence 46889999999999999999999999875 3455566788999999999999999999999999975 3556
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 1016 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1016 P~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
+....++.++|.+|..+|++++|+.+|+++++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 6667788999999999999999999999999874
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.9e-06 Score=86.63 Aligned_cols=102 Identities=15% Similarity=0.130 Sum_probs=88.4
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
+|.....+..+|.++...|++++|+.++++++.+ +|.....+.++|.+|..+|++++|+.+|++++++.
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--- 81 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--- 81 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 4556678899999999999999999999998875 34556778899999999999999999999998863
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
+.....++.+|.+|...|++++|+.++++++++
T Consensus 82 -----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 -----PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred -----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334667888999999999999999999999865
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.9e-06 Score=82.51 Aligned_cols=104 Identities=16% Similarity=0.137 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...++..|..++.+|++++|+.+|.+++.. .++++....++..+|.+++..|++++|+.++++++.. .++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~ 71 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPK 71 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCC
Confidence 356788999999999999999999999875 2445555678999999999999999999999999876 345
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
++....++..+|.++..+|++++|+.++.+++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 72 SPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred CCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 5566788999999999999999999999999886
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.3e-05 Score=99.68 Aligned_cols=97 Identities=14% Similarity=0.137 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...+..+|..+..+|++++|+++|+++++. .|....++..|+.+|...+++++|+..+++++..
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~--------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~-------- 165 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLKK--------DPTNPDLISGMIMTQADAGRGGVVLKQATELAER-------- 165 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--------
Confidence 455566688999999999999999999987 3444567778899999999999999999988765
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
.+. ...+..++.++..++++.+|++.|+++++.
T Consensus 166 dp~-~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 166 DPT-VQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred Ccc-hHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 233 223355566666678887799999988875
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=2e-05 Score=105.17 Aligned_cols=142 Identities=15% Similarity=0.130 Sum_probs=115.6
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-
Q 000191 889 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER- 967 (1888)
Q Consensus 889 ~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er- 967 (1888)
.......+..+...+...+++++|+..+.++++. +|.....|+.+|.+|++.+++.+|... .++.+...
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~ 96 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN 96 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc
Confidence 4445667777788898999999999999988876 677778999999999999998888766 44444221
Q ss_pred -----------hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH
Q 000191 968 -----------ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH 1036 (1888)
Q Consensus 968 -----------~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~ye 1036 (1888)
.+ .+++..-.++..||.||..+|++++|...|++++++ .|..+.+++|+|..|... +++
T Consensus 97 ~~~~~ve~~~~~i-~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 97 LKWAIVEHICDKI-LLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred cchhHHHHHHHHH-HhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHh-hHH
Confidence 11 123444568999999999999999999999999986 266678899999999999 999
Q ss_pred HHHHHHHHHHHHHH
Q 000191 1037 VALRYLHKALKCNQ 1050 (1888)
Q Consensus 1037 eAle~LekALei~e 1050 (1888)
+|+.++.+|+..+-
T Consensus 167 KA~~m~~KAV~~~i 180 (906)
T PRK14720 167 KAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998653
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.7e-05 Score=97.38 Aligned_cols=203 Identities=15% Similarity=0.013 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 936 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 1015 (1888)
Q Consensus 936 ~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dh 1015 (1888)
++|+.-+.+.+.+++.++|+.+++++|..+ |.....|..+|.++..+++.+.|.+.|...+..+
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~f--------p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-------- 715 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKSF--------PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC-------- 715 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--------CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC--------
Confidence 455555555555666666666665555542 3444555566666666666666655555544432
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 000191 1016 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL 1095 (1888)
Q Consensus 1016 P~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~L 1095 (1888)
|..+-.+..|+.+-...|..-.|...|+++.-- .|..+..|...-++-.+.|+.+.|...+.+|++-+.
T Consensus 716 P~~ipLWllLakleEk~~~~~rAR~ildrarlk--------NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp--- 784 (913)
T KOG0495|consen 716 PNSIPLWLLLAKLEEKDGQLVRARSILDRARLK--------NPKNALLWLESIRMELRAGNKEQAELLMAKALQECP--- 784 (913)
T ss_pred CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--------CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---
Confidence 333334444555555555555555555555422 223333444444455556666666666666664431
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000191 1096 GPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1096 G~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
..........||.---+.......+++... .-..++..+|..+....++++|.++|.+++++...
T Consensus 785 --~sg~LWaEaI~le~~~~rkTks~DALkkce-------------~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d 849 (913)
T KOG0495|consen 785 --SSGLLWAEAIWLEPRPQRKTKSIDALKKCE-------------HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD 849 (913)
T ss_pred --ccchhHHHHHHhccCcccchHHHHHHHhcc-------------CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 111111111122111111111111222111 11125788999999999999999999999999988
Q ss_pred ccCCC
Q 000191 1176 FYQDN 1180 (1888)
Q Consensus 1176 i~q~~ 1180 (1888)
+++.|
T Consensus 850 ~GD~w 854 (913)
T KOG0495|consen 850 NGDAW 854 (913)
T ss_pred cchHH
Confidence 77433
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00052 Score=78.42 Aligned_cols=227 Identities=17% Similarity=0.067 Sum_probs=161.4
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000191 928 GPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 1007 (1888)
Q Consensus 928 G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~ 1007 (1888)
.++....+..|..-|.+|....+|++|...+++|...+|... .-...+.+|-..|.+...+..+.++..+|++|..++
T Consensus 24 kad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnr--slfhAAKayEqaamLake~~klsEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 24 KADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNR--SLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELY 101 (308)
T ss_pred CCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344455567788888999999999999999999999888742 233456889999999999999999999999999999
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000191 1008 HLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 1087 (1888)
Q Consensus 1008 ~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkA 1087 (1888)
.+. | .|+++..-..-|--.....+.++|+.+|++++.+.+.- ....+....+...+++|.+...|.+|-..+.+-
T Consensus 102 ~E~-G--spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~--dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 102 VEC-G--SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED--DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKE 176 (308)
T ss_pred HHh-C--CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHh
Confidence 874 3 35555444444444556778999999999999998653 233345567778899999999999999888887
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHH
Q 000191 1088 LQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRK 1166 (1888)
Q Consensus 1088 LeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyy 1166 (1888)
..+..+.-.-...--+.....|.+++...+.+++...........-. .+.-...+.+|=..| ..|+.+++...+
T Consensus 177 ~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~----~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 177 GVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFL----KSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred hhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcccc----ChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 77776654444554455566677888888888876654322111111 112223344444444 468888776554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.3e-05 Score=92.48 Aligned_cols=156 Identities=15% Similarity=0.132 Sum_probs=123.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 000191 897 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 976 (1888)
Q Consensus 897 lelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~t 976 (1888)
...+..+...|+-+++..+..+++.. ++.....+..+|......|+|.+|+..+++|..+ .|.-
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--------~p~d 133 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--------APTD 133 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--------CCCC
Confidence 44566777788888888777775432 4444445555899999999999999999999886 4667
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 977 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 1056 (1888)
Q Consensus 977 a~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d 1056 (1888)
...|+.+|.+|.+.|+++.|..-|.+|+++. +.-..+++|+|..|.-.|+++.|..++..+...- .
T Consensus 134 ~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-----~- 199 (257)
T COG5010 134 WEAWNLLGAALDQLGRFDEARRAYRQALELA--------PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-----A- 199 (257)
T ss_pred hhhhhHHHHHHHHccChhHHHHHHHHHHHhc--------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-----C-
Confidence 8889999999999999999999999999974 2234568999999999999999999998876431 2
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 000191 1057 HIQTAASYHAIAIALSLMEAYPLSVQHE 1084 (1888)
Q Consensus 1057 ~~~tA~al~nLA~ay~~lGdydeAle~l 1084 (1888)
.-..+.+||+.+....|+++.|....
T Consensus 200 --ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 200 --ADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred --CchHHHHHHHHHHhhcCChHHHHhhc
Confidence 23356788999999999999886643
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.1e-05 Score=100.82 Aligned_cols=239 Identities=12% Similarity=0.021 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---------
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI--------- 964 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I--------- 964 (1888)
..+..+...|...|++++|+.+|++.... | ..|+ ..+|..+..+|...|++++|...+..++..
T Consensus 291 vt~n~li~~y~~~g~~~eA~~lf~~M~~~-----g-~~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~ 363 (697)
T PLN03081 291 VAWNSMLAGYALHGYSEEALCLYYEMRDS-----G-VSID-QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363 (697)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeeh
Confidence 34555567778888888888888876542 1 1222 235666666777777777776666555432
Q ss_pred -------------------HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 000191 965 -------------------NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINV 1025 (1888)
Q Consensus 965 -------------------~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NL 1025 (1888)
+++.. .+ ...+|+.|...|...|+.++|+++|++.+.. | -.|+ ..+|..+
T Consensus 364 ~~Li~~y~k~G~~~~A~~vf~~m~---~~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-----g-~~Pd-~~T~~~l 432 (697)
T PLN03081 364 TALVDLYSKWGRMEDARNVFDRMP---RK-NLISWNALIAGYGNHGRGTKAVEMFERMIAE-----G-VAPN-HVTFLAV 432 (697)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCC---CC-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C-CCCC-HHHHHHH
Confidence 00000 01 1223444455555555555555555544321 1 1222 2234444
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 000191 1026 AMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDA 1105 (1888)
Q Consensus 1026 A~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a 1105 (1888)
-..+...|..++|.++|+...+.. |.. + ....|..+..+|.+.|++++|.+.+++.- ..+ +..+..+
T Consensus 433 l~a~~~~g~~~~a~~~f~~m~~~~----g~~-p-~~~~y~~li~~l~r~G~~~eA~~~~~~~~------~~p-~~~~~~~ 499 (697)
T PLN03081 433 LSACRYSGLSEQGWEIFQSMSENH----RIK-P-RAMHYACMIELLGREGLLDEAYAMIRRAP------FKP-TVNMWAA 499 (697)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhc----CCC-C-CccchHhHHHHHHhcCCHHHHHHHHHHCC------CCC-CHHHHHH
Confidence 455555555555555555443321 111 1 12345555666666677666666554320 111 2222111
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1106 AAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 1172 (1888)
Q Consensus 1106 ~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL 1172 (1888)
+.. ++...+..+.++...+...... +.....|..|..+|.+.|++++|.+.+++..+.
T Consensus 500 Ll~-a~~~~g~~~~a~~~~~~l~~~~--------p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 500 LLT-ACRIHKNLELGRLAAEKLYGMG--------PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHH-HHHHcCCcHHHHHHHHHHhCCC--------CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 111 1222333444333322211111 111235788899999999999999999876654
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=9.2e-06 Score=100.20 Aligned_cols=96 Identities=22% Similarity=0.226 Sum_probs=86.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000191 938 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN 1017 (1888)
Q Consensus 938 y~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~ 1017 (1888)
+...|..++..|+|++|+.+|++|+.+ .|....+|.++|.+|..+|++++|+.++++|+.+ .|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence 556788999999999999999999986 4556788999999999999999999999999986 355
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 1018 TAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1018 ~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
...+|+++|.+|..+|+|++|+.+|++++++.
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 56789999999999999999999999999874
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00037 Score=87.33 Aligned_cols=159 Identities=16% Similarity=0.133 Sum_probs=117.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-----------
Q 000191 897 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN----------- 965 (1888)
Q Consensus 897 lelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~----------- 965 (1888)
|+.|.++++.+..++|+..+. .+ ++..-.++..-|.++|++|+|++|+..|+..+.-.
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~-~~----------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~n 151 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK-GL----------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRAN 151 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh-cc----------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 788889999999999998887 11 12223467778999999999999999988763210
Q ss_pred ------------HHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-------hhHHHHHHHHH
Q 000191 966 ------------ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH-------PNTAATYINVA 1026 (1888)
Q Consensus 966 ------------Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dh-------P~~a~a~~NLA 1026 (1888)
.+.......++...++|.|.++...|+|.+|++.+++|+.++++.+..+. .++..+...|+
T Consensus 152 l~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQla 231 (652)
T KOG2376|consen 152 LLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLA 231 (652)
T ss_pred HHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHH
Confidence 01111112235677899999999999999999999999999887654332 23456778899
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 000191 1027 MMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIA 1070 (1888)
Q Consensus 1027 ~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~a 1070 (1888)
.+|+.+|+.++|...|...++.. -.+.+..|.+-+||-.+
T Consensus 232 yVlQ~~Gqt~ea~~iy~~~i~~~----~~D~~~~Av~~NNLva~ 271 (652)
T KOG2376|consen 232 YVLQLQGQTAEASSIYVDIIKRN----PADEPSLAVAVNNLVAL 271 (652)
T ss_pred HHHHHhcchHHHHHHHHHHHHhc----CCCchHHHHHhcchhhh
Confidence 99999999999999998877653 24555666666665544
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.3e-05 Score=101.37 Aligned_cols=196 Identities=12% Similarity=0.019 Sum_probs=94.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000191 937 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP 1016 (1888)
Q Consensus 937 ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP 1016 (1888)
+|+.|...|.+.|++++|+.+|++.... |. .|+ ..+|..+...|...|++++|.+.+..++.. | .+
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~~~-----g~-~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-----g--~~ 357 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDS-----GV-SID-QFTFSIMIRIFSRLALLEHAKQAHAGLIRT-----G--FP 357 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CC-CCC-HHHHHHHHHHHHhccchHHHHHHHHHHHHh-----C--CC
Confidence 4444455555555555555544443221 11 111 224455555555555555555555544432 1 01
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 000191 1017 NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 1096 (1888)
Q Consensus 1017 ~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG 1096 (1888)
....+++.|..+|.+.|++++|...|++..+ + ...+|..|...|...|+.++|++.+++..+ .-..
T Consensus 358 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-------~----d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~---~g~~ 423 (697)
T PLN03081 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPR-------K----NLISWNALIAGYGNHGRGTKAVEMFERMIA---EGVA 423 (697)
T ss_pred CCeeehHHHHHHHHHCCCHHHHHHHHHhCCC-------C----CeeeHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCC
Confidence 1123455566666666666666666654321 1 224567777788888888888887776542 2223
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000191 1097 PDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTY 1168 (1888)
Q Consensus 1097 ~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeK 1168 (1888)
++.. |..+.. -++...+..+.+..+....... .+.......|..+...|.+.|++++|++.+++
T Consensus 424 Pd~~-T~~~ll-~a~~~~g~~~~a~~~f~~m~~~------~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 424 PNHV-TFLAVL-SACRYSGLSEQGWEIFQSMSEN------HRIKPRAMHYACMIELLGREGLLDEAYAMIRR 487 (697)
T ss_pred CCHH-HHHHHH-HHHhcCCcHHHHHHHHHHHHHh------cCCCCCccchHhHHHHHHhcCCHHHHHHHHHH
Confidence 3322 211111 1122233344433332211000 00001123567777778888888888877654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.8e-05 Score=80.70 Aligned_cols=123 Identities=18% Similarity=0.093 Sum_probs=96.9
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 000191 947 HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVA 1026 (1888)
Q Consensus 947 ~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA 1026 (1888)
..++...+...+++.+.- ..+++....+...+|.+++..|++++|...|++++.- .++......+...||
T Consensus 23 ~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-----~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-----APDPELKPLARLRLA 92 (145)
T ss_pred HCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCCHHHHHHHHHHHH
Confidence 477777776666655543 3455566788999999999999999999999999873 233444456788899
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000191 1027 MMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 1088 (1888)
Q Consensus 1027 ~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkAL 1088 (1888)
.++...|+|++|+..++.. .........+..+|.+|..+|++++|...|++|+
T Consensus 93 ~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999999999998652 2334456677789999999999999999999874
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.3e-05 Score=93.98 Aligned_cols=122 Identities=22% Similarity=0.265 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 933 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 1012 (1888)
Q Consensus 933 e~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G 1012 (1888)
..+.-+-.-|.-++.-++|.+|+..|.+||.+ .|..+..|.|-|.+|.++|+|+.|++-++.|+.+
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i------ 144 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI------ 144 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc------
Confidence 34556667788888999999999999999997 5777889999999999999999999999999986
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChH
Q 000191 1013 PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYP 1078 (1888)
Q Consensus 1013 ~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdyd 1078 (1888)
+|....+|..||.+|..+|++++|++.|++||++. ++ ......+|..+-..+++-.
T Consensus 145 --Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeld-----P~---Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 145 --DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELD-----PD---NESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred --ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccC-----CC---cHHHHHHHHHHHHHhcCCC
Confidence 57889999999999999999999999999999984 33 2344445555544444433
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00012 Score=91.54 Aligned_cols=217 Identities=19% Similarity=0.135 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 973 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh 973 (1888)
..+|..-..+...|+|++|+....+.|.. +++.. .+.+.--.++.+++.|++|+.+.++-...
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~-----~pdd~---~a~~cKvValIq~~ky~~ALk~ikk~~~~--------- 75 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSI-----VPDDE---DAIRCKVVALIQLDKYEDALKLIKKNGAL--------- 75 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhc-----CCCcH---hhHhhhHhhhhhhhHHHHHHHHHHhcchh---------
Confidence 45555556777888999988888887765 23333 34444456677888888887544432221
Q ss_pred hhhHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---
Q 000191 974 PDTMKSY-GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN--- 1049 (1888)
Q Consensus 974 p~ta~ay-~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~--- 1049 (1888)
.+...+ +.-|.|+++++..++|+..+. .+ .... -.++.--|.++.++|+|++|+..|+..++-.
T Consensus 76 -~~~~~~~fEKAYc~Yrlnk~Dealk~~~-~~-------~~~~---~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd 143 (652)
T KOG2376|consen 76 -LVINSFFFEKAYCEYRLNKLDEALKTLK-GL-------DRLD---DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDD 143 (652)
T ss_pred -hhcchhhHHHHHHHHHcccHHHHHHHHh-cc-------cccc---hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCch
Confidence 111111 567889999999999998877 11 1122 2234446888899999999999998664310
Q ss_pred --------------------HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 000191 1050 --------------------QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL 1109 (1888)
Q Consensus 1050 --------------------ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~L 1109 (1888)
.+........+-..+||.|.++...|+|.+|++.+++|+.++++.+..++...-+..
T Consensus 144 ~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie--- 220 (652)
T KOG2376|consen 144 QDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIE--- 220 (652)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHH---
Confidence 000111112255778999999999999999999999999999887766543210000
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1110 EYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 1172 (1888)
Q Consensus 1110 a~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL 1172 (1888)
..+.-+.-.|+.++..+|+.++|...|...++.
T Consensus 221 ------------------------------~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 221 ------------------------------EELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred ------------------------------HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 022334556677777788888888877766654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.17 E-value=9.4e-05 Score=90.01 Aligned_cols=190 Identities=8% Similarity=0.026 Sum_probs=130.7
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 000191 945 LYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQ-HTELALKYVKRALYLLHLTCGPSHPNTAATYI 1023 (1888)
Q Consensus 945 y~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lG-dyeeALey~~kALeL~~ki~G~dhP~~a~a~~ 1023 (1888)
+...+++++|+..+.++|.+ +|....++...+.++..+| ++++|+.++.+++.. +|....+++
T Consensus 47 l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqaW~ 110 (320)
T PLN02789 47 YASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQIWH 110 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHHhH
Confidence 33456788999999999987 5777789999999999998 689999999999875 466677899
Q ss_pred HHHHHHHHCCCH--HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHH
Q 000191 1024 NVAMMEEGLGNV--HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLR 1101 (1888)
Q Consensus 1024 NLA~iy~~lG~y--eeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~ 1101 (1888)
+.++++..+|+. ++++.++++++++. +....++...+.++...|++++|++++.+++++ .+.+..
T Consensus 111 ~R~~~l~~l~~~~~~~el~~~~kal~~d--------pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-----d~~N~s 177 (320)
T PLN02789 111 HRRWLAEKLGPDAANKELEFTRKILSLD--------AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-----DVRNNS 177 (320)
T ss_pred HHHHHHHHcCchhhHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-----CCCchh
Confidence 999999999874 67888888888763 445678889999999999999999999999865 333333
Q ss_pred HHHHHHHHHHHH------HHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHH----cCChHHHHHHHHHHHH
Q 000191 1102 TQDAAAWLEYFE------SKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDT----KGRNVSTLKRKTYVAK 1171 (1888)
Q Consensus 1102 tl~a~~~La~L~------qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~----qGdyeEAleyyeKALe 1171 (1888)
......++.... ....+.+..+...... ..+.-..++++++.++.. .+++.+|+..+.+++.
T Consensus 178 AW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~--------~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 178 AWNQRYFVITRSPLLGGLEAMRDSELKYTIDAIL--------ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHHhccccccccccHHHHHHHHHHHHH--------hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 222222221100 0000111111111110 011223468888888877 4566778888777655
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00049 Score=87.72 Aligned_cols=132 Identities=19% Similarity=0.171 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---HhcCCCChhhH----------
Q 000191 911 DAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE---RELGLDHPDTM---------- 977 (1888)
Q Consensus 911 EAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~E---r~lG~Dhp~ta---------- 977 (1888)
++...+.+|+++.+. .+...+-..|++.|.-+...+|.+.|++||+|+-...- +.+. ++|..+
T Consensus 837 Qs~g~w~eA~eiAE~---~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~-e~p~~~e~Yv~~~~d~ 912 (1416)
T KOG3617|consen 837 QSQGMWSEAFEIAET---KDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLK-EYPKQIEQYVRRKRDE 912 (1416)
T ss_pred HhcccHHHHHHHHhh---ccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHH-hChHHHHHHHHhccch
Confidence 333344444444332 12233457899999999999999999999999622111 1111 122211
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-----cCCC---------ChhHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 000191 978 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLT-----CGPS---------HPNTAATYINVAMMEEGLGNVHVALRYLH 1043 (1888)
Q Consensus 978 ~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki-----~G~d---------hP~~a~a~~NLA~iy~~lG~yeeAle~Le 1043 (1888)
..|...|.++...|+.+.|+.+|..|.+.+..+ .|.- .-+ ..+.+.||.+|...|++.+|+.+|.
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd-~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGD-KAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhccc-HHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 345667999999999999999999998876542 2221 112 2356679999999999999999987
Q ss_pred HHHH
Q 000191 1044 KALK 1047 (1888)
Q Consensus 1044 kALe 1047 (1888)
+|-.
T Consensus 992 rAqa 995 (1416)
T KOG3617|consen 992 RAQA 995 (1416)
T ss_pred HHHH
Confidence 6543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=5.1e-05 Score=96.67 Aligned_cols=165 Identities=21% Similarity=0.256 Sum_probs=137.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 000191 900 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS 979 (1888)
Q Consensus 900 G~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~a 979 (1888)
++.|...|++..=-.+|++|.++...+ .+.+.+.+|...+..++|.+|..+++.++.+ .+.....
T Consensus 457 ~~lyc~LGDv~~d~s~yEkawElsn~~-------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~--------nplq~~~ 521 (777)
T KOG1128|consen 457 PRLYCLLGDVLHDPSLYEKAWELSNYI-------SARAQRSLALLILSNKDFSEADKHLERSLEI--------NPLQLGT 521 (777)
T ss_pred chhHHHhhhhccChHHHHHHHHHhhhh-------hHHHHHhhccccccchhHHHHHHHHHHHhhc--------CccchhH
Confidence 466777788877788899998886544 3457788888888899999999999999998 4677889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHH
Q 000191 980 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ 1059 (1888)
Q Consensus 980 y~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~ 1059 (1888)
|+++|.+..+.++++.|.++|.+++.+ .|+.+.+++|++..|..+++-.+|...+++|+++.. ++..
T Consensus 522 wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-----~~w~ 588 (777)
T KOG1128|consen 522 WFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-----QHWQ 588 (777)
T ss_pred HHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-----CCCe
Confidence 999999999999999999999999875 467789999999999999999999999999999852 2333
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 000191 1060 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL 1095 (1888)
Q Consensus 1060 tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~L 1095 (1888)
.+.|.-.+....|.+++|+..|++-+.+-+...
T Consensus 589 ---iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 589 ---IWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred ---eeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 344445566789999999999999888876654
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00011 Score=85.02 Aligned_cols=145 Identities=17% Similarity=0.111 Sum_probs=116.7
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000191 931 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010 (1888)
Q Consensus 931 hpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki 1010 (1888)
.|....+ .+++..|+..|+-+.++.+..+++.. ++.....+.-+|...++.|+|..|+..+++|..+
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l---- 129 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL---- 129 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc----
Confidence 4555566 89999999999999999888887653 3333334444899999999999999999999875
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1011 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1011 ~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
.|.-..+++.+|.+|.+.|++++|...|.+|+++. +.-..++.|||..|...|+++.|..++..++
T Consensus 130 ----~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~-- 195 (257)
T COG5010 130 ----APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA--------PNEPSIANNLGMSLLLRGDLEDAETLLLPAY-- 195 (257)
T ss_pred ----CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc--------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHH--
Confidence 35567889999999999999999999999999986 2234578899999999999999999998887
Q ss_pred HHHhcCCCCHHHHHH
Q 000191 1091 LRAKLGPDDLRTQDA 1105 (1888)
Q Consensus 1091 ~kk~LG~dh~~tl~a 1105 (1888)
..+..+..+.+.
T Consensus 196 ---l~~~ad~~v~~N 207 (257)
T COG5010 196 ---LSPAADSRVRQN 207 (257)
T ss_pred ---hCCCCchHHHHH
Confidence 334555554433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.1e-05 Score=80.30 Aligned_cols=102 Identities=27% Similarity=0.235 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 936 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 1015 (1888)
Q Consensus 936 ~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dh 1015 (1888)
.+.+.+|.++..+|+.++|+.+|++|+.. |.+.+....++..+|..|..+|++++|+..+++++.-. ++.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence 46789999999999999999999999884 66777778899999999999999999999999987631 232
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 000191 1016 PNTAATYINVAMMEEGLGNVHVALRYLHKALK 1047 (1888)
Q Consensus 1016 P~~a~a~~NLA~iy~~lG~yeeAle~LekALe 1047 (1888)
+....+...++.++..+|++++|+.++-.++.
T Consensus 72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 23455556689999999999999999887764
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.11 E-value=9.1e-05 Score=96.37 Aligned_cols=232 Identities=13% Similarity=0.014 Sum_probs=166.2
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 000191 908 KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFY 987 (1888)
Q Consensus 908 d~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly 987 (1888)
+...|+..|-+++.+ ++..+.++..||.+|+.-.+...|...|++|.++ ++..+.+.-.++..|
T Consensus 473 ~~~~al~ali~alrl--------d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--------Datdaeaaaa~adty 536 (1238)
T KOG1127|consen 473 NSALALHALIRALRL--------DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--------DATDAEAAAASADTY 536 (1238)
T ss_pred hHHHHHHHHHHHHhc--------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchhhhhHHHHHHHh
Confidence 467788888888776 5678899999999999999999999999999886 455566777889999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 000191 988 YRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAI 1067 (1888)
Q Consensus 988 ~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nL 1067 (1888)
....+++.|.....++-+..... .....+..+|..|...+++..|+..|+.||+. +|....++..|
T Consensus 537 ae~~~we~a~~I~l~~~qka~a~------~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W~gL 602 (1238)
T KOG1127|consen 537 AEESTWEEAFEICLRAAQKAPAF------ACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLWLGL 602 (1238)
T ss_pred hccccHHHHHHHHHHHhhhchHH------HHHhhhhhccccccCccchhhHHHHHHHHhcC--------CchhHHHHHHH
Confidence 99999999998854443322110 11233445899999999999999999999976 35667889999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CchhhhhcCCccHHHHH
Q 000191 1068 AIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRK-PDASIASKGHLSVSDLL 1146 (1888)
Q Consensus 1068 A~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~-~~~~~as~~~~svaelL 1146 (1888)
|.+|...|+|..|++.+.+|.. +.|.+.-.. ...+.+.+..++..+++.....- ............+++.+
T Consensus 603 GeAY~~sGry~~AlKvF~kAs~-----LrP~s~y~~---fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ 674 (1238)
T KOG1127|consen 603 GEAYPESGRYSHALKVFTKASL-----LRPLSKYGR---FKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESV 674 (1238)
T ss_pred HHHHHhcCceehHHHhhhhhHh-----cCcHhHHHH---HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 9999999999999999998874 345543322 22223333333333322211100 00111122234678889
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1147 DYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1147 ~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
..++..+..+|=+.+|..+++++++.+--+.
T Consensus 675 ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 675 IRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999998765544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.3e-05 Score=97.51 Aligned_cols=145 Identities=14% Similarity=0.018 Sum_probs=107.0
Q ss_pred ccHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 000191 888 CSSADGRQLLESSKTALDKGK---LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQA-TIYQQKALD 963 (1888)
Q Consensus 888 ~~s~~A~~LlelG~~~l~qGd---~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeA-l~~~eKAL~ 963 (1888)
+....|..++..|..++..++ +..|+.+|++|+++ +|..+.+|..|+.+|.....+... .....++..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~ 405 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALST 405 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 445578889999999887766 77899999999987 678888888888888665333210 011122222
Q ss_pred HHHHhcC-CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Q 000191 964 INERELG-LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYL 1042 (1888)
Q Consensus 964 I~Er~lG-~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~L 1042 (1888)
..++... ...+....+|.-+|..+...|++++|..++++|+++. |. +.+|..+|.+|...|++++|+++|
T Consensus 406 ~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------ps-~~a~~~lG~~~~~~G~~~eA~~~~ 476 (517)
T PRK10153 406 ELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------MS-WLNYVLLGKVYELKGDNRLAADAY 476 (517)
T ss_pred HHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CC-HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2222111 1123345778888999999999999999999999862 33 568999999999999999999999
Q ss_pred HHHHHHH
Q 000191 1043 HKALKCN 1049 (1888)
Q Consensus 1043 ekALei~ 1049 (1888)
++|+.+.
T Consensus 477 ~~A~~L~ 483 (517)
T PRK10153 477 STAFNLR 483 (517)
T ss_pred HHHHhcC
Confidence 9999874
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00049 Score=80.81 Aligned_cols=90 Identities=20% Similarity=0.189 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 1013 (1888)
Q Consensus 934 ~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~ 1013 (1888)
.+..++..|..++..|+|++|+..|++.+... ++.+....+...||.+|+.++++++|+.++++.+.. -+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~-----~P 100 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NP 100 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----Cc
Confidence 34567888999999999999999999998863 455677788899999999999999999999999986 47
Q ss_pred CChhHHHHHHHHHHHHHHCC
Q 000191 1014 SHPNTAATYINVAMMEEGLG 1033 (1888)
Q Consensus 1014 dhP~~a~a~~NLA~iy~~lG 1033 (1888)
+||....+++.+|.++..++
T Consensus 101 ~~~~~~~a~Y~~g~~~~~~~ 120 (243)
T PRK10866 101 THPNIDYVLYMRGLTNMALD 120 (243)
T ss_pred CCCchHHHHHHHHHhhhhcc
Confidence 89999999999998865543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00025 Score=87.73 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=50.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 000191 899 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK 978 (1888)
Q Consensus 899 lG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ 978 (1888)
.|..++..|++++|+..++..+.. +|.....+...+.++...++..+|++.+++++.. .|....
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--------~P~~~~ 375 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--------DPNSPL 375 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCCccH
Confidence 344444444455444444442222 2333334444455555555555555555555443 122233
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH
Q 000191 979 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH 1036 (1888)
Q Consensus 979 ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~ye 1036 (1888)
...++|..|...|++++|+.++++.+. +.|+....|..||..|..+|+..
T Consensus 376 l~~~~a~all~~g~~~eai~~L~~~~~--------~~p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 376 LQLNLAQALLKGGKPQEAIRILNRYLF--------NDPEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhh--------cCCCCchHHHHHHHHHHHhCchH
Confidence 344455555555555555544444332 12333334444455555544443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.1e-05 Score=73.33 Aligned_cols=96 Identities=36% Similarity=0.526 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000191 937 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP 1016 (1888)
Q Consensus 937 ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP 1016 (1888)
++..+|.+++.+|++++|+.++++++... +....++..+|.++...+++++|+.++.+++.+. +.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~-- 66 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD--------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-----PD-- 66 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----Cc--
Confidence 57889999999999999999999998762 2233778899999999999999999999998752 22
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000191 1017 NTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 1017 ~~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
...++..+|.++...|++++|..+++++++.
T Consensus 67 -~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 67 -NAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred -chhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 2367888999999999999999999988764
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00022 Score=81.31 Aligned_cols=189 Identities=15% Similarity=0.031 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..+...+..|....+|++|-..+.+|..-+++--. --..+.+|-..|++...+..+.++..+|+||..++.+..
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrs--lfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G--- 105 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRS--LFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG--- 105 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC---
Confidence 445555567777888999999999999987765421 123467889999999999999999999999999998753
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
+|+++..-..-|--....-+.++|+.+|++++.+.+.- .........+..++.+|.++.+|.+|-..+.+-..+..+.
T Consensus 106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~--dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~ 183 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED--DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKC 183 (308)
T ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHH
Confidence 45555443444444566788999999999999998762 2223345677888999999999999988888766665554
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
-. .......+..+-.+|....||..|...++...+|
T Consensus 184 ~~--y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 184 DA--YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred hh--cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 21 1222333444445566677999999999988765
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00039 Score=79.34 Aligned_cols=143 Identities=20% Similarity=0.154 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 1013 (1888)
Q Consensus 934 ~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~ 1013 (1888)
.+..++..|..++..|+|.+|+..|++.+..+ +.++....+...+|.+++..|++++|+..+++-+... +
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P 73 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----P 73 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----C
Confidence 35678999999999999999999999988763 5577888999999999999999999999999988763 7
Q ss_pred CChhHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHHhcCCCcHHH--------------HHHHHHHH
Q 000191 1014 SHPNTAATYINVAMMEEGLG-----------NVHVALRYLHKALKCNQRLLGPDHIQT--------------AASYHAIA 1068 (1888)
Q Consensus 1014 dhP~~a~a~~NLA~iy~~lG-----------~yeeAle~LekALei~ek~~G~d~~~t--------------A~al~nLA 1068 (1888)
+|+....+++.+|.++..+. ...+|+..|+..++.+ +++... +.--+.+|
T Consensus 74 ~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-----P~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 74 NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-----PNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-----cCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888899999999876542 2346677776666544 444332 23334567
Q ss_pred HHHHHcCChHHHHHHHHHHHHHH
Q 000191 1069 IALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1069 ~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
..|...|.|..|+..++..++-+
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~y 171 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENY 171 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHcccHHHHHHHHHHHHHHC
Confidence 78888888888888888776543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0004 Score=82.03 Aligned_cols=144 Identities=17% Similarity=0.118 Sum_probs=111.2
Q ss_pred CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000191 930 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 1009 (1888)
Q Consensus 930 dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~k 1009 (1888)
..+.-+.-...||.-+...|++..|+..|..|++. +|....+++.-|.+|..+|+-.-|+.-+.+.|++
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--- 101 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--- 101 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc---
Confidence 45555667788999999999999999999999985 6788899999999999999999999999999986
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC--------cHHHHHHHHHHHHHHHHcCChHHHH
Q 000191 1010 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD--------HIQTAASYHAIAIALSLMEAYPLSV 1081 (1888)
Q Consensus 1010 i~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d--------~~~tA~al~nLA~ay~~lGdydeAl 1081 (1888)
.|+...+....|.++..+|++++|..-|+..|...... |.. ...--..+.....-+...|++..|+
T Consensus 102 -----KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 102 -----KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAI 175 (504)
T ss_pred -----CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHH
Confidence 47888889999999999999999999999988753110 000 0000111222233445568888888
Q ss_pred HHHHHHHHH
Q 000191 1082 QHEQTTLQI 1090 (1888)
Q Consensus 1082 e~lqkALeI 1090 (1888)
.+....++|
T Consensus 176 ~~i~~llEi 184 (504)
T KOG0624|consen 176 EMITHLLEI 184 (504)
T ss_pred HHHHHHHhc
Confidence 888777765
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.8e-05 Score=71.58 Aligned_cols=96 Identities=34% Similarity=0.471 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000191 895 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 974 (1888)
Q Consensus 895 ~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp 974 (1888)
.++.+|..++..|++++|+.++++++... +....++..+|.+|...|++++|+.++++++.+. +
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD--------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--------P 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C
Confidence 36778899999999999999999998762 2223678999999999999999999999998863 2
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
....++..+|.++...|++++|..++.+++.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 22367889999999999999999999998764
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00083 Score=92.15 Aligned_cols=28 Identities=4% Similarity=-0.033 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000191 1144 DLLDYINPSHDTKGRNVSTLKRKTYVAK 1171 (1888)
Q Consensus 1144 elL~~Lg~~y~~qGdyeEAleyyeKALe 1171 (1888)
..|..|+.+|...|++++|.+..+...+
T Consensus 692 ~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 692 GYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred chHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 4678889999999999999888876654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00062 Score=85.76 Aligned_cols=228 Identities=15% Similarity=0.080 Sum_probs=159.1
Q ss_pred HcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 000191 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLA 984 (1888)
Q Consensus 905 ~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA 984 (1888)
..|..++-..++++|+... |..-..+..+|..++..|+..+|...+.+|++. +|..-.++..--
T Consensus 562 ~hgt~Esl~Allqkav~~~--------pkae~lwlM~ake~w~agdv~~ar~il~~af~~--------~pnseeiwlaav 625 (913)
T KOG0495|consen 562 SHGTRESLEALLQKAVEQC--------PKAEILWLMYAKEKWKAGDVPAARVILDQAFEA--------NPNSEEIWLAAV 625 (913)
T ss_pred hcCcHHHHHHHHHHHHHhC--------CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--------CCCcHHHHHHHH
Confidence 4577888888888888763 333346777888899999999999999998875 344445555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 000191 985 VFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASY 1064 (1888)
Q Consensus 985 ~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al 1064 (1888)
.+.+...+++.|..+|.+|.... -+..+|..-+.+...+++.++|+++++++|+.+ +..-..|
T Consensus 626 Kle~en~e~eraR~llakar~~s---------gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--------p~f~Kl~ 688 (913)
T KOG0495|consen 626 KLEFENDELERARDLLAKARSIS---------GTERVWMKSANLERYLDNVEEALRLLEEALKSF--------PDFHKLW 688 (913)
T ss_pred HHhhccccHHHHHHHHHHHhccC---------CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--------CchHHHH
Confidence 66788899999999999998731 235667777888888999999999999999876 3455778
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHhcCCCCchhhhhcCCccH
Q 000191 1065 HAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKA--FEQQEAARNGTRKPDASIASKGHLSV 1142 (1888)
Q Consensus 1065 ~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka--~e~AeAl~~~~~~~~~~~as~~~~sv 1142 (1888)
..+|+++..+++.+.|...|...+..+ |...-... .|+.+..+. .-.+.+........ .+..
T Consensus 689 lmlGQi~e~~~~ie~aR~aY~~G~k~c-----P~~ipLWl---lLakleEk~~~~~rAR~ildrarlk--------NPk~ 752 (913)
T KOG0495|consen 689 LMLGQIEEQMENIEMAREAYLQGTKKC-----PNSIPLWL---LLAKLEEKDGQLVRARSILDRARLK--------NPKN 752 (913)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhccccC-----CCCchHHH---HHHHHHHHhcchhhHHHHHHHHHhc--------CCCc
Confidence 889999999999999988887666432 33332222 233333332 22233333222211 1122
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhccccCCCC
Q 000191 1143 SDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDNN 1181 (1888)
Q Consensus 1143 aelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~q~~~ 1181 (1888)
..++...-.+..+.|+.++|...+.+||+-+.+.+-.|.
T Consensus 753 ~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWa 791 (913)
T KOG0495|consen 753 ALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWA 791 (913)
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHH
Confidence 334444455567889999999999999999888764443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.96 E-value=9.5e-05 Score=89.89 Aligned_cols=126 Identities=17% Similarity=0.150 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChh-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRM-------TAGAYSLLAVVLYHTGDFNQATIYQQKALD 963 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe-------~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~ 963 (1888)
..|...-+.|..++..|+|..|...|++|+..+....+.+..+ ...|+.|||.+|..+++|.+|+..+.++|.
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 4467778889999999999999999999999876544333221 245788999999999999999999999988
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC
Q 000191 964 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL 1032 (1888)
Q Consensus 964 I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~l 1032 (1888)
+ .+....+++.-|.+|..+|+|+.|+..|++|+++. |..-.+...|..+-...
T Consensus 286 ~--------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--------P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 286 L--------DPNNVKALYRRGQALLALGEYDLARDDFQKALKLE--------PSNKAARAELIKLKQKI 338 (397)
T ss_pred c--------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHH
Confidence 6 45667889999999999999999999999999862 33334444455554443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.1e-05 Score=72.21 Aligned_cols=65 Identities=29% Similarity=0.543 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Q 000191 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQ-HTELALKYVKRALYL 1006 (1888)
Q Consensus 934 ~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lG-dyeeALey~~kALeL 1006 (1888)
.+.+|..+|.+++.+|++++|+.+|.+|+.+ +|....+++++|.+|..+| ++++|+.++++|+++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 3678999999999999999999999999997 5777889999999999999 799999999999986
|
... |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00064 Score=93.27 Aligned_cols=97 Identities=7% Similarity=-0.002 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCcc
Q 000191 1062 ASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLS 1141 (1888)
Q Consensus 1062 ~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~s 1141 (1888)
.+|..+...|...|+.++|+..|++..+ .-..++.......+. ++...+..+.+..+...... ..... .
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~---~g~~Pd~~T~~~ll~--a~~~~g~v~ea~~~f~~M~~-----~~gi~-P 623 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVE---SGVNPDEVTFISLLC--ACSRSGMVTQGLEYFHSMEE-----KYSIT-P 623 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCCcccHHHHHH--HHhhcChHHHHHHHHHHHHH-----HhCCC-C
Confidence 4577778888888999988888876542 233344332211111 12333444444333221100 00001 1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000191 1142 VSDLLDYINPSHDTKGRNVSTLKRKTYV 1169 (1888)
Q Consensus 1142 vaelL~~Lg~~y~~qGdyeEAleyyeKA 1169 (1888)
-...|..+..+|.+.|++++|.+.+++.
T Consensus 624 ~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 624 NLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 2357899999999999999999998764
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0036 Score=80.90 Aligned_cols=179 Identities=18% Similarity=0.129 Sum_probs=125.3
Q ss_pred HHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHhc
Q 000191 895 QLLESSKTA-LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT----GDFNQATIYQQKALDINEREL 969 (1888)
Q Consensus 895 ~LlelG~~~-l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~l----GdyeeAl~~~eKAL~I~Er~l 969 (1888)
.++..++.+ -..+.+++++.|.++|+..+... .......+|..+|.+|..+ ....+=..+.+|+++.+++..
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~---~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av 471 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQ---RSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAV 471 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhh---hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHH
Confidence 334344444 45688999999999999976433 2333457888888887654 344555667778888777775
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 970 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
..|..+. .+.++||..|..+++.+.|+.+.++++++. +.+ .+.++.-+|.++...+++.+|+...+.|++-+
T Consensus 472 ~~d~~dp-~~if~lalq~A~~R~l~sAl~~~~eaL~l~----~~~---~~~~whLLALvlSa~kr~~~Al~vvd~al~E~ 543 (799)
T KOG4162|consen 472 QFDPTDP-LVIFYLALQYAEQRQLTSALDYAREALALN----RGD---SAKAWHLLALVLSAQKRLKEALDVVDAALEEF 543 (799)
T ss_pred hcCCCCc-hHHHHHHHHHHHHHhHHHHHHHHHHHHHhc----CCc---cHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Confidence 5544333 677889999999999999999999999862 233 35667789999999999999999999999876
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 000191 1050 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 1092 (1888)
Q Consensus 1050 ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~k 1092 (1888)
...++-. +.-..+-...++.++|+..+..-+.+++
T Consensus 544 ~~N~~l~--------~~~~~i~~~~~~~e~~l~t~~~~L~~we 578 (799)
T KOG4162|consen 544 GDNHVLM--------DGKIHIELTFNDREEALDTCIHKLALWE 578 (799)
T ss_pred hhhhhhc--------hhhhhhhhhcccHHHHHHHHHHHHHHHH
Confidence 4432211 1112222335666777766666666665
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.90 E-value=4.9e-05 Score=70.83 Aligned_cols=65 Identities=29% Similarity=0.492 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
Q 000191 976 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG-NVHVALRYLHKALKC 1048 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG-~yeeAle~LekALei 1048 (1888)
.+..|.++|.+++..|+|++|+.+|.+|+.+ +|....++.++|.+|..+| ++++|+.++++|+++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 3578899999999999999999999999997 4667889999999999999 799999999999986
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00019 Score=85.12 Aligned_cols=104 Identities=15% Similarity=0.120 Sum_probs=90.0
Q ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 936 GAYSLLAVVL-YHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 1014 (1888)
Q Consensus 936 ~ay~~LA~ly-~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~d 1014 (1888)
..++..|..+ +..|+|++|+..|++.+..+ ++++....+++.||.+|+..|++++|+.+|++++..+ ++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~ 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PK 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence 4556666655 56799999999999998874 5566677899999999999999999999999998753 67
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 1015 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1015 hP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
|+....++..+|.+|..+|++++|+.+|+++++.+
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 88899999999999999999999999999988765
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00013 Score=88.80 Aligned_cols=106 Identities=23% Similarity=0.285 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh-------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000191 936 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD-------TMKSYGDLAVFYYRLQHTELALKYVKRALYLLH 1008 (1888)
Q Consensus 936 ~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~-------ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ 1008 (1888)
.....-|..|++.|+|..|...|++|+...+...+.+..+ ...++.|||.||..+++|.+|+.++.++|.+
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-- 286 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL-- 286 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc--
Confidence 3445568899999999999999999999887554443322 2467899999999999999999999999985
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 1009 LTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1009 ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
.|....+++.-|.+|..+|+|+.|+..|++|+++.
T Consensus 287 ------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 287 ------DPNNVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred ------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 34456788999999999999999999999999885
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0019 Score=82.04 Aligned_cols=132 Identities=22% Similarity=0.256 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 973 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh 973 (1888)
..+-..|..+...|+-++|..+.+.++.. ++....||+.+|.++....+|++|+..|+.|+.+ .
T Consensus 42 eslAmkGL~L~~lg~~~ea~~~vr~glr~--------d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--------~ 105 (700)
T KOG1156|consen 42 ESLAMKGLTLNCLGKKEEAYELVRLGLRN--------DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--------E 105 (700)
T ss_pred hhHHhccchhhcccchHHHHHHHHHHhcc--------CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--------C
Confidence 34445677788899999999999988864 3333469999999999999999999999999997 4
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 974 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
++...++..|+.+..++++|+-....-.+.+++. |..-..|..+|..+...|++..|...++.-....
T Consensus 106 ~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--------~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 106 KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR--------PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5667889999999999999998877766666643 4445567778888888899988887776655443
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0025 Score=78.39 Aligned_cols=251 Identities=13% Similarity=-0.022 Sum_probs=159.7
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHhcCCC--Chh----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC--CCCh
Q 000191 903 ALDKGKLEDAVTYGTKALAKLVAVCGPY--HRM----TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG--LDHP 974 (1888)
Q Consensus 903 ~l~qGd~dEAie~~eeAL~l~eqi~G~d--hpe----~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG--~Dhp 974 (1888)
-+..|-|++|.++-.+++...++....+ .+. ....+-++..+-...|++.+|++....+...+.+.-+ .-..
T Consensus 285 sm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~ 364 (629)
T KOG2300|consen 285 SMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRA 364 (629)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHH
Confidence 3467889999999999998866653222 111 1234556777888899999999999999999988655 2233
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 000191 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G 1054 (1888)
..+...+-+|.+++.-+.|+.|...|..|..+.... ...+.+-.|+|.+|.+.|+.+.-. ++++.. |
T Consensus 365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~a~~nlnlAi~YL~~~~~ed~y----~~ld~i----~ 431 (629)
T KOG2300|consen 365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQAFCNLNLAISYLRIGDAEDLY----KALDLI----G 431 (629)
T ss_pred hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHHHHHHHhHHHHHHHhccHHHHH----HHHHhc----C
Confidence 456778899999999999999999999999875442 235667789999999988765433 333332 3
Q ss_pred CCc-------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000191 1055 PDH-------IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGT 1127 (1888)
Q Consensus 1055 ~d~-------~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~ 1127 (1888)
+.+ ...+.+++..|...+.++++.+|..++++.+++.... .....+...+..|..+..-.++..++.....
T Consensus 432 p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanae--d~~rL~a~~LvLLs~v~lslgn~~es~nmvr 509 (629)
T KOG2300|consen 432 PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAE--DLNRLTACSLVLLSHVFLSLGNTVESRNMVR 509 (629)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchh--hHHHHHHHHHHHHHHHHHHhcchHHHHhccc
Confidence 331 2345667777888889999999999999999886321 1122233333344443333322222221111
Q ss_pred CCCchhhhhcCCccHHHHHHHHHHHHHHcCC--hHHHHHHHHH
Q 000191 1128 RKPDASIASKGHLSVSDLLDYINPSHDTKGR--NVSTLKRKTY 1168 (1888)
Q Consensus 1128 ~~~~~~~as~~~~svaelL~~Lg~~y~~qGd--yeEAleyyeK 1168 (1888)
.....+....++.-..-....+..+|...|+ -+.+.+.|.+
T Consensus 510 pamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 510 PAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred hHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 1111111223333333344456667777777 5555555554
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00068 Score=86.56 Aligned_cols=161 Identities=18% Similarity=0.179 Sum_probs=113.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 000191 900 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS 979 (1888)
Q Consensus 900 G~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~a 979 (1888)
|....+.|-+++|+.+|++.-+ |-.|-.+|..+|.+++|.+..+ . .|....-..
T Consensus 807 AvLAieLgMlEeA~~lYr~ckR----------------~DLlNKlyQs~g~w~eA~eiAE-------~---~DRiHLr~T 860 (1416)
T KOG3617|consen 807 AVLAIELGMLEEALILYRQCKR----------------YDLLNKLYQSQGMWSEAFEIAE-------T---KDRIHLRNT 860 (1416)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH----------------HHHHHHHHHhcccHHHHHHHHh-------h---ccceehhhh
Confidence 3445677888888888877633 3445667888888887766543 2 344456688
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHhcCCCChhHH----------HHHHHHHHHHHHCCCHHHHHHHHHHH
Q 000191 980 YGDLAVFYYRLQHTELALKYVKRAL----YLLHLTCGPSHPNTA----------ATYINVAMMEEGLGNVHVALRYLHKA 1045 (1888)
Q Consensus 980 y~nLA~ly~~lGdyeeALey~~kAL----eL~~ki~G~dhP~~a----------~a~~NLA~iy~~lG~yeeAle~LekA 1045 (1888)
|++.|..+...++.+.|++||+++- ++.+.+ .. .|..+ ..|...|..+...|+.+.|+.+|..|
T Consensus 861 yy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL-~e-~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 861 YYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRML-KE-YPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHH-Hh-ChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 9999999999999999999999853 332221 11 12111 34566788899999999999999988
Q ss_pred HHHHHHh-----cCCC---------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000191 1046 LKCNQRL-----LGPD---------HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1046 Lei~ek~-----~G~d---------~~~tA~al~nLA~ay~~lGdydeAle~lqkALe 1089 (1888)
-+.+... .|.. +-.. .+.+.||+.|...|++.+|+.+|.+|..
T Consensus 939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~-AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 939 KDYFSMVRIKCIQGKTDKAARIAEESGDK-AACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhhhhheeeEeeccCchHHHHHHHhcccH-HHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 7765332 1221 2223 3455789999999999999999988754
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00059 Score=84.91 Aligned_cols=162 Identities=14% Similarity=0.076 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhc---C------CHHHHHHHHHHHH
Q 000191 895 QLLESSKTALDKGK---LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT---G------DFNQATIYQQKAL 962 (1888)
Q Consensus 895 ~LlelG~~~l~qGd---~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~l---G------dyeeAl~~~eKAL 962 (1888)
.++-.|...+.++. .+.|+.+|.+|+.. ...+|..+.+|..+|.+++.. | +..+|..+.++|+
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~-----~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNK-----SDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhc-----ccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 66777877777665 45677778887733 134788899999999998875 2 2345556666666
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Q 000191 963 DINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYL 1042 (1888)
Q Consensus 963 ~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~L 1042 (1888)
++ ++.-+.++..+|.++...++++.|+..|++|+.+ .|+.+.+++..|+++...|+.++|++++
T Consensus 332 el--------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 332 DI--------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred hc--------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55 3556788899999999999999999999999986 4778899999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHH-HHHHcCChHHHHHHHH
Q 000191 1043 HKALKCNQRLLGPDHIQTAASYHAIAI-ALSLMEAYPLSVQHEQ 1085 (1888)
Q Consensus 1043 ekALei~ek~~G~d~~~tA~al~nLA~-ay~~lGdydeAle~lq 1085 (1888)
++|+++. +. ..+.....+-. .| .....+.|+.+|-
T Consensus 396 ~~alrLs-----P~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 431 (458)
T PRK11906 396 DKSLQLE-----PR--RRKAVVIKECVDMY-VPNPLKNNIKLYY 431 (458)
T ss_pred HHHhccC-----ch--hhHHHHHHHHHHHH-cCCchhhhHHHHh
Confidence 9999874 21 12222223333 33 3456677777663
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0002 Score=75.20 Aligned_cols=102 Identities=26% Similarity=0.209 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 000191 978 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 1057 (1888)
Q Consensus 978 ~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~ 1057 (1888)
.+.+++|.++..+|+.++|+.+|++|+.. |.+.+....++.++|..|..+|++++|+..+++++.-. ++.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence 35688999999999999999999999983 56667778899999999999999999999999987643 332
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000191 1058 IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1058 ~~tA~al~nLA~ay~~lGdydeAle~lqkALe 1089 (1888)
.........+|.++...|++++|+..+-.++.
T Consensus 72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444555678999999999999998877663
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.84 E-value=6.3e-05 Score=73.29 Aligned_cols=84 Identities=26% Similarity=0.316 Sum_probs=66.1
Q ss_pred HcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 000191 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLA 984 (1888)
Q Consensus 905 ~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA 984 (1888)
++|++++|+.++++++..... .+ ....+..||.+|+.+|+|++|+.++++ +.+. +........+|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--------~~~~~~~~l~a 65 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--------PSNPDIHYLLA 65 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--------HCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--------CCCHHHHHHHH
Confidence 468999999999999988421 22 445777799999999999999999998 4332 23456667789
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 000191 985 VFYYRLQHTELALKYVKRA 1003 (1888)
Q Consensus 985 ~ly~~lGdyeeALey~~kA 1003 (1888)
.++..+|++++|+.+|++|
T Consensus 66 ~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999875
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0055 Score=76.30 Aligned_cols=134 Identities=19% Similarity=0.167 Sum_probs=108.4
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000191 932 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 1011 (1888)
Q Consensus 932 pe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~ 1011 (1888)
+....+.+..|..++..|++++|+..++..+.. +|+........+.++...++..+|++.+++++.+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l----- 369 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL----- 369 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----
Confidence 345578899999999999999999999884442 4566666677899999999999999999999986
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000191 1012 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1012 G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALe 1089 (1888)
.|.......++|.+|...|++.+|+..++..+.- .+.....|..||++|..+|+..+|...+.+.+.
T Consensus 370 ---~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~--------~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 370 ---DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN--------DPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred ---CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc--------CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 3454667788999999999999999999877653 344556788889999999888888777666553
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00025 Score=84.04 Aligned_cols=104 Identities=10% Similarity=0.058 Sum_probs=89.9
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 978 KSYGDLAVFY-YRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 1056 (1888)
Q Consensus 978 ~ay~nLA~ly-~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d 1056 (1888)
...++.|..+ ...|+|++|+..|++.+..+ ++++....+++.+|.+|...|++++|+.+|+++++.+ ++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~ 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PK 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence 5566677665 56799999999999998863 5566667889999999999999999999999999876 77
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000191 1057 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1057 ~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
++....+++.+|.+|..+|++++|...|++.++.+
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 88899999999999999999999999999887654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0033 Score=66.81 Aligned_cols=173 Identities=27% Similarity=0.285 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
.......+..+...+.+..+...+..++.. .........+..++..+...+++..|+..+.+++.....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 127 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPD----- 127 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCC-----
Confidence 344555667788889999999888888764 123455678888899999999999998888888775211
Q ss_pred ChhhHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 973 HPDTMKSYGDLAV-FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 973 hp~ta~ay~nLA~-ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
. .......+. ++...|+++.|..++.+++.+ .+........+...+..+...++++.|+..+.+++.....
T Consensus 128 -~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 128 -P--DLAEALLALGALYELGDYEEALELYEKALEL-----DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred -c--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 1 222233333 889999999999999999552 1101234555666777788899999999999999887532
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000191 1052 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
. ....+..++..+...+++..|+..+.+++...
T Consensus 200 ~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 232 (291)
T COG0457 200 D-------DAEALLNLGLLYLKLGKYEEALEYYEKALELD 232 (291)
T ss_pred c-------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhC
Confidence 1 34567788899999999999999998888664
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0004 Score=82.11 Aligned_cols=161 Identities=15% Similarity=0.090 Sum_probs=104.9
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 000191 902 TALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYG 981 (1888)
Q Consensus 902 ~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~ 981 (1888)
-++...+|..|+.+++-.+.+ +..+-...-.++|.+|+++|+|++|+..|.-+.. .++ --+....
T Consensus 31 dfls~rDytGAislLefk~~~-------~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~-------~~~-~~~el~v 95 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNL-------DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN-------KDD-APAELGV 95 (557)
T ss_pred HHHhcccchhHHHHHHHhhcc-------chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc-------cCC-CCcccch
Confidence 345677999999988877754 2222235667899999999999999998876544 112 2245668
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH---------HHHhcCCC------C---hhHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 000191 982 DLAVFYYRLQHTELALKYVKRALYL---------LHLTCGPS------H---PNTAATYINVAMMEEGLGNVHVALRYLH 1043 (1888)
Q Consensus 982 nLA~ly~~lGdyeeALey~~kALeL---------~~ki~G~d------h---P~~a~a~~NLA~iy~~lG~yeeAle~Le 1043 (1888)
|||.+++.+|.|.+|.....+|-.. ....++.. | .++..-...||.+....-.|++|++.|.
T Consensus 96 nLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYk 175 (557)
T KOG3785|consen 96 NLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYK 175 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998776554211 00111111 1 1122333445666555666677777766
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000191 1044 KALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 1085 (1888)
Q Consensus 1044 kALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lq 1085 (1888)
+.|.- .+.....-.++|.+|+++.-|+-+.+.++
T Consensus 176 rvL~d--------n~ey~alNVy~ALCyyKlDYydvsqevl~ 209 (557)
T KOG3785|consen 176 RVLQD--------NPEYIALNVYMALCYYKLDYYDVSQEVLK 209 (557)
T ss_pred HHHhc--------ChhhhhhHHHHHHHHHhcchhhhHHHHHH
Confidence 66543 44555566678999999988887766554
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.012 Score=71.66 Aligned_cols=173 Identities=20% Similarity=0.137 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
..+......|..-+..|+|.+|+.+..++-+. ++.-..+|..-|.+-.++|+++.|-.|..+|-+..
T Consensus 82 rra~~~~~egl~~l~eG~~~qAEkl~~rnae~--------~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~----- 148 (400)
T COG3071 82 RRARKALNEGLLKLFEGDFQQAEKLLRRNAEH--------GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA----- 148 (400)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhc--------CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-----
Confidence 34666677778888899999999999886443 22334567777889999999999999999887652
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
Q 000191 971 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC-- 1048 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei-- 1048 (1888)
..++...+...+.+...+|++..|..-..++++. ++.||... .-...+|...|+|.+.+.++.+.-+.
T Consensus 149 --~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~-----~pr~~~vl---rLa~r~y~~~g~~~~ll~~l~~L~ka~~ 218 (400)
T COG3071 149 --GDDTLAVELTRARLLLNRRDYPAARENVDQLLEM-----TPRHPEVL---RLALRAYIRLGAWQALLAILPKLRKAGL 218 (400)
T ss_pred --CCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHh-----CcCChHHH---HHHHHHHHHhccHHHHHHHHHHHHHccC
Confidence 1235667788899999999999999998888875 45566554 44677889999998888776533221
Q ss_pred -----------------HHHhc---C---------------CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000191 1049 -----------------NQRLL---G---------------PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1049 -----------------~ek~~---G---------------~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALe 1089 (1888)
..+.. | ..++ .+...+|.-+..+|++++|.+..++++.
T Consensus 219 l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p---~l~~~~a~~li~l~~~~~A~~~i~~~Lk 291 (400)
T COG3071 219 LSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDP---ELVVAYAERLIRLGDHDEAQEIIEDALK 291 (400)
T ss_pred CChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcCh---hHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 00100 0 1112 2333457778899999999999888874
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0072 Score=79.61 Aligned_cols=219 Identities=14% Similarity=0.070 Sum_probs=121.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000191 937 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP 1016 (1888)
Q Consensus 937 ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP 1016 (1888)
.|.|+|.++....+++.|...+.++..+ .|.....+...|.+....|+.-+++..+...-++.... ..-+
T Consensus 852 ~W~NlgvL~l~n~d~E~A~~af~~~qSL--------dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~--gka~ 921 (1238)
T KOG1127|consen 852 QWLNLGVLVLENQDFEHAEPAFSSVQSL--------DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKE--GKAK 921 (1238)
T ss_pred heeccceeEEecccHHHhhHHHHhhhhc--------CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccc--cccc
Confidence 3444444444444444444444443332 34444555555555566666656655555544433221 1111
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000191 1017 NTAATYINVAMMEEGLGNVHVALRYLHKALK--CNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 1094 (1888)
Q Consensus 1017 ~~a~a~~NLA~iy~~lG~yeeAle~LekALe--i~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~ 1094 (1888)
. ...+.+--.+....|++++.+...+++-. +..+.+-..++....+|...|.....++.|+.|.+.+.+.+.+++..
T Consensus 922 ~-f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k 1000 (1238)
T KOG1127|consen 922 K-FQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELK 1000 (1238)
T ss_pred h-hhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 22233344445566666666655544322 11222234577888888889999999999999999999999999888
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000191 1095 LGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1095 LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
+..+............++..+.++.+........ ..+.+-.........-+++|+++.+.|++|+.+.+
T Consensus 1001 ~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~-----------~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~ 1069 (1238)
T KOG1127|consen 1001 LDESQYNVAKPDAGRLELSLGEFESAKKASWKEW-----------MEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISN 1069 (1238)
T ss_pred HhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccc-----------hhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcc
Confidence 7766555433333333444455553332211110 01111111122222557999999999999999887
Q ss_pred ccc
Q 000191 1175 NFY 1177 (1888)
Q Consensus 1175 Si~ 1177 (1888)
+-.
T Consensus 1070 se~ 1072 (1238)
T KOG1127|consen 1070 SES 1072 (1238)
T ss_pred ccc
Confidence 643
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0001 Score=71.77 Aligned_cols=83 Identities=25% Similarity=0.368 Sum_probs=64.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 000191 948 TGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAM 1027 (1888)
Q Consensus 948 lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~ 1027 (1888)
+|+|+.|+.++++++..... .+ ....+..||.+|+.+|+|++|+.++++ +.+. +........+|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--------~~~~~~~~l~a~ 66 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--------PSNPDIHYLLAR 66 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--------HCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--------CCCHHHHHHHHH
Confidence 68999999999999987421 22 445667799999999999999999998 3331 233555667799
Q ss_pred HHHHCCCHHHHHHHHHHH
Q 000191 1028 MEEGLGNVHVALRYLHKA 1045 (1888)
Q Consensus 1028 iy~~lG~yeeAle~LekA 1045 (1888)
++..+|+|++|+.+|++|
T Consensus 67 ~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 67 CLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHTT-HHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHhcC
Confidence 999999999999999875
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0012 Score=69.31 Aligned_cols=103 Identities=23% Similarity=0.217 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
..+.|-..|..+...|+++.|++.|.++|.+ -|..+.+|++.|..|..+|+.++|+.-+.+|+.+. |.
T Consensus 42 ~S~~LEl~~valaE~g~Ld~AlE~F~qal~l--------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~ 109 (175)
T KOG4555|consen 42 ASRELELKAIALAEAGDLDGALELFGQALCL--------APERASAYNNRAQALRLQGDDEEALDDLNKALELA----GD 109 (175)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHh--------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----Cc
Confidence 3455666688888999999999999999998 36678899999999999999999999999999985 44
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
.......+|..-|.+|..+|+.+.|..-|..|-.+
T Consensus 110 ~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 110 QTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred cchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 44455689999999999999999999999999876
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00035 Score=89.39 Aligned_cols=126 Identities=14% Similarity=0.200 Sum_probs=105.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 000191 942 AVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAAT 1021 (1888)
Q Consensus 942 A~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a 1021 (1888)
+++|..+||.-.=..+|+||.++.... .+.+...+|......++|.+|.+++++++++ .|....+
T Consensus 457 ~~lyc~LGDv~~d~s~yEkawElsn~~-------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~--------nplq~~~ 521 (777)
T KOG1128|consen 457 PRLYCLLGDVLHDPSLYEKAWELSNYI-------SARAQRSLALLILSNKDFSEADKHLERSLEI--------NPLQLGT 521 (777)
T ss_pred chhHHHhhhhccChHHHHHHHHHhhhh-------hHHHHHhhccccccchhHHHHHHHHHHHhhc--------CccchhH
Confidence 356667777777778888888886543 3456677888888899999999999999987 3667788
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1022 YINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1022 ~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
|+++|.+..++++++.|..+|..++.+. |..+.+++|++.+|..+|+-.+|...+++|++-
T Consensus 522 wf~~G~~ALqlek~q~av~aF~rcvtL~--------Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 522 WFGLGCAALQLEKEQAAVKAFHRCVTLE--------PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC 582 (777)
T ss_pred HHhccHHHHHHhhhHHHHHHHHHHhhcC--------CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence 9999999999999999999999988763 556789999999999999999999999999854
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.015 Score=67.45 Aligned_cols=160 Identities=18% Similarity=0.120 Sum_probs=115.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 000191 900 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS 979 (1888)
Q Consensus 900 G~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~a 979 (1888)
..+.+..|+.+-|..++++....+ |..-++...-|+.+...|.+++|+++|...+. .| |....+
T Consensus 59 ~IAAld~~~~~lAq~C~~~L~~~f--------p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~-------dd-pt~~v~ 122 (289)
T KOG3060|consen 59 FIAALDTGRDDLAQKCINQLRDRF--------PGSKRVGKLKAMLLEATGNYKEAIEYYESLLE-------DD-PTDTVI 122 (289)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhC--------CCChhHHHHHHHHHHHhhchhhHHHHHHHHhc-------cC-cchhHH
Confidence 456678899999888887755442 22234566778888889999999888876654 33 443444
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHH
Q 000191 980 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ 1059 (1888)
Q Consensus 980 y~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~ 1059 (1888)
|-.--.+...+|+.-+|++.+..-++.+ +....++..++.+|...|+|++|.-||++.+-+. |.
T Consensus 123 ~KRKlAilka~GK~l~aIk~ln~YL~~F--------~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~--------P~ 186 (289)
T KOG3060|consen 123 RKRKLAILKAQGKNLEAIKELNEYLDKF--------MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ--------PF 186 (289)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHh--------cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC--------CC
Confidence 4443345667888889998888777654 2335678889999999999999999999988653 33
Q ss_pred HHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHH
Q 000191 1060 TAASYHAIAIALSLME---AYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1060 tA~al~nLA~ay~~lG---dydeAle~lqkALeI~ 1091 (1888)
...++..+|.+++.+| ++..|..+|.+|+++.
T Consensus 187 n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 187 NPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 4455667787777665 5677889999998764
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.044 Score=72.53 Aligned_cols=262 Identities=13% Similarity=-0.044 Sum_probs=149.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHh-cCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000191 897 LESSKTALDKGKLEDAVTYGTKALAKLVAV-CGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 975 (1888)
Q Consensus 897 lelG~~~l~qGd~dEAie~~eeAL~l~eqi-~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ 975 (1888)
+..|.....+++|.+|..++.++......- .+......+.....-|.+....|++++|+.+.+.++...-. .....
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~---~~~~~ 495 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPE---AAYRS 495 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc---ccchh
Confidence 334566677899999999998887664431 01122234566667788999999999999999999886422 12233
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 976 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 1055 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~ 1055 (1888)
-+.++..+|.+.+-.|++++|+.+.+++.++.+.. +.. .....+.+..+.++..+|+ .+..-.+++....+.....
T Consensus 496 r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~-~~~-~l~~~~~~~~s~il~~qGq--~~~a~~~~~~~~~~~q~l~ 571 (894)
T COG2909 496 RIVALSVLGEAAHIRGELTQALALMQQAEQMARQH-DVY-HLALWSLLQQSEILEAQGQ--VARAEQEKAFNLIREQHLE 571 (894)
T ss_pred hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc-ccH-HHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHhh
Confidence 45788899999999999999999999999998764 222 2334556677999999993 3333333443333333222
Q ss_pred CcH---HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q 000191 1056 DHI---QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDA 1132 (1888)
Q Consensus 1056 d~~---~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~ 1132 (1888)
..+ ....++..+..+|.+ ++.+..-...++.+........+. .......|+.+....++.+++..........
T Consensus 572 q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~-~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 572 QKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLL-SRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred hcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 222 233344333444433 677777666666654333222221 1111124444433333333332211100000
Q ss_pred hhhhcCCccH-HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000191 1133 SIASKGHLSV-SDLLDYINPSHDTKGRNVSTLKRKTYV 1169 (1888)
Q Consensus 1133 ~~as~~~~sv-aelL~~Lg~~y~~qGdyeEAleyyeKA 1169 (1888)
......+... +.++.........+||+++|..+..+.
T Consensus 648 ~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 648 LLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred hcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 0111122222 222222223336789999998888773
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00095 Score=86.25 Aligned_cols=136 Identities=17% Similarity=0.163 Sum_probs=97.7
Q ss_pred HHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHH
Q 000191 938 YSLLAVVLYHTGD---FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTE--------LALKYVKRALYL 1006 (1888)
Q Consensus 938 y~~LA~ly~~lGd---yeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdye--------eALey~~kALeL 1006 (1888)
++..|.-|...++ +..|+.++++|+++ +|+.+.+|..||.+|.....+. .|.+...+++.+
T Consensus 342 ~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 342 LFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 3344444444443 77899999999987 6788888888888876654332 233333332221
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000191 1007 LHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQT 1086 (1888)
Q Consensus 1007 ~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqk 1086 (1888)
+..+....++.-+|.++...|++++|...|++|+++. + .+.+|..+|.+|...|++++|+++|++
T Consensus 414 ------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------p-s~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 414 ------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------M-SWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred ------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------C-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1123334667778999999999999999999999884 2 256889999999999999999999999
Q ss_pred HHHHHHHhcCCCCHH
Q 000191 1087 TLQILRAKLGPDDLR 1101 (1888)
Q Consensus 1087 ALeI~kk~LG~dh~~ 1101 (1888)
|+. +.+.++.
T Consensus 479 A~~-----L~P~~pt 488 (517)
T PRK10153 479 AFN-----LRPGENT 488 (517)
T ss_pred HHh-----cCCCCch
Confidence 984 4677663
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00083 Score=78.19 Aligned_cols=162 Identities=19% Similarity=0.164 Sum_probs=116.6
Q ss_pred HHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 000191 904 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 983 (1888)
Q Consensus 904 l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nL 983 (1888)
+...+|.+|++++.--. ...|.....+..||.+|++..+|..|...|.+...+ +|........-
T Consensus 21 I~d~ry~DaI~~l~s~~--------Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~ 84 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSEL--------ERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQ 84 (459)
T ss_pred HHHhhHHHHHHHHHHHH--------hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHH
Confidence 45567777777665433 335656678999999999999999999999887654 56666666666
Q ss_pred HHHHHHcCCHHHHHHHHHH----------HHHHHHHh-cCCC-----------C--hhHHHHHHHHHHHHHHCCCHHHHH
Q 000191 984 AVFYYRLQHTELALKYVKR----------ALYLLHLT-CGPS-----------H--PNTAATYINVAMMEEGLGNVHVAL 1039 (1888)
Q Consensus 984 A~ly~~lGdyeeALey~~k----------ALeL~~ki-~G~d-----------h--P~~a~a~~NLA~iy~~lG~yeeAl 1039 (1888)
|..++..+.+..|+..... .+.+-..+ +..+ - ...+.+.+|.|.++.+.|+|+.|+
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHH
Confidence 7777777888777765433 22221111 1111 1 135677899999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000191 1040 RYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1040 e~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALe 1089 (1888)
+-|+.|++.. | -.+ ..-+++|.+++..|+|+.|+.+..+.++
T Consensus 165 qkFqaAlqvs----G-yqp---llAYniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 165 QKFQAALQVS----G-YQP---LLAYNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred HHHHHHHhhc----C-CCc---hhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 9999999873 2 222 3446789999999999999999877664
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.011 Score=68.54 Aligned_cols=156 Identities=14% Similarity=0.106 Sum_probs=113.4
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 000191 907 GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVF 986 (1888)
Q Consensus 907 Gd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~l 986 (1888)
.+-++-++++.+.+.....- ..-++....|-.+..+....|+.+-|...+++...- + |..-.....-|..
T Consensus 26 rnseevv~l~~~~~~~~k~~--~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~----f----p~S~RV~~lkam~ 95 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSG--ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR----F----PGSKRVGKLKAML 95 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhc--ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh----C----CCChhHHHHHHHH
Confidence 35566677777766654432 223445567778888888889999888777654332 2 2333444556888
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 000191 987 YYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHA 1066 (1888)
Q Consensus 987 y~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~n 1066 (1888)
+...|++++|+++|...++ ++|....++-.--.++..+|+--+|++.+.+-++.+ +....+++.
T Consensus 96 lEa~~~~~~A~e~y~~lL~--------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--------~~D~EAW~e 159 (289)
T KOG3060|consen 96 LEATGNYKEAIEYYESLLE--------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--------MNDQEAWHE 159 (289)
T ss_pred HHHhhchhhHHHHHHHHhc--------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--------cCcHHHHHH
Confidence 9999999999999998875 345555555555556677888889999888887765 234578999
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q 000191 1067 IAIALSLMEAYPLSVQHEQTTL 1088 (1888)
Q Consensus 1067 LA~ay~~lGdydeAle~lqkAL 1088 (1888)
||.+|...|+|++|.-+|++.+
T Consensus 160 LaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 160 LAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999999999999999887
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00024 Score=65.56 Aligned_cols=60 Identities=23% Similarity=0.475 Sum_probs=54.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000191 897 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964 (1888)
Q Consensus 897 lelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I 964 (1888)
+.+|..++..|++++|+..|++++.. +|....++..+|.+++.+|++++|+.+|++++.+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999865 6788899999999999999999999999999986
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0045 Score=83.67 Aligned_cols=164 Identities=16% Similarity=0.046 Sum_probs=123.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 000191 901 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSY 980 (1888)
Q Consensus 901 ~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay 980 (1888)
..+++.+++++|.+.+++||....-.-+..-..++.+|.||-+.| |.-+.-.+.|++|++++. ....|
T Consensus 1466 af~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~kVFeRAcqycd---------~~~V~ 1533 (1710)
T KOG1070|consen 1466 AFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLKKVFERACQYCD---------AYTVH 1533 (1710)
T ss_pred HHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHHHHHHHHHHhcc---------hHHHH
Confidence 566788999999999999998642111122233456666666655 455666678888888753 34678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 000191 981 GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT 1060 (1888)
Q Consensus 981 ~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~t 1060 (1888)
..|.-+|...+++++|.++|+..++-+ + ....+|..+|..+..+.+-+.|...+.+||....+. +|
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF----~----q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~---eH--- 1599 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKF----G----QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ---EH--- 1599 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHh----c----chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh---hh---
Confidence 899999999999999999999887654 2 245677888999999999999999999999987542 23
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1061 AASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1061 A~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
.......|++-++.|+.+.+...|+..+..
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~a 1629 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSA 1629 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhh
Confidence 345556799999999999888777766543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.22 Score=63.90 Aligned_cols=163 Identities=18% Similarity=0.114 Sum_probs=108.6
Q ss_pred hhHHHHhhhccchhhhcccHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCC
Q 000191 871 FRKIDVVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD 950 (1888)
Q Consensus 871 F~~eDIlnl~PvvK~~~~~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGd 950 (1888)
-+.+.+..+-|....- .........|..|...|+++.|...|++|+..- | ..-.+++.+|..-|..-....+
T Consensus 369 tyteAv~~vdP~ka~G----s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~---y-~~v~dLa~vw~~waemElrh~~ 440 (835)
T KOG2047|consen 369 TYTEAVKTVDPKKAVG----SPGTLWVEFAKLYENNGDLDDARVIFEKATKVP---Y-KTVEDLAEVWCAWAEMELRHEN 440 (835)
T ss_pred HHHHHHHccCcccCCC----ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC---c-cchHHHHHHHHHHHHHHHhhhh
Confidence 3444566666654322 224566777899999999999999999998751 1 1123568889999999999999
Q ss_pred HHHHHHHHHHHHHHHHH----hcCCCChhh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 000191 951 FNQATIYQQKALDINER----ELGLDHPDT------MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAA 1020 (1888)
Q Consensus 951 yeeAl~~~eKAL~I~Er----~lG~Dhp~t------a~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~ 1020 (1888)
++.|+.+.++|+.+-.. .+...+|-. ...+..++.+....|-++.....|.+.+++... .|.
T Consensus 441 ~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-----TPq--- 512 (835)
T KOG2047|consen 441 FEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-----TPQ--- 512 (835)
T ss_pred HHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-----CHH---
Confidence 99999999998765222 111222322 234555666677777777777778887776422 233
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 1021 TYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1021 a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
+..|.|+.+....-+++|.+.|++.+.++
T Consensus 513 ii~NyAmfLEeh~yfeesFk~YErgI~LF 541 (835)
T KOG2047|consen 513 IIINYAMFLEEHKYFEESFKAYERGISLF 541 (835)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHcCCccC
Confidence 34566777777777777777777666554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.017 Score=67.53 Aligned_cols=174 Identities=18% Similarity=0.210 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..|++.|...++.|++++|+.+|+.....+ +..+..-.+...++.+++..++|++|+.+..+-+..+ +.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-----p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-----P~ 103 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRH-----PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-----PT 103 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-----CC
Confidence 6789999999999999999999999876442 3445556789999999999999999999999888874 66
Q ss_pred ChhhHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHhcCCCChh--------------HHHHHHHHHHHHHHCC
Q 000191 973 HPDTMKSYGDLAVFYYRL-----QHTELALKYVKRALYLLHLTCGPSHPN--------------TAATYINVAMMEEGLG 1033 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~l-----GdyeeALey~~kALeL~~ki~G~dhP~--------------~a~a~~NLA~iy~~lG 1033 (1888)
|++...+++..|+.++.. .+...+...+...-++..+. ++.+- .+.--..+|..|.+.|
T Consensus 104 ~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~ 181 (254)
T COG4105 104 HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRG 181 (254)
T ss_pred CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888888888887654 22333333333322222221 22211 1222345788999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Q 000191 1034 NVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQH 1083 (1888)
Q Consensus 1034 ~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~ 1083 (1888)
.|-.|+..+++.++-+ ++...+-.++..|..+|..+|-.++|...
T Consensus 182 ~~~AA~nR~~~v~e~y-----~~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 182 AYVAAINRFEEVLENY-----PDTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred ChHHHHHHHHHHHhcc-----ccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 9999999999888765 34455667888899999999999988654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.018 Score=73.01 Aligned_cols=280 Identities=17% Similarity=0.110 Sum_probs=146.5
Q ss_pred hhcccHHHHHHHHHHHHHHHHcCChHHHHHHHHH------HHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHH
Q 000191 885 QAACSSADGRQLLESSKTALDKGKLEDAVTYGTK------ALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQ 958 (1888)
Q Consensus 885 ~~~~~s~~A~~LlelG~~~l~qGd~dEAie~~ee------AL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~ 958 (1888)
++....-.+..|-..|..|-...++++|+++|++ |+++.+-.+ ...+...-..-|.-+.+.|+++.|+.+|
T Consensus 653 ~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf---p~evv~lee~wg~hl~~~~q~daainhf 729 (1636)
T KOG3616|consen 653 HIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF---PEEVVKLEEAWGDHLEQIGQLDAAINHF 729 (1636)
T ss_pred HHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC---cHHHhhHHHHHhHHHHHHHhHHHHHHHH
Confidence 3333333344444445666777888999988875 444433322 2223333344466677788888888776
Q ss_pred HHH-------------------HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH------HHH--------
Q 000191 959 QKA-------------------LDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKR------ALY-------- 1005 (1888)
Q Consensus 959 eKA-------------------L~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~k------ALe-------- 1005 (1888)
-+| +.+.+.+. |.......|..+|.-|...|+|+-|.++|-+ |+.
T Consensus 730 iea~~~~kaieaai~akew~kai~ildniq--dqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 730 IEANCLIKAIEAAIGAKEWKKAISILDNIQ--DQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHhhhHHHHHHHHhhhhhhhhhHhHHHHhh--hhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccH
Confidence 543 22222111 1111223455677778888888888776643 333
Q ss_pred -----HHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHH------HHHHHHHHHhc---------CCCcHH-HHHHH
Q 000191 1006 -----LLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYL------HKALKCNQRLL---------GPDHIQ-TAASY 1064 (1888)
Q Consensus 1006 -----L~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~L------ekALei~ek~~---------G~d~~~-tA~al 1064 (1888)
+..+..|+ ..+...|..-|.-+...|+|.+|.++| .+|+.++.+.- +..|+. ...++
T Consensus 808 ~da~kla~e~~~~--e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~ 885 (1636)
T KOG3616|consen 808 EDAFKLAEECHGP--EATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTH 885 (1636)
T ss_pred HHHHHHHHHhcCc--hhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHH
Confidence 33333333 235566777777788889988888776 46666654431 111111 23455
Q ss_pred HHHHHHHHHcCChHHHHHHHHH-------------------HHHHHHHhcCCCCHHHHHHHHHHHHH--------HHHHH
Q 000191 1065 HAIAIALSLMEAYPLSVQHEQT-------------------TLQILRAKLGPDDLRTQDAAAWLEYF--------ESKAF 1117 (1888)
Q Consensus 1065 ~nLA~ay~~lGdydeAle~lqk-------------------ALeI~kk~LG~dh~~tl~a~~~La~L--------~qka~ 1117 (1888)
..+|.-|...|+.+.|..+|.+ |+.|.+...|.+-.. ..+..|...+ ..+.+
T Consensus 886 ~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k-~v~flwaksiggdaavkllnk~g 964 (1636)
T KOG3616|consen 886 KHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEK-HVAFLWAKSIGGDAAVKLLNKHG 964 (1636)
T ss_pred HHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHH-HHHHHHHHhhCcHHHHHHHHhhh
Confidence 5677777777777777666554 444444444443221 1122222111 11111
Q ss_pred HHHHHHH----hcCCCCc---hhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000191 1118 EQQEAAR----NGTRKPD---ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1118 e~AeAl~----~~~~~~~---~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
-...+.. ....... ..++.++ ...++...++..+...|++++|-++|-.++++..
T Consensus 965 ll~~~id~a~d~~afd~afdlari~~k~--k~~~vhlk~a~~ledegk~edaskhyveaiklnt 1026 (1636)
T KOG3616|consen 965 LLEAAIDFAADNCAFDFAFDLARIAAKD--KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNT 1026 (1636)
T ss_pred hHHHHhhhhhcccchhhHHHHHHHhhhc--cCccchhHHhhhhhhccchhhhhHhhHHHhhccc
Confidence 1111000 0000000 0111111 2233455667777889999999999999998753
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0035 Score=65.82 Aligned_cols=99 Identities=23% Similarity=0.271 Sum_probs=86.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000191 938 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN 1017 (1888)
Q Consensus 938 y~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~ 1017 (1888)
+-.-|.++...|+.+.|++.|.+|+.++ |..+.+|+|-|..|..+|+.++|+.-+++|+++. |+....
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~trt 113 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQTRT 113 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----CccchH
Confidence 4445677788899999999999999985 5678899999999999999999999999999984 444455
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000191 1018 TAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 1018 ~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
...++...|.+|..+|+.+.|..-|+.|-++
T Consensus 114 acqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 114 ACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 6678899999999999999999999998876
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0054 Score=69.28 Aligned_cols=205 Identities=12% Similarity=0.031 Sum_probs=133.0
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000191 931 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010 (1888)
Q Consensus 931 hpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki 1010 (1888)
..+.+..++..|.+|-.+|-..-|.--+.+++.+ .|.....++.||..+...|+|+.|.+.|...+++
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL---- 128 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL---- 128 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc----
Confidence 3455777888899999999999999999999988 5788899999999999999999999999998886
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1011 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1011 ~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
+|..-.+..|.|..+.--|+|+.|.+-+.+-... .+++|..+.-++ +-...-+..+|...+.+-.+
T Consensus 129 ----Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-----D~~DPfR~LWLY----l~E~k~dP~~A~tnL~qR~~- 194 (297)
T COG4785 129 ----DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-----DPNDPFRSLWLY----LNEQKLDPKQAKTNLKQRAE- 194 (297)
T ss_pred ----CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-----CCCChHHHHHHH----HHHhhCCHHHHHHHHHHHHH-
Confidence 4566677888999999999999998866543322 244554332221 11223355666655433221
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000191 1091 LRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVA 1170 (1888)
Q Consensus 1091 ~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKAL 1170 (1888)
.+..+...+.....+|..+..+.. .+.+...+. +...... .+.++|+++|..|...|+.++|...|+-|+
T Consensus 195 ---~~d~e~WG~~iV~~yLgkiS~e~l--~~~~~a~a~--~n~~~Ae---~LTEtyFYL~K~~l~~G~~~~A~~LfKLai 264 (297)
T COG4785 195 ---KSDKEQWGWNIVEFYLGKISEETL--MERLKADAT--DNTSLAE---HLTETYFYLGKYYLSLGDLDEATALFKLAV 264 (297)
T ss_pred ---hccHhhhhHHHHHHHHhhccHHHH--HHHHHhhcc--chHHHHH---HHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 111111112222222332221111 111111111 1111111 466799999999999999999999999877
Q ss_pred H
Q 000191 1171 K 1171 (1888)
Q Consensus 1171 e 1171 (1888)
.
T Consensus 265 a 265 (297)
T COG4785 265 A 265 (297)
T ss_pred H
Confidence 5
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.016 Score=69.43 Aligned_cols=141 Identities=21% Similarity=0.174 Sum_probs=97.1
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHh--cCCCChh----
Q 000191 903 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG-DFNQATIYQQKALDINERE--LGLDHPD---- 975 (1888)
Q Consensus 903 ~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lG-dyeeAl~~~eKAL~I~Er~--lG~Dhp~---- 975 (1888)
.+.+|+++.|..++.++-.+............+..+++.|.-.+..+ ++++|..++++|+++++.. ....+++
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46789999999999999887642222223456888999999999999 9999999999999998651 1223333
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000191 976 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
...++..|+.+|...+.++...+ ..+++...+.-+| +||.+... .+-.+. ..++.+++.+.+.+.+.-
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~~~~L--~l~il~-~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPEVFLL--KLEILL-KSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcHHHHH--HHHHHh-ccCChhHHHHHHHHHHHh
Confidence 34678889999999888765444 4445555544333 45554322 222222 277888888888777654
|
It is also involved in sporulation []. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00045 Score=63.75 Aligned_cols=60 Identities=33% Similarity=0.464 Sum_probs=54.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 939 SLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 939 ~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
+.+|..++..|++++|+..|++++.. +|....++..+|.++..+|++++|+.+|++++.+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35899999999999999999999874 5888999999999999999999999999999975
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.031 Score=66.85 Aligned_cols=129 Identities=22% Similarity=0.178 Sum_probs=84.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----------HHHH
Q 000191 898 ESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD----------INER 967 (1888)
Q Consensus 898 elG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~----------I~Er 967 (1888)
-+|..++..|+|++|+..|.-+... ++ -.+....+||.+++.+|.|.+|.....+|-. ++-+
T Consensus 62 Wia~C~fhLgdY~~Al~~Y~~~~~~-------~~-~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahk 133 (557)
T KOG3785|consen 62 WIAHCYFHLGDYEEALNVYTFLMNK-------DD-APAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHK 133 (557)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhcc-------CC-CCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Confidence 3578888999999999988776542 12 2246788999999999999999887766511 1111
Q ss_pred hcCCC---------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHH
Q 000191 968 ELGLD---------HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVA 1038 (1888)
Q Consensus 968 ~lG~D---------hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeA 1038 (1888)
. +.. -.++..-...||.+++.+-.|++|++.|.+.+. +.|.....-.++|.+|.++.-|+-+
T Consensus 134 l-ndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~--------dn~ey~alNVy~ALCyyKlDYydvs 204 (557)
T KOG3785|consen 134 L-NDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ--------DNPEYIALNVYMALCYYKLDYYDVS 204 (557)
T ss_pred h-CcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh--------cChhhhhhHHHHHHHHHhcchhhhH
Confidence 1 110 012223345567777777778888887777764 3566666666677777777777766
Q ss_pred HHHHH
Q 000191 1039 LRYLH 1043 (1888)
Q Consensus 1039 le~Le 1043 (1888)
.+.+.
T Consensus 205 qevl~ 209 (557)
T KOG3785|consen 205 QEVLK 209 (557)
T ss_pred HHHHH
Confidence 55543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0068 Score=78.25 Aligned_cols=147 Identities=20% Similarity=0.102 Sum_probs=111.9
Q ss_pred ccHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 000191 888 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 967 (1888)
Q Consensus 888 ~~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er 967 (1888)
+.+.....++.+|+.|-..|++++|++++++|+.. .|.....|...|.+|-+.|++.+|...++.|-.+-
T Consensus 189 ~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-- 258 (517)
T PF12569_consen 189 PPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-- 258 (517)
T ss_pred CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC--
Confidence 33445677888899999999999999999999986 57778899999999999999999999999887651
Q ss_pred hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-CC-C---ChhHHHHHHHHHHHHHHCCCHHHHHHHH
Q 000191 968 ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC-GP-S---HPNTAATYINVAMMEEGLGNVHVALRYL 1042 (1888)
Q Consensus 968 ~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~-G~-d---hP~~a~a~~NLA~iy~~lG~yeeAle~L 1042 (1888)
..--..-...+.++.+.|+.++|.+.+..-. .-. ++ . .-...+.....|.+|.++|++..|+..|
T Consensus 259 ------~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ft----r~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~ 328 (517)
T PF12569_consen 259 ------LADRYINSKCAKYLLRAGRIEEAEKTASLFT----REDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRF 328 (517)
T ss_pred ------hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhc----CCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 1111233456778889999999987654322 111 00 0 1122445567799999999999999999
Q ss_pred HHHHHHHHHhcC
Q 000191 1043 HKALKCNQRLLG 1054 (1888)
Q Consensus 1043 ekALei~ek~~G 1054 (1888)
...++++.....
T Consensus 329 ~~v~k~f~~~~~ 340 (517)
T PF12569_consen 329 HAVLKHFDDFEE 340 (517)
T ss_pred HHHHHHHHHHhc
Confidence 999999887743
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0014 Score=76.84 Aligned_cols=105 Identities=20% Similarity=0.227 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+..+|+.|..++..|+|.+|...|..-+..+ +.....+.++++||.+++.+|+|+.|...|..++.- -+
T Consensus 140 ~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-----~P 209 (262)
T COG1729 140 PATKLYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-----YP 209 (262)
T ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-----CC
Confidence 45669999999999999999999999888763 667788899999999999999999999999988874 36
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
+++....+++.||.+...+|+.++|-..|++.+.-
T Consensus 210 ~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 210 KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 78888899999999999999999999999998874
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00058 Score=84.85 Aligned_cols=72 Identities=22% Similarity=0.175 Sum_probs=64.6
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
..|....+++|+|..|+.+|+|++|+.+|++|+++ .++++....+|+|+|.+|..+|++++|+.+|++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35778899999999999999999999999999997 4555555567999999999999999999999999997
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.016 Score=66.39 Aligned_cols=140 Identities=16% Similarity=0.192 Sum_probs=98.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 000191 941 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAA 1020 (1888)
Q Consensus 941 LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~ 1020 (1888)
-|.+|....++..|-..|.+|-.+..+. | +..+.+.+|...+.+|... +.++|..++++|++|+... |. -...+.
T Consensus 40 Aan~yklaK~w~~AG~aflkaA~~h~k~-~-skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~-Gr-f~~aAk 114 (288)
T KOG1586|consen 40 AANMYKLAKNWSAAGDAFLKAADLHLKA-G-SKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDM-GR-FTMAAK 114 (288)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhc-C-CchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhh-hH-HHHHHh
Confidence 3444555556666666677776665553 2 3345677888877777655 9999999999999998764 21 223455
Q ss_pred HHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000191 1021 TYINVAMMEEGL-GNVHVALRYLHKALKCNQRLLGPDHIQ-TAASYHAIAIALSLMEAYPLSVQHEQTTL 1088 (1888)
Q Consensus 1021 a~~NLA~iy~~l-G~yeeAle~LekALei~ek~~G~d~~~-tA~al~nLA~ay~~lGdydeAle~lqkAL 1088 (1888)
-+..||.+|..- .++++|+.+|++|-+.+.. ..... .-.++...|..-..+++|.+|+..|++..
T Consensus 115 ~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~---ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva 181 (288)
T KOG1586|consen 115 HHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG---EESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVA 181 (288)
T ss_pred hhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567789998754 8999999999999887642 22222 23567777888888899999988887654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.003 Score=78.90 Aligned_cols=116 Identities=24% Similarity=0.204 Sum_probs=96.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 000191 901 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSY 980 (1888)
Q Consensus 901 ~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay 980 (1888)
..+...++++.|+.++++.... +|+ +...||.+|...++..+|+.++++++.. .|.....+
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~--------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~LL 237 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRER--------DPE---VAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSELL 237 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhc--------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHHHH
Confidence 3444567889888888875443 344 4566899999999999999999999953 34557788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 000191 981 GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLH 1043 (1888)
Q Consensus 981 ~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~Le 1043 (1888)
...|.++...++++.|+.+.++|..+ .|....+|..||.+|..+|+|+.|+..++
T Consensus 238 ~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 238 NLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 88999999999999999999999986 37788999999999999999999997665
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0093 Score=73.66 Aligned_cols=199 Identities=17% Similarity=0.100 Sum_probs=147.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhcCC--CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 000191 900 SKTALDKGKLEDAVTYGTKALAKLVAVCGP--YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM 977 (1888)
Q Consensus 900 G~~~l~qGd~dEAie~~eeAL~l~eqi~G~--dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta 977 (1888)
...-+-.|++.+|++-...+.+.+.+.-++ .....+...+.+|......+.|+.|...|..|+...+.. .-.+
T Consensus 330 v~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~a 404 (629)
T KOG2300|consen 330 VMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQA 404 (629)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHHH
Confidence 344566899999999999999888776442 222346677888888888999999999999999886542 2245
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000191 978 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH-------PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 978 ~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dh-------P~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
.+-.|||..|.+.++-+. +.++++.. |+.| -..+.+++-.|.....++++.||..++++.|++..
T Consensus 405 ~~nlnlAi~YL~~~~~ed----~y~~ld~i----~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkman 476 (629)
T KOG2300|consen 405 FCNLNLAISYLRIGDAED----LYKALDLI----GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMAN 476 (629)
T ss_pred HHHHhHHHHHHHhccHHH----HHHHHHhc----CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc
Confidence 666789999999876543 34444432 3332 23456777788888999999999999999999873
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 000191 1051 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESK 1115 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qk 1115 (1888)
.. .....++..+..|+.+..-.|+..++.+..+-+++..++. +|++-.+.....+..+.+.
T Consensus 477 ae--d~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi--~Di~vqLws~si~~~L~~a 537 (629)
T KOG2300|consen 477 AE--DLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI--PDIPVQLWSSSILTDLYQA 537 (629)
T ss_pred hh--hHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC--CCchHHHHHHHHHHHHHHH
Confidence 21 2234567778889999999999999999999999998775 6777666666655555443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0003 Score=58.76 Aligned_cols=42 Identities=31% Similarity=0.406 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000191 976 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN 1017 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~ 1017 (1888)
++.++++||.+|..+|++++|+.++++++.+.+.++|++||+
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 467899999999999999999999999999999999999985
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00068 Score=84.28 Aligned_cols=72 Identities=18% Similarity=0.138 Sum_probs=64.0
Q ss_pred CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 930 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 930 dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
..|..+.+++++|.+|+.+|+|++|+..|++||.+ .+++.....+|+|+|.+|..+|++++|+.+|++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35677889999999999999999999999999998 3444444467999999999999999999999999986
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0032 Score=73.90 Aligned_cols=102 Identities=22% Similarity=0.177 Sum_probs=92.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000191 938 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN 1017 (1888)
Q Consensus 938 y~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~ 1017 (1888)
+++.|.-++..|+|..|...|++-+.- .+++..+..+++.||.+++.+|+|+.|...|..+..- -++||.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-----~P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-----YPKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-----CCCCCC
Confidence 788899999999999999999988876 4678889999999999999999999999999998874 367888
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 1018 TAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1018 ~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
...+++.||.++.++|+.++|...|++.++-+
T Consensus 214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 88999999999999999999999999988765
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.021 Score=60.76 Aligned_cols=172 Identities=26% Similarity=0.291 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAV-VLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~-ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
....++..+..+...+++..|+..+.+++.... .. .......+. ++...|+++.|..++.+++...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----- 160 (291)
T COG0457 94 LAEALLNLGLLLEALGKYEEALELLEKALALDP------DP--DLAEALLALGALYELGDYEEALELYEKALELD----- 160 (291)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCC------Cc--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----
Confidence 355566677777788888888888888776421 11 123333444 8999999999999999995521
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000191 971 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
.........+..++..+...++++.|+..+.+++...... ....+.+++..+...+++++|+..+..++....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 233 (291)
T COG0457 161 PELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-------DAEALLNLGLLYLKLGKYEEALEYYEKALELDP 233 (291)
T ss_pred CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc
Confidence 1012455666777777889999999999999999864321 456788899999999999999999999998753
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000191 1051 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
. ....+..++..+...+.++.|...+.+++...
T Consensus 234 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 234 D--------NAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred c--------cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 2 34556667777777778999999888887654
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00051 Score=57.41 Aligned_cols=42 Identities=43% Similarity=0.566 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000191 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 975 (1888)
Q Consensus 934 ~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ 975 (1888)
++.++.+||.+|..+|++++|+.++++++.+.++++|.+||+
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 367899999999999999999999999999999999999985
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0025 Score=76.81 Aligned_cols=168 Identities=14% Similarity=0.058 Sum_probs=111.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 000191 897 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 976 (1888)
Q Consensus 897 lelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~t 976 (1888)
+-.|.+++..|++++|+.++.+. ....+...+-.+|..+++++.|...++++-.+ .. +.
T Consensus 106 ~~~A~i~~~~~~~~~AL~~l~~~-------------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-----~e---D~ 164 (290)
T PF04733_consen 106 LLAATILFHEGDYEEALKLLHKG-------------GSLELLALAVQILLKMNRPDLAEKELKNMQQI-----DE---DS 164 (290)
T ss_dssp HHHHHHHCCCCHHHHHHCCCTTT-------------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-----SC---CH
T ss_pred HHHHHHHHHcCCHHHHHHHHHcc-------------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CC---cH
Confidence 44567777889999888877653 12356667778999999999999877665432 22 23
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 000191 977 MKSYGDLAVFYYRLQ--HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054 (1888)
Q Consensus 977 a~ay~nLA~ly~~lG--dyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G 1054 (1888)
..+..-.|++....| ++.+|..+|++... ..+....+++.+|.++..+|+|++|...+++|+..
T Consensus 165 ~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--------~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~------ 230 (290)
T PF04733_consen 165 ILTQLAEAWVNLATGGEKYQDAFYIFEELSD--------KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK------ 230 (290)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--------CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--------ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------
Confidence 333344455555555 58888888887432 12344677889999999999999999999998753
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 000191 1055 PDHIQTAASYHAIAIALSLMEAYPL-SVQHEQTTLQILRAKLGPDDLRTQDAA 1106 (1888)
Q Consensus 1055 ~d~~~tA~al~nLA~ay~~lGdyde-Ale~lqkALeI~kk~LG~dh~~tl~a~ 1106 (1888)
.+....++.|++.+...+|+..+ +.+++.+.. ...++|+.+....
T Consensus 231 --~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~-----~~~p~h~~~~~~~ 276 (290)
T PF04733_consen 231 --DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK-----QSNPNHPLVKDLA 276 (290)
T ss_dssp ---CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH-----HHTTTSHHHHHHH
T ss_pred --ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH-----HhCCCChHHHHHH
Confidence 23456678899999999999844 444444332 2357887665443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.024 Score=66.20 Aligned_cols=259 Identities=14% Similarity=0.012 Sum_probs=159.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH----HHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-------
Q 000191 897 LESSKTALDKGKLEDAVTYGTKALAK----LVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN------- 965 (1888)
Q Consensus 897 lelG~~~l~qGd~dEAie~~eeAL~l----~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~------- 965 (1888)
+++|+......++++|+..|.+.|.. -+.. -.+.-.+...|+.+|...|++..--+.....-...
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~----~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k 82 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKT----LNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPK 82 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhh----hhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchh
Confidence 56677778889999999999888864 1111 11233567789999999998754332222211111
Q ss_pred ---------HHhcCC-CCh-hh--------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 966 ---------ERELGL-DHP-DT--------------------MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 1014 (1888)
Q Consensus 966 ---------Er~lG~-Dhp-~t--------------------a~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~d 1014 (1888)
++.-+. |+. +. ...-..+..+|+..|+|.+|+....-.+.-+++. .+
T Consensus 83 ~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~--DD 160 (421)
T COG5159 83 ITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY--DD 160 (421)
T ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh--cC
Confidence 111111 110 00 1122456788899999999999988888776664 34
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000191 1015 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT-AASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 1093 (1888)
Q Consensus 1015 hP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~t-A~al~nLA~ay~~lGdydeAle~lqkALeI~kk 1093 (1888)
.+.....+..-..+|....+..++..-+..|-......+-+ ++. +..-..-|.+++...+|.-|..||-+|++-|.
T Consensus 161 K~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCP--pqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft- 237 (421)
T COG5159 161 KINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCP--PQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFT- 237 (421)
T ss_pred ccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCC--HHHHHHHHHhccceeeccccchhHHHHHHHHHhccc-
Confidence 56666777777888999888888888887776665554433 222 22222335566677899999999999998884
Q ss_pred hcCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHH--HHcCChHHHHHHHHHH
Q 000191 1094 KLGPDDLRTQDAAAWLE--YFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSH--DTKGRNVSTLKRKTYV 1169 (1888)
Q Consensus 1094 ~LG~dh~~tl~a~~~La--~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y--~~qGdyeEAleyyeKA 1169 (1888)
++..|.....++.++. .+.....+...+......... .......+++..++.+| +...+|..|++-|..-
T Consensus 238 -~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~-----~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~e 311 (421)
T COG5159 238 -LLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLK-----HYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDE 311 (421)
T ss_pred -cccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHh-----hhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHH
Confidence 4567766665555543 334444444444433322111 01113345667777777 4467788888887654
Q ss_pred H
Q 000191 1170 A 1170 (1888)
Q Consensus 1170 L 1170 (1888)
+
T Consensus 312 l 312 (421)
T COG5159 312 L 312 (421)
T ss_pred h
Confidence 4
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.2 Score=64.21 Aligned_cols=193 Identities=15% Similarity=0.141 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 978 KSYGDLAVFYYRLQHTELALKYVKR------ALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 978 ~ay~nLA~ly~~lGdyeeALey~~k------ALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
..|-..|.+|....++++|++||++ |+++.+..+. ..+...--..|.-+..+|+++.|+..|-+|-.+.+.
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp---~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka 738 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFP---EEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA 738 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCc---HHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence 3456678888889999999999875 6666554331 223333444577778888888888777554332211
Q ss_pred ---hcCCC-------------cHHH-HHHHHHHHHHHHHcCChHHHHHHHHHH-------------------HHHHHHhc
Q 000191 1052 ---LLGPD-------------HIQT-AASYHAIAIALSLMEAYPLSVQHEQTT-------------------LQILRAKL 1095 (1888)
Q Consensus 1052 ---~~G~d-------------~~~t-A~al~nLA~ay~~lGdydeAle~lqkA-------------------LeI~kk~L 1095 (1888)
..|.. ...+ ...|-.+|.-|...|+|+.|.++|.++ ..+..+..
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~ 818 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECH 818 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhc
Confidence 11111 1111 223446777888888888888877553 22222333
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh---------------hhhcCCc-cHHHHHHHHHHHHHHcCCh
Q 000191 1096 GPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDAS---------------IASKGHL-SVSDLLDYINPSHDTKGRN 1159 (1888)
Q Consensus 1096 G~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~---------------~as~~~~-svaelL~~Lg~~y~~qGdy 1159 (1888)
|+...........-..-.++.+..++.++.....++.. +..+.|. .+.+....++.-|...|+.
T Consensus 819 ~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~l 898 (1636)
T KOG3616|consen 819 GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDL 898 (1636)
T ss_pred CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccCh
Confidence 33322211111111111222233333222222222211 1122222 3556777888888888988
Q ss_pred HHHHHHHHHHHHHh
Q 000191 1160 VSTLKRKTYVAKVK 1173 (1888)
Q Consensus 1160 eEAleyyeKALeL~ 1173 (1888)
..|...|-+|-..+
T Consensus 899 kaae~~flea~d~k 912 (1636)
T KOG3616|consen 899 KAAEEHFLEAGDFK 912 (1636)
T ss_pred hHHHHHHHhhhhHH
Confidence 88888776665443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0046 Score=77.23 Aligned_cols=118 Identities=16% Similarity=0.121 Sum_probs=95.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 000191 941 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAA 1020 (1888)
Q Consensus 941 LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~ 1020 (1888)
|-.++...++++.|+.++++.... +|+ ....||.++...++-.+|++++++++.. .|....
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~--------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~ 235 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRER--------DPE---VAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSE 235 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhc--------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHH
Confidence 445556678888888887775432 344 3455899999999999999999999952 355577
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000191 1021 TYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 1085 (1888)
Q Consensus 1021 a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lq 1085 (1888)
.+...|..|...++++.|+.+.++|..+. |....+++.||.+|..+|+|+.|+..+.
T Consensus 236 LL~~Qa~fLl~k~~~~lAL~iAk~av~ls--------P~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 236 LLNLQAEFLLSKKKYELALEIAKKAVELS--------PSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 78889999999999999999999999884 5667889999999999999999997665
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0024 Score=70.15 Aligned_cols=101 Identities=12% Similarity=-0.029 Sum_probs=82.8
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000191 889 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 968 (1888)
Q Consensus 889 ~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~ 968 (1888)
.......+|..|..++++|++++|..+|+-.... ++.....+..||.++..+++|++|+..|-.|..+.
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--- 101 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--- 101 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 4455778888999999999999999999765432 23334568999999999999999999999988763
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000191 969 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALY 1005 (1888)
Q Consensus 969 lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALe 1005 (1888)
.++| ..++.+|.||..+|+.+.|+.+|..++.
T Consensus 102 --~~dp---~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 102 --KNDY---RPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred --cCCC---CccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 3333 3468899999999999999999999987
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.026 Score=64.73 Aligned_cols=176 Identities=14% Similarity=0.025 Sum_probs=116.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000191 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 975 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ 975 (1888)
+...|..|....+++.|=..|.+|-.+..+. | ...+.+.+|...+.+|..- +..+|+..+++|++|+.+.. . -..
T Consensus 37 ~~~Aan~yklaK~w~~AG~aflkaA~~h~k~-~-skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~G-r-f~~ 111 (288)
T KOG1586|consen 37 YERAANMYKLAKNWSAAGDAFLKAADLHLKA-G-SKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMG-R-FTM 111 (288)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc-C-CchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhh-H-HHH
Confidence 3344566666778888888999988887665 3 3335677887777777655 99999999999999987642 1 122
Q ss_pred hHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 000191 976 TMKSYGDLAVFYYRL-QHTELALKYVKRALYLLHLTCGPSH-PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 1053 (1888)
Q Consensus 976 ta~ay~nLA~ly~~l-GdyeeALey~~kALeL~~ki~G~dh-P~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~ 1053 (1888)
.+.-+..||.+|..- .++++|+.+|++|-+.+.. ... ...-.++...|..-..+++|.+|+..|++......
T Consensus 112 aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~---ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~--- 185 (288)
T KOG1586|consen 112 AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG---EESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSL--- 185 (288)
T ss_pred HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 345567899988766 9999999999999988743 221 22234556667777788999999999987765431
Q ss_pred CCCcHH-HH-HHHHHHHHHHHHcCChHHHHH
Q 000191 1054 GPDHIQ-TA-ASYHAIAIALSLMEAYPLSVQ 1082 (1888)
Q Consensus 1054 G~d~~~-tA-~al~nLA~ay~~lGdydeAle 1082 (1888)
+..-.. .+ ..++.-|.++....|.-.+..
T Consensus 186 ~n~LLKys~KdyflkAgLChl~~~D~v~a~~ 216 (288)
T KOG1586|consen 186 DNNLLKYSAKDYFLKAGLCHLCKADEVNAQR 216 (288)
T ss_pred cchHHHhHHHHHHHHHHHHhHhcccHHHHHH
Confidence 111111 12 223344555555566544433
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0049 Score=66.39 Aligned_cols=104 Identities=20% Similarity=0.317 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...++..|...++.|+|++|++.|+.....+ +..+....+...|+.+|+..+++++|+..+++-+.+ .+.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~ 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPT 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Confidence 5678999999999999999999998876653 334455678999999999999999999999999987 578
Q ss_pred ChhhHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHH
Q 000191 973 HPDTMKSYGDLAVFYYRLQH---------------TELALKYVKRALYL 1006 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGd---------------yeeALey~~kALeL 1006 (1888)
|+..-.+++..|++++.+.. ..+|+..|++.+..
T Consensus 80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999876 56666666666654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.036 Score=67.75 Aligned_cols=182 Identities=18% Similarity=0.084 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHH-------------
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQK------------- 960 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eK------------- 960 (1888)
-.++..++..+.+|++..|..-..+++.. +|....++....++|...|++.+...+..+
T Consensus 154 ~v~ltrarlll~~~d~~aA~~~v~~ll~~--------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~ 225 (400)
T COG3071 154 AVELTRARLLLNRRDYPAARENVDQLLEM--------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA 225 (400)
T ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHh--------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH
Confidence 34566788999999999999999888876 344445778888999999998877665433
Q ss_pred -----HHHHHHHhcCCC--Chh--------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH------H---h
Q 000191 961 -----ALDINERELGLD--HPD--------------TMKSYGDLAVFYYRLQHTELALKYVKRALYLLH------L---T 1010 (1888)
Q Consensus 961 -----AL~I~Er~lG~D--hp~--------------ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~------k---i 1010 (1888)
|..-.-+....+ ... ....-..+|.-+...|++++|.+..++++.-.. . .
T Consensus 226 ~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l 305 (400)
T COG3071 226 RLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRL 305 (400)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhc
Confidence 222110101110 000 122334567788899999999999888875311 0 0
Q ss_pred -cC-------------CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCC
Q 000191 1011 -CG-------------PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEA 1076 (1888)
Q Consensus 1011 -~G-------------~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGd 1076 (1888)
.+ ..||+....+..||..|.+.+.|.+|..+|+.|++... .+..+..+|.+|..+|+
T Consensus 306 ~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~---------s~~~~~~la~~~~~~g~ 376 (400)
T COG3071 306 RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP---------SASDYAELADALDQLGE 376 (400)
T ss_pred CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC---------ChhhHHHHHHHHHHcCC
Confidence 00 12555556777788888888888888888887776531 23456667888888888
Q ss_pred hHHHHHHHHHHHHHHH
Q 000191 1077 YPLSVQHEQTTLQILR 1092 (1888)
Q Consensus 1077 ydeAle~lqkALeI~k 1092 (1888)
..+|.+..++++..+.
T Consensus 377 ~~~A~~~r~e~L~~~~ 392 (400)
T COG3071 377 PEEAEQVRREALLLTR 392 (400)
T ss_pred hHHHHHHHHHHHHHhc
Confidence 8888888888885543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0097 Score=74.49 Aligned_cols=145 Identities=12% Similarity=-0.000 Sum_probs=105.9
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc---C------CHHHHHHHHHHHHHH
Q 000191 939 SLLAVVLYHTGD---FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRL---Q------HTELALKYVKRALYL 1006 (1888)
Q Consensus 939 ~~LA~ly~~lGd---yeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~l---G------dyeeALey~~kALeL 1006 (1888)
+..|......+. .+.|+.++.+|+... .-+|+.+.+|..+|.|++.. | ...+|+++.++|+++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel 333 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI 333 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc
Confidence 344444443333 356777788887332 23688899999999998766 1 234566666666664
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000191 1007 LHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQT 1086 (1888)
Q Consensus 1007 ~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqk 1086 (1888)
+ +..+.++..+|.++...++++.|+.+|++|+.+. |+.+.+++..|.++...|+.++|.+++++
T Consensus 334 -----d---~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--------Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 334 -----T---TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--------TDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred -----C---CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--------CccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2 3445677889999999999999999999999874 66788899999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHH
Q 000191 1087 TLQILRAKLGPDDLRTQDAAAWL 1109 (1888)
Q Consensus 1087 ALeI~kk~LG~dh~~tl~a~~~L 1109 (1888)
|+++ .|..........|+
T Consensus 398 alrL-----sP~~~~~~~~~~~~ 415 (458)
T PRK11906 398 SLQL-----EPRRRKAVVIKECV 415 (458)
T ss_pred Hhcc-----CchhhHHHHHHHHH
Confidence 9854 45544444455566
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.014 Score=69.39 Aligned_cols=120 Identities=21% Similarity=0.138 Sum_probs=91.3
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHH
Q 000191 931 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQ---HTELALKYVKRALYLL 1007 (1888)
Q Consensus 931 hpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lG---dyeeALey~~kALeL~ 1007 (1888)
+|..+.-|..||.+|+.+|++..|+..|++|+.+. ++....+..+|.+++.+. ...+|...+++++.+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--------g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~- 222 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--------GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL- 222 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-
Confidence 67788899999999999999999999999999983 334455666776666553 347888889998874
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 000191 1008 HLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIA 1070 (1888)
Q Consensus 1008 ~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~a 1070 (1888)
+|....+++.||..+...|+|.+|...++..|+.. .++.+....+-..++..
T Consensus 223 -------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l----p~~~~rr~~ie~~ia~~ 274 (287)
T COG4235 223 -------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL----PADDPRRSLIERSIARA 274 (287)
T ss_pred -------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC----CCCCchHHHHHHHHHHH
Confidence 34556788889999999999999999999988764 34444444444333433
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.39 Score=63.95 Aligned_cols=154 Identities=18% Similarity=0.119 Sum_probs=108.9
Q ss_pred hHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000191 933 MTAGAYSLLAVVLY-HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 1011 (1888)
Q Consensus 933 e~A~ay~~LA~ly~-~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~ 1011 (1888)
.-+.++..||.+|+ ...+++.|..++.|++.++++ .+.. ..-..+..-|+.+|...+... |+.++.++++.++. +
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~-d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~-~ 132 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLT-DLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET-Y 132 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchH-HHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc-c
Confidence 44788999999888 889999999999999999877 2221 122455566789999888887 99999999998765 2
Q ss_pred CCCChhHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1012 GPSHPNTAATYINV-AMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1012 G~dhP~~a~a~~NL-A~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
+ |......+.-+ ...+...+++..|++.++......... |. ......+....|.++...+..+++++.++++...
T Consensus 133 ~--~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~-~d-~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~ 208 (608)
T PF10345_consen 133 G--HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR-GD-PAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQ 208 (608)
T ss_pred C--chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc-CC-HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Confidence 2 33333333333 223333389999999999998887543 22 2233344445567777788888999999999776
Q ss_pred HHHh
Q 000191 1091 LRAK 1094 (1888)
Q Consensus 1091 ~kk~ 1094 (1888)
....
T Consensus 209 ~~~~ 212 (608)
T PF10345_consen 209 ARSL 212 (608)
T ss_pred Hhhc
Confidence 6643
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0036 Score=68.87 Aligned_cols=102 Identities=11% Similarity=-0.033 Sum_probs=83.4
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000191 931 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010 (1888)
Q Consensus 931 hpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki 1010 (1888)
..+.....+..|.-++..|++++|..+|+-.+.+ ++.....+..||.++..+++|++|+..|-.|..+.
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--- 101 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--- 101 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 4566778889999999999999999999866553 23335567899999999999999999999998753
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000191 1011 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 1011 ~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
.++|. ..+..|.+|..+|+.+.|+.+|+.++..
T Consensus 102 --~~dp~---p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 102 --KNDYR---PVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred --cCCCC---ccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 33343 2566899999999999999999998873
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.03 Score=58.20 Aligned_cols=122 Identities=23% Similarity=0.194 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHhcCC---CCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 933 MTAGAYSLLAVVLY--HTGDFNQATIYQQKALDINERELGL---DHP-DTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 933 e~A~ay~~LA~ly~--~lGdyeeAl~~~eKAL~I~Er~lG~---Dhp-~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
+++.+|..|+..-. .-|-|++|..-+++|+++.+.+... ||. ..+.++..|+-.+..+|+|++++.-..+||..
T Consensus 5 eVa~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 5 EVAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY 84 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 45667777765544 4588999999999999998655322 332 23577888999999999999999999999998
Q ss_pred HHHhcCCCChh----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 1007 LHLTCGPSHPN----TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 1055 (1888)
Q Consensus 1007 ~~ki~G~dhP~----~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~ 1055 (1888)
+... |.-|.+ ++.+-++.|..+..+|+.++|+..|+.+-++..+.-|.
T Consensus 85 FNRR-GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE 136 (144)
T PF12968_consen 85 FNRR-GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGE 136 (144)
T ss_dssp HHHH---TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S-
T ss_pred Hhhc-cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Confidence 8765 443433 45666788999999999999999999999988766543
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.019 Score=72.98 Aligned_cols=242 Identities=14% Similarity=0.136 Sum_probs=159.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 000191 901 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSY 980 (1888)
Q Consensus 901 ~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay 980 (1888)
++-+..|+..+-+..|.+|+....-.. -+.....++..+|.+|...|+.+.|...+++|+.+--. .-.+++..|
T Consensus 355 RV~l~e~~~~~~i~tyteAv~~vdP~k--a~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~----~v~dLa~vw 428 (835)
T KOG2047|consen 355 RVKLYEGNAAEQINTYTEAVKTVDPKK--AVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK----TVEDLAEVW 428 (835)
T ss_pred hhhhhcCChHHHHHHHHHHHHccCccc--CCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc----chHHHHHHH
Confidence 445567889999999999987532111 12233467889999999999999999999999886321 123568899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHH----HhcCCCChhH------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000191 981 GDLAVFYYRLQHTELALKYVKRALYLLH----LTCGPSHPNT------AATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 981 ~nLA~ly~~lGdyeeALey~~kALeL~~----ki~G~dhP~~------a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
.+.|.......+++.|++++++|..+=. ..+...+|-- ..++..++......|-++.....|++.+++.
T Consensus 429 ~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr- 507 (835)
T KOG2047|consen 429 CAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR- 507 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh-
Confidence 9999999999999999999999986422 1233334432 3456666777778888888888888888874
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-------HHHHHHHHH
Q 000191 1051 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES-------KAFEQQEAA 1123 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~q-------ka~e~AeAl 1123 (1888)
+.+..+..|.|..+....-|++|.+.|++.+.+|+ .+... -.|..|++. ...+.+.-+
T Consensus 508 -------iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk------~p~v~--diW~tYLtkfi~rygg~klEraRdL 572 (835)
T KOG2047|consen 508 -------IATPQIIINYAMFLEEHKYFEESFKAYERGISLFK------WPNVY--DIWNTYLTKFIKRYGGTKLERARDL 572 (835)
T ss_pred -------cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC------CccHH--HHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 23445566778888888888999999998887763 12222 223333322 122333333
Q ss_pred HhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000191 1124 RNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVA 1170 (1888)
Q Consensus 1124 ~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKAL 1170 (1888)
.+.+...-+ ......+|...+.....-|--..|+..|++|.
T Consensus 573 FEqaL~~Cp------p~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 573 FEQALDGCP------PEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHhcCC------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 322221111 11223355555666666687778888887764
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.091 Score=58.65 Aligned_cols=150 Identities=16% Similarity=0.111 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 936 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 1015 (1888)
Q Consensus 936 ~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dh 1015 (1888)
.-...||..+..+|++.+|..+|++++. |.- ......+..||...+..+++..|...+++..+.--. . ..
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qals------G~f-A~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa-~--r~ 159 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALS------GIF-AHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA-F--RS 159 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhc------ccc-CCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc-c--CC
Confidence 4567799999999999999999999986 321 233456778999999999999999998887764211 1 11
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 000191 1016 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL 1095 (1888)
Q Consensus 1016 P~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~L 1095 (1888)
| ....-+|..|..+|++.+|...|+.++..+ ++ ..+.++ .+..+..+|+.++|...+....+-..
T Consensus 160 p---d~~Ll~aR~laa~g~~a~Aesafe~a~~~y-----pg--~~ar~~--Y~e~La~qgr~~ea~aq~~~v~d~~~--- 224 (251)
T COG4700 160 P---DGHLLFARTLAAQGKYADAESAFEVAISYY-----PG--PQARIY--YAEMLAKQGRLREANAQYVAVVDTAK--- 224 (251)
T ss_pred C---CchHHHHHHHHhcCCchhHHHHHHHHHHhC-----CC--HHHHHH--HHHHHHHhcchhHHHHHHHHHHHHHH---
Confidence 2 223447999999999999999999999875 11 133444 48888999999998887654443332
Q ss_pred CCCCHHHHHHHHHHH
Q 000191 1096 GPDDLRTQDAAAWLE 1110 (1888)
Q Consensus 1096 G~dh~~tl~a~~~La 1110 (1888)
...--.++....|+.
T Consensus 225 r~~~H~rkh~reW~~ 239 (251)
T COG4700 225 RSRPHYRKHHREWIK 239 (251)
T ss_pred hcchhHHHHHHHHHH
Confidence 222223355666664
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.019 Score=77.90 Aligned_cols=215 Identities=15% Similarity=0.018 Sum_probs=147.8
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000191 931 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010 (1888)
Q Consensus 931 hpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki 1010 (1888)
+|.-+..|..+-.-+..+++.++|...+++||.-..-.-+...-+...+|.||=..| |.-+.-.+.|+||.+++.
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~kVFeRAcqycd-- 1528 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLKKVFERACQYCD-- 1528 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHHHHHHHHHHhcc--
Confidence 566566666666667788999999999999987541000122334566777776655 455667788888888652
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1011 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1011 ~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
...+|..|.-+|...+++++|.++|+..++-+. +....|..+|..+..+.+-++|...+++|+..
T Consensus 1529 -------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1529 -------AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred -------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 346688899999999999999999998887653 34567777899999999999999999999977
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000191 1091 LRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVA 1170 (1888)
Q Consensus 1091 ~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKAL 1170 (1888)
+.+ .+|.....-...|. +..+..+..+++.++.... ++..-++|....+...+.|+.+.+...|++++
T Consensus 1594 lPk---~eHv~~IskfAqLE-Fk~GDaeRGRtlfEgll~a--------yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1594 LPK---QEHVEFISKFAQLE-FKYGDAERGRTLFEGLLSA--------YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVI 1661 (1710)
T ss_pred cch---hhhHHHHHHHHHHH-hhcCCchhhHHHHHHHHhh--------CccchhHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 543 34544443333332 2223333444444443321 22344567777777788888888999999988
Q ss_pred HHhcccc
Q 000191 1171 KVKGNFY 1177 (1888)
Q Consensus 1171 eL~dSi~ 1177 (1888)
.+.-++.
T Consensus 1662 ~l~l~~k 1668 (1710)
T KOG1070|consen 1662 ELKLSIK 1668 (1710)
T ss_pred hcCCChh
Confidence 8766554
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0082 Score=67.19 Aligned_cols=99 Identities=19% Similarity=0.068 Sum_probs=82.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 000191 981 GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT 1060 (1888)
Q Consensus 981 ~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~t 1060 (1888)
--=|.-++..|+|++|..-|..||+++.... .-....+|.|.|.++..++.++.|+.-+-+|+++. +.+
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~---~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--------pty 167 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPSTS---TEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--------PTY 167 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCcccc---HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--------chh
Confidence 3446778999999999999999999875431 13356778999999999999999999999999985 345
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1061 AASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1061 A~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
-.++...|.+|..+..|++|+.-|++.+++
T Consensus 168 ~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 168 EKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 567778899999999999999999887754
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.012 Score=66.00 Aligned_cols=106 Identities=21% Similarity=0.189 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000191 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 969 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~l 969 (1888)
...+..|-.-|..++..|+|.+|..-|.+||.++.... ......+|.+.|.++..++.++.|+.-+.|||.+
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~---~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel----- 163 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS---TEERSILYSNRAAALIKLRKWESAIEDCSKAIEL----- 163 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc---HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc-----
Confidence 34567788889999999999999999999999865432 2445678999999999999999999999999998
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 970 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
.|....++..-|.+|..+..|++|++-|++.+++
T Consensus 164 ---~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 164 ---NPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred ---CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 4666778888999999999999999999999885
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.11 Score=68.96 Aligned_cols=190 Identities=14% Similarity=0.039 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+...--.|.+.+.+|+++.|+.+.+.++...-.. ....-+.++..+|.+...+|++++|..+.+++.++.++.- .
T Consensus 458 ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~---~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~--~ 532 (894)
T COG2909 458 AEFQALRAQVALNRGDPEEAEDLARLALVQLPEA---AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD--V 532 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc---cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc--c
Confidence 3333334788899999999999999999874321 2233467899999999999999999999999999987731 1
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC---ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS---HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~d---hP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
......+.+.-+.++..+|+...|. ..++........... |.-...++..+.+.+.+ ++.+..-....+++.
T Consensus 533 ~~l~~~~~~~~s~il~~qGq~~~a~--~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~ 607 (894)
T COG2909 533 YHLALWSLLQQSEILEAQGQVARAE--QEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVG 607 (894)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhh
Confidence 2234466677899999999433333 333333322222222 22234444444555444 677776666666665
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000191 1050 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 1093 (1888)
Q Consensus 1050 ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk 1093 (1888)
... .+........++.||.++...|++++|...+.+....+..
T Consensus 608 ~~~-~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 608 SVY-TPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred hhc-ccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 333 2222223333468999999999999999999988877654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.048 Score=64.14 Aligned_cols=173 Identities=14% Similarity=0.051 Sum_probs=114.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHH----------HHHHH
Q 000191 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQK----------ALDIN 965 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eK----------AL~I~ 965 (1888)
|-.+|..|+...+|..|-.+|++.-.+ +|.........|..++..+.+..|+..... ++++.
T Consensus 47 LSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLq 118 (459)
T KOG4340|consen 47 LSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQ 118 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 444577788888888888888875443 566666666667777777777666643322 22211
Q ss_pred HHhc--CC------------CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 000191 966 EREL--GL------------DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 1031 (1888)
Q Consensus 966 Er~l--G~------------Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~ 1031 (1888)
-.+. .. -....+...+|.|.+.+..|+|+.|++-|+.|++. +.-.|..+ +|+|.+..+
T Consensus 119 aAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqv-----sGyqpllA---YniALaHy~ 190 (459)
T KOG4340|consen 119 AAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQV-----SGYQPLLA---YNLALAHYS 190 (459)
T ss_pred HHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhh-----cCCCchhH---HHHHHHHHh
Confidence 1000 00 11245667889999999999999999999999985 44455543 679999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhc----------CCCc-----------HHHHHHHHHHHHHHHHcCChHHHHHHH
Q 000191 1032 LGNVHVALRYLHKALKCNQRLL----------GPDH-----------IQTAASYHAIAIALSLMEAYPLSVQHE 1084 (1888)
Q Consensus 1032 lG~yeeAle~LekALei~ek~~----------G~d~-----------~~tA~al~nLA~ay~~lGdydeAle~l 1084 (1888)
.|+|+.|+++.-+.++.-.+.. |.+- .....+++.-+.++++.|+++.|.+.+
T Consensus 191 ~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL 264 (459)
T KOG4340|consen 191 SRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL 264 (459)
T ss_pred hhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence 9999999999988876543321 1110 012344555677888889998886654
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0062 Score=72.23 Aligned_cols=98 Identities=20% Similarity=0.146 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..+-+.|..|+.+|+|++|+.+|.+++++ .|..+..+.+.|.+|+.+..|..|..-+..|+.+-.
T Consensus 97 ~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~------ 162 (536)
T KOG4648|consen 97 ASEIKERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK------ 162 (536)
T ss_pred hHHHHHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH------
Confidence 445778899999999999999999999887 344456788999999999999999999999999843
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
....+|..-|..-..+|...+|.+-++.+|++
T Consensus 163 --~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 163 --LYVKAYSRRMQARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred --HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence 35789999999999999999999999999986
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.065 Score=55.86 Aligned_cols=120 Identities=23% Similarity=0.173 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC---CCh-hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP---YHR-MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 968 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~---dhp-e~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~ 968 (1888)
+...+..|...+..|-|++|..-+++|++....+... ||. ..+-|+..|+.++..+|+|++++.-..+||..+.|.
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence 4445556677788999999999999999987765322 222 347899999999999999999999999999998775
Q ss_pred cCCCChhh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 969 LGLDHPDT----MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 1013 (1888)
Q Consensus 969 lG~Dhp~t----a~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~ 1013 (1888)
|.-|.+. +.+-++-|..+..+|+.++|+..|+.+-++.....|.
T Consensus 89 -GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE 136 (144)
T PF12968_consen 89 -GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGE 136 (144)
T ss_dssp ---TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S-
T ss_pred -cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Confidence 5555443 4556788999999999999999999999987765443
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.023 Score=64.49 Aligned_cols=170 Identities=14% Similarity=0.096 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.|..+++.|..|-..|-..-|..-|.++|.+ .|.++.+++.||..+...|+|+.|.+.|.-.+++
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL------- 128 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL------- 128 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc-------
Confidence 4778899999999999999999999999987 6788899999999999999999999999888876
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH-------------HHHHHHHHHHHHC------
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTA-------------ATYINVAMMEEGL------ 1032 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a-------------~a~~NLA~iy~~l------ 1032 (1888)
+|..-.+..|-|..++.-|+|..|.+-+.+-..- .+++|-.. .+..||..-+...
T Consensus 129 -Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-----D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG 202 (297)
T COG4785 129 -DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-----DPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWG 202 (297)
T ss_pred -CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-----CCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhh
Confidence 4555667788888889999999998765443221 12222111 1112222222211
Q ss_pred --------CCHHHHHHHHHHHHHHHHHhcCCCcHH----HHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000191 1033 --------GNVHVALRYLHKALKCNQRLLGPDHIQ----TAASYHAIAIALSLMEAYPLSVQHEQTTL 1088 (1888)
Q Consensus 1033 --------G~yeeAle~LekALei~ek~~G~d~~~----tA~al~nLA~ay~~lGdydeAle~lqkAL 1088 (1888)
|+..+ ...++++.+. ..+... ...+|+.||..|...|+.++|...|+-|+
T Consensus 203 ~~iV~~yLgkiS~-e~l~~~~~a~-----a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLai 264 (297)
T COG4785 203 WNIVEFYLGKISE-ETLMERLKAD-----ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAV 264 (297)
T ss_pred HHHHHHHHhhccH-HHHHHHHHhh-----ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 11110 1112222221 122222 34678899999999999999999998665
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.02 Score=61.77 Aligned_cols=105 Identities=18% Similarity=0.131 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 1014 (1888)
Q Consensus 935 A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~d 1014 (1888)
+..++.-|...+..|+|.+|+..++....- -+-.+..-.+...|+.+|+..++|++|+..+++-+.+ .+.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~r-----yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~ 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTR-----YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPT 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Confidence 467888899999999999999988765442 2334556688999999999999999999999999886 588
Q ss_pred ChhHHHHHHHHHHHHHHCCC---------------HHHHHHHHHHHHHHH
Q 000191 1015 HPNTAATYINVAMMEEGLGN---------------VHVALRYLHKALKCN 1049 (1888)
Q Consensus 1015 hP~~a~a~~NLA~iy~~lG~---------------yeeAle~LekALei~ 1049 (1888)
||.+-.+++..|+++..+.. ..+|...|++.+..+
T Consensus 80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 99999999999999988765 666777666666554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.059 Score=69.38 Aligned_cols=177 Identities=14% Similarity=-0.017 Sum_probs=116.1
Q ss_pred HHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 000191 904 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH----TGDFNQATIYQQKALDINERELGLDHPDTMKS 979 (1888)
Q Consensus 904 l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~----lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~a 979 (1888)
--.|+-+.++.++.++.+ ...+.++.-......|+..-..+.. ..+.+.|...+...... .|+-...
T Consensus 199 GF~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--------yP~s~lf 269 (468)
T PF10300_consen 199 GFSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--------YPNSALF 269 (468)
T ss_pred CcCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--------CCCcHHH
Confidence 356888999998888765 2222111111111222222222222 22334444444444332 5777788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHH
Q 000191 980 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ 1059 (1888)
Q Consensus 980 y~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~ 1059 (1888)
+..-|.++...|+.++|+++|++|+...... . .-....+..+|+++..+.+|++|..++.+.++.. ...
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~-~---Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-------~WS 338 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEW-K---QLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-------KWS 338 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhH-H---hHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-------ccH
Confidence 8899999999999999999999988532221 1 1124568899999999999999999998887643 234
Q ss_pred HHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHHHHHHhcCCCCH
Q 000191 1060 TAASYHAIAIALSLMEAY-------PLSVQHEQTTLQILRAKLGPDDL 1100 (1888)
Q Consensus 1060 tA~al~nLA~ay~~lGdy-------deAle~lqkALeI~kk~LG~dh~ 1100 (1888)
.+...+..|.+|...|+. ++|..+++++-....+..|..-+
T Consensus 339 ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp 386 (468)
T PF10300_consen 339 KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLP 386 (468)
T ss_pred HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCC
Confidence 566677789999999999 77777887777777766664444
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.018 Score=68.53 Aligned_cols=117 Identities=18% Similarity=0.131 Sum_probs=92.1
Q ss_pred hhcccHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCC---HHHHHHHHHHH
Q 000191 885 QAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD---FNQATIYQQKA 961 (1888)
Q Consensus 885 ~~~~~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGd---yeeAl~~~eKA 961 (1888)
+......+++.++-+|.+|+.+|++..|...|.+|+++ .++....+..+|.+++.+.+ -.+|..++++|
T Consensus 148 ~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~a 219 (287)
T COG4235 148 HLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQA 219 (287)
T ss_pred HHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 34445566888899999999999999999999999988 34445577788888877653 46778888888
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 000191 962 LDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAAT 1021 (1888)
Q Consensus 962 L~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a 1021 (1888)
+.. ++....+.+.||..++..|+|.+|...++..+... ..+.|....+
T Consensus 220 l~~--------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l----p~~~~rr~~i 267 (287)
T COG4235 220 LAL--------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL----PADDPRRSLI 267 (287)
T ss_pred Hhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC----CCCCchHHHH
Confidence 875 45667889999999999999999999999988753 4455554433
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.046 Score=67.79 Aligned_cols=114 Identities=16% Similarity=0.143 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhH--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HHHHhcC
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMT--AGAYSLLAVVLYHTGDFNQATIYQQKALD-INERELG 970 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~--A~ay~~LA~ly~~lGdyeeAl~~~eKAL~-I~Er~lG 970 (1888)
..++-.++.++..|++.+|.+++... .+....-|...|+. ...+++||.+++++|.|..+..+|.+|+. .+.++..
T Consensus 241 ~~l~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~ 319 (696)
T KOG2471|consen 241 MALLLKSQLEYAHGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN 319 (696)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhc-ccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc
Confidence 34555677888899999988877543 22222222233443 34567999999999999999999999996 4444322
Q ss_pred CC---------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000191 971 LD---------HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH 1008 (1888)
Q Consensus 971 ~D---------hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ 1008 (1888)
.- ......+++|+|..|...|+.-.|.++|.+|...+.
T Consensus 320 g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh 366 (696)
T KOG2471|consen 320 GLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH 366 (696)
T ss_pred cCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 11 112356789999999999999999999999998764
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.54 Score=62.68 Aligned_cols=274 Identities=14% Similarity=0.069 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC---CC-----------h----hHHHHHHHHHHHHHhcCCHHHH
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP---YH-----------R----MTAGAYSLLAVVLYHTGDFNQA 954 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~---dh-----------p----e~A~ay~~LA~ly~~lGdyeeA 954 (1888)
+-.++-.|..++..|..+.|.+++.+++...+...+. .. . ....++..++.+...++++..|
T Consensus 301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a 380 (608)
T PF10345_consen 301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA 380 (608)
T ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence 3445555777888888889999999999988776510 00 0 1233456677888889999999
Q ss_pred HHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC---CCChhHHHHHHHHHHHHH
Q 000191 955 TIYQQKALDINERELG-LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG---PSHPNTAATYINVAMMEE 1030 (1888)
Q Consensus 955 l~~~eKAL~I~Er~lG-~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G---~dhP~~a~a~~NLA~iy~ 1030 (1888)
......+.....+... .........++-.|.+++..|+.+.|+.+|.+.+-......+ ......+.+..|+..++.
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~ 460 (608)
T PF10345_consen 381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQ 460 (608)
T ss_pred HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhH
Confidence 9999988887665321 112334677888999999999999999999966544322222 223334566778888888
Q ss_pred HCCCHHHHHHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 000191 1031 GLGNVHVALRYLHKALKCNQRLLGP-DHIQTAASYHAIAIALSL--MEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAA 1107 (1888)
Q Consensus 1031 ~lG~yeeAle~LekALei~ek~~G~-d~~~tA~al~nLA~ay~~--lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~ 1107 (1888)
..+.-.....-+.+.++..+..... ........+..+-.++.. .-.+.++..+++++++.+-+..+... .+..++.
T Consensus 461 ~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~-l~~~~L~ 539 (608)
T PF10345_consen 461 YESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQ-LLAILLN 539 (608)
T ss_pred hhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccch-HHHHHHH
Confidence 7766444322233334332222111 112222223222233322 23345899999999999822333322 2222333
Q ss_pred HHHHHH--HHHHHHHHHHHhcCCCCchhhhhcCCccHHH-----HHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1108 WLEYFE--SKAFEQQEAARNGTRKPDASIASKGHLSVSD-----LLDYINPSHDTKGRNVSTLKRKTYVAKV 1172 (1888)
Q Consensus 1108 ~La~L~--qka~e~AeAl~~~~~~~~~~~as~~~~svae-----lL~~Lg~~y~~qGdyeEAleyyeKALeL 1172 (1888)
.+.... ....++++..... ...+.+....... .-..+...|...|+.++|.....+.-.+
T Consensus 540 lm~~~lf~~~~~e~~~~s~~a-----~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~~ 606 (608)
T PF10345_consen 540 LMGHRLFEGDVGEQAKKSARA-----FQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDRV 606 (608)
T ss_pred HHHHHHHcCCHHHHHHHHHHH-----HHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 333221 1222222211110 0011111001111 2235666788999999999888776554
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.13 Score=64.79 Aligned_cols=128 Identities=20% Similarity=0.127 Sum_probs=100.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh------
Q 000191 901 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP------ 974 (1888)
Q Consensus 901 ~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp------ 974 (1888)
...++..+...-+++.++||++ .++.+.+|..||.-. ..-..+|..++++|++..+..+|.+..
T Consensus 176 q~AWRERnp~aRIkaA~eALei--------~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~ 245 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEI--------NPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGH 245 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh--------hhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccc
Confidence 4556778899999999999998 567778888777532 234689999999999999988776421
Q ss_pred --------h---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 000191 975 --------D---TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLH 1043 (1888)
Q Consensus 975 --------~---ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~Le 1043 (1888)
+ ...+-..||.|..++|+.++|++.++..+... ..-+...+..||-.+|..++.|.++...+.
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~------p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF------PNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC------CccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 0 13445689999999999999999999887642 112456789999999999999999988776
Q ss_pred H
Q 000191 1044 K 1044 (1888)
Q Consensus 1044 k 1044 (1888)
+
T Consensus 320 k 320 (539)
T PF04184_consen 320 K 320 (539)
T ss_pred H
Confidence 5
|
The molecular function of this protein is uncertain. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.023 Score=65.80 Aligned_cols=99 Identities=17% Similarity=0.152 Sum_probs=81.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC-----CcHHHHHHH
Q 000191 990 LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP-----DHIQTAASY 1064 (1888)
Q Consensus 990 lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~-----d~~~tA~al 1064 (1888)
...+++|++.|.-|+..... .+..+...+.++..+||+|..+|+.+....++++|++.+++.+.. .....+.++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~-~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQI-KKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 45678888888888876544 456667889999999999999999999999999999988877532 233557788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 000191 1065 HAIAIALSLMEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1065 ~nLA~ay~~lGdydeAle~lqkALe 1089 (1888)
+.+|.++.+.|++++|..++.+.+.
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 8999999999999999999988774
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.01 Score=55.89 Aligned_cols=58 Identities=28% Similarity=0.385 Sum_probs=53.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 941 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 941 LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
|..+|...+++++|+.++++++.+ +|.....+..+|.+|..+|++.+|+..|+++++.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 467899999999999999999997 5667888999999999999999999999999975
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.2 Score=58.89 Aligned_cols=141 Identities=22% Similarity=0.223 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 1014 (1888)
Q Consensus 935 A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~d 1014 (1888)
+..+++-|....+.|++++|+.+|++...- -+-.+..-.+...|+..++..+++++|+.+..+-+.+ -+.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-----~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l-----yP~ 103 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSR-----HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL-----YPT 103 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-----CCC
Confidence 456778888888999999999999876532 2334556788999999999999999999999998876 378
Q ss_pred ChhHHHHHHHHHHHHHHC-----CCHH---HHHHHHHHHHHHHHHhcCCCcHH--------------HHHHHHHHHHHHH
Q 000191 1015 HPNTAATYINVAMMEEGL-----GNVH---VALRYLHKALKCNQRLLGPDHIQ--------------TAASYHAIAIALS 1072 (1888)
Q Consensus 1015 hP~~a~a~~NLA~iy~~l-----G~ye---eAle~LekALei~ek~~G~d~~~--------------tA~al~nLA~ay~ 1072 (1888)
||+...+++..|.++... .+.. +|+.-|++.+. +. +++.. .+.--..+|..|.
T Consensus 104 ~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~---ry--PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~ 178 (254)
T COG4105 104 HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQ---RY--PNSRYAPDAKARIVKLNDALAGHEMAIARYYL 178 (254)
T ss_pred CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHH---HC--CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987743 2223 34444443333 22 44332 2233345677888
Q ss_pred HcCChHHHHHHHHHHHHH
Q 000191 1073 LMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1073 ~lGdydeAle~lqkALeI 1090 (1888)
+.|.+-.|+..+++.++-
T Consensus 179 kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 179 KRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HhcChHHHHHHHHHHHhc
Confidence 888888888887776644
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0086 Score=56.34 Aligned_cols=59 Identities=31% Similarity=0.380 Sum_probs=53.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 983 LAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 983 LA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
|+.+|...++|++|++++++++.+ +|.....+...|.+|..+|++++|+..|+++++..
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467899999999999999999986 46677788999999999999999999999999774
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.01 Score=68.09 Aligned_cols=106 Identities=20% Similarity=0.233 Sum_probs=96.2
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000191 889 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 968 (1888)
Q Consensus 889 ~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~ 968 (1888)
.+..+..+-+.|..++...+|..|+..|.+|+.+ +|..+..|.+-|.+|+++.+++.+..-.++|+++
T Consensus 6 ~s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql---- 73 (284)
T KOG4642|consen 6 MSESAEQLKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL---- 73 (284)
T ss_pred cchHHHHHHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc----
Confidence 3456778888999999999999999999999987 7888889999999999999999999999999997
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000191 969 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010 (1888)
Q Consensus 969 lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki 1010 (1888)
.++.+..++.||.+......|++|+..+++|..+.+..
T Consensus 74 ----~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 74 ----DPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred ----ChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 57889999999999999999999999999999987663
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.024 Score=65.60 Aligned_cols=101 Identities=20% Similarity=0.135 Sum_probs=83.1
Q ss_pred HcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC-----ChhhHHH
Q 000191 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD-----HPDTMKS 979 (1888)
Q Consensus 905 ~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D-----hp~ta~a 979 (1888)
....+++|++.|.-||-.++ +.+..+...|.++..+|++|..+|+.++...++++|+..+++.+-.. ..+....
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~-~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQ-IKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 34568899999988887644 44667778899999999999999999999999999999988776332 2234577
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 980 YGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 980 y~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
++.+|.++.+.|++++|+++|.+++..
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 888999999999999999999998863
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.19 Score=60.46 Aligned_cols=261 Identities=12% Similarity=0.008 Sum_probs=163.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAV-VLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~-ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...+++|..+...|+..+-..+....-..+..+. .+..+...+.|-. +...-+....-+.++.++++++.+..
T Consensus 49 ~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~---KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ek--- 122 (411)
T KOG1463|consen 49 QSILELGDLLAKEGDAEELRDLITSLRPFLSSVS---KAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREK--- 122 (411)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHh---
Confidence 4567888999999998887666666555554431 2333444444433 33344556677788888888876521
Q ss_pred Chhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 973 HPDT-MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 973 hp~t-a~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
.... ...-..|..+|+..++|.+|+.+....+.-+++. .+.+....++..=...|..+.+..+|...+..|-.....
T Consensus 123 RtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl--DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~Ana 200 (411)
T KOG1463|consen 123 RTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL--DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANA 200 (411)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc--ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcc
Confidence 1111 1334578899999999999999999888877765 334455556666677888888889998888877666544
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCC
Q 000191 1052 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE--YFESKAFEQQEAARNGTRK 1129 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La--~L~qka~e~AeAl~~~~~~ 1129 (1888)
.+-+.. ..+..=..-|.+++...||.-|..||-+|++-|.. +.++.....++.++. .+..+..+.-.++..+...
T Consensus 201 iYcpPq-lQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s--~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~ 277 (411)
T KOG1463|consen 201 IYCPPQ-LQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDS--LDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLA 277 (411)
T ss_pred cccCHH-HHHHHHHhccceeecccccchHHHHHHHHHccccc--cCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHH
Confidence 443321 12333334467777789999999999999988754 344556666665543 2233333333222221111
Q ss_pred CchhhhhcCCccHHHHHHHHHHHH--HHcCChHHHHHHHHHHHH
Q 000191 1130 PDASIASKGHLSVSDLLDYINPSH--DTKGRNVSTLKRKTYVAK 1171 (1888)
Q Consensus 1130 ~~~~~as~~~~svaelL~~Lg~~y--~~qGdyeEAleyyeKALe 1171 (1888)
.. ......+++..++.++ +...+|+.|+.-|+.-+.
T Consensus 278 l~------y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~ 315 (411)
T KOG1463|consen 278 LK------YAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELA 315 (411)
T ss_pred Hh------ccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHh
Confidence 10 1112345677788877 445778888888877654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0093 Score=55.28 Aligned_cols=54 Identities=24% Similarity=0.346 Sum_probs=46.9
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000191 903 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964 (1888)
Q Consensus 903 ~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I 964 (1888)
++..|++++|+.+|++++.. +|....++..||.+|..+|++++|..++++++..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ChhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35789999999999999987 5666778999999999999999999999988775
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.014 Score=54.14 Aligned_cols=54 Identities=28% Similarity=0.339 Sum_probs=47.1
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 945 LYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 945 y~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
+...|++++|+.+|++++.. +|....++..||.+|...|++++|..++.+++..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ChhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35789999999999999987 5677888899999999999999999999998864
|
... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.018 Score=68.56 Aligned_cols=95 Identities=17% Similarity=0.125 Sum_probs=83.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 000191 939 SLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT 1018 (1888)
Q Consensus 939 ~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~ 1018 (1888)
-.-|.-|+.+|.|++|+.+|.+++.+ +|.....|.|-|..|+.+.+|..|..-+..|+.+-. ..
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~--------~Y 164 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK--------LY 164 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH--------HH
Confidence 45688999999999999999999987 455667789999999999999999999999998743 35
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 1019 AATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1019 a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
..+|...|.+...+|...+|.+-++.+|++-
T Consensus 165 ~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 165 VKAYSRRMQARESLGNNMEAKKDCETVLALE 195 (536)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHHHHhhC
Confidence 6788899999999999999999999999874
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.14 Score=65.93 Aligned_cols=133 Identities=19% Similarity=0.013 Sum_probs=98.7
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 000191 907 GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVF 986 (1888)
Q Consensus 907 Gd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~l 986 (1888)
...+.|.+++...+.. .|.-+-.+...|+++...|+.++|+..+++|+....... .-...++..+|++
T Consensus 247 ~~~~~a~~lL~~~~~~--------yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~----Ql~~l~~~El~w~ 314 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--------YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWK----QLHHLCYFELAWC 314 (468)
T ss_pred CCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHH----hHHHHHHHHHHHH
Confidence 4455566666655544 455566788899999999999999999999985432211 1234678999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHhcCCCcH
Q 000191 987 YYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNV-------HVALRYLHKALKCNQRLLGPDHI 1058 (1888)
Q Consensus 987 y~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~y-------eeAle~LekALei~ek~~G~d~~ 1058 (1888)
+..+.+|++|..++.+.++.. .-..+...+..|.+|...++. ++|..+|.++-....+..|...|
T Consensus 315 ~~~~~~w~~A~~~f~~L~~~s-------~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp 386 (468)
T PF10300_consen 315 HMFQHDWEEAAEYFLRLLKES-------KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLP 386 (468)
T ss_pred HHHHchHHHHHHHHHHHHhcc-------ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCC
Confidence 999999999999999887631 223455566789999999999 78888888887777766664444
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.1 Score=58.21 Aligned_cols=133 Identities=15% Similarity=0.053 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000191 895 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 974 (1888)
Q Consensus 895 ~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp 974 (1888)
.-+.+|..+...|++.+|..+|++++.- ... ..+..+..+|+..+..+++.+|...+++..+.-- ..
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG------~fA-~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p------a~ 157 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSG------IFA-HDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP------AF 157 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhcc------ccC-CCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC------cc
Confidence 3455677888999999999999999863 222 2245778899999999999999998887766421 11
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
.+......+|..|..+|++.+|...|+.++..+ |. .......+.++..+|+.++|..-+....+..
T Consensus 158 r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y--------pg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~ 223 (251)
T COG4700 158 RSPDGHLLFARTLAAQGKYADAESAFEVAISYY--------PG-PQARIYYAEMLAKQGRLREANAQYVAVVDTA 223 (251)
T ss_pred CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC--------CC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 233445668999999999999999999999863 11 2333447899999999999988776665544
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.1 Score=60.74 Aligned_cols=158 Identities=18% Similarity=0.197 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
....+-.+..++-.|.|.-....+.+.++. +.+.-......||++.++.||.+.|..++++.-....++.+.
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~- 248 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGL- 248 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhcc-
Confidence 445555667778888888888888877763 334445677889999999999999999999776655544332
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
........|.+.+|...++|..|...|.+.+.. ++..+.+.+|-|.|+.-+|+..+|++.++.++.+.
T Consensus 249 -q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--- 316 (366)
T KOG2796|consen 249 -QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--- 316 (366)
T ss_pred -chhHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC---
Confidence 234566788999999999999999888887753 45566778899999999999999999999988764
Q ss_pred cCCCcHHHHHHHHHHHHHHH
Q 000191 1053 LGPDHIQTAASYHAIAIALS 1072 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~ 1072 (1888)
+.+...-...++|..+|.
T Consensus 317 --P~~~l~es~~~nL~tmyE 334 (366)
T KOG2796|consen 317 --PRHYLHESVLFNLTTMYE 334 (366)
T ss_pred --CccchhhhHHHHHHHHHH
Confidence 333333344555555543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.16 Score=60.87 Aligned_cols=167 Identities=14% Similarity=-0.020 Sum_probs=124.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000191 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 975 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ 975 (1888)
+...+...+..|++.+|...+.+.|.- +|....++..--.+++.+|+.......++|.+..- ..|-|-
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d--------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~ 173 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDD--------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPC 173 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHh--------CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcH
Confidence 333455667789999988888887764 55555566666678888999988888887776532 345555
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 976 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 1055 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~ 1055 (1888)
.......+|..+...|-|++|.+...+|+++. +.-..+...++-++...|++.++.+++.+.-...+..
T Consensus 174 ~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN--------~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s--- 242 (491)
T KOG2610|consen 174 YSYVHGMYAFGLEECGIYDDAEKQADRALQIN--------RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS--- 242 (491)
T ss_pred HHHHHHHHHhhHHHhccchhHHHHHHhhccCC--------CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh---
Confidence 56667778999999999999999999999873 3334556668999999999999999998877665421
Q ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000191 1056 DHIQTAASYHAIAIALSLMEAYPLSVQHEQT 1086 (1888)
Q Consensus 1056 d~~~tA~al~nLA~ay~~lGdydeAle~lqk 1086 (1888)
....+..|-..|..|...+.|+.|++.|..
T Consensus 243 -~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 243 -WMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred -hHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 222334455678888888999999999874
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.64 Score=57.94 Aligned_cols=150 Identities=13% Similarity=0.030 Sum_probs=91.0
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 000191 908 KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFY 987 (1888)
Q Consensus 908 d~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly 987 (1888)
.+..|...+.++|...++.++...-.......+|=..|....+|+.-+.+.+..-.+ ...+-+........+|.++
T Consensus 114 ~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~----p~~~~~~~~~i~~~yafAL 189 (374)
T PF13281_consen 114 RYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEAL----PTCDVANQHNIKFQYAFAL 189 (374)
T ss_pred HHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc----CccchhcchHHHHHHHHHH
Confidence 444456667777777666654322333455667777789899998888777654332 1122334455667788888
Q ss_pred HH---cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHhcCC
Q 000191 988 YR---LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL---------GNVHVALRYLHKALKCNQRLLGP 1055 (1888)
Q Consensus 988 ~~---lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~l---------G~yeeAle~LekALei~ek~~G~ 1055 (1888)
.+ .|+.++|+..+..++.- .......++.-+|.+|..+ ..+++|+.+|.++.++..
T Consensus 190 nRrn~~gdre~Al~il~~~l~~-------~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~----- 257 (374)
T PF13281_consen 190 NRRNKPGDREKALQILLPVLES-------DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP----- 257 (374)
T ss_pred hhcccCCCHHHHHHHHHHHHhc-------cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc-----
Confidence 88 89999999998887542 1223345566678887643 225566666666655531
Q ss_pred CcHHHHHHHHHHHHHHHHcCCh
Q 000191 1056 DHIQTAASYHAIAIALSLMEAY 1077 (1888)
Q Consensus 1056 d~~~tA~al~nLA~ay~~lGdy 1077 (1888)
....-.|+|.++...|.-
T Consensus 258 ----~~Y~GIN~AtLL~~~g~~ 275 (374)
T PF13281_consen 258 ----DYYSGINAATLLMLAGHD 275 (374)
T ss_pred ----cccchHHHHHHHHHcCCc
Confidence 122334556666666653
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.5 Score=55.68 Aligned_cols=172 Identities=16% Similarity=0.151 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000191 895 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 974 (1888)
Q Consensus 895 ~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp 974 (1888)
.+...|.+|+..|++++|+........+ .+...--.++.++.+++-|....++...+.+.
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~~~~l-------------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided------- 169 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHLGENL-------------EAAALNVQILLKMHRFDLAEKELKKMQQIDED------- 169 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhccchH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHccchH-------
Confidence 3444578889999999999887763332 23333345667777888888888887776432
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 000191 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G 1054 (1888)
.++..||..+...- .+-.-++.|..+++...+... .+..+++.+|.+...+|+|++|...++.||.-.
T Consensus 170 ---~tLtQLA~awv~la---~ggek~qdAfyifeE~s~k~~-~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd----- 237 (299)
T KOG3081|consen 170 ---ATLTQLAQAWVKLA---TGGEKIQDAFYIFEELSEKTP-PTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD----- 237 (299)
T ss_pred ---HHHHHHHHHHHHHh---ccchhhhhHHHHHHHHhcccC-CChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-----
Confidence 23344544443320 011114455555555544333 345678889999999999999999999999753
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 000191 1055 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDA 1105 (1888)
Q Consensus 1055 ~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a 1105 (1888)
.....++.|+-.+-...|.-.++...+-.-+. ...+.|+-+...
T Consensus 238 ---~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk----~~~p~h~~vk~~ 281 (299)
T KOG3081|consen 238 ---AKDPETLANLIVLALHLGKDAEVTERNLSQLK----LSHPEHPFVKHL 281 (299)
T ss_pred ---CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH----hcCCcchHHHHH
Confidence 22355666777777778887777665543332 235666655433
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.14 Score=64.47 Aligned_cols=131 Identities=18% Similarity=0.133 Sum_probs=100.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh---
Q 000191 940 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP--- 1016 (1888)
Q Consensus 940 ~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP--- 1016 (1888)
.+-.-.++..++..-+++.++||++. ++.+.+|.-||. .......+|+++|++|++..+..+|.+..
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~--------pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~ 242 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEIN--------PDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQH 242 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhh--------hhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhc
Confidence 34445567788899999999999984 667788887764 23345689999999999988877665310
Q ss_pred --------------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHH
Q 000191 1017 --------------NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQ 1082 (1888)
Q Consensus 1017 --------------~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle 1082 (1888)
-...+...+|++..++|+.++|++.++..++... ......++.+|..+|..++.|.++..
T Consensus 243 ~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p------~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 243 HGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP------NLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred ccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC------ccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 0134567899999999999999999998887541 12356688999999999999999987
Q ss_pred HHHH
Q 000191 1083 HEQT 1086 (1888)
Q Consensus 1083 ~lqk 1086 (1888)
.+.+
T Consensus 317 lL~k 320 (539)
T PF04184_consen 317 LLAK 320 (539)
T ss_pred HHHH
Confidence 7654
|
The molecular function of this protein is uncertain. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.21 Score=53.69 Aligned_cols=113 Identities=24% Similarity=0.226 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC--------------ChhHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPY--------------HRMTAGAYSLLAVVLYHTGDFNQATIYQQ 959 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~d--------------hpe~A~ay~~LA~ly~~lGdyeeAl~~~e 959 (1888)
..+...|......|+...++..+++++.++.--+-.+ +.....++..++..+...|++++|+.+++
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 3444556667788899999999999998764322111 12234567788889999999999999999
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 960 KALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 1014 (1888)
Q Consensus 960 KAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~d 1014 (1888)
+++.+ +|..-.+|..|-.+|..+|++.+|+.+|++....+..-+|..
T Consensus 87 ~~l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~ 133 (146)
T PF03704_consen 87 RALAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE 133 (146)
T ss_dssp HHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence 99987 577778889999999999999999999999999888766654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.19 Score=56.55 Aligned_cols=126 Identities=18% Similarity=0.111 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH
Q 000191 957 YQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH 1036 (1888)
Q Consensus 957 ~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~ye 1036 (1888)
-++.-+.-++..++ ......++..+|.+|...|+++.|++.|.++++.+. ..-..+..+.++-.+....++|.
T Consensus 18 ~Le~elk~~~~n~~--kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-----~~~~~id~~l~~irv~i~~~d~~ 90 (177)
T PF10602_consen 18 KLEAELKDAKSNLG--KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT-----SPGHKIDMCLNVIRVAIFFGDWS 90 (177)
T ss_pred HHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-----CHHHHHHHHHHHHHHHHHhCCHH
Confidence 34444444444333 345678899999999999999999999999887532 22346777888888999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000191 1037 VALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1037 eAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
....++.+|-.+.... .+..........-|..+...++|..|.+.|-.+...+
T Consensus 91 ~v~~~i~ka~~~~~~~--~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 91 HVEKYIEKAESLIEKG--GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 9999999999887652 2222223333345666777899999998887766443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG3965 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.019 Score=61.25 Aligned_cols=55 Identities=18% Similarity=0.308 Sum_probs=48.3
Q ss_pred CCceEEEEEEEeCCceEEEEEeccceeecCCC--------------ccccchHHHHHhhhcHHHHHHHH
Q 000191 216 DDHLLSLDVKLCNGKMVNVEACRKGFYSVGKQ--------------RILCHNIVDLLGQLSRAFDNAYN 270 (1888)
Q Consensus 216 ~Gdl~YL~v~t~Eg~~~~ITa~~~GFyvn~~~--------------~~~~HsLv~LL~~iSp~F~~~f~ 270 (1888)
..||+||.|+|.|+-.|+|-=+.+||=|.+++ ...+-|+..||-.|||.|+..|-
T Consensus 60 ~~dliyiNV~T~E~~~yCleLT~kG~rIvS~~~d~~ngd~~~~~l~t~yyes~y~LLd~ISP~y~E~Fg 128 (160)
T KOG3965|consen 60 TSDLIYINVRTLEQVPYCLELTRKGWRIVSSRYDCMNGDFTEDDLHTKYYESAYQLLDDISPLYRERFG 128 (160)
T ss_pred CCCeEEEEeEeecCCceeeeecccceeeeccccchhcccchhhhhhhHHHhhHHHHHhhcChHHHHHHH
Confidence 57899999999999999999999999996531 23577999999999999999986
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.17 Score=59.07 Aligned_cols=218 Identities=11% Similarity=0.018 Sum_probs=134.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 000191 949 GDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMM 1028 (1888)
Q Consensus 949 GdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~i 1028 (1888)
.++++|+.-|++.+++- |..-..-..++-.+-.+++++++|++-+.+|.+.+...+...-.++.... .+++-..
T Consensus 41 ~~p~~Al~sF~kVlelE----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKs--IN~IlDy 114 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELE----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKS--INSILDY 114 (440)
T ss_pred cCHHHHHHHHHHHHhcc----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHH--HHHHHHH
Confidence 47889999999999873 33334445788888999999999999999999999887765555544321 2222222
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 000191 1029 EEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAW 1108 (1888)
Q Consensus 1029 y~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~ 1108 (1888)
-....+.+.-..+|+..|+..+.. .+...+..+-..||.+|...|+|.+-...+++..+-++..-|+++..-..-+..
T Consensus 115 iStS~~m~LLQ~FYeTTL~ALkdA--KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLE 192 (440)
T KOG1464|consen 115 ISTSKNMDLLQEFYETTLDALKDA--KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLE 192 (440)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHhh--hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhh
Confidence 224455566667777777766554 222234445567899999999999998888888888888888877542211111
Q ss_pred ------HHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHH-HHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1109 ------LEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSD-LLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1109 ------La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svae-lL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
--|..++....-++++..+..... ...|+.+.. +..-=|....+.|++++|-.-|-.|-+-.+..+
T Consensus 193 iYAlEIQmYT~qKnNKkLK~lYeqalhiKS---AIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG 265 (440)
T KOG1464|consen 193 IYALEIQMYTEQKNNKKLKALYEQALHIKS---AIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG 265 (440)
T ss_pred hHhhHhhhhhhhcccHHHHHHHHHHHHhhc---cCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccC
Confidence 113333333334444443332221 112333322 222234445667788877776666666666655
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.68 Score=54.32 Aligned_cols=139 Identities=13% Similarity=0.114 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 936 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 1015 (1888)
Q Consensus 936 ~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dh 1015 (1888)
.+.+.++.++.-+|+|.-.+.++.+.+.. +.+.-......||.+-++.|+.+.|..|+++.-....++.+.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~-- 248 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGL-- 248 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhcc--
Confidence 46777888899999999999999988773 233344455678889999999999999999877665554332
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000191 1016 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1016 P~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
.....+..|.+.+|...++|..|...|.+.+.. ++..+.+.++-|.++...|+...|++.++.++++.
T Consensus 249 q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 249 QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred chhHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 223456778899999999999999999887754 23456677888999999999999999998887653
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.69 E-value=3.8 Score=51.62 Aligned_cols=246 Identities=15% Similarity=0.098 Sum_probs=129.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000191 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 975 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ 975 (1888)
....|+.-..++++..|...|++||.. ++.. ...+...+.+-+.......|..++.+|+.+.-+
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdv-------d~r~-itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-------- 139 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDV-------DYRN-ITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-------- 139 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhc-------cccc-chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch--------
Confidence 333345555566666666666666653 3332 245566667777777777777777777766433
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHH--------------------------HHHHHHhcCCCChhHHHHHHHHHHHH
Q 000191 976 TMKSYGDLAVFYYRLQHTELALKYVKRA--------------------------LYLLHLTCGPSHPNTAATYINVAMME 1029 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdyeeALey~~kA--------------------------LeL~~ki~G~dhP~~a~a~~NLA~iy 1029 (1888)
.-..++..-.+...+|+..-|.+.|.+- ..+++.. ---||.+ ..+...|..-
T Consensus 140 VdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerf-V~~HP~v-~~wikyarFE 217 (677)
T KOG1915|consen 140 VDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERF-VLVHPKV-SNWIKYARFE 217 (677)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHH-heecccH-HHHHHHHHHH
Confidence 2233333333333444444444333322 2222221 1237764 5677788888
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 000191 1030 EGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL 1109 (1888)
Q Consensus 1030 ~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~L 1109 (1888)
...|+..-|...|++|++.. |. .......+...|..-..++.++.|...|+-|+.-. ..+ ++.+....+
T Consensus 218 ~k~g~~~~aR~VyerAie~~----~~-d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~----pk~--raeeL~k~~ 286 (677)
T KOG1915|consen 218 EKHGNVALARSVYERAIEFL----GD-DEEAEILFVAFAEFEERQKEYERARFIYKYALDHI----PKG--RAEELYKKY 286 (677)
T ss_pred HhcCcHHHHHHHHHHHHHHh----hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----Ccc--cHHHHHHHH
Confidence 89999999999999999875 32 23344455555655566667777777666665432 111 222333333
Q ss_pred HHHHHHHHHHH---HHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000191 1110 EYFESKAFEQQ---EAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 1171 (1888)
Q Consensus 1110 a~L~qka~e~A---eAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALe 1171 (1888)
..+..+-++.. .++.......-......+....+.-+.+| .+....|+.+.-.+.|++|+.
T Consensus 287 ~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdyl-rL~e~~g~~~~Ire~yErAIa 350 (677)
T KOG1915|consen 287 TAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYL-RLEESVGDKDRIRETYERAIA 350 (677)
T ss_pred HHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHH-HHHHhcCCHHHHHHHHHHHHc
Confidence 34443333321 11111111111112222233333333333 334455888888888888775
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.095 Score=63.44 Aligned_cols=134 Identities=23% Similarity=0.175 Sum_probs=88.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhcCCCChhh
Q 000191 899 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG--DFNQATIYQQKALDINERELGLDHPDT 976 (1888)
Q Consensus 899 lG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lG--dyeeAl~~~eKAL~I~Er~lG~Dhp~t 976 (1888)
.-.+++..++++.|...++.+-+. .. +...+....|++....| .+.+|...|++... ..+.+
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~-----~e---D~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--------~~~~t 200 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQI-----DE---DSILTQLAEAWVNLATGGEKYQDAFYIFEELSD--------KFGST 200 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCC-----SC---CHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--------CS--S
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc-----CC---cHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--------ccCCC
Confidence 457888999999998877665332 22 22223333445555566 57888887776422 23456
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHhcCC
Q 000191 977 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNV-HVALRYLHKALKCNQRLLGP 1055 (1888)
Q Consensus 977 a~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~y-eeAle~LekALei~ek~~G~ 1055 (1888)
...++.+|.++..+|+|++|...+.+|+.. .|....++.|++.+...+|+. +.+.+++.+.... .+
T Consensus 201 ~~~lng~A~~~l~~~~~~eAe~~L~~al~~--------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~-----~p 267 (290)
T PF04733_consen 201 PKLLNGLAVCHLQLGHYEEAEELLEEALEK--------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS-----NP 267 (290)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH-----TT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh-----CC
Confidence 788899999999999999999999998742 344566888999999999998 5566666654433 36
Q ss_pred CcHHHH
Q 000191 1056 DHIQTA 1061 (1888)
Q Consensus 1056 d~~~tA 1061 (1888)
+|+.+.
T Consensus 268 ~h~~~~ 273 (290)
T PF04733_consen 268 NHPLVK 273 (290)
T ss_dssp TSHHHH
T ss_pred CChHHH
Confidence 666543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.026 Score=65.01 Aligned_cols=98 Identities=16% Similarity=0.162 Sum_probs=86.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 000191 981 GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT 1060 (1888)
Q Consensus 981 ~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~t 1060 (1888)
..-|..|+...+|..|+.+|.+|+.+ .|..+..|.|-|.+|.++.+|+.+..-..+|+++. ++.
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~--------~N~ 77 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD--------PNL 77 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC--------hHH
Confidence 34466778888999999999999975 57788889999999999999999999999999874 677
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000191 1061 AASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 1094 (1888)
Q Consensus 1061 A~al~nLA~ay~~lGdydeAle~lqkALeI~kk~ 1094 (1888)
+..++-||..+.....|++|+..+++|+.+++..
T Consensus 78 vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 78 VKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 8899999999999999999999999999988764
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.60 E-value=3.3 Score=53.91 Aligned_cols=126 Identities=14% Similarity=0.059 Sum_probs=63.5
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000191 931 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010 (1888)
Q Consensus 931 hpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki 1010 (1888)
+.....+++++|..+..+..+++|.+||.+.-.. -++..+|+++.+|++-..+. ..
T Consensus 792 D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~----------------e~~~ecly~le~f~~LE~la--------~~ 847 (1189)
T KOG2041|consen 792 DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT----------------ENQIECLYRLELFGELEVLA--------RT 847 (1189)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----------------HhHHHHHHHHHhhhhHHHHH--------Hh
Confidence 3444567777777777777777777777654221 12333444444444322211 11
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHH-------------------HHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 000191 1011 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLH-------------------KALKCNQRLLGPDHIQTAASYHAIAIAL 1071 (1888)
Q Consensus 1011 ~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~Le-------------------kALei~ek~~G~d~~~tA~al~nLA~ay 1071 (1888)
+..+|+. +--+|.++...|--++|.+.|- +|+++.++. .-+++...+...|.-+
T Consensus 848 Lpe~s~l----lp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~---~l~qv~tliak~aaql 920 (1189)
T KOG2041|consen 848 LPEDSEL----LPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRF---QLPQVQTLIAKQAAQL 920 (1189)
T ss_pred cCcccch----HHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhc---cchhHHHHHHHHHHHH
Confidence 2233332 2235555555555555555442 233333222 1233333333344455
Q ss_pred HHcCChHHHHHHHHHH
Q 000191 1072 SLMEAYPLSVQHEQTT 1087 (1888)
Q Consensus 1072 ~~lGdydeAle~lqkA 1087 (1888)
...++.-+|++.+++|
T Consensus 921 l~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 921 LADANHMEAIEKDRKA 936 (1189)
T ss_pred HhhcchHHHHHHhhhc
Confidence 5667778888888776
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.052 Score=67.33 Aligned_cols=131 Identities=15% Similarity=0.103 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHh
Q 000191 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT--MKSYGDLAVFYYRLQHTELALKYVKRALY-LLHLT 1010 (1888)
Q Consensus 934 ~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~t--a~ay~nLA~ly~~lGdyeeALey~~kALe-L~~ki 1010 (1888)
.+.++..-+..+|..|+|..|..++...=.. +...|.-.|.. ...++|||.+++++|.|..+..+|.+|+. .+..+
T Consensus 239 s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~-~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 239 SSMALLLKSQLEYAHGNHPKAMKLLLVSNIH-KEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred CcHHHHHHHHHHHHhcchHHHHHHHHhcccc-cccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 3457778899999999999999877644222 22112223333 34568999999999999999999999995 44333
Q ss_pred -cCCC--------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 000191 1011 -CGPS--------HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL 1073 (1888)
Q Consensus 1011 -~G~d--------hP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~ 1073 (1888)
-|-. ......+++|.|..|...|+.-.|.++|.+|...+.+. ..+|..||.++..
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n--------PrlWLRlAEcCim 381 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN--------PRLWLRLAECCIM 381 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC--------cHHHHHHHHHHHH
Confidence 1200 11235678999999999999999999999999988542 3567777877653
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.58 E-value=1.2 Score=54.38 Aligned_cols=253 Identities=15% Similarity=0.100 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRM-TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe-~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...+..+..++..|+++++..+++++.......+...... ...+|..|..+ ..+.+.+++..+.......
T Consensus 30 ~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~l-q~L~Elee~~~~~~~~~~~-------- 100 (352)
T PF02259_consen 30 EYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKL-QQLVELEEIIELKSNLSQN-------- 100 (352)
T ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-hHHHHHHHHHHHHHhhccc--------
Confidence 3344455666789999999999999988755443332222 22333333322 2233344444433211100
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC--CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG--PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G--~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
+...... +-..-.+...........+..+.+...++. ......+.++..++.+....|+++.|..++.++.....
T Consensus 101 -~~~~~~l--~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~ 177 (352)
T PF02259_consen 101 -PQDLKSL--LKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNP 177 (352)
T ss_pred -HHHHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCC
Confidence 0000000 111111222222333344444444443333 11345678899999999999999999999988776431
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000191 1051 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ-ILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRK 1129 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALe-I~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~ 1129 (1888)
.. ......+.+..|.++...|+..+|+..+++.+. .+....+....... ..++.. .....
T Consensus 178 ~~----~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~--~~~~~~-------------~~~~~ 238 (352)
T PF02259_consen 178 SS----ESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAEL--KSGLLE-------------SLEVI 238 (352)
T ss_pred cc----cCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHH--hhcccc-------------ccccc
Confidence 11 111334556668999999999999999987776 33322221111100 001000 00000
Q ss_pred CchhhhhcCCccHHHHHHHHHHHHHHc------CChHHHHHHHHHHHHHhcccc
Q 000191 1130 PDASIASKGHLSVSDLLDYINPSHDTK------GRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1130 ~~~~~as~~~~svaelL~~Lg~~y~~q------GdyeEAleyyeKALeL~dSi~ 1177 (1888)
.............+.++..+|...... +.+++++.+|.++.++.++.+
T Consensus 239 ~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 292 (352)
T PF02259_consen 239 SSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE 292 (352)
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence 000001111224456677777777666 888999999999999887655
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.29 Score=52.58 Aligned_cols=112 Identities=21% Similarity=0.136 Sum_probs=80.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC--C------------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 000191 980 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS--H------------PNTAATYINVAMMEEGLGNVHVALRYLHKA 1045 (1888)
Q Consensus 980 y~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~d--h------------P~~a~a~~NLA~iy~~lG~yeeAle~LekA 1045 (1888)
+...|......++.+.++..+++++.++.--+-.+ . .....++..++..+...|++++|+.+++++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34445556677888889999999988875322111 1 112456677888889999999999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC
Q 000191 1046 LKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDD 1099 (1888)
Q Consensus 1046 Lei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh 1099 (1888)
+.+. |..-.++..+-.+|...|+..+|+..|++....+.+.+|..-
T Consensus 89 l~~d--------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~P 134 (146)
T PF03704_consen 89 LALD--------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEP 134 (146)
T ss_dssp HHHS--------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS---
T ss_pred HhcC--------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCc
Confidence 9873 445567888899999999999999999999999999888653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.32 Score=54.85 Aligned_cols=128 Identities=13% Similarity=0.047 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC
Q 000191 913 VTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH 992 (1888)
Q Consensus 913 ie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGd 992 (1888)
++-++.-|..++.-.+ ...+..++..+|..|...|++++|++.|.++...+ ......+..+.++-.+....++
T Consensus 16 ~~~Le~elk~~~~n~~--kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-----~~~~~~id~~l~~irv~i~~~d 88 (177)
T PF10602_consen 16 LEKLEAELKDAKSNLG--KESIRMALEDLADHYCKIGDLEEALKAYSRARDYC-----TSPGHKIDMCLNVIRVAIFFGD 88 (177)
T ss_pred HHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHHHHHhCC
Confidence 3334444444444332 34667899999999999999999999999977653 2233467788889999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 993 TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 993 yeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
+.....++.+|-.+... |.+..........-|..+...++|.+|-..|-.++.-+
T Consensus 89 ~~~v~~~i~ka~~~~~~--~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 89 WSHVEKYIEKAESLIEK--GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 99999999999998766 33322233334446777778899999999887776443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.37 E-value=1.3 Score=52.45 Aligned_cols=145 Identities=16% Similarity=0.093 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 936 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 1015 (1888)
Q Consensus 936 ~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dh 1015 (1888)
..+..-|.+|.+-|++++|+....+...+ .++..--.++.++.+++-|...+++...+...
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~~~l-------------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided------ 169 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLGENL-------------EAAALNVQILLKMHRFDLAEKELKKMQQIDED------ 169 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhccchH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHccchH------
Confidence 34445578889999999998877663222 12222234566777888888888887765321
Q ss_pred hhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000191 1016 PNTAATYINVAMMEEG----LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1016 P~~a~a~~NLA~iy~~----lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
.++..||..|.. -+++.+|.-+|++--+ . .+.+..++..+|.++..+|+|++|...+++|+.-
T Consensus 170 ----~tLtQLA~awv~la~ggek~qdAfyifeE~s~-------k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k- 236 (299)
T KOG3081|consen 170 ----ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE-------K-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK- 236 (299)
T ss_pred ----HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc-------c-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 223334444432 2346666666654322 1 2335567788899999999999999999999843
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHH
Q 000191 1092 RAKLGPDDLRTQDAAAWLEYFESKA 1116 (1888)
Q Consensus 1092 kk~LG~dh~~tl~a~~~La~L~qka 1116 (1888)
...++.++..+..++....+.
T Consensus 237 ----d~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 237 ----DAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred ----cCCCHHHHHHHHHHHHHhCCC
Confidence 355666665555555544443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.21 E-value=2.5 Score=50.85 Aligned_cols=80 Identities=21% Similarity=0.189 Sum_probs=59.7
Q ss_pred cHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHH-h-cCCCCh----hHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 000191 889 SSADGRQLLESSKTALDKG-KLEDAVTYGTKALAKLVA-V-CGPYHR----MTAGAYSLLAVVLYHTGDFNQATIYQQKA 961 (1888)
Q Consensus 889 ~s~~A~~LlelG~~~l~qG-d~dEAie~~eeAL~l~eq-i-~G~dhp----e~A~ay~~LA~ly~~lGdyeeAl~~~eKA 961 (1888)
....++.+|+.|...+..+ ++++|..++++|+++++. . ....++ ....++..|+.+|...+.++.... ..++
T Consensus 31 ~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k-a~~~ 109 (278)
T PF08631_consen 31 AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK-ALNA 109 (278)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH-HHHH
Confidence 3466899999999999999 999999999999999755 1 112233 346789999999999998764433 4455
Q ss_pred HHHHHHhc
Q 000191 962 LDINEREL 969 (1888)
Q Consensus 962 L~I~Er~l 969 (1888)
+...+.-+
T Consensus 110 l~~l~~e~ 117 (278)
T PF08631_consen 110 LRLLESEY 117 (278)
T ss_pred HHHHHHhC
Confidence 55555443
|
It is also involved in sporulation []. |
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.11 Score=62.31 Aligned_cols=104 Identities=21% Similarity=0.251 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.|..+-+.|..|+...+|..|+..|.++|..- + .+....+.+|.|.|.+.+.+|+|-.|+.-+.+|+.+
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k---c-~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~------- 148 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKK---C-ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL------- 148 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc---C-CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 58889999999999999999999999998762 1 333455789999999999999999999999999886
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 1007 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~ 1007 (1888)
.|....+|+.-|.|++.+.++++|..+++..+.+.
T Consensus 149 -~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 149 -KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred -CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 57778999999999999999999999999887664
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.05 E-value=3.6 Score=50.83 Aligned_cols=162 Identities=17% Similarity=-0.024 Sum_probs=94.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 000191 900 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMT-AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK 978 (1888)
Q Consensus 900 G~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~-A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ 978 (1888)
++..+-.|+++.|..-|+-.+. +|++ ..-+..|=.--..+|+.+.|..|.+.|.... |....
T Consensus 127 AQaal~eG~~~~Ar~kfeAMl~---------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A--------p~l~W 189 (531)
T COG3898 127 AQAALLEGDYEDARKKFEAMLD---------DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA--------PQLPW 189 (531)
T ss_pred HHHHHhcCchHHHHHHHHHHhc---------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc--------cCCch
Confidence 5677788999999999987664 3442 1223333334457899999999999987763 33333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 979 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN--TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 1056 (1888)
Q Consensus 979 ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~--~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d 1056 (1888)
+...+=...+..|+++.|+++......... .+++-.+ .+..+.--+..+. .-+...|.....+++++..
T Consensus 190 A~~AtLe~r~~~gdWd~AlkLvd~~~~~~v--ie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~p------ 260 (531)
T COG3898 190 AARATLEARCAAGDWDGALKLVDAQRAAKV--IEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLAP------ 260 (531)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHh--hchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCC------
Confidence 333333445678999999999987766432 2332211 1222222222222 2245566666666666531
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000191 1057 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1057 ~~~tA~al~nLA~ay~~lGdydeAle~lqkALe 1089 (1888)
..+-.-..-|.+|+..|+..++-..++.+.+
T Consensus 261 --dlvPaav~AAralf~d~~~rKg~~ilE~aWK 291 (531)
T COG3898 261 --DLVPAAVVAARALFRDGNLRKGSKILETAWK 291 (531)
T ss_pred --ccchHHHHHHHHHHhccchhhhhhHHHHHHh
Confidence 1222222336666777777777666665553
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.8 Score=52.03 Aligned_cols=100 Identities=14% Similarity=-0.033 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 000191 978 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 1057 (1888)
Q Consensus 978 ~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~ 1057 (1888)
.+...+|..+...+++++|+..++.++..- .+......+-.+||.+...+|++++|+..+...- ++
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t-----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~---------~~ 155 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQT-----KDENLKALAALRLARVQLQQKKADAALKTLDTIK---------EE 155 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccc-----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc---------cc
Confidence 455678889999999999999999998632 2223345566789999999999999988776432 23
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000191 1058 IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1058 ~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
...+......|.++...|+-++|...|++|++..
T Consensus 156 ~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 156 SWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3455556677999999999999999999999763
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.24 Score=57.37 Aligned_cols=106 Identities=14% Similarity=0.056 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC---CChh-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP---YHRM-------TAGAYSLLAVVLYHTGDFNQATIYQQKAL 962 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~---dhpe-------~A~ay~~LA~ly~~lGdyeeAl~~~eKAL 962 (1888)
...+.+.|+-++.+|+|.+|...|++|+..++++.-. ..++ ....+.|++.++...|+|-++++.....|
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 3456778899999999999999999999877665322 2222 23467899999999999999999988877
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 963 DINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 963 ~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
.. ++....+|+.-|..+...-+.++|..-|.++|++
T Consensus 258 ~~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 258 RH--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred hc--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 64 6788999999999999999999999999999985
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.96 Score=53.07 Aligned_cols=206 Identities=10% Similarity=0.030 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 973 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh 973 (1888)
..|-+.-.+++.+|+|++-.+.|.+.|..........+.+ .+.+.+-..-....+.+--..+|+-.+...+... +.
T Consensus 66 KALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySE--KsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAK--Ne 141 (440)
T KOG1464|consen 66 KALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSE--KSINSILDYISTSKNMDLLQEFYETTLDALKDAK--NE 141 (440)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhh--cc
Confidence 3444555788899999999999999998766554444333 2222222211223333444456666555544421 22
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC----hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 974 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH----PNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dh----P~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
......-..||.+|+..++|.+-.+.+++.-.-++.--|.++ .....+|.---.+|..+++-.+-..+|++||.+.
T Consensus 142 RLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiK 221 (440)
T KOG1464|consen 142 RLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIK 221 (440)
T ss_pred eeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhh
Confidence 223345567999999999999888887777666655555543 2345666666678888888888888999999886
Q ss_pred HHhcCCCcHHHH-HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 000191 1050 QRLLGPDHIQTA-ASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL 1109 (1888)
Q Consensus 1050 ek~~G~d~~~tA-~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~L 1109 (1888)
..+ .||... .+.--=|..+.+.|+|++|..-|-+|..-+... ..++...++.+|
T Consensus 222 SAI---PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEs---GspRRttCLKYL 276 (440)
T KOG1464|consen 222 SAI---PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDES---GSPRRTTCLKYL 276 (440)
T ss_pred ccC---CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccccc---CCcchhHHHHHH
Confidence 544 344333 233333566778899999988887776554432 334444444444
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.31 Score=49.11 Aligned_cols=84 Identities=17% Similarity=0.164 Sum_probs=65.0
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 000191 1029 EEGLGNVHVALRYLHKALKCNQRLLGPD-HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAA 1107 (1888)
Q Consensus 1029 y~~lG~yeeAle~LekALei~ek~~G~d-~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~ 1107 (1888)
..+.|+|..|++.+.+.++......... ......++.++|.++...|++++|+..+++|+++.++. .|......++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~ 85 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALS 85 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHH
Confidence 3478999999999999999876653322 12456678889999999999999999999999999875 44445566677
Q ss_pred HHHHHHH
Q 000191 1108 WLEYFES 1114 (1888)
Q Consensus 1108 ~La~L~q 1114 (1888)
|+..+..
T Consensus 86 ~~~~l~~ 92 (94)
T PF12862_consen 86 WLANLLK 92 (94)
T ss_pred HHHHHhh
Confidence 7766543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.58 E-value=4.4 Score=49.47 Aligned_cols=132 Identities=17% Similarity=0.174 Sum_probs=95.4
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HHHH
Q 000191 889 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD-INER 967 (1888)
Q Consensus 889 ~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~-I~Er 967 (1888)
....+..++..+..+...|+++.|..++.++..... ........+....+.+++..|+..+|+..++..+. ....
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~----~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~ 217 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNP----SSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSK 217 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCC----cccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Confidence 334577888889999999999999999988766421 11122345677789999999999999999988877 3222
Q ss_pred hc-------------------------CCCChhhHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000191 968 EL-------------------------GLDHPDTMKSYGDLAVFYYRL------QHTELALKYVKRALYLLHLTCGPSHP 1016 (1888)
Q Consensus 968 ~l-------------------------G~Dhp~ta~ay~nLA~ly~~l------GdyeeALey~~kALeL~~ki~G~dhP 1016 (1888)
.. .......+.++..+|...... +.+++++.+|.+|+.+. |
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~--------~ 289 (352)
T PF02259_consen 218 NIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLD--------P 289 (352)
T ss_pred ccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhC--------h
Confidence 10 111234567888888888888 88899999999998863 4
Q ss_pred hHHHHHHHHHHHHHHC
Q 000191 1017 NTAATYINVAMMEEGL 1032 (1888)
Q Consensus 1017 ~~a~a~~NLA~iy~~l 1032 (1888)
....+++.+|..+...
T Consensus 290 ~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 290 SWEKAWHSWALFNDKL 305 (352)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 5556777777766543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=94.51 E-value=1.9 Score=54.03 Aligned_cols=153 Identities=16% Similarity=0.050 Sum_probs=104.6
Q ss_pred CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC---------------------CChhhHHHHHHHHHHHH
Q 000191 930 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL---------------------DHPDTMKSYGDLAVFYY 988 (1888)
Q Consensus 930 dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~---------------------Dhp~ta~ay~nLA~ly~ 988 (1888)
.+|....++..++.++.++|++..|.++.++||-.+++.+.. ++.....++......+.
T Consensus 35 ~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~ 114 (360)
T PF04910_consen 35 KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLG 114 (360)
T ss_pred HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHH
Confidence 367777899999999999999999999999999998865321 12233455566677778
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 000191 989 RLQHTELALKYVKRALYLLHLTCGPS-HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAI 1067 (1888)
Q Consensus 989 ~lGdyeeALey~~kALeL~~ki~G~d-hP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nL 1067 (1888)
+.|-+..|+++.+-.+.+ .+. +|.- ++..|-....+.++|+--+++++.......+. .........+.+
T Consensus 115 ~RG~~rTAlE~~KlLlsL-----dp~~DP~g--~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~lPn~a~S~ 184 (360)
T PF04910_consen 115 RRGCWRTALEWCKLLLSL-----DPDEDPLG--VLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSLLPNFAFSI 184 (360)
T ss_pred hcCcHHHHHHHHHHHHhc-----CCCCCcch--hHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhhCccHHHHH
Confidence 889999999888776664 333 4533 34445555667788877777776554421110 000112345566
Q ss_pred HHHHHHcCCh---------------HHHHHHHHHHHHHHH
Q 000191 1068 AIALSLMEAY---------------PLSVQHEQTTLQILR 1092 (1888)
Q Consensus 1068 A~ay~~lGdy---------------deAle~lqkALeI~k 1092 (1888)
|.++...++- +.|...+++|+..+-
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 8888888887 889999999987653
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.45 Score=47.92 Aligned_cols=82 Identities=20% Similarity=0.148 Sum_probs=62.3
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 000191 987 YYRLQHTELALKYVKRALYLLHLTCGPSH-PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYH 1065 (1888)
Q Consensus 987 y~~lGdyeeALey~~kALeL~~ki~G~dh-P~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~ 1065 (1888)
..+.|+|..|++.+.+..+.........+ .....++.++|.++...|++++|+..+++|+++.++. .+....+.++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~ 85 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALS 85 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHH
Confidence 45789999999999999998766433221 1345678889999999999999999999999999887 34444555554
Q ss_pred HHHHH
Q 000191 1066 AIAIA 1070 (1888)
Q Consensus 1066 nLA~a 1070 (1888)
.++.+
T Consensus 86 ~~~~l 90 (94)
T PF12862_consen 86 WLANL 90 (94)
T ss_pred HHHHH
Confidence 44444
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.35 Score=56.11 Aligned_cols=105 Identities=15% Similarity=0.110 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC---hh-------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000191 936 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH---PD-------TMKSYGDLAVFYYRLQHTELALKYVKRALY 1005 (1888)
Q Consensus 936 ~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh---p~-------ta~ay~nLA~ly~~lGdyeeALey~~kALe 1005 (1888)
.+++.-|+-++.+|+|.+|...|+.|+...+.+.-... ++ ....|.|.+.|+...|+|-+++++....|.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 46777889999999999999999999998776543222 22 234678999999999999999998888776
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000191 1006 LLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 1006 L~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
. ||....+|+..|.+....=+.++|.+-|.++|++
T Consensus 259 ~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 259 H--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred c--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 3 7888899999999999999999999999999886
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.19 E-value=5.8 Score=50.12 Aligned_cols=159 Identities=14% Similarity=0.090 Sum_probs=110.7
Q ss_pred HHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 000191 904 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 983 (1888)
Q Consensus 904 l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nL 983 (1888)
+...+.+.+.+.|+.+|.+. ...+-..+..+...|....++.+...|...+-.|+-.+-+ ..+...|..|
T Consensus 377 le~ed~ertr~vyq~~l~lI----PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK------~KlFk~YIel 446 (677)
T KOG1915|consen 377 LEAEDVERTRQVYQACLDLI----PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK------DKLFKGYIEL 446 (677)
T ss_pred HHhhhHHHHHHHHHHHHhhc----CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc------hhHHHHHHHH
Confidence 45678899999999999873 2334456888999999999999999999999888877533 2344555544
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 000191 984 AVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAAS 1063 (1888)
Q Consensus 984 A~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~a 1063 (1888)
...+++++.+..+|++-|+. .|....++...|.+-..+|+.+.|...|+-|+.--. .+.+.. +
T Consensus 447 ---ElqL~efDRcRkLYEkfle~--------~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~----ldmpel--l 509 (677)
T KOG1915|consen 447 ---ELQLREFDRCRKLYEKFLEF--------SPENCYAWSKYAELETSLGDTDRARAIFELAISQPA----LDMPEL--L 509 (677)
T ss_pred ---HHHHhhHHHHHHHHHHHHhc--------ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc----cccHHH--H
Confidence 45667788888888887763 578889999999999999999999999998775321 111111 1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 000191 1064 YHAIAIALSLMEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1064 l~nLA~ay~~lGdydeAle~lqkALe 1089 (1888)
+-..-..-...|.++.|..+|++-++
T Consensus 510 wkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 510 WKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 11111122345666666666665553
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.17 E-value=1.7 Score=51.53 Aligned_cols=226 Identities=11% Similarity=-0.012 Sum_probs=123.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH----HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 940 LLAVVLYHTGDFNQATIYQQKALDI----NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 1015 (1888)
Q Consensus 940 ~LA~ly~~lGdyeeAl~~~eKAL~I----~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dh 1015 (1888)
.+|+-.....++++|+..|.+.+.- -+++. .+.-.+..+|+.+|...|++..--+......+.|.....
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~----nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk--- 80 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL----NEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTK--- 80 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh----hHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcc---
Confidence 3455555566777777766665543 11111 122356789999999999998877777777777766432
Q ss_pred hhHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000191 1016 PNTAATYINVAMME-EGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 1094 (1888)
Q Consensus 1016 P~~a~a~~NLA~iy-~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~ 1094 (1888)
|.+..+...|-..+ .....++.-+..+...++...+- .........-..++.+|++.|.|.+|+....-.+.-+++.
T Consensus 81 ~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rE--kr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~ 158 (421)
T COG5159 81 PKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADRE--KRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY 158 (421)
T ss_pred hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence 33333332222222 23445666777776666654332 0111122333456778999999999999998888877765
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHh
Q 000191 1095 LGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSH-DTKGRNVSTLKRKTYVAKVK 1173 (1888)
Q Consensus 1095 LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y-~~qGdyeEAleyyeKALeL~ 1173 (1888)
-+.-...+...+..-.+..-+.....++-.-.++.. +...-.++....-+..+.+++ +.-.+|.-|..||-.|++-.
T Consensus 159 DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~--Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 159 DDKINLITVHLLESKVYHEIRNVSKSKASLTAARTL--ANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred cCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHH--hhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcc
Confidence 443333333333322333333333222211110000 001111122222344454444 66788999999998887755
Q ss_pred ccc
Q 000191 1174 GNF 1176 (1888)
Q Consensus 1174 dSi 1176 (1888)
..+
T Consensus 237 t~l 239 (421)
T COG5159 237 TLL 239 (421)
T ss_pred ccc
Confidence 443
|
|
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=94.13 E-value=7.4 Score=46.18 Aligned_cols=183 Identities=14% Similarity=0.081 Sum_probs=111.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC---C-------hhHHHHHHHHHHHHHhcC--------------CHHH
Q 000191 898 ESSKTALDKGKLEDAVTYGTKALAKLVAVCGPY---H-------RMTAGAYSLLAVVLYHTG--------------DFNQ 953 (1888)
Q Consensus 898 elG~~~l~qGd~dEAie~~eeAL~l~eqi~G~d---h-------pe~A~ay~~LA~ly~~lG--------------dyee 953 (1888)
...+.++..|+..+|+..++.=+..+..+.|.. . ...+.-|..+|.+..... -|..
T Consensus 15 ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~yy~~ 94 (247)
T PF11817_consen 15 KICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFYYQI 94 (247)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchHHHH
Confidence 345788899999999999999999888876651 1 222334455555554432 1233
Q ss_pred HHHHHHHHHHHHHHhcC-CC-------------------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 954 ATIYQQKALDINERELG-LD-------------------HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 1013 (1888)
Q Consensus 954 Al~~~eKAL~I~Er~lG-~D-------------------hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~ 1013 (1888)
|..+...--..++.... ++ .+.....+..+.............++++.+|+..+... +.
T Consensus 95 AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~-~~ 173 (247)
T PF11817_consen 95 AAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKY-GQ 173 (247)
T ss_pred HHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHh-cc
Confidence 33333222222333210 01 00000111111111112234456788888998887763 22
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 000191 1014 SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHE 1084 (1888)
Q Consensus 1014 dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~l 1084 (1888)
.-....+...+|.-|...|+|++|+.+|+.+...+++- .-......++..+..++..+|+.+..+...
T Consensus 174 -~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 174 -NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred -chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 34455667789999999999999999999997776543 233445677888899999999988776654
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.87 E-value=1.8 Score=51.85 Aligned_cols=144 Identities=19% Similarity=0.132 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHH
Q 000191 894 RQLLESSKTALD----KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH----TGDFNQATIYQQKALDIN 965 (1888)
Q Consensus 894 ~~LlelG~~~l~----qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~----lGdyeeAl~~~eKAL~I~ 965 (1888)
...+.++..|.. ..+..+|+.+|+.+... ..+.+.+.||.+|.. ..++.+|..+|++|...
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~----------g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~- 142 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCAAAD----------GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL- 142 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHHhhc----------ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-
Confidence 344444555443 23467788888754432 234577789999887 45899999999999875
Q ss_pred HHhcCCCChhhHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCC
Q 000191 966 ERELGLDHPDTMKSYGDLAVFYYRLQ-------HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGN 1034 (1888)
Q Consensus 966 Er~lG~Dhp~ta~ay~nLA~ly~~lG-------dyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~----lG~ 1034 (1888)
| ++.-..+..+||.+|..-. +...|+.+|.+|-.. .+ ..+..++|.+|.. ..+
T Consensus 143 ----g--~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~-------~~---~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 143 ----G--NVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL-------GN---PDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred ----C--ChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh-------cC---HHHHHHHHHHHHcCCCCCcC
Confidence 2 2221455778888887652 223577777766653 23 3567788988864 348
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcC
Q 000191 1035 VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLME 1075 (1888)
Q Consensus 1035 yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lG 1075 (1888)
+.+|..||.+|-+.- + ....+.++ ++...|
T Consensus 207 ~~~A~~wy~~Aa~~g-------~---~~a~~~~~-~~~~~g 236 (292)
T COG0790 207 LKKAFRWYKKAAEQG-------D---GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHHHHHHHHHHCC-------C---HHHHHHHH-HHHhcC
Confidence 999999999987652 2 45666777 555555
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.12 Score=42.79 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 000191 937 AYSLLAVVLYHTGDFNQATIYQQKALDINER 967 (1888)
Q Consensus 937 ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er 967 (1888)
+|.+||.+|..+|+|++|+.+|+++|.+.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 5789999999999999999999999987654
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.78 E-value=1.3 Score=53.08 Aligned_cols=145 Identities=17% Similarity=0.196 Sum_probs=97.3
Q ss_pred HHHHHHhhhhhhcccccCCCCCCh-------hHHHHhhhccchhhhcccHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000191 848 RGLCHKVGIELVSRDFDMDSPSPF-------RKIDVVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKAL 920 (1888)
Q Consensus 848 ReLc~klGIqL~aR~Y~fdsa~~F-------~~eDIlnl~PvvK~~~~~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL 920 (1888)
..+..++|||-..-.|-|....+. -++.|..+... + ... .....+..+...+..|++.+|...|..++
T Consensus 87 p~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesqlr~~ld~--~-~~~--~~e~~~~~~~~~~~~e~~~~a~~~~~~al 161 (304)
T COG3118 87 PMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQLRQFLDK--V-LPA--EEEEALAEAKELIEAEDFGEAAPLLKQAL 161 (304)
T ss_pred hhHHHHhCcCcCCeEEEeeCCcCccccCCCCcHHHHHHHHHH--h-cCh--HHHHHHHHhhhhhhccchhhHHHHHHHHH
Confidence 456688999887888877544321 11112221111 1 111 33445666788889999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHH---------------HHHHHHHhcCC-----------CCh
Q 000191 921 AKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQK---------------ALDINERELGL-----------DHP 974 (1888)
Q Consensus 921 ~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eK---------------AL~I~Er~lG~-----------Dhp 974 (1888)
... ++...+...||.+|...|+.+.|...+.. .+++.++.-.. .+|
T Consensus 162 ~~~--------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadP 233 (304)
T COG3118 162 QAA--------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADP 233 (304)
T ss_pred HhC--------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCC
Confidence 873 34456788899999999999887766533 24444443222 245
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000191 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALY 1005 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALe 1005 (1888)
+...+-+.||..|...|+++.|++++-..+.
T Consensus 234 dd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 234 DDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5667778999999999999999987765544
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.13 Score=42.58 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000191 979 SYGDLAVFYYRLQHTELALKYVKRALYLLHL 1009 (1888)
Q Consensus 979 ay~nLA~ly~~lGdyeeALey~~kALeL~~k 1009 (1888)
+|.+||.+|..+|+|++|+.+|+++|.+...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 5789999999999999999999999977654
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.5 Score=57.03 Aligned_cols=107 Identities=19% Similarity=0.151 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000191 932 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 1011 (1888)
Q Consensus 932 pe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~ 1011 (1888)
.++|.-|..-|.-|+.-.+|..|+..|.++|.. + -.|..-.+..|.|-|.+...+|+|..|+.-+.+|+.+
T Consensus 78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~--k--c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~----- 148 (390)
T KOG0551|consen 78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK--K--CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL----- 148 (390)
T ss_pred HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh--c--CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 357888888999999999999999999999875 2 2333445688999999999999999999999999875
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000191 1012 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 1012 G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
.|..+.+++.-|.++..+.++.+|..|+++.+.+..
T Consensus 149 ---~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 149 ---KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred ---CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 466678899999999999999999999999987753
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.55 E-value=2.4 Score=48.34 Aligned_cols=100 Identities=18% Similarity=0.036 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 936 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 1015 (1888)
Q Consensus 936 ~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dh 1015 (1888)
.+...+|..+...+++++|+..++.++... .|......+-.+||.+...+|.+++|+..+...- ++
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t-----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~---------~~ 155 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQT-----KDENLKALAALRLARVQLQQKKADAALKTLDTIK---------EE 155 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccc-----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc---------cc
Confidence 345678899999999999999999998652 2334445667789999999999999997665432 23
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 1016 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1016 P~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
..........|.+|...|+-++|+..|++|+...
T Consensus 156 ~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 156 SWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3344445567999999999999999999999873
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.68 Score=55.80 Aligned_cols=134 Identities=16% Similarity=0.170 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 937 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR-LQHTELALKYVKRALYLLHLTCGPSH 1015 (1888)
Q Consensus 937 ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~-lGdyeeALey~~kALeL~~ki~G~dh 1015 (1888)
+|..+.....+.+..+.|...|.+|+. +...+...|...|.+.+. .++.+.|...|++++..+ +..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~--------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-----~~~ 69 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK--------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-----PSD 69 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-----TT-
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-----CCC
Confidence 455555666666678888888888862 123345778889999777 566666999999999864 223
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000191 1016 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1016 P~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
++. +......+...++.+.|..+|++++... ........++......-...|+.+.....++++.+++
T Consensus 70 ~~~---~~~Y~~~l~~~~d~~~aR~lfer~i~~l-----~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 70 PDF---WLEYLDFLIKLNDINNARALFERAISSL-----PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp HHH---HHHHHHHHHHTT-HHHHHHHHHHHCCTS-----SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred HHH---HHHHHHHHHHhCcHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 333 4444577789999999999999998653 1111133456666667777888888888877777654
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] | Back alignment and domain information |
|---|
Probab=93.48 E-value=5.5 Score=50.84 Aligned_cols=115 Identities=12% Similarity=-0.020 Sum_probs=76.1
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC--hhhHHHHHHHHHHHHHcCCH-------HHHHH
Q 000191 928 GPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH--PDTMKSYGDLAVFYYRLQHT-------ELALK 998 (1888)
Q Consensus 928 G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh--p~ta~ay~nLA~ly~~lGdy-------eeALe 998 (1888)
..+.++ ..++.||.+++.+|||+.|...|+-+..-+.. |. ...+.++-..|.++...+.. +....
T Consensus 203 ~~~S~E--~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~----Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~ 276 (414)
T PF12739_consen 203 SADSPE--AQMRRLADLAFMLRDYELAYSTYRLLKKDFKN----DKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEP 276 (414)
T ss_pred CCCChH--HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhh----chhHHHHHhHHHHHHHHHHhcCCCCccccccccHHH
Confidence 344455 56788999999999999999999988776532 22 12344555566666666643 47778
Q ss_pred HHHHHHHHHHHhcCC---CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000191 999 YVKRALYLLHLTCGP---SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 999 y~~kALeL~~ki~G~---dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
+++.|+..+...... .......+....+.++...+.+.+|...+-++...
T Consensus 277 ~le~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 277 YLENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred HHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 888888887773221 12244556666777788888877777666555443
|
Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ]. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.16 Score=40.91 Aligned_cols=30 Identities=40% Similarity=0.584 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 977 MKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 977 a~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
+.+|+++|.+|..+|++++|+.+|++|+++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 357899999999999999999999999987
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.26 E-value=3.8 Score=53.31 Aligned_cols=86 Identities=14% Similarity=-0.004 Sum_probs=50.9
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
|+...-.++.++|..+..+..+++|.+||.+.-.. -++..+|..+..|++-.. +.+
T Consensus 791 dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~----------------e~~~ecly~le~f~~LE~--------la~ 846 (1189)
T KOG2041|consen 791 DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT----------------ENQIECLYRLELFGELEV--------LAR 846 (1189)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----------------HhHHHHHHHHHhhhhHHH--------HHH
Confidence 33445577888888888888888888888765432 123444555444443211 112
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000191 1052 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 1085 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lq 1085 (1888)
.+..++ ..+-.+|.++...|--++|++.|.
T Consensus 847 ~Lpe~s----~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 847 TLPEDS----ELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred hcCccc----chHHHHHHHHHhhchHHHHHHHHH
Confidence 222333 334456778888888888777654
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.16 Score=40.85 Aligned_cols=30 Identities=37% Similarity=0.613 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000191 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDI 964 (1888)
Q Consensus 935 A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I 964 (1888)
+.+|+++|.+|..+|++++|+.+|++|+.+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 468999999999999999999999999987
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.65 Score=52.18 Aligned_cols=79 Identities=18% Similarity=0.205 Sum_probs=50.9
Q ss_pred ChhHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC----HHHHHHHHHHH
Q 000191 931 HRMTAGAYSLLAVVLYHTGDF---NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH----TELALKYVKRA 1003 (1888)
Q Consensus 931 hpe~A~ay~~LA~ly~~lGdy---eeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGd----yeeALey~~kA 1003 (1888)
+|..+..+++-|.++..+.++ .++..+++.|+.-++..+.. +|....++++||.+|..++. ..+|..+|++|
T Consensus 21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I-~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI-NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 455566777777777666544 44666666666665554433 47788899999999987754 35677777777
Q ss_pred HHHHHHh
Q 000191 1004 LYLLHLT 1010 (1888)
Q Consensus 1004 LeL~~ki 1010 (1888)
...+++.
T Consensus 100 ~~~FqkA 106 (186)
T PF06552_consen 100 TEYFQKA 106 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.64 Score=55.98 Aligned_cols=130 Identities=12% Similarity=0.018 Sum_probs=98.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 000191 901 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSY 980 (1888)
Q Consensus 901 ~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay 980 (1888)
..++..|+...-...+++.+.. ...+-|....+...+|-.+...|-|++|....++|+++ ++.-..+.
T Consensus 145 ~a~fy~G~~~~~k~ai~kIip~----wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqi--------N~~D~Wa~ 212 (491)
T KOG2610|consen 145 DAHFYNGNQIGKKNAIEKIIPK----WNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQI--------NRFDCWAS 212 (491)
T ss_pred hHHHhccchhhhhhHHHHhccc----cCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccC--------CCcchHHH
Confidence 3455678877777777666543 23344555566677888899999999999999999998 34456677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 000191 981 GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKAL 1046 (1888)
Q Consensus 981 ~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekAL 1046 (1888)
..+|.++...|++.++.+++++.-..|+.. .-....-|-..|.+|..-+.|+.|++.|.+-+
T Consensus 213 Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s----~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 213 HAKAHVLEMNGRHKEGKEFMYKTEDDWRQS----WMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHHHHHHhcchhhhHHHHHHhcccchhhh----hHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 789999999999999999999988877631 22233445667888999999999999998643
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.81 E-value=8 Score=52.52 Aligned_cols=183 Identities=16% Similarity=0.100 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----
Q 000191 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL----- 1009 (1888)
Q Consensus 935 A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~k----- 1009 (1888)
...|..||.+..+.|...+|++-|-|| |+| ..|...-....+.|.|++-.+|+..|..-.+.
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika----------dDp---s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~ 1170 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA----------DDP---SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS 1170 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc----------CCc---HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH
Confidence 457999999999999999999888665 222 35666667777888888888888777654332
Q ss_pred ------------------hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 000191 1010 ------------------TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIAL 1071 (1888)
Q Consensus 1010 ------------------i~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay 1071 (1888)
+.|+++.++ -.+|.-+...|.|+.|.-+|. ...-+..||..+
T Consensus 1171 eLi~AyAkt~rl~elE~fi~gpN~A~i----~~vGdrcf~~~~y~aAkl~y~----------------~vSN~a~La~TL 1230 (1666)
T KOG0985|consen 1171 ELIFAYAKTNRLTELEEFIAGPNVANI----QQVGDRCFEEKMYEAAKLLYS----------------NVSNFAKLASTL 1230 (1666)
T ss_pred HHHHHHHHhchHHHHHHHhcCCCchhH----HHHhHHHhhhhhhHHHHHHHH----------------HhhhHHHHHHHH
Confidence 112222111 112333333333333332222 122345577778
Q ss_pred HHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHH
Q 000191 1072 SLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINP 1151 (1888)
Q Consensus 1072 ~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~ 1151 (1888)
..+|+|..|+...++|-.+. +. -.-..+....+.+..++..-. . ..--++-+..+-.
T Consensus 1231 V~LgeyQ~AVD~aRKAns~k----------tW-K~VcfaCvd~~EFrlAQiCGL--~----------iivhadeLeeli~ 1287 (1666)
T KOG0985|consen 1231 VYLGEYQGAVDAARKANSTK----------TW-KEVCFACVDKEEFRLAQICGL--N----------IIVHADELEELIE 1287 (1666)
T ss_pred HHHHHHHHHHHHhhhccchh----------HH-HHHHHHHhchhhhhHHHhcCc--e----------EEEehHhHHHHHH
Confidence 88888888888877764321 11 111222333333433332211 0 0011233556666
Q ss_pred HHHHcCChHHHHHHHHHHHHHh
Q 000191 1152 SHDTKGRNVSTLKRKTYVAKVK 1173 (1888)
Q Consensus 1152 ~y~~qGdyeEAleyyeKALeL~ 1173 (1888)
.|..+|-+++-+..++.++-+-
T Consensus 1288 ~Yq~rGyFeElIsl~Ea~LGLE 1309 (1666)
T KOG0985|consen 1288 YYQDRGYFEELISLLEAGLGLE 1309 (1666)
T ss_pred HHHhcCcHHHHHHHHHhhhchh
Confidence 7788888888888888777653
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.57 E-value=3.8 Score=49.13 Aligned_cols=149 Identities=16% Similarity=0.061 Sum_probs=100.7
Q ss_pred HHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 000191 904 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT----GDFNQATIYQQKALDINERELGLDHPDTMKS 979 (1888)
Q Consensus 904 l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~l----GdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~a 979 (1888)
...+++..|..++.++-.. ..+.....++.+|..- .+..+|+.+|+++.. .....+
T Consensus 52 ~~~~~~~~a~~~~~~a~~~----------~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~----------~g~~~a 111 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL----------GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA----------DGLAEA 111 (292)
T ss_pred cccccHHHHHHHHHHhhhc----------CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh----------cccHHH
Confidence 3556777777777776541 1115667777777654 457788888885433 233567
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC-----C--HHHHHHHHHHHHHH
Q 000191 980 YGDLAVFYYR----LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG-----N--VHVALRYLHKALKC 1048 (1888)
Q Consensus 980 y~nLA~ly~~----lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG-----~--yeeAle~LekALei 1048 (1888)
.++||.+|.. ..++.+|..+|.+|... | ++.-..+..++|.+|..-. . ...|+.+|.+|...
T Consensus 112 ~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-----g--~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~ 184 (292)
T COG0790 112 LFNLGLMYANGRGVPLDLVKALKYYEKAAKL-----G--NVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL 184 (292)
T ss_pred HHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-----C--ChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh
Confidence 7889999987 45899999999999874 2 3332455677888887642 2 22677777776654
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHH
Q 000191 1049 NQRLLGPDHIQTAASYHAIAIALSL----MEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1049 ~ek~~G~d~~~tA~al~nLA~ay~~----lGdydeAle~lqkALe 1089 (1888)
. ...+..+||.+|.. ..++.+|..+|++|.+
T Consensus 185 ~----------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~ 219 (292)
T COG0790 185 G----------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAE 219 (292)
T ss_pred c----------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 2 34567778888764 3488999999998874
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.23 Score=39.61 Aligned_cols=31 Identities=32% Similarity=0.611 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 000191 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDIN 965 (1888)
Q Consensus 935 A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~ 965 (1888)
+.+++.+|.+|+.+|++++|+.++++++.+.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 4678999999999999999999999999873
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway | Back alignment and domain information |
|---|
Probab=92.38 E-value=8.2 Score=55.62 Aligned_cols=157 Identities=20% Similarity=0.080 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcC----C----------------
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG----D---------------- 950 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lG----d---------------- 950 (1888)
..++..-.+|..++..|++.+|+..|.+|+..++.. .|+-+.|.|+-.++.+...++ +
T Consensus 240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~--~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~ 317 (1185)
T PF08626_consen 240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS--NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSS 317 (1185)
T ss_pred hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc--CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCc
Confidence 346777778999999999999999999999998875 677788888777765443221 1
Q ss_pred ------------------------------------HHHHHHHHHHHHHHHHHhcC---CCChhh--HHHHHHHHHHHHH
Q 000191 951 ------------------------------------FNQATIYQQKALDINERELG---LDHPDT--MKSYGDLAVFYYR 989 (1888)
Q Consensus 951 ------------------------------------yeeAl~~~eKAL~I~Er~lG---~Dhp~t--a~ay~nLA~ly~~ 989 (1888)
...-...+.+++.+|.+... ...|.. ..+...++.++..
T Consensus 318 ~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~ 397 (1185)
T PF08626_consen 318 TSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVA 397 (1185)
T ss_pred cCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHH
Confidence 11122356667776666531 112332 3556677777777
Q ss_pred cC--------------------CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 990 LQ--------------------HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 990 lG--------------------dyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
.. .-.++..++.+|+.+.... -...+.+.+|..+|.+|..+|-..++.-+++.++-.+
T Consensus 398 ~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~--l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~ 475 (1185)
T PF08626_consen 398 QHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKD--LSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQL 475 (1185)
T ss_pred hhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhh--CCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence 77 7788888999998876432 2356678899999999999999999888888888776
Q ss_pred HH
Q 000191 1050 QR 1051 (1888)
Q Consensus 1050 ek 1051 (1888)
..
T Consensus 476 ~~ 477 (1185)
T PF08626_consen 476 VP 477 (1185)
T ss_pred cc
Confidence 43
|
To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways []. |
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=92.05 E-value=11 Score=44.56 Aligned_cols=186 Identities=14% Similarity=0.128 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 895 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH-TGDFNQATIYQQKALDINERELGLDH 973 (1888)
Q Consensus 895 ~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~-lGdyeeAl~~~eKAL~I~Er~lG~Dh 973 (1888)
.+..+|+.+.+.|+|++++.+..+++... ......=.+.|+.+|-. .|..-.+...+..... +..+..+
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~-------~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~---~~~~~~~ 72 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMN-------PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ---KEENKGN 72 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTS-------S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHTTTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccC-------CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh---hhcccch
Confidence 46678899999999999999999988761 11122334445555422 1222222222211111 1111111
Q ss_pred hhhHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhcCCC--Chh-HHHHHHHHHHHHHH-----CC-----CHHHHH
Q 000191 974 PDTMKSYGDLAVFYYRLQHT-ELALKYVKRALYLLHLTCGPS--HPN-TAATYINVAMMEEG-----LG-----NVHVAL 1039 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~lGdy-eeALey~~kALeL~~ki~G~d--hP~-~a~a~~NLA~iy~~-----lG-----~yeeAl 1039 (1888)
... +..+-....+. ++=..++..++.+....+-+. .+. .+..+-..|..|.- .| -.+.|.
T Consensus 73 ~~~------~~~i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~ 146 (236)
T PF00244_consen 73 EKQ------VKLIKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKAL 146 (236)
T ss_dssp HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred hHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHH
Confidence 111 11111111111 222344455555554432221 122 12222223443331 11 136899
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHhcC
Q 000191 1040 RYLHKALKCNQRLLGPDHIQTAASYHAIAIALS-LMEAYPLSVQHEQTTLQILRAKLG 1096 (1888)
Q Consensus 1040 e~LekALei~ek~~G~d~~~tA~al~nLA~ay~-~lGdydeAle~lqkALeI~kk~LG 1096 (1888)
..|++|+.+....+.+.+|.......|.+..|+ .+|+.++|++..++|++-....++
T Consensus 147 ~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~ 204 (236)
T PF00244_consen 147 EAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELD 204 (236)
T ss_dssp HHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGG
T ss_pred HhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhc
Confidence 999999999999889999998888888887775 489999999999999988776554
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.03 E-value=10 Score=50.21 Aligned_cols=150 Identities=18% Similarity=0.148 Sum_probs=102.0
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 000191 908 KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT-----GDFNQATIYQQKALDINERELGLDHPDTMKSYGD 982 (1888)
Q Consensus 908 d~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~l-----GdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~n 982 (1888)
....|..+++.+... ....+...+|.+|+.- .|.+.|+.+++.|..-+.+.. +.....+++.
T Consensus 227 ~~~~a~~~~~~~a~~----------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a---~~~~~~a~~~ 293 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL----------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA---TKGLPPAQYG 293 (552)
T ss_pred hhhHHHHHHHHHHhh----------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH---hhcCCccccH
Confidence 456677778777654 1234566677777654 689999999999987322110 1113346788
Q ss_pred HHHHHHHcC-----CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHhcC
Q 000191 983 LAVFYYRLQ-----HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG---NVHVALRYLHKALKCNQRLLG 1054 (1888)
Q Consensus 983 LA~ly~~lG-----dyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG---~yeeAle~LekALei~ek~~G 1054 (1888)
||.+|.... +++.|+.+|.+|-.+ .+| .+.+.+|.+|..-. ++..|..||..|...-
T Consensus 294 lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-------g~~---~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G----- 358 (552)
T KOG1550|consen 294 LGRLYLQGLGVEKIDYEKALKLYTKAAEL-------GNP---DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG----- 358 (552)
T ss_pred HHHHHhcCCCCccccHHHHHHHHHHHHhc-------CCc---hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC-----
Confidence 999998854 678899999888764 233 34566888887654 5678999998887541
Q ss_pred CCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Q 000191 1055 PDHIQTAASYHAIAIALSL----MEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1055 ~d~~~tA~al~nLA~ay~~----lGdydeAle~lqkALeI 1090 (1888)
...+++++|.+|.. .-+...|..++++|.+.
T Consensus 359 -----~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 359 -----HILAIYRLALCYELGLGVERNLELAFAYYKKAAEK 393 (552)
T ss_pred -----ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc
Confidence 23466777877764 24778899999887753
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.3 Score=39.00 Aligned_cols=32 Identities=6% Similarity=0.063 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000191 1143 SDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1143 aelL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
++++..+|.+|..+|++++|+.+|++++++..
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 35789999999999999999999999999865
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.37 Score=41.52 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 000191 936 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 985 (1888)
Q Consensus 936 ~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ 985 (1888)
.++..||.+|..+|++++|+..|++++.. +|+...++..||.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 46889999999999999999999999997 4555566666654
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.62 E-value=4.7 Score=53.36 Aligned_cols=120 Identities=21% Similarity=0.161 Sum_probs=86.2
Q ss_pred cCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 000191 906 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG-----DFNQATIYQQKALDINERELGLDHPDTMKSY 980 (1888)
Q Consensus 906 qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lG-----dyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay 980 (1888)
..+.+.|+.+|+.|...+.... +.....+.+.||.+|.+.. ++..|+.+|.+|-.. ....+.
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a---~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~----------g~~~a~ 328 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAA---TKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL----------GNPDAQ 328 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHH---hhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc----------CCchHH
Confidence 3589999999999987321110 1112347888999998854 678899999888764 223567
Q ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Q 000191 981 GDLAVFYYRLQ---HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 981 ~nLA~ly~~lG---dyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~----lG~yeeAle~LekALei 1048 (1888)
+.||.+|.... ++..|.+||..|... .| ..+++++|.||.. ..+...|..||.+|.+.
T Consensus 329 ~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-------G~---~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 329 YLLGVLYETGTKERDYRRAFEYYSLAAKA-------GH---ILAIYRLALCYELGLGVERNLELAFAYYKKAAEK 393 (552)
T ss_pred HHHHHHHHcCCccccHHHHHHHHHHHHHc-------CC---hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc
Confidence 88898888766 567899999888762 23 3556778888874 34788999999998775
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.15 Score=64.00 Aligned_cols=98 Identities=20% Similarity=0.182 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..+-..|..++..+.|+.|+.+|.+|+++ ++..+..+.+-+.++...++|..|+.-+.+|+++
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~-------- 67 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL-------- 67 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------
Confidence 344555677888899999999999999987 7777888889999999999999999999999986
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
.|..+.+|+.-|.+++.++++.+|+..|+....+
T Consensus 68 dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l 101 (476)
T KOG0376|consen 68 DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKL 101 (476)
T ss_pred CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhc
Confidence 4888999999999999999999999888887664
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.39 Score=38.53 Aligned_cols=31 Identities=39% Similarity=0.573 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 000191 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDIN 965 (1888)
Q Consensus 935 A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~ 965 (1888)
+.+|..+|.+|..+|++++|+.++++++++.
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4678999999999999999999999999985
|
... |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=91.18 E-value=0.42 Score=38.34 Aligned_cols=31 Identities=6% Similarity=-0.005 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000191 1144 DLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1144 elL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
+++..+|.+|..+|++++|+.+|++++++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5789999999999999999999999999875
|
... |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=91.08 E-value=15 Score=49.75 Aligned_cols=119 Identities=22% Similarity=0.126 Sum_probs=82.1
Q ss_pred HHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 000191 904 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 983 (1888)
Q Consensus 904 l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nL 983 (1888)
++.++|.+|+....+.++. ||....+...-|..+.++|++++|..++ +++.. .+.++ -.++--|
T Consensus 20 ld~~qfkkal~~~~kllkk--------~Pn~~~a~vLkaLsl~r~gk~~ea~~~L-e~~~~----~~~~D---~~tLq~l 83 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--------HPNALYAKVLKALSLFRLGKGDEALKLL-EALYG----LKGTD---DLTLQFL 83 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHhcCchhHHHHH-hhhcc----CCCCc---hHHHHHH
Confidence 4567888888887777765 6766667777788999999999999443 44443 13332 3445567
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000191 984 AVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 984 A~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
-.||..++++++|..+|++++.- .|. -..+..+=++|.+.+.|.+-.+ .|+++++
T Consensus 84 ~~~y~d~~~~d~~~~~Ye~~~~~--------~P~-eell~~lFmayvR~~~yk~qQk---aa~~LyK 138 (932)
T KOG2053|consen 84 QNVYRDLGKLDEAVHLYERANQK--------YPS-EELLYHLFMAYVREKSYKKQQK---AALQLYK 138 (932)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhh--------CCc-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 88999999999999999999864 233 3444556667777777764333 4455554
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.05 E-value=0.21 Score=41.11 Aligned_cols=32 Identities=28% Similarity=0.557 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHH
Q 000191 958 QQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELAL 997 (1888)
Q Consensus 958 ~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeAL 997 (1888)
|++||++ +|+...+|++||.+|...|++++|+
T Consensus 2 y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 6788887 6888999999999999999999996
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=90.85 E-value=24 Score=44.56 Aligned_cols=170 Identities=16% Similarity=0.106 Sum_probs=98.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 000191 901 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH---TGDFNQATIYQQKALDINERELGLDHPDTM 977 (1888)
Q Consensus 901 ~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~---lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta 977 (1888)
..|.+..+|+.-+.+.+..-.+ ...+-.....+...+|.++.+ .|+.++|+..+.+++.-. .....
T Consensus 149 lSyRdiqdydamI~Lve~l~~~----p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~-------~~~~~ 217 (374)
T PF13281_consen 149 LSYRDIQDYDAMIKLVETLEAL----PTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD-------ENPDP 217 (374)
T ss_pred HHhhhhhhHHHHHHHHHHhhcc----CccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc-------CCCCh
Confidence 4566667788767666543332 011112234456788888888 899999999888875532 23344
Q ss_pred HHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000191 978 KSYGDLAVFYYRL---------QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 978 ~ay~nLA~ly~~l---------GdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
.+|.-+|.+|..+ ...++|+.+|.++.++- ++ ...-.|++.++...|.-.+...-+++....
T Consensus 218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--------~~-~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~ 288 (374)
T PF13281_consen 218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--------PD-YYSGINAATLLMLAGHDFETSEELRKIGVK 288 (374)
T ss_pred HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--------cc-ccchHHHHHHHHHcCCcccchHHHHHHHHH
Confidence 5667777776543 23566666666666542 21 233456777777777644444333333322
Q ss_pred HHHhcCCC----cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1049 NQRLLGPD----HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1049 ~ek~~G~d----~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
+....|.. ....--.+-.++.++...|++++|.+.+++++..
T Consensus 289 l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 289 LSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 22222211 1111122334577778899999999999988854
|
|
| >KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.81 E-value=6.5 Score=49.34 Aligned_cols=218 Identities=9% Similarity=0.010 Sum_probs=134.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 000191 942 AVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAAT 1021 (1888)
Q Consensus 942 A~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a 1021 (1888)
.+....++...+|-.+..+--.......|.|-.......+.-|.++....++..|...+.+++--+.+ +.+-...+.+
T Consensus 238 ~wml~d~~~v~~~~~~~~~~h~al~~~~g~d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k--~~~~em~~sV 315 (482)
T KOG4322|consen 238 KWMLHDLLEVEENNLNTSYYHKALNSWFGGDYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK--GCNEEMLHSV 315 (482)
T ss_pred HHHHHHhHHHHHhhhhhhHHHHHHHHhhcchHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--chhHHHHHHH
Confidence 33344444444444333222222233456676777788888999999999999999999988765443 3334556778
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHH
Q 000191 1022 YINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLR 1101 (1888)
Q Consensus 1022 ~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~ 1101 (1888)
+..++.++.+-+.--.++.++-.++..+.++ ......+..-..+|..+..+|-.+.|+..+..|+....-..|-++..
T Consensus 316 LL~~ae~~~~g~~a~l~lplaL~~~~~~sey--~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~dra 393 (482)
T KOG4322|consen 316 LLTIAEARESGDTACLNLPLALMFEFKRSEY--SLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRA 393 (482)
T ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHHHHHh--ccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcc
Confidence 8888999888888778888887777776655 22223445556788888999999999999999998765544433221
Q ss_pred HHH---HHHHHH--------HHHH--HHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHH---HHHH
Q 000191 1102 TQD---AAAWLE--------YFES--KAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVS---TLKR 1165 (1888)
Q Consensus 1102 tl~---a~~~La--------~L~q--ka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeE---Aley 1165 (1888)
... +...++ .+.. ...+.++.... .-..|..+.+++++++..|...|+..+ +...
T Consensus 394 ra~fvfanC~lA~a~s~~~e~ld~~~~~L~~A~~~f~---------kL~~he~ildv~yf~A~~yn~lGd~~eRn~~Asl 464 (482)
T KOG4322|consen 394 RAIFVFANCTLAFALSCANESLDGFPRYLDLAQSIFY---------KLGCHEKILDVTYFSAYQYNHLGDSPERNLLASL 464 (482)
T ss_pred eeEEEEEeeeecchhhhhhhhHHhhHHHHHHHHHHHH---------HccchHHHHHHHHHHHHHHHhhcCchHHHHHHHH
Confidence 100 000000 0000 00111111111 123344688899999999999998765 4555
Q ss_pred HHHHHHH
Q 000191 1166 KTYVAKV 1172 (1888)
Q Consensus 1166 yeKALeL 1172 (1888)
|+|+...
T Consensus 465 Frk~~~~ 471 (482)
T KOG4322|consen 465 FRKAWRY 471 (482)
T ss_pred HHHHHHh
Confidence 5555543
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.67 E-value=6.3 Score=48.16 Aligned_cols=226 Identities=10% Similarity=-0.018 Sum_probs=124.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC-Chhh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000191 942 AVVLYHTGDFNQATIYQQKALDINERELGLD-HPDT----MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP 1016 (1888)
Q Consensus 942 A~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D-hp~t----a~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP 1016 (1888)
++......++++++..+...+...+ |.. +... -.+..+|+..|...|++++-..+.......+..+. .+
T Consensus 11 ~~~~~~~~~~~~~~~il~~vl~~~~---~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~---Ka 84 (411)
T KOG1463|consen 11 AQNLVSVNQVEEAINILKSVLNKAQ---GASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVS---KA 84 (411)
T ss_pred HHHhcccchhhhhHHHHHHHhhhhc---cccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh---hH
Confidence 3333444455666666665554311 111 1111 24667899999999999888777777777665532 12
Q ss_pred hHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 000191 1017 NTAATYINVAMME-EGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL 1095 (1888)
Q Consensus 1017 ~~a~a~~NLA~iy-~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~L 1095 (1888)
..+.+...|-.+. ..-+....-+.++.++++-..+- .........-..|..+|...++|.+|+......+.-+++.-
T Consensus 85 kaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~e--kRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlD 162 (411)
T KOG1463|consen 85 KAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKRE--KRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLD 162 (411)
T ss_pred HHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc
Confidence 3333333333322 23334455566666665544322 01111223334678899999999999999988887777654
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHhc
Q 000191 1096 GPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSH-DTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1096 G~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y-~~qGdyeEAleyyeKALeL~d 1174 (1888)
+....-....+.--.++.......+++....++... .+.-..+.+...+....+++ ..-.+|.-|..||-.|.+=++
T Consensus 163 DK~lLvev~llESK~y~~l~Nl~KakasLTsART~A--naiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~ 240 (411)
T KOG1463|consen 163 DKILLVEVHLLESKAYHALRNLPKAKASLTSARTTA--NAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFD 240 (411)
T ss_pred cccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhh--cccccCHHHHHHHHHhccceeecccccchHHHHHHHHHcccc
Confidence 433322223333333444444444444332222111 11112223333445554444 556899999999999999888
Q ss_pred ccc
Q 000191 1175 NFY 1177 (1888)
Q Consensus 1175 Si~ 1177 (1888)
++.
T Consensus 241 s~~ 243 (411)
T KOG1463|consen 241 SLD 243 (411)
T ss_pred ccC
Confidence 877
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.59 E-value=0.27 Score=59.53 Aligned_cols=98 Identities=23% Similarity=0.145 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+....-.|..++..|.++.|++.|..|+.+ +|..+..|...|.++..++....|+.-|..|+.+
T Consensus 114 a~e~k~~A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei-------- 177 (377)
T KOG1308|consen 114 ANDKKVQASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI-------- 177 (377)
T ss_pred HHHHHHHHHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------
Confidence 445555667788899999999999999876 6778888999999999999999999999999987
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
+++++..|-.-+.....+|++++|-.++..|..+
T Consensus 178 n~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 178 NPDSAKGYKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred CcccccccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 5677788888888999999999999999988875
|
|
| >PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] | Back alignment and domain information |
|---|
Probab=90.40 E-value=13 Score=47.49 Aligned_cols=176 Identities=14% Similarity=-0.059 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHHHHH
Q 000191 895 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDF-------NQATIYQQKALDINER 967 (1888)
Q Consensus 895 ~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdy-------eeAl~~~eKAL~I~Er 967 (1888)
.+..+|..++..|+|+-|...|+.+.+-+..- .-....|.++-..|.+++.++.. ++...+++.|+..+.+
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D--kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~ 287 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKND--KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLK 287 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc--hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHh
Confidence 44556788889999999999999888765321 12234566777777777777744 3677788888888877
Q ss_pred hcC---CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh---HHHHHHHHHHHH--HHCCCHHHHH
Q 000191 968 ELG---LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN---TAATYINVAMME--EGLGNVHVAL 1039 (1888)
Q Consensus 968 ~lG---~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~---~a~a~~NLA~iy--~~lG~yeeAl 1039 (1888)
... ........+....+.++...+.+.+|...+-++..... .+... .+..+-.+|.+| .....
T Consensus 288 ~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l----~~~l~~~~~alllE~~a~~~~~~~~~~----- 358 (414)
T PF12739_consen 288 SALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEIL----ESDLRPFGSALLLEQAAYCYASLRSNR----- 358 (414)
T ss_pred hhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH----hhhhhhHhhHHHHHHHHHhhcccccCC-----
Confidence 321 11224556777788888899999888877776665421 01111 334444455555 11100
Q ss_pred HHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 000191 1040 RYLHKALKCNQRLLGPD-HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 1092 (1888)
Q Consensus 1040 e~LekALei~ek~~G~d-~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~k 1092 (1888)
...+.. ....+.-+..-|.-|...|+...|+.+|.+|+.++.
T Consensus 359 -----------~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 359 -----------PSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred -----------CCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 000000 112333333446788899999999999999999886
|
Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ]. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.30 E-value=0.25 Score=40.58 Aligned_cols=32 Identities=31% Similarity=0.404 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHH
Q 000191 916 GTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQAT 955 (1888)
Q Consensus 916 ~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl 955 (1888)
|++|+++ +|..+.+|++||.+|...|++++|+
T Consensus 2 y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 6778776 6888899999999999999999986
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.13 E-value=0.61 Score=40.19 Aligned_cols=41 Identities=22% Similarity=0.172 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 000191 895 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAV 943 (1888)
Q Consensus 895 ~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ 943 (1888)
.++.+|..|...|++++|+..|+++++. +|+...++..||.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 4677899999999999999999999987 4555667777764
|
|
| >KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.07 E-value=8.9 Score=48.19 Aligned_cols=183 Identities=15% Similarity=0.002 Sum_probs=126.2
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000191 928 GPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 1007 (1888)
Q Consensus 928 G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~ 1007 (1888)
|.+-..-....+.-|.++....++.+|..++++++--+.+ +..-......+..++.++..-+..-.++.+.-+++..+
T Consensus 266 g~d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k--~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~ 343 (482)
T KOG4322|consen 266 GGDYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK--GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKR 343 (482)
T ss_pred cchHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 3443444456666899999999999999999988776544 33334455677788888888888889999988888877
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHHHHHHcCChHHHHH
Q 000191 1008 HLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI-----QTAASYHAIAIALSLMEAYPLSVQ 1082 (1888)
Q Consensus 1008 ~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~-----~tA~al~nLA~ay~~lGdydeAle 1082 (1888)
... .-+ -..+.+-.++|..+..+|..+.|+..++.|+....-..|-+.. ..+.++..-+.-+ ...+++.+..
T Consensus 344 sey-~ld-yl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~ 420 (482)
T KOG4322|consen 344 SEY-SLD-YLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPR 420 (482)
T ss_pred HHh-ccc-hhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHH
Confidence 653 222 2345556678999999999999999999999876443222211 1223332222222 5568889999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 000191 1083 HEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAF 1117 (1888)
Q Consensus 1083 ~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~ 1117 (1888)
++++|-+++.+. ..|....++...+++.+...+
T Consensus 421 ~L~~A~~~f~kL--~~he~ildv~yf~A~~yn~lG 453 (482)
T KOG4322|consen 421 YLDLAQSIFYKL--GCHEKILDVTYFSAYQYNHLG 453 (482)
T ss_pred HHHHHHHHHHHc--cchHHHHHHHHHHHHHHHhhc
Confidence 999999999875 557777777766666654433
|
|
| >PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway | Back alignment and domain information |
|---|
Probab=89.93 E-value=10 Score=54.80 Aligned_cols=229 Identities=14% Similarity=0.028 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC----------------------
Q 000191 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH---------------------- 992 (1888)
Q Consensus 935 A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGd---------------------- 992 (1888)
++..-.+|.+|...|.+.+|+.+|..|+.+++. ..|+-..+.++-.++.+....+.
T Consensus 242 gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~--~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~ 319 (1185)
T PF08626_consen 242 GRLQKVLGDLYLLAGRWPDALKEYTEAIEILKS--SNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTS 319 (1185)
T ss_pred hhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhh--cCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccC
Confidence 455667899999999999999999999999877 45776666666665544322110
Q ss_pred ----------------------------------HHHHHHHHHHHHHHHHHhc---CCCChh--HHHHHHHHHHHHHHCC
Q 000191 993 ----------------------------------TELALKYVKRALYLLHLTC---GPSHPN--TAATYINVAMMEEGLG 1033 (1888)
Q Consensus 993 ----------------------------------yeeALey~~kALeL~~ki~---G~dhP~--~a~a~~NLA~iy~~lG 1033 (1888)
...=...+.+++.++.+.. ....|. ...+...++.++..+.
T Consensus 320 ~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~ 399 (1185)
T PF08626_consen 320 SSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQH 399 (1185)
T ss_pred ccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhh
Confidence 1111234556666555542 122333 2456666777777776
Q ss_pred --------------------CHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000191 1034 --------------------NVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 1093 (1888)
Q Consensus 1034 --------------------~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk 1093 (1888)
.-.++..++.+|+.+....+ .......+|..+|.+|..+|-.+++.-++++++..+..
T Consensus 400 ~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l--~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~~~ 477 (1185)
T PF08626_consen 400 LSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL--SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQLVP 477 (1185)
T ss_pred cccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC--CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcc
Confidence 67888999999988764432 34556789999999999999999998888888877654
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhc--CCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000191 1094 KLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASK--GHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 1171 (1888)
Q Consensus 1094 ~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~--~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALe 1171 (1888)
.+...+......+..+... +...... ............ .......++..+-.+..+.||+.-+++|.-..|+
T Consensus 478 ~l~~~~~s~~~lL~~~~~~----Ygi~~~~--~~~~~~~~~~~~~~W~~LQi~vL~~~I~~ae~l~D~~~~~~~~~~LL~ 551 (1185)
T PF08626_consen 478 GLIHWHQSYRSLLEELCKG----YGISLDP--ESSSEDSSKGSQSNWPSLQIDVLKECINIAEALGDFAGVLRFSSLLLR 551 (1185)
T ss_pred ccCCcchHHHHHHHHHhcc----CcccCCc--cccccccccccccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3311121111111111000 0000000 000000000000 1112345666666677889999999988877666
Q ss_pred Hh
Q 000191 1172 VK 1173 (1888)
Q Consensus 1172 L~ 1173 (1888)
-.
T Consensus 552 ~~ 553 (1185)
T PF08626_consen 552 TY 553 (1185)
T ss_pred HH
Confidence 43
|
To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways []. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=89.92 E-value=1.7 Score=48.95 Aligned_cols=79 Identities=15% Similarity=0.124 Sum_probs=49.8
Q ss_pred ChhhHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC----CHHHHHHHHHHH
Q 000191 973 HPDTMKSYGDLAVFYYRLQHT---ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG----NVHVALRYLHKA 1045 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdy---eeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG----~yeeAle~LekA 1045 (1888)
+|..+..+++-|..+..+.++ .++.++++.|+.-++..+.- +|....+++++|.+|..++ +..+|..+|++|
T Consensus 21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I-~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI-NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 455677777777777766544 44666666666555443221 4777888999999998665 445677777777
Q ss_pred HHHHHHh
Q 000191 1046 LKCNQRL 1052 (1888)
Q Consensus 1046 Lei~ek~ 1052 (1888)
...+++.
T Consensus 100 ~~~FqkA 106 (186)
T PF06552_consen 100 TEYFQKA 106 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.80 E-value=18 Score=47.41 Aligned_cols=105 Identities=13% Similarity=0.097 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
-..|++.|...+...+|..++++|...+..+.. +..+...+...++|+.+|..+.+.+.|.+++++|-+.
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~--D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~-------- 423 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIIS--DNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV-------- 423 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccc--hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--------
Confidence 456788888888999999999999998876432 2345566888999999999999999999999988664
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 1007 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~ 1007 (1888)
++........+-......+.-++|+.+........
T Consensus 424 d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 424 DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 22233333334445556688888888877766554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.90 E-value=16 Score=47.27 Aligned_cols=174 Identities=19% Similarity=0.162 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHH---HHHHHHHHHHhc
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIY---QQKALDINEREL 969 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~---~eKAL~I~Er~l 969 (1888)
+..+.+.+..+...|+..+|-.+-.++..+++... .........+|+..-+++++..- +++...++.+.+
T Consensus 286 s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I-------~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll 358 (656)
T KOG1914|consen 286 SMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAI-------EGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLL 358 (656)
T ss_pred HHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHH
Confidence 34455556677777877766666666666555432 11222233445555555555544 555555555555
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHH
Q 000191 970 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMM-EEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~i-y~~lG~yeeAle~LekALei 1048 (1888)
+..+.+...+|+++=.+-.+..-.+.|...|.+|.+.- .+..|- +..-|.+ |...++..-|.+.|+-.|+.
T Consensus 359 ~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~---r~~hhV-----fVa~A~mEy~cskD~~~AfrIFeLGLkk 430 (656)
T KOG1914|consen 359 KIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDK---RTRHHV-----FVAAALMEYYCSKDKETAFRIFELGLKK 430 (656)
T ss_pred hhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhcc---CCcchh-----hHHHHHHHHHhcCChhHHHHHHHHHHHh
Confidence 55555555666666666666677888888888887642 122232 2223333 66789999999999988876
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000191 1049 NQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1049 ~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALe 1089 (1888)
+ .+.+.....| ...+..+++-..|...|++++.
T Consensus 431 f-----~d~p~yv~~Y---ldfL~~lNdd~N~R~LFEr~l~ 463 (656)
T KOG1914|consen 431 F-----GDSPEYVLKY---LDFLSHLNDDNNARALFERVLT 463 (656)
T ss_pred c-----CCChHHHHHH---HHHHHHhCcchhHHHHHHHHHh
Confidence 5 4556665555 4566778888888888887764
|
|
| >cd01807 GDX_N ubiquitin-like domain of GDX | Back alignment and domain information |
|---|
Probab=88.80 E-value=0.62 Score=44.78 Aligned_cols=70 Identities=17% Similarity=0.222 Sum_probs=54.2
Q ss_pred EEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEeccC
Q 000191 26 LDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTEED 98 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVeep 98 (1888)
++|+|+++.+....+..-.+++|.||++.|..... +.-..+.|.+ +|..|+|...+++.. +++|.||.-|
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~g-i~~~~q~L~~--~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLN-VPEEQQRLLF--KGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC-CCHHHeEEEE--CCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 47999999876655533355999999999998654 5667788875 999999988777753 6999988644
|
GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.66 E-value=20 Score=46.94 Aligned_cols=124 Identities=16% Similarity=0.107 Sum_probs=72.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH------HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 939 SLLAVVLYHTGDFNQATIYQQK------ALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 1012 (1888)
Q Consensus 939 ~~LA~ly~~lGdyeeAl~~~eK------AL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G 1012 (1888)
..+|.++..+|.|.+|..+|.+ |++++.. .-+..++.-|...|.-++-..+.++-.+-...
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTD----------lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~--- 702 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTD----------LRMFDYAQEFLGSGDPKEKKMLIRKRADWARN--- 702 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHH----------HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhh---
Confidence 3578888899999999998865 3444321 22345666666667666655555443332222
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHH------HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000191 1013 PSHPNTAATYINVAMMEEGLGNVHVALRY------LHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 1085 (1888)
Q Consensus 1013 ~dhP~~a~a~~NLA~iy~~lG~yeeAle~------LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lq 1085 (1888)
-+.|.. .|.++...|+.++|+.. .+-++++.+++. ......+..+|..+..+..+.-|.+.|+
T Consensus 703 ~kePka------AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld----~~ere~l~~~a~ylk~l~~~gLAaeIF~ 771 (1081)
T KOG1538|consen 703 IKEPKA------AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD----KAEREPLLLCATYLKKLDSPGLAAEIFL 771 (1081)
T ss_pred cCCcHH------HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc----hhhhhHHHHHHHHHhhccccchHHHHHH
Confidence 234544 37888889999988764 455666655541 1222344445555555555555544443
|
|
| >cd01802 AN1_N ubiquitin-like domain of AN1 | Back alignment and domain information |
|---|
Probab=88.39 E-value=0.82 Score=47.19 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=57.2
Q ss_pred CeEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000191 23 PVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 23 ~~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
+..++|+|++..+....+..-++++|.+|++.|..... ..-..+.|.+ .|..|+|...|++.. +++|.|+-
T Consensus 25 ~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~g-ip~~~QrLi~--~Gk~L~D~~tL~dy~I~~~stL~l~~ 98 (103)
T cd01802 25 YDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEG-IPVAQQHLIW--NNMELEDEYCLNDYNISEGCTLKLVL 98 (103)
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhC-CChHHEEEEE--CCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 45789999999887766555566999999999998654 6777788886 999999988887754 78998873
|
AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown. |
| >PTZ00044 ubiquitin; Provisional | Back alignment and domain information |
|---|
Probab=88.37 E-value=0.68 Score=44.51 Aligned_cols=68 Identities=10% Similarity=0.193 Sum_probs=54.8
Q ss_pred EEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000191 26 LDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
++|.|+++++....+..-.+++|.+|++.|..... ++-.+..|.+ +|..|+|...+++.. +++|.|+-
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~g-i~~~~q~L~~--~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEG-IDVKQIRLIY--SGKQMSDDLKLSDYKVVPGSTIHMVL 71 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC-CCHHHeEEEE--CCEEccCCCcHHHcCCCCCCEEEEEE
Confidence 47899999887666544466999999999999775 6777888885 999999988888764 68888864
|
|
| >KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.33 E-value=8.1 Score=48.46 Aligned_cols=114 Identities=17% Similarity=0.044 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh----c-CCCChhhHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHH
Q 000191 937 AYSLLAVVLYHTGDFNQATIYQQKALDINERE----L-GLDHPDTMKSYGDLAVFYYRLQHT---ELALKYVKRALYLLH 1008 (1888)
Q Consensus 937 ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~----l-G~Dhp~ta~ay~nLA~ly~~lGdy---eeALey~~kALeL~~ 1008 (1888)
.|+.-|++.+....|++|+..+..|=+.+-.+ + +.|+ .+..-..+-+||+.+.+. ..|..-+.+|..-+.
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDN--yallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~ 242 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDN--YALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFE 242 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcc--hhhhhcchhheehhhcccccCChHHHHHHHHHHhhh
Confidence 34444555555555666665555554333221 0 1222 233344567888888764 567777777777776
Q ss_pred HhcCCCC-----------hhH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 1009 LTCGPSH-----------PNT---AATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 1009 ki~G~dh-----------P~~---a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
..||.++ |.. ...+.--|.+.+.+|+-++|.++|+.|...+.++
T Consensus 243 ~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~el 300 (568)
T KOG2561|consen 243 RSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLEL 300 (568)
T ss_pred hhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHe
Confidence 6666553 333 3445667999999999999999999998877665
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=88.03 E-value=3.3 Score=50.05 Aligned_cols=128 Identities=17% Similarity=0.146 Sum_probs=82.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 000191 901 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH-TGDFNQATIYQQKALDINERELGLDHPDTMKS 979 (1888)
Q Consensus 901 ~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~-lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~a 979 (1888)
+.....+..+.|..+|.+|+.. ......+|...|.+-++ .++.+.|...|+.++..+- .+....
T Consensus 9 ~~~~r~~g~~~aR~vF~~a~~~--------~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~-----~~~~~~-- 73 (280)
T PF05843_consen 9 RFMRRTEGIEAARKVFKRARKD--------KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP-----SDPDFW-- 73 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC--------CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT-----T-HHHH--
T ss_pred HHHHHhCChHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-----CCHHHH--
Confidence 4445555688999999998631 22334577888988666 5666679999999998752 233443
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 980 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 980 y~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
.....++...++.+.|..+|++++... .. ....-.+|......-...|+.+....+.+++.+.+
T Consensus 74 -~~Y~~~l~~~~d~~~aR~lfer~i~~l----~~-~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 74 -LEYLDFLIKLNDINNARALFERAISSL----PK-EKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp -HHHHHHHHHTT-HHHHHHHHHHHCCTS----SC-HHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHhCcHHHHHHHHHHHHHhc----Cc-hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 344467788999999999999998641 11 11123445555566667788877777777766654
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.84 E-value=9.9 Score=46.02 Aligned_cols=131 Identities=18% Similarity=0.115 Sum_probs=86.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH---------------HH
Q 000191 940 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKR---------------AL 1004 (1888)
Q Consensus 940 ~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~k---------------AL 1004 (1888)
.-+.-....|++.+|...+..++... +....+...||.+|...|+.+.|...+.. .+
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~--------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i 210 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAA--------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQI 210 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhC--------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34556678899999999999999873 33466778899999999999888766543 23
Q ss_pred HHHHHhcCC-----------CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 000191 1005 YLLHLTCGP-----------SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL 1073 (1888)
Q Consensus 1005 eL~~ki~G~-----------dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~ 1073 (1888)
++....-.. .+|+...+.+.+|..|...|++++|++.+-..++. ..|..... ..-.|-.++..
T Consensus 211 ~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~---d~~~~d~~---~Rk~lle~f~~ 284 (304)
T COG3118 211 ELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR---DRGFEDGE---ARKTLLELFEA 284 (304)
T ss_pred HHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---cccccCcH---HHHHHHHHHHh
Confidence 443332111 14555667788999999999999999987655544 22322222 23334455566
Q ss_pred cCChHHHHHHH
Q 000191 1074 MEAYPLSVQHE 1084 (1888)
Q Consensus 1074 lGdydeAle~l 1084 (1888)
.|.-+.+...|
T Consensus 285 ~g~~Dp~~~~~ 295 (304)
T COG3118 285 FGPADPLVLAY 295 (304)
T ss_pred cCCCCHHHHHH
Confidence 66444443333
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=87.82 E-value=85 Score=43.14 Aligned_cols=163 Identities=19% Similarity=0.151 Sum_probs=92.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 000191 899 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK 978 (1888)
Q Consensus 899 lG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ 978 (1888)
.|..++++|+.++|..++ +++... +.. .-..+..|-.+|..+|++++|..+|++++..+ |. -.
T Consensus 49 kaLsl~r~gk~~ea~~~L-e~~~~~----~~~---D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--------P~-ee 111 (932)
T KOG2053|consen 49 KALSLFRLGKGDEALKLL-EALYGL----KGT---DDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--------PS-EE 111 (932)
T ss_pred HHHHHHHhcCchhHHHHH-hhhccC----CCC---chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--------Cc-HH
Confidence 367788999999999544 444331 222 23567788899999999999999999998752 33 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHH--HHHHHHHHHHHhcCCC
Q 000191 979 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALR--YLHKALKCNQRLLGPD 1056 (1888)
Q Consensus 979 ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle--~LekALei~ek~~G~d 1056 (1888)
.++.+=.+|.+-+.|.+-.+ -|+++++. ++. .+.. .|.-+..+++.+...+++.. ++--|-+.+.+.+...
T Consensus 112 ll~~lFmayvR~~~yk~qQk---aa~~LyK~-~pk-~~yy--fWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~ 184 (932)
T KOG2053|consen 112 LLYHLFMAYVREKSYKKQQK---AALQLYKN-FPK-RAYY--FWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKK 184 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHh-CCc-ccch--HHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccC
Confidence 45555566667666654322 24444443 232 2322 24445666666655555444 1111222222222111
Q ss_pred -cHH-HHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000191 1057 -HIQ-TAASYHAIAIALSLMEAYPLSVQHEQT 1086 (1888)
Q Consensus 1057 -~~~-tA~al~nLA~ay~~lGdydeAle~lqk 1086 (1888)
... .+... ..-.++..+|++++|+..+..
T Consensus 185 gk~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~ 215 (932)
T KOG2053|consen 185 GKIESEAEII-LYLLILELQGKYQEALEFLAI 215 (932)
T ss_pred CccchHHHHH-HHHHHHHhcccHHHHHHHHHH
Confidence 111 22221 223466678999999888753
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.50 E-value=39 Score=44.55 Aligned_cols=106 Identities=8% Similarity=-0.013 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 000191 978 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 1057 (1888)
Q Consensus 978 ~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~ 1057 (1888)
..+.|-|.-+++..+|..|+++|+..+..... ...+...+....+++.+|..+.+.+.|.+++++|-+.-.+ .
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~--D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~-----~ 427 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIIS--DNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ-----S 427 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccc--hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-----c
Confidence 44567788889999999999999998875421 1223456788899999999999999999999999776322 2
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000191 1058 IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 1093 (1888)
Q Consensus 1058 ~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk 1093 (1888)
+ .+...+-.+....|.-.+|+........++..
T Consensus 428 ~---l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 428 P---LCQLLMLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred H---HHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 2 22333455566678889999988877766544
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.43 E-value=0.77 Score=57.98 Aligned_cols=94 Identities=21% Similarity=0.203 Sum_probs=79.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 000191 940 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTA 1019 (1888)
Q Consensus 940 ~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a 1019 (1888)
.-|.-++.-++|+.|+.+|-|||++ +++.+..+.+-|..+...++|..|+.-+.+|+++ .|..+
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~~ 72 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTYI 72 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchhh
Confidence 3455666778999999999999997 6788888899999999999999999999999985 47888
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 1020 ATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1020 ~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
.+|..-|.++..++++.+|+..|+....+.
T Consensus 73 K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~ 102 (476)
T KOG0376|consen 73 KAYVRRGTAVMALGEFKKALLDLEKVKKLA 102 (476)
T ss_pred heeeeccHHHHhHHHHHHHHHHHHHhhhcC
Confidence 888888888888888888888888776654
|
|
| >KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.28 E-value=2.7 Score=51.56 Aligned_cols=67 Identities=18% Similarity=0.146 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHH
Q 000191 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATI 956 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~ 956 (1888)
...+..++..|+.++.+++|+.|...|.+|..++..+||..|.+...+++.+|..++.+++++.++-
T Consensus 38 ~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL 104 (400)
T KOG4563|consen 38 EKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVL 104 (400)
T ss_pred HHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3457789999999999999999999999999999999999999999999999999999988877654
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=87.09 E-value=25 Score=44.20 Aligned_cols=148 Identities=18% Similarity=0.075 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC---------------------CChhHHHHHHHHHHHHHhcCCH
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP---------------------YHRMTAGAYSLLAVVLYHTGDF 951 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~---------------------dhpe~A~ay~~LA~ly~~lGdy 951 (1888)
...|++++.++..+|+...|.+++++||-.++..+.. .+.....++......+.+.|-+
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~ 119 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCW 119 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcH
Confidence 5678899999999999999999999999876643211 2334455667777788888999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 000191 952 NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 1031 (1888)
Q Consensus 952 eeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~ 1031 (1888)
..|+++.+-.+.+ .+++ +-..+...+=.+..+.++|+--+++++..........-..-|. ..+.+|.++..
T Consensus 120 rTAlE~~KlLlsL-----dp~~-DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn---~a~S~aLA~~~ 190 (360)
T PF04910_consen 120 RTALEWCKLLLSL-----DPDE-DPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN---FAFSIALAYFR 190 (360)
T ss_pred HHHHHHHHHHHhc-----CCCC-CcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc---HHHHHHHHHHH
Confidence 9888888766665 2220 2334445555666677888777777665544211000001233 34557888888
Q ss_pred CCCH---------------HHHHHHHHHHHHHH
Q 000191 1032 LGNV---------------HVALRYLHKALKCN 1049 (1888)
Q Consensus 1032 lG~y---------------eeAle~LekALei~ 1049 (1888)
+++- +.|...+++|+..+
T Consensus 191 l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 191 LEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred hcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 8887 88999999998765
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=87.02 E-value=7.6 Score=44.74 Aligned_cols=67 Identities=21% Similarity=0.204 Sum_probs=51.5
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHH
Q 000191 970 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRY 1041 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~ 1041 (1888)
|....+++.....||.+|. ..+.++|+.+|.+++++... ++.-...++..||.+|..+|+++.|--|
T Consensus 134 ~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~----~~~~n~eil~sLas~~~~~~~~e~AYiw 200 (203)
T PF11207_consen 134 GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP----DDNFNPEILKSLASIYQKLKNYEQAYIW 200 (203)
T ss_pred CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC----CCCCCHHHHHHHHHHHHHhcchhhhhhh
Confidence 4445567788888998877 77899999999999998643 3222345677799999999999988544
|
|
| >cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein | Back alignment and domain information |
|---|
Probab=86.85 E-value=0.9 Score=43.15 Aligned_cols=66 Identities=8% Similarity=0.141 Sum_probs=52.7
Q ss_pred EEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc--c-CceeEEec
Q 000191 28 ITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL--K-PCVLSLTE 96 (1888)
Q Consensus 28 itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l--k-~~~L~lVe 96 (1888)
|.|+++.+..+.+..-+.++|.+|++.|.... .|.-+.+.|.+ +|..|+|...+++. + |++|+||.
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-gi~~~~q~Li~--~G~~L~d~~~l~~~~i~~~stl~l~~ 69 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQ-GVPPDQLRVIF--AGKELRNTTTIQECDLGQQSILHAVR 69 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHH-CCCHHHeEEEE--CCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 57889988776664446699999999999865 47888888875 99999998777764 3 69999874
|
parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain. |
| >KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown] | Back alignment and domain information |
|---|
Probab=86.79 E-value=11 Score=42.59 Aligned_cols=156 Identities=14% Similarity=0.137 Sum_probs=94.0
Q ss_pred CChHHHHH-HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 000191 907 GKLEDAVT-YGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH-----TGDFNQATIYQQKALDINERELGLDHPDTMKSY 980 (1888)
Q Consensus 907 Gd~dEAie-~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~-----lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay 980 (1888)
|+|-++++ -|++|..++...+... ..+...+.+|..+.. .+++..|++++..|... ....+.
T Consensus 41 gdYlEgi~knF~~A~kv~K~nCden--~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----------n~~~aC 108 (248)
T KOG4014|consen 41 GDYLEGIQKNFQAAVKVFKKNCDEN--SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----------NIPQAC 108 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc--CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc----------CCHHHH
Confidence 55555543 4666666666655332 233455566654432 35688888888888762 345677
Q ss_pred HHHHHHHHHcC-----C--HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----------------------
Q 000191 981 GDLAVFYYRLQ-----H--TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG---------------------- 1031 (1888)
Q Consensus 981 ~nLA~ly~~lG-----d--yeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~---------------------- 1031 (1888)
.++|+++..-. + ..+|++|+.+|-++- ...+..+|..+|..
T Consensus 109 ~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~----------~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~ 178 (248)
T KOG4014|consen 109 RYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE----------DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELG 178 (248)
T ss_pred hhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC----------CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhh
Confidence 88888887542 2 578888888887641 12233344444432
Q ss_pred --CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHHh
Q 000191 1032 --LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLM----EAYPLSVQHEQTTLQILRAK 1094 (1888)
Q Consensus 1032 --lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~l----GdydeAle~lqkALeI~kk~ 1094 (1888)
..+.+.|+++..+|.++ ++ ..+..|+.+.|..- .+-++|..+-.+|.+|.+..
T Consensus 179 ~~~kDMdka~qfa~kACel-------~~---~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~ 237 (248)
T KOG4014|consen 179 SLSKDMDKALQFAIKACEL-------DI---PQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEEL 237 (248)
T ss_pred hhhHhHHHHHHHHHHHHhc-------CC---hHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHH
Confidence 34556666666665554 22 23455667777542 46678888888888887654
|
|
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=86.44 E-value=7.2 Score=46.28 Aligned_cols=91 Identities=18% Similarity=0.026 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Q 000191 909 LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYY 988 (1888)
Q Consensus 909 ~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~ 988 (1888)
-...++++.+|+..+... ........+...||..|+..|++++|+.+++.+...+++- .-..-....+..|..|+.
T Consensus 154 s~~iI~lL~~A~~~f~~~--~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~Ca~ 229 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKY--GQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLECAK 229 (247)
T ss_pred HHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHH
Confidence 345677888888877664 2345566777899999999999999999999998877652 223344577788999999
Q ss_pred HcCCHHHHHHHHHHH
Q 000191 989 RLQHTELALKYVKRA 1003 (1888)
Q Consensus 989 ~lGdyeeALey~~kA 1003 (1888)
..|+.+..+.+.-+.
T Consensus 230 ~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 230 RLGDVEDYLTTSLEL 244 (247)
T ss_pred HhCCHHHHHHHHHHH
Confidence 999998877765443
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.38 E-value=64 Score=44.61 Aligned_cols=165 Identities=16% Similarity=0.091 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER------ 967 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er------ 967 (1888)
..+-.+|...++.|...+|++.|-+| ++| ..|...-.+..+.|.|++-+.|++.|-.-.+.
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika----------dDp---s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~e 1171 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA----------DDP---SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSE 1171 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc----------CCc---HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHH
Confidence 34556678888999999999888765 233 35666667777788888877777665433211
Q ss_pred -----------------hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 000191 968 -----------------ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE 1030 (1888)
Q Consensus 968 -----------------~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~ 1030 (1888)
+.|+++.+ ....|.-++..+.|+.|.-+|.. ..-+..||..+.
T Consensus 1172 Li~AyAkt~rl~elE~fi~gpN~A~----i~~vGdrcf~~~~y~aAkl~y~~----------------vSN~a~La~TLV 1231 (1666)
T KOG0985|consen 1172 LIFAYAKTNRLTELEEFIAGPNVAN----IQQVGDRCFEEKMYEAAKLLYSN----------------VSNFAKLASTLV 1231 (1666)
T ss_pred HHHHHHHhchHHHHHHHhcCCCchh----HHHHhHHHhhhhhhHHHHHHHHH----------------hhhHHHHHHHHH
Confidence 11222211 12344455555555555433322 233455777788
Q ss_pred HCCCHHHHHHHHHHHHHH--HH---------------HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000191 1031 GLGNVHVALRYLHKALKC--NQ---------------RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1031 ~lG~yeeAle~LekALei--~e---------------k~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
.+|+|+.|.+..++|-.. ++ ++.|-+-...+.-+-.|-..|...|-|++-+..++.++-+-
T Consensus 1232 ~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE 1309 (1666)
T KOG0985|consen 1232 YLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE 1309 (1666)
T ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh
Confidence 888888888877766432 11 12233333344455566777778888877777776665443
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.28 E-value=4.5 Score=55.49 Aligned_cols=25 Identities=4% Similarity=0.006 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHH
Q 000191 1142 VSDLLDYINPSHDTKGRNVSTLKRK 1166 (1888)
Q Consensus 1142 vaelL~~Lg~~y~~qGdyeEAleyy 1166 (1888)
+...+...+.++..+|....|+.|+
T Consensus 664 l~~~~~~yanllasQG~~~~A~~~l 688 (1049)
T KOG0307|consen 664 LAKKFSEYANLLASQGALAAAMSFL 688 (1049)
T ss_pred HHHHHHHHHHHHHhcChHHHHHhhc
Confidence 4555666677778889998887776
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=86.23 E-value=7.8 Score=48.43 Aligned_cols=108 Identities=15% Similarity=0.096 Sum_probs=78.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhc--CC----CChhH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 000191 897 LESSKTALDKGKLEDAVTYGTKALAKLVAVC--GP----YHRMT----AGAYSLLAVVLYHTGDFNQATIYQQKALDINE 966 (1888)
Q Consensus 897 lelG~~~l~qGd~dEAie~~eeAL~l~eqi~--G~----dhpe~----A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~E 966 (1888)
+.-|..++.+++|..|..-|..||+++.+.. +. ...++ ..+...|..||..+++.+.|+....+.+.+
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l-- 257 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL-- 257 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc--
Confidence 3344555666777777777777777655431 11 11122 223457899999999999999999999876
Q ss_pred HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 967 RELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 1012 (1888)
Q Consensus 967 r~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G 1012 (1888)
+|.+...+..-|.++..+.+|.+|-+-+.-|..++....|
T Consensus 258 ------nP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~ 297 (569)
T PF15015_consen 258 ------NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGG 297 (569)
T ss_pred ------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5666777778899999999999999988888888766433
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.17 E-value=44 Score=43.52 Aligned_cols=186 Identities=12% Similarity=0.100 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH-HHHHh--------cCCHHHHHHHHHHHH
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLA-VVLYH--------TGDFNQATIYQQKAL 962 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA-~ly~~--------lGdyeeAl~~~eKAL 962 (1888)
..-.+|++|..+..+.+|.+|..++....+... .--..|..++ .+|.. .|+-+.|..+++.+.
T Consensus 302 ~~l~~fE~aw~~v~~~~~~~aad~~~~L~desd--------WS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~ 373 (546)
T KOG3783|consen 302 KSLMVFERAWLSVGQHQYSRAADSFDLLRDESD--------WSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGE 373 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh--------hhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHH
Confidence 356788889999989999999888877665521 1111233333 33322 345555555554443
Q ss_pred HHHHHhcCCCCh--------------------hhH--HHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCChhH
Q 000191 963 DINERELGLDHP--------------------DTM--KSYGDLAVFYYRLQHT--ELALKYVKRALYLLHLTCGPSHPNT 1018 (1888)
Q Consensus 963 ~I~Er~lG~Dhp--------------------~ta--~ay~nLA~ly~~lGdy--eeALey~~kALeL~~ki~G~dhP~~ 1018 (1888)
.+... -|.+-| ... .-|+.++.++..-.+. ++.+ ++..-+..---.+..+.
T Consensus 374 ~l~~~-a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~----k~~~~~~~~~~~d~Dd~ 448 (546)
T KOG3783|consen 374 ELLAN-AGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWNGFSRMSKNELE----KMRAELENPKIDDSDDE 448 (546)
T ss_pred HHHHh-ccccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHhhcccCChhhHH----HHHHHHhccCCCCchHH
Confidence 33222 111111 011 1234454444333222 2222 22222211111122334
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHH
Q 000191 1019 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEA-YPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1019 a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGd-ydeAle~lqkALeI~ 1091 (1888)
..-+.-+|.++..+|+-..|..+|..+++-. .....+......+++.||.+|..+|. ..+|..++.+|.+.+
T Consensus 449 ~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e-~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 449 GLKYLLKGVILRNLGDSEVAPKCFKIQVEKE-SKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 5556778999999999999999999988663 22235566678899999999999998 999999999987653
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=86.15 E-value=58 Score=40.33 Aligned_cols=125 Identities=14% Similarity=0.066 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC
Q 000191 953 QATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL 1032 (1888)
Q Consensus 953 eAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~l 1032 (1888)
..+.+|++||.. .+++......|..+| ....+.++..+-+++++.. .++.+.+...|.+.-..-...
T Consensus 49 ~klsilerAL~~-----np~~~~L~l~~l~~~---~~~~~~~~l~~~we~~l~~-----~~~~~~LW~~yL~~~q~~~~~ 115 (321)
T PF08424_consen 49 RKLSILERALKH-----NPDSERLLLGYLEEG---EKVWDSEKLAKKWEELLFK-----NPGSPELWREYLDFRQSNFAS 115 (321)
T ss_pred HHHHHHHHHHHh-----CCCCHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHhcc
Confidence 344455555554 234445555555544 3445666666666666653 233444544454443333445
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCC----------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1033 GNVHVALRYLHKALKCNQRLLGPD----------HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1033 G~yeeAle~LekALei~ek~~G~d----------~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
-.+...+..|.++|+......... ......++.+++..+...|..+.|+..++-.+++
T Consensus 116 f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 116 FTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred CcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 568899999999998876654322 2345677778888888999999999999877765
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.10 E-value=23 Score=44.20 Aligned_cols=159 Identities=18% Similarity=0.057 Sum_probs=104.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhH--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 000191 901 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMT--AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK 978 (1888)
Q Consensus 901 ~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~--A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ 978 (1888)
...+..|+++.|+++........ +.+.+-.+. +..+..-++.. .--+...|.....+++++ .++..-
T Consensus 196 e~r~~~gdWd~AlkLvd~~~~~~--vie~~~aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL--------~pdlvP 264 (531)
T COG3898 196 EARCAAGDWDGALKLVDAQRAAK--VIEKDVAERSRAVLLTAKAMSL-LDADPASARDDALEANKL--------APDLVP 264 (531)
T ss_pred HHHHhcCChHHHHHHHHHHHHHH--hhchhhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhc--------CCccch
Confidence 34567899999999998877653 222222222 22222222222 234577888888888776 356666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcH
Q 000191 979 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI 1058 (1888)
Q Consensus 979 ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~ 1058 (1888)
+-.--|..|+..|+..++-..++.+.+. .-||+++.+ |....--+.++.-++++-++.. -.+
T Consensus 265 aav~AAralf~d~~~rKg~~ilE~aWK~------ePHP~ia~l-------Y~~ar~gdta~dRlkRa~~L~s-----lk~ 326 (531)
T COG3898 265 AAVVAARALFRDGNLRKGSKILETAWKA------EPHPDIALL-------YVRARSGDTALDRLKRAKKLES-----LKP 326 (531)
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHhc------CCChHHHHH-------HHHhcCCCcHHHHHHHHHHHHh-----cCc
Confidence 6677788999999999999998887663 568986544 3333334566777777766542 234
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000191 1059 QTAASYHAIAIALSLMEAYPLSVQHEQTTL 1088 (1888)
Q Consensus 1059 ~tA~al~nLA~ay~~lGdydeAle~lqkAL 1088 (1888)
+.+.....+++.-..-|+|..|....+.+.
T Consensus 327 nnaes~~~va~aAlda~e~~~ARa~Aeaa~ 356 (531)
T COG3898 327 NNAESSLAVAEAALDAGEFSAARAKAEAAA 356 (531)
T ss_pred cchHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 556677778888888899988876555444
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=85.93 E-value=5.5 Score=39.30 Aligned_cols=72 Identities=17% Similarity=0.204 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 968 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~ 968 (1888)
.++...+.|.-++.+.+..+|+..+.++|.... +.++...++..|..+|...|+|.+++.+..+=+.+++..
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~-----~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~el 76 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKIT-----DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEEL 76 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcC-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 366777888888899999999999999998742 345667888999999999999999999999888888764
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2 | Back alignment and domain information |
|---|
Probab=85.92 E-value=1.1 Score=43.19 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=52.9
Q ss_pred EEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc--c-CceeEEec
Q 000191 28 ITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL--K-PCVLSLTE 96 (1888)
Q Consensus 28 itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l--k-~~~L~lVe 96 (1888)
|+|+++.+....+..-++++|.+|++.|.... .++...+.|.| +|..|+|-..+++. + +++|.|+-
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~-gi~~~~q~L~~--~G~~L~D~~tL~~~~i~~~~tl~l~~ 69 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRE-RVQADQFWLSF--EGRPMEDEHPLGEYGLKPGCTVFMNL 69 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHh-CCCHHHeEEEE--CCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 67999998877666656799999999998865 47888899986 99999997766664 2 57887764
|
ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. |
| >cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2 | Back alignment and domain information |
|---|
Probab=85.56 E-value=1.4 Score=42.11 Aligned_cols=65 Identities=20% Similarity=0.270 Sum_probs=51.4
Q ss_pred EEEEEEcCCCCceEEEcc-ChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEe
Q 000191 26 LDITVNLPDDTRVILKGI-STDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLT 95 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~i-s~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lV 95 (1888)
++|+|+++.... ...+ ++++|.+|++.|..... ++...+.|-+ .|..|+|...|++.. |++|.||
T Consensus 1 ~~i~vk~~~g~~--~l~v~~~~TV~~lK~~I~~~~~-i~~~~~~Li~--~Gk~L~d~~tL~~~~i~~~stl~l~ 69 (71)
T cd01808 1 IKVTVKTPKDKE--EIEIAEDASVKDFKEAVSKKFK-ANQEQLVLIF--AGKILKDTDTLTQHNIKDGLTVHLV 69 (71)
T ss_pred CEEEEEcCCCCE--EEEECCCChHHHHHHHHHHHhC-CCHHHEEEEE--CCeEcCCCCcHHHcCCCCCCEEEEE
Confidence 469999997753 3344 55999999999998775 7888888876 999999987776643 6999887
|
hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein. |
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.47 E-value=20 Score=44.89 Aligned_cols=143 Identities=17% Similarity=0.121 Sum_probs=99.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHh-cCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 000191 901 KTALDKGKLEDAVTYGTKALAKLVAV-CGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS 979 (1888)
Q Consensus 901 ~~~l~qGd~dEAie~~eeAL~l~eqi-~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~a 979 (1888)
..++.+.++.+|...-...+.-.... .-..+-..+.+|+.+..+|...|+...-...+..-+... .++.|....+..
T Consensus 134 Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA--tLrhd~e~qavL 211 (493)
T KOG2581|consen 134 LFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA--TLRHDEEGQAVL 211 (493)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh--hhcCcchhHHHH
Confidence 44556778888888777766532110 001123457889999999999999776666666555543 345565556666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 980 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 980 y~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
.+.|=..|...+.|+.|..+..++..-- .....+.+..++.+|.+..-+++|..|.+++.+|+...
T Consensus 212 iN~LLr~yL~n~lydqa~~lvsK~~~pe----~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 212 INLLLRNYLHNKLYDQADKLVSKSVYPE----AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhcccCcc----ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 6677788888888999887766654210 11233678888899999999999999999999998764
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.46 E-value=41 Score=44.21 Aligned_cols=67 Identities=15% Similarity=0.082 Sum_probs=41.0
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 000191 1028 MEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAA 1107 (1888)
Q Consensus 1028 iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~ 1107 (1888)
+....++|.+|....++-=+ ..-..|+..|+-+....+|++|.+.|.+|- ++.++..
T Consensus 782 lHve~~~W~eAFalAe~hPe-----------~~~dVy~pyaqwLAE~DrFeEAqkAfhkAG------------r~~EA~~ 838 (1081)
T KOG1538|consen 782 LHVETQRWDEAFALAEKHPE-----------FKDDVYMPYAQWLAENDRFEEAQKAFHKAG------------RQREAVQ 838 (1081)
T ss_pred heeecccchHhHhhhhhCcc-----------ccccccchHHHHhhhhhhHHHHHHHHHHhc------------chHHHHH
Confidence 34456777776654432211 123456777888899999999988887664 2344555
Q ss_pred HHHHHHHHHH
Q 000191 1108 WLEYFESKAF 1117 (1888)
Q Consensus 1108 ~La~L~qka~ 1117 (1888)
.|.+++..+.
T Consensus 839 vLeQLtnnav 848 (1081)
T KOG1538|consen 839 VLEQLTNNAV 848 (1081)
T ss_pred HHHHhhhhhh
Confidence 5555555443
|
|
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.32 E-value=28 Score=43.76 Aligned_cols=143 Identities=13% Similarity=0.085 Sum_probs=91.8
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 000191 1026 AMMEEGLGNVHVALRYLHKALKCNQRLLGPD--HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQ 1103 (1888)
Q Consensus 1026 A~iy~~lG~yeeAle~LekALei~ek~~G~d--~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl 1103 (1888)
...+..++++.+|..+-+..+.-.. ..... ....+.+|+.+..+|...|+...-...+..-+.. +.|+.+.....
T Consensus 133 ~Lfl~d~K~~kea~~~~~~~l~~i~-~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrt--AtLrhd~e~qa 209 (493)
T KOG2581|consen 133 LLFLIDQKEYKEADKISDALLASIS-IQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRT--ATLRHDEEGQA 209 (493)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH--hhhcCcchhHH
Confidence 3344556788888877766554321 11111 2346788889999999999876555555443433 34555544444
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000191 1104 DAAAWLE--YFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1104 ~a~~~La--~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
....||. ++..+.++++..+......++.. ....++..++++|.+..-+++|..|.+|+-+|+.....
T Consensus 210 vLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~----snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 210 VLINLLLRNYLHNKLYDQADKLVSKSVYPEAA----SNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhcccCcccc----ccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 4444544 55556666666655444444322 22378899999999999999999999999999886653
|
|
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=85.13 E-value=23 Score=44.82 Aligned_cols=144 Identities=17% Similarity=0.066 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLL--AVVLYHTGDFNQATIYQQKALDINERE 968 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~L--A~ly~~lGdyeeAl~~~eKAL~I~Er~ 968 (1888)
..+...+..+..++..++|..|...+...+.. +-+. .. ...+..| |..+|...++.+|..++++.+......
T Consensus 129 ~~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~--~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l 202 (379)
T PF09670_consen 129 VFGDREWRRAKELFNRYDYGAAARILEELLRR---LPGR--EE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL 202 (379)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCch--hh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh
Confidence 34566777888999999999999999998764 2111 11 3445555 455678899999999999877642110
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000191 969 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 969 lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
......+..+..+ -+++..+.............-....+..+...|.--...|+|+.|+..+-+++++
T Consensus 203 -----~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 203 -----NQEREGLKELVEV-------LKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred -----HhHHHHHHHHHHH-------HHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 0001111111111 1222222222221111000001223333334455555789999999999999988
Q ss_pred HHHh
Q 000191 1049 NQRL 1052 (1888)
Q Consensus 1049 ~ek~ 1052 (1888)
+.+.
T Consensus 271 ~~Q~ 274 (379)
T PF09670_consen 271 LAQH 274 (379)
T ss_pred HHHH
Confidence 6543
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=84.68 E-value=7.4 Score=38.44 Aligned_cols=68 Identities=16% Similarity=0.028 Sum_probs=53.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 000191 1023 INVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL 1095 (1888)
Q Consensus 1023 ~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~L 1095 (1888)
..-|.-+....+.++|+..++++|+.. .+.+....++-.|.++|...|+|++++.+.-.-+.+..+.-
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ele 77 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELE 77 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 334555667788899999999999875 34456777888899999999999999999888777776543
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=84.18 E-value=5.9 Score=41.49 Aligned_cols=102 Identities=18% Similarity=0.152 Sum_probs=64.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000191 899 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT----GDFNQATIYQQKALDINERELGLDHP 974 (1888)
Q Consensus 899 lG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~l----GdyeeAl~~~eKAL~I~Er~lG~Dhp 974 (1888)
+|..++..|++-+|+++.+..+.... .+ ...+..+..-|.+++.+ .+.+-=..|+.-+++-+.+..+. +|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~----~~-~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L-sp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHG----ED-ESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL-SP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHcc----CC-CchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc-Ch
Confidence 46778899999999999999887632 22 22224455556666554 34444445666666655554322 46
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
..+..++.||.-+-....|+++....+++|.+
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 66777777777666666666666666666653
|
|
| >PF07145 PAM2: Ataxin-2 C-terminal region; InterPro: IPR009818 This entry represents a conserved region approximately 250 residues long located towards the C terminus of eukaryotic ataxin-2 | Back alignment and domain information |
|---|
Probab=84.10 E-value=0.57 Score=33.40 Aligned_cols=13 Identities=46% Similarity=0.876 Sum_probs=10.4
Q ss_pred CCCCCCCCccCCC
Q 000191 1690 NGNSNVPEFIPGP 1702 (1888)
Q Consensus 1690 ~~~~~~~~f~p~~ 1702 (1888)
.+||+|.||||+-
T Consensus 5 ~LNp~A~eFvP~~ 17 (18)
T PF07145_consen 5 KLNPNAPEFVPSS 17 (18)
T ss_dssp SSSTTSSSS-TTT
T ss_pred ccCCCCccccCCC
Confidence 4899999999973
|
Ataxin-2 is a protein of unknown function, within which expansion of a polyglutamine tract (due to expansion of unstable CAG repeats in the coding region of the SCA2 gene) causes spinocerebellar ataxia type 2 (SCA2), a late-onset neurodegenerative disorder []. The expanded polyglutamine repeat in ataxin-2 causes disruption of the normal morphology of the Golgi complex and increased incidence of cell death []. Ataxin-2 is predicted to consist of mostly non-globular domains [].; PDB: 3NTW_B 1JH4_B 3KTR_B 3KUJ_B 3KUT_D 3KUS_D 1JGN_B 2RQG_A 2RQH_A. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=84.06 E-value=50 Score=40.87 Aligned_cols=128 Identities=13% Similarity=0.042 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Q 000191 909 LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYY 988 (1888)
Q Consensus 909 ~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~ 988 (1888)
.+..+.+|++||+. .+++..+...| -.++....+.++.....++++.. ...++.....|.+.-...+
T Consensus 47 ~E~klsilerAL~~-----np~~~~L~l~~---l~~~~~~~~~~~l~~~we~~l~~-----~~~~~~LW~~yL~~~q~~~ 113 (321)
T PF08424_consen 47 AERKLSILERALKH-----NPDSERLLLGY---LEEGEKVWDSEKLAKKWEELLFK-----NPGSPELWREYLDFRQSNF 113 (321)
T ss_pred HHHHHHHHHHHHHh-----CCCCHHHHHHH---HHHHHHhCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHh
Confidence 34456677777765 23344433333 33444556777777777777765 2345566677776666666
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCC----------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 989 RLQHTELALKYVKRALYLLHLTCGPS----------HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 989 ~lGdyeeALey~~kALeL~~ki~G~d----------hP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
..-.+......|.+++..+....... ...++.++.+++..+...|..+.|+..++..+++.
T Consensus 114 ~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 114 ASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 67788999999999998876654332 22356778888999999999999999999999885
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=83.67 E-value=1.6e+02 Score=44.60 Aligned_cols=112 Identities=22% Similarity=0.080 Sum_probs=82.2
Q ss_pred ccHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 000191 888 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 967 (1888)
Q Consensus 888 ~~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er 967 (1888)
.....++.+++.|++....|+++.|..++-.|.+.. .+.++...|..++.+|+-..|+.++++.+..+.-
T Consensus 1665 ~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r----------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1665 LKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR----------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc----------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 344568899999999999999999999998887651 3468888999999999999999999999976532
Q ss_pred hc-CC--------CChhhHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHH
Q 000191 968 EL-GL--------DHPDTMKSYGDLAVFYYRLQHT--ELALKYVKRALYLLHL 1009 (1888)
Q Consensus 968 ~l-G~--------Dhp~ta~ay~nLA~ly~~lGdy--eeALey~~kALeL~~k 1009 (1888)
-+ ++ +......+...++.+....+++ +.-+++|..|.++..+
T Consensus 1735 ~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~e 1787 (2382)
T KOG0890|consen 1735 DLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPE 1787 (2382)
T ss_pred cccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccc
Confidence 21 11 1111123455666666667775 4567888888887543
|
|
| >KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.65 E-value=19 Score=45.19 Aligned_cols=104 Identities=17% Similarity=0.165 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---HHh
Q 000191 976 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN---QRL 1052 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~---ek~ 1052 (1888)
+-.++..||..|...|+++.|+++|-++...+.. .-.++..+.|+-.+-..+|+|..-..+-.+|..-. ...
T Consensus 149 iRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~ 223 (466)
T KOG0686|consen 149 IRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENL 223 (466)
T ss_pred HHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhH
Confidence 4578899999999999999999999999988754 24567778888888888999988888887776652 110
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 1087 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkA 1087 (1888)
...-+..+.++. |.+...+++|..|..++-.+
T Consensus 224 -~q~v~~kl~C~a--gLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 224 -AQEVPAKLKCAA--GLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred -HHhcCcchHHHH--HHHHHHHHHHHHHHHHHHhC
Confidence 011112234443 45555666888888877543
|
|
| >cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF | Back alignment and domain information |
|---|
Probab=83.64 E-value=1.7 Score=42.60 Aligned_cols=68 Identities=13% Similarity=0.121 Sum_probs=54.1
Q ss_pred EEEEEEcCCCCceEEE-cc-ChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000191 26 LDITVNLPDDTRVILK-GI-STDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~-~i-s~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
++|+|+++.+..+... .+ ++++|.+|++.|.+.. .+.-....|.| +|..|+|...|++.. |++|.|+-
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~-gi~~~~QrLi~--~Gk~L~D~~tL~~y~i~~~~~i~l~~ 73 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELF-NVEPECQRLFY--RGKQMEDGHTLFDYNVGLNDIIQLLV 73 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHh-CCCHHHeEEEe--CCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 4799999988875333 45 5699999999999865 48888888986 999999988777753 68888764
|
NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation. |
| >cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2 | Back alignment and domain information |
|---|
Probab=83.58 E-value=2.3 Score=41.69 Aligned_cols=70 Identities=11% Similarity=0.143 Sum_probs=53.2
Q ss_pred EEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000191 26 LDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
++|+|+++.+....+..-++++|.||++.+.... .+....+.|.+.++|..|+|-..+++.. |++|.|+-
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~-~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~ 75 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKI-GVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVV 75 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHh-CCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEE
Confidence 7899999987665543335599999999999876 4777888884435899999976666643 68888874
|
ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. |
| >cd01806 Nedd8 Nebb8-like ubiquitin protein | Back alignment and domain information |
|---|
Probab=83.56 E-value=1.8 Score=41.30 Aligned_cols=68 Identities=18% Similarity=0.175 Sum_probs=51.7
Q ss_pred EEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000191 26 LDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
++|+|+++++..+.+..-.+++|.+|++.|.... .+.-....|.+ +|..|+|...+++.. |++|.|+-
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~-g~~~~~qrL~~--~g~~L~d~~tl~~~~i~~g~~i~l~~ 71 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKE-GIPPQQQRLIY--SGKQMNDDKTAADYKLEGGSVLHLVL 71 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhh-CCChhhEEEEE--CCeEccCCCCHHHcCCCCCCEEEEEE
Confidence 4799999987655443335599999999999876 46667777875 999999977777653 68888874
|
Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. |
| >smart00101 14_3_3 14-3-3 homologues | Back alignment and domain information |
|---|
Probab=83.03 E-value=1.1e+02 Score=36.57 Aligned_cols=188 Identities=15% Similarity=0.054 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 895 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH-TGDFNQATIYQQKALDINERELGLDH 973 (1888)
Q Consensus 895 ~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~-lGdyeeAl~~~eKAL~I~Er~lG~Dh 973 (1888)
.+..+|+.+-+.++|++.+.+..+++.... . ......=.+.|+.+|-. .|..-.+...... ++.-+...|.
T Consensus 3 ~~v~~Aklaeq~eRyddm~~~mk~~~~~~~----~-~eLt~EERnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~~~~-- 74 (244)
T smart00101 3 ENVYMAKLAEQAERYEEMVEFMEKVAKTVD----S-EELTVEERNLLSVAYKNVIGARRASWRIISS-IEQKEESRGN-- 74 (244)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhcC----C-ccCCHHHHHHHHHHHhhhhcccHHHHHHHhH-HHHhhhccCc--
Confidence 345677888889999999999998766421 0 01122334555555532 3444444444332 2221111111
Q ss_pred hhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCCC--Chh-HHHHHHHHHHHHHH-----CCC-----HHHHH
Q 000191 974 PDTMKSYGDLAVFYYRLQH-TELALKYVKRALYLLHLTCGPS--HPN-TAATYINVAMMEEG-----LGN-----VHVAL 1039 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~lGd-yeeALey~~kALeL~~ki~G~d--hP~-~a~a~~NLA~iy~~-----lG~-----yeeAl 1039 (1888)
... ..+..-| .++ -++=..++...+.+....+-+. .+. .+..+-..|..|.- .|+ .+.|.
T Consensus 75 ~~~----~~~~~~y--r~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~ 148 (244)
T smart00101 75 EDH----VASIKEY--RGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTL 148 (244)
T ss_pred hHH----HHHHHHH--HHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 110 1111111 111 1333445666666665544332 111 12222222333321 222 45899
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHHhcC
Q 000191 1040 RYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL-MEAYPLSVQHEQTTLQILRAKLG 1096 (1888)
Q Consensus 1040 e~LekALei~ek~~G~d~~~tA~al~nLA~ay~~-lGdydeAle~lqkALeI~kk~LG 1096 (1888)
..|++|+++....+.+.||....+..|.+..|+. +++.++|....++|++-....+.
T Consensus 149 ~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld 206 (244)
T smart00101 149 VAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELD 206 (244)
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhh
Confidence 9999999998877788899888888888776664 69999999999988877655444
|
14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases. |
| >KOG0508 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.69 E-value=1.5 Score=54.80 Aligned_cols=132 Identities=23% Similarity=0.177 Sum_probs=89.8
Q ss_pred HHHHHHHHHHc-CChHHHHHHHHHHHHHHHHh----cCC--CChhHHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHH
Q 000191 896 LLESSKTALDK-GKLEDAVTYGTKALAKLVAV----CGP--YHRMTAGAYS----LLAVVLYHTGDFNQATIYQQKALDI 964 (1888)
Q Consensus 896 LlelG~~~l~q-Gd~dEAie~~eeAL~l~eqi----~G~--dhpe~A~ay~----~LA~ly~~lGdyeeAl~~~eKAL~I 964 (1888)
+--+|..|... .+.-.|+.++.+++....+- ... ..|..+.-|. +...+-...+|.+ .+--+||.+
T Consensus 248 lEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p~~ay~~~re~~~~~elE~lv~D~d---~~RmqaLii 324 (615)
T KOG0508|consen 248 LELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPLEPVLAYGYGREVNNREELEELVEDPD---EMRMQALII 324 (615)
T ss_pred HHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCCCchhhhhhhhhcCCHHHHHHHhcChH---HHHHHHHHH
Confidence 33345555433 35677899999998876551 000 1111111111 1111222223332 234578999
Q ss_pred HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 000191 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE 1030 (1888)
Q Consensus 965 ~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~ 1030 (1888)
.++++|++|+++.......|-+|..+|+++..+++++.||.+.++.+.+-.|.++..+...|.++.
T Consensus 325 rerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS 390 (615)
T KOG0508|consen 325 RERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFS 390 (615)
T ss_pred HHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHH
Confidence 999999999999877777889999999999999999999999999988888998888887777664
|
|
| >cd01804 midnolin_N Ubiquitin-like domain of midnolin | Back alignment and domain information |
|---|
Probab=82.57 E-value=2.8 Score=40.96 Aligned_cols=68 Identities=18% Similarity=0.282 Sum_probs=52.7
Q ss_pred EEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEecc
Q 000191 26 LDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTEE 97 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVee 97 (1888)
++|+|++.......+..-++++|.||++.|.... .|+.....|.+ +|..|+|. .|.+.. |++|.||..
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~-~~~~~~qrL~~--~Gk~L~d~-~L~~~gi~~~~~i~l~~~ 72 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRL-KVPKERLALLH--RETRLSSG-KLQDLGLGDGSKLTLVPT 72 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHh-CCChHHEEEEE--CCcCCCCC-cHHHcCCCCCCEEEEEee
Confidence 6899999987654444446699999999998876 47777777775 89999997 677643 699998864
|
midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain. |
| >KOG0508 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.60 E-value=1.9 Score=54.06 Aligned_cols=75 Identities=27% Similarity=0.274 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHc
Q 000191 1000 VKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLM 1074 (1888)
Q Consensus 1000 ~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~l 1074 (1888)
--+||-+.+.++|+.||++.......|-+|...|+++..++++.-||++.++.+.+-++.++..+...|+++..+
T Consensus 318 RmqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~m 392 (615)
T KOG0508|consen 318 RMQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSFM 392 (615)
T ss_pred HHHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHH
Confidence 346777888899999999987777789999999999999999999999999999999999999999999887643
|
|
| >PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=81.56 E-value=14 Score=39.43 Aligned_cols=73 Identities=23% Similarity=0.239 Sum_probs=58.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC---hh----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000191 938 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH---PD----TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010 (1888)
Q Consensus 938 y~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh---p~----ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki 1010 (1888)
+.++|...+..+++-.|+-.|++|+.+.++...... .+ ......|||.++..+|+.+-.++|++-|-+....+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 567899999999999999999999999988731111 11 12567899999999999999999999887765443
|
|
| >cd01809 Scythe_N Ubiquitin-like domain of Scythe protein | Back alignment and domain information |
|---|
Probab=81.19 E-value=2.3 Score=40.16 Aligned_cols=68 Identities=16% Similarity=0.221 Sum_probs=50.5
Q ss_pred EEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000191 26 LDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
+.|.|+++++....+..-.+++|.++++.|..... +.-....|.+ +|..|+|...+.+.. |++|.||.
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g-i~~~~q~L~~--~g~~L~d~~~L~~~~i~~~~~l~l~~ 71 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVG-IPVEQQRLIY--SGRVLKDDETLSEYKVEDGHTIHLVK 71 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC-cCHHHeEEEE--CCEECCCcCcHHHCCCCCCCEEEEEe
Confidence 47899999876655544456999999999988765 3444556664 999999977666643 68888873
|
Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=80.97 E-value=15 Score=47.63 Aligned_cols=98 Identities=21% Similarity=0.212 Sum_probs=73.4
Q ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 978 KSYGDLAVFYY-RLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 1056 (1888)
Q Consensus 978 ~ay~nLA~ly~-~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d 1056 (1888)
..+.++|.+|. .+|+..+|+.++..|+.+. ..|... .++..||.++.+.|...+|--.+..|+.-.
T Consensus 213 w~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~-----~~h~kd-i~lLSlaTiL~RaG~sadA~iILhAA~~dA------- 279 (886)
T KOG4507|consen 213 WVLHNMASFYWRIKGEPYQAVECAMRALHFS-----SRHNKD-IALLSLATVLHRAGFSADAAVILHAALDDA------- 279 (886)
T ss_pred HHHHHHHHHHHHHcCChhhhhHHHHHHhhhC-----Cccccc-chhhhHHHHHHHcccccchhheeehhccCC-------
Confidence 33445665554 5699999999999998764 333322 346679999999999999988887776543
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000191 1057 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1057 ~~~tA~al~nLA~ay~~lGdydeAle~lqkALe 1089 (1888)
+..+.-++.++++|..+|+|...+.+|..|.+
T Consensus 280 -~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k 311 (886)
T KOG4507|consen 280 -DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQ 311 (886)
T ss_pred -ccccccceeHHHHHHHHhhhhhhhhhhhhhhc
Confidence 23344478899999999999999999987764
|
|
| >COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.84 E-value=39 Score=40.80 Aligned_cols=132 Identities=11% Similarity=0.007 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 000191 910 EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR 989 (1888)
Q Consensus 910 dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~ 989 (1888)
++-++-+.++++-.+..-| ..+.+.++.++|..|.+.++.+.+.++..+.+.-.-. ..-..+...+-..||.+|..
T Consensus 92 eeki~Elde~i~~~eedng--E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~s--tg~KiDv~l~kiRlg~~y~d 167 (412)
T COG5187 92 EEKIEELDERIREKEEDNG--ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMS--TGLKIDVFLCKIRLGLIYGD 167 (412)
T ss_pred HHHHHHHHHHHHHHhhccc--chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--cccchhhHHHHHHHHHhhcc
Confidence 4446666666666554422 3456889999999999999999999998887765433 22345667777889999877
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000191 990 LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 990 lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
+.-.++.++.....++ + |.+....-..-...|.......+|.+|-.++-..+.-+.
T Consensus 168 ~~vV~e~lE~~~~~iE---k--GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 168 RKVVEESLEVADDIIE---K--GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred HHHHHHHHHHHHHHHH---h--CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 7666666655544443 2 444333222223356666677788888888877766543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=80.64 E-value=65 Score=45.41 Aligned_cols=100 Identities=13% Similarity=-0.024 Sum_probs=53.0
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------HHHHhcCCCcHH
Q 000191 988 YRLQHTELALKYVKRALYLLHLTC--GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK------CNQRLLGPDHIQ 1059 (1888)
Q Consensus 988 ~~lGdyeeALey~~kALeL~~ki~--G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALe------i~ek~~G~d~~~ 1059 (1888)
...+-|++|+.+|.--.+-.+.++ -.+|-....-+...|.+|...|+.++|+..|+.+.. +..+.. .....
T Consensus 919 ~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~-~~~de 997 (1265)
T KOG1920|consen 919 KKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLS-EGKDE 997 (1265)
T ss_pred HhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhc-CCHHH
Confidence 345666777766543333222221 011222222345568889999999999998875543 333221 11122
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000191 1060 TAASYHAIAIALSLMEAYPLSVQHEQTTL 1088 (1888)
Q Consensus 1060 tA~al~nLA~ay~~lGdydeAle~lqkAL 1088 (1888)
....-..|+.-+..++++-+|-....+.+
T Consensus 998 ~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 998 LVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 22233455666667777766666554443
|
|
| >KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.64 E-value=61 Score=41.20 Aligned_cols=118 Identities=15% Similarity=0.052 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC----hhHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHH
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYH----RMTAGAYSLLAVVLYHTGDF---NQATIYQQKALDI 964 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dh----pe~A~ay~~LA~ly~~lGdy---eeAl~~~eKAL~I 964 (1888)
.+-.+++.|+.++....|++|+..+.+|-+.+... +..- ..++..-..+-+||+.+.+. ..|..-+..|-.-
T Consensus 162 mglg~hekaRa~m~re~y~eAl~~LleADe~F~~C-d~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kg 240 (568)
T KOG2561|consen 162 MGLGLHEKARAAMEREMYSEALLVLLEADESFSLC-DSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKG 240 (568)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh-hHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHh
Confidence 46778899999999999999999988887764332 1100 01122223345677776553 4455555445444
Q ss_pred HHHhcC-----------CCChhhH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000191 965 NERELG-----------LDHPDTM---KSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010 (1888)
Q Consensus 965 ~Er~lG-----------~Dhp~ta---~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki 1010 (1888)
+++.+| .+.|+.+ ..+..-|.+.+.+|+-++|.++++.|...+...
T Consensus 241 f~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~el 300 (568)
T KOG2561|consen 241 FERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLEL 300 (568)
T ss_pred hhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHe
Confidence 444444 4455543 445566999999999999999999998877664
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.31 E-value=29 Score=46.96 Aligned_cols=36 Identities=22% Similarity=0.181 Sum_probs=30.6
Q ss_pred CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 000191 930 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 965 (1888)
Q Consensus 930 dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~ 965 (1888)
+...++.++...|.-++..|++++|..+|-+++...
T Consensus 363 d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 363 DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 344567889999999999999999999999988753
|
|
| >cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein | Back alignment and domain information |
|---|
Probab=80.14 E-value=2.5 Score=40.53 Aligned_cols=64 Identities=17% Similarity=0.165 Sum_probs=49.2
Q ss_pred EEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc--c-CceeEEe
Q 000191 29 TVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL--K-PCVLSLT 95 (1888)
Q Consensus 29 tv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l--k-~~~L~lV 95 (1888)
.|+++.+....+..-++++|.||++.|.... .++-....|.+ .|..|+|...+.+. + +++|+|+
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~-gi~~~~q~Li~--~G~~L~D~~~l~~~~i~~~~tv~~~ 68 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAE-GVDPCCQRWFF--SGKLLTDKTRLQETKIQKDYVVQVI 68 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHh-CCCHHHeEEEE--CCeECCCCCCHHHcCCCCCCEEEEE
Confidence 4678877666655446699999999998864 57888888875 99999998777653 3 5888875
|
DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis. |
| >COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.01 E-value=73 Score=38.64 Aligned_cols=132 Identities=11% Similarity=0.134 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 000191 950 DFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMME 1029 (1888)
Q Consensus 950 dyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy 1029 (1888)
.-++-++-+.++++-.+...| ..+.+.+..|+|.+|.+.++.+.+.+++.+.+.-.... | -..++..+...||.+|
T Consensus 90 kneeki~Elde~i~~~eedng--E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st-g-~KiDv~l~kiRlg~~y 165 (412)
T COG5187 90 KNEEKIEELDERIREKEEDNG--ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST-G-LKIDVFLCKIRLGLIY 165 (412)
T ss_pred hhHHHHHHHHHHHHHHhhccc--chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc-c-cchhhHHHHHHHHHhh
Confidence 344555666666666555332 24567899999999999999999999999887654332 2 2345666677788888
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 000191 1030 EGLGNVHVALRYLHKALKCNQRLLGPDHI--QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 1092 (1888)
Q Consensus 1030 ~~lG~yeeAle~LekALei~ek~~G~d~~--~tA~al~nLA~ay~~lGdydeAle~lqkALeI~k 1092 (1888)
..+.-.++.++... .+.++ |.+.. +...+| .|.......+|.+|...+-..+..|.
T Consensus 166 ~d~~vV~e~lE~~~---~~iEk--GgDWeRrNRyK~Y--~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 166 GDRKVVEESLEVAD---DIIEK--GGDWERRNRYKVY--KGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred ccHHHHHHHHHHHH---HHHHh--CCCHHhhhhHHHH--HHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 76654444444333 33333 22221 222333 35555556677777777666665443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1888 | ||||
| 3nf1_A | 311 | Crystal Structure Of The Tpr Domain Of Kinesin Ligh | 6e-10 | ||
| 3nf1_A | 311 | Crystal Structure Of The Tpr Domain Of Kinesin Ligh | 5e-09 | ||
| 3ceq_A | 283 | The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc | 2e-08 | ||
| 3ceq_A | 283 | The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc | 7e-06 | ||
| 3edt_B | 283 | Crystal Structure Of The Mutated S328n Hklc2 Tpr Do | 2e-08 | ||
| 3edt_B | 283 | Crystal Structure Of The Mutated S328n Hklc2 Tpr Do | 4e-06 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 2e-04 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 6e-04 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 2e-04 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 9e-04 |
| >pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain 1 Length = 311 | Back alignment and structure |
|
| >pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain 1 Length = 311 | Back alignment and structure |
|
| >pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2) Length = 283 | Back alignment and structure |
|
| >pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2) Length = 283 | Back alignment and structure |
|
| >pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain Length = 283 | Back alignment and structure |
|
| >pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain Length = 283 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 1e-38
Identities = 56/220 (25%), Positives = 88/220 (40%), Gaps = 3/220 (1%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
+G+ E AV +AL L G H A ++LA+V + A AL I
Sbjct: 39 SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI 98
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRL-QHTELALKYVKRALYLLHLTCGPSHPNTAATYI 1023
E+ LG DHP + +LAV Y + ++ E A KRAL + G HP+ A
Sbjct: 99 REKTLGKDHPAVAATLNNLAVLYGKRGKYKE-AEPLCKRALEIREKVLGKDHPDVAKQLN 157
Query: 1024 NVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQH 1083
N+A++ + G Y +AL+ Q LGPD A + + +A + +
Sbjct: 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETL 217
Query: 1084 EQTTLQILRAK-LGPDDLRTQDAAAWLEYFESKAFEQQEA 1122
+ L + G D + E E +Q++
Sbjct: 218 YKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDG 257
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 2e-35
Identities = 47/199 (23%), Positives = 69/199 (34%), Gaps = 3/199 (1%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
D+ K +DA ALA G H A + LAV+ G + +A ++AL+I
Sbjct: 81 DQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 140
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 1024
E+ LG DHPD K +LA+ E Y +RAL + GP PN A T N
Sbjct: 141 REKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNN 200
Query: 1025 VAMMEEGLGNVHVALRYLHKAL-KCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQH 1083
+A G A + L + ++R G + +
Sbjct: 201 LASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF 260
Query: 1084 EQTTLQILRAKLGPDDLRT 1102
+ D
Sbjct: 261 GE--YGGWYKACKVDSPTV 277
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 1e-34
Identities = 35/189 (18%), Positives = 67/189 (35%), Gaps = 3/189 (1%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
+GK ++A +AL V G H A + LA++ + G + + Y Q+AL+I
Sbjct: 123 KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC-GPSHPNTAATYI 1023
+ +LG D P+ K+ +LA Y + + A K L H G ++
Sbjct: 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM 242
Query: 1024 NVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQH 1083
+ EE G + + D + + + +
Sbjct: 243 HAEEREECKGKQKDGTSFGEYGGW--YKACKVDSPTVTTTLKNLGALYRRQGKFEAAETL 300
Query: 1084 EQTTLQILR 1092
E+ ++ +
Sbjct: 301 EEAAMRSRK 309
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 5e-34
Identities = 47/175 (26%), Positives = 71/175 (40%)
Query: 928 GPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFY 987
G L + G + A ++AL+ E+ G DHPD LA+ Y
Sbjct: 20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVY 79
Query: 988 YRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 1047
+ A + AL + T G HP AAT N+A++ G A +AL+
Sbjct: 80 RDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 139
Query: 1048 CNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRT 1102
+++LG DH A + +A+ Y + Q L+I + KLGPDD
Sbjct: 140 IREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNV 194
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 1e-24
Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 12/150 (8%)
Query: 957 YQQKAL----DINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 1012
+ ++ + G + P +++ +L + Y E+A+ K+AL L T G
Sbjct: 3 HHHHHSSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG 62
Query: 1013 PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALS 1072
HP+ A +A++ A L+ AL ++ LG DH AA+ + +A+
Sbjct: 63 HDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYG 122
Query: 1073 LM----EAYPLSVQHEQTTLQILRAKLGPD 1098
EA PL ++ L+I LG D
Sbjct: 123 KRGKYKEAEPL---CKR-ALEIREKVLGKD 148
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 4e-06
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 2/63 (3%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
KGK +D ++G C L + G F A ++ A+
Sbjct: 250 CKGKQKDGTSFGEYGGWY--KACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307
Query: 965 NER 967
++
Sbjct: 308 RKQ 310
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 2e-04
Identities = 11/67 (16%), Positives = 19/67 (28%), Gaps = 8/67 (11%)
Query: 1040 RYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLM----EAYPLSVQHEQTTLQILRAKL 1095
+ + G + + H + I + A PL +Q L+ L
Sbjct: 6 HHSSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPL---CKQ-ALEDLEKTS 61
Query: 1096 GPDDLRT 1102
G D
Sbjct: 62 GHDHPDV 68
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 6e-37
Identities = 52/225 (23%), Positives = 89/225 (39%), Gaps = 9/225 (4%)
Query: 903 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKAL 962
+ AV +AL L G H A ++LA+V + +A AL
Sbjct: 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDAL 70
Query: 963 DINERELGLDHPDTMKSYGDLAVFYYRL-QHTELALKYVKRALYLLHLTCGPSHPNTAAT 1021
I E+ LG DHP + +LAV Y + ++ E A KRAL + G HP+ A
Sbjct: 71 AIREKTLGKDHPAVAATLNNLAVLYGKRGKYKE-AEPLCKRALEIREKVLGKFHPDVAKQ 129
Query: 1022 YINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALS----LMEAY 1077
N+A++ + G Y +AL+ LGPD A + + +A +A
Sbjct: 130 LNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAE 189
Query: 1078 PLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEA 1122
L +++ + + G + + E E +++++
Sbjct: 190 TL---YKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDS 231
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 2e-35
Identities = 45/199 (22%), Positives = 71/199 (35%), Gaps = 3/199 (1%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
D+ K ++A ALA G H A + LAV+ G + +A ++AL+I
Sbjct: 55 DQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 114
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 1024
E+ LG HPD K +LA+ E Y +RAL + GP PN A T N
Sbjct: 115 REKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174
Query: 1025 VAMMEEGLGNVHVALRYLHKAL-KCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQH 1083
+A G A + L + +++ G + + + S +
Sbjct: 175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY 234
Query: 1084 EQTTLQILRAKLGPDDLRT 1102
+ D
Sbjct: 235 GEYGSWY--KACKVDSPTV 251
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 1e-34
Identities = 35/191 (18%), Positives = 66/191 (34%), Gaps = 11/191 (5%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
+GK ++A +AL V G +H A + LA++ + G + Y ++AL+I
Sbjct: 97 KRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC-GPSHPNTAATYI 1023
LG D P+ K+ +LA Y + + A K L H G + + ++
Sbjct: 157 YATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWM 216
Query: 1024 NVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLM----EAYPL 1079
+ EE + Y + D + ++ A+ L
Sbjct: 217 HAEEREESKDKRRDSAPYGEYGSW--YKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTL 274
Query: 1080 SVQHEQTTLQI 1090
+ +
Sbjct: 275 ---EDC-ASRN 281
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 2e-29
Identities = 43/175 (24%), Positives = 67/175 (38%), Gaps = 8/175 (4%)
Query: 928 GPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFY 987
G H + L A ++AL+ E+ G DHPD LA+ Y
Sbjct: 2 GSSHHHHHHSSGL--------VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVY 53
Query: 988 YRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 1047
+ A + AL + T G HP AAT N+A++ G A +AL+
Sbjct: 54 RDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 113
Query: 1048 CNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRT 1102
+++LG H A + +A+ + + L+I +LGPDD
Sbjct: 114 IREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV 168
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 1e-05
Identities = 10/62 (16%), Positives = 14/62 (22%), Gaps = 2/62 (3%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
K K D+ YG C L + G A + A
Sbjct: 224 SKDKRRDSAPYGEYGSWY--KACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281
Query: 965 NE 966
+
Sbjct: 282 RK 283
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 1e-23
Identities = 29/186 (15%), Positives = 58/186 (31%), Gaps = 8/186 (4%)
Query: 911 DAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970
+A Y + +GA +L V F++A Q ++ G
Sbjct: 4 EAHDYALAERQ--AQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQA-QKSG 60
Query: 971 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE 1030
DH ++ + + + + A + LL +A VA +
Sbjct: 61 -DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASL-PEDPLAASANAYEVATVAL 118
Query: 1031 GLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090
G++ A + K+L Q+ D + A ++ + + + QH I
Sbjct: 119 HFGDLAGARQEYEKSLVYAQQA--DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176
Query: 1091 LRAKLG 1096
+L
Sbjct: 177 FA-ELE 181
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 1e-08
Identities = 19/91 (20%), Positives = 28/91 (30%), Gaps = 4/91 (4%)
Query: 902 TALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKA 961
AL G L A K+L A A+ L + + +A + +A
Sbjct: 116 VALHFGDLAGARQEYEKSLVYAQQA--DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173
Query: 962 LDINERELGLDHPDTMKSYGDLAVFYYRLQH 992
DI EL D + L + H
Sbjct: 174 RDIFA-ELE-DSEAVNELMTRLNGLEHHHHH 202
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 2e-22
Identities = 40/199 (20%), Positives = 66/199 (33%), Gaps = 11/199 (5%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
G DAV + L AYS L G+F A+ Y +K L +
Sbjct: 199 LLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL 256
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 1024
R+L D +S L Y LQ E A+ Y + L + +
Sbjct: 257 A-RQLK-DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--NDRIGEGRACWS 312
Query: 1025 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT-----AASYHAIAIALSLMEAYPL 1079
+ LGN A+ + K L+ ++ + T + + ++ S +
Sbjct: 313 LGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMS 372
Query: 1080 SVQHEQTTLQILRAKLGPD 1098
++L +R KLG
Sbjct: 373 ENTEIDSSLNGVRPKLGRR 391
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 1e-21
Identities = 41/188 (21%), Positives = 73/188 (38%), Gaps = 8/188 (4%)
Query: 906 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 965
+ L+ AV + + L+ + A+ A+ L Y G+F A I ++ L I
Sbjct: 160 RDALQAAVDFYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217
Query: 966 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINV 1025
+E G D ++Y +L Y L E A +Y K+ L L A + ++
Sbjct: 218 -KEFG-DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD--RAVEAQSCYSL 273
Query: 1026 AMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 1085
L + A+ Y K L Q L D I + ++ A + + + ++ +
Sbjct: 274 GNTYTLLQDYEKAIDYHLKHLAIAQEL--NDRIGEGRACWSLGNAYTALGNHDQAMHFAE 331
Query: 1086 TTLQILRA 1093
L+I R
Sbjct: 332 KHLEISRE 339
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 1e-18
Identities = 37/208 (17%), Positives = 70/208 (33%), Gaps = 28/208 (13%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD-------------- 950
G ++A+ + L + A A L V + G
Sbjct: 99 VLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFP 156
Query: 951 ------FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRAL 1004
A + ++ L + LG D +++G+L +Y L + A+ ++ L
Sbjct: 157 EEVRDALQAAVDFYEENLSLV-TALG-DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214
Query: 1005 YLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASY 1064
L+ G Y N+ LG A Y K L ++L D A S
Sbjct: 215 -LIAKEFG-DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSC 270
Query: 1065 HAIAIALSLMEAYPLSVQHEQTTLQILR 1092
+++ +L++ Y ++ + L I +
Sbjct: 271 YSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 4e-18
Identities = 35/209 (16%), Positives = 66/209 (31%), Gaps = 28/209 (13%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
A+ Y L + A A L L G+F++A + Q+ LDI
Sbjct: 59 YLHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI 116
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRL--------------------QHTELALKYVKRAL 1004
+ REL D ++ +L Y+ + A+ + + L
Sbjct: 117 S-RELN-DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENL 174
Query: 1005 YLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASY 1064
L+ + N+ LGN A+ + L + D +Y
Sbjct: 175 SLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAY 230
Query: 1065 HAIAIALSLMEAYPLSVQHEQTTLQILRA 1093
+ A + + + ++ + TL + R
Sbjct: 231 SNLGNAYIFLGEFETASEYYKKTLLLARQ 259
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 1e-17
Identities = 28/183 (15%), Positives = 54/183 (29%), Gaps = 16/183 (8%)
Query: 931 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRL 990
+ +L L +GD + + A+ + D Y L Y+ L
Sbjct: 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE----DLKTLSAIYSQLGNAYFYL 60
Query: 991 QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050
AL+Y L L A N+ + LGN A+ + L ++
Sbjct: 61 HDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISR 118
Query: 1051 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE 1110
L D + A + + + + + + AA ++
Sbjct: 119 EL--NDKVGEARALYNLGNVYHAKG------KSFGCPGPQDVGEFPEEVRDALQAA--VD 168
Query: 1111 YFE 1113
++E
Sbjct: 169 FYE 171
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 1e-17
Identities = 27/162 (16%), Positives = 53/162 (32%), Gaps = 9/162 (5%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
G+ E A Y K L + + A + L D+ +A Y K L I
Sbjct: 239 FLGEFETASEYYKKTLLLARQLKD--RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP-----SHPNTA 1019
+EL D ++ L Y L + + A+ + ++ L + + N +
Sbjct: 297 A-QELN-DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLS 354
Query: 1020 ATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTA 1061
+ + + ++ + +L + LG H
Sbjct: 355 DLQMVLGLSYSTNNSIMSENTEIDSSLNGVRPKLGRRHSMEN 396
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 3e-09
Identities = 16/121 (13%), Positives = 36/121 (29%), Gaps = 6/121 (4%)
Query: 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 1031
+ + + + + A+ + +A Y +
Sbjct: 4 SMEASCLELALEGERLCKSGDCRAGVSFFEAAVQV----GTEDLKTLSAIYSQLGNAYFY 59
Query: 1032 LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091
L + AL Y H L + + D + A + + L ++ + ++ Q L I
Sbjct: 60 LHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIS 117
Query: 1092 R 1092
R
Sbjct: 118 R 118
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 3e-09
Identities = 23/129 (17%), Positives = 39/129 (30%), Gaps = 9/129 (6%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
E A+ Y K LA +A A L G+ +QA + +K L+I
Sbjct: 279 LLQDYEKAIDYHLKHLA--IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336
Query: 965 NERELGLD------HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT 1018
+ RE+G + L + Y + +L + G H
Sbjct: 337 S-REVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNGVRPKLGRRHSME 395
Query: 1019 AATYINVAM 1027
+ +
Sbjct: 396 NMELMKLTP 404
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 6e-04
Identities = 10/80 (12%), Positives = 24/80 (30%), Gaps = 4/80 (5%)
Query: 1014 SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL 1073
S + G+ + + A++ D +A Y + A
Sbjct: 4 SMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE----DLKTLSAIYSQLGNAYFY 59
Query: 1074 MEAYPLSVQHEQTTLQILRA 1093
+ Y ++++ L + R
Sbjct: 60 LHDYAKALEYHHHDLTLART 79
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 98.1 bits (245), Expect = 8e-22
Identities = 44/215 (20%), Positives = 78/215 (36%), Gaps = 9/215 (4%)
Query: 882 VHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLL 941
V+ S + L+ AV + L+ + A+ A+ L
Sbjct: 132 VYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL--GDRAAQGRAFGNL 189
Query: 942 AVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVK 1001
Y G+F A I ++ L I +E G D ++Y +L Y L E A +Y K
Sbjct: 190 GNTHYLLGNFRDAVIAHEQRLLIA-KEFG-DKAAERRAYSNLGNAYIFLGEFETASEYYK 247
Query: 1002 RALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTA 1061
+ L L A + ++ L + A+ Y K L Q L D I
Sbjct: 248 KTLLLARQLKD--RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEG 303
Query: 1062 ASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 1096
+ ++ A + + + ++ + L+I R ++G
Sbjct: 304 RACWSLGNAYTALGNHDQAMHFAEKHLEISR-EVG 337
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 3e-20
Identities = 35/208 (16%), Positives = 65/208 (31%), Gaps = 28/208 (13%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
A+ Y L + A A L L G+F++A + Q+ LDI
Sbjct: 55 YLHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI 112
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRL--------------------QHTELALKYVKRAL 1004
+ REL D ++ +L Y+ + A+ + L
Sbjct: 113 S-RELN-DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170
Query: 1005 YLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASY 1064
L+ + N+ LGN A+ + L + D +Y
Sbjct: 171 SLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAY 226
Query: 1065 HAIAIALSLMEAYPLSVQHEQTTLQILR 1092
+ A + + + ++ + TL + R
Sbjct: 227 SNLGNAYIFLGEFETASEYYKKTLLLAR 254
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 4e-20
Identities = 35/224 (15%), Positives = 67/224 (29%), Gaps = 30/224 (13%)
Query: 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG 949
SA +L + G V++ A+ V + + YS L ++
Sbjct: 2 SASCLELALEGERLCKSGDCRAGVSFFEAAVQ----VGTEDLKTLSAIYSQLGNAYFYLH 57
Query: 950 DFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 1009
D+ +A Y L + R +G D K+ G+L L + + A+ +R L +
Sbjct: 58 DYAKALEYHHHDLTLA-RTIG-DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE 115
Query: 1010 TCGPSHPNTAATYINVAMMEEGLGNVHV--------------------ALRYLHKALKCN 1049
A N+ + G A+ + L
Sbjct: 116 L--NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLV 173
Query: 1050 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 1093
L D ++ + L+ + +V + L I +
Sbjct: 174 TAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 1e-21
Identities = 32/209 (15%), Positives = 69/209 (33%), Gaps = 26/209 (12%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
G A+ Y L ++ A + L L G F++A I ++ L +
Sbjct: 98 YLGDYNKAMQYHKHDLTLAKSMND--RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTL 155
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRL-----------------QHTELALKYVKRALYLL 1007
R+LG D ++ +L Y+ + A+++ + L L+
Sbjct: 156 A-RQLG-DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213
Query: 1008 HLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAI 1067
N+ LG+ A+ + + L+ + D + +
Sbjct: 214 RDLGD--RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG--DRAAERRANSNL 269
Query: 1068 AIALSLMEAYPLSVQHEQTTLQILRAKLG 1096
+ + + + +H + TL + +LG
Sbjct: 270 GNSHIFLGQFEDAAEHYKRTLALAV-ELG 297
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 97.8 bits (244), Expect = 3e-21
Identities = 42/185 (22%), Positives = 73/185 (39%), Gaps = 8/185 (4%)
Query: 906 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 965
K L AV + + L + + A L Y GDF A + Q+ L I
Sbjct: 196 KEALTRAVEFYQENLKLMRDLGD--RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA 253
Query: 966 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINV 1025
RE G D ++ +L + L E A ++ KR L L + G A + ++
Sbjct: 254 -REFG-DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL-ALAVELG-EREVEAQSCYSL 309
Query: 1026 AMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 1085
L + A+ Y ++ L Q L D I A + ++ A S + + ++++ +
Sbjct: 310 GNTYTLLHEFNTAIEYHNRHLAIAQEL--GDRIGEARACWSLGNAHSAIGGHERALKYAE 367
Query: 1086 TTLQI 1090
LQ+
Sbjct: 368 QHLQL 372
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 95.4 bits (238), Expect = 1e-20
Identities = 40/216 (18%), Positives = 71/216 (32%), Gaps = 42/216 (19%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
+ G V + A+ R + YS L ++ GD+N+A Y + L +
Sbjct: 60 NAGDCRAGVAFFQAAIQ----AGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL 115
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 1024
+ + D KS G+L + + A +R L L G + N
Sbjct: 116 A-KSMN-DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHL-TLARQLG-DRLSEGRALYN 171
Query: 1025 VAMMEEGLGNVHV------------------------ALRYLHKALKCNQRLLGPDHIQT 1060
LGNV+ A+ + + LK + L D
Sbjct: 172 -------LGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDL--GDRGAQ 222
Query: 1061 AASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 1096
+ + L+ + +++H Q L+I R + G
Sbjct: 223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAR-EFG 257
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 4e-19
Identities = 35/209 (16%), Positives = 71/209 (33%), Gaps = 26/209 (12%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD-------------- 950
G+ ++A + L + A L V + G
Sbjct: 138 VMGRFDEAAICCERHLTLARQLGD--RLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDV 195
Query: 951 ---FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 1007
+A + Q+ L + R+LG D ++ G+L YY L + A+++ + L +
Sbjct: 196 KEALTRAVEFYQENLKLM-RDLG-DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERL-RI 252
Query: 1008 HLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAI 1067
G N+ LG A + + L L + A S +++
Sbjct: 253 AREFG-DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL--GEREVEAQSCYSL 309
Query: 1068 AIALSLMEAYPLSVQHEQTTLQILRAKLG 1096
+L+ + ++++ L I + +LG
Sbjct: 310 GNTYTLLHEFNTAIEYHNRHLAIAQ-ELG 337
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 1e-17
Identities = 29/143 (20%), Positives = 48/143 (33%), Gaps = 6/143 (4%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
G + A+ + + L G A S L G F A + ++ L +
Sbjct: 235 LLGDFQAAIEHHQERLRIAREF-G-DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 1024
ELG + +S L Y L A++Y R L + G A +
Sbjct: 293 A-VELG-EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL-AIAQELG-DRIGEARACWS 348
Query: 1025 VAMMEEGLGNVHVALRYLHKALK 1047
+ +G AL+Y + L+
Sbjct: 349 LGNAHSAIGGHERALKYAEQHLQ 371
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 5e-17
Identities = 22/166 (13%), Positives = 44/166 (26%), Gaps = 8/166 (4%)
Query: 928 GPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFY 987
GP M++ + S V G T
Sbjct: 1 GPLGSMSSLSASAENVSSLGLGSGGGGTNSHDGNSQQ--GSGSDGGSSMCLELALEGERL 58
Query: 988 YRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 1047
+ + + A+ +A Y + LG+ + A++Y L
Sbjct: 59 CNAGDCRAGVAFFQAAIQA----GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT 114
Query: 1048 CNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 1093
+ + D + A S + L +M + + + L + R
Sbjct: 115 LAKSM--NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQ 158
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 8e-04
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 8/66 (12%)
Query: 902 TALDKGKLEDAVTYGTKALA---KLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQ 958
T + A+ Y + LA +L A A L G +A Y
Sbjct: 312 TYTLLHEFNTAIEYHNRHLAIAQEL-----GDRIGEARACWSLGNAHSAIGGHERALKYA 366
Query: 959 QKALDI 964
++ L +
Sbjct: 367 EQHLQL 372
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 91.4 bits (228), Expect = 3e-21
Identities = 37/166 (22%), Positives = 63/166 (37%), Gaps = 7/166 (4%)
Query: 931 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRL 990
A+ L Y G+F A I ++ L I +E G D +Y +L Y L
Sbjct: 5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA-KEFG-DKAAERIAYSNLGNAYIFL 62
Query: 991 QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050
E A +Y K+ L L A + ++ L + A+ Y K L Q
Sbjct: 63 GEFETASEYYKKTLLLARQLKD--RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 120
Query: 1051 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 1096
L D I + ++ A + + + ++ + L+I R ++G
Sbjct: 121 EL--KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR-EVG 163
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 1e-10
Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 4/122 (3%)
Query: 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 1031
+++G+L +Y L + A+ ++ L L+ G Y N+
Sbjct: 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL-LIAKEFG-DKAAERIAYSNLGNAYIF 61
Query: 1032 LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091
LG A Y K L ++L D A S +++ +L++ Y ++ + L I
Sbjct: 62 LGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 119
Query: 1092 RA 1093
+
Sbjct: 120 QE 121
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 96.0 bits (239), Expect = 6e-21
Identities = 40/225 (17%), Positives = 82/225 (36%), Gaps = 22/225 (9%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
D+ + +A+ Y +A +L V A + +A YH + + + +ALDI
Sbjct: 113 DQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDI 170
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 1024
+ T++S +A Y +H + AL +++ AL L + A + +N
Sbjct: 171 YQNHPL-YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI--QNDRFIAISLLN 227
Query: 1025 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHE 1084
+A + G+ +A+ + KA K ++ + ++ L + Q
Sbjct: 228 IANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL---PKVLFGLSWTLCKAGQTQKAFQFI 284
Query: 1085 QTTLQILR--------------AKLGPDDLRTQDAAAWLEYFESK 1115
+ L + + + + + L YFE K
Sbjct: 285 EEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK 329
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 90.6 bits (225), Expect = 4e-19
Identities = 28/168 (16%), Positives = 65/168 (38%), Gaps = 9/168 (5%)
Query: 937 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELA 996
+ + + ++ +A Y ++A + D + + + +A YY ++ T ++
Sbjct: 103 SLFFRGMYEFDQKEYVEAIGYYREAEKEL-PFVS-DDIEKAEFHFKVAEAYYHMKQTHVS 160
Query: 997 LKYVKRAL--YLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054
+ ++ +AL Y H T + +A + + AL +L AL+ +
Sbjct: 161 MYHILQALDIYQNHPLY---SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI-- 215
Query: 1055 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRT 1102
+ A S IA + ++V+H Q ++ R K+ +
Sbjct: 216 QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 76.8 bits (189), Expect = 2e-14
Identities = 22/154 (14%), Positives = 43/154 (27%), Gaps = 12/154 (7%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
G + AV + KA L+ L G +A + ++ LD
Sbjct: 234 RSGDDQMAVEHFQKAAKVSREKVPDLL---PKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 1024
+ + + + L Y ++ H A +
Sbjct: 291 ITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL---------HAYIEACARS 341
Query: 1025 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI 1058
A + E + A + K LK + +L + +
Sbjct: 342 AAAVFESSCHFEQAAAFYRKVLKAQEDILKGECL 375
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 76.0 bits (187), Expect = 3e-14
Identities = 29/196 (14%), Positives = 56/196 (28%), Gaps = 14/196 (7%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
D + A+ + AL + + R A + +A +GD A + QKA +
Sbjct: 194 DFKHYDKALPHLEAALELAMDI--QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV 251
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 1024
+ K L+ + T+ A ++++ L + +
Sbjct: 252 SRE---KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQA 308
Query: 1025 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHE 1084
V +H L Y K H A + A + +
Sbjct: 309 VYKETVDERKIHDLLSYFEKKN---------LHAYIEACARSAAAVFESSCHFEQAAAFY 359
Query: 1085 QTTLQILRAKLGPDDL 1100
+ L+ L + L
Sbjct: 360 RKVLKAQEDILKGECL 375
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 67.9 bits (166), Expect = 9e-12
Identities = 28/197 (14%), Positives = 62/197 (31%), Gaps = 12/197 (6%)
Query: 903 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKAL 962
+ + + DA + + + + YSL+ D+ +
Sbjct: 22 MIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIY--YSLMCFRHQLMLDYLEPGKTYGNRP 79
Query: 963 DINERELGLDHPDTMKS-------YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 1015
+ E ++ P + ++ + + A+ Y + A L
Sbjct: 80 TVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDD 137
Query: 1016 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLME 1075
A + VA + HV++ ++ +AL Q I+T S IA +
Sbjct: 138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHP-LYSIRTIQSLFVIAGNYDDFK 196
Query: 1076 AYPLSVQHEQTTLQILR 1092
Y ++ H + L++
Sbjct: 197 HYDKALPHLEAALELAM 213
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 94.5 bits (235), Expect = 2e-20
Identities = 25/188 (13%), Positives = 65/188 (34%), Gaps = 7/188 (3%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
D+ + A+ + KA +KL+ V A + ++ Y+ + Y ++A +I
Sbjct: 115 DQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEI 172
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 1024
+E + ++ + A + L+ E A+ + ++A + T N
Sbjct: 173 Y-KEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQPQLMGRTLYN 229
Query: 1025 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHE 1084
+ + + A+ Y +A+ + +Y I + + ++
Sbjct: 230 IGLCKNSQSQYEDAIPYFKRAIAVFEES--NILPSLPQAYFLITQIHYKLGKIDKAHEYH 287
Query: 1085 QTTLQILR 1092
+ +
Sbjct: 288 SKGMAYSQ 295
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 92.6 bits (230), Expect = 1e-19
Identities = 26/173 (15%), Positives = 57/173 (32%), Gaps = 5/173 (2%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
+ ++ Y +A Y+ +SL A + A + QKA +
Sbjct: 155 YMKQTYFSMDYARQAYEIYKEHEA-YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSM 213
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 1024
++ ++ + E A+ Y KRA+ + + P+ Y
Sbjct: 214 A-EAEK-QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES--NILPSLPQAYFL 269
Query: 1025 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAY 1077
+ + LG + A Y K + +Q+ ++ ++ ++ EA
Sbjct: 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI 322
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 88.0 bits (218), Expect = 3e-18
Identities = 16/153 (10%), Positives = 49/153 (32%), Gaps = 5/153 (3%)
Query: 938 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELAL 997
+ ++ A + +KA + D + + + ++ YY ++ T ++
Sbjct: 106 NFFRGMYELDQREYLSAIKFFKKAESKL-IFVK-DRIEKAEFFFKMSESYYYMKQTYFSM 163
Query: 998 KYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 1057
Y ++A + + + A L A+ + KA +
Sbjct: 164 DYARQAYEIYKEHEA-YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQP 220
Query: 1058 IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090
+ + I + + Y ++ + + + +
Sbjct: 221 QLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 72.2 bits (177), Expect = 5e-13
Identities = 25/154 (16%), Positives = 54/154 (35%), Gaps = 11/154 (7%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
+ + EDA+ Y +A+A V AY L+ + Y G ++A Y K +
Sbjct: 236 SQSQYEDAIPYFKRAIA--VFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY 293
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 1024
+++ + + + L + + + +++ + + + I+
Sbjct: 294 SQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---------LYADLEDFAID 344
Query: 1025 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI 1058
VA N A Y K + Q + G +
Sbjct: 345 VAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSL 378
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 1e-09
Identities = 17/148 (11%), Positives = 47/148 (31%), Gaps = 3/148 (2%)
Query: 946 YHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALY 1005
+ L+I++++ L ++ + A+K+ K+A
Sbjct: 72 LEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAES 131
Query: 1006 LLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYH 1065
L A + ++ + + ++ Y +A + + +I+ +
Sbjct: 132 KLIFV--KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA-YNIRLLQCHS 188
Query: 1066 AIAIALSLMEAYPLSVQHEQTTLQILRA 1093
A ++ Y ++ H Q + A
Sbjct: 189 LFATNFLDLKQYEDAISHFQKAYSMAEA 216
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 4e-08
Identities = 20/158 (12%), Positives = 44/158 (27%), Gaps = 15/158 (9%)
Query: 949 GDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH 1008
A +++ ++ ++ + Y L F + L L R
Sbjct: 26 FSIPDAEYLRREIKQELDQ---MEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR 82
Query: 1009 L--------TCGPSHPNTAATY--INVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI 1058
L Y M E A+++ KA + D I
Sbjct: 83 LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRI 140
Query: 1059 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 1096
+ A + ++ + M+ S+ + + +I +
Sbjct: 141 EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 81.1 bits (199), Expect = 3e-15
Identities = 93/653 (14%), Positives = 180/653 (27%), Gaps = 193/653 (29%)
Query: 628 NHKIHSETLKSQADGVNGESEKATSASIEARLESRDKENELALKNLLSDEAFARL---KE 684
+H H + + + + + +D ++ K++LS E + K+
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMP--KSILSKEEIDHIIMSKD 59
Query: 685 SETGLH------CKSLEELID------LSHNY-------YVEVALPKLVTDFGSLELSPV 725
+ +G EE++ L NY E P ++T + +
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 726 --DGRTLTDFMHTRGLQMRSLGHVVKLSEKLSHVQS---LCIHEM-----------IVRA 769
D + + +R L +KL + L ++ + I + + +
Sbjct: 120 YNDNQVFAKYNVSR------LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173
Query: 770 FKHIIQAVIS------AVGNTQRMAVSIAAALNLML-----GVHESDGL-NKSHNVHPLV 817
+K +Q + + N + L+ SD N +H +
Sbjct: 174 YK--VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 818 WRWLELFLMKRYEWDLNGLNFKDVRKFAILRGL---CHKVGIELV-SRDFDMDSPSPFRK 873
L K YE L L +V+ C K+ L+ +R
Sbjct: 232 AELRRLLKSKPYENCL--LVLLNVQNAKAWNAFNLSC-KI---LLTTRF----------- 274
Query: 874 IDVVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRM 933
V + S L + K L + + L + V P
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEV---KSLLLKYLDCRPQDLPREVLTTNPR--- 328
Query: 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALD--INERELGLDH--PDTMKS-YGDLAVF-- 986
S++A + ++ D E L+ P + + L+VF
Sbjct: 329 ---RLSIIAESIRD--GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 987 -----------------YY-------RLQHTELALKYVKRALYLLHLTCGPSHPNTAATY 1022
+L L K K + + + Y
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-----------SIY 432
Query: 1023 INVAMMEEGLGNVHVAL--RY-LHKALKCNQRLLGPD------HIQTAASYHAIAIALSL 1073
+ + + E +H ++ Y + K + + HI +H L
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI----GHH-----LKN 483
Query: 1074 MEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDAS 1133
+E E+ TL R D R +L E K R +
Sbjct: 484 IE------HPERMTL--FRMVF--LDFR------FL---EQK-----------IRHDSTA 513
Query: 1134 IASKGHLSVSDLL-------DYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQD 1179
+ G S+ + L YI + R V+ + ++ K++ N
Sbjct: 514 WNASG--SILNTLQQLKFYKPYICDNDPKYERLVNAILD--FLPKIEENLICS 562
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 70.3 bits (171), Expect = 6e-12
Identities = 104/702 (14%), Positives = 192/702 (27%), Gaps = 251/702 (35%)
Query: 486 PLFQSIE----LEQPEGGANALNINSLRLLIHETTTLEDNKPAPNLQNLEREELNASQMF 541
+ E + + ++ L TL K Q F
Sbjct: 44 SILSKEEIDHIIMSKD------AVSGTLRLF---WTLLS-KQE-----------EMVQKF 82
Query: 542 VERLLE-------ESIAKLEEEKPE--REHFVRWELGACWIQHLQDQKNAEKDKKLS--- 589
VE +L I E+ +P ++ Q + + + K +
Sbjct: 83 VEEVLRINYKFLMSPIKT-EQRQPSMMTRMYIE--------QRDRLYNDNQVFAKYNVSR 133
Query: 590 KEKAKKLSN--EKAKSE-------MKVEGLGTPLKS------LKNNRKKSE--------- 625
+ KL + + + G G K+ + + + +
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVL--GSG---KTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 626 -GSNHKIHS-----ETLKSQADGVNGESEKATSASIEARLESRDKENELALKNLLSDEAF 679
+ + + + L Q D N S S++I+ R+ S E L+ LL + +
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDP-NWTSRSDHSSNIKLRIHSIQAE----LRRLLKSKPY 243
Query: 680 ARLKESETGLHCKSLEELIDLSHNYYVEVALPKLVTDFGSLELSPVDGRTL--------T 731
C L+ L + V K F + + L T
Sbjct: 244 EN---------C-----LLVLLN-----VQNAKAWNAFN------LSCKILLTTRFKQVT 278
Query: 732 DFMHTRGLQMRSLGHVVKLSEKLSHVQSLCIHEMIVRAFKHIIQAVISAVGNTQRMAVSI 791
DF+ SL H S L+ + ++++ Q + V T +SI
Sbjct: 279 DFLSAATTTHISLDH---HSMTLTPDEVK---SLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 792 AAALNLMLGVHESDGLNKSHNVHPLVW-RWLELF---LMKRYEWDLNGLNFKDVRK---- 843
A + + W W + L E LN L + RK
Sbjct: 333 IAES-----IRD----------GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 844 FAILRGLCHKVGIELVSRDFDMDSPSPFRKIDVVSLVPVHKQAACSSADGRQLLES--SK 901
++ F + P ++SL+ +D ++
Sbjct: 378 LSV----------------FPPSAHIP---TILLSLI----WFDVIKSDVMVVVNKLHKY 414
Query: 902 TALDKGKLEDAVTYGTKALAKLVAVCGPY--HRMTAGAYSLLAVVLYHTGDFNQATIYQQ 959
+ ++K E ++ + L V + Y HR Y++
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI------------------P 456
Query: 960 KALDINERELGLDHPDTMKSYGDLAVFY----YRLQHTELALKYVK-RALYL-------- 1006
K D + +L + D Y FY + L++ E + R ++L
Sbjct: 457 KTFDSD--DLIPPYLD---QY-----FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 1007 -----LHLTCGPSHPNTAAT------YI--NVAMMEEGLGNVHVALRYLHKALKCNQRLL 1053
S NT YI N E + + L +L K + L+
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI---LDFLP---KIEENLI 560
Query: 1054 GPDH---IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 1092
+ ++ IAL E+ Q+ R
Sbjct: 561 CSKYTDLLR---------IALM----AEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.8 bits (162), Expect = 7e-11
Identities = 94/702 (13%), Positives = 173/702 (24%), Gaps = 249/702 (35%)
Query: 174 GEMSHAFPKLSSFYEFFSLSHLTPPLQFIRKAPKRRVEEISPDDHLLSLDVKLCNGKMVN 233
GE + + + LS F+ + V++ P L ++
Sbjct: 12 GEHQYQYKDI--------LSVFEDA--FVDNFDCKDVQD-MPKSILSKEEIDHIIMSKDA 60
Query: 234 VEACRKGFYSVGKQRILCHNIVDLLGQLSRAFDNAYNELMNAFSERNKFGNLPY----GF 289
V + F+++ ++ +V + Y LM+ + ++
Sbjct: 61 VSGTLRLFWTLLSKQ---EEMVQKF--VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 290 RANTWLIPPIAAQSPSVFPPLP----------------AEDEAWGGNGGGLGRDGKSDL- 332
R + VF G LG GK+ +
Sbjct: 116 RDRLY-------NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS-GKTWVA 167
Query: 333 ----------------IPWAN--------------EFLFVASMPCKTAEERQ-------- 354
I W N + L P T+
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 355 --IRDRKAFLLHN------LFV--DVAIFRAIKAVHHVMGKPELIYPSNCKILYTEIIGG 404
I+ LL + L V +V +A A + +CKIL T
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL-----------SCKILLTT---- 272
Query: 405 LRIAIMKDASNACCKVDTKIDGSQATGVDKNNLVERNLLKGITADENTAAHDVATLGVVN 464
+ + + T ++ + +T DE ++
Sbjct: 273 ------RFKQVT-----DFLSAATTT-----HISLDHHSMTLTPDE--------VKSLL- 307
Query: 465 VRYCGYIAVVKVQE--RENKKVGPLFQSIELEQPEGGANALNINSLRLLIHETTTLEDNK 522
++Y + Q+ RE P SI I + T +
Sbjct: 308 LKYLD----CRPQDLPREVLTTNPRRLSI-------------IA--ESIRDGLATWD--- 345
Query: 523 PAPNLQNLEREELNASQMFVERLLEESIAKLEEEKPEREHFVRWE------------LGA 570
N +++ ++L ++E S+ LE + R+ F R L
Sbjct: 346 ---NWKHVNCDKLT-------TIIESSLNVLEPAE-YRKMFDRLSVFPPSAHIPTILLSL 394
Query: 571 CW-----------IQHLQDQKNAEKDKK--------LSKEKAKKLSNEKAKSEMKVEGLG 611
W + L EK K + E KL NE A V+
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 612 TPLKSLKNNRKKSEGSN---HKI--HSETLKSQADGVNGESEKATSASIEARLESRDKEN 666
P ++ I H LK R
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHH---LK------------------NIEHPERMTL- 492
Query: 667 ELALKNLLSDEAF--ARLKESETGLHCKS--LEELIDLSHNYYVEVALPKLVTDFGSLEL 722
+ + D F +++ T + L L L +Y + D
Sbjct: 493 ---FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL--KFY-----KPYICD-----N 537
Query: 723 SPVDGRTLTDFMHTRGLQMRSLGHVVKLSEKLSHVQSLCIHE 764
P R + + + + + S+ ++ + E
Sbjct: 538 DPKYERLVNAILDF----LPKIEENLICSKYTDLLRIALMAE 575
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 2e-04
Identities = 98/673 (14%), Positives = 184/673 (27%), Gaps = 189/673 (28%)
Query: 12 NEKKKKEEKVLPVVLDITV------NLPDDTRVILKGISTDRIID-------VRRLLSV- 57
E + + + +L V D V ++ D + IL D II RL
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 58 ---NTETCSI-------TNF-----SLSHEIRGPRLKDAV----------DVAALKP--- 89
E N+ + E R P + + D
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 90 ----CVLSLTEEDFDEEGAAAHVRRVLDIVACTTSFGPCGFDAGKNVPDSKSAKKTTAKN 145
L L + A +R +++ G G GK A +
Sbjct: 132 SRLQPYLKLRQ-------ALLELRPAKNVLI----DGVLGS--GKTW----VALDV-CLS 173
Query: 146 EKDKQSQPPSSPQSKNS------KSSNDVTVDGDGEMSHAF-PKLSSFYEFFSLSHLTPP 198
K Q K N + + EM ++ + S
Sbjct: 174 YK---------VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 199 LQF--IRKAPKRRVEEISPDDHLLSLD-VKLCNGKMVNV--EACRKGFYSVGKQRILC-- 251
L+ I+ +R ++ ++ LL L V N K N +C+ IL
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNV--QNAKAWNAFNLSCK----------ILLTT 272
Query: 252 --HNIVDLLGQLSRAFDNAYNELMNAFSERNKFGNLPYGFRANTWLIPPIAAQSPSVFPP 309
+ D L + + + + L +L P P
Sbjct: 273 RFKQVTDFLSAATT-THISLDHHSMTLTPDEVKSLL-----LK-YL-----DCRPQDLPR 320
Query: 310 LPAEDEAWGGNG---GGLGRDGKSDLIPWANEFLFVASMPCKTAEERQIRDRKAFLLHNL 366
E N + + L W N + V T E + + +
Sbjct: 321 -----EVLTTNPRRLSIIAESIRDGLATWDN-WKHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 367 FVDVAIFRAIKAVHHVMGKPELIYPSNCKILYTEIIGGLRIAIMKDASNACCKVDTKIDG 426
F +++F + H I +++ ++I + ++
Sbjct: 375 FDRLSVFP--PSAH--------IPTILLSLIWFDVIKSDVMVVVNKLHKYSL-------- 416
Query: 427 SQATGVDKNNLVERNLLKGI------TADENTAAHDVATLGVVNVRYCGYIAVVKVQERE 480
V+K + I + A H +V+ Y + +
Sbjct: 417 -----VEKQPKESTISIPSIYLELKVKLENEYALHRS----IVD-HY------NIPKTFD 460
Query: 481 NKKVGPL------FQSI-----ELEQPEGGANA----LNINSLRL-LIHETTTLEDNKPA 524
+ + P + I +E PE L+ L + H++T +
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520
Query: 525 PN-LQNLE--REELNASQMFVERLLEESIAKLEEEKPEREHFVRWELGACWIQ-HLQDQK 580
N LQ L+ + + + ERL+ + L K E E+ + + ++ L +
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLVNAILDFL--PKIE-ENLICSKY-TDLLRIALMAED 576
Query: 581 NA---EKDKKLSK 590
A E K++ +
Sbjct: 577 EAIFEEAHKQVQR 589
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 2e-13
Identities = 30/194 (15%), Positives = 62/194 (31%), Gaps = 12/194 (6%)
Query: 903 ALDKGKLEDAVTYGTKALAKL---VAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQ 959
A+ K+ +A + KA L P + A Y+ AV + QA
Sbjct: 1 AIAAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYL 60
Query: 960 KALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTA 1019
+ + + K++ + LQ A++Y+++A + P+TA
Sbjct: 61 QEAEAHA-NNR-SLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMY---VENGTPDTA 115
Query: 1020 A-TYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYP 1078
A + E ++ A+ +A + Q A + L + +
Sbjct: 116 AMALDRAGKLME-PLDLSKAVHLYQQAAAVFENE--ERLRQAAELIGKASRLLVRQQKFD 172
Query: 1079 LSVQHEQTTLQILR 1092
+ Q + +
Sbjct: 173 EAAASLQKEKSMYK 186
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 8e-10
Identities = 28/195 (14%), Positives = 59/195 (30%), Gaps = 17/195 (8%)
Query: 883 HKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLA 942
H + ++ D ++ +AV Y KA + V A A
Sbjct: 66 HANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASV--MYVENGTPDTAAMALDRAG 123
Query: 943 VVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKR 1002
L D ++A Q+A + E E + G + R Q + A +++
Sbjct: 124 K-LMEPLDLSKAVHLYQQAAAVFENEE--RLRQAAELIGKASRLLVRQQKFDEAAASLQK 180
Query: 1003 ALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAA 1062
+ ++P I +++ + A + + ++ G +
Sbjct: 181 EKSMYKEM--ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSI-PGFSGSEDCAALE 237
Query: 1063 SYHAIAIALSLMEAY 1077
L++AY
Sbjct: 238 ---------DLLQAY 243
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 61.1 bits (148), Expect = 1e-09
Identities = 24/187 (12%), Positives = 51/187 (27%), Gaps = 11/187 (5%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
+ +LE A + +H A A+ ++L +A Y +KA +
Sbjct: 48 NAKQLEQAKDAYLQEAEAHANNRSLFH--AAKAFEQAGMMLKDLQRMPEAVQYIEKASVM 105
Query: 965 NERELGLDHPDTM-KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYI 1023
PDT + L ++ A+ ++A A
Sbjct: 106 YVE---NGTPDTAAMALDRAGKLMEPLDLSK-AVHLYQQAAA--VFENEERLRQAAELIG 159
Query: 1024 NVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQH 1083
+ + A L K + + ++ A + Y + +
Sbjct: 160 KASRLLVRQQKFDEAAASLQKEKSMYKEM--ENYPTCYKKCIAQVLVQLHRADYVAAQKC 217
Query: 1084 EQTTLQI 1090
+ + I
Sbjct: 218 VRESYSI 224
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 74.8 bits (183), Expect = 2e-13
Identities = 50/225 (22%), Positives = 92/225 (40%), Gaps = 32/225 (14%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
++G +E+AV KAL P A A+S LA VL G +A ++ ++A+ I
Sbjct: 21 EQGNIEEAVRLYRKALE-----VFPEF---AAAHSNLASVLQQQGKLQEALMHYKEAIRI 72
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 1024
+ P +Y ++ +Q + AL+ RA+ + +P A + N
Sbjct: 73 S--------PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSN 116
Query: 1025 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHE 1084
+A + + GN+ A+ ALK PD +Y +A L ++ + +
Sbjct: 117 LASIHKDSGNIPEAIASYRTALKLK-----PDF---PDAYCNLAHCLQIVCDWTDYDERM 168
Query: 1085 QTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRK 1129
+ + I+ +L + L + + Y S F + A R+G
Sbjct: 169 KKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLC 213
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 61.0 bits (147), Expect = 3e-09
Identities = 30/156 (19%), Positives = 63/156 (40%), Gaps = 24/156 (15%)
Query: 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTE 994
A + + LA + G+ +A +KAL++ P+ ++ +LA + +
Sbjct: 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF--------PEFAAAHSNLASVLQQQGKLQ 60
Query: 995 LALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054
AL + K A+ + P A Y N+ + + +V AL+ +A++ N
Sbjct: 61 EALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN----- 107
Query: 1055 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090
P A ++ +A P ++ +T L++
Sbjct: 108 PAF---ADAHSNLASIHKDSGNIPEAIASYRTALKL 140
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 7e-04
Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 19/119 (15%)
Query: 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 1031
H D S +LA + E A++ ++AL + P AA + N+A + +
Sbjct: 7 THAD---SLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQ 55
Query: 1032 LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090
G + AL + +A++ + P A +Y + L M+ ++Q +QI
Sbjct: 56 QGKLQEALMHYKEAIRIS-----PTF---ADAYSNMGNTLKEMQDVQGALQCYTRAIQI 106
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 6e-13
Identities = 29/168 (17%), Positives = 63/168 (37%), Gaps = 25/168 (14%)
Query: 904 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 963
+ G + A Y + A + Y + L VV ++ D A + Q AL
Sbjct: 452 MQLGNILLANEYLQSSYA----LF-QYD---PLLLNELGVVAFNKSDMQTAINHFQNALL 503
Query: 964 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYI 1023
+ ++ + ++ +L Y +L+ + A+ + + L L N A +
Sbjct: 504 LVKKTQSNE-KPWAATWANLGHAYRKLKMYDAAIDALNQGLLL--------STNDANVHT 554
Query: 1024 NVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIAL 1071
+A++ +A+ +LH++L + P+ + + AL
Sbjct: 555 AIALVYLHKKIPGLAITHLHESLAIS-----PNE---IMASDLLKRAL 594
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 5e-12
Identities = 26/187 (13%), Positives = 59/187 (31%), Gaps = 25/187 (13%)
Query: 904 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 963
L K+ +A Y +K+ A+ A G+ +QA A
Sbjct: 384 LCVNKISEARRYFSKSST--------MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR 435
Query: 964 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYI 1023
+ T Y L + + +L + LA +Y++ + L
Sbjct: 436 LF--------QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--------FQYDPLLLN 479
Query: 1024 NVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQH 1083
+ ++ ++ A+ + AL ++ + A + + A ++ Y ++
Sbjct: 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT-WANLGHAYRKLKMYDAAIDA 538
Query: 1084 EQTTLQI 1090
L +
Sbjct: 539 LNQGLLL 545
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 5e-12
Identities = 34/186 (18%), Positives = 62/186 (33%), Gaps = 25/186 (13%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
+G+ + A++ T A Y L + G+ A Y Q + +
Sbjct: 419 IEGEHDQAISAYTTAAR-----LFQGT---HLPYLFLGMQHMQLGNILLANEYLQSSYAL 470
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 1024
+L V + + A+ + + AL LL + AAT+ N
Sbjct: 471 F--------QYDPLLLNELGVVAFNKSDMQTAINHFQNAL-LLVKKTQSNEKPWAATWAN 521
Query: 1025 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHE 1084
+ L A+ L++ L L + A + AIA+ + L++ H
Sbjct: 522 LGHAYRKLKMYDAAIDALNQGLL-----LSTND---ANVHTAIALVYLHKKIPGLAITHL 573
Query: 1085 QTTLQI 1090
+L I
Sbjct: 574 HESLAI 579
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 67.9 bits (166), Expect = 2e-11
Identities = 23/188 (12%), Positives = 58/188 (30%), Gaps = 36/188 (19%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
+ + D + TK L PY+ Y L L+ +G+ N+ + +D
Sbjct: 317 VRSRFIDVLAITTKILEI-----DPYN---LDVYPLHLASLHESGEKNKLYLISNDLVDR 368
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 1024
+ P+ ++ + ++Y + A +Y ++ + P +I
Sbjct: 369 H--------PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--------DPQFGPAWIG 412
Query: 1025 VAMMEEGLGNVHVALRYLHKALKC-NQRL-LGPDHIQTAASYHAIAIALSLMEAYPLSVQ 1082
+ +A+ L Y + + + L+ +
Sbjct: 413 -------FAHSFAIEGEHDQAISAYTTAARLFQGT---HLPYLFLGMQHMQLGNILLANE 462
Query: 1083 HEQTTLQI 1090
+ Q++ +
Sbjct: 463 YLQSSYAL 470
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 4e-08
Identities = 18/144 (12%), Positives = 40/144 (27%), Gaps = 24/144 (16%)
Query: 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT 993
++ A L+ F K L+I+ + D + +
Sbjct: 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-----YNLDVYPLHLAS---LHESGEK 355
Query: 994 ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 1053
+ HP A T++ V + + + A RY K+ +
Sbjct: 356 NKLYLISNDLVDR--------HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD---- 403
Query: 1054 GPDHIQTAASYHAIAIALSLMEAY 1077
P ++ A + ++ +
Sbjct: 404 -PQF---GPAWIGFAHSFAIEGEH 423
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 71.9 bits (176), Expect = 6e-13
Identities = 26/205 (12%), Positives = 60/205 (29%), Gaps = 8/205 (3%)
Query: 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQAT 955
L++ S+ +G L+ A KA + M + A +L+ ++A
Sbjct: 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 155
Query: 956 IYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 1015
+ +++ ++ L + A + R LL
Sbjct: 156 ASARSGIEVLSS---YQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG-NGKYHS 211
Query: 1016 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLME 1075
+ + + G+ A +L + ++ + IA A L+
Sbjct: 212 DWISNANKVRVIYWQMTGDKAAAANWLRHT----AKPEFANNHFLQGQWRNIARAQILLG 267
Query: 1076 AYPLSVQHEQTTLQILRAKLGPDDL 1100
+ + + + R+ DL
Sbjct: 268 EFEPAEIVLEELNENARSLRLMSDL 292
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 68.9 bits (168), Expect = 5e-12
Identities = 20/172 (11%), Positives = 47/172 (27%), Gaps = 7/172 (4%)
Query: 903 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKAL 962
KG+L ++ + +A + + +L+ G A Q+KA
Sbjct: 63 LHCKGELTRSLALMQQTEQ--MARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAF 120
Query: 963 DINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATY 1022
+ + P A + + A + + +L
Sbjct: 121 QLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS---SYQPQQQLQCL 177
Query: 1023 INVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLM 1074
+ G++ A L++ G H ++ + + + M
Sbjct: 178 AMLIQCSLARGDLDNARSQLNRLENLLGN--GKYHSDWISNANKVRVIYWQM 227
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 64.2 bits (156), Expect = 2e-10
Identities = 19/185 (10%), Positives = 46/185 (24%), Gaps = 5/185 (2%)
Query: 940 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKY 999
L A V + G+ ++A + AL E + + L + +L
Sbjct: 19 LRAQVAINDGNPDEAERLAKLAL---EELPPGWFYSRIVATSVLGEVLHCKGELTRSLAL 75
Query: 1000 VKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ 1059
+++ + + I + + G + A KA +
Sbjct: 76 MQQTEQMARQ--HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM 133
Query: 1060 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQ 1119
A L + ++ +++L + L+
Sbjct: 134 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNA 193
Query: 1120 QEAAR 1124
+
Sbjct: 194 RSQLN 198
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 3e-06
Identities = 25/154 (16%), Positives = 49/154 (31%), Gaps = 7/154 (4%)
Query: 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQ 953
+ L + +L +G L++A + + L+ + + A + + TGD
Sbjct: 175 QCLAMLIQCSLARGDLDNARSQLNRLEN-LLGNGKYHSDWISNANKVRVIYWQMTGDKAA 233
Query: 954 ATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 1013
A L + ++ + ++A L E A ++
Sbjct: 234 A----ANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLM 289
Query: 1014 SHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 1047
S N + + + G A R L ALK
Sbjct: 290 SDLNRN--LLLLNQLYWQAGRKSDAQRVLLDALK 321
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 8e-13
Identities = 34/179 (18%), Positives = 59/179 (32%), Gaps = 29/179 (16%)
Query: 904 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 963
+ A + ++AL+ P + VV + G++ A + AL+
Sbjct: 170 GLTNNSKLAERFFSQALS-----IAPED---PFVMHEVGVVAFQNGEWKTAEKWFLDALE 221
Query: 964 IN-ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATY 1022
+ +L +L+ AL Y ++AL L P A+TY
Sbjct: 222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--------IPQNASTY 273
Query: 1023 INVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLM----EAY 1077
+ + +GN A+ Y H AL D S + + + EAY
Sbjct: 274 SAIGYIHSLMGNFENAVDYFHTALGLR-----RDD---TFSVTMLGHCIEMYIGDSEAY 324
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 7e-12
Identities = 32/189 (16%), Positives = 64/189 (33%), Gaps = 29/189 (15%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
+ + + A+ A + + T + A + +AL I
Sbjct: 137 VESEHDQAMAAYFTAAQ-----LMKGC---HLPMLYIGLEYGLTNNSKLAERFFSQALSI 188
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL-HLTCGPSHPNTAATYI 1023
P+ ++ V ++ + A K+ AL + + +
Sbjct: 189 A--------PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLN 240
Query: 1024 NVAMMEEGLGNVHVALRYLHKALKCNQRLL--GPDHIQTAASYHAIAIALSLMEAYPLSV 1081
N LG+V L+ +AL +++ L P + A++Y AI SLM + +V
Sbjct: 241 N-------LGHVCRKLKKYAEALDYHRQALVLIPQN---ASTYSAIGYIHSLMGNFENAV 290
Query: 1082 QHEQTTLQI 1090
+ T L +
Sbjct: 291 DYFHTALGL 299
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 7e-11
Identities = 25/189 (13%), Positives = 47/189 (24%), Gaps = 37/189 (19%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
+ + + K P+H A + L N+ K +D+
Sbjct: 34 YNCDFKMCYKLTSVVMEK-----DPFH---ASCLPVHIGTLVELNKANELFYLSHKLVDL 85
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRL-QHTELALKYVKRALYLLHLTCGPSHPNTAATYI 1023
P S+ + +Y + E A +Y+ +A L +I
Sbjct: 86 Y--------PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL--------EKTYGPAWI 129
Query: 1024 NVAMMEEGLGNVHVALRYLHKALKCNQR--LLGPDHIQTAASYHAIAIALSLMEAYPLSV 1081
G+ +A+ L I + L L+
Sbjct: 130 A-------YGHSFAVESEHDQAMAAYFTAAQLMKGC---HLPMLYIGLEYGLTNNSKLAE 179
Query: 1082 QHEQTTLQI 1090
+ L I
Sbjct: 180 RFFSQALSI 188
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 7e-07
Identities = 18/145 (12%), Positives = 40/145 (27%), Gaps = 25/145 (17%)
Query: 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT 993
LA Y+ DF ++ + H + + L
Sbjct: 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-----FHASCLPVHIGT---LVELNKA 72
Query: 994 ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH-VALRYLHKALKCNQRL 1052
+ + L +P+ ++ V +G+ + A RYL KA
Sbjct: 73 NELFYLSHKLVDL--------YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE--- 121
Query: 1053 LGPDHIQTAASYHAIAIALSLMEAY 1077
+ ++ A + ++ +
Sbjct: 122 --KTY---GPAWIAYGHSFAVESEH 141
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 1e-11
Identities = 31/182 (17%), Positives = 62/182 (34%), Gaps = 32/182 (17%)
Query: 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQAT 955
+E + G E A + + + P + G LL+ + + +++
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQ-----EPDN---TGVLLLLSSIHFQCRRLDRSA 53
Query: 956 IYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 1015
+ A+ N P ++Y +L Y + A+++ + AL L
Sbjct: 54 HFSTLAIKQN--------PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--------K 97
Query: 1016 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLME 1075
P+ YIN+A G++ A++ AL+ N PD + L +
Sbjct: 98 PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-----PDL---YCVRSDLGNLLKALG 149
Query: 1076 AY 1077
Sbjct: 150 RL 151
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 4e-11
Identities = 35/171 (20%), Positives = 65/171 (38%), Gaps = 32/171 (18%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
++G ++ A+ +A+ P+ AY LA L G +A AL +
Sbjct: 249 EQGLIDLAIDTYRRAIE-----LQPHF---PDAYCNLANALKEKGSVAEAEDCYNTALRL 300
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 1024
P S +LA + E A++ ++AL + P AA + N
Sbjct: 301 C--------PTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSN 344
Query: 1025 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLME 1075
+A + + G + AL + +A++ + P A +Y + L M+
Sbjct: 345 LASVLQQQGKLQEALMHYKEAIRIS-----PTF---ADAYSNMGNTLKEMQ 387
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 8e-11
Identities = 39/186 (20%), Positives = 71/186 (38%), Gaps = 32/186 (17%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
G+LE+A KA+ P A A+S L V G+ A + +KA+ +
Sbjct: 147 ALGRLEEAKACYLKAIET-----QPNF---AVAWSNLGCVFNAQGEIWLAIHHFEKAVTL 198
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 1024
+ P+ + +Y +L + + A+ RAL L PN A + N
Sbjct: 199 D--------PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--------SPNHAVVHGN 242
Query: 1025 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHE 1084
+A + G + +A+ +A++ P +Y +A AL + +
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQ-----PHF---PDAYCNLANALKEKGSVAEAEDCY 294
Query: 1085 QTTLQI 1090
T L++
Sbjct: 295 NTALRL 300
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 3e-09
Identities = 37/175 (21%), Positives = 57/175 (32%), Gaps = 36/175 (20%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
G +E AV AL P S L +L G +A KA++
Sbjct: 113 AAGDMEGAVQAYVSALQY-----NPDL---YCVRSDLGNLLKALGRLEEAKACYLKAIET 164
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 1024
P+ ++ +L + LA+ + ++A+ L PN YIN
Sbjct: 165 Q--------PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--------DPNFLDAYIN 208
Query: 1025 VAMMEEGLGNVHVALRYLHKALKCNQRLLG--PDHIQTAASYHAIAIALSLMEAY 1077
LGNV R +A+ R L P+H A + +A
Sbjct: 209 -------LGNVLKEARIFDRAVAAYLRALSLSPNH---AVVHGNLACVYYEQGLI 253
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 7e-07
Identities = 26/130 (20%), Positives = 50/130 (38%), Gaps = 24/130 (18%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
+KG + +A AL P H A + + LA + G+ +A +KAL++
Sbjct: 283 EKGSVAEAEDCYNTALRL-----CPTH---ADSLNNLANIKREQGNIEEAVRLYRKALEV 334
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 1024
P+ ++ +LA + + AL + K A+ + P A Y N
Sbjct: 335 F--------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--------SPTFADAYSN 378
Query: 1025 VAMMEEGLGN 1034
+ + + +
Sbjct: 379 MGNTLKEMQD 388
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 1e-11
Identities = 25/210 (11%), Positives = 62/210 (29%), Gaps = 35/210 (16%)
Query: 890 SADGRQLLESSKTALDKGKLEDAVTYGTKAL--------AKLVAVCGPYHRMTAGAYSLL 941
S D ++L+ A++ G+ AV+Y + + +++ + L
Sbjct: 3 SVD--EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATEL 60
Query: 942 AVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVK 1001
A+ ++++A ++ ++ L P+ + A + AL+ +
Sbjct: 61 ALAYKKNRNYDKAYLFYKELLQKA--------PNNVDCLEACAEMQVCRGQEKDALRMYE 112
Query: 1002 RALYLLHLTCGPSHPNTAATYINVA-MMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT 1060
+ L L + A I + L +K L
Sbjct: 113 KILQL--------EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP-----TKM--- 156
Query: 1061 AASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090
+ + ++ Y + Q +
Sbjct: 157 QYARYRDGLSKLFTTRYEKARNSLQKVILR 186
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 2e-11
Identities = 28/189 (14%), Positives = 52/189 (27%), Gaps = 27/189 (14%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
KG+ A+ A+ + Y + Y+ G+F A Y +K +
Sbjct: 86 KKGQDSLAIQQYQAAVDR-----DTTR---LDMYGQIGSYFYNKGNFPLAIQYMEKQIRP 137
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 1024
K + +L YY + A + L L PN Y+
Sbjct: 138 T--------TTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--------KPNIYIGYLW 181
Query: 1025 VAMMEEGLGNVH---VALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSV 1081
A +A Y K ++ + + IA ++ +
Sbjct: 182 RARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241
Query: 1082 QHEQTTLQI 1090
+ L +
Sbjct: 242 AAWKNILAL 250
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 2e-10
Identities = 21/176 (11%), Positives = 44/176 (25%), Gaps = 27/176 (15%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
+KG A+ Y K + + L Y+ ++ +A K L++
Sbjct: 120 NKGNFPLAIQYMEKQIRP-----TTTD---PKVFYELGQAYYYNKEYVKADSSFVKVLEL 171
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRLQHT---ELALKYVKRALYLLHLTCGPSHPNTAAT 1021
P+ Y A LA Y ++ + +
Sbjct: 172 K--------PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEA 223
Query: 1022 YINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAY 1077
+A + A L + P + + + + L +
Sbjct: 224 NEYIAYYYTINRDKVKADAAWKNILALD-----PTN---KKAIDGLKMKLEHHHHH 271
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 6e-09
Identities = 23/158 (14%), Positives = 49/158 (31%), Gaps = 21/158 (13%)
Query: 933 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH 992
M A L+ ++ +A K ++ Y AV YY L
Sbjct: 1 MNDDVEFRYADFLFKNNNYAEAIEVFNKLEAKK--------YNSPYIYNRRAVCYYELAK 52
Query: 993 TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052
+LA K ++ ++ +A + + G +A++ A+ +
Sbjct: 53 YDLAQKDIETYFSKVNA-----TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD--- 104
Query: 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090
Y I +PL++Q+ + ++
Sbjct: 105 --TTR---LDMYGQIGSYFYNKGNFPLAIQYMEKQIRP 137
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 4e-11
Identities = 43/234 (18%), Positives = 75/234 (32%), Gaps = 44/234 (18%)
Query: 904 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 963
L +G E A KAL P A A++ LAVV + A +KAL
Sbjct: 48 LQRGNTEQAKVPLRKALE-----IDPSS---ADAHAALAVVFQTEMEPKLADEEYRKALA 99
Query: 964 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYI 1023
+ + + F Y + E A + + A +P + +
Sbjct: 100 SD--------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQD------TLYPERSRVFE 145
Query: 1024 NVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQH 1083
N+ ++ + A Y K+L+ N + + +A L Y + Q+
Sbjct: 146 NLGLVSLQMKKPAQAKEYFEKSLRLN-----RNQ---PSVALEMADLLYKEREYVPARQY 197
Query: 1084 EQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARN-----GTRKPDA 1132
Q G + R + L +K FE ++ A + P +
Sbjct: 198 YDLFAQG-----GGQNAR----SLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS 242
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 15/103 (14%), Positives = 26/103 (25%), Gaps = 16/103 (15%)
Query: 902 TALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKA 961
+L K A Y K+L +R +A +LY ++ A Y
Sbjct: 150 VSLQMKKPAQAKEYFEKSLR--------LNRNQPSVALEMADLLYKEREYVPARQYYDLF 201
Query: 962 LDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRAL 1004
+S + + A Y +
Sbjct: 202 AQGG--------GQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 3e-06
Identities = 25/137 (18%), Positives = 47/137 (34%), Gaps = 22/137 (16%)
Query: 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTE 994
AY L + G+ QA + +KAL+I+ P + ++ LAV + +
Sbjct: 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--------PSSADAHAALAVVFQTEMEPK 88
Query: 995 LALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054
LA + ++AL A N A + L +A + L
Sbjct: 89 LADEEYRKALAS--------DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ---DTLY 137
Query: 1055 PDHIQTAASYHAIAIAL 1071
P+ + + + +
Sbjct: 138 PER---SRVFENLGLVS 151
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 65.7 bits (160), Expect = 8e-11
Identities = 37/220 (16%), Positives = 77/220 (35%), Gaps = 23/220 (10%)
Query: 890 SADGRQLLESSKTAL------DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAV 943
S + + LESS L + + E+++ + + A +LLA
Sbjct: 2 SENNKNSLESSLRQLKCHFTWNLMEGENSLDDFEDKVFYRTEFQNREFK--ATMCNLLAY 59
Query: 944 VLYHTGDFNQATIYQQKALDINERELGLD-HPDTMKSYGDLAVFYYRLQHTELALKYVKR 1002
+ + G A +KA ++ ++E ++ ++G+ A YY + YV +
Sbjct: 60 LKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDK 119
Query: 1003 ALYLLHLTCGPSHPNTAATYIN--VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT 1060
++ P + ++ G A KAL+ P +
Sbjct: 120 VKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-----PKN--- 171
Query: 1061 AASYHAIAIALSLMEAYPLSVQHEQTTLQILRA-KLGPDD 1099
+AIA ++ +P + + +A +L PD+
Sbjct: 172 PEFTSGLAIASYRLDNWP---PSQNAIDPLRQAIRLNPDN 208
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 1e-07
Identities = 29/204 (14%), Positives = 61/204 (29%), Gaps = 45/204 (22%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLY----HTGDFNQATIYQQK 960
+ ++A+ +A+ P + LLA+ L+ + + ++
Sbjct: 187 NWPPSQNAIDPLRQAIRL-----NPDN---QYLKVLLALKLHKMREEGEEEGEGEKLVEE 238
Query: 961 ALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAA 1020
AL+ P A FY R + A++ +K+AL PN A
Sbjct: 239 ALEKA--------PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--------IPNNAY 282
Query: 1021 TYINVAM------------MEEGLGNVHVALRYLHKALKCNQRL--LGPDHIQTAASYHA 1066
+ + E G+ L + A+ ++ +
Sbjct: 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNL---FRVCSI 339
Query: 1067 IAIALSLMEAYPLSVQHEQTTLQI 1090
+A +L + Y + + Q
Sbjct: 340 LASLHALADQYEEAEYYFQKEFSK 363
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 2e-07
Identities = 30/173 (17%), Positives = 55/173 (31%), Gaps = 16/173 (9%)
Query: 905 DKGKLEDAVTYGTKALAKL-VAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 963
KG+ E A+ KA + + + A V YH G + IY K
Sbjct: 63 LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKH 122
Query: 964 INERELGLDHPDTMKSYGDL--AVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAAT 1021
+ E+ ++ + + E A ++AL P +P +
Sbjct: 123 VCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK-----KPKNPEFTSG 177
Query: 1022 YINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLM 1074
+ + A+ L +A++ N PD+ +A+ L M
Sbjct: 178 LAIASYRLDNWPPSQNAIDPLRQAIRLN-----PDN---QYLKVLLALKLHKM 222
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 5e-05
Identities = 16/140 (11%), Positives = 38/140 (27%), Gaps = 27/140 (19%)
Query: 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVF-YYRLQHT 993
S+LA + + +A Y QK L + F Y+++
Sbjct: 334 FRVCSILASLHALADQYEEAEYYFQKEFSKE-----LTPVAKQLLHLRYGNFQLYQMKCE 388
Query: 994 ELALKYVKRALYL----------------LHLTCGPSHPNTAATYINVAMMEEGLGNVHV 1037
+ A+ + + + + + + +A ++E +
Sbjct: 389 DKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQ 448
Query: 1038 ALRYLHKALKCNQRLLGPDH 1057
A + L+ G
Sbjct: 449 ADEDSERGLE-----SGSLI 463
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 5e-04
Identities = 15/151 (9%), Positives = 44/151 (29%), Gaps = 11/151 (7%)
Query: 904 LDKGKLEDAVTYGTKALAKLVAVCGPYHRM----TAGAYSLLAVVLYHTGDFNQATIYQQ 959
K + + A+ KAL + + ++ A + ++ + +
Sbjct: 258 RRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIG 317
Query: 960 KALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTA 1019
A+ ++ + + + LA + E A Y ++ +
Sbjct: 318 HAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-----ELTPVAKQ 371
Query: 1020 ATYINVA-MMEEGLGNVHVALRYLHKALKCN 1049
++ + A+ + + +K N
Sbjct: 372 LLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN 402
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490 | Back alignment and structure |
|---|
Score = 65.0 bits (157), Expect = 2e-10
Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 3/137 (2%)
Query: 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQ 953
+ LE A +G + V + L K V + S+ + VL + + +
Sbjct: 310 KDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEE 369
Query: 954 ATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 1013
A+ Y ++ +D + ++ + + + H E+ + +A +L +T GP
Sbjct: 370 ASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGP 429
Query: 1014 SHPNTAATYINVAMMEE 1030
SHP T AM +
Sbjct: 430 SHPITKDLE---AMRMQ 443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490 | Back alignment and structure |
|---|
Score = 61.1 bits (147), Expect = 2e-09
Identities = 16/111 (14%), Positives = 35/111 (31%)
Query: 947 HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006
G +++ ++ L+ E + ++ + LQ E A Y +R +
Sbjct: 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG 380
Query: 1007 LHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 1057
++ + + G++ V + KA GP H
Sbjct: 381 YMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490 | Back alignment and structure |
|---|
Score = 46.5 bits (109), Expect = 7e-05
Identities = 19/135 (14%), Positives = 36/135 (26%), Gaps = 2/135 (1%)
Query: 996 ALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 1055
+K + L ++ + + L A Y + + +L
Sbjct: 328 VVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHH 387
Query: 1056 DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF--E 1113
++ Q + + + IL GP T+D A E
Sbjct: 388 NNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEME 447
Query: 1114 SKAFEQQEAARNGTR 1128
+ F Q E + R
Sbjct: 448 LRMFRQNEFMYHKMR 462
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 2e-10
Identities = 34/222 (15%), Positives = 69/222 (31%), Gaps = 37/222 (16%)
Query: 904 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 963
+ A AL P + A+ + A + + ++A ++AL
Sbjct: 19 MRGQDYRQATASIEDALKS-----DPKN---ELAWLVRAEIYQYLKVNDKAQESFRQALS 70
Query: 964 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYI 1023
I D + +YG RL ++ Y +AL P++P +
Sbjct: 71 IKP-----DSAEINNNYG--WFLCGRLNRPAESMAYFDKALAD------PTYPTPYIANL 117
Query: 1024 NVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQH 1083
N + G +A YL ++L P ++ +A L + +
Sbjct: 118 NKGICSAKQGQFGLAEAYLKRSLAAQ-----PQF---PPAFKELARTKMLAGQLGDADYY 169
Query: 1084 EQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARN 1125
+ ++++ L + +KA +AA
Sbjct: 170 ----FKKYQSRVEVLQ----ADDLLLGWKIAKALGNAQAAYE 203
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 2e-10
Identities = 27/182 (14%), Positives = 49/182 (26%), Gaps = 32/182 (17%)
Query: 904 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 963
D+ + Y KAL + + Y + + +++QA KA +
Sbjct: 281 ADRNDSTEYYNYFDKALKL-----DSNN---SSVYYHRGQMNFILQNYDQAGKDFDKAKE 332
Query: 964 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYI 1023
++ P+ + Y LA YR + A P
Sbjct: 333 LD--------PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--------FPEAPEVPN 376
Query: 1024 NVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQH 1083
A + + AL+ A++ L Y IA + +
Sbjct: 377 FFAEILTDKNDFDKALKQYDLAIE-----LENKL---DGIYVGIAPLVGKATLLTRNPTV 428
Query: 1084 EQ 1085
E
Sbjct: 429 EN 430
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 3e-09
Identities = 32/231 (13%), Positives = 57/231 (24%), Gaps = 51/231 (22%)
Query: 904 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 963
+ A KA P + Y LA + Y F+ +A
Sbjct: 315 FILQNYDQAGKDFDKAKE-----LDPEN---IFPYIQLACLAYRENKFDDCETLFSEAKR 366
Query: 964 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYI 1023
P+ + A + ALK A+ L Y+
Sbjct: 367 KF--------PEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL--------ENKLDGIYV 410
Query: 1024 NVAMM---------EEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLM 1074
+A + + N A L KA K + P + +A
Sbjct: 411 GIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-----PRS---EQAKIGLAQMKLQQ 462
Query: 1075 EAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARN 1125
E ++ + + L ++A + Q+ R+
Sbjct: 463 EDIDEAITLFEESA-----DLART-----MEEKLQAITFAEAAKVQQRIRS 503
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 1e-08
Identities = 24/156 (15%), Positives = 47/156 (30%), Gaps = 25/156 (16%)
Query: 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTE 994
A + + + D A +KA+++ P + SY +A+ +
Sbjct: 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELF--------PR-VNSYIYMALIMADRNDST 287
Query: 995 LALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054
Y +AL L N ++ Y + M L N A + KA + +
Sbjct: 288 EYYNYFDKALKL--------DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD----- 334
Query: 1055 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090
P++ Y +A + +
Sbjct: 335 PEN---IFPYIQLACLAYRENKFDDCETLFSEAKRK 367
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 1e-07
Identities = 24/142 (16%), Positives = 51/142 (35%), Gaps = 18/142 (12%)
Query: 949 GDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH 1008
F +A ++ LD N + L S +F + A + +K+A+ L
Sbjct: 210 ESFTKAARLFEEQLDKNNEDEKLK-EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL-- 266
Query: 1009 LTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIA 1068
P + YI +A++ + Y KALK L ++ ++ Y+
Sbjct: 267 ------FPRVNS-YIYMALIMADRNDSTEYYNYFDKALK-----LDSNN---SSVYYHRG 311
Query: 1069 IALSLMEAYPLSVQHEQTTLQI 1090
+++ Y + + ++
Sbjct: 312 QMNFILQNYDQAGKDFDKAKEL 333
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 2e-06
Identities = 32/230 (13%), Positives = 63/230 (27%), Gaps = 30/230 (13%)
Query: 902 TALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKA 961
K +DA+ Y AL YS L+ GD + KA
Sbjct: 15 QFFRNKKYDDAIKYYNWALE-----LKEDPV----FYSNLSACYVSVGDLKKVVEMSTKA 65
Query: 962 LDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAAT 1021
L++ PD K A L A+ + + +
Sbjct: 66 LELK--------PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG-----DFNDASIEP 112
Query: 1022 YINVAMMEEGLGNVHVALRYLHKALKCNQRL------LGPDHIQTAASYHAIAIALSLME 1075
+ + ++ + + + A L D + S ++A + +
Sbjct: 113 MLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFK 172
Query: 1076 AYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES--KAFEQQEAA 1123
++++ G +L + ++ + ES KA E
Sbjct: 173 PELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQ 222
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 2e-10
Identities = 24/195 (12%), Positives = 50/195 (25%), Gaps = 32/195 (16%)
Query: 904 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 963
DK ++ + KA+ P + Y + + D+ A QKA
Sbjct: 287 ADKENSQEFFKFFQKAVDL-----NPEY---PPTYYHRGQMYFILQDYKNAKEDFQKAQS 338
Query: 964 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYI 1023
+N P+ + Y LA Y+ + + P
Sbjct: 339 LN--------PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--------FPTLPEVPT 382
Query: 1024 NVAMMEEGLGNVHVALRYLHKALK--------CNQRLLGPDHIQTAASYHAIAIALSLME 1075
A + G+ A++ A + A + E
Sbjct: 383 FFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE 442
Query: 1076 AYPLSVQHEQTTLQI 1090
+ +++ ++
Sbjct: 443 KFNAAIKLLTKACEL 457
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 2e-10
Identities = 28/200 (14%), Positives = 56/200 (28%), Gaps = 31/200 (15%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
+GK ++ + + K + A +L GDF+ A A +
Sbjct: 356 KQGKFTESEAFFNETKLK--------FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407
Query: 965 NE--------RELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP 1016
E + + + A+K + +A L P
Sbjct: 408 EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--------DP 459
Query: 1017 NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH--IQTAASYHAIAIALSLM 1074
+ I +A ++ + + A+ + A ++ A +
Sbjct: 460 RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA-----RTMDEKLQATTFAEAAKIQKRL 514
Query: 1075 EAYPLSVQHEQTTLQILRAK 1094
A P+ + TL RAK
Sbjct: 515 RADPIISAKMELTLARYRAK 534
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 1e-08
Identities = 26/195 (13%), Positives = 55/195 (28%), Gaps = 32/195 (16%)
Query: 904 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 963
++A KA + P + Y LA +LY G F ++ + +
Sbjct: 321 FILQDYKNAKEDFQKAQSL-----NPEN---VYPYIQLACLLYKQGKFTESEAFFNETKL 372
Query: 964 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL--------LHLTCGPSH 1015
P + A + A+K A L + +
Sbjct: 373 KF--------PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGK 424
Query: 1016 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLME 1075
A + + + A++ L KA + + P + +A ME
Sbjct: 425 ATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-----PRS---EQAKIGLAQLKLQME 476
Query: 1076 AYPLSVQHEQTTLQI 1090
+++ + + +
Sbjct: 477 KIDEAIELFEDSAIL 491
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 2e-08
Identities = 28/184 (15%), Positives = 56/184 (30%), Gaps = 33/184 (17%)
Query: 907 GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 966
++ T A A + + + A + Q++++++
Sbjct: 223 DMYHSLLSANTVDDPL-----RENA---ALALCYTGIFHFLKNNLLDAQVLLQESINLH- 273
Query: 967 RELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVA 1026
P SY LA+ ++++ K+ ++A+ L +P TY +
Sbjct: 274 -------PTP-NSYIFLALTLADKENSQEFFKFFQKAVDL--------NPEYPPTYYHRG 317
Query: 1027 MMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQT 1086
M L + A KA N P++ Y +A L + S
Sbjct: 318 QMYFILQDYKNAKEDFQKAQSLN-----PEN---VYPYIQLACLLYKQGKFTESEAFFNE 369
Query: 1087 TLQI 1090
T
Sbjct: 370 TKLK 373
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 1e-06
Identities = 18/143 (12%), Positives = 44/143 (30%), Gaps = 29/143 (20%)
Query: 907 GKLEDAVTYGTKALAKLVAVCGP-YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 965
G + + P + A + +FN+A Y Q A++++
Sbjct: 1 GSHMNGEPDIAQLKGLS-----PSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD 55
Query: 966 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINV 1025
P+ Y +++ Y E +++ +AL + P+ + +
Sbjct: 56 --------PNEPVFYSNISACYISTGDLEKVIEFTTKALEI--------KPDHSKALLR- 98
Query: 1026 AMMEEGLGNVHVALRYLHKALKC 1048
+ + +L A+
Sbjct: 99 ------RASANESLGNFTDAMFD 115
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 7e-06
Identities = 31/223 (13%), Positives = 61/223 (27%), Gaps = 29/223 (13%)
Query: 902 TALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKA 961
+A+ Y A+ P YS ++ TGD + + KA
Sbjct: 34 HFFTAKNFNEAIKYYQYAIE-----LDPNE---PVFYSNISACYISTGDLEKVIEFTTKA 85
Query: 962 LDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAAT 1021
L+I PD K+ A L + A+ + +
Sbjct: 86 LEIK--------PDHSKALLRRASANESLGNFTDAMFDLSVLSLN---------GDFDGA 128
Query: 1022 YINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSV 1081
I + A++ L++ L ++ + I S +E ++
Sbjct: 129 SIEPML---ERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT 185
Query: 1082 QHE-QTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAA 1123
T +L L T + +K+ + +
Sbjct: 186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSL 228
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 | Back alignment and structure |
|---|
Score = 62.6 bits (151), Expect = 6e-10
Identities = 20/123 (16%), Positives = 44/123 (35%)
Query: 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQ 953
R ++E + A + + + K+ +V + V + D+
Sbjct: 299 RNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEG 358
Query: 954 ATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 1013
A Y QK + + + + + L Y L++ K +K+A+ ++ + G
Sbjct: 359 ALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGK 418
Query: 1014 SHP 1016
HP
Sbjct: 419 DHP 421
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 | Back alignment and structure |
|---|
Score = 61.1 bits (147), Expect = 2e-09
Identities = 17/99 (17%), Positives = 34/99 (34%)
Query: 959 QKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT 1018
+ + + + + +Q E ALKY ++ + N
Sbjct: 322 ELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNV 381
Query: 1019 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 1057
A+ ++ + + GL N + L KA+ + G DH
Sbjct: 382 ASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH 420
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 2e-05
Identities = 17/77 (22%), Positives = 24/77 (31%)
Query: 900 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQ 959
L E A+ YG K + Y A + L + + +
Sbjct: 347 MGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALK 406
Query: 960 KALDINERELGLDHPDT 976
KA+ I E G DHP
Sbjct: 407 KAIAIMEVAHGKDHPYI 423
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 5e-04
Identities = 14/139 (10%), Positives = 40/139 (28%)
Query: 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 1031
D ++ + + L+ + + + S+ +
Sbjct: 293 DMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY 352
Query: 1032 LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091
+ + AL+Y K +K + + A+ + + +E + + + I+
Sbjct: 353 MQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIM 412
Query: 1092 RAKLGPDDLRTQDAAAWLE 1110
G D + +E
Sbjct: 413 EVAHGKDHPYISEIKQEIE 431
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 2e-09
Identities = 38/257 (14%), Positives = 71/257 (27%), Gaps = 36/257 (14%)
Query: 907 GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 966
+ A+ P A+ +LA GD + Q+ L ++
Sbjct: 3 ADGPRELLQLRAAVR-----HRPQD---FVAWLMLADAELGMGDTTAGEMAVQRGLALH- 53
Query: 967 RELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVA 1026
P ++ L + Q A +++A P + +
Sbjct: 54 -------PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA--------APEHPGIALWLG 98
Query: 1027 MMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQT 1086
E G A +A + P+ A L A + +
Sbjct: 99 HALEDAGQAEAAAAAYTRAHQLL-----PEEPYITAQLLNWRRRLCDWRALDVLSAQVRA 153
Query: 1087 TLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLL 1146
+ + P ++DA+A + ++ Q AA P + SKG L V
Sbjct: 154 AVAQGVGAVEPFAFLSEDASAAEQLACARTRAQAIAASVRPLAP-TRVRSKGPLRVG--- 209
Query: 1147 DYINPSHDTKGRNVSTL 1163
++ S+ L
Sbjct: 210 -FV--SNGFGAHPTGLL 223
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 1e-07
Identities = 21/143 (14%), Positives = 36/143 (25%), Gaps = 24/143 (16%)
Query: 948 TGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 1007
T D + + + A+ P ++ LA + T V+R L L
Sbjct: 2 TADGPRELLQLRAAVRHR--------PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL- 52
Query: 1008 HLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAI 1067
HP + + A L +A P+H +
Sbjct: 53 -------HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-----PEH---PGIALWL 97
Query: 1068 AIALSLMEAYPLSVQHEQTTLQI 1090
AL + Q+
Sbjct: 98 GHALEDAGQAEAAAAAYTRAHQL 120
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 4e-06
Identities = 30/171 (17%), Positives = 46/171 (26%), Gaps = 21/171 (12%)
Query: 902 TALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKA 961
L G + LA P H A + L V + +A + Q+A
Sbjct: 32 AELGMGDTTAGEMAVQRGLA-----LHPGH---PEAVARLGRVRWTQQRHAEAAVLLQQA 83
Query: 962 LDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAAT 1021
D P+ L E A RA LL P P A
Sbjct: 84 SDAA--------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-----PEEPYITAQ 130
Query: 1022 YINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALS 1072
+N + V + A+ + P + + A +A +
Sbjct: 131 LLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLACA 181
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 2e-09
Identities = 20/142 (14%), Positives = 33/142 (23%), Gaps = 21/142 (14%)
Query: 937 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELA 996
L Y G ++ A Q ++ + + L L E A
Sbjct: 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD--------HYDARYFLGLGACRQSLGLYEQA 71
Query: 997 LKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 1056
L+ + N + A LG++ A + A L
Sbjct: 72 LQSYSYGALM--------DINEPRFPFHAAECHLQLGDLDGAESGFYSARA-----LAAA 118
Query: 1057 HIQTAASYHAIAIALSLMEAYP 1078
A L + A
Sbjct: 119 QPAHEALAARAGAMLEAVTARK 140
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 5e-04
Identities = 13/132 (9%), Positives = 31/132 (23%), Gaps = 24/132 (18%)
Query: 959 QKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT 1018
++ DT++ L Y+ + A K + L
Sbjct: 8 AMLRGLS--------EDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYD 51
Query: 1019 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYP 1078
A ++ + + LG AL+ + + A +
Sbjct: 52 ARYFLGLGACRQSLGLYEQALQSYSYGAL-----MDINE---PRFPFHAAECHLQLGDLD 103
Query: 1079 LSVQHEQTTLQI 1090
+ + +
Sbjct: 104 GAESGFYSARAL 115
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429 | Back alignment and structure |
|---|
Score = 60.7 bits (146), Expect = 3e-09
Identities = 16/143 (11%), Positives = 39/143 (27%), Gaps = 3/143 (2%)
Query: 888 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH 947
+ ++ L+ + K E + ++ + +
Sbjct: 282 QVWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN 341
Query: 948 TGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 1007
G +A Y + ++ HP + A+K ++ A ++
Sbjct: 342 LGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM 401
Query: 1008 HLTCGPSHPNTAATYINVAMMEE 1030
+T G H ++EE
Sbjct: 402 RVTHGREHSLIEDLI---LLLEE 421
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 4e-09
Identities = 22/113 (19%), Positives = 35/113 (30%)
Query: 945 LYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRAL 1004
L + Q Q + N L + +K L E AL Y R +
Sbjct: 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM 356
Query: 1005 YLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 1057
+ SHP + V ++ G A++ L A + G +H
Sbjct: 357 EPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH 409
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429 | Back alignment and structure |
|---|
Score = 44.9 bits (105), Expect = 2e-04
Identities = 15/117 (12%), Positives = 33/117 (28%)
Query: 994 ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 1053
E L + + + LG + AL Y + ++ +
Sbjct: 304 EQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFF 363
Query: 1054 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE 1110
H + +P ++++ + I+R G + +D LE
Sbjct: 364 PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLE 420
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 4e-09
Identities = 29/213 (13%), Positives = 60/213 (28%), Gaps = 40/213 (18%)
Query: 901 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQK 960
L +G L + + A+ + P A A+ L + + A + Q+
Sbjct: 73 LKRLKEGDLPVTILFMEAAILQ-----DPGD---AEAWQFLGITQAENENEQAAIVALQR 124
Query: 961 ALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAA 1020
L++ P+ +K+ LAV Y H + A + +K + +P
Sbjct: 125 CLELQ--------PNNLKALMALAVSYTNTSHQQDACEALKNWIKQ--------NPKYKY 168
Query: 1021 TYINVAMMEEGLGNVHVALRYLHKALKCNQRL-----LGPDHIQTAASYHAIAIALSLME 1075
N + + + D I + + L
Sbjct: 169 LVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID-PDLQTGLGVLFHLSG 227
Query: 1076 AYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAW 1108
+ ++ L + R +D + W
Sbjct: 228 EFNRAIDAFNAALTV----------RPEDYSLW 250
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 4e-07
Identities = 40/222 (18%), Positives = 69/222 (31%), Gaps = 27/222 (12%)
Query: 877 VSLVPVHKQAACSSADGRQLLESSKTAL-DKGKLEDAVTYGTKALAKLVAVCGPYHRMTA 935
+ P +K + L + D LE +A + +
Sbjct: 160 IKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-----GDM-IDP 213
Query: 936 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTEL 995
+ L V+ + +G+FN+A AL + P+ + L +E
Sbjct: 214 DLQTGLGVLFHLSGEFNRAIDAFNAALTVR--------PEDYSLWNRLGATLANGDRSEE 265
Query: 996 ALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 1055
A++ RAL + P + N+ + LG A+ AL ++
Sbjct: 266 AVEAYTRALEI--------QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQ 317
Query: 1056 DHIQTAASYHAIA----IALSLMEAYPLSVQHEQTTLQILRA 1093
+ A I IALSLM+ L L +L
Sbjct: 318 QQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLR 359
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 22/177 (12%), Positives = 47/177 (26%), Gaps = 32/177 (18%)
Query: 937 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELA 996
+ GD ++ + A+ + P +++ L + ++ + A
Sbjct: 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD--------PGDAEAWQFLGITQAENENEQAA 118
Query: 997 LKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 1056
+ ++R L L PN + +A+ + A L +K N P
Sbjct: 119 IVALQRCLEL--------QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQN-----PK 165
Query: 1057 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR-----AKLGPDDLRTQDAAAW 1108
+ + L S + A D + D
Sbjct: 166 Y---KYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI---DPDLQ 216
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 6e-09
Identities = 30/194 (15%), Positives = 50/194 (25%), Gaps = 31/194 (15%)
Query: 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD 950
AD + LE K L G+L DA++ A+ P + AY A V G
Sbjct: 1 ADVEKHLELGKKLLAAGQLADALSQFHAAVDG-----DPDN---YIAYYRRATVFLAMGK 52
Query: 951 FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL---- 1006
A K + + D + + + A K+ L
Sbjct: 53 SKAALPDLTKVIALK--------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE 104
Query: 1007 ---LHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAAS 1063
+ + A+ + A+ +L K L+ + A
Sbjct: 105 QEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE-----VCVWD---AEL 156
Query: 1064 YHAIAIALSLMEAY 1077
A
Sbjct: 157 RELRAECFIKEGEP 170
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 6e-08
Identities = 38/207 (18%), Positives = 64/207 (30%), Gaps = 36/207 (17%)
Query: 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQ 953
++L + A D A+T+ K L + A L A G+ +
Sbjct: 121 QRLRSQALDAFDGADYTAAITFLDKILEV-----CVWD---AELRELRAECFIKEGEPRK 172
Query: 954 ATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 1013
A + A + D +++ ++ YY+L EL+L V+ L L
Sbjct: 173 AISDLKAASKLK--------SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL-----DQ 219
Query: 1014 SHPNTAATYINV----AMMEEG-----LGNVHVALRYLHKALKCNQRLLGPDHIQTAA-S 1063
H A Y V ++E G A +K P + S
Sbjct: 220 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-----PSVAEYTVRS 274
Query: 1064 YHAIAIALSLMEAYPLSVQHEQTTLQI 1090
I S E +++ LQ+
Sbjct: 275 KERICHCFSKDEKPVEAIRICSEVLQM 301
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 8e-05
Identities = 26/191 (13%), Positives = 55/191 (28%), Gaps = 40/191 (20%)
Query: 904 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 963
+ +G+ A++ A + A+ ++ + Y GD + ++ L
Sbjct: 165 IKEGEPRKAISDLKAASK-----LKSDN---TEAFYKISTLYYQLGDHELSLSEVRECLK 216
Query: 964 INERELGLDHPDTMKSYG---------DLAVFYYRLQHTELALKYVKRALYL---LHLTC 1011
+++ DH Y + A R A + + +
Sbjct: 217 LDQ-----DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYT 271
Query: 1012 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIAL 1071
S + E A+R + L+ PD+ + A A
Sbjct: 272 VRSKERICHCFSKDEKPVE-------AIRICSEVLQME-----PDN---VNALKDRAEAY 316
Query: 1072 SLMEAYPLSVQ 1082
+ E Y ++Q
Sbjct: 317 LIEEMYDEAIQ 327
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 3e-04
Identities = 22/179 (12%), Positives = 52/179 (29%), Gaps = 28/179 (15%)
Query: 905 DKGKLEDAVTYGTKALAKL---VAVCGPYHRMTAGAYSLL--AVVLYHTGDFNQATIYQQ 959
G E +++ + L KL C +++ L+ A L G + AT +
Sbjct: 200 QLGDHELSLSEVRECL-KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYE 258
Query: 960 KALDINERELGLDHPDT-MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT 1018
+ + ++S + + + + A++ L + P+
Sbjct: 259 SVMKTEP-----SVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--------EPDN 305
Query: 1019 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAY 1077
+ A A++ A + N + + A L++
Sbjct: 306 VNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-----END---QQIREGLEKAQRLLKQS 356
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 1e-08
Identities = 30/200 (15%), Positives = 53/200 (26%), Gaps = 33/200 (16%)
Query: 885 QAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVV 944
+ + + + LE K L G+L DA++ A+ P + AY A V
Sbjct: 20 FQSMADVE--KHLELGKKLLAAGQLADALSQFHAAVDG-----DPDN---YIAYYRRATV 69
Query: 945 LYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRAL 1004
G A K + + D + + + A K+ L
Sbjct: 70 FLAMGKSKAALPDLTKVIQLK--------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVL 121
Query: 1005 YL-------LHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 1057
+ + A+ G G+ A+ +L K L+ +
Sbjct: 122 KSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE-----VCVWD 176
Query: 1058 IQTAASYHAIAIALSLMEAY 1077
A A
Sbjct: 177 ---AELRELRAECFIKEGEP 193
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 2e-07
Identities = 37/229 (16%), Positives = 67/229 (29%), Gaps = 41/229 (17%)
Query: 904 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 963
L GK + A+ TK + A +L G ++A +K L
Sbjct: 71 LAMGKSKAALPDLTKVIQ-----LKMDF---TAARLQRGHLLLKQGKLDEAEDDFKKVLK 122
Query: 964 IN-------ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP 1016
N E + L D M+ A+ + A+ ++ + L +
Sbjct: 123 SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--------CV 174
Query: 1017 NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEA 1076
A A G A+ L A K D+ +++ I+ +
Sbjct: 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLK-----NDN---TEAFYKISTLYYQLGD 226
Query: 1077 YPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARN 1125
+ LS+ + L KL D + Y + K + +
Sbjct: 227 HELSLSEVRECL-----KLDQD-----HKRCFAHYKQVKKLNKLIESAE 265
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 2e-07
Identities = 27/204 (13%), Positives = 59/204 (28%), Gaps = 30/204 (14%)
Query: 871 FRKIDVVSLVPVHKQAACSSADGRQL---LESSKTALDKGKLEDAVTYGTKALAKLVAVC 927
R+ + L HK+ ++L +ES++ + G+ DA + +
Sbjct: 234 VRE--CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVM----KTE 287
Query: 928 GPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFY 987
T + + +A + L + PD + + D A Y
Sbjct: 288 PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME--------PDNVNALKDRAEAY 339
Query: 988 YRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 1047
+ + A++ + A + N + + L Y +K
Sbjct: 340 LIEEMYDEAIQDYETAQEH--------NENDQQIREGLEKAQRLLKQSQKRDYYKILGVK 391
Query: 1048 CNQRLLGPDHIQTAASYHAIAIAL 1071
N + +Y +A+
Sbjct: 392 RN-----AKKQEIIKAYRKLALQW 410
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 5e-04
Identities = 27/197 (13%), Positives = 57/197 (28%), Gaps = 36/197 (18%)
Query: 904 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 963
+ +G+ A++ A + A+ ++ + Y GD + ++ L
Sbjct: 188 IKEGEPRKAISDLKAASKL-----KNDN---TEAFYKISTLYYQLGDHELSLSEVRECLK 239
Query: 964 INERELGLDHPDTMKSYG---------DLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 1014
+++ DH Y + A R A + + PS
Sbjct: 240 LDQ-----DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT-----EPS 289
Query: 1015 HPNTAAT-YINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL 1073
+ A+R + L+ PD+ + A A +
Sbjct: 290 IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-----PDN---VNALKDRAEAYLI 341
Query: 1074 MEAYPLSVQHEQTTLQI 1090
E Y ++Q +T +
Sbjct: 342 EEMYDEAIQDYETAQEH 358
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 1e-08
Identities = 30/173 (17%), Positives = 50/173 (28%), Gaps = 32/173 (18%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
K ++A KAL G + + +L VL A Y Q+A+++
Sbjct: 103 VKEMYKEAKDMFEKALRA-----GMEN---GDLFYMLGTVLVKLEQPKLALPYLQRAVEL 154
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 1024
N + ++ + + AL P A + N
Sbjct: 155 N--------ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--------DPGHADAFYN 198
Query: 1025 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAY 1077
+ N AL L KA+ PDH + HA + +
Sbjct: 199 AGVTYAYKENREKALEMLDKAIDIQ-----PDH---MLALHAKKLLGHHHHHH 243
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 3e-07
Identities = 27/167 (16%), Positives = 52/167 (31%), Gaps = 32/167 (19%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
+ G E A TKA+ + A Y A +L + +A + KAL++
Sbjct: 35 EFGDYEKAAEAFTKAIEE-----NKED---AIPYINFANLLSSVNELERALAFYDKALEL 86
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 1024
+ +Y Y + + A ++AL +
Sbjct: 87 D--------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA--------GMENGDLFYM 130
Query: 1025 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIAL 1071
+ + L +AL YL +A++ N + + + L
Sbjct: 131 LGTVLVKLEQPKLALPYLQRAVELN-----END---TEARFQFGMCL 169
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 2e-08
Identities = 30/216 (13%), Positives = 55/216 (25%), Gaps = 41/216 (18%)
Query: 901 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQK 960
L +G L +AV A+ + P H A+ L A ++
Sbjct: 72 LRRLQEGDLPNAVLLFEAAVQQ-----DPKH---MEAWQYLGTTQAENEQELLAISALRR 123
Query: 961 ALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL--------LHLTCG 1012
L++ PD + LAV + A + ++ L G
Sbjct: 124 CLELK--------PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG 175
Query: 1013 PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALS 1072
+ + + A++ + P I + + +
Sbjct: 176 AGGAGLGPSKRILGSLLS-DSLFLEVKELFLAAVRLD-----PTSID-PDVQCGLGVLFN 228
Query: 1073 LMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAW 1108
L Y +V L + R D W
Sbjct: 229 LSGEYDKAVDCFTAALSV----------RPNDYLLW 254
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 2e-07
Identities = 34/196 (17%), Positives = 63/196 (32%), Gaps = 25/196 (12%)
Query: 904 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 963
L + A+ P + L V+ +G++++A AL
Sbjct: 192 LSDSLFLEVKELFLAAVR-----LDPTS-IDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245
Query: 964 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYI 1023
+ P+ + L +E A+ +RAL L P +
Sbjct: 246 VR--------PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--------QPGYIRSRY 289
Query: 1024 NVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHA---IAIALSLMEAYPLS 1080
N+ + LG A+ + +AL ++ GP A S + + +ALS++
Sbjct: 290 NLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349
Query: 1081 VQHEQTTLQILRAKLG 1096
+ L L G
Sbjct: 350 GAADARDLSTLLTMFG 365
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 3e-04
Identities = 20/143 (13%), Positives = 39/143 (27%), Gaps = 21/143 (14%)
Query: 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTE 994
+ GD A + + A+ + P M+++ L +
Sbjct: 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--------PKHMEAWQYLGTTQAENEQEL 115
Query: 995 LALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054
LA+ ++R L L P+ + +A+ A L L+
Sbjct: 116 LAISALRRCLEL--------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYT----- 162
Query: 1055 PDHIQTAASYHAIAIALSLMEAY 1077
P + A L +
Sbjct: 163 PAYAHLVTPAEEGAGGAGLGPSK 185
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 3e-08
Identities = 26/215 (12%), Positives = 52/215 (24%), Gaps = 47/215 (21%)
Query: 904 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 963
L L +A P A+ L + A I A
Sbjct: 32 LKLANLAEAALAFEAVCQA-----APER---EEAWRSLGLTQAENEKDGLAIIALNHARM 83
Query: 964 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYI 1023
++ P + + LAV + + AL ++ L P
Sbjct: 84 LD--------PKDIAVHAALAVSHTNEHNANAALASLRAWLLS--------QPQYEQLGS 127
Query: 1024 NVAMMEEG--------LGNVHVALRYLHKALKCNQR--LLGPDHIQTAASYHAIAIALSL 1073
+ A + + P+ A + ++ + +L
Sbjct: 128 VNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND---AQLHASLGVLYNL 184
Query: 1074 MEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAW 1108
Y + + + +++ R DA W
Sbjct: 185 SNNYDSAAANLRRAVEL----------RPDDAQLW 209
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 4e-06
Identities = 27/192 (14%), Positives = 60/192 (31%), Gaps = 28/192 (14%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
+ + T AL P A ++ L V+ + +++ A ++A+++
Sbjct: 150 APNEYRECRTLLHAALE-----MNPND---AQLHASLGVLYNLSNNYDSAAANLRRAVEL 201
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 1024
PD + + L + AL RAL + +P N
Sbjct: 202 R--------PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--------NPGYVRVMYN 245
Query: 1025 VAMMEEGLGNVHVALRYLHKALKCN----QRLLGPDHIQTAASYHAIAIALSLMEAYPLS 1080
+A+ + +A + L +A+ T + + + L++M L
Sbjct: 246 MAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV 305
Query: 1081 VQHEQTTLQILR 1092
++
Sbjct: 306 ELTYAQNVEPFA 317
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 4e-04
Identities = 22/183 (12%), Positives = 52/183 (28%), Gaps = 33/183 (18%)
Query: 933 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH 992
M + + + +A + + P+ +++ L + +
Sbjct: 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAA--------PEREEAWRSLGLTQAENEK 70
Query: 993 TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052
LA+ + A L P A + +A+ N + AL L L
Sbjct: 71 DGLAIIALNHARML--------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--- 119
Query: 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSV------QHEQTTLQILRA-KLGPDDLRTQDA 1105
P + Q + + + + ++ + + A ++ P+ DA
Sbjct: 120 --PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-----DA 172
Query: 1106 AAW 1108
Sbjct: 173 QLH 175
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 3e-08
Identities = 28/198 (14%), Positives = 56/198 (28%), Gaps = 32/198 (16%)
Query: 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD 950
A+ ++ + + E + + P + + ++LL D
Sbjct: 8 AEYQRQRDPLHQFASQQNPEAQLQALQDKIRA-----NPQN---SEQWALLGEYYLWQND 59
Query: 951 FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRL---QHTELALKYVKRALYLL 1007
++ + + ++AL + + + Y LA Y T + +AL L
Sbjct: 60 YSNSLLAYRQALQLR--------GENAELYAALATVLYYQASQHMTAQTRAMIDKALAL- 110
Query: 1008 HLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAI 1067
N + +A N A+ K + L I +I
Sbjct: 111 -------DSNEITALMLLASDAFMQANYAQAIELWQKVMD-----LNSPRINRTQLVESI 158
Query: 1068 AIALSLMEAYPLSVQHEQ 1085
+A L L H
Sbjct: 159 NMAKLLQRRSDLEHHHHH 176
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 8e-08
Identities = 23/173 (13%), Positives = 41/173 (23%), Gaps = 32/173 (18%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
E + + A L + D+ A + +
Sbjct: 117 KLRNAEKELKKAEAEAY--------VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR 168
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 1024
P+ + Y + A +L A+ +A+ PN YI
Sbjct: 169 A--------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--------DPNFVRAYIR 212
Query: 1025 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAY 1077
A + + AL L A + + A I +A
Sbjct: 213 KATAQIAVKEYASALETLDAARTKD-----AEV---NNGSSAREIDQLYYKAS 257
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 1e-07
Identities = 27/189 (14%), Positives = 53/189 (28%), Gaps = 40/189 (21%)
Query: 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTE 994
A Y F++A + KA +++ D + + A Y E
Sbjct: 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--------KD-ITYLNNRAAAEYEKGEYE 55
Query: 995 LALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054
A+ + A+ A Y ++ +GN + L L K ++
Sbjct: 56 TAISTLNDAVEQ--------GREMRADYKVISKSFARIGNAYHKLGDLKKTIEYY----- 102
Query: 1055 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAW----LE 1110
+ H A L+ + ++ + + P+ A E
Sbjct: 103 QKS----LTEHRTADILTKLRNAEKELKKAEAEAYV-----NPE-----KAEEARLEGKE 148
Query: 1111 YFESKAFEQ 1119
YF +
Sbjct: 149 YFTKSDWPN 157
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 1e-07
Identities = 22/98 (22%), Positives = 32/98 (32%), Gaps = 13/98 (13%)
Query: 949 GDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH 1008
G QA Y +KA+ GL D + Y L + L A + +
Sbjct: 4 GLEAQAVPYYEKAI-----ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-- 56
Query: 1009 LTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKAL 1046
PN A + AM+ LG + L K +
Sbjct: 57 ------FPNHQALRVFYAMVLYNLGRYEQGVELLLKII 88
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 3e-07
Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 13/98 (13%)
Query: 907 GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 966
G AV Y KA+A G + A Y L G++ +A +
Sbjct: 4 GLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-- 56
Query: 967 RELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRAL 1004
P+ A+ Y L E ++ + + +
Sbjct: 57 ------FPNHQALRVFYAMVLYNLGRYEQGVELLLKII 88
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 1e-07
Identities = 18/148 (12%), Positives = 39/148 (26%), Gaps = 22/148 (14%)
Query: 937 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELA 996
LA Y +G + A Q ++ + + L + +LA
Sbjct: 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD--------HYDSRFFLGLGACRQAMGQYDLA 74
Query: 997 LKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 1056
+ + + A G + A L A + L +
Sbjct: 75 IHSYSYGAVM--------DIXEPRFPFHAAECLLQXGELAEAESGLFLAQE-----LIAN 121
Query: 1057 HIQTAASYHAIAIALSLMEAYPLSVQHE 1084
+ ++ L ++ ++HE
Sbjct: 122 XPEFXELSTRVSSMLEAIKLKK-EMKHE 148
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 3e-04
Identities = 19/174 (10%), Positives = 43/174 (24%), Gaps = 27/174 (15%)
Query: 949 GDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH 1008
G +I+ DT++ LA Y+ E A + L
Sbjct: 1 GPLGSGGGTIAMLNEIS--------SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL-- 50
Query: 1009 LTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIA 1068
+ ++ + + +G +A+ + A
Sbjct: 51 ------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV-----MDIXE---PRFPFHAA 96
Query: 1069 IALSLMEAYPLSVQHEQTTLQILRAKLGPDDLR-TQDAAAWLEYFESKAFEQQE 1121
L + ++ P+ + ++ LE + K + E
Sbjct: 97 ECLLQXGELAEAESGLFLAQEL--IANXPEFXELSTRVSSMLEAIKLKKEMKHE 148
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 2e-07
Identities = 13/110 (11%), Positives = 27/110 (24%), Gaps = 16/110 (14%)
Query: 941 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYV 1000
A Y+ G +A ++ + + + LA Y + + A
Sbjct: 42 YAYDFYNKGRIEEAEVFFRFLCIYD--------FYNVDYIMGLAAIYQIKEQFQQAADLY 93
Query: 1001 KRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050
A L N + + L A ++ +
Sbjct: 94 AVAFAL--------GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 2e-07
Identities = 20/204 (9%), Positives = 44/204 (21%), Gaps = 42/204 (20%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
++ + +A P A + + +A +
Sbjct: 220 ALETVQRLLPVLCQAHG-----LTPQQ---VVAIASNGGGKQALETVQRLLPVLCQAHGL 271
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 1024
P + + + L+ + L + +A L P +
Sbjct: 272 T--------PQQVVAIASNSGGKQALETVQRLLPVLCQAHGL--------TPQQVVAIAS 315
Query: 1025 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHE 1084
++ L V L L +A L P + + +E +
Sbjct: 316 NGGGKQALETVQRLLPVLCQAHG-----LTPQQVVA---IASHDGGKQALETVQRLLPVL 367
Query: 1085 QTTLQILRAKLGPDDLRTQDAAAW 1108
L + A
Sbjct: 368 CQAHG----------LTPEQVVAI 381
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 9e-06
Identities = 17/173 (9%), Positives = 39/173 (22%), Gaps = 32/173 (18%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
++ + +A A + + +A +
Sbjct: 84 ALETVQRLLPVLCQAHG--------LTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGL 135
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 1024
P+ + + L+ + L + +A L P +
Sbjct: 136 T--------PEQVVAIASHDGGKQALETVQALLPVLCQAHGL--------TPEQVVAIAS 179
Query: 1025 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAY 1077
++ L V L L +A L P + + +E
Sbjct: 180 NGGGKQALETVQRLLPVLCQAHG-----LTPQQVVA---IASNGGGKQALETV 224
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 3e-05
Identities = 21/204 (10%), Positives = 44/204 (21%), Gaps = 42/204 (20%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
++ + +A P A + + +A +
Sbjct: 186 ALETVQRLLPVLCQAHG-----LTPQQ---VVAIASNGGGKQALETVQRLLPVLCQAHGL 237
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 1024
P + + L+ + L + +A L P +
Sbjct: 238 T--------PQQVVAIASNGGGKQALETVQRLLPVLCQAHGL--------TPQQVVAIAS 281
Query: 1025 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHE 1084
+ ++ L V L L +A L P + + +E +
Sbjct: 282 NSGGKQALETVQRLLPVLCQAHG-----LTPQQVVA---IASNGGGKQALETVQRLLPVL 333
Query: 1085 QTTLQILRAKLGPDDLRTQDAAAW 1108
L Q A
Sbjct: 334 CQAHG----------LTPQQVVAI 347
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 1e-04
Identities = 18/173 (10%), Positives = 40/173 (23%), Gaps = 32/173 (18%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
++ + +A P A + + +A +
Sbjct: 288 ALETVQRLLPVLCQAHG-----LTPQQ---VVAIASNGGGKQALETVQRLLPVLCQAHGL 339
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 1024
P + + L+ + L + +A L P +
Sbjct: 340 T--------PQQVVAIASHDGGKQALETVQRLLPVLCQAHGL--------TPEQVVAIAS 383
Query: 1025 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAY 1077
++ L V L L +A L P+ + + +E
Sbjct: 384 NGGGKQALETVQRLLPVLCQAHG-----LTPEQ---VVAIASHDGGKQALETV 428
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 1e-04
Identities = 16/129 (12%), Positives = 31/129 (24%), Gaps = 20/129 (15%)
Query: 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTE 994
A + + +A + P+ + + L+ +
Sbjct: 378 VVAIASNGGGKQALETVQRLLPVLCQAHGLT--------PEQVVAIASHDGGKQALETVQ 429
Query: 995 LALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054
L + +A L P + L ++ L AL L
Sbjct: 430 RLLPVLCQAHGL--------TPQQVVAIASNGGGRPALESIVAQLSRPDPALA----ALT 477
Query: 1055 PDHIQTAAS 1063
DH+ A
Sbjct: 478 NDHLVALAC 486
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 1e-04
Identities = 15/143 (10%), Positives = 33/143 (23%), Gaps = 24/143 (16%)
Query: 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTE 994
A + + +A + P + + L+ +
Sbjct: 72 VVAIASHDGGKQALETVQRLLPVLCQAHGLT--------PQQVVAIASHDGGKQALETVQ 123
Query: 995 LALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054
L + +A L P + ++ L V L L +A
Sbjct: 124 RLLPVLCQAHGL--------TPEQVVAIASHDGGKQALETVQALLPVLCQAHGLT----- 170
Query: 1055 PDHIQTAASYHAIAIALSLMEAY 1077
P+ + + +E
Sbjct: 171 PEQVVA---IASNGGGKQALETV 190
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 50.9 bits (123), Expect = 2e-07
Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 33/145 (22%)
Query: 905 DKGKLEDAVTYGTKALA-KLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 963
+G ++A+ Y KAL P A A+ L Y GD+++A Y QKAL+
Sbjct: 13 KQGDYDEAIEYYQKALELD------PRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Query: 964 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYI 1023
++ P + +++ +L YY+ + A++Y ++AL L P +A +
Sbjct: 64 LD--------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWY 107
Query: 1024 NVAMMEEGLGNVHVALRYLHKALKC 1048
N LGN + +A++
Sbjct: 108 N-------LGNAYYKQGDYDEAIEY 125
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 48.9 bits (118), Expect = 1e-06
Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 24/138 (17%)
Query: 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTE 994
A A+ L Y GD+++A Y QKAL+++ P + +++ +L YY+ +
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PRSAEAWYNLGNAYYKQGDYD 52
Query: 995 LALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054
A++Y ++AL L P +A + N+ G+ A+ Y KAL+ +
Sbjct: 53 EAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD----- 99
Query: 1055 PDHIQTAASYHAIAIALS 1072
P A +++ + A
Sbjct: 100 PRS---AEAWYNLGNAYY 114
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 43.1 bits (103), Expect = 1e-04
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 18/103 (17%)
Query: 905 DKGKLEDAVTYGTKALA-KLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 963
+G ++A+ Y KAL P A A+ L Y GD+++A Y QKAL+
Sbjct: 47 KQGDYDEAIEYYQKALELD------PRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALE 97
Query: 964 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006
++ P + +++ +L YY+ + A++Y ++AL L
Sbjct: 98 LD--------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 4e-07
Identities = 23/145 (15%), Positives = 40/145 (27%), Gaps = 6/145 (4%)
Query: 904 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 963
L K E + K L + + Y + + +A + G + ++ L
Sbjct: 126 LKKVDYEYCILELKKLLNQQLTGIDVYQNLYI--ENAIANIYAENGYLKKGIDLFEQILK 183
Query: 964 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYI 1023
E L + +K + A Y E +L V +A+ + S Y
Sbjct: 184 QLE-ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI--NSMALIGQLYY 240
Query: 1024 NVAMMEEGLGN-VHVALRYLHKALK 1047
L KA
Sbjct: 241 QRGECLRKLEYEEAEIEDAYKKASF 265
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 51.3 bits (124), Expect = 4e-07
Identities = 28/171 (16%), Positives = 51/171 (29%), Gaps = 41/171 (23%)
Query: 905 DKGKLEDAVTYGTKALA-KLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 963
G ++ ++LA P + ++L + ++ A K +
Sbjct: 54 KTGAVDRGTELLERSLADA------PDN---VKVATVLGLTYVQVQKYDLAVPLLIKVAE 104
Query: 964 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYI 1023
N P L V L + A+ K AL L PN +
Sbjct: 105 AN--------PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--------RPNEGKVHR 148
Query: 1024 NVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLM 1074
+A E +G AL + KA + + ++ L+L+
Sbjct: 149 AIAFSYEQMGRHEEALPHFKKANELD-----EGA----------SVELALV 184
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 51.3 bits (124), Expect = 4e-07
Identities = 27/169 (15%), Positives = 50/169 (29%), Gaps = 36/169 (21%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
G+ AV + + L + TG ++ T +++L
Sbjct: 20 KAGRYSQAVMLLEQVYDA-----DAFD---VDVALHLGIAYVKTGAVDRGTELLERSLAD 71
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 1024
PD +K L + Y ++Q +LA+ + + +P
Sbjct: 72 A--------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFR 115
Query: 1025 VAMMEEGLGNVHVALRYLHKALKC-NQRL-LGPDHIQTAASYHAIAIAL 1071
LG L +A+ L L P+ + AIA +
Sbjct: 116 -------LGVALDNLGRFDEAIDSFKIALGLRPNE---GKVHRAIAFSY 154
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 1e-05
Identities = 17/146 (11%), Positives = 41/146 (28%), Gaps = 31/146 (21%)
Query: 929 PYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYY 988
Y + G ++QA + ++ D + + L + Y
Sbjct: 5 DIR---QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD--------AFDVDVALHLGIAYV 53
Query: 989 RLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048
+ + + ++R+L P+ LG +V ++ A+
Sbjct: 54 KTGAVDRGTELLERSLAD--------APDNVKVATV-------LGLTYVQVQKYDLAVPL 98
Query: 1049 NQR--LLGPDHIQTAASYHAIAIALS 1072
+ P + + +AL
Sbjct: 99 LIKVAEANPIN---FNVRFRLGVALD 121
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 24/156 (15%), Positives = 45/156 (28%), Gaps = 27/156 (17%)
Query: 902 TALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKA 961
A DK + A+ + H + + + + +A ++
Sbjct: 15 LAADKKDWKGALDAFSAVQ--------DPH---SRICFNIGCMYTILKNMTEAEKAFTRS 63
Query: 962 LDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH-------LTCGPS 1014
++ + +Y + YY+ + +LA+K +K AL L G
Sbjct: 64 INRD--------KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ 115
Query: 1015 HPNTAA-TYINVAMMEEGLGNVHVALRYLHKALKCN 1049
A N+A M A L A
Sbjct: 116 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 4e-06
Identities = 26/197 (13%), Positives = 55/197 (27%), Gaps = 15/197 (7%)
Query: 882 VHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLL 941
K+A G +E+ K G +AV A+ + R A L
Sbjct: 66 YQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ--IFTHRGQFRRGANFKFEL 123
Query: 942 AVVLYH-TGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYV 1000
+L + D+ +A + A + ++ + K + A A
Sbjct: 124 GEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIY 181
Query: 1001 KRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT 1060
+ + + S + ++ + + + A R L + +
Sbjct: 182 SKLIK-SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNF 240
Query: 1061 AASYHAIAIALSLMEAY 1077
SL++A
Sbjct: 241 LK---------SLIDAV 248
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 4e-06
Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 9/102 (8%)
Query: 903 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKAL 962
A + E A + KA+ Y+ A V + F + + +KA+
Sbjct: 18 AYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69
Query: 963 DINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRAL 1004
++ RE D+ K+ + + LA+++ R+L
Sbjct: 70 EVG-RETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSL 110
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 5e-06
Identities = 20/102 (19%), Positives = 42/102 (41%), Gaps = 9/102 (8%)
Query: 903 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKAL 962
A K + A+ + KA + A V + GD+N+ +KA+
Sbjct: 14 AYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65
Query: 963 DINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRAL 1004
++ RE D+ K+Y + Y++ + + A+ + ++L
Sbjct: 66 EVG-RENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 5e-06
Identities = 27/196 (13%), Positives = 47/196 (23%), Gaps = 55/196 (28%)
Query: 905 DKGKLEDAVTYGTKALA-KLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 963
G A ++ALA + P ++ L + L G+F+ A L+
Sbjct: 55 SLGLRALARNDFSQALAIR------PDM---PEVFNYLGIYLTQAGNFDAAYEAFDSVLE 105
Query: 964 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYI 1023
++ P ++ + + Y +LA + PN +
Sbjct: 106 LD--------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--------DPNDPFRSL 149
Query: 1024 NVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTA---------------------A 1062
L L Q D Q A
Sbjct: 150 W-------LYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKA 202
Query: 1063 SY-HAIAIALSLMEAY 1077
++A L E
Sbjct: 203 DATDNTSLAEHLSETN 218
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 24/171 (14%), Positives = 49/171 (28%), Gaps = 28/171 (16%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
+ E + + LA A+ A V+ G A +AL I
Sbjct: 17 PTLQQEVILARMEQILAS-RALTDDER---AQLLYERGVLYDSLGLRALARNDFSQALAI 72
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 1024
PD + + L ++ + + + A + L L P ++N
Sbjct: 73 R--------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLN 116
Query: 1025 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLME 1075
+ G +A L + + P+ + +A ++
Sbjct: 117 RGIALYYGGRDKLAQDDLLAFYQDD-----PND---PFRSLWLYLAEQKLD 159
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 22/202 (10%), Positives = 43/202 (21%), Gaps = 54/202 (26%)
Query: 905 DKGKLEDAVTYGTKALA-KLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 963
G + A L P + A+ + LY+ G A
Sbjct: 89 QAGNFDAAYEAFDSVLELD------PTY---NYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139
Query: 964 IN-------------ERELGLD------------HPDTMKSYGDLAVF---YYRLQHTEL 995
+ E++L + + + E
Sbjct: 140 DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMER 199
Query: 996 ALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 1055
L + + T + LG++ A A+ N
Sbjct: 200 LKADATDNTSL--------AEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-----V 246
Query: 1056 DHIQTAASYHAIAIALSLMEAY 1077
+ + + LSL+
Sbjct: 247 HN---FVEHRYALLELSLLGQD 265
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 7e-06
Identities = 15/109 (13%), Positives = 33/109 (30%), Gaps = 16/109 (14%)
Query: 941 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYV 1000
+ + + +A + + P+ +++ L + + LA+ +
Sbjct: 23 EGLSMLKLANLAEAALAFEAVCQKE--------PEREEAWRSLGLTQAENEKDGLAIIAL 74
Query: 1001 KRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049
A L P A + +A+ N + AL L L
Sbjct: 75 NHARML--------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 1e-05
Identities = 25/154 (16%), Positives = 45/154 (29%), Gaps = 34/154 (22%)
Query: 905 DKGKLEDAVTYGTKALA-KLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 963
KG LE A++ A P + A + +V G+ ++A ++AL
Sbjct: 96 GKGYLEQALSVLKDAERVN------PRY---APLHLQRGLVYALLGERDKAEASLKQALA 146
Query: 964 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYI 1023
+ D P+ LA Y + + AL +AL P +
Sbjct: 147 LE------DTPEI---RSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRV 189
Query: 1024 NVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 1057
+ + +A + H
Sbjct: 190 R-------YASALLLKGKAEEAARAAALEHHHHH 216
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 4e-04
Identities = 29/156 (18%), Positives = 43/156 (27%), Gaps = 44/156 (28%)
Query: 905 DKGKLEDAVTYGTKALA-KLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 963
G+ + A+T +AL P A LA G N A + +
Sbjct: 17 ALGRYDAALTLFERALKEN------PQD---PEALYWLARTQLKLGLVNPALENGKTLVA 67
Query: 964 INERELGLDHPDTMKSYGDLAVFYYRLQHT-----------ELALKYVKRALYLLHLTCG 1012
P + Y L+ Y L E AL +K A +
Sbjct: 68 RT--------PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV------ 113
Query: 1013 PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048
+P A ++ G V+ L KA
Sbjct: 114 --NPRYAPLHLQ-------RGLVYALLGERDKAEAS 140
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 5e-04
Identities = 25/142 (17%), Positives = 42/142 (29%), Gaps = 28/142 (19%)
Query: 937 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELA 996
L V LY G ++ A ++AL N P ++ LA +L A
Sbjct: 7 NPLRLGVQLYALGRYDAALTLFERALKEN--------PQDPEALYWLARTQLKLGLVNPA 58
Query: 997 LKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 1056
L+ K + P Y+ L +VAL + + + L
Sbjct: 59 LENGKTLVAR--------TPRYLGGYMV-------LSEAYVALYRQAEDRERGKGYLE-- 101
Query: 1057 HIQTAASY-HAIAIALSLMEAY 1077
Q + A + +
Sbjct: 102 --QALSVLKDAERVNPRYAPLH 121
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 2e-05
Identities = 25/222 (11%), Positives = 50/222 (22%), Gaps = 42/222 (18%)
Query: 902 TALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKA 961
++ + +A P A + + +A
Sbjct: 235 GKQALETMQRLLPVLCQAHG-----LPPDQ---VVAIASNIGGKQALETVQRLLPVLCQA 286
Query: 962 LDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAAT 1021
+ PD + + L+ + L + +A L P+
Sbjct: 287 HGLT--------PDQVVAIASHGGGKQALETVQRLLPVLCQAHGL--------TPDQVVA 330
Query: 1022 YINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSV 1081
+ ++ L V L L +A L PD + + +E
Sbjct: 331 IASHDGGKQALETVQRLLPVLCQAHG-----LTPDQVVA---IASNGGGKQALETVQ--- 379
Query: 1082 QHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAA 1123
+ Q L A +A E +
Sbjct: 380 RLLPVLCQAHG-------LTPDQVVAIASNGGKQALETVQRL 414
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 45.1 bits (108), Expect = 2e-05
Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 24/137 (17%)
Query: 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTE 994
A A+ L Y GD+++A Y QKAL+++ P+ +++ +L YY+ +
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDYD 60
Query: 995 LALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054
A++Y ++AL L PN A + N+ G+ A+ Y KAL+ +
Sbjct: 61 EAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD----- 107
Query: 1055 PDHIQTAASYHAIAIAL 1071
P++ A + + A
Sbjct: 108 PNN---AEAKQNLGNAK 121
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 43.5 bits (104), Expect = 6e-05
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 33/132 (25%)
Query: 905 DKGKLEDAVTYGTKALA-KLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 963
+G ++A+ Y KAL P + A A+ L Y GD+++A Y QKAL+
Sbjct: 21 KQGDYDEAIEYYQKALELD------PNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 964 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYI 1023
++ P+ +++ +L YY+ + A++Y ++AL L PN A
Sbjct: 72 LD--------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAKQ 115
Query: 1024 NVAMMEEGLGNV 1035
N LGN
Sbjct: 116 N-------LGNA 120
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 3e-05
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 24/85 (28%)
Query: 550 IAKLEEEKPEREHFVRWELGACWIQHLQDQKNAEKDKKLSKEKAKKLSNEKAKSEM---- 605
IA+ + E E +W + Q ++ E D SK ++ EKAK ++
Sbjct: 74 IAQADRLTQEPESIRKW-------REEQRKRLQELDAA-SKVMEQEWR-EKAKKDLEEWN 124
Query: 606 -----KVEGLGTPLKSLKNNRKKSE 625
+VE K+ NNR +
Sbjct: 125 QRQSEQVE------KNKINNRIADK 143
|
| >3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 5e-04
Identities = 23/145 (15%), Positives = 33/145 (22%), Gaps = 20/145 (13%)
Query: 1578 ASAVPFNPSPAVARASAVAINMTLPPGPGAVTAVAPW-----PVNMTLHPRPATVLPTVN 1632
P + RA+ I +P P P + P+ TV
Sbjct: 95 VPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGR---GTVA 151
Query: 1633 PMCSSPHQPYPSPPSTPNMMQPLPFMYPPYTQPQGVPTSTFPVTTSAFHHNHFSWQCNGN 1692
++ P+ + P PP + P P
Sbjct: 152 AAAAAATASIAGAPTQYPPGRGGP--PPPMGRGAPPPGMMGPP----------PGMRPPM 199
Query: 1693 SNVPEFIPGPFLPGYHPMEFSVPPP 1717
PG P P PPP
Sbjct: 200 GPPMGIPPGRGTPMGMPPPGMRPPP 224
|
| >3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 8e-04
Identities = 24/117 (20%), Positives = 30/117 (25%), Gaps = 4/117 (3%)
Query: 1557 KEKPSVFNPGDTRGLPNRKLSASAVPF-NPSPAVARASAVAINMTLPPGPGAVT---AVA 1612
V G G + + +P P P A + P +T
Sbjct: 90 TGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGT 149
Query: 1613 PWPVNMTLHPRPATVLPTVNPMCSSPHQPYPSPPSTPNMMQPLPFMYPPYTQPQGVP 1669
A P P P P MM P P M PP P G+P
Sbjct: 150 VAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIP 206
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 5e-04
Identities = 28/208 (13%), Positives = 53/208 (25%), Gaps = 51/208 (24%)
Query: 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINE------------RELGLDHPDTMKSYGD 982
A++ L V + GD A AL + R+L D D +
Sbjct: 137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVM 196
Query: 983 LAVFYYRLQHTELALKYVK------RALYLLHLTCG--------------------PSHP 1016
+V + ++ + + A L+ G
Sbjct: 197 DSVRQAK-LAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255
Query: 1017 NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLM-- 1074
+ ++N A + + + AL +A + P L +
Sbjct: 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALD-----PAW---PEPQQREQQLLEFLSR 307
Query: 1075 --EAYPLSVQHEQTTLQILRAKLGPDDL 1100
+ + LQ + L P L
Sbjct: 308 LTSLLESKGKTKPKKLQSMLGSLRPAHL 335
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 7e-04
Identities = 17/111 (15%), Positives = 32/111 (28%), Gaps = 15/111 (13%)
Query: 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQAT 955
++ S+ LD+ +L T + P + Y + AV G +++
Sbjct: 244 IVRHSQHPLDEKQLAALNTEIDNIVTL------PELNNLSIIYQIKAVSALVKGKTDESY 297
Query: 956 IYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006
+D+ + +Y L Y A A L
Sbjct: 298 QAINTGIDLE--------MSWL-NYVLLGKVYEMKGMNREAADAYLTAFNL 339
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1888 | |||
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.9 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.89 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.86 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.84 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.83 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.83 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.82 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.82 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.81 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.8 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.8 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.76 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.72 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.7 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.7 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.69 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.69 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.69 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.68 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.68 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.67 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.66 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.65 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.65 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.65 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.65 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.64 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.63 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.63 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.63 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.63 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.63 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.63 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.62 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.62 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.62 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.62 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.62 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.61 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.61 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.61 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.59 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.59 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.59 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.59 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.59 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.59 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.58 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.58 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.58 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.58 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.58 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.58 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 99.57 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.57 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.56 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.56 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.55 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 99.54 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 99.54 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.53 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.53 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.53 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.52 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.52 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.52 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 99.51 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.51 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.51 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.5 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.48 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.48 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.48 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.47 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.46 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.46 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.45 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.45 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.45 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.44 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.44 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.41 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.41 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.4 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.4 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.39 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.36 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.36 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.35 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.34 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.3 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.3 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.3 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.29 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.27 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.26 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.26 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.25 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.24 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.24 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.23 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.22 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.2 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.2 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.19 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.19 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.18 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.17 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.15 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.15 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.15 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.13 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.13 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.13 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.13 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.12 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.1 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.09 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.06 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.06 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.05 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.04 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.02 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.0 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.99 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.99 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.97 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.97 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.96 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.95 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.95 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.95 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.95 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.94 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.93 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.93 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 98.93 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.92 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.92 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.92 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.92 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.91 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.91 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.9 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 98.89 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.88 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.88 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.86 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.85 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.85 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.85 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.85 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.84 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.83 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.83 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.82 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 98.81 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.81 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.81 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.81 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.8 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.79 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.79 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.78 | |
| 1sgo_A | 139 | HSPC210, protein C14ORF129; HR969, structure, huma | 98.77 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.76 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.75 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.74 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.72 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.7 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.7 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.7 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.69 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.69 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 98.67 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.65 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.63 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.6 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 98.59 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.56 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.5 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.48 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.46 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.43 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.39 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.32 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.31 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.29 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.27 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 98.26 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.25 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.25 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.21 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.2 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.17 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.15 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.15 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.11 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.05 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.0 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.98 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.92 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.84 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 97.84 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.82 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.77 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.72 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 97.65 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.53 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 97.43 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.4 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.37 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.22 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 97.21 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.95 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 96.93 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.72 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 96.64 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 96.61 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.38 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.32 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 96.3 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.22 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.15 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 95.14 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 94.84 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 93.55 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 93.4 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.01 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 92.98 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 92.93 | |
| 3plu_A | 93 | Ubiquitin-like modifier HUB1; ubiquitin-like, HUB- | 92.91 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 92.12 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.91 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 91.38 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.22 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 91.11 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 90.95 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 90.02 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 89.8 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 89.07 | |
| 2wyq_A | 85 | HHR23A, UV excision repair protein RAD23 homolog A | 88.45 | |
| 1wyw_B | 97 | Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho | 88.09 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 87.63 | |
| 4dwf_A | 90 | HLA-B-associated transcript 3; ubiquitin-like doma | 87.29 | |
| 2kdb_A | 99 | Homocysteine-responsive endoplasmic reticulum- res | 87.24 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 86.93 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 86.83 | |
| 1o9d_A | 260 | 14-3-3-like protein C; protein-binding, fusicoccin | 85.91 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 85.75 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 85.64 | |
| 3mtn_B | 85 | UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit | 85.0 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 84.76 | |
| 3phx_B | 79 | Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu | 84.23 | |
| 4a20_A | 98 | Ubiquitin-like protein MDY2; protein binding, GET- | 84.16 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 84.12 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 84.11 | |
| 3v6c_B | 91 | Ubiquitin; structural genomics, structural genomic | 83.66 | |
| 4eew_A | 88 | Large proline-rich protein BAG6; ubiquitin-like fo | 83.62 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 83.02 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 82.96 | |
| 1ndd_A | 76 | NEDD8, protein (ubiquitin-like protein NEDD8); pro | 82.94 | |
| 3m62_B | 106 | UV excision repair protein RAD23; armadillo-like r | 82.87 | |
| 4hcn_B | 98 | Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas | 82.33 | |
| 1j8c_A | 125 | Ubiquitin-like protein hplic-2; ubiquitin-like dom | 82.25 | |
| 2dzi_A | 81 | Ubiquitin-like protein 4A; GDX, structural genomic | 82.13 | |
| 3dbh_I | 88 | NEDD8; cell cycle, activating enzyme, apoptosis, m | 82.09 | |
| 1wh3_A | 87 | 59 kDa 2'-5'-oligoadenylate synthetase like protei | 81.82 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 81.77 | |
| 3a9j_A | 76 | Ubiquitin; protein complex, cytoplasm, isopeptide | 81.54 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 81.25 | |
| 3n3k_B | 85 | Ubiquitin; hydrolase, protease, thiol protease, DU | 81.2 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 81.08 | |
| 2uyz_B | 79 | Small ubiquitin-related modifier 1; sumoylation, c | 81.08 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 80.61 |
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-21 Score=222.20 Aligned_cols=286 Identities=22% Similarity=0.226 Sum_probs=230.5
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000191 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 969 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~l 969 (1888)
...+..++.+|..++..|++++|+.+|++++.+.....+.+++..+.++..+|.+|..+|++++|+.++++++.+.++..
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 45678899999999999999999999999999999887778899999999999999999999999999999999999998
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 970 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
+.+++....++.++|.+|..+|++++|+.+|++++.+.....+.+++....++.++|.+|...|++++|+.+|++++++.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000191 1050 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK-LGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTR 1128 (1888)
Q Consensus 1050 ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~-LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~ 1128 (1888)
....+.+++....++..+|.+|..+|++++|+.++++++++.... ++..+.........+..+................
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 998888899999999999999999999999999999999887652 2222221111111111111110000000000000
Q ss_pred CCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000191 1129 KPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1129 ~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
..........++....++..+|.+|..+|++++|+.+|++++++..+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 264 GGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp C---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 01111222345567889999999999999999999999999998753
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5.6e-22 Score=222.44 Aligned_cols=268 Identities=21% Similarity=0.195 Sum_probs=219.6
Q ss_pred HHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 000191 904 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 983 (1888)
Q Consensus 904 l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nL 983 (1888)
...|++++|+.+|++|+.++.+..+.+++..+.++..+|.+|..+|++++|+.++++++.+.++..|.+++....++.+|
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 45799999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 000191 984 AVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAAS 1063 (1888)
Q Consensus 984 A~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~a 1063 (1888)
|.+|..+|++++|+.+|++++.+.....+.++|....++.++|.+|..+|++++|+.+|++++++.+...+.+++..+.+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988889999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHH--HHHHHHHHHhcCCCCchhhhhcCCc
Q 000191 1064 YHAIAIALSLMEAYPLSVQHEQTTLQILRAKL-GPDDLRTQDAAAWLEYFESK--AFEQQEAARNGTRKPDASIASKGHL 1140 (1888)
Q Consensus 1064 l~nLA~ay~~lGdydeAle~lqkALeI~kk~L-G~dh~~tl~a~~~La~L~qk--a~e~AeAl~~~~~~~~~~~as~~~~ 1140 (1888)
+.++|.+|..+|++++|+.++++++.+..... +..+.........+..+... ....+..+... ..........++
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 249 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEY--GSWYKACKVDSP 249 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC--------------CCCCCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHH--HHHHHhcCCCCH
Confidence 99999999999999999999999999876532 22222111111111111110 00000000000 000111223445
Q ss_pred cHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 000191 1141 SVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 1173 (1888)
Q Consensus 1141 svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~ 1173 (1888)
....++..+|.+|..+|++++|+.+|++++++.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 677889999999999999999999999999864
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.5e-20 Score=218.75 Aligned_cols=266 Identities=11% Similarity=0.025 Sum_probs=217.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 973 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh 973 (1888)
..++..|..++..|++++|+.+|++|+.++... .+.+..+.++..+|.+|+.+|++++|+.++++|+.++++. +...
T Consensus 104 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~ 180 (383)
T 3ulq_A 104 YFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH-EAYN 180 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-STTH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-ccch
Confidence 455668999999999999999999999987664 4566788999999999999999999999999999998874 2235
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 000191 974 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 1053 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~ 1053 (1888)
+..+.++.+||.+|..+|++++|+.+|++|+.+.... .+++..+.++.++|.+|..+|++++|+.+|++|+++.+..
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~- 257 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES- 257 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-
Confidence 6778999999999999999999999999999998875 4567788899999999999999999999999999998765
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH-----HHHHHHHHhcCC
Q 000191 1054 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKA-----FEQQEAARNGTR 1128 (1888)
Q Consensus 1054 G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka-----~e~AeAl~~~~~ 1128 (1888)
.+.+..+.++.++|.+|..+|++++|+.++++|+++...... +........++.+.... ...+..+....
T Consensus 258 -~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~- 332 (383)
T 3ulq_A 258 -NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGD---VIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK- 332 (383)
T ss_dssp -TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-
T ss_pred -ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-
Confidence 222567899999999999999999999999999999876532 22222233344333222 22222222221
Q ss_pred CCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhccccC
Q 000191 1129 KPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQ 1178 (1888)
Q Consensus 1129 ~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~q 1178 (1888)
.......+++..+|.+|..+|++++|+.+|++++++.+++..
T Consensus 333 --------~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~ 374 (383)
T 3ulq_A 333 --------MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG 374 (383)
T ss_dssp --------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred --------cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence 223356778999999999999999999999999999999883
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.7e-19 Score=213.33 Aligned_cols=274 Identities=12% Similarity=0.085 Sum_probs=225.3
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+..++.+|..++..|++++|+.+|++++.+.... .+++..+.++..+|.+|..+|++++|+.++++++.+.++. .
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~ 160 (411)
T 4a1s_A 85 LSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM--NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--G 160 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--h
Confidence 35678889999999999999999999999998776 4567888999999999999999999999999999998875 3
Q ss_pred CChhhHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC
Q 000191 972 DHPDTMKSYGDLAVFYYRLQH-----------------TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN 1034 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGd-----------------yeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~ 1034 (1888)
+++....++.++|.+|..+|+ +++|+.+|++++.+.... .+++..+.++.++|.+|..+|+
T Consensus 161 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~ 238 (411)
T 4a1s_A 161 DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDL--GDRGAQGRACGNLGNTYYLLGD 238 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCC
Confidence 567788999999999999999 999999999999998775 3457788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-
Q 000191 1035 VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFE- 1113 (1888)
Q Consensus 1035 yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~- 1113 (1888)
+++|+.+|++++++.... .+....+.++.++|.+|..+|++++|+.++++++.+.... .++.....++..++.+.
T Consensus 239 ~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~ 314 (411)
T 4a1s_A 239 FQAAIEHHQERLRIAREF--GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL--GEREVEAQSCYSLGNTYT 314 (411)
T ss_dssp HHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHH
Confidence 999999999999998775 3556677899999999999999999999999999998764 33333444555555443
Q ss_pred -HHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1114 -SKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1114 -qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
.+.++.+..+..... .......+......++..+|.+|..+|++++|+.+|++++++.++++
T Consensus 315 ~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 377 (411)
T 4a1s_A 315 LLHEFNTAIEYHNRHL--AIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXX 377 (411)
T ss_dssp HTTCHHHHHHHHHHHH--HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHH
T ss_pred HcCCHHHHHHHHHHHH--HHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc
Confidence 334444433332221 11111222335667899999999999999999999999999998887
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.6e-19 Score=211.62 Aligned_cols=265 Identities=16% Similarity=0.058 Sum_probs=213.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...++..|..++..|++++|+.+|++|+.+...+ .+.+..+.++.+||.+|+.+|++++|+.++++|+.+.++.. ..
T Consensus 101 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~-~~ 177 (378)
T 3q15_A 101 YYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHP-LY 177 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTST-TC
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCC-Cc
Confidence 4567788999999999999999999999987765 45677899999999999999999999999999999987642 22
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
....+.++.+||.+|..+|++++|+.+|++|+.+.... .+....+.++.++|.+|..+|++++|+.+|++|+++.+..
T Consensus 178 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 255 (378)
T 3q15_A 178 SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI--QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK 255 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 34678999999999999999999999999999998764 3345678899999999999999999999999999998765
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH-----HHHHHHHHhcC
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKA-----FEQQEAARNGT 1127 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka-----~e~AeAl~~~~ 1127 (1888)
.++..+.++.++|.+|..+|++++|+.++++|+++......+.... ....+..+.... ...+......
T Consensus 256 ---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~l~~ly~~~~~~~~~~~al~~~~~- 328 (378)
T 3q15_A 256 ---VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE---LFLFLQAVYKETVDERKIHDLLSYFEK- 328 (378)
T ss_dssp ---CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHH---HHHHHHHHHSSSCCHHHHHHHHHHHHH-
T ss_pred ---CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH---HHHHHHHHHhCCCcHHHHHHHHHHHHh-
Confidence 3445588999999999999999999999999999875543322222 223333332221 2222222221
Q ss_pred CCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1128 RKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1128 ~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
......+.+++..+|.+|..+|++++|+.+|++++++.+++.
T Consensus 329 --------~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~ 370 (378)
T 3q15_A 329 --------KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDIL 370 (378)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred --------CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 112235667889999999999999999999999999999887
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-18 Score=198.28 Aligned_cols=274 Identities=14% Similarity=0.086 Sum_probs=218.5
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+..++.+|..++..|++++|+.++++++.+.... .+.+..+.++..+|.+|..+|++++|+.++++++.+.++. .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~ 117 (338)
T 3ro2_A 42 LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--N 117 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh--c
Confidence 36778889999999999999999999999998776 4567778999999999999999999999999999998874 3
Q ss_pred CChhhHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQH--------------------TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 1031 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGd--------------------yeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~ 1031 (1888)
+......++.++|.+|..+|+ +++|+.++++++.+.... .+.+..+.++.++|.+|..
T Consensus 118 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~ 195 (338)
T 3ro2_A 118 DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL--GDRAAQGRAFGNLGNTHYL 195 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHH
Confidence 455667899999999999999 999999999999988775 3457778899999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000191 1032 LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY 1111 (1888)
Q Consensus 1032 lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~ 1111 (1888)
+|++++|+.++++++++.... .+....+.++..+|.+|...|++++|+.++++++.+.... .+......+...++.
T Consensus 196 ~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~ 271 (338)
T 3ro2_A 196 LGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGN 271 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHH
Confidence 999999999999999998775 4556678899999999999999999999999999998764 233344445555554
Q ss_pred HH--HHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1112 FE--SKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1112 L~--qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
+. .+..+.+........ .......+......++..+|.+|..+|++++|+.+|++++++.++++
T Consensus 272 ~~~~~g~~~~A~~~~~~a~--~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 337 (338)
T 3ro2_A 272 TYTLLQDYEKAIDYHLKHL--AIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 337 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHH--HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-----
T ss_pred HHHHhcCHHHHHHHHHHHH--HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhc
Confidence 43 334444433322211 11111222335567899999999999999999999999999988765
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-18 Score=206.75 Aligned_cols=274 Identities=13% Similarity=0.093 Sum_probs=224.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+..++.+|..++..|++++|+.++++++.+.... .+.+..+.++..+|.+|..+|++++|+.++++++.+..+. .
T Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~ 121 (406)
T 3sf4_A 46 LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--N 121 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--c
Confidence 36778899999999999999999999999998775 4567788999999999999999999999999999998875 3
Q ss_pred CChhhHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQH--------------------TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 1031 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGd--------------------yeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~ 1031 (1888)
+......++.++|.+|...|+ +++|+.+|.+++.+.... .+++..+.++.++|.+|..
T Consensus 122 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~ 199 (406)
T 3sf4_A 122 DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL--GDRAAQGRAFGNLGNTHYL 199 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHHH
Confidence 456677899999999999999 999999999999998775 4567788999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000191 1032 LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY 1111 (1888)
Q Consensus 1032 lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~ 1111 (1888)
+|++++|+.+|++++++.... .+....+.++.++|.+|..+|++++|+.++++++.+.... .++.....+...++.
T Consensus 200 ~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~ 275 (406)
T 3sf4_A 200 LGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGN 275 (406)
T ss_dssp HTBHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC--cCchHHHHHHHHHHH
Confidence 999999999999999998775 4556778899999999999999999999999999998764 233444455555554
Q ss_pred HHH--HHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1112 FES--KAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1112 L~q--ka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
+.. +.++.+........ .......+......++..+|.+|..+|++++|+.+|++++++...++
T Consensus 276 ~~~~~g~~~~A~~~~~~a~--~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 341 (406)
T 3sf4_A 276 TYTLLQDYEKAIDYHLKHL--AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 341 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHH--HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCcHHHHHHHHHHHH--HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 443 34444433322211 11111222335577899999999999999999999999999988765
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-18 Score=206.74 Aligned_cols=273 Identities=16% Similarity=0.151 Sum_probs=221.3
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000191 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHR-MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 968 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhp-e~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~ 968 (1888)
...+..++.+|..++..|++++|+.+|++++.+ .+.++ ..+.++..+|.+|+.+|++++|+.++++++.+.++.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 119 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQA-----GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM 119 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-----cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 456788899999999999999999999999987 23333 356789999999999999999999999999998875
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC--------------
Q 000191 969 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN-------------- 1034 (1888)
Q Consensus 969 lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~-------------- 1034 (1888)
.+++....++.++|.+|..+|++++|+.+|++++.+.... .+++..+.++.++|.+|..+|+
T Consensus 120 --~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a 195 (411)
T 4a1s_A 120 --NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDV 195 (411)
T ss_dssp --TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHH
T ss_pred --cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhh
Confidence 4567888999999999999999999999999999998775 3567889999999999999999
Q ss_pred ---HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000191 1035 ---VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY 1111 (1888)
Q Consensus 1035 ---yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~ 1111 (1888)
+++|+.+|++++++.... .+.+..+.++.++|.+|..+|++++|+.++++++++.... .+......++..++.
T Consensus 196 ~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~ 271 (411)
T 4a1s_A 196 KEALTRAVEFYQENLKLMRDL--GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF--GDRAAERRANSNLGN 271 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHH
Confidence 999999999999998776 4567788899999999999999999999999999998774 233334445555554
Q ss_pred HHH--HHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1112 FES--KAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1112 L~q--ka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
+.. +.++.+......... ......+......++..+|.+|..+|++++|+.+|++++.+.....
T Consensus 272 ~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 272 SHIFLGQFEDAAEHYKRTLA--LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp HHHTTTCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCcCHHHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 433 334443333222111 1111122234567899999999999999999999999999988764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.2e-18 Score=192.24 Aligned_cols=272 Identities=14% Similarity=0.084 Sum_probs=217.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+..++..|..++..|++++|+.+|++++... ..+....+.++..+|.+|..+|++++|+.++++++.+.++. .
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~ 77 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--G 77 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--c
Confidence 35677888999999999999999999999871 22233346899999999999999999999999999998875 4
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC-----------------
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN----------------- 1034 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~----------------- 1034 (1888)
+.+....++.++|.+|..+|++++|+.++++++.+.... .+.+..+.++.++|.+|..+|+
T Consensus 78 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a 155 (338)
T 3ro2_A 78 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDV 155 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHH
T ss_pred ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhH
Confidence 567778999999999999999999999999999998774 3456678899999999999999
Q ss_pred ---HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000191 1035 ---VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY 1111 (1888)
Q Consensus 1035 ---yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~ 1111 (1888)
+++|+.++++++.+.... .+.+..+.++.++|.+|...|++++|+.++++++.+.... .+......+...++.
T Consensus 156 ~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~ 231 (338)
T 3ro2_A 156 RNALQAAVDLYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGN 231 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHH
Confidence 999999999999998776 4567788899999999999999999999999999998764 233334444455543
Q ss_pred H--HHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1112 F--ESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1112 L--~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
+ ..+..+.+........ .......+......++..+|.+|..+|++++|+.++++++.+.....
T Consensus 232 ~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 232 AYIFLGEFETASEYYKKTL--LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHH--HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHH--HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 3 3444444443332211 11111122334577899999999999999999999999999987764
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.8e-18 Score=200.77 Aligned_cols=271 Identities=14% Similarity=0.092 Sum_probs=218.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..++..|..++..|++++|+.+|++++.+. ..+....+.++..+|.+|+.+|++++|+.++++|+.+.++. .+
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~ 82 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GD 82 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--cc
Confidence 5567888999999999999999999999871 22333357899999999999999999999999999998874 45
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC------------------
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN------------------ 1034 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~------------------ 1034 (1888)
.+..+.++.++|.+|..+|++++|+.++++++.+.... .+.+..+.++.++|.+|...|+
T Consensus 83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~ 160 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVR 160 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHH
Confidence 67788999999999999999999999999999998775 2446678899999999999999
Q ss_pred --HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000191 1035 --VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF 1112 (1888)
Q Consensus 1035 --yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L 1112 (1888)
+++|+.+|++++++.... .+.+..+.++.++|.+|..+|++++|+.++++++.+.... .+......+...++.+
T Consensus 161 ~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~ 236 (406)
T 3sf4_A 161 DALQAAVDFYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNA 236 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHH
Confidence 999999999999998776 4567788999999999999999999999999999998764 3333444455555544
Q ss_pred H--HHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1113 E--SKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1113 ~--qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
. .+.++.+........ .......+......++..+|.+|..+|++++|+.+|++++++.....
T Consensus 237 ~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 301 (406)
T 3sf4_A 237 YIFLGEFETASEYYKKTL--LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301 (406)
T ss_dssp HHHTTCHHHHHHHHHHHH--HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCChHHHHHHHHHHH--HHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC
Confidence 3 344444433332211 11111122334577899999999999999999999999999987764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=7.1e-18 Score=189.02 Aligned_cols=201 Identities=22% Similarity=0.206 Sum_probs=187.4
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000191 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 969 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~l 969 (1888)
...+..++.+|..++..|++++|+.+|++++.+..+.+|.+++..+.++..||.+|..+|++++|+.++++++.+.++..
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 45577888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 970 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
+.+++....++.++|.+|..+|++++|+.+|++++.++....+.+++..+.++.++|.+|..+|++++|+.+|++++++.
T Consensus 120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 199 (283)
T 3edt_B 120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA 199 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999899999999999999999999999999999999999985
Q ss_pred HHh-----------------------------------------cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000191 1050 QRL-----------------------------------------LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 1088 (1888)
Q Consensus 1050 ek~-----------------------------------------~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkAL 1088 (1888)
... .+..++..+.++..||.+|..+|++++|+.++++++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 200 HEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp HHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 442 123568888999999999999999999999999998
Q ss_pred HH
Q 000191 1089 QI 1090 (1888)
Q Consensus 1089 eI 1090 (1888)
++
T Consensus 280 ~~ 281 (283)
T 3edt_B 280 RN 281 (283)
T ss_dssp TT
T ss_pred Hh
Confidence 65
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-16 Score=180.08 Aligned_cols=203 Identities=23% Similarity=0.245 Sum_probs=186.4
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000191 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 969 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~l 969 (1888)
...+..++.+|..+...|++++|+.+|++++.+.....+.+++..+.++..+|.+|..+|++++|+.++++++.+.++..
T Consensus 66 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (311)
T 3nf1_A 66 PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 145 (311)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhc
Confidence 44577788899999999999999999999999999998888999999999999999999999999999999999999998
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 970 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
+.+++....++.++|.+|...|++++|+.+|++++.++....+.+++....++.++|.+|..+|++++|+.+|++++++.
T Consensus 146 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 225 (311)
T 3nf1_A 146 GKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA 225 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999998888899999999999999999999999999999999875
Q ss_pred HHh-----------------------------------------cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000191 1050 QRL-----------------------------------------LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 1088 (1888)
Q Consensus 1050 ek~-----------------------------------------~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkAL 1088 (1888)
... ....++..+.++..+|.+|..+|++++|+.++++|+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 226 HEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp HHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 432 112467888999999999999999999999999999
Q ss_pred HHHH
Q 000191 1089 QILR 1092 (1888)
Q Consensus 1089 eI~k 1092 (1888)
++..
T Consensus 306 ~l~~ 309 (311)
T 3nf1_A 306 RSRK 309 (311)
T ss_dssp HHHC
T ss_pred HHhh
Confidence 8753
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.6e-17 Score=203.34 Aligned_cols=161 Identities=18% Similarity=0.140 Sum_probs=153.7
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000191 889 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 968 (1888)
Q Consensus 889 ~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~ 968 (1888)
....+..+++.+..+..+|+|++|+.+|+++|++.++++|.+|+.++.++.+||.+|..+|+|++|+.+++++|.+.+++
T Consensus 305 ~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~ 384 (490)
T 3n71_A 305 MIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKL 384 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 34456677788888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000191 969 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 969 lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
+|.+||.++.+|+|||.+|..+|+|++|+.+|++|+++.+..+|++||.++.++.+++.++..++.|++|...|+++.+.
T Consensus 385 lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 385 YHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred H
Q 000191 1049 N 1049 (1888)
Q Consensus 1049 ~ 1049 (1888)
.
T Consensus 465 ~ 465 (490)
T 3n71_A 465 A 465 (490)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.1e-16 Score=173.94 Aligned_cols=197 Identities=21% Similarity=0.167 Sum_probs=158.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..++.+|..++..|++++|+.+|++++.+ .|....++.++|.+|..+|++++|+.++++++.+
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 68 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKE--------NPQDPEALYWLARTQLKLGLVNPALENGKTLVAR-------- 68 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 456788899999999999999999999875 5677789999999999999999999999999987
Q ss_pred ChhhHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHH
Q 000191 973 HPDTMKSYGDLAVFYYRL-----------QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRY 1041 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~l-----------GdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~ 1041 (1888)
.|....++.+||.+|..+ |++++|+.+|++++.+ .|....++.++|.+|..+|++++|+.+
T Consensus 69 ~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~A~~~ 140 (217)
T 2pl2_A 69 TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--------NPRYAPLHLQRGLVYALLGERDKAEAS 140 (217)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChHHHHHH
Confidence 466788999999999999 9999999999999986 355667889999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 000191 1042 LHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQE 1121 (1888)
Q Consensus 1042 LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~Ae 1121 (1888)
|++|+++. ....+++++|.+|..+|++++|+..|++++++ .+++.
T Consensus 141 ~~~al~~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~P~~~--------------------- 185 (217)
T 2pl2_A 141 LKQALALE---------DTPEIRSALAELYLSMGRLDEALAQYAKALEQ-----APKDL--------------------- 185 (217)
T ss_dssp HHHHHHHC---------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTCH---------------------
T ss_pred HHHHHhcc---------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCh---------------------
Confidence 99999873 23567889999999999999999999998854 23322
Q ss_pred HHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000191 1122 AARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVA 1170 (1888)
Q Consensus 1122 Al~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKAL 1170 (1888)
.++..+|.++..+|++++|+.+|+++.
T Consensus 186 ----------------------~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 186 ----------------------DLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp ----------------------HHHHHHHHHHTC---------------
T ss_pred ----------------------HHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 346677788888899999988887764
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.2e-16 Score=197.20 Aligned_cols=151 Identities=11% Similarity=0.015 Sum_probs=144.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 000191 941 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAA 1020 (1888)
Q Consensus 941 LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~ 1020 (1888)
.+..+..+|+|++|+.+++++|.+.++++|.+|+.++.++++||.+|..+|+|++|+.++++++.++++.+|++||+++.
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000191 1021 TYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1021 a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
+++|||.+|..+|+|++|+.+|++|+++.+..+|++|+.++.++.+|++++..++.|++|...|+++.+.+
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999886543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.6e-16 Score=184.09 Aligned_cols=248 Identities=13% Similarity=0.073 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 973 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh 973 (1888)
..++.+|..++..|++++|+.+|++++.. .|..+.++..+|.+|..+|++++|+.+|++++.+ +
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~ 129 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQ--------DPGDAEAWQFLGITQAENENEQAAIVALQRCLEL--------Q 129 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------C
Confidence 44677899999999999999999999987 4556789999999999999999999999999987 4
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh--hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 974 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP--NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP--~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
|....++.+||.+|..+|++++|+.+|++++.+.......... ..+.++.++|.+|...|++++|+.+|++++++.
T Consensus 130 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-- 207 (365)
T 4eqf_A 130 PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-- 207 (365)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS--
T ss_pred CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC--
Confidence 5667889999999999999999999999999874332111000 123455677999999999999999999999873
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 000191 1052 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD 1131 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~ 1131 (1888)
++. ....++.++|.+|..+|++++|+.++++++++ .+++......+..+ +...+.++.+..........
T Consensus 208 ---p~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~- 276 (365)
T 4eqf_A 208 ---GDM-IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV-----RPEDYSLWNRLGAT-LANGDRSEEAVEAYTRALEI- 276 (365)
T ss_dssp ---CSS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHH-
T ss_pred ---cCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhc-
Confidence 321 13567889999999999999999999999976 45565543333222 33444455554443321110
Q ss_pred hhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1132 ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1132 ~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
.+....++..+|.+|..+|++++|+.+|++++++.....
T Consensus 277 -------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 315 (365)
T 4eqf_A 277 -------QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSR 315 (365)
T ss_dssp -------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-
T ss_pred -------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccC
Confidence 123366899999999999999999999999999998765
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=4e-15 Score=165.02 Aligned_cols=239 Identities=13% Similarity=0.078 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
..+..++.+|..++..|++++|+.+|++++... ....++..+|.+|..+|++++|+.++++++.+.... +
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~ 72 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH---------KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM-R 72 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-c
Confidence 457889999999999999999999999999872 224689999999999999999999999999987653 2
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000191 971 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
.+.+....++.++|.+|..+|++++|+.+|++++.+. +. +.++..+|++++|+.++++++..
T Consensus 73 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~--------~~~~~~~~~~~~a~~~~~~~~~~-- 134 (258)
T 3uq3_A 73 ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--------RT--------ADILTKLRNAEKELKKAEAEAYV-- 134 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------CC--------HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--------ch--------hHHHHHHhHHHHHHHHHHHHHHc--
Confidence 3444557899999999999999999999999999852 11 33455556666777777666653
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 1051 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKP 1130 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~ 1130 (1888)
.+....++..+|.+|...|++++|+.++++++.+ .+.+......+..+ ++..+.++.+..........
T Consensus 135 ------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 135 ------NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR-----APEDARGYSNRAAA-LAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp ------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHH
T ss_pred ------CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CcccHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHh
Confidence 2445566666677777777777777777666653 23333322222111 22233333333222211000
Q ss_pred chhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1131 DASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1131 ~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
.+....++..+|.+|..+|++++|+.+|++++++..+..
T Consensus 203 --------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 241 (258)
T 3uq3_A 203 --------DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN 241 (258)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhc
Confidence 112245788999999999999999999999999997665
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.4e-16 Score=176.49 Aligned_cols=243 Identities=11% Similarity=0.045 Sum_probs=181.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 973 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh 973 (1888)
..++..|..++..|++++|+.+|++++.. .|....++..+|.+|+.+|++++|+.++++++.. ..+.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~ 70 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK--------KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-----VNAT 70 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHT--------TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-----SCTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----cCch
Confidence 45778899999999999999999999876 2333458899999999999999999999999873 2333
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 000191 974 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 1053 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~ 1053 (1888)
.....+|.++|.+|..+|++++|+.+|++++.+ +|....++.++|.+|..+|++++|+.+|++++++
T Consensus 71 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----- 137 (272)
T 3u4t_A 71 KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR--------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP----- 137 (272)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-----
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-----
Confidence 344788999999999999999999999999986 2444567899999999999999999999999876
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH--HHHH-----HHHHhc
Q 000191 1054 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKA--FEQQ-----EAARNG 1126 (1888)
Q Consensus 1054 G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka--~e~A-----eAl~~~ 1126 (1888)
.+....+++++|..+...+++++|+.++++++++ .+++.........+....... .+.+ +++...
T Consensus 138 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 209 (272)
T 3u4t_A 138 ---TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL-----KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC 209 (272)
T ss_dssp ---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred ---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence 2334577889995555567999999999999875 355544333332222211110 1111 111111
Q ss_pred CCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000191 1127 TRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1127 ~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
...+. .......+++..+|.+|..+|++++|+.+|++++++...
T Consensus 210 ~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 253 (272)
T 3u4t_A 210 APGGA-----KYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPT 253 (272)
T ss_dssp GGGGG-----GGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hcccc-----cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence 00010 001235678999999999999999999999999998654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-14 Score=172.55 Aligned_cols=272 Identities=11% Similarity=-0.020 Sum_probs=206.7
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYH-RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 969 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dh-pe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~l 969 (1888)
..+..+...|..++..|++++|+.++++++... ...+ ...+.++..+|.+|..+|++++|+.++++++.+..+.
T Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~- 86 (373)
T 1hz4_A 12 MHAEFNALRAQVAINDGNPDEAERLAKLALEEL----PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH- 86 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC----CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC----CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc-
Confidence 345667778899999999999999999999863 2222 3356788999999999999999999999999998773
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 970 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
.+......++.++|.+|..+|++++|+.+|++++.+.....+..++....++.++|.+|..+|++++|+.++++++++.
T Consensus 87 -~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 165 (373)
T 1hz4_A 87 -DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL 165 (373)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred -CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 2334556788999999999999999999999999999887666668888899999999999999999999999999987
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHH-HHHHHHH--HHHHHHHHHHHHHHhc
Q 000191 1050 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQ-DAAAWLE--YFESKAFEQQEAARNG 1126 (1888)
Q Consensus 1050 ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl-~a~~~La--~L~qka~e~AeAl~~~ 1126 (1888)
... + ....+.++..+|.++...|++++|..++++++.+.... + .+.... .....+. ++..+..+.+......
T Consensus 166 ~~~-~--~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 240 (373)
T 1hz4_A 166 SSY-Q--PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG-K-YHSDWISNANKVRVIYWQMTGDKAAAANWLRH 240 (373)
T ss_dssp TTS-C--GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-C-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcc-C--cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-C-cchhHHHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 543 2 22355788899999999999999999999999886432 1 121111 1111122 3345555555555444
Q ss_pred CCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1127 TRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1127 ~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
....... ........+..++.++..+|++++|+.++++++.+....+
T Consensus 241 a~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~ 287 (373)
T 1hz4_A 241 TAKPEFA----NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLR 287 (373)
T ss_dssp SCCCCCT----TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCC----cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc
Confidence 3322211 1111123567889999999999999999999998877643
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=4e-15 Score=177.83 Aligned_cols=236 Identities=17% Similarity=0.181 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..++.+|..+...|++++|+.+|++++.+ .|....++..+|.+|..+|++++|+..|++++.+
T Consensus 67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------- 130 (388)
T 1w3b_A 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRL--------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY-------- 130 (388)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--------
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 567888899999999999999999999886 4566678999999999999999999999999876
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
+|+...++.++|.+|..+|++++|+.+|++++.+ +|....++.++|.+|...|++++|+.+|++++++.
T Consensus 131 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--- 199 (388)
T 1w3b_A 131 NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--- 199 (388)
T ss_dssp CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---
T ss_pred CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Confidence 4566778889999999999999999999999875 35567788899999999999999999999998863
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDA 1132 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~ 1132 (1888)
+....++.++|.++...|++++|+..+++++.+ .+++......+..+ +...+..+.+.........
T Consensus 200 -----p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~--- 265 (388)
T 1w3b_A 200 -----PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL-----SPNHAVVHGNLACV-YYEQGLIDLAIDTYRRAIE--- 265 (388)
T ss_dssp -----TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH-----CTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH---
T ss_pred -----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CcCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHh---
Confidence 234567888899999999999999999888865 46665443333222 3334444444433322111
Q ss_pred hhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000191 1133 SIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1133 ~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
..+....++..+|.+|..+|++++|+.+|++++++..
T Consensus 266 -----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 302 (388)
T 1w3b_A 266 -----LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302 (388)
T ss_dssp -----TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT
T ss_pred -----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 1122345688889999999999999999999888743
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=4.7e-15 Score=177.23 Aligned_cols=235 Identities=19% Similarity=0.164 Sum_probs=189.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 973 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh 973 (1888)
..+..+|..+...|++++|+.+|++++.. +|..+.++.++|.+|..+|++++|+.+|++++.+ +
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~ 199 (388)
T 1w3b_A 136 CVRSDLGNLLKALGRLEEAKACYLKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--------D 199 (388)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------C
Confidence 44566788999999999999999999986 4666789999999999999999999999999986 4
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 000191 974 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 1053 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~ 1053 (1888)
|....++.++|.++...|++++|+.+|++++.+ +|....++.++|.+|..+|++++|+.+|++++++.
T Consensus 200 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---- 267 (388)
T 1w3b_A 200 PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ---- 267 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC----
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----
Confidence 666789999999999999999999999999986 34556788999999999999999999999999762
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh
Q 000191 1054 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDAS 1133 (1888)
Q Consensus 1054 G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~ 1133 (1888)
++ ...++.++|.+|...|++++|+.++++++++ .+++......+..+ +...+..+.+..........
T Consensus 268 -p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~--- 334 (388)
T 1w3b_A 268 -PH---FPDAYCNLANALKEKGSVAEAEDCYNTALRL-----CPTHADSLNNLANI-KREQGNIEEAVRLYRKALEV--- 334 (388)
T ss_dssp -SS---CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHH-HHTTTCHHHHHHHHHHHTTS---
T ss_pred -CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CcccHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhc---
Confidence 33 3457889999999999999999999999965 46666544433322 23334455554444332221
Q ss_pred hhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000191 1134 IASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1134 ~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
.+....++..+|.+|..+|++++|+.+|++++++..
T Consensus 335 -----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 335 -----FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp -----CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred -----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 123456899999999999999999999999998644
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.5e-15 Score=183.87 Aligned_cols=260 Identities=12% Similarity=0.027 Sum_probs=179.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP-YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~-dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
+..+..+|.++..+|++++|+++|++|+++.....+. .++..+.+|.+||.+|+.+|++++|+.++++++.+.+...+.
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 4556678999999999999999999999998776443 467788899999999999999999999999999999998888
Q ss_pred CChhhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRL--QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~l--GdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
.++....++.++|..+... ++|++|+.+|++|+.+ .++++.....+..++..+...+++++|+..|++|+++.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~-----~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK-----KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 7888889999998877665 5799999999999986 24444332222222222334455555555555555431
Q ss_pred HH-------------hcCC-----------------CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC
Q 000191 1050 QR-------------LLGP-----------------DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDD 1099 (1888)
Q Consensus 1050 ek-------------~~G~-----------------d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh 1099 (1888)
.. ..+. ..+....++.++|.+|...|++++|+.++++|+++ .+++
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~ 280 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY-----IPNN 280 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTC
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh-----CCCh
Confidence 00 0000 01233456788999999999999999999999865 3555
Q ss_pred HHHHHHHHHHHHHHHHH---------------------HHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCC
Q 000191 1100 LRTQDAAAWLEYFESKA---------------------FEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGR 1158 (1888)
Q Consensus 1100 ~~tl~a~~~La~L~qka---------------------~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGd 1158 (1888)
...... ++.++... .+.+...... .....+.....+..+|.+|..+|+
T Consensus 281 ~~~~~~---lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~--------a~~~~~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 281 AYLHCQ---IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKK--------ADEANDNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHH--------HHHHCTTTCCCHHHHHHHHHHTTC
T ss_pred HHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHH--------HhhcCCchhhhhhhHHHHHHHhcc
Confidence 443322 22221111 1111111110 000111223357889999999999
Q ss_pred hHHHHHHHHHHHHHh
Q 000191 1159 NVSTLKRKTYVAKVK 1173 (1888)
Q Consensus 1159 yeEAleyyeKALeL~ 1173 (1888)
+++|+.+|++++.+.
T Consensus 350 ~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999764
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.65 E-value=4.8e-15 Score=174.31 Aligned_cols=254 Identities=13% Similarity=0.099 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..++.+|..++..|++++|+.+|++++.. +|....++..+|.+|..+|++++|+.++++++.+
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------- 127 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHMEAWQYLGTTQAENEQELLAISALRRCLEL-------- 127 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc--------
Confidence 345677899999999999999999999875 4556778999999999999999999999999987
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------------------------------------------h
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL------------------------------------------T 1010 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~k------------------------------------------i 1010 (1888)
.|....++.++|.+|..+|++++|+.+|++++.+... .
T Consensus 128 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 207 (368)
T 1fch_A 128 KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAA 207 (368)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 3556778999999999999999999999988764211 0
Q ss_pred cCCCChh--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000191 1011 CGPSHPN--TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 1088 (1888)
Q Consensus 1011 ~G~dhP~--~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkAL 1088 (1888)
.. ..|. ...++.++|.+|...|++++|+.+|++++++. + ....++.++|.+|...|++++|+.++++++
T Consensus 208 ~~-~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 278 (368)
T 1fch_A 208 VR-LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-----P---NDYLLWNKLGATLANGNQSEEAVAAYRRAL 278 (368)
T ss_dssp HH-HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HH-hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----c---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 00 1223 46788999999999999999999999999873 2 335688899999999999999999999998
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhh---hhcCCccHHHHHHHHHHHHHHcCChHHHHHH
Q 000191 1089 QILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASI---ASKGHLSVSDLLDYINPSHDTKGRNVSTLKR 1165 (1888)
Q Consensus 1089 eI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~---as~~~~svaelL~~Lg~~y~~qGdyeEAley 1165 (1888)
.+ .+++......+..+ ++..+.++.+.............. ....+.....++..++.+|..+|++++|...
T Consensus 279 ~~-----~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 279 EL-----QPGYIRSRYNLGIS-CINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HH-----CTTCHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred Hh-----CCCcHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 75 45555443333322 344444554443332211111000 0111233467899999999999999999999
Q ss_pred HHHHHHHhcccc
Q 000191 1166 KTYVAKVKGNFY 1177 (1888)
Q Consensus 1166 yeKALeL~dSi~ 1177 (1888)
++++++.....+
T Consensus 353 ~~~~l~~~~~~~ 364 (368)
T 1fch_A 353 DARDLSTLLTMF 364 (368)
T ss_dssp HTTCHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999998877655
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.65 E-value=7.3e-15 Score=157.21 Aligned_cols=166 Identities=16% Similarity=0.177 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..++.+|..+..+|++++|+.+|++++++ +|....++..||.+|..+|++++|+..+.+++..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-------- 68 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-------- 68 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------
Confidence 456889999999999999999999999987 5666789999999999999999999999999876
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
.+....++..+|.++...++++.|+.++.+++.+ +|....++..+|.+|..+|++++|+.+|++++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~--- 137 (184)
T 3vtx_A 69 DTTSAEAYYILGSANFMIDEKQAAIDALQRAIAL--------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--- 137 (184)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc---
Confidence 3556778899999999999999999999999986 34456778899999999999999999999999873
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
+....+++++|.+|..+|++++|+.+|++|+++
T Consensus 138 -----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 138 -----PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -----chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 345678999999999999999999999999975
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.6e-15 Score=197.23 Aligned_cols=172 Identities=23% Similarity=0.291 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
..+..++.+|.++..+|++++|+.+|++|+++ +|..+.++.+||.+|..+|++++|+.+|++|+.+
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l------ 72 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI------ 72 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 45788999999999999999999999999988 5677889999999999999999999999999997
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000191 971 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
+|+...+|++||.+|..+|++++|+++|++|+++ +|..+.+++++|.+|..+|++++|+.+|++|+++.
T Consensus 73 --~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~- 141 (723)
T 4gyw_A 73 --SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK- 141 (723)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 5677889999999999999999999999999986 46667889999999999999999999999999873
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000191 1051 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 1094 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~ 1094 (1888)
+....++.+||.+|..+|++++|++.+++++++....
T Consensus 142 -------P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 142 -------PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp -------SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred -------CCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 3456789999999999999999999999999887554
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.6e-15 Score=173.41 Aligned_cols=182 Identities=14% Similarity=0.092 Sum_probs=153.8
Q ss_pred HcCChHHHHHHHHHHHHHHHH-hc--CCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 000191 905 DKGKLEDAVTYGTKALAKLVA-VC--GPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYG 981 (1888)
Q Consensus 905 ~qGd~dEAie~~eeAL~l~eq-i~--G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~ 981 (1888)
..|++++|..++++|...... .+ +.+....+..|...|.+|..+|++++|+.+|++|+.+..+. .+....+.+|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~ 80 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN--RSLFHAAKAFE 80 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHH
Confidence 457889999999999887653 23 34555566788888999999999999999999999998874 34556788999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 000191 982 DLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTA 1061 (1888)
Q Consensus 982 nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA 1061 (1888)
++|.+|..+|++++|+.+|++|+.++... .+....+.++.++|.+|.. |++++|+.+|++|+++.... .+....+
T Consensus 81 ~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~--~~~~~~~ 155 (307)
T 2ifu_A 81 QAGMMLKDLQRMPEAVQYIEKASVMYVEN--GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE--ERLRQAA 155 (307)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC--CChhHHH
Confidence 99999999999999999999999998653 2334567899999999999 99999999999999998764 2344567
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000191 1062 ASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 1093 (1888)
Q Consensus 1062 ~al~nLA~ay~~lGdydeAle~lqkALeI~kk 1093 (1888)
.++.++|.+|..+|+|++|+.+|++++.+...
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 187 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKE 187 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999988754
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.8e-15 Score=172.48 Aligned_cols=239 Identities=10% Similarity=0.017 Sum_probs=182.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhcCCCCh
Q 000191 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG-DFNQATIYQQKALDINERELGLDHP 974 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lG-dyeeAl~~~eKAL~I~Er~lG~Dhp 974 (1888)
++..+..++..|++++|+.++++++.. +|....++..+|.+|..+| ++++|+.++++++.+ .+
T Consensus 59 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--------~~ 122 (330)
T 3hym_B 59 LPVHIGTLVELNKANELFYLSHKLVDL--------YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL--------EK 122 (330)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT--------CT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CC
Confidence 344567778999999999999999986 3445678999999999999 999999999999875 34
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 000191 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G 1054 (1888)
....++..+|.+|...|++++|+.+|++++.+. |....++.++|.+|...|++++|+.+|++++++.
T Consensus 123 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----- 189 (330)
T 3hym_B 123 TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--------KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA----- 189 (330)
T ss_dssp TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-----
Confidence 556789999999999999999999999999863 2334557779999999999999999999998763
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCCc
Q 000191 1055 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDD-LRTQDAAAWLE--YFESKAFEQQEAARNGTRKPD 1131 (1888)
Q Consensus 1055 ~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh-~~tl~a~~~La--~L~qka~e~AeAl~~~~~~~~ 1131 (1888)
+....++..+|.+|...|++++|+.++++++.+.....+... +....+...++ +...+.++.+..........
T Consensus 190 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~- 265 (330)
T 3hym_B 190 ---PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL- 265 (330)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred ---CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh-
Confidence 234577889999999999999999999999988755433221 11112223333 33444445444333221110
Q ss_pred hhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000191 1132 ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1132 ~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
.+....++..+|.+|..+|++++|+.+|++++++..
T Consensus 266 -------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 266 -------IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp -------STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred -------CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 012245789999999999999999999999987653
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.63 E-value=8.5e-15 Score=178.90 Aligned_cols=241 Identities=10% Similarity=0.051 Sum_probs=189.4
Q ss_pred hcccHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHH
Q 000191 886 AACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD-FNQATIYQQKALDI 964 (1888)
Q Consensus 886 ~~~~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGd-yeeAl~~~eKAL~I 964 (1888)
+......+..++.+|.++...|++++|+.+|++++.+ +|....+|+++|.+|..+|+ +++|+.++++|+.+
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l 161 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE 161 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH
Confidence 3455667888899999999999999999999999987 67778899999999999997 99999999999997
Q ss_pred HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 000191 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHK 1044 (1888)
Q Consensus 965 ~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~Lek 1044 (1888)
+|....+|+++|.+|..+|++++|+.+|++|+.+ +|....+++++|.+|..+|++++|+.+|++
T Consensus 162 --------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~ 225 (382)
T 2h6f_A 162 --------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQ 225 (382)
T ss_dssp --------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred --------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5777889999999999999999999999999986 466678899999999999999999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHH-cCChHHH-----HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH--H
Q 000191 1045 ALKCNQRLLGPDHIQTAASYHAIAIALSL-MEAYPLS-----VQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESK--A 1116 (1888)
Q Consensus 1045 ALei~ek~~G~d~~~tA~al~nLA~ay~~-lGdydeA-----le~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qk--a 1116 (1888)
++++. +....+++++|.+|.. .|.+++| +.++++|+.+ .+++......+.++... .+ .
T Consensus 226 al~l~--------P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l-----~P~~~~a~~~l~~ll~~-~g~~~ 291 (382)
T 2h6f_A 226 LLKED--------VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL-----VPHNESAWNYLKGILQD-RGLSK 291 (382)
T ss_dssp HHHHC--------TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHTT-TCGGG
T ss_pred HHHhC--------CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHc-cCccc
Confidence 99873 4456789999999999 5555888 4888888864 57776544443333221 11 1
Q ss_pred HHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcC--------C-hHHHHHHHHHH-HHHh
Q 000191 1117 FEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKG--------R-NVSTLKRKTYV-AKVK 1173 (1888)
Q Consensus 1117 ~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qG--------d-yeEAleyyeKA-LeL~ 1173 (1888)
.+.+....... ...+....++..+|.+|..+| + +++|+.+|+++ +++.
T Consensus 292 ~~~a~~~~~~~---------~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 292 YPNLLNQLLDL---------QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD 349 (382)
T ss_dssp CHHHHHHHHHH---------TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHh---------ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC
Confidence 22222221111 112233567889999998874 3 58899999988 5543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.7e-14 Score=169.24 Aligned_cols=213 Identities=15% Similarity=0.117 Sum_probs=175.1
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000191 889 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 968 (1888)
Q Consensus 889 ~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~ 968 (1888)
....+..++.+|.++...|++++|+.++++|+.++... +...+..+.++.+||.+|..+|++++|+.++++|+.+.++.
T Consensus 139 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 217 (383)
T 3ulq_A 139 RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH-EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE 217 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc
Confidence 44568889999999999999999999999999998775 33367788999999999999999999999999999998874
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000191 969 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 969 lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
.+.+..+.++.+||.+|..+|++++|+.+|++|+.+..... +.+..+.++.++|.+|..+|++++|+.++++|+++
T Consensus 218 --~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 293 (383)
T 3ulq_A 218 --KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN--ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY 293 (383)
T ss_dssp --TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45677789999999999999999999999999999987642 22777899999999999999999999999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 000191 1049 NQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESK 1115 (1888)
Q Consensus 1049 ~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qk 1115 (1888)
..... .+.....+..+|.+|...|++ ..+++|+.++++. ...+....+...|+.+...
T Consensus 294 ~~~~~---~~~~~~~~~~l~~~~~~~~~~----~~~~~al~~~~~~--~~~~~~~~~~~~la~~y~~ 351 (383)
T 3ulq_A 294 SQKAG---DVIYLSEFEFLKSLYLSGPDE----EAIQGFFDFLESK--MLYADLEDFAIDVAKYYHE 351 (383)
T ss_dssp HHHHT---CHHHHHHHHHHHHHHTSSCCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHH
T ss_pred HHHcC---CHHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHC--cCHHHHHHHHHHHHHHHHH
Confidence 87752 233333467799999999996 4566667666655 3444555555556544443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.7e-15 Score=168.41 Aligned_cols=243 Identities=12% Similarity=0.096 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 973 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh 973 (1888)
..++.+|..++..|++++|+.+|++++.. +|....++..++.+++.+|++++|+.++++++.. +
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~ 86 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEK--------DPFHASCLPVHIGTLVELNKANELFYLSHKLVDL--------Y 86 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--------C
Confidence 44667788999999999999999999876 3344457788899999999999999999999986 3
Q ss_pred hhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 974 PDTMKSYGDLAVFYYRLQ-HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~lG-dyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
|....++..+|.+|...| ++++|+.+|++++.+ .|....++.++|.+|...|++++|+.+|++++++.
T Consensus 87 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--- 155 (330)
T 3hym_B 87 PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL--------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--- 155 (330)
T ss_dssp TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT--------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---
T ss_pred cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---
Confidence 555678999999999999 999999999999874 24445678899999999999999999999999874
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDA 1132 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~ 1132 (1888)
++ ....+..+|.+|...|++++|+.++++++.+ .+++......+..+ +...+.++.+............
T Consensus 156 --~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~a~~~~~ 224 (330)
T 3hym_B 156 --KG---CHLPMLYIGLEYGLTNNSKLAERFFSQALSI-----APEDPFVMHEVGVV-AFQNGEWKTAEKWFLDALEKIK 224 (330)
T ss_dssp --TT---CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHT
T ss_pred --cc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-----CCCChHHHHHHHHH-HHHcccHHHHHHHHHHHHHHhh
Confidence 22 2345677999999999999999999999854 45665444333332 3333444444333221110000
Q ss_pred hhh-hcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000191 1133 SIA-SKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1133 ~~a-s~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
... ....+....++..+|.+|..+|++++|+.+|++++++..
T Consensus 225 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 267 (330)
T 3hym_B 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP 267 (330)
T ss_dssp TTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc
Confidence 000 001123346889999999999999999999999998854
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-14 Score=171.38 Aligned_cols=274 Identities=9% Similarity=-0.048 Sum_probs=198.6
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+..++.+|..+...|++++|+.++++++.+.... .+....+.++.++|.+|..+|++++|+.++++++.+.++..+.
T Consensus 52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~ 129 (373)
T 1hz4_A 52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE 129 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc
Confidence 45567888999999999999999999999987764 2334456788999999999999999999999999999886655
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
+++....++.++|.+|..+|++++|+.++++++.+.... + ++..+.++.++|.++...|++++|+.++++++.+...
T Consensus 130 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~--~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 206 (373)
T 1hz4_A 130 QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY-Q--PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN 206 (373)
T ss_dssp TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS-C--GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc-C--cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 567788899999999999999999999999999886542 2 2345678899999999999999999999999988644
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCC
Q 000191 1052 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE--YFESKAFEQQEAARNGTRK 1129 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La--~L~qka~e~AeAl~~~~~~ 1129 (1888)
. +......+.....++.++...|++++|..++++++.+. .+..+... .....++ ++..+..+.+.........
T Consensus 207 ~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 207 G-KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE---FANNHFLQ-GQWRNIARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp S-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC---CTTCGGGH-HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred c-CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCC---CCcchhhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 11111222223345667889999999999998887532 11111111 1122222 2333334433322221110
Q ss_pred CchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1130 PDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1130 ~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
............+++..++.+|..+|++++|..+|++++.+....+
T Consensus 282 --~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g 327 (373)
T 1hz4_A 282 --NARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG 327 (373)
T ss_dssp --HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC
T ss_pred --HHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccc
Confidence 0001111123456888999999999999999999999999987643
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.3e-14 Score=162.55 Aligned_cols=244 Identities=17% Similarity=0.090 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
++..++.+|..++..|++++|+.+|++++.. .|....++..+|.+|..+|++++|+.++++++.+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------- 66 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL------- 66 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Confidence 3567889999999999999999999999986 3455679999999999999999999999999987
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH------------HHHHHHCCCHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINV------------AMMEEGLGNVHVAL 1039 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NL------------A~iy~~lG~yeeAl 1039 (1888)
.|....++..+|.+|...|++++|+.+|++++.+ .+.......++..+ |.++...|++++|+
T Consensus 67 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 140 (359)
T 3ieg_A 67 -KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS-----NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAI 140 (359)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 3555688999999999999999999999999874 22000333444444 89999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 000191 1040 RYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQ 1119 (1888)
Q Consensus 1040 e~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~ 1119 (1888)
.+|+++++.. + ....++..+|.+|...|++++|+.++++++.+ .+++......+..+ +...+..+.
T Consensus 141 ~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~-~~~~~~~~~ 206 (359)
T 3ieg_A 141 TFLDKILEVC-----V---WDAELRELRAECFIKEGEPRKAISDLKAASKL-----KSDNTEAFYKISTL-YYQLGDHEL 206 (359)
T ss_dssp HHHHHHHHHC-----T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CSCCHHHHHHHHHH-HHHHTCHHH
T ss_pred HHHHHHHHhC-----C---CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH-HHHcCCHHH
Confidence 9999999873 2 23467889999999999999999999999854 56666544333322 334444444
Q ss_pred HHHHHhcCCCCchhhhhcCCccHH---------HHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000191 1120 QEAARNGTRKPDASIASKGHLSVS---------DLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1120 AeAl~~~~~~~~~~~as~~~~sva---------elL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
+......... ..+...... .....+|.++...|++++|+.+|++++++...
T Consensus 207 A~~~~~~a~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 266 (359)
T 3ieg_A 207 SLSEVRECLK-----LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS 266 (359)
T ss_dssp HHHHHHHHHH-----HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHh-----hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 4433322110 011111111 12335588899999999999999999987643
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.5e-14 Score=171.85 Aligned_cols=201 Identities=11% Similarity=0.018 Sum_probs=168.2
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000191 889 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 968 (1888)
Q Consensus 889 ~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~ 968 (1888)
....+..++.+|.++...|++++|+.++++|+.++... +...+..+.++.+||.+|..+|++++|+.++++|+.+.++.
T Consensus 137 ~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 215 (378)
T 3q15_A 137 DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH-PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI 215 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC-CCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Confidence 35568889999999999999999999999999998764 22244678999999999999999999999999999998774
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000191 969 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 969 lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
.+....+.++.+||.+|..+|++++|+.+|++|+.+.... .+|..+.++.++|.+|..+|++++|+.++++|+++
T Consensus 216 --~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 216 --QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK---VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3445677899999999999999999999999999998765 35667899999999999999999999999999997
Q ss_pred HHHhc------------------CC---------------CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 000191 1049 NQRLL------------------GP---------------DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL 1095 (1888)
Q Consensus 1049 ~ek~~------------------G~---------------d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~L 1095 (1888)
..... +. ..+....++..+|.+|...|++++|+.++++++++.++..
T Consensus 291 ~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~ 370 (378)
T 3q15_A 291 ITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDIL 370 (378)
T ss_dssp CCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 53321 11 2234455667788888888888888888888888776654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-14 Score=167.67 Aligned_cols=194 Identities=12% Similarity=0.032 Sum_probs=161.8
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChh---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRM---TAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 967 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe---~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er 967 (1888)
.....+.+.+..++..|++++|+.++++++... ...+. .+..+..+|.+|...|++++|+.++++|+.+...
T Consensus 73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~ 147 (293)
T 3u3w_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-----EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT 147 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc-----cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc
Confidence 335556667788999999999999999998742 22232 2456667999999999999999999999986432
Q ss_pred hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 000191 968 ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 1047 (1888)
Q Consensus 968 ~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALe 1047 (1888)
..+....+.++++||.+|..+|++++|+.+|++|+.++... ..+++..+.+++|+|.+|..+|+|++|+.++++|++
T Consensus 148 --~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 148 --GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp --CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 23334456789999999999999999999999999988774 336778888999999999999999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHHh
Q 000191 1048 CNQRLLGPDHIQTAASYHAIAIALSLMEA-YPLSVQHEQTTLQILRAK 1094 (1888)
Q Consensus 1048 i~ek~~G~d~~~tA~al~nLA~ay~~lGd-ydeAle~lqkALeI~kk~ 1094 (1888)
+.... .+....+.+++++|.+|..+|+ +++|+.++++|+.+++..
T Consensus 225 ~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~ 270 (293)
T 3u3w_A 225 ISCRI--NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHHHT--TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHc--CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 98775 3455678999999999999995 699999999999998754
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.62 E-value=4.3e-14 Score=174.92 Aligned_cols=246 Identities=13% Similarity=0.059 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
..+..++.+|..+...|++++|+.+|++++.+ .|. ..++..+|.+|..+|++++|+.++++++.+
T Consensus 241 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------ 305 (537)
T 3fp2_A 241 NAALALCYTGIFHFLKNNLLDAQVLLQESINL--------HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDL------ 305 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhcc------
Confidence 34677889999999999999999999999987 344 678999999999999999999999999986
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000191 971 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
.+....++.++|.+|...|++++|+.+|++++.+ . |....++.++|.+|..+|++++|+.+|+++++..
T Consensus 306 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~- 374 (537)
T 3fp2_A 306 --NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL-----N---PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF- 374 (537)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C---TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3556778999999999999999999999999985 2 3334678899999999999999999999999873
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH----------HHHHHH
Q 000191 1051 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES----------KAFEQQ 1120 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~q----------ka~e~A 1120 (1888)
++ ...++..+|.+|...|++++|+.++++++.+....................+... +.++.+
T Consensus 375 ----~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A 447 (537)
T 3fp2_A 375 ----PT---LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAA 447 (537)
T ss_dssp ----TT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHH
T ss_pred ----CC---ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHH
Confidence 22 3457888999999999999999999999988755432221111111111122233 444444
Q ss_pred HHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1121 EAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1121 eAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
.......... .+....++..+|.+|..+|++++|+.+|++++++.....
T Consensus 448 ~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 448 IKLLTKACEL--------DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMD 496 (537)
T ss_dssp HHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CH
T ss_pred HHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 4433321110 112346789999999999999999999999999876643
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.62 E-value=6.1e-14 Score=156.54 Aligned_cols=205 Identities=18% Similarity=0.100 Sum_probs=174.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..++.+|..++..|++++|+.+|++++.. .+....++..+|.+|...|++++|+.++++++.+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-------- 100 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI--------DPSSADAHAALAVVFQTEMEPKLADEEYRKALAS-------- 100 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------
Confidence 778899999999999999999999999987 3445678999999999999999999999999986
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
.+....++.++|.+|...|++++|+.+|++++. .+.+|....++.++|.+|...|++++|+.+|+++++..
T Consensus 101 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--- 171 (252)
T 2ho1_A 101 DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ------DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--- 171 (252)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh------CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Confidence 344577899999999999999999999999986 23467778899999999999999999999999999863
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDA 1132 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~ 1132 (1888)
+. ...++..+|.+|..+|++++|+.++++++.+ .+++
T Consensus 172 --~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~--------------------------------- 208 (252)
T 2ho1_A 172 --RN---QPSVALEMADLLYKEREYVPARQYYDLFAQG-----GGQN--------------------------------- 208 (252)
T ss_dssp --SC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----SCCC---------------------------------
T ss_pred --cc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcCc---------------------------------
Confidence 22 3567889999999999999999998877632 1211
Q ss_pred hhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000191 1133 SIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1133 ~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
...+..++.+|...|++++|..++++++++...
T Consensus 209 ----------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 209 ----------ARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp ----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 124667788888999999999999999887543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.7e-14 Score=162.32 Aligned_cols=240 Identities=15% Similarity=0.086 Sum_probs=180.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...++.+|..++..|++++|+.+|++++.+ .|....++..+|.+|..+|++++|+.++++++.+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------- 100 (359)
T 3ieg_A 37 YIAYYRRATVFLAMGKSKAALPDLTKVIAL--------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS-------- 100 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--------
Confidence 457788899999999999999999999987 3455578999999999999999999999999875
Q ss_pred Ch---hhHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHH
Q 000191 973 HP---DTMKSYGDL------------AVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHV 1037 (1888)
Q Consensus 973 hp---~ta~ay~nL------------A~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yee 1037 (1888)
.+ ....++..+ |.++...|++++|+.++++++.. .|....++.++|.+|..+|++++
T Consensus 101 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 172 (359)
T 3ieg_A 101 NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--------CVWDAELRELRAECFIKEGEPRK 172 (359)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHCCCHHH
Confidence 23 334444444 89999999999999999999975 23445778999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH--------
Q 000191 1038 ALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL-------- 1109 (1888)
Q Consensus 1038 Ale~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~L-------- 1109 (1888)
|+.+|+++++.. + ....++..+|.+|...|++++|+.++++++++ .+++.........+
T Consensus 173 A~~~~~~~~~~~-----~---~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~ 239 (359)
T 3ieg_A 173 AISDLKAASKLK-----S---DNTEAFYKISTLYYQLGDHELSLSEVRECLKL-----DQDHKRCFAHYKQVKKLNKLIE 239 (359)
T ss_dssp HHHHHHHHHTTC-----S---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CccchHHHHHHHHHHHHHHHHH
Confidence 999999998752 2 34467889999999999999999999999865 46665544332221
Q ss_pred -H--HHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 000191 1110 -E--YFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 1173 (1888)
Q Consensus 1110 -a--~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~ 1173 (1888)
+ ++..+.++.+......... ....+......++..+|.+|..+|++++|+.+|++++++.
T Consensus 240 ~a~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 302 (359)
T 3ieg_A 240 SAEELIRDGRYTDATSKYESVMK----TEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME 302 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH----HCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh----cCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 1 2333334433332221110 0011111234567778888888999999999998888873
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.6e-14 Score=160.30 Aligned_cols=202 Identities=19% Similarity=0.168 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+..++.+|..++..|++++|+.+|++++.. .+.++....+++.+|.+|+.+|++++|+.+|++++.+ .+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-----~p 83 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTY-----GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI-----YQ 83 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG-----CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CT
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH-----CC
Confidence 3678899999999999999999999999876 2456666889999999999999999999999999987 35
Q ss_pred CChhhHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH--------------HHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYR--------LQHTELALKYVKRALYLLHLTCGPSHPNTAATY--------------INVAMME 1029 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~--------lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~--------------~NLA~iy 1029 (1888)
+++....+++++|.+|.. +|++++|+.+|++++.. .++++....++ .++|.+|
T Consensus 84 ~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 158 (261)
T 3qky_A 84 IDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR-----YPNHELVDDATQKIRELRAKLARKQYEAARLY 158 (261)
T ss_dssp TCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH-----CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH-----CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788999999999999 99999999999999986 35555555555 8899999
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHHHHHhcCCCC
Q 000191 1030 EGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLM----------EAYPLSVQHEQTTLQILRAKLGPDD 1099 (1888)
Q Consensus 1030 ~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~l----------GdydeAle~lqkALeI~kk~LG~dh 1099 (1888)
..+|++++|+.+|+++++.. +++.....+++.+|.+|..+ |++++|+.+|+++++. .+++
T Consensus 159 ~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~ 228 (261)
T 3qky_A 159 ERRELYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI-----FPDS 228 (261)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH-----CTTC
T ss_pred HHccCHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH-----CCCC
Confidence 99999999999999999874 55666788999999999977 8999999999998865 4778
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000191 1100 LRTQDAAAWLEYFESKAFE 1118 (1888)
Q Consensus 1100 ~~tl~a~~~La~L~qka~e 1118 (1888)
+....+...+..+......
T Consensus 229 ~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 229 PLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp THHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 7777777777766554443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-14 Score=160.77 Aligned_cols=205 Identities=15% Similarity=0.146 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
..+..++.+|..++..|++++|+.+|++++.. .+....++..+|.+|..+|++++|+.++++++.+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------ 86 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--------NKEDAIPYINFANLLSSVNELERALAFYDKALEL------ 86 (243)
T ss_dssp ---------------------CCTTHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------
Confidence 34677888999999999999999999999874 4455778999999999999999999999999987
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000191 971 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
.+....++..+|.+|..+|++++|+.+|++++.+. |....++.++|.+|..+|++++|+.+|+++++..
T Consensus 87 --~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~- 155 (243)
T 2q7f_A 87 --DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG--------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN- 155 (243)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred --CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-
Confidence 34567889999999999999999999999999862 2335678899999999999999999999999873
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 1051 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKP 1130 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~ 1130 (1888)
+ ....++..+|.+|...|++++|+.++++++.. .+++
T Consensus 156 ----~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~------------------------------- 192 (243)
T 2q7f_A 156 ----E---NDTEARFQFGMCLANEGMLDEALSQFAAVTEQ-----DPGH------------------------------- 192 (243)
T ss_dssp ----T---TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-----CTTC-------------------------------
T ss_pred ----C---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----Cccc-------------------------------
Confidence 2 23457889999999999999999999888753 1111
Q ss_pred chhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000191 1131 DASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1131 ~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
..++..+|.+|..+|++++|+.+|++++++...
T Consensus 193 ------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 193 ------------ADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp ------------HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred ------------HHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 235788999999999999999999999987644
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.61 E-value=9.5e-15 Score=172.79 Aligned_cols=256 Identities=10% Similarity=-0.044 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..++.+|..+...|++++|+.+|++++.+ +|....++..||.+|..+|++++|+.++++++.+........
T Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 170 (365)
T 4eqf_A 99 AEAWQFLGITQAENENEQAAIVALQRCLEL--------QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLV 170 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHH
Confidence 556888999999999999999999999987 455578999999999999999999999999999754422111
Q ss_pred Ch--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000191 973 HP--DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 973 hp--~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
.. .....+..+|.+|...|++++|+.+|++++.+ .++.. ...++.++|.+|..+|++++|+.+|++++++.
T Consensus 171 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 243 (365)
T 4eqf_A 171 KNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ-----NGDMI-DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR- 243 (365)
T ss_dssp ------------------CCHHHHHHHHHHHHHHHH-----SCSSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred hhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-----CcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 10 12345567899999999999999999999986 22211 35678999999999999999999999999873
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 1051 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKP 1130 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~ 1130 (1888)
+....++.++|.+|...|++++|+.++++++++ .+++......+..+ +...+.++.+..........
T Consensus 244 -------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 244 -------PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI-----QPGFIRSRYNLGIS-CINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp -------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHH-HHHHTCCHHHHHHHHHHHHH
T ss_pred -------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCchHHHHHHHHH-HHHCCCHHHHHHHHHHHHHh
Confidence 234568899999999999999999999999976 45555443333222 33334444443332211111
Q ss_pred chhhhh----cCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhccc
Q 000191 1131 DASIAS----KGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 1176 (1888)
Q Consensus 1131 ~~~~as----~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi 1176 (1888)
...... ........++..++.++...|+.+.|....++.+......
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~~~~~ 360 (365)
T 4eqf_A 311 QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRA 360 (365)
T ss_dssp HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGGGTTT
T ss_pred CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHHHHHh
Confidence 100000 0111235689999999999999999998888766655443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=5e-14 Score=164.14 Aligned_cols=192 Identities=10% Similarity=-0.077 Sum_probs=157.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 973 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh 973 (1888)
..+...|..|...|++++|+.+|++|+.+..+. .+....+.+|.++|.+|..+|++++|+.+|++|+.+..+. .+.
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~ 113 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQF 113 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--CCH
Confidence 344455678889999999999999999998765 3445668899999999999999999999999999998763 234
Q ss_pred hhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 974 PDTMKSYGDLAVFYYRL-QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~l-GdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
...+.++.+||.+|..+ |++++|+.+|++|+.+.... .+......++.++|.+|..+|+|++|+.+|++++++....
T Consensus 114 ~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 191 (292)
T 1qqe_A 114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence 45678999999999996 99999999999999997652 1223446789999999999999999999999999875322
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 1092 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~k 1092 (1888)
+........++.++|.+|..+|++++|+.++++++++..
T Consensus 192 -~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 230 (292)
T 1qqe_A 192 -RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (292)
T ss_dssp -TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred -CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 111123456889999999999999999999999987643
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.9e-14 Score=174.34 Aligned_cols=246 Identities=15% Similarity=0.091 Sum_probs=179.0
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC-CChhhHHHHHHHHH
Q 000191 907 GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL-DHPDTMKSYGDLAV 985 (1888)
Q Consensus 907 Gd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~-Dhp~ta~ay~nLA~ 985 (1888)
++.+.++..+++.+...... .++...+.+|++||.+|+.+|++++|+.+|++|+.+.+...+. .++..+.+|.|||.
T Consensus 25 ~~~~~~l~~~e~~~~~~~~~--~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~ 102 (472)
T 4g1t_A 25 MEGENSLDDFEDKVFYRTEF--QNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAW 102 (472)
T ss_dssp TTTCCCHHHHHHHHHHHTTS--CC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh--CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHH
Confidence 44555666666666554333 2344557889999999999999999999999999998876543 36788899999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 000191 986 FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL--GNVHVALRYLHKALKCNQRLLGPDHIQTAAS 1063 (1888)
Q Consensus 986 ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~l--G~yeeAle~LekALei~ek~~G~d~~~tA~a 1063 (1888)
+|..+|++++|+.+|++++.+.....+..++..+.++.++|+++... ++|++|+.+|++|+++. ++++. +
T Consensus 103 ~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-----p~~~~---~ 174 (472)
T 4g1t_A 103 VYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-----PKNPE---F 174 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-----TTCHH---H
T ss_pred HHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-----CCCHH---H
Confidence 99999999999999999999999988888888888999999887764 57999999999999874 45544 4
Q ss_pred HHHHHHH---HHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHH--HHHHHHHHHHHHhcCCCCchhhhhc
Q 000191 1064 YHAIAIA---LSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL-EYF--ESKAFEQQEAARNGTRKPDASIASK 1137 (1888)
Q Consensus 1064 l~nLA~a---y~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~L-a~L--~qka~e~AeAl~~~~~~~~~~~as~ 1137 (1888)
+..+|.+ +...+++++|++.+++|+++ .+++......+... ..+ ..+..+.+....... ..
T Consensus 175 ~~~~~~~~~~l~~~~~~~~al~~~~~al~l-----~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~a--------l~ 241 (472)
T 4g1t_A 175 TSGLAIASYRLDNWPPSQNAIDPLRQAIRL-----NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEA--------LE 241 (472)
T ss_dssp HHHHHHHHHHHHHSCCCCCTHHHHHHHHHH-----CSSCHHHHHHHHHHHHHCC------CHHHHHHHHH--------HH
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhhc-----CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--------HH
Confidence 4455555 44568889999999999865 56665543332211 111 112222232222211 11
Q ss_pred CCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000191 1138 GHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1138 ~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
..+....++..+|.+|..+|++++|+.+|++++++...
T Consensus 242 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 279 (472)
T 4g1t_A 242 KAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN 279 (472)
T ss_dssp HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC
Confidence 12244567899999999999999999999999987654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.4e-14 Score=165.07 Aligned_cols=195 Identities=12% Similarity=0.023 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
....+...+..++..|++++|+.++.+++...... ......+..+..+|.+|..+|++++|+.++++|+.+... ..
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~~ 149 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH--PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT--GI 149 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC--HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCC--SS
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC--hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc--CC
Confidence 35667788899999999999999999998863210 112234566788999999999999999999999987543 23
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT-AATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~-a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
+....+.+|+++|.+|..+|++++|+.+|++|+.+..... +.+.. +.+++|+|.+|..+|+|++|+.+|++|+++..
T Consensus 150 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~--~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH--DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC--ccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3444578999999999999999999999999999887642 23333 37899999999999999999999999999985
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHHHh
Q 000191 1051 RLLGPDHIQTAASYHAIAIALSLMEAYPLS-VQHEQTTLQILRAK 1094 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~ay~~lGdydeA-le~lqkALeI~kk~ 1094 (1888)
.. .+....+.+++++|.+|..+|++++| ..++++|+.+++..
T Consensus 228 ~~--~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~ 270 (293)
T 2qfc_A 228 RI--NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HT--TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred hc--CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 43 34455788999999999999999999 88899999998654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.7e-14 Score=164.84 Aligned_cols=185 Identities=10% Similarity=-0.015 Sum_probs=158.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000191 895 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 974 (1888)
Q Consensus 895 ~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp 974 (1888)
.+...|..|..+|++++|+.+|.+++.+..+. .+....+.+|.++|.+|..+|++++|+.+|++|+.++.+. .+..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~ 113 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN--RSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN--GTPD 113 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT--TCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCHH
Confidence 34444688899999999999999999998775 3455678899999999999999999999999999998763 2334
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 000191 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G 1054 (1888)
..+.++.+||.+|.. |++++|+.+|++|+.+.... .+....+.++.++|.+|..+|+|++|+.+|++++++....
T Consensus 114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-- 188 (307)
T 2ifu_A 114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE--ERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM-- 188 (307)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC--CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--
Confidence 567899999999999 99999999999999998763 2234557889999999999999999999999999998765
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000191 1055 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 1088 (1888)
Q Consensus 1055 ~d~~~tA~al~nLA~ay~~lGdydeAle~lqkAL 1088 (1888)
......+.++.++|.+|..+|++++|+.++++++
T Consensus 189 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 189 ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 2244566788999999999999999999999988
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=6.8e-14 Score=163.05 Aligned_cols=227 Identities=10% Similarity=-0.005 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 936 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 1015 (1888)
Q Consensus 936 ~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dh 1015 (1888)
.+|...|.+|..+|++++|+.+|++|+.+..+. .+....+.+|.++|.+|..+|++++|+.+|++|+.+.... .+.
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~ 113 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQF 113 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--CCH
Confidence 344445778889999999999999999998774 2445678999999999999999999999999999998763 233
Q ss_pred hhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000191 1016 PNTAATYINVAMMEEGL-GNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 1094 (1888)
Q Consensus 1016 P~~a~a~~NLA~iy~~l-G~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~ 1094 (1888)
...+.++.++|.+|... |++++|+.+|++|+++.... .+....+.++.++|.+|..+|+|++|+.+|++++.+....
T Consensus 114 ~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 191 (292)
T 1qqe_A 114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence 45678899999999996 99999999999999998653 2233456789999999999999999999999999764211
Q ss_pred cCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHH--HcCChHHHHHHHHHHH
Q 000191 1095 LGPDDLRTQDAAAWLE--YFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHD--TKGRNVSTLKRKTYVA 1170 (1888)
Q Consensus 1095 LG~dh~~tl~a~~~La--~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~--~qGdyeEAleyyeKAL 1170 (1888)
+........++..++ ++..+.++.+...........+.... ......+..++..|. ..+++++|+..|++++
T Consensus 192 -~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~---~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 192 -RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD---SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp -TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred -CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC---cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 000011222333333 44455666666555544333322111 112334556666664 4677888888886665
Q ss_pred HH
Q 000191 1171 KV 1172 (1888)
Q Consensus 1171 eL 1172 (1888)
.+
T Consensus 268 ~l 269 (292)
T 1qqe_A 268 RL 269 (292)
T ss_dssp CC
T ss_pred cc
Confidence 44
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.2e-14 Score=188.36 Aligned_cols=176 Identities=19% Similarity=0.182 Sum_probs=155.5
Q ss_pred CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000191 930 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 1009 (1888)
Q Consensus 930 dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~k 1009 (1888)
.+|..+.+|++||.+|..+|++++|+.+|++|+++ +|+...+|++||.+|..+|++++|+.+|++|+++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--- 72 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--- 72 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 36788899999999999999999999999999997 5777899999999999999999999999999986
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000191 1010 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1010 i~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALe 1089 (1888)
+|+.+.+++++|.+|..+|++++|+.+|++|+++. +..+.++++||.+|..+|++++|+.+|++|++
T Consensus 73 -----~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~--------P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 73 -----SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN--------PAFADAHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46667889999999999999999999999999873 44577899999999999999999999999985
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000191 1090 ILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYV 1169 (1888)
Q Consensus 1090 I~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKA 1169 (1888)
+ .+++ .+++.++|.+|..+|++++|.++|+++
T Consensus 140 l-----~P~~-------------------------------------------~~a~~~L~~~l~~~g~~~~A~~~~~ka 171 (723)
T 4gyw_A 140 L-----KPDF-------------------------------------------PDAYCNLAHCLQIVCDWTDYDERMKKL 171 (723)
T ss_dssp H-----CSCC-------------------------------------------HHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred h-----CCCC-------------------------------------------hHHHhhhhhHHHhcccHHHHHHHHHHH
Confidence 4 2332 235778899999999999999999999
Q ss_pred HHHhcccc
Q 000191 1170 AKVKGNFY 1177 (1888)
Q Consensus 1170 LeL~dSi~ 1177 (1888)
+++.....
T Consensus 172 l~l~~~~~ 179 (723)
T 4gyw_A 172 VSIVADQL 179 (723)
T ss_dssp HHHHHHHH
T ss_pred HHhChhHH
Confidence 99876643
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-13 Score=147.93 Aligned_cols=179 Identities=16% Similarity=0.102 Sum_probs=149.5
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 000191 903 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGD 982 (1888)
Q Consensus 903 ~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~n 982 (1888)
++..|++++|+.+++... .+....+.++..+|.+|..+|++++|+.++++++.++++. .+.+....++.+
T Consensus 2 ~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~ 71 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALL--------AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS--GDHTAEHRALHQ 71 (203)
T ss_dssp -----CHHHHHHHHHHHH--------TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhc--------CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHH
Confidence 356899999998554331 1334668899999999999999999999999999998763 356778899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 000191 983 LAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAA 1062 (1888)
Q Consensus 983 LA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~ 1062 (1888)
+|.+|..+|++++|+.++++++.+.... +.++...+.++.++|.+|..+|++++|+.++++++++.... .+....+.
T Consensus 72 l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~ 148 (203)
T 3gw4_A 72 VGMVERMAGNWDAARRCFLEERELLASL-PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA--DDQVAIAC 148 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--cchHHHHH
Confidence 9999999999999999999999998753 33334778899999999999999999999999999997664 34455678
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000191 1063 SYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 1094 (1888)
Q Consensus 1063 al~nLA~ay~~lGdydeAle~lqkALeI~kk~ 1094 (1888)
++.++|.+|..+|++++|+.++++++++++..
T Consensus 149 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 180 (203)
T 3gw4_A 149 AFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL 180 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence 88999999999999999999999999998764
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.7e-13 Score=147.12 Aligned_cols=205 Identities=14% Similarity=0.088 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
..+..++.+|..++..|++++|+.++++++.. .+....++..+|.+|..+|++++|+.++++++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------ 71 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKS--------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI------ 71 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh------
Confidence 45677888999999999999999999999986 3444678999999999999999999999999986
Q ss_pred CCChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 971 LDHPDTMKSYGDLAVFYYRL-QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~l-GdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
.+....++.++|.+|... |++++|+.++++++. .+.+|....++.++|.+|...|++++|+.+|+++++..
T Consensus 72 --~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 143 (225)
T 2vq2_A 72 --KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA------DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ 143 (225)
T ss_dssp --CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT------STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred --CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 344567889999999999 999999999999986 23457778889999999999999999999999998863
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000191 1050 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP-DDLRTQDAAAWLEYFESKAFEQQEAARNGTR 1128 (1888)
Q Consensus 1050 ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~-dh~~tl~a~~~La~L~qka~e~AeAl~~~~~ 1128 (1888)
+. ...++..+|.+|...|++++|+.++++++.+. + ++..
T Consensus 144 -----~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~--------------------------- 183 (225)
T 2vq2_A 144 -----PQ---FPPAFKELARTKMLAGQLGDADYYFKKYQSRV-----EVLQAD--------------------------- 183 (225)
T ss_dssp -----TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----CSCCHH---------------------------
T ss_pred -----CC---CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCCHH---------------------------
Confidence 22 34678899999999999999999999887542 2 2221
Q ss_pred CCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 000191 1129 KPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 1173 (1888)
Q Consensus 1129 ~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~ 1173 (1888)
.+..++.++...|++++|..+++.++++.
T Consensus 184 ----------------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 184 ----------------DLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp ----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ----------------HHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 23445556677888888888888777654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.58 E-value=8e-14 Score=149.14 Aligned_cols=170 Identities=18% Similarity=0.201 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 1013 (1888)
Q Consensus 934 ~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~ 1013 (1888)
.+.+|.+||.+|..+|++++|+.+|++|+.+ +|....++.+||.+|..+|++++|+.++.+++..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~------- 68 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL------- 68 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------
Confidence 4578999999999999999999999999987 5667889999999999999999999999999875
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000191 1014 SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 1093 (1888)
Q Consensus 1014 dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk 1093 (1888)
.|....++.++|.++...++++.|+.++.+++.+. +....++..+|.+|..+|++++|+.+|++++++
T Consensus 69 -~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~--------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--- 136 (184)
T 3vtx_A 69 -DTTSAEAYYILGSANFMIDEKQAAIDALQRAIALN--------TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--- 136 (184)
T ss_dssp -CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred -CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh---
Confidence 24446678889999999999999999999999873 233467888999999999999999999988754
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 000191 1094 KLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 1173 (1888)
Q Consensus 1094 ~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~ 1173 (1888)
.+++ ..++..+|.+|..+|++++|+.+|++|+++.
T Consensus 137 --~p~~-------------------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 137 --KPGF-------------------------------------------IRAYQSIGLAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp --CTTC-------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred --cchh-------------------------------------------hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 1221 2357889999999999999999999999986
Q ss_pred cc
Q 000191 1174 GN 1175 (1888)
Q Consensus 1174 dS 1175 (1888)
..
T Consensus 172 p~ 173 (184)
T 3vtx_A 172 EK 173 (184)
T ss_dssp HH
T ss_pred cc
Confidence 54
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-13 Score=156.73 Aligned_cols=224 Identities=15% Similarity=0.146 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHH
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH----TGDFNQATIYQQKALDINER 967 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~----lGdyeeAl~~~eKAL~I~Er 967 (1888)
.+..++.+|..++..|++++|+.+|++++.. ....++.+||.+|.. .+++++|+.+|++|+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--- 71 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--- 71 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC---
Confidence 3567889999999999999999999999872 223688999999999 99999999999999875
Q ss_pred hcCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCHHHHH
Q 000191 968 ELGLDHPDTMKSYGDLAVFYYR----LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGNVHVAL 1039 (1888)
Q Consensus 968 ~lG~Dhp~ta~ay~nLA~ly~~----lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~----lG~yeeAl 1039 (1888)
+ ...++.+||.+|.. .+++++|+.+|++|+.. + ...++.++|.+|.. .+++++|+
T Consensus 72 --~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~~~~~~~~~~~~~~A~ 134 (273)
T 1ouv_A 72 --N-----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-------K---YAEGCASLGGIYHDGKVVTRDFKKAV 134 (273)
T ss_dssp --T-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred --C-----CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-------C---CccHHHHHHHHHHcCCCcccCHHHHH
Confidence 1 46789999999999 99999999999999874 1 24678999999999 99999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--
Q 000191 1040 RYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL----MEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFE-- 1113 (1888)
Q Consensus 1040 e~LekALei~ek~~G~d~~~tA~al~nLA~ay~~----lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~-- 1113 (1888)
.+|++|++.. ...+++++|.+|.. .+++++|+.+++++++. ++. .+...++.+.
T Consensus 135 ~~~~~a~~~~----------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~~---~a~~~lg~~~~~ 194 (273)
T 1ouv_A 135 EYFTKACDLN----------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-------KDS---PGCFNAGNMYHH 194 (273)
T ss_dssp HHHHHHHHTT----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TCH---HHHHHHHHHHHH
T ss_pred HHHHHHHhcC----------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CCH---HHHHHHHHHHHc
Confidence 9999999741 24578899999999 99999999999999854 233 2334444333
Q ss_pred ----HHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHhcc
Q 000191 1114 ----SKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDT----KGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1114 ----qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~----qGdyeEAleyyeKALeL~dS 1175 (1888)
.+..+.+......... .++ ...+..+|.+|.. .+++++|+.+|++++++...
T Consensus 195 g~~~~~~~~~A~~~~~~a~~-------~~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 195 GEGATKNFKEALARYSKACE-------LEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp TCSSCCCHHHHHHHHHHHHH-------TTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCCCCccHHHHHHHHHHHHh-------CCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 3344444433322110 111 4578999999999 99999999999999987544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.58 E-value=4.4e-14 Score=162.32 Aligned_cols=240 Identities=14% Similarity=0.070 Sum_probs=179.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 973 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh 973 (1888)
..++.+|..++..|++++|+.+|++++.. .|....++..+|.+|..+|++++|+.++++++.+ .
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~ 85 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQA--------APEREEAWRSLGLTQAENEKDGLAIIALNHARML--------D 85 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------C
Confidence 44677889999999999999999999986 3556678999999999999999999999999987 3
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH----------HHHH-HH-HHHHCCCHHHHHHH
Q 000191 974 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAAT----------YINV-AM-MEEGLGNVHVALRY 1041 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a----------~~NL-A~-iy~~lG~yeeAle~ 1041 (1888)
|....++..+|.+|...|++++|+.+|++++.+. +.+...... ...+ +. ++...|++++|+.+
T Consensus 86 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 160 (327)
T 3cv0_A 86 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ-----PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTL 160 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-----TTTTTC--------------------CCTTSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHH
Confidence 5567889999999999999999999999998752 222221111 1112 44 58888999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 000191 1042 LHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQE 1121 (1888)
Q Consensus 1042 LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~Ae 1121 (1888)
++++++.. + ....++..+|.+|...|++++|+.++++++++ .+++.........+ +...+..+.+.
T Consensus 161 ~~~~~~~~-----~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~-~~~~~~~~~A~ 226 (327)
T 3cv0_A 161 LHAALEMN-----P---NDAQLHASLGVLYNLSNNYDSAAANLRRAVEL-----RPDDAQLWNKLGAT-LANGNRPQEAL 226 (327)
T ss_dssp HHHHHHHS-----T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHH-HHHTTCHHHHH
T ss_pred HHHHHhhC-----C---CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCcHHHHHHHHHH-HHHcCCHHHHH
Confidence 99999863 2 24567889999999999999999999999865 45555443333322 33344444444
Q ss_pred HHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhccc
Q 000191 1122 AARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 1176 (1888)
Q Consensus 1122 Al~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi 1176 (1888)
......... .+....++..+|.+|..+|++++|+.+|++++.+....
T Consensus 227 ~~~~~a~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 273 (327)
T 3cv0_A 227 DAYNRALDI--------NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGG 273 (327)
T ss_dssp HHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHc--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 333221100 11234578999999999999999999999999987663
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-13 Score=166.12 Aligned_cols=247 Identities=18% Similarity=0.106 Sum_probs=184.1
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000191 889 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 968 (1888)
Q Consensus 889 ~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~ 968 (1888)
....+..++.+|..++..|++++|+.+|++++.. +|....++..+|.+|..+|++++|+.++++++.+
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---- 89 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL---- 89 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----
Confidence 3456788999999999999999999999999976 4455789999999999999999999999999987
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh---hHH---------HHHHHHHHHHHHCCCHH
Q 000191 969 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP---NTA---------ATYINVAMMEEGLGNVH 1036 (1888)
Q Consensus 969 lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP---~~a---------~a~~NLA~iy~~lG~ye 1036 (1888)
.|....++..+|.+|..+|++++|+.+|++++.+ .++++ ... ..+..+|.+|...|+++
T Consensus 90 ----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 90 ----KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS-----NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160 (450)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 3556788999999999999999999999999864 23333 111 12455688899999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 000191 1037 VALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKA 1116 (1888)
Q Consensus 1037 eAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka 1116 (1888)
+|+.+|++++++. + ....++..+|.+|...|++++|+.++++++.+. +++......+..+ +...+.
T Consensus 161 ~A~~~~~~~~~~~-----~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~-~~~~g~ 226 (450)
T 2y4t_A 161 AAIAFLDKILEVC-----V---WDAELRELRAECFIKEGEPRKAISDLKAASKLK-----NDNTEAFYKISTL-YYQLGD 226 (450)
T ss_dssp HHHHHHHHHHHHC-----T---TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-----CSCHHHHHHHHHH-HHHTTC
T ss_pred HHHHHHHHHHHhC-----C---CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHH-HHHcCC
Confidence 9999999999763 2 345678899999999999999999999998763 5555443333222 333444
Q ss_pred HHHHHHHHhcCCCCchhhhhcCCccHHHH---------HHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000191 1117 FEQQEAARNGTRKPDASIASKGHLSVSDL---------LDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1117 ~e~AeAl~~~~~~~~~~~as~~~~svael---------L~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
.+.+......... ..++....... +..+|.++...|++++|+.+|++++++...
T Consensus 227 ~~~A~~~~~~~~~-----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~ 289 (450)
T 2y4t_A 227 HELSLSEVRECLK-----LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS 289 (450)
T ss_dssp HHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHH-----hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 4444433322110 01111111111 234489999999999999999999986543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-13 Score=167.65 Aligned_cols=242 Identities=14% Similarity=0.069 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...++.+|..++..|++++|+.+|++++.+ .|....++..+|.+|..+|++++|+.+|++++.+ .++
T Consensus 60 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~ 126 (450)
T 2y4t_A 60 YIAYYRRATVFLAMGKSKAALPDLTKVIQL--------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS-----NPS 126 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----CCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCC
Confidence 567788899999999999999999999987 3455678999999999999999999999999874 222
Q ss_pred Ch---hhH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 000191 973 HP---DTM---------KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALR 1040 (1888)
Q Consensus 973 hp---~ta---------~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle 1040 (1888)
+. ... ..+..+|.++...|++++|+.+|++++.+ .|....++.++|.+|...|++++|+.
T Consensus 127 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~ 198 (450)
T 2y4t_A 127 ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAIS 198 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCGGGGHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHCCCHHHHHH
Confidence 22 111 22456688899999999999999999975 24456778999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH-----------
Q 000191 1041 YLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL----------- 1109 (1888)
Q Consensus 1041 ~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~L----------- 1109 (1888)
+|+++++.. ++ ...++..+|.+|...|++++|+.++++++.+ .+++......+..+
T Consensus 199 ~~~~~~~~~-----~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~~~~~~~~~~~~~ 265 (450)
T 2y4t_A 199 DLKAASKLK-----ND---NTEAFYKISTLYYQLGDHELSLSEVRECLKL-----DQDHKRCFAHYKQVKKLNKLIESAE 265 (450)
T ss_dssp HHHHHHHHH-----CS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-----CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999874 22 3567889999999999999999999999854 46665544333111
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1110 EYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 1172 (1888)
Q Consensus 1110 a~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL 1172 (1888)
.++..+.++.+......... ....+......++..+|.+|...|++++|+.+|++++++
T Consensus 266 ~~~~~g~~~~A~~~~~~~l~----~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 266 ELIRDGRYTDATSKYESVMK----TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp HHHHHTCHHHHHHHHHHHHH----HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHh----cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 12233334333332221110 000111112346666777777777777777777777665
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2e-14 Score=178.32 Aligned_cols=134 Identities=15% Similarity=0.166 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+...++.++.....|+|++|+.+|+++|++.++++|++|+.++.++.+||.+|..+|+|++|+.+++++|.+.++++|.+
T Consensus 298 ~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~ 377 (433)
T 3qww_A 298 ARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY 377 (433)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence 44555556666678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVA 1026 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA 1026 (1888)
||+++..|+|||.+|..+|+|++|+.+|++|+++++..+|++||.+..++.+|.
T Consensus 378 Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 378 SLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998888764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-13 Score=152.90 Aligned_cols=181 Identities=12% Similarity=0.108 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...++..|..++..|++++|+.+|++++.+.. +....+++++|.+|..+|++++|+.++++++.+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------- 71 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-------NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK-------- 71 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-------TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccC-------CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------
Confidence 36788999999999999999999999998721 023357778999999999999999999999975
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN----TAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~----~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
+|....++.++|.+|..+|++++|+.+|++++.+. ++++. .+.++.++|.++..+|++++|+.+|++++++
T Consensus 72 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 72 NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-----PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 56678899999999999999999999999999862 34442 3477999999999999999999999999975
Q ss_pred HHHhcCCCcHH--HHHHHHHHHHHHHHcCCh---------------------------HHHHHHHHHHHHHHHHhcCCCC
Q 000191 1049 NQRLLGPDHIQ--TAASYHAIAIALSLMEAY---------------------------PLSVQHEQTTLQILRAKLGPDD 1099 (1888)
Q Consensus 1049 ~ek~~G~d~~~--tA~al~nLA~ay~~lGdy---------------------------deAle~lqkALeI~kk~LG~dh 1099 (1888)
.+. ...+++++|.+|..+|+. ++|+.++++++++ .+++
T Consensus 147 --------~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l-----~p~~ 213 (228)
T 4i17_A 147 --------TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL-----SPNR 213 (228)
T ss_dssp --------SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CTTC
T ss_pred --------CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCCC
Confidence 345 678889999999888877 6677777766644 5666
Q ss_pred HHHHHHH
Q 000191 1100 LRTQDAA 1106 (1888)
Q Consensus 1100 ~~tl~a~ 1106 (1888)
......+
T Consensus 214 ~~~~~~l 220 (228)
T 4i17_A 214 TEIKQMQ 220 (228)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6554443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.56 E-value=3.5e-13 Score=166.80 Aligned_cols=94 Identities=22% Similarity=0.214 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
..+..++.+|..++..|++++|+.+|++++.. +|....++..+|.+|..+|++++|+.++++++.+
T Consensus 23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 88 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--------DPNEPVFYSNISACYISTGDLEKVIEFTTKALEI------ 88 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------
Confidence 45788999999999999999999999999987 4556789999999999999999999999999987
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Q 000191 971 LDHPDTMKSYGDLAVFYYRLQHTELALKYV 1000 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGdyeeALey~ 1000 (1888)
+|....++..+|.+|..+|++++|+.+|
T Consensus 89 --~p~~~~~~~~la~~~~~~g~~~~A~~~~ 116 (537)
T 3fp2_A 89 --KPDHSKALLRRASANESLGNFTDAMFDL 116 (537)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred --CCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4566788999999999999999998866
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.56 E-value=5.5e-14 Score=161.52 Aligned_cols=250 Identities=12% Similarity=0.023 Sum_probs=180.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...++.+|..+...|++++|+.++++++.+ .+....++..+|.+|..+|++++|+.++++++... ++
T Consensus 55 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~ 121 (327)
T 3cv0_A 55 EEAWRSLGLTQAENEKDGLAIIALNHARML--------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ-----PQ 121 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-----TT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----Cc
Confidence 456777899999999999999999999987 34556789999999999999999999999998762 22
Q ss_pred ChhhHHHH----------HHH-HH-HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 000191 973 HPDTMKSY----------GDL-AV-FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALR 1040 (1888)
Q Consensus 973 hp~ta~ay----------~nL-A~-ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle 1040 (1888)
+......+ ..+ +. ++...|++++|+.++++++.. .|....++..+|.+|...|++++|+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~ 193 (327)
T 3cv0_A 122 YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--------NPNDAQLHASLGVLYNLSNNYDSAAA 193 (327)
T ss_dssp TTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 22211111 122 44 588899999999999999975 23446788999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 000191 1041 YLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQ 1120 (1888)
Q Consensus 1041 ~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~A 1120 (1888)
+|+++++.. + ....++..+|.+|...|++++|+.++++++++ .+++......+..+ ++..+..+.+
T Consensus 194 ~~~~~~~~~-----~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~-~~~~g~~~~A 259 (327)
T 3cv0_A 194 NLRRAVELR-----P---DDAQLWNKLGATLANGNRPQEALDAYNRALDI-----NPGYVRVMYNMAVS-YSNMSQYDLA 259 (327)
T ss_dssp HHHHHHHHC-----T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHH-HHHTTCHHHH
T ss_pred HHHHHHHhC-----C---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHH-HHHhccHHHH
Confidence 999999873 2 23567889999999999999999999999865 45555543333222 3344444444
Q ss_pred HHHHhcCCCCchhhhhcC----CccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1121 EAARNGTRKPDASIASKG----HLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1121 eAl~~~~~~~~~~~as~~----~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
.................. ......++..++.+|..+|++++|..++++++++...-.
T Consensus 260 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 320 (327)
T 3cv0_A 260 AKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEF 320 (327)
T ss_dssp HHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHT
T ss_pred HHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhh
Confidence 433321110000000000 111567899999999999999999999999988876644
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.2e-13 Score=171.37 Aligned_cols=239 Identities=13% Similarity=0.087 Sum_probs=180.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000191 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 975 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ 975 (1888)
+..++..+...|++++|+.++++++.. .+....++..||.+|...|++++|+.+|++++.+ .+.
T Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~ 405 (597)
T 2xpi_A 342 YPLHLASLHESGEKNKLYLISNDLVDR--------HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--------DPQ 405 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCC
Confidence 444566777788888888888887754 3445678899999999999999999999999886 355
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 976 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 1055 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~ 1055 (1888)
...+|..+|.+|...|++++|+++|++++.+ . |....++..+|.+|...|++++|+.+|++++++. +
T Consensus 406 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~ 472 (597)
T 2xpi_A 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARL-----F---QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-----Q 472 (597)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----T---TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----C
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C---ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C
Confidence 6778999999999999999999999999864 2 3345678889999999999999999999998763 3
Q ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCCchh
Q 000191 1056 DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE--YFESKAFEQQEAARNGTRKPDAS 1133 (1888)
Q Consensus 1056 d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La--~L~qka~e~AeAl~~~~~~~~~~ 1133 (1888)
. ...++..+|.+|...|++++|+.++++++++.... +.+.......+..++ +...+.++.+..........
T Consensus 473 ~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 545 (597)
T 2xpi_A 473 Y---DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT-QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL--- 545 (597)
T ss_dssp C---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred C---ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc-ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---
Confidence 3 34568899999999999999999999999886542 222211123333333 33344445444333221100
Q ss_pred hhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000191 1134 IASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1134 ~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
.+....++..++.+|...|++++|+.+|++++++...
T Consensus 546 -----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 546 -----STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp -----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred -----CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 1123468999999999999999999999999998643
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.7e-14 Score=175.86 Aligned_cols=140 Identities=10% Similarity=0.052 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..++.....+..+|+|++|+.+++++|++.++++|++|+.++.++.+||.+|..+|+|++|+.++++++.++++++|.+
T Consensus 287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~ 366 (429)
T 3qwp_A 287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS 366 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC
Confidence 44555556667789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL 1032 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~l 1032 (1888)
||.++..|++||.+|..+|++++|+.+|++|+++++..+|++||.++.++.+|+.++..+
T Consensus 367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999887654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=7e-14 Score=173.44 Aligned_cols=122 Identities=16% Similarity=0.067 Sum_probs=118.6
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 000191 947 HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVA 1026 (1888)
Q Consensus 947 ~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA 1026 (1888)
..|+|++|+.+++++|.+.++++|.+|+.++.++++||.+|..+|+|++|+.++++++.++++.+|++||+++.+++|||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 000191 1027 MMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIA 1068 (1888)
Q Consensus 1027 ~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA 1068 (1888)
.+|..+|+|++|+.+|++|+++.+..+|++|+.++.++.+|.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 999999999999999999999999999999999998887764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.2e-13 Score=163.04 Aligned_cols=250 Identities=14% Similarity=0.019 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
..+..++.+|..++..|++++|+.+|++++... |. ..++..+|.+|..+|++++|+.++++++.+
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 68 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELK--------ED-PVFYSNLSACYVSVGDLKKVVEMSTKALEL------ 68 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--------CC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--------cc-HHHHHhHHHHHHHHhhHHHHHHHHHHHhcc------
Confidence 457889999999999999999999999999872 32 578999999999999999999999999986
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----------------------hc----------------
Q 000191 971 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL-----------------------TC---------------- 1011 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~k-----------------------i~---------------- 1011 (1888)
+|....++..+|.+|..+|++++|+.+|++++.+... .+
T Consensus 69 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 146 (514)
T 2gw1_A 69 --KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQ 146 (514)
T ss_dssp --CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------
T ss_pred --ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Confidence 4666789999999999999999999999998764210 00
Q ss_pred --------CC------------------------CChhHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHhc--C
Q 000191 1012 --------GP------------------------SHPNTAATYINVAMMEEG---LGNVHVALRYLHKALKCNQRLL--G 1054 (1888)
Q Consensus 1012 --------G~------------------------dhP~~a~a~~NLA~iy~~---lG~yeeAle~LekALei~ek~~--G 1054 (1888)
.. ..|.....+..+|.++.. .|++++|+.+|+++++.+.... .
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 226 (514)
T 2gw1_A 147 PAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKN 226 (514)
T ss_dssp ----------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred hhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccC
Confidence 00 002336677788888876 8999999999999999665443 2
Q ss_pred CCc----HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHhcCC
Q 000191 1055 PDH----IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES--KAFEQQEAARNGTR 1128 (1888)
Q Consensus 1055 ~d~----~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~q--ka~e~AeAl~~~~~ 1128 (1888)
+++ +..+.+++.+|.+|...|++++|+.++++++.+ .++ . .+...++.+.. +..+.+........
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~~~-~---~~~~~l~~~~~~~~~~~~A~~~~~~~~ 297 (514)
T 2gw1_A 227 NEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL-----FPR-V---NSYIYMALIMADRNDSTEYYNYFDKAL 297 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH-----CCC-H---HHHHHHHHHHHTSSCCTTGGGHHHHHH
T ss_pred ccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----Ccc-H---HHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 333 667889999999999999999999999999865 344 2 33333333322 22222221111110
Q ss_pred CCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000191 1129 KPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1129 ~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
...+....++..+|.+|...|++++|+.+|++++++..
T Consensus 298 --------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 335 (514)
T 2gw1_A 298 --------KLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP 335 (514)
T ss_dssp --------TTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS
T ss_pred --------hcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh
Confidence 01112234678888888889999999999988887643
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-13 Score=168.88 Aligned_cols=244 Identities=13% Similarity=0.045 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000191 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 969 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~l 969 (1888)
...+..++.+|..+...|++++|+.+|++++.. .+. ..++..+|.+|..+|++++|+.++++++.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----- 299 (514)
T 2gw1_A 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL--------FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKL----- 299 (514)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT-----
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc-----
Confidence 455778889999999999999999999999986 233 788999999999999999999999999875
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 970 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
.+....++..+|.+|...|++++|+.+|++++.+ . |....++.++|.+|...|++++|+.+|+++++..
T Consensus 300 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 368 (514)
T 2gw1_A 300 ---DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL-----D---PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF 368 (514)
T ss_dssp ---CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT-----C---SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS
T ss_pred ---CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----C---hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 3445668999999999999999999999999875 2 3334578899999999999999999999999863
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--HHH---HHHHHHHHHHH
Q 000191 1050 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE--YFE---SKAFEQQEAAR 1124 (1888)
Q Consensus 1050 ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La--~L~---qka~e~AeAl~ 1124 (1888)
++ ...++..+|.+|...|++++|+.++++++.+........ ....+...++ ++. .+.++.+....
T Consensus 369 -----~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~A~~~~ 438 (514)
T 2gw1_A 369 -----PE---APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY--VGIAPLVGKATLLTRNPTVENFIEATNLL 438 (514)
T ss_dssp -----TT---CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS--SCSHHHHHHHHHHHTSCCTTHHHHHHHHH
T ss_pred -----cc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH--HHHHHHHHHHHHHhhhhhcCCHHHHHHHH
Confidence 22 335788899999999999999999999998754321100 0011222333 233 34444444333
Q ss_pred hcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhccc
Q 000191 1125 NGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 1176 (1888)
Q Consensus 1125 ~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi 1176 (1888)
...... .+....++..+|.+|..+|++++|+.+|++++++....
T Consensus 439 ~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 482 (514)
T 2gw1_A 439 EKASKL--------DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482 (514)
T ss_dssp HHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH
T ss_pred HHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc
Confidence 221100 11234678999999999999999999999999987653
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.53 E-value=5.1e-14 Score=165.55 Aligned_cols=240 Identities=13% Similarity=0.063 Sum_probs=170.4
Q ss_pred HHHHcCChHHHHH-HHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 000191 902 TALDKGKLEDAVT-YGTKALAKLVAVCGPYHRM-TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS 979 (1888)
Q Consensus 902 ~~l~qGd~dEAie-~~eeAL~l~eqi~G~dhpe-~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~a 979 (1888)
.+...|+|++|+. .|++++.+ .+.++. .+..+..+|.+|+..|++++|+.++++++.+ +|....+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~ 100 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQF-----EEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHMEA 100 (368)
T ss_dssp ------------CHHHHCCCCC-----CSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHH
T ss_pred hhHHHHHHHHHHhhhhhHHHhc-----CCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHH
Confidence 4556789999999 88888754 223332 2467889999999999999999999999975 4566788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC----
Q 000191 980 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP---- 1055 (1888)
Q Consensus 980 y~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~---- 1055 (1888)
+.++|.+|..+|++++|+.+|++++.+ +|....++.++|.+|..+|++++|+.+|++++++.......
T Consensus 101 ~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 172 (368)
T 1fch_A 101 WQYLGTTQAENEQELLAISALRRCLEL--------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPA 172 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC--
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 999999999999999999999999986 24456788999999999999999999999888643211000
Q ss_pred -------------------------------------CcHH--HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 000191 1056 -------------------------------------DHIQ--TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 1096 (1888)
Q Consensus 1056 -------------------------------------d~~~--tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG 1096 (1888)
..+. .+.++..+|.+|...|++++|+.++++++.+ .
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~ 247 (368)
T 1fch_A 173 EEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-----R 247 (368)
T ss_dssp -------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C
T ss_pred HHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C
Confidence 0111 3577889999999999999999999999876 4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhccc
Q 000191 1097 PDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 1176 (1888)
Q Consensus 1097 ~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi 1176 (1888)
+++......+..+ +...+.++.+.......... .+....++..+|.+|..+|++++|+.+|++++++....
T Consensus 248 ~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 248 PNDYLLWNKLGAT-LANGNQSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp TTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 5555433332222 33344444444333221110 12334678999999999999999999999999998765
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-13 Score=153.76 Aligned_cols=163 Identities=21% Similarity=0.145 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhc-----------CCHHHHHHHHHHH
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT-----------GDFNQATIYQQKA 961 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~l-----------GdyeeAl~~~eKA 961 (1888)
...++.+|.++...|++++|+.+|++++.+ .|....++.+||.+|..+ |++++|+..++++
T Consensus 39 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 110 (217)
T 2pl2_A 39 PEALYWLARTQLKLGLVNPALENGKTLVAR--------TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDA 110 (217)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHH
Confidence 566888899999999999999999999987 466678999999999999 9999999999999
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHH
Q 000191 962 LDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRY 1041 (1888)
Q Consensus 962 L~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~ 1041 (1888)
+.+ .|....++.++|.+|..+|++++|+.+|++|+.+. + ...++.++|.+|..+|++++|+.+
T Consensus 111 l~~--------~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------~---~~~~~~~la~~~~~~g~~~~A~~~ 173 (217)
T 2pl2_A 111 ERV--------NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE------D---TPEIRSALAELYLSMGRLDEALAQ 173 (217)
T ss_dssp HHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------C---CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHh--------CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc------c---chHHHHHHHHHHHHcCCHHHHHHH
Confidence 997 46677889999999999999999999999999872 2 346788999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000191 1042 LHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 1088 (1888)
Q Consensus 1042 LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkAL 1088 (1888)
|++++++. |....++.++|.+|..+|++++|+.+++++.
T Consensus 174 ~~~al~~~--------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 174 YAKALEQA--------PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHS--------TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHhC--------CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999873 3445778899999999999999999998764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-12 Score=144.38 Aligned_cols=184 Identities=17% Similarity=0.148 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--------
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI-------- 964 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I-------- 964 (1888)
...++.+|..+...|++++|+.++++++.+.... +.+.+..+.++..+|.+|..+|++++|+.++++++.+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 116 (258)
T 3uq3_A 38 ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM-RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILT 116 (258)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHH
Confidence 4567888999999999999999999999986543 2344455789999999999999999999999999984
Q ss_pred -----------HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC
Q 000191 965 -----------NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG 1033 (1888)
Q Consensus 965 -----------~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG 1033 (1888)
+++... ..+....++.++|.+|...|++++|+.+|++++.+ +|....++.++|.+|..+|
T Consensus 117 ~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~ 187 (258)
T 3uq3_A 117 KLRNAEKELKKAEAEAY-VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLM 187 (258)
T ss_dssp HHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHHHHHH-cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhC
Confidence 122111 35778889999999999999999999999999986 2344578899999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000191 1034 NVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 1094 (1888)
Q Consensus 1034 ~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~ 1094 (1888)
++++|+.+|++++++. + ....++..+|.+|..+|++++|+.++++++++....
T Consensus 188 ~~~~A~~~~~~al~~~-----~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 240 (258)
T 3uq3_A 188 SFPEAIADCNKAIEKD-----P---NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEV 240 (258)
T ss_dssp CHHHHHHHHHHHHHHC-----T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-----H---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhh
Confidence 9999999999999873 2 345678899999999999999999999999887554
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.2e-13 Score=169.91 Aligned_cols=243 Identities=12% Similarity=0.114 Sum_probs=187.7
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
+...++.+|..+...|++++|+.+|++++.. + +....++..++.+|...|++++|+.++++++..
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------- 368 (597)
T 2xpi_A 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEI-----D---PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR------- 368 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C---TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc-----C---cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-------
Confidence 4566788899999999999999999999876 2 233457889999999999999999999999854
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
.+....++..||.+|...|++++|+.+|++++.+ .|....+++.+|.+|...|++++|+.+|+++++..
T Consensus 369 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 437 (597)
T 2xpi_A 369 -HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--------DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-- 437 (597)
T ss_dssp -CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--
T ss_pred -CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 3556788999999999999999999999999875 34456788999999999999999999999998753
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 000191 1052 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD 1131 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~ 1131 (1888)
++ ...++..+|.+|...|++++|+.++++++++ .+++..+...+..+ +...+.++.+..+........
T Consensus 438 ---~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~ 505 (597)
T 2xpi_A 438 ---QG---THLPYLFLGMQHMQLGNILLANEYLQSSYAL-----FQYDPLLLNELGVV-AFNKSDMQTAINHFQNALLLV 505 (597)
T ss_dssp ---TT---CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHH
T ss_pred ---cc---chHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHH-HHHhCCHHHHHHHHHHHHHhh
Confidence 22 3467888999999999999999999999865 46666554433332 334444555444333211100
Q ss_pred hhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 000191 1132 ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 1173 (1888)
Q Consensus 1132 ~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~ 1173 (1888)
.. ..........++..++.+|...|++++|+.+|++++++.
T Consensus 506 ~~-~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 506 KK-TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HH-SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hc-cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 00 011122236789999999999999999999999999875
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=9.6e-14 Score=172.11 Aligned_cols=130 Identities=17% Similarity=0.075 Sum_probs=125.8
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 000191 945 LYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 1024 (1888)
Q Consensus 945 y~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~N 1024 (1888)
+..+|+|++|+.++++++.+.++++|.+|+.++.++.+||.+|..+|+|++|+.++++++.++++.+|++||.++..++|
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 55789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHc
Q 000191 1025 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLM 1074 (1888)
Q Consensus 1025 LA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~l 1074 (1888)
||.+|..+|++++|+.+|++|+++.+..+|++|+.++.++.+|+.+...+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.7e-13 Score=135.42 Aligned_cols=157 Identities=22% Similarity=0.244 Sum_probs=138.5
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000191 931 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010 (1888)
Q Consensus 931 hpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki 1010 (1888)
....+.++..+|.+|+.+|++++|+.++++++.+.++. .+....+.++.++|.+|..+|++++|+.++++++.+....
T Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 82 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 44567899999999999999999999999999998774 3445667899999999999999999999999999998764
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1011 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1011 ~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
.+.+..+.++.++|.+|..+|++++|+.++++++++.... .+....+.++..+|.+|..+|++++|+.++++++++
T Consensus 83 --~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 83 --KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp --TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445668889999999999999999999999999998765 345677889999999999999999999999999988
Q ss_pred HHH
Q 000191 1091 LRA 1093 (1888)
Q Consensus 1091 ~kk 1093 (1888)
+++
T Consensus 159 ~~~ 161 (164)
T 3ro3_A 159 SRE 161 (164)
T ss_dssp HTT
T ss_pred HHH
Confidence 753
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-13 Score=170.68 Aligned_cols=169 Identities=16% Similarity=0.108 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 892 DGRQLLESSKTALDKGKL-EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~-dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
.+..++.+|..++..|++ ++|+.+|++|+.+ +|..+.++..||.+|+.+|++++|+.+|++|+.+
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~------ 166 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--------EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH------ 166 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT------
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------
Confidence 367788999999999999 9999999999987 4566789999999999999999999999999986
Q ss_pred CCChhhHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC--------C
Q 000191 971 LDHPDTMKSYGDLAVFYYRL---------QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL--------G 1033 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~l---------GdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~l--------G 1033 (1888)
.|. ..++.+||.+|..+ |++++|+.+|++|+.+ +|....+++++|.+|..+ |
T Consensus 167 --~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 167 --CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--------DVLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp --CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred --CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHhhccccc
Confidence 244 58899999999999 9999999999999986 355567899999999999 9
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1034 NVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1034 ~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
++++|+.+|++|+++. +.....+.+++++|.+|..+|++++|+.+|++|+++
T Consensus 236 ~~~~A~~~~~~al~~~-----p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 236 ISQQALSAYAQAEKVD-----RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHHHC-----GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-----CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999873 212256788999999999999999999999999865
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=9e-13 Score=148.14 Aligned_cols=230 Identities=12% Similarity=-0.030 Sum_probs=165.9
Q ss_pred HcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 000191 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLA 984 (1888)
Q Consensus 905 ~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA 984 (1888)
..|++++|+.+|++++... ....+..+.++..+|.+|..+|++++|+.++++++.+ +|....++.++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la 84 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASR----ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLG 84 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhcc----cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcHHHHHHHH
Confidence 4578999999999998751 1234677899999999999999999999999999987 355677899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 000191 985 VFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASY 1064 (1888)
Q Consensus 985 ~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al 1064 (1888)
.+|...|++++|+.+|++++.+ .|....++.++|.+|..+|++++|+.+|++++++. +++.. .+
T Consensus 85 ~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~~~~~---~~ 148 (275)
T 1xnf_A 85 IYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-----PNDPF---RS 148 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHH---HH
T ss_pred HHHHHccCHHHHHHHHHHHHhc--------CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCChH---HH
Confidence 9999999999999999999986 23345778999999999999999999999999864 33332 22
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHH
Q 000191 1065 HAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSD 1144 (1888)
Q Consensus 1065 ~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svae 1144 (1888)
..++ ++...|++++|+.++++++... +.+..... ... .++.....+.+............. ..+....
T Consensus 149 ~~~~-~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~-~~~-~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~ 216 (275)
T 1xnf_A 149 LWLY-LAEQKLDEKQAKEVLKQHFEKS-----DKEQWGWN-IVE-FYLGNISEQTLMERLKADATDNTS----LAEHLSE 216 (275)
T ss_dssp HHHH-HHHHHHCHHHHHHHHHHHHHHS-----CCCSTHHH-HHH-HHTTSSCHHHHHHHHHHHCCSHHH----HHHHHHH
T ss_pred HHHH-HHHHhcCHHHHHHHHHHHHhcC-----CcchHHHH-HHH-HHHHhcCHHHHHHHHHHHhccccc----ccccccH
Confidence 2223 4466799999999999888642 22221111 111 111111122222222221111111 0112357
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000191 1145 LLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1145 lL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
++..+|.+|..+|++++|+.+|++++.+..
T Consensus 217 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 217 TNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 899999999999999999999999998754
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-12 Score=137.23 Aligned_cols=168 Identities=17% Similarity=0.201 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+..++.+|..+...|++++|+.++++++.. .+....++..+|.+|..+|++++|+.++++++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------- 71 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDA--------DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD------- 71 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------
Confidence 4667888999999999999999999998754 3445678999999999999999999999999986
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
.+....++.++|.+|...|++++|+.++++++.+ +|....++.++|.+|...|++++|+.+|+++++..
T Consensus 72 -~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-- 140 (186)
T 3as5_A 72 -APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-- 140 (186)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred -CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--
Confidence 3455778999999999999999999999999986 23445678899999999999999999999999873
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000191 1052 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
+. ...++..+|.+|...|++++|+.++++++++.
T Consensus 141 ---~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 141 ---PN---EGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp ---TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---cc---chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 22 35678899999999999999999999998765
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-12 Score=142.40 Aligned_cols=179 Identities=20% Similarity=0.224 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...++.+|..+...|++++|+.++++++.. .+....++..+|.+|..+|++++|+.++++++.+.
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------- 121 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALEL--------DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG------- 121 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------
Confidence 566788899999999999999999999987 34456789999999999999999999999999862
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
+....++..+|.+|...|++++|+.++++++.+ .|....++.++|.+|...|++++|+.+|+++++..
T Consensus 122 -~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--- 189 (243)
T 2q7f_A 122 -MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--------NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD--- 189 (243)
T ss_dssp -CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC---
T ss_pred -CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence 334668899999999999999999999999986 23345678899999999999999999999998863
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAW 1108 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~ 1108 (1888)
+ ....++..+|.+|...|++++|+.++++++++ .+++......+..
T Consensus 190 --~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 190 --P---GHADAFYNAGVTYAYKENREKALEMLDKAIDI-----QPDHMLALHAKKL 235 (243)
T ss_dssp --T---TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH-----CTTCHHHHHHHTC
T ss_pred --c---ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc-----CcchHHHHHHHHH
Confidence 2 23557889999999999999999999999865 5677665544433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-12 Score=139.30 Aligned_cols=172 Identities=9% Similarity=-0.021 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+..++.+|..+...|++++|+.++++++.+.... .+.+..+.++.++|.+|..+|++++|+.++++++.++++. +.
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~ 101 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS--GDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASL-PE 101 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-CC
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-Cc
Confidence 46778889999999999999999999999998765 3566778999999999999999999999999999998863 33
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
+......++.++|.+|..+|++++|+.++++++.+.... .+....+.++.++|.+|..+|++++|+.++++++++.++
T Consensus 102 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 102 DPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA--DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 333678899999999999999999999999999987663 233455778899999999999999999999999999877
Q ss_pred hcCCCcHHHHHHHHHHHHH
Q 000191 1052 LLGPDHIQTAASYHAIAIA 1070 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~a 1070 (1888)
. .+....+.++..++.+
T Consensus 180 ~--~~~~~~~~~~~~~~~~ 196 (203)
T 3gw4_A 180 L--EDSEAVNELMTRLNGL 196 (203)
T ss_dssp T--TCHHHHHHHHHHHHTT
T ss_pred c--CCHHHHHHHHhcccch
Confidence 6 3444555555555544
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.8e-12 Score=130.82 Aligned_cols=156 Identities=22% Similarity=0.218 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000191 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 969 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~l 969 (1888)
...+..++.+|..++..|++++|+.++++++.+.... .+....+.++..+|.+|..+|++++|+.++++++.+.+..
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~- 82 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL- 82 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-
Confidence 3457788999999999999999999999999998775 3455667899999999999999999999999999998774
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 970 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
.+......++.++|.+|..+|++++|+.++++++.+.... .+++....++.++|.+|..+|++++|+.++++++++.
T Consensus 83 -~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 83 -KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 3455667899999999999999999999999999998764 3456778899999999999999999999999999987
Q ss_pred HH
Q 000191 1050 QR 1051 (1888)
Q Consensus 1050 ek 1051 (1888)
++
T Consensus 160 ~~ 161 (164)
T 3ro3_A 160 RE 161 (164)
T ss_dssp TT
T ss_pred HH
Confidence 54
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.3e-12 Score=138.79 Aligned_cols=200 Identities=11% Similarity=0.040 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 1014 (1888)
Q Consensus 935 A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~d 1014 (1888)
+.++..+|.+|+.+|++++|+.+|++++.+.. +....++.++|.+|..+|++++|+.+|++++.+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------- 71 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-------NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK-------- 71 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-------TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccC-------CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------
Confidence 36899999999999999999999999998731 133467788999999999999999999999974
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1015 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI----QTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1015 hP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~----~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
+|....++.++|.+|..+|++++|+.+|++++++. +++. ..+.++.++|.++..+|++++|+.++++++++
T Consensus 72 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 72 NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-----PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 46678899999999999999999999999999874 3333 24577999999999999999999999999854
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000191 1091 LRAKLGPDDLRTQDAAAWLEYFESKAFEQ--QEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTY 1168 (1888)
Q Consensus 1091 ~kk~LG~dh~~tl~a~~~La~L~qka~e~--AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeK 1168 (1888)
.+++. ...+...++.+....... .++..... . . ...+.+......+.|++|+.+|++
T Consensus 147 -----~p~~~-~~~~~~~l~~~~~~~~~~~~~~a~~~~~---------~---~---~~~~~~~~~~~~~~~~~A~~~~~~ 205 (228)
T 4i17_A 147 -----TSKKW-KTDALYSLGVLFYNNGADVLRKATPLAS---------S---N---KEKYASEKAKADAAFKKAVDYLGE 205 (228)
T ss_dssp -----SCHHH-HHHHHHHHHHHHHHHHHHHHHHHGGGTT---------T---C---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCCcc-cHHHHHHHHHHHHHHHHHHHHHHHhccc---------C---C---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23300 334455555444333322 11111110 0 1 122334445667889999999999
Q ss_pred HHHHhcc
Q 000191 1169 VAKVKGN 1175 (1888)
Q Consensus 1169 ALeL~dS 1175 (1888)
++++...
T Consensus 206 a~~l~p~ 212 (228)
T 4i17_A 206 AVTLSPN 212 (228)
T ss_dssp HHHHCTT
T ss_pred HhhcCCC
Confidence 9998654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=5e-13 Score=167.06 Aligned_cols=217 Identities=16% Similarity=0.133 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 000191 911 DAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDF-NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR 989 (1888)
Q Consensus 911 EAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdy-eeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~ 989 (1888)
.....+.+++..+.... ...+..+.+++.+|.+|..+|++ ++|+.+|++|+.+ .|....++++||.+|..
T Consensus 79 ~~~~~~~~al~~l~~~~-~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~ 149 (474)
T 4abn_A 79 DVQEEMEKTLQQMEEVL-GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--------EPELVEAWNQLGEVYWK 149 (474)
T ss_dssp HHHHHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHH
Confidence 44455666666655543 23456788999999999999999 9999999999987 46667899999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 000191 990 LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL---------GNVHVALRYLHKALKCNQRLLGPDHIQT 1060 (1888)
Q Consensus 990 lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~l---------G~yeeAle~LekALei~ek~~G~d~~~t 1060 (1888)
+|++++|+.+|++|+.+ .|. ..++.++|.+|..+ |++++|+.+|++|+++. +..
T Consensus 150 ~g~~~~A~~~~~~al~~--------~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------p~~ 212 (474)
T 4abn_A 150 KGDVTSAHTCFSGALTH--------CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--------VLD 212 (474)
T ss_dssp HTCHHHHHHHHHHHHTT--------CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--------TTC
T ss_pred cCCHHHHHHHHHHHHhh--------CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--------CCC
Confidence 99999999999999975 244 48899999999999 99999999999999873 334
Q ss_pred HHHHHHHHHHHHHc--------CChHHHHHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000191 1061 AASYHAIAIALSLM--------EAYPLSVQHEQTTLQILRAKLGP---DDLRTQDAAAWLEYFESKAFEQQEAARNGTRK 1129 (1888)
Q Consensus 1061 A~al~nLA~ay~~l--------GdydeAle~lqkALeI~kk~LG~---dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~ 1129 (1888)
..+++++|.+|..+ |++++|+.+|++|+++ .+ ++......+..+ +...+.++.+.........
T Consensus 213 ~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 213 GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV-----DRKASSNPDLHLNRATL-HKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-----CGGGGGCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh-----CCCcccCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHH
Confidence 57889999999999 9999999999999976 34 343332222221 2233334443333222110
Q ss_pred CchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000191 1130 PDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKT 1167 (1888)
Q Consensus 1130 ~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyye 1167 (1888)
. .+....++..++.++...|++++|+..+.
T Consensus 287 l--------~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 287 L--------DPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp H--------CTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred h--------CCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 11223567777777777777777776553
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-12 Score=150.95 Aligned_cols=197 Identities=10% Similarity=-0.022 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 1013 (1888)
Q Consensus 934 ~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~ 1013 (1888)
....+...+..+...|+|++|+.++++++..... ..+.......+..+|.+|...|++++|+.+|++|+.+.... .
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~ 149 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY--HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG--I 149 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC--CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS--S
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC--ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC--C
Confidence 3456667888999999999999999999886321 01112344667789999999999999999999999864331 2
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000191 1014 SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 1093 (1888)
Q Consensus 1014 dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk 1093 (1888)
+....+.+++++|.+|..+|++++|+.+|++|+++.+... .+....+.+++++|.+|..+|+|++|+.++++|+.+...
T Consensus 150 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~-~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH-DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC-ccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 3344577999999999999999999999999999887652 222223479999999999999999999999999977421
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHH
Q 000191 1094 KLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVST-LKRKTYVAKV 1172 (1888)
Q Consensus 1094 ~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEA-leyyeKALeL 1172 (1888)
. ........++..+|.+|..+|++++| ..+|++|+.+
T Consensus 229 ~------------------------------------------~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 229 I------------------------------------------NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp T------------------------------------------TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred c------------------------------------------CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 1 01123456799999999999999999 8899999999
Q ss_pred hcccc
Q 000191 1173 KGNFY 1177 (1888)
Q Consensus 1173 ~dSi~ 1177 (1888)
.+.+.
T Consensus 267 ~~~~~ 271 (293)
T 2qfc_A 267 FDILE 271 (293)
T ss_dssp HHHTT
T ss_pred HHHhC
Confidence 98876
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.45 E-value=5.6e-12 Score=140.94 Aligned_cols=176 Identities=14% Similarity=0.094 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..++.+|..++..|++++|+.+|++++.. .+.++....++..+|.+|+.+|++++|+..|++++.. .++
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-----~P~ 73 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPT 73 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcC
Confidence 456888999999999999999999999986 2455666789999999999999999999999999986 456
Q ss_pred ChhhHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHHHHHhcCCCChhHHH--------------
Q 000191 973 HPDTMKSYGDLAVFYYR------------------LQHTELALKYVKRALYLLHLTCGPSHPNTAA-------------- 1020 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~------------------lGdyeeALey~~kALeL~~ki~G~dhP~~a~-------------- 1020 (1888)
++....+++.+|.+|.. +|++++|+.+|++++.. -++++....
T Consensus 74 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~P~~~~a~~a~~~l~~~~~~~~~ 148 (225)
T 2yhc_A 74 HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG-----YPNSQYTTDATKRLVFLKDRLAK 148 (225)
T ss_dssp CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT-----CTTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH-----CcCChhHHHHHHHHHHHHHHHHH
Confidence 66667789999999886 57899999999999874 244443322
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000191 1021 TYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 1088 (1888)
Q Consensus 1021 a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkAL 1088 (1888)
....+|.+|...|++++|+..|+++++.. ++++....+++.+|.+|..+|++++|+..++++.
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 22578999999999999999999999875 6667777899999999999999999999988665
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.45 E-value=4.9e-12 Score=146.90 Aligned_cols=193 Identities=11% Similarity=0.009 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000191 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT---MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 1011 (1888)
Q Consensus 935 A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~t---a~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~ 1011 (1888)
...+...+..+...|+|++|+.++++++... ...+.. +..+..+|.+|...+++++|+.+|++|+.+...
T Consensus 75 ~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~-- 147 (293)
T 3u3w_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-----EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT-- 147 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC--
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhccc-----cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc--
Confidence 3445566788899999999999999998742 223332 445667999999999999999999999985322
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000191 1012 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1012 G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
..+....+.+++++|.+|..+|++++|+.+|++|+++.... ..+....+.+++++|.+|..+|+|++|+.++++|+++.
T Consensus 148 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~ 226 (293)
T 3u3w_A 148 GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 22333457789999999999999999999999999988765 23667788899999999999999999999999999775
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCC-hHHHHHHHHHHH
Q 000191 1092 RAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGR-NVSTLKRKTYVA 1170 (1888)
Q Consensus 1092 kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGd-yeEAleyyeKAL 1170 (1888)
... .+....+.++..+|.+|..+|+ +++|+.+|++|+
T Consensus 227 ~~~------------------------------------------~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 227 CRI------------------------------------------NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHT------------------------------------------TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHc------------------------------------------CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 432 1122456789999999999995 699999999999
Q ss_pred HHhcccc
Q 000191 1171 KVKGNFY 1177 (1888)
Q Consensus 1171 eL~dSi~ 1177 (1888)
.+...++
T Consensus 265 ~i~~~~~ 271 (293)
T 3u3w_A 265 FFFDILE 271 (293)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 9999876
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.1e-12 Score=154.67 Aligned_cols=236 Identities=8% Similarity=-0.032 Sum_probs=190.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC---------CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 000191 895 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP---------YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 965 (1888)
Q Consensus 895 ~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~---------dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~ 965 (1888)
..++.|+.+...|+|++|++.|.+++......... .......++..||.+|..+|++++|+.++.+++.+.
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 35667888899999999999999999864322110 112345678999999999999999999999999987
Q ss_pred HHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 000191 966 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKA 1045 (1888)
Q Consensus 966 Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekA 1045 (1888)
... .+......++.+++.++...|++++|+.++++++.+.... .+....+.++.++|.+|...|+|++|+.+++++
T Consensus 86 ~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 161 (434)
T 4b4t_Q 86 MQF--AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE--KRVFLKHSLSIKLATLHYQKKQYKDSLALINDL 161 (434)
T ss_dssp HTS--CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS--SCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHc--cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence 653 1223445677889999999999999999999999988774 345677899999999999999999999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000191 1046 LKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARN 1125 (1888)
Q Consensus 1046 Lei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~ 1125 (1888)
+...... .+....+.++..++.+|..+|+|++|..++++++.+......+ .
T Consensus 162 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~------------------------- 212 (434)
T 4b4t_Q 162 LREFKKL--DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCP--T------------------------- 212 (434)
T ss_dssp HHHHTTS--SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--H-------------------------
T ss_pred HHHHHhc--ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCc--h-------------------------
Confidence 9887654 4567788999999999999999999999999998776443111 0
Q ss_pred cCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1126 GTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1126 ~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
.....++..+|.++...|+|.+|..+|.+++.......
T Consensus 213 --------------~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~ 250 (434)
T 4b4t_Q 213 --------------QTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLT 250 (434)
T ss_dssp --------------HHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTT
T ss_pred --------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Confidence 01234577788888889999999999999999887765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-12 Score=146.55 Aligned_cols=186 Identities=17% Similarity=0.149 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..++.+|.++...|++++|+.+|++++.+ ++....++..+|.+|..+|++++|+.++++++.+
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------- 137 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDR--------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-------- 137 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--------
Confidence 556788899999999999999999999987 3445578999999999999999999999999875
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHH
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN---VHVALRYLHKALKCN 1049 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~---yeeAle~LekALei~ 1049 (1888)
++....++.++|..++..+++++|+.+|++++.+ .|....++.++|.++..+|+ +++|+.+|++++++.
T Consensus 138 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 209 (272)
T 3u4t_A 138 TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--------KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC 209 (272)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence 4666788999995555667999999999999986 24446778899999999999 999999999999998
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 000191 1050 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAA 1107 (1888)
Q Consensus 1050 ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~ 1107 (1888)
.............++..+|.+|...|++++|+.++++++++ .++++.......
T Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~a~~~l~ 262 (272)
T 3u4t_A 210 APGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL-----DPTNKKAIDGLK 262 (272)
T ss_dssp GGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHC
T ss_pred hcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CccHHHHHHHhh
Confidence 65422222345688999999999999999999999999965 577776554443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=5.9e-12 Score=153.81 Aligned_cols=179 Identities=11% Similarity=0.046 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 893 GRQLLESSKTALDKGK-LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd-~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
...++.+|.++...|+ +++|+.+|++++.+ +|....+|+++|.+|..+|++++|+.+|++||.+
T Consensus 131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l------- 195 (382)
T 2h6f_A 131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ------- 195 (382)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Confidence 5567888999999997 99999999999987 5667789999999999999999999999999997
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCCHHHH-----HHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG-LGNVHVA-----LRYLHKA 1045 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~-lG~yeeA-----le~LekA 1045 (1888)
+|....+|+++|.++..+|++++|+.+|++++.+ +|....+++++|.+|.. .|.+++| +.+|++|
T Consensus 196 -dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--------~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~A 266 (382)
T 2h6f_A 196 -DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEM 266 (382)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHH
T ss_pred -CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence 5777899999999999999999999999999986 46667889999999999 5555888 5899999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 000191 1046 LKCNQRLLGPDHIQTAASYHAIAIALSLME--AYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL 1109 (1888)
Q Consensus 1046 Lei~ek~~G~d~~~tA~al~nLA~ay~~lG--dydeAle~lqkALeI~kk~LG~dh~~tl~a~~~L 1109 (1888)
+++. +....++++++.+|...| ++++|+..++++ ...+++......+..+
T Consensus 267 l~l~--------P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~------~~~p~~~~al~~La~~ 318 (382)
T 2h6f_A 267 IKLV--------PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL------QPSHSSPYLIAFLVDI 318 (382)
T ss_dssp HHHS--------TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH------TTTCCCHHHHHHHHHH
T ss_pred HHHC--------CCCHHHHHHHHHHHHccCccchHHHHHHHHHh------ccCCCCHHHHHHHHHH
Confidence 9873 344568899999999988 689998877653 3456666554444433
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.41 E-value=9.4e-12 Score=137.77 Aligned_cols=165 Identities=15% Similarity=0.142 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH----------------HHHHHHhcCCHHHHHH
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSL----------------LAVVLYHTGDFNQATI 956 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~----------------LA~ly~~lGdyeeAl~ 956 (1888)
+..++..|..++..|++++|+.+|++++.+ +|....++.. +|.+|..+|++++|+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 467788999999999999999999999987 5666677777 9999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH-
Q 000191 957 YQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNV- 1035 (1888)
Q Consensus 957 ~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~y- 1035 (1888)
+|++++.+ +|....++.+||.+|..+|++++|+.+|++++.+ +|....+++++|.+|...|+.
T Consensus 76 ~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~ 139 (208)
T 3urz_A 76 FYKELLQK--------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--------EADNLAANIFLGNYYYLTAEQE 139 (208)
T ss_dssp HHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHhHHH
Confidence 99999997 4667889999999999999999999999999986 355667899999999776543
Q ss_pred -HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1036 -HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1036 -eeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
..+...+++++ .+.. ....++++|.++...|+|++|+.+|++|+++
T Consensus 140 ~~~~~~~~~~~~-------~~~~--~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 140 KKKLETDYKKLS-------SPTK--MQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHC----------CCCH--HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHh-------CCCc--hhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34444444432 2222 2345777899999999999999999999965
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.8e-12 Score=143.68 Aligned_cols=207 Identities=13% Similarity=0.063 Sum_probs=157.8
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000191 931 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010 (1888)
Q Consensus 931 hpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki 1010 (1888)
.+..+..++.+|..++..|++++|+.+|++++.. .++++....+++.||.+|+.+|++++|+.+|++++.+
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~---- 81 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY-----GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI---- 81 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG-----CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH----
Confidence 4455778999999999999999999999999875 3556666899999999999999999999999999986
Q ss_pred cCCCChhHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH--------------HHHH
Q 000191 1011 CGPSHPNTAATYINVAMMEEG--------LGNVHVALRYLHKALKCNQRLLGPDHIQTAASY--------------HAIA 1068 (1888)
Q Consensus 1011 ~G~dhP~~a~a~~NLA~iy~~--------lG~yeeAle~LekALei~ek~~G~d~~~tA~al--------------~nLA 1068 (1888)
.++++....+++++|.+|.. +|++++|+.+|+++++.. +++.....++ +.+|
T Consensus 82 -~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~la 155 (261)
T 3qky_A 82 -YQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-----PNHELVDDATQKIRELRAKLARKQYEAA 155 (261)
T ss_dssp -CTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-----cCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677888999999999999 999999999999999875 4444444444 8899
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH------------HHHHHHHHHHhcCCCCchhhhh
Q 000191 1069 IALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES------------KAFEQQEAARNGTRKPDASIAS 1136 (1888)
Q Consensus 1069 ~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~q------------ka~e~AeAl~~~~~~~~~~~as 1136 (1888)
.+|..+|++++|+.+|+++++.. +++.....++.+++.... +.++.+........ ...
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~-----~~~ 225 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLL-----QIF 225 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH-----HHC
T ss_pred HHHHHccCHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHH-----HHC
Confidence 99999999999999999998653 554444555555554443 33344433332211 112
Q ss_pred cCCccHHHHHHHHHHHHHHcCChHHH
Q 000191 1137 KGHLSVSDLLDYINPSHDTKGRNVST 1162 (1888)
Q Consensus 1137 ~~~~svaelL~~Lg~~y~~qGdyeEA 1162 (1888)
+++......+..++.++...++++++
T Consensus 226 p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 226 PDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp TTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 33445566777777777776666554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-11 Score=137.79 Aligned_cols=175 Identities=14% Similarity=0.065 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...++.+|..+...|++++|+.+|++++.. .+....++..+|.+|..+|++++|+.++++++. ...
T Consensus 71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~ 136 (252)
T 2ho1_A 71 ADAHAALAVVFQTEMEPKLADEEYRKALAS--------DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ------DTL 136 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------CTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh------Ccc
Confidence 456788899999999999999999999987 344567899999999999999999999999987 234
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
.+....++.++|.+|...|++++|+.+|++++.+. |....++..+|.+|..+|++++|+.+|+++++..
T Consensus 137 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--- 205 (252)
T 2ho1_A 137 YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--------RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG--- 205 (252)
T ss_dssp CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS---
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence 57778899999999999999999999999999852 3345678899999999999999999999988642
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHH
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRT 1102 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~t 1102 (1888)
+. ...++..++.+|...|++++|..++++++++ .++++..
T Consensus 206 --~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~ 245 (252)
T 2ho1_A 206 --GQ---NARSLLLGIRLAKVFEDRDTAASYGLQLKRL-----YPGSLEY 245 (252)
T ss_dssp --CC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTSHHH
T ss_pred --cC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-----CCCCHHH
Confidence 22 3456788899999999999999999998865 4665543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.9e-11 Score=146.19 Aligned_cols=202 Identities=10% Similarity=0.037 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...+..+|..|..+|++++|++++.+++.+..++ ........++..++.++...|++++|+.++++++.+.... .+
T Consensus 55 ~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~ 130 (434)
T 4b4t_Q 55 ETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF--AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE--KR 130 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS--CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS--SC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--Cc
Confidence 4557889999999999999999999999987664 2333445678889999999999999999999999998774 35
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
....+.++.+||.+|..+|+|++|+.++++++...... .+++..+.++.++|.+|..+|+|++|..+|++++.+....
T Consensus 131 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 208 (434)
T 4b4t_Q 131 VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL--DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI 208 (434)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS--SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC
Confidence 56678899999999999999999999999999876553 4578889999999999999999999999999999988665
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHH
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLR 1101 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~ 1101 (1888)
. ..+...+..+..+|.++...|+|.+|..++.+++..+.......+..
T Consensus 209 ~-~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~ 256 (434)
T 4b4t_Q 209 Y-CPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSYE 256 (434)
T ss_dssp C-CCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHH
T ss_pred C-CchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHH
Confidence 2 33445678889999999999999999999999999998776665543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-11 Score=129.05 Aligned_cols=172 Identities=14% Similarity=0.185 Sum_probs=144.6
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000191 932 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 1011 (1888)
Q Consensus 932 pe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~ 1011 (1888)
...+.++..+|.++...|++++|+.++++++.. .+....++..+|.+|...|++++|+.++++++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----- 71 (186)
T 3as5_A 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA--------DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD----- 71 (186)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----
Confidence 345678899999999999999999999988764 3445788999999999999999999999999986
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000191 1012 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1012 G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
.|....++.++|.+|...|++++|+.+|++++... +. ...++..+|.+|...|++++|+.++++++.+.
T Consensus 72 ---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 140 (186)
T 3as5_A 72 ---APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-----PI---NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR 140 (186)
T ss_dssp ---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----cH---hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC
Confidence 24446778999999999999999999999999873 22 34678889999999999999999998887431
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000191 1092 RAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 1171 (1888)
Q Consensus 1092 kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALe 1171 (1888)
+++ ..++..+|.+|..+|++++|+.+++++++
T Consensus 141 -----~~~-------------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 141 -----PNE-------------------------------------------GKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp -----TTC-------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----ccc-------------------------------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111 23568889999999999999999999999
Q ss_pred Hhcc
Q 000191 1172 VKGN 1175 (1888)
Q Consensus 1172 L~dS 1175 (1888)
+...
T Consensus 173 ~~~~ 176 (186)
T 3as5_A 173 LDEG 176 (186)
T ss_dssp HHHC
T ss_pred cCCC
Confidence 8754
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.5e-11 Score=128.86 Aligned_cols=177 Identities=15% Similarity=0.011 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhcCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT-GDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~l-GdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
...++.+|..+...|++++|+.+|++++.. .+....++..+|.+|..+ |++++|+.++++++. ..
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~------~~ 107 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSI--------KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA------DP 107 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT------ST
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc------Cc
Confidence 446777899999999999999999999986 344567899999999999 999999999999987 13
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
..+....++.++|.+|...|++++|+.+|++++.. .|....++.++|.+|...|++++|+.+|+++++..
T Consensus 108 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-- 177 (225)
T 2vq2_A 108 TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--------QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV-- 177 (225)
T ss_dssp TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--
T ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 45667889999999999999999999999999875 23345678899999999999999999999999875
Q ss_pred hcCC-CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 000191 1052 LLGP-DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQD 1104 (1888)
Q Consensus 1052 ~~G~-d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~ 1104 (1888)
+ .+ ...+..++.++...|++++|..+++.+... .++++....
T Consensus 178 ---~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~~~~ 220 (225)
T 2vq2_A 178 ---EVLQ---ADDLLLGWKIAKALGNAQAAYEYEAQLQAN-----FPYSEELQT 220 (225)
T ss_dssp ---CSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHH
T ss_pred ---CCCC---HHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-----CCCCHHHHH
Confidence 3 33 334667888999999999999988877643 466665443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-12 Score=137.84 Aligned_cols=146 Identities=16% Similarity=0.169 Sum_probs=121.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 000191 899 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK 978 (1888)
Q Consensus 899 lG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ 978 (1888)
+|.++..+|++++|+..+++++.. .|+....++.||.+|+.+|+|++|+.+|++++.+ +|....
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~~ 66 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDPK 66 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHH
Confidence 567777889999999999988754 5667778899999999999999999999999997 566788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHHHHHhcCCCc
Q 000191 979 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRY-LHKALKCNQRLLGPDH 1057 (1888)
Q Consensus 979 ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~-LekALei~ek~~G~d~ 1057 (1888)
+|.+||.+|..+|++++|+.+|++++++ .|....++.++|.+|..+|++++|... +++|+++. +++
T Consensus 67 a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-----P~~ 133 (150)
T 4ga2_A 67 AHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-----PGS 133 (150)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-----TTC
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-----cCC
Confidence 9999999999999999999999999986 355567899999999999999887665 69999874 444
Q ss_pred HHHHHHHHHHHHHHHHcCC
Q 000191 1058 IQTAASYHAIAIALSLMEA 1076 (1888)
Q Consensus 1058 ~~tA~al~nLA~ay~~lGd 1076 (1888)
..++..++.++...|+
T Consensus 134 ---~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 134 ---PAVYKLKEQLLDCEGE 149 (150)
T ss_dssp ---HHHHHHHHHHHHTCCC
T ss_pred ---HHHHHHHHHHHHHhCc
Confidence 4556777888887775
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=5.6e-11 Score=133.48 Aligned_cols=166 Identities=14% Similarity=0.032 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000191 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 969 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~l 969 (1888)
...+..++.+|..++..|++++|+.+|++++.+ +|....++..+|.+|..+|++++|+.++++++.+
T Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----- 106 (275)
T 1xnf_A 40 DERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL----- 106 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----
Confidence 345788899999999999999999999999987 3455678999999999999999999999999987
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 970 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
.|....++.++|.+|..+|++++|+.+|++++.+ .++++. ....++ ++...|++++|+.+|++++...
T Consensus 107 ---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~---~~~~~~-~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 107 ---DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-----DPNDPF---RSLWLY-LAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp ---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHH---HHHHHH-HHHHHHCHHHHHHHHHHHHHHS
T ss_pred ---CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCChH---HHHHHH-HHHHhcCHHHHHHHHHHHHhcC
Confidence 3445678999999999999999999999999985 344432 222233 3355689999999998877642
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000191 1050 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1050 ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALe 1089 (1888)
+... ....++.++...+++++|+..+++++.
T Consensus 175 -----~~~~----~~~~~~~~~~~~~~~~~a~~~~~~~~~ 205 (275)
T 1xnf_A 175 -----DKEQ----WGWNIVEFYLGNISEQTLMERLKADAT 205 (275)
T ss_dssp -----CCCS----THHHHHHHHTTSSCHHHHHHHHHHHCC
T ss_pred -----Ccch----HHHHHHHHHHHhcCHHHHHHHHHHHhc
Confidence 1111 012234444445555555555555443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-10 Score=130.38 Aligned_cols=178 Identities=18% Similarity=0.142 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 1014 (1888)
Q Consensus 935 A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~d 1014 (1888)
+..++.+|..++..|++++|+..|++++.. .++++....+++++|.+|+.+|++++|+..|++++.. .++
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-----~P~ 73 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPT 73 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcC
Confidence 457899999999999999999999999986 3455666789999999999999999999999999985 466
Q ss_pred ChhHHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHH--------------
Q 000191 1015 HPNTAATYINVAMMEEG------------------LGNVHVALRYLHKALKCNQRLLGPDHIQTAA-------------- 1062 (1888)
Q Consensus 1015 hP~~a~a~~NLA~iy~~------------------lG~yeeAle~LekALei~ek~~G~d~~~tA~-------------- 1062 (1888)
++....+++.+|.+|.. +|++++|+..|+++++.. +++.....
T Consensus 74 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----P~~~~a~~a~~~l~~~~~~~~~ 148 (225)
T 2yhc_A 74 HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-----PNSQYTTDATKRLVFLKDRLAK 148 (225)
T ss_dssp CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-----TTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHHHHH
Confidence 77777788889998876 678999999999988764 34433222
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccH
Q 000191 1063 SYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSV 1142 (1888)
Q Consensus 1063 al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~sv 1142 (1888)
....+|.+|...|++++|+..|+++++.+ ++++ ..
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~----------------------------------------~~ 183 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQ----------------------------------------AT 183 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSH----------------------------------------HH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCC----------------------------------------cc
Confidence 22567777888888888888887776542 2221 22
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1143 SDLLDYINPSHDTKGRNVSTLKRKTYVAKV 1172 (1888)
Q Consensus 1143 aelL~~Lg~~y~~qGdyeEAleyyeKALeL 1172 (1888)
.+++..+|.+|..+|++++|+.+++++...
T Consensus 184 ~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 184 RDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 356788999999999999999999877654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.30 E-value=5.9e-12 Score=164.47 Aligned_cols=161 Identities=14% Similarity=-0.026 Sum_probs=137.0
Q ss_pred HHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 000191 904 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 983 (1888)
Q Consensus 904 l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nL 983 (1888)
+..|++++|+..|++++.......+..+|..+.++..+|.+|..+|++++|+..|++++.+ +|....+++++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~l 473 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--------VGWRWRLVWYR 473 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCCCHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------CcchHHHHHHH
Confidence 6789999999999999832222223346777789999999999999999999999999987 35567899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 000191 984 AVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAAS 1063 (1888)
Q Consensus 984 A~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~a 1063 (1888)
|.+|..+|++++|+.+|++|+.+ .|....+++++|.+|..+|++++ +.+|++|+++. +....+
T Consensus 474 g~~~~~~g~~~~A~~~~~~al~l--------~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--------P~~~~a 536 (681)
T 2pzi_A 474 AVAELLTGDYDSATKHFTEVLDT--------FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--------DGVISA 536 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--------TTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--------CchHHH
Confidence 99999999999999999999986 34456778999999999999999 99999999873 344568
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 000191 1064 YHAIAIALSLMEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1064 l~nLA~ay~~lGdydeAle~lqkALe 1089 (1888)
++++|.+|..+|++++|+.+|++|++
T Consensus 537 ~~~lg~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 537 AFGLARARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhcc
Confidence 89999999999999999999998874
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.30 E-value=9.8e-11 Score=137.14 Aligned_cols=165 Identities=9% Similarity=0.013 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...+..++..+...|++++|+..+++.+.. ..+|....++..+|.+|...|++++|+.++++
T Consensus 65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------------ 126 (291)
T 3mkr_A 65 LQAVRMFAEYLASHSRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------------ 126 (291)
T ss_dssp HHHHHHHHHHHHCSTTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------------
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------------
Confidence 445555667777777777777777766542 12344556677777777777777777777665
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
+....++..+|.+|..+|++++|+.+|++++.+ .+++.. ......+..++...|++++|+.+|+++++..
T Consensus 127 -~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-----~p~~~~-~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--- 196 (291)
T 3mkr_A 127 -GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-----DEDATL-TQLATAWVSLAAGGEKLQDAYYIFQEMADKC--- 196 (291)
T ss_dssp -CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS---
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CcCcHH-HHHHHHHHHHHhCchHHHHHHHHHHHHHHhC---
Confidence 233456777777777777777777777777764 222221 1111111123334577777777777777652
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
+ ....+++++|.+|..+|++++|+.++++++.+
T Consensus 197 --p---~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 197 --S---PTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp --C---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --C---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 23456777777777777777777777777743
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-10 Score=132.27 Aligned_cols=190 Identities=17% Similarity=0.105 Sum_probs=148.9
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHH
Q 000191 933 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR----LQHTELALKYVKRALYLLH 1008 (1888)
Q Consensus 933 e~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~----lGdyeeALey~~kALeL~~ 1008 (1888)
..+.++..+|.+|...|++++|+.+|++++. +....++.+||.+|.. .+++++|+.+|++|+.+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-- 71 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD----------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-- 71 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC--
Confidence 3456899999999999999999999999987 1234688999999999 99999999999999874
Q ss_pred HhcCCCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH----cCChHHH
Q 000191 1009 LTCGPSHPNTAATYINVAMMEEG----LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL----MEAYPLS 1080 (1888)
Q Consensus 1009 ki~G~dhP~~a~a~~NLA~iy~~----lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~----lGdydeA 1080 (1888)
+ ...++.++|.+|.. .+++++|+.+|++|++. + ...++++||.+|.. .+++++|
T Consensus 72 ---~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-----~-----~~~a~~~lg~~~~~~~~~~~~~~~A 133 (273)
T 1ouv_A 72 ---N-----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-----K-----YAEGCASLGGIYHDGKVVTRDFKKA 133 (273)
T ss_dssp ---T-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----T-----CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred ---C-----CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-----C-----CccHHHHHHHHHHcCCCcccCHHHH
Confidence 1 24678899999999 99999999999999875 1 35678899999999 9999999
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH------HHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHH
Q 000191 1081 VQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES------KAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHD 1154 (1888)
Q Consensus 1081 le~lqkALeI~kk~LG~dh~~tl~a~~~La~L~q------ka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~ 1154 (1888)
+.++++|++. + +.. +...++.+.. +..+.+......... . .....+..+|.+|.
T Consensus 134 ~~~~~~a~~~-----~--~~~---a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-------~---~~~~a~~~lg~~~~ 193 (273)
T 1ouv_A 134 VEYFTKACDL-----N--DGD---GCTILGSLYDAGRGTPKDLKKALASYDKACD-------L---KDSPGCFNAGNMYH 193 (273)
T ss_dssp HHHHHHHHHT-----T--CHH---HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-------T---TCHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-----C--cHH---HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-------C---CCHHHHHHHHHHHH
Confidence 9999999863 2 332 3334443332 344444333322110 1 11357899999999
Q ss_pred H----cCChHHHHHHHHHHHHH
Q 000191 1155 T----KGRNVSTLKRKTYVAKV 1172 (1888)
Q Consensus 1155 ~----qGdyeEAleyyeKALeL 1172 (1888)
. .+++++|+.+|++++++
T Consensus 194 ~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 194 HGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp HTCSSCCCHHHHHHHHHHHHHT
T ss_pred cCCCCCccHHHHHHHHHHHHhC
Confidence 9 99999999999999976
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=5.1e-11 Score=138.89 Aligned_cols=169 Identities=12% Similarity=0.031 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
....++.+|..++..|++++|+.+|++++.+ +|....++..||.+|..+|++++|+.++++++..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~------- 180 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQL--------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ------- 180 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-------
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-------
Confidence 3566788999999999999999999999987 5666789999999999999999999999998764
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
+|+.......++..+...++.++|+..|++++.+ +|+...+++++|.+|...|++++|+..|+++++..
T Consensus 181 -~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-- 249 (287)
T 3qou_A 181 -DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLRXD-- 249 (287)
T ss_dssp -GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred -hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--
Confidence 2344566777888888999999999999999986 46667789999999999999999999999999873
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1052 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
+++ ....++.+|+.+|..+|+.++|+..|++++..
T Consensus 250 ---p~~-~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 250 ---LTA-ADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp ---TTG-GGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ---ccc-ccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 221 22577889999999999999999999999864
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.26 E-value=6.7e-11 Score=154.57 Aligned_cols=169 Identities=16% Similarity=0.066 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..++.+|..++.+|++++|+..|++++++ +|..+.+++++|.+|..+|++++|+..|++|+.+
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-------- 496 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAER--------VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT-------- 496 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 346778899999999999999999999987 4556789999999999999999999999999997
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
.|....++++||.+|..+|++++ +.+|++|+++ +|....+++++|.+|..+|++++|+.+|++|+++
T Consensus 497 ~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---- 563 (681)
T 2pzi_A 497 FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--------NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPT---- 563 (681)
T ss_dssp STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT----
T ss_pred CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--------CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc----
Confidence 45667889999999999999999 9999999986 3556678999999999999999999999999875
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHHHh
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLS-VQHEQTTLQILRAK 1094 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeA-le~lqkALeI~kk~ 1094 (1888)
.+....+++++|.+|...++.++| ...+++|++.+...
T Consensus 564 ----~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 564 ----SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp ----STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred ----CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 355678899999999887876666 67788888777654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.6e-10 Score=135.33 Aligned_cols=224 Identities=13% Similarity=0.057 Sum_probs=155.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 000191 901 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMT-AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS 979 (1888)
Q Consensus 901 ~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~-A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~a 979 (1888)
+.++..|+|.+|+..+++... ..|.. ..+...++++|..+|++++|+..++. . .+....+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~--------~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----------~-~~~~~~a 67 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKP--------SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----------S-SAPELQA 67 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCC--------CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----------T-SCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccc--------CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----------c-CChhHHH
Confidence 556688999999988876432 24444 35677888999999999988875533 1 2345678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHH
Q 000191 980 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ 1059 (1888)
Q Consensus 980 y~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~ 1059 (1888)
+..+|.++...+++++|++.+++++.. ..+|+...++..+|.+|...|++++|+.+|++ +.
T Consensus 68 ~~~la~~~~~~~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----------~~--- 128 (291)
T 3mkr_A 68 VRMFAEYLASHSRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----------GD--- 128 (291)
T ss_dssp HHHHHHHHHCSTTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----------CC---
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----------CC---
Confidence 888899999889999999888887652 12455566788889999999999999988876 22
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCCchhhhhcC
Q 000191 1060 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFE-SKAFEQQEAARNGTRKPDASIASKG 1138 (1888)
Q Consensus 1060 tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~-qka~e~AeAl~~~~~~~~~~~as~~ 1138 (1888)
...++..+|.+|..+|++++|+..+++++++ .+++........|+.... .+.++.+......... .
T Consensus 129 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-----~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~-------~- 195 (291)
T 3mkr_A 129 SLECMAMTVQILLKLDRLDLARKELKKMQDQ-----DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD-------K- 195 (291)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH-------H-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH-------h-
Confidence 3456778899999999999999999888765 466654433333333222 1334444333221110 0
Q ss_pred CccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000191 1139 HLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1139 ~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
.+....+++.+|.+|..+|++++|..+|++++++...
T Consensus 196 ~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 196 CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 1123457888999999999999999999998887543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=4.6e-11 Score=151.72 Aligned_cols=153 Identities=14% Similarity=0.088 Sum_probs=119.8
Q ss_pred cCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 000191 906 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 985 (1888)
Q Consensus 906 qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ 985 (1888)
.|++++|+.+|++++++ +|..+.++..+|.+|..+|++++|+.+|++|+.+ +|....++.+||.
T Consensus 2 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~ 65 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--------HPGHPEAVARLGR 65 (568)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------STTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 47899999999999876 4556789999999999999999999999999986 4566789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 000191 986 FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYH 1065 (1888)
Q Consensus 986 ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~ 1065 (1888)
+|..+|++++|+.+|++++.+ +|....++.++|.+|..+|++++|+.+|++++++. + ....++.
T Consensus 66 ~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p---~~~~~~~ 129 (568)
T 2vsy_A 66 VRWTQQRHAEAAVLLQQASDA--------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-----P---EEPYITA 129 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T---TCHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C---CCHHHHH
Confidence 999999999999999999986 34456789999999999999999999999999873 2 3356788
Q ss_pred HHHHHHHHc---CChHHHHHHHHHHHHH
Q 000191 1066 AIAIALSLM---EAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1066 nLA~ay~~l---GdydeAle~lqkALeI 1090 (1888)
++|.+|..+ |++++|+.+++++++.
T Consensus 130 ~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 130 QLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999999999 9999999999999865
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.7e-11 Score=129.16 Aligned_cols=139 Identities=13% Similarity=0.052 Sum_probs=113.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 000191 940 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTA 1019 (1888)
Q Consensus 940 ~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a 1019 (1888)
.||.++..+|++++|+..+++++.. .|+....+++||.+|+.+|+|++|+.+|++++.+ +|...
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~--------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~ 65 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPS--------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDP 65 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCS--------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhccc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Confidence 5889999999999999999998764 4666778899999999999999999999999986 35567
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHH-HHHHHHHHHHhcCCC
Q 000191 1020 ATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQH-EQTTLQILRAKLGPD 1098 (1888)
Q Consensus 1020 ~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~-lqkALeI~kk~LG~d 1098 (1888)
.++.++|.+|..+|++++|+.+|++++++. +....+++++|.+|..+|++++|... +++|+++ .|+
T Consensus 66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l-----~P~ 132 (150)
T 4ga2_A 66 KAHRFLGLLYELEENTDKAVECYRRSVELN--------PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL-----FPG 132 (150)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH-----STT
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-----CcC
Confidence 889999999999999999999999999873 34456889999999999999877665 5888865 578
Q ss_pred CHHHHHHHH
Q 000191 1099 DLRTQDAAA 1107 (1888)
Q Consensus 1099 h~~tl~a~~ 1107 (1888)
++.......
T Consensus 133 ~~~~~~l~~ 141 (150)
T 4ga2_A 133 SPAVYKLKE 141 (150)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 876544433
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.6e-10 Score=139.00 Aligned_cols=158 Identities=16% Similarity=0.128 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 000191 892 DGRQLLESSKTALD----KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH----TGDFNQATIYQQKALD 963 (1888)
Q Consensus 892 ~A~~LlelG~~~l~----qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~----lGdyeeAl~~~eKAL~ 963 (1888)
++..++.+|..|+. .+++++|+.+|+++++. . .+.+++.||.+|.. .+++++|+.+|++|+.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 107 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-------G---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL 107 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 35667778888888 88899999999888753 1 24578888888888 8888899888888875
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCH
Q 000191 964 INERELGLDHPDTMKSYGDLAVFYYR----LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGNV 1035 (1888)
Q Consensus 964 I~Er~lG~Dhp~ta~ay~nLA~ly~~----lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~----lG~y 1035 (1888)
. ....++++||.+|.. .+++++|+.+|++|... ++ ..++.+||.+|.. .+++
T Consensus 108 ~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~d~ 167 (490)
T 2xm6_A 108 K----------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-------GR---DSGQQSMGDAYFEGDGVTRDY 167 (490)
T ss_dssp T----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCH
T ss_pred C----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCCCCH
Confidence 2 134677788888888 78888888888888652 22 4567788888887 7788
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHH
Q 000191 1036 HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL----MEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1036 eeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~----lGdydeAle~lqkALe 1089 (1888)
++|+.+|+++++. | ...++++||.+|.. .+++++|+.+|+++.+
T Consensus 168 ~~A~~~~~~a~~~-----~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 215 (490)
T 2xm6_A 168 VMAREWYSKAAEQ-----G-----NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT 215 (490)
T ss_dssp HHHHHHHHHHHHT-----T-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-----C-----CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence 8888888888753 1 24567778888887 7888888888887764
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-10 Score=119.84 Aligned_cols=117 Identities=17% Similarity=0.177 Sum_probs=102.5
Q ss_pred CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000191 930 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 1009 (1888)
Q Consensus 930 dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~k 1009 (1888)
.+|+.+.++.++|..|+.+|+|++|+.+|++|+.+ +|....+|.++|.+|..+|++++|+.+|++|+.+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--- 76 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL--- 76 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---
Confidence 47899999999999999999999999999999987 4667889999999999999999999999999986
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 000191 1010 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIA 1070 (1888)
Q Consensus 1010 i~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~a 1070 (1888)
+|....++.++|.+|..+|++++|+.+|++++++. +++ ..++..|+.+
T Consensus 77 -----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~-----P~~---~~a~~~l~~~ 124 (126)
T 4gco_A 77 -----DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVD-----PSN---EEAREGVRNC 124 (126)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHH
T ss_pred -----hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----cCC---HHHHHHHHHh
Confidence 35556789999999999999999999999999973 333 4456666655
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.22 E-value=5e-11 Score=127.91 Aligned_cols=166 Identities=17% Similarity=0.072 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 973 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh 973 (1888)
..++.+|..++..|++++|+.+|++++.. +|....++..+|.+|..+|++++|+.++++++... + +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-----p-~ 72 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDE--------LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY-----Q-D 72 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHH--------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-----C-C
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-----C-C
Confidence 34678889999999999999999999987 46667899999999999999999999999987641 2 2
Q ss_pred hhhHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 974 PDTMKSYGDLAVFY-YRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 974 p~ta~ay~nLA~ly-~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
+ ..+..++.+. ...++..+|+.+|++++.+ +|....+++++|.+|...|++++|+.+|+++++..
T Consensus 73 ~---~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--- 138 (176)
T 2r5s_A 73 N---SYKSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNILKVN--- 138 (176)
T ss_dssp H---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred h---HHHHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC---
Confidence 3 2233334332 2334445689999999885 35556788999999999999999999999998763
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
++. ....++.++|.+|..+|++++|+.+|++++..
T Consensus 139 --p~~-~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 139 --LGA-QDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp --TTT-TTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred --ccc-ChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 211 12357888999999999999999999998753
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.7e-10 Score=115.76 Aligned_cols=108 Identities=18% Similarity=0.264 Sum_probs=97.9
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000191 932 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 1011 (1888)
Q Consensus 932 pe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~ 1011 (1888)
.+.+.++.+||.+|+.+|+|++|+.+|++|+.+ +|....+|.++|.+|..+|+|++|+.+|++|+.+....
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~- 75 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET- 75 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-
Confidence 456789999999999999999999999999987 46678899999999999999999999999999987653
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000191 1012 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 1012 G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
...+...+.++.++|.+|..+|++++|+.+|+++|..
T Consensus 76 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4456778889999999999999999999999999986
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.3e-09 Score=133.57 Aligned_cols=157 Identities=13% Similarity=0.062 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHH
Q 000191 893 GRQLLESSKTALD----KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH----TGDFNQATIYQQKALDI 964 (1888)
Q Consensus 893 A~~LlelG~~~l~----qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~----lGdyeeAl~~~eKAL~I 964 (1888)
+..++.+|..|.. .+++++|+.+|++|... . ...++..||.+|.. .+++++|+.+|++|+..
T Consensus 75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 144 (490)
T 2xm6_A 75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-------G---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ 144 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 5677888999998 89999999999998753 1 24578889999988 88999999999998763
Q ss_pred HHHhcCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCHH
Q 000191 965 NERELGLDHPDTMKSYGDLAVFYYR----LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGNVH 1036 (1888)
Q Consensus 965 ~Er~lG~Dhp~ta~ay~nLA~ly~~----lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~----lG~ye 1036 (1888)
....++.+||.+|.. .+++++|+.+|+++++. .+ ..++.+||.+|.. .++++
T Consensus 145 ----------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~ 204 (490)
T 2xm6_A 145 ----------GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-------GN---VWSCNQLGYMYSRGLGVERNDA 204 (490)
T ss_dssp ----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHH
T ss_pred ----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHhcCCCCCcCHH
Confidence 235678889999988 78899999999998763 12 4567888998888 88899
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHH
Q 000191 1037 VALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL----MEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1037 eAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~----lGdydeAle~lqkALe 1089 (1888)
+|+.+|+++++. | ...+++.||.+|.. .+++++|+.+++++.+
T Consensus 205 ~A~~~~~~a~~~-----~-----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 251 (490)
T 2xm6_A 205 ISAQWYRKSATS-----G-----DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE 251 (490)
T ss_dssp HHHHHHHHHHHT-----T-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHC-----C-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 999999888753 1 23467778888876 7788888888877763
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.5e-10 Score=117.14 Aligned_cols=116 Identities=16% Similarity=0.116 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000191 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 969 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~l 969 (1888)
...+..+.++|..++.+|+|++|+.+|++|+.+ +|..+.+|.++|.+|..+|++++|+..+++|+.+
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----- 76 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL----- 76 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh-----
Confidence 456788999999999999999999999999987 5666789999999999999999999999999987
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 000191 970 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMME 1029 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy 1029 (1888)
+|....+|.++|.+|..+|++++|+.+|++++++ +|....++.+|+.++
T Consensus 77 ---~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 77 ---DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV--------DPSNEEAREGVRNCL 125 (126)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHC
T ss_pred ---hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CcCCHHHHHHHHHhc
Confidence 4667789999999999999999999999999986 344455666777653
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.19 E-value=4.2e-11 Score=143.07 Aligned_cols=162 Identities=16% Similarity=0.129 Sum_probs=130.4
Q ss_pred cCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC-------ChhhHH
Q 000191 906 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD-------HPDTMK 978 (1888)
Q Consensus 906 qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D-------hp~ta~ 978 (1888)
.+++++|+.+|++++.. .+..+.++..+|.+|+.+|+|++|+.+|++|+.+.......+ .+..+.
T Consensus 126 L~~~~~A~~~~~~a~~~--------~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~ 197 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEE--------KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA 197 (336)
T ss_dssp EEEEECCCCGGGCCHHH--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHH--------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHH
Confidence 45677777777777665 466788999999999999999999999999999843210000 112368
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcH
Q 000191 979 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI 1058 (1888)
Q Consensus 979 ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~ 1058 (1888)
+|.+||.+|..+|++++|+.+|++|+.+ +|....+++++|.+|..+|++++|+.+|++|+++. +
T Consensus 198 ~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-----P--- 261 (336)
T 1p5q_A 198 SHLNLAMCHLKLQAFSAAIESCNKALEL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-----P--- 261 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----S---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----C---
Confidence 9999999999999999999999999986 35567889999999999999999999999999873 3
Q ss_pred HHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHH
Q 000191 1059 QTAASYHAIAIALSLMEAYPLS-VQHEQTTLQIL 1091 (1888)
Q Consensus 1059 ~tA~al~nLA~ay~~lGdydeA-le~lqkALeI~ 1091 (1888)
....++.+|+.++..+|++++| ...|++.+..+
T Consensus 262 ~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 262 NNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3356788999999999999988 44666655443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-09 Score=121.24 Aligned_cols=170 Identities=11% Similarity=0.005 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH----------------HHHHHHHCCCHHHHHH
Q 000191 977 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN----------------VAMMEEGLGNVHVALR 1040 (1888)
Q Consensus 977 a~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~N----------------LA~iy~~lG~yeeAle 1040 (1888)
+..+...|..++..|++++|+.+|++++.+ +|....++++ +|.+|..+|++++|+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 456778999999999999999999999986 4666677777 9999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 000191 1041 YLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQ 1120 (1888)
Q Consensus 1041 ~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~A 1120 (1888)
+|++++++. |....+++++|.+|..+|++++|+.+|++++++ .+++......+..+.+. .+..+.+
T Consensus 76 ~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~lg~~~~~-~~~~~~~ 141 (208)
T 3urz_A 76 FYKELLQKA--------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL-----EADNLAANIFLGNYYYL-TAEQEKK 141 (208)
T ss_dssp HHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHH-HhHHHHH
Confidence 999999873 344678899999999999999999999999965 67777655544443222 2222222
Q ss_pred HHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000191 1121 EAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1121 eAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
.+......... .......++.+|..+..+|+|++|+.+|++++++...
T Consensus 142 ~~~~~~~~~~~-------~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 142 KLETDYKKLSS-------PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHC---C-------CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHhC-------CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 22211111111 1122345677899999999999999999999998765
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.17 E-value=6.9e-10 Score=129.86 Aligned_cols=199 Identities=17% Similarity=0.102 Sum_probs=152.2
Q ss_pred HcCCh-------HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 000191 905 DKGKL-------EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM 977 (1888)
Q Consensus 905 ~qGd~-------dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta 977 (1888)
..|++ ++|+..|++|+.. .+|....+|..+|.++..+|++++|...|++++.+ .++++.
T Consensus 69 ~~g~~~~~~~~~~~A~~~~~rAl~~-------~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~-- 134 (308)
T 2ond_A 69 EKGDMNNAKLFSDEAANIYERAIST-------LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPT-- 134 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHHHHTT-------TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----SSSCTH--
T ss_pred hccchhhcccchHHHHHHHHHHHHH-------hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----cccCcc--
Confidence 56886 8888888888872 14556678999999999999999999999999985 222222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 978 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE-GLGNVHVALRYLHKALKCNQRLLGPD 1056 (1888)
Q Consensus 978 ~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~-~lG~yeeAle~LekALei~ek~~G~d 1056 (1888)
.++.++|.++...|++++|+.+|++|+.+ .+.+ ..++...+.+.. ..|++++|+.+|+++++.. ++
T Consensus 135 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~p~~---~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-----p~ 201 (308)
T 2ond_A 135 LVYIQYMKFARRAEGIKSGRMIFKKARED-----ARTR---HHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-----GD 201 (308)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHTS-----TTCC---THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-----TT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC
Confidence 28899999999999999999999999874 2222 344555555543 3799999999999999985 33
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhh
Q 000191 1057 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIAS 1136 (1888)
Q Consensus 1057 ~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as 1136 (1888)
...++..+|.++..+|++++|...|++|+... .+.++
T Consensus 202 ---~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--~l~p~-------------------------------------- 238 (308)
T 2ond_A 202 ---IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG--SLPPE-------------------------------------- 238 (308)
T ss_dssp ---CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS--SSCGG--------------------------------------
T ss_pred ---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc--CCCHH--------------------------------------
Confidence 35677888999999999999999998887420 00000
Q ss_pred cCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1137 KGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1137 ~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
....++..++..+...|++++|..++++++++.....
T Consensus 239 ----~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 239 ----KSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp ----GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred ----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 1123566667777888999999999999999887543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.15 E-value=5.1e-10 Score=124.50 Aligned_cols=163 Identities=15% Similarity=0.088 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHH
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG----DFNQATIYQQKALDINER 967 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lG----dyeeAl~~~eKAL~I~Er 967 (1888)
++..++.+|..+...+++++|+.+|++|+.. ..+.++++||.+|.. + ++++|+.+|++|+..
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--- 82 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----------GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA--- 82 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT---
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC---
Confidence 4677889999999999999999999999764 234689999999998 7 999999999999652
Q ss_pred hcCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCHHHHH
Q 000191 968 ELGLDHPDTMKSYGDLAVFYYR----LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGNVHVAL 1039 (1888)
Q Consensus 968 ~lG~Dhp~ta~ay~nLA~ly~~----lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~----lG~yeeAl 1039 (1888)
....++++||.+|.. .+++++|+.+|++|++. |. ......++++||.+|.. .+++++|+
T Consensus 83 -------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-----~~-~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 149 (212)
T 3rjv_A 83 -------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-----SE-SDAAVDAQMLLGLIYASGVHGPEDDVKAS 149 (212)
T ss_dssp -------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-----TT-SHHHHHHHHHHHHHHHHTSSSSCCHHHHH
T ss_pred -------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-----CC-CcchHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 346789999999998 89999999999999863 11 11457789999999999 89999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHHH
Q 000191 1040 RYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLM-E-----AYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1040 e~LekALei~ek~~G~d~~~tA~al~nLA~ay~~l-G-----dydeAle~lqkALeI 1090 (1888)
.+|++|++.. . ...++++||.+|... | ++++|+.+|++|.+.
T Consensus 150 ~~~~~A~~~~------~---~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 150 EYFKGSSSLS------R---TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHTS------C---TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC------C---CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 9999998651 1 123688999999864 3 899999999999854
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.7e-10 Score=124.80 Aligned_cols=178 Identities=12% Similarity=0.033 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 000191 910 EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR 989 (1888)
Q Consensus 910 dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~ 989 (1888)
.+|+.+|+++.+. ..+.+++.||.+|...+++++|+.+|++|+.. ....++++||.+|..
T Consensus 3 ~eA~~~~~~aa~~----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------g~~~a~~~lg~~y~~ 62 (212)
T 3rjv_A 3 TEPGSQYQQQAEA----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----------GDGDALALLAQLKIR 62 (212)
T ss_dssp -CTTHHHHHHHHT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHTTS
T ss_pred chHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHc
Confidence 3577888888754 23468999999999999999999999999763 235789999999998
Q ss_pred cC----CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 000191 990 LQ----HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGNVHVALRYLHKALKCNQRLLGPDHIQTA 1061 (1888)
Q Consensus 990 lG----dyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~----lG~yeeAle~LekALei~ek~~G~d~~~tA 1061 (1888)
+ ++++|+.+|++|... .+ ..++++||.+|.. .+++++|+.+|++|++.- .....+
T Consensus 63 -~g~~~~~~~A~~~~~~A~~~-------g~---~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~------~~~~~~ 125 (212)
T 3rjv_A 63 -NPQQADYPQARQLAEKAVEA-------GS---KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS------ESDAAV 125 (212)
T ss_dssp -STTSCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST------TSHHHH
T ss_pred -CCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC------CCcchH
Confidence 7 999999999999652 23 4678899999998 899999999999998641 111357
Q ss_pred HHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhc
Q 000191 1062 ASYHAIAIALSL----MEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASK 1137 (1888)
Q Consensus 1062 ~al~nLA~ay~~----lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~ 1137 (1888)
.++++||.+|.. .+++++|+.+|++|.+. + .+
T Consensus 126 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-----~-~~-------------------------------------- 161 (212)
T 3rjv_A 126 DAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-----S-RT-------------------------------------- 161 (212)
T ss_dssp HHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-----S-CT--------------------------------------
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-----C-CC--------------------------------------
Confidence 789999999999 88999999999988632 1 11
Q ss_pred CCccHHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHHHh
Q 000191 1138 GHLSVSDLLDYINPSHDTK-G-----RNVSTLKRKTYVAKVK 1173 (1888)
Q Consensus 1138 ~~~svaelL~~Lg~~y~~q-G-----dyeEAleyyeKALeL~ 1173 (1888)
...+..||.+|... | ++++|+.+|++|.+.-
T Consensus 162 -----~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 162 -----GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp -----THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 01356667776543 3 8999999999998763
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.15 E-value=9.2e-10 Score=112.78 Aligned_cols=108 Identities=19% Similarity=0.153 Sum_probs=96.8
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 000191 974 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 1053 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~ 1053 (1888)
.+.+.++.+||..++.+|+|++|+.+|.+|+++ +|..+.+++++|.+|..+|+|++|+.+|++|+++....
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~- 75 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET- 75 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-
Confidence 456788999999999999999999999999986 45667889999999999999999999999999997654
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1054 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1054 G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
...+...+.+++++|.+|..+|++++|+.+|++++.+
T Consensus 76 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455677889999999999999999999999999865
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.13 E-value=4e-10 Score=122.72 Aligned_cols=141 Identities=16% Similarity=0.111 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000191 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 969 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~l 969 (1888)
...+..++.+|..++..|++++|+.+|++++. . .+.++.++|.+|..+|++++|+.++++++.+
T Consensus 3 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~-------~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----- 66 (213)
T 1hh8_A 3 LVEAISLWNEGVLAADKKDWKGALDAFSAVQD-------P----HSRICFNIGCMYTILKNMTEAEKAFTRSINR----- 66 (213)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHTSSS-------C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcC-------C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 34567788999999999999999999998841 1 3468999999999999999999999999987
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHHHHCCCHHHHHHH
Q 000191 970 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC--------GPSHPNTAATYINVAMMEEGLGNVHVALRY 1041 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~--------G~dhP~~a~a~~NLA~iy~~lG~yeeAle~ 1041 (1888)
.+....++.++|.+|..+|++++|+.+|++++.+..... ...+|....++.++|.+|..+|++++|+.+
T Consensus 67 ---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 143 (213)
T 1hh8_A 67 ---DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQ 143 (213)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHH
Confidence 355678999999999999999999999999998632100 002356678999999999999999999999
Q ss_pred HHHHHHHH
Q 000191 1042 LHKALKCN 1049 (1888)
Q Consensus 1042 LekALei~ 1049 (1888)
|++++++.
T Consensus 144 ~~~al~~~ 151 (213)
T 1hh8_A 144 LALATSMK 151 (213)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHcC
Confidence 99999764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-09 Score=107.42 Aligned_cols=131 Identities=27% Similarity=0.446 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 973 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh 973 (1888)
..++.+|..+...|++++|+.++++++.. ++....++..+|.++...|++++|+.++++++.. .
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~ 65 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------D 65 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHc--------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------C
Confidence 34677899999999999999999999876 2344568899999999999999999999999876 2
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000191 974 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
+.....+.++|.++...|++++|+.++.+++... |....++..+|.+|...|++++|+.+|+++++.
T Consensus 66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 3456788999999999999999999999998752 333567888999999999999999999999875
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-09 Score=112.20 Aligned_cols=139 Identities=19% Similarity=0.266 Sum_probs=117.0
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 933 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 1012 (1888)
Q Consensus 933 e~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G 1012 (1888)
..+..+..+|.+++..|++++|+.++++++.+ .+....++.++|.+|..+|++++|+.+|.+++.+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------ 76 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------ 76 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 34678999999999999999999999999986 3455788999999999999999999999999986
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 000191 1013 PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 1092 (1888)
Q Consensus 1013 ~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~k 1092 (1888)
+|....++.++|.+|..+|++++|+.+|++++++. +.+. .+..+..++..+...|++++|+.++.++..++.
T Consensus 77 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----p~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 77 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK-----PHDK-DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCCH-HHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence 24456788999999999999999999999999874 3333 233445566668889999999999999888775
Q ss_pred H
Q 000191 1093 A 1093 (1888)
Q Consensus 1093 k 1093 (1888)
.
T Consensus 149 ~ 149 (166)
T 1a17_A 149 S 149 (166)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-09 Score=107.81 Aligned_cols=131 Identities=27% Similarity=0.455 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 936 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 1015 (1888)
Q Consensus 936 ~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dh 1015 (1888)
.+++.+|.+|...|++++|+.++++++.. .+....++..+|.++...|++++|+.++++++.+ .
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~--- 65 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----D--- 65 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----C---
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHc--------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----C---
Confidence 46889999999999999999999999875 2445678899999999999999999999999875 2
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1016 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1016 P~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
|....++.++|.++...|++++|+.++++++... +. ...++..+|.+|...|++++|+.++++++.+
T Consensus 66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----PR---SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CC---ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 3335678899999999999999999999999863 22 2457788999999999999999999998864
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.5e-09 Score=112.43 Aligned_cols=140 Identities=14% Similarity=0.089 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
..+..++.+|..++..|++++|+.+|++++.. .+....++..+|.+|..+|++++|+.++++++.+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------ 76 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------ 76 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 45788999999999999999999999999987 3445678999999999999999999999999987
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000191 971 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
.+....++.++|.+|..+|++++|+.+|++++.+ .+.++. +..+..++..+...|++++|+.+++++..+..
T Consensus 77 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 77 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHDKD-AKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCHH-HHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence 3556788999999999999999999999999986 233433 23345566668889999999999999988875
Q ss_pred Hh
Q 000191 1051 RL 1052 (1888)
Q Consensus 1051 k~ 1052 (1888)
..
T Consensus 149 ~~ 150 (166)
T 1a17_A 149 SL 150 (166)
T ss_dssp HC
T ss_pred cc
Confidence 53
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.10 E-value=2e-10 Score=122.43 Aligned_cols=104 Identities=13% Similarity=0.064 Sum_probs=94.7
Q ss_pred CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000191 930 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 1009 (1888)
Q Consensus 930 dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~k 1009 (1888)
.+|..+.+++.+|.+++.+|++++|+.+|++++.+ +|....++.+||.+|..+|+|++|+.+|++|+.+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--- 99 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--- 99 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---
Confidence 46888899999999999999999999999999987 5677889999999999999999999999999987
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 1010 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1010 i~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
. |....+++++|.+|..+|++++|+.+|++++++.
T Consensus 100 --~---P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 100 --G---KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp --S---SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred --C---CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 2 4445678999999999999999999999999874
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.09 E-value=6.5e-10 Score=121.10 Aligned_cols=137 Identities=15% Similarity=0.078 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 1014 (1888)
Q Consensus 935 A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~d 1014 (1888)
+..++.+|.+++..|++++|+.+|++++. + ...++.++|.+|..+|++++|+.+|++++.+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~----------~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 66 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQD----------P-HSRICFNIGCMYTILKNMTEAEKAFTRSINR-------- 66 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSSS----------C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcC----------C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 45678999999999999999999998841 1 3568999999999999999999999999986
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000191 1015 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL--------GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQT 1086 (1888)
Q Consensus 1015 hP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~--------G~d~~~tA~al~nLA~ay~~lGdydeAle~lqk 1086 (1888)
+|....+++++|.+|..+|++++|+.+|++++++..... ....+....+++++|.+|..+|++++|+.++++
T Consensus 67 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 67 DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 245567899999999999999999999999998653210 002345678899999999999999999999999
Q ss_pred HHHH
Q 000191 1087 TLQI 1090 (1888)
Q Consensus 1087 ALeI 1090 (1888)
++.+
T Consensus 147 al~~ 150 (213)
T 1hh8_A 147 ATSM 150 (213)
T ss_dssp HHTT
T ss_pred HHHc
Confidence 9865
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-09 Score=115.46 Aligned_cols=103 Identities=15% Similarity=0.035 Sum_probs=93.0
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000191 931 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010 (1888)
Q Consensus 931 hpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki 1010 (1888)
+|....+++.+|.+++.+|++++|+.+|++++.+ .|....++.++|.+|..+|++++|+.+|++++.+
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---- 84 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM---- 84 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 5777889999999999999999999999999987 4566788999999999999999999999999986
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 1011 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1011 ~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
. |....+++++|.+|..+|++++|+.+|++++++.
T Consensus 85 -~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 85 -D---IXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp -S---TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -C---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 2 3444678999999999999999999999999986
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.06 E-value=2e-09 Score=128.61 Aligned_cols=144 Identities=16% Similarity=0.119 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC-------CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000191 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP-------YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKAL 962 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~-------dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL 962 (1888)
...+..++.+|..++.+|++++|+.+|++|+.+....... ..+..+.+|.+||.+|..+|++++|+.+|++|+
T Consensus 144 p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3457788999999999999999999999999884221000 012236899999999999999999999999999
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHH-HHH
Q 000191 963 DINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVA-LRY 1041 (1888)
Q Consensus 963 ~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeA-le~ 1041 (1888)
.+ .|....+|+++|.+|..+|++++|+.+|++|+.+ .|....++.++|.++..+|++++| ...
T Consensus 224 ~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~~~~~~~~~~a~~~~ 287 (336)
T 1p5q_A 224 EL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YPNNKAAKTQLAVCQQRIRRQLAREKKL 287 (336)
T ss_dssp HH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 97 4667889999999999999999999999999986 344567889999999999999998 556
Q ss_pred HHHHHHHH
Q 000191 1042 LHKALKCN 1049 (1888)
Q Consensus 1042 LekALei~ 1049 (1888)
|++.+...
T Consensus 288 ~~~~~~~~ 295 (336)
T 1p5q_A 288 YANMFERL 295 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77666544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.8e-09 Score=106.20 Aligned_cols=123 Identities=17% Similarity=0.144 Sum_probs=102.1
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 933 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 1012 (1888)
Q Consensus 933 e~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G 1012 (1888)
..+..+..+|..++..|++++|+.+|++++.+ .|....++.++|.+|..+|++++|+.+|++++.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------ 67 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------ 67 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence 35678999999999999999999999999987 4556789999999999999999999999999986
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 000191 1013 PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL 1073 (1888)
Q Consensus 1013 ~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~ 1073 (1888)
+|....++.++|.+|..+|++++|+.+|++++++..... +.+....++..++.+...
T Consensus 68 --~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 68 --DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccC--CchhHHHHHHHHHHHHHh
Confidence 345567899999999999999999999999999874442 223344555556655443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.04 E-value=4.4e-10 Score=119.85 Aligned_cols=102 Identities=11% Similarity=-0.014 Sum_probs=92.3
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
+|....+++++|.+++.+|++++|+.+|++++.+ +|....++.++|.+|..+|+|++|+.+|++|+++.
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--- 100 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--- 100 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---
Confidence 5788899999999999999999999999999986 35566789999999999999999999999999984
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
++ ...+++++|.+|..+|++++|+.+|++++++
T Consensus 101 --P~---~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 101 --KN---DYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp --SS---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --CC---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33 3467899999999999999999999999976
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.4e-09 Score=124.67 Aligned_cols=171 Identities=11% Similarity=-0.033 Sum_probs=142.1
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000191 932 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 1011 (1888)
Q Consensus 932 pe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~ 1011 (1888)
|.....+..+|..+...|++++|+.+|++++.. +|....++.+||.+|..+|++++|+.+|++++..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~----- 180 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ----- 180 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-----
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-----
Confidence 344567899999999999999999999999987 4666789999999999999999999999998764
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000191 1012 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1012 G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
+|+......+.+..+...++.++|+..|+++++.. |....++++||.+|...|++++|+..|++++..
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~--------P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~- 248 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN--------PEDAALATQLALQLHQVGRNEEALELLFGHLRX- 248 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC--------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-
Confidence 23445566777888888899999999999999873 445668899999999999999999999988854
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000191 1092 RAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 1171 (1888)
Q Consensus 1092 kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALe 1171 (1888)
.+++ ....++..++.+|...|+.++|...|++++.
T Consensus 249 ----~p~~-----------------------------------------~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 249 ----DLTA-----------------------------------------ADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp ----CTTG-----------------------------------------GGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ----cccc-----------------------------------------ccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 2221 0123578888999999999999999999986
Q ss_pred H
Q 000191 1172 V 1172 (1888)
Q Consensus 1172 L 1172 (1888)
.
T Consensus 284 ~ 284 (287)
T 3qou_A 284 A 284 (287)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.00 E-value=7e-09 Score=104.29 Aligned_cols=122 Identities=16% Similarity=0.067 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+..++.+|..++..|++++|+.+|++++.+ .|....++.++|.+|..+|++++|+.++++++.+
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------- 67 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------- 67 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 4678899999999999999999999999987 4556789999999999999999999999999987
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 1031 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~ 1031 (1888)
+|....++.++|.+|..+|++++|+.+|++++.+..... +.|....++..++.+...
T Consensus 68 -~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 68 -DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccC--CchhHHHHHHHHHHHHHh
Confidence 456678999999999999999999999999999864321 224455556666665543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.99 E-value=4.4e-10 Score=139.99 Aligned_cols=154 Identities=18% Similarity=0.143 Sum_probs=123.5
Q ss_pred cCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC-------CChhhHH
Q 000191 906 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL-------DHPDTMK 978 (1888)
Q Consensus 906 qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~-------Dhp~ta~ 978 (1888)
.+++++|+.+|++++.. .+..+.++..+|.+|+.+|+|++|+.+|++|+.+....... ..+....
T Consensus 247 l~~~~~A~~~~~~~~~~--------~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~ 318 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKE--------KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA 318 (457)
T ss_dssp EEEEECCCCGGGSCHHH--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHH--------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHH
Confidence 35666777777776665 45667899999999999999999999999999985321000 0122368
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcH
Q 000191 979 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI 1058 (1888)
Q Consensus 979 ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~ 1058 (1888)
+|+++|.+|..+|+|++|+.+|.+|+.+ +|....+++++|.+|..+|+|++|+.+|++|+++. +
T Consensus 319 ~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--------P 382 (457)
T 1kt0_A 319 AFLNLAMCYLKLREYTKAVECCDKALGL--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--------P 382 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------C
Confidence 9999999999999999999999999986 35557889999999999999999999999999863 4
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHH
Q 000191 1059 QTAASYHAIAIALSLMEAYPLSVQH 1083 (1888)
Q Consensus 1059 ~tA~al~nLA~ay~~lGdydeAle~ 1083 (1888)
....++.+++.++..++++++|...
T Consensus 383 ~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 383 QNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557888999999999999877653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.4e-10 Score=145.61 Aligned_cols=178 Identities=12% Similarity=0.087 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+..++.+|..++.+|++++|+.+|++|+++ +|..+.++.++|.+|..+|++++|+.++++|+.+
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------- 69 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------- 69 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 3455666778888999999999999999987 5666889999999999999999999999999986
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH--HHHCCCHHHHHHHHH------
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMM--EEGLGNVHVALRYLH------ 1043 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~i--y~~lG~yeeAle~Le------ 1043 (1888)
+|....+++++|.+|..+|++++|+.+|++|+++ .+++ ..++.+++.+ +..+|++++|+.+++
T Consensus 70 -~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~p~~---~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~ 140 (477)
T 1wao_1 70 -DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHD---KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 140 (477)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTC---TTHHHHHHHHHHHHHHHHHCCC------CCSTT
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHHHHHHHHHhccccccchhH
Confidence 5667889999999999999999999999999986 2333 3456677777 888999999999999
Q ss_pred -----HHHHHHHHhcCCCcHH---HHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHHHH
Q 000191 1044 -----KALKCNQRLLGPDHIQ---TAASYHAIAIALSLMEAY--PLSVQHEQTTLQILRA 1093 (1888)
Q Consensus 1044 -----kALei~ek~~G~d~~~---tA~al~nLA~ay~~lGdy--deAle~lqkALeI~kk 1093 (1888)
+++++.....++.+.. +...+..+...+...+.+ ..+...+.++.+++..
T Consensus 141 ~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~ 200 (477)
T 1wao_1 141 DSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSK 200 (477)
T ss_dssp TCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcc
Confidence 7766655555555443 233344444455444544 4455577788877765
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=9.3e-09 Score=101.25 Aligned_cols=125 Identities=20% Similarity=0.269 Sum_probs=106.7
Q ss_pred CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000191 930 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 1009 (1888)
Q Consensus 930 dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~k 1009 (1888)
..+..+.++..+|.+++..|++++|+.++++++.. .+....++.++|.+|...|++++|+.++.+++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--- 75 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--- 75 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---
Confidence 34566789999999999999999999999999986 3445778999999999999999999999999985
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChH
Q 000191 1010 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYP 1078 (1888)
Q Consensus 1010 i~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdyd 1078 (1888)
.|....++.++|.+|..+|++++|+.+|++++++. ++ ...++..+|.++..+|+++
T Consensus 76 -----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~---~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 76 -----DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD-----PD---NETYKSNLKIAELKLREAP 131 (131)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TT---CHHHHHHHHHHHHHHTTCC
T ss_pred -----CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----cc---chHHHHHHHHHHHHHhcCC
Confidence 23446678999999999999999999999999873 22 3457788999999988763
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=5.5e-09 Score=103.93 Aligned_cols=124 Identities=20% Similarity=0.200 Sum_probs=105.9
Q ss_pred CCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000191 929 PYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH 1008 (1888)
Q Consensus 929 ~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ 1008 (1888)
...+....++..+|.+++..|++++|+.++++++.. .+....++.++|.+|..+|++++|+.++++++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-- 79 (133)
T 2lni_A 10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL-- 79 (133)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--
Confidence 345667889999999999999999999999999875 3455788999999999999999999999999986
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCC
Q 000191 1009 LTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEA 1076 (1888)
Q Consensus 1009 ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGd 1076 (1888)
.|....++.++|.+|..+|++++|+.+|++++++. +....++..++.++..+|+
T Consensus 80 ------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 80 ------EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD--------SSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------GGGTHHHHHHHHHHHHHTC
T ss_pred ------CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--------CCchHHHHHHHHHHHHhcC
Confidence 24446788999999999999999999999999874 2345677888998887764
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.96 E-value=4.1e-08 Score=116.64 Aligned_cols=239 Identities=6% Similarity=0.003 Sum_probs=178.1
Q ss_pred HHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhcC
Q 000191 894 RQLLESSKTALDKGKL-EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG--DFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~-dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lG--dyeeAl~~~eKAL~I~Er~lG 970 (1888)
+.++...+..+..|.+ ++|+.++.++|.+ +|+...+++..+.++..+| ++++|+.++.+++.+
T Consensus 33 ~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~--------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~------ 98 (306)
T 3dra_A 33 KQIMGLLLALMKAEEYSERALHITELGINE--------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD------ 98 (306)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH------
Confidence 4445555667777877 5899999999988 6777889999999999999 999999999999986
Q ss_pred CCChhhHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH--HHHHH
Q 000191 971 LDHPDTMKSYGDLAVFY----YRL---QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH--VALRY 1041 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly----~~l---GdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~ye--eAle~ 1041 (1888)
+|....++++.+.++ ... +++++++.++.+++.. +|....++++.++++..+|.++ +++++
T Consensus 99 --nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~--------~pkny~aW~~R~~vl~~l~~~~~~~EL~~ 168 (306)
T 3dra_A 99 --NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS--------DPKNHHVWSYRKWLVDTFDLHNDAKELSF 168 (306)
T ss_dssp --CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred --CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcccChHHHHHH
Confidence 566677888888888 666 7899999999999975 5677788999999999999998 99999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCC------hHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 000191 1042 LHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEA------YPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESK 1115 (1888)
Q Consensus 1042 LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGd------ydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qk 1115 (1888)
++++++.. +....++++.+.++...+. ++++++++++++.+ .+.+........++......
T Consensus 169 ~~~~i~~d--------~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~-----~p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 169 VDKVIDTD--------LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK-----CPQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHHHHC--------TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH-----CSSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhC--------CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh-----CCCCccHHHHHHHHHHhcCC
Confidence 99999763 3345678888888888887 88899998888854 56666554444443322111
Q ss_pred HHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000191 1116 AFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1116 a~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
..+....+........ . ....-..++.+++.+|.++|++++|+++|+++.+-.+
T Consensus 236 ~~~~~~~~~~~~~~~~----~-~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~D 289 (306)
T 3dra_A 236 SITQLEEFSLQFVDLE----K-DQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYN 289 (306)
T ss_dssp CGGGGHHHHHTTEEGG----G-TEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHhcc----C-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccC
Confidence 1111222222111100 0 0122345789999999999999999999999876333
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.2e-08 Score=100.36 Aligned_cols=122 Identities=24% Similarity=0.304 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000191 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 969 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~l 969 (1888)
...+..++.+|..++..|++++|+.+|++++.. .+....++..+|.+|..+|++++|+.++++++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----- 75 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI----- 75 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc-----
Confidence 455778899999999999999999999999987 3444678999999999999999999999999986
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH
Q 000191 970 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNV 1035 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~y 1035 (1888)
.+....++.++|.+|..+|++++|+.+|++++.+ .|....++.++|.++..+|++
T Consensus 76 ---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 76 ---DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--------DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTTC
T ss_pred ---CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHhcC
Confidence 3445778999999999999999999999999986 233456778899999988875
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=7.6e-09 Score=131.40 Aligned_cols=133 Identities=18% Similarity=0.066 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..++.+|..+..+|++++|+.+|++++++ +|....++.+||.+|..+|++++|+.++++++.+
T Consensus 23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 86 (568)
T 2vsy_A 23 FVAWLMLADAELGMGDTTAGEMAVQRGLAL--------HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA-------- 86 (568)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------
Confidence 566888899999999999999999999976 4566789999999999999999999999999987
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHH
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL---GNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~l---G~yeeAle~LekALei~ 1049 (1888)
+|....++.+||.+|..+|++++|+.+|++++++ +|....++.++|.+|..+ |++++|+.+|+++++..
T Consensus 87 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 87 APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--------LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 3556789999999999999999999999999986 344567889999999999 99999999999999874
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.1e-08 Score=108.11 Aligned_cols=104 Identities=13% Similarity=0.103 Sum_probs=94.2
Q ss_pred CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000191 930 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 1009 (1888)
Q Consensus 930 dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~k 1009 (1888)
..+..+..+..+|.+|+..|+|++|+.+|++++.+ .|....+|.++|.+|..+|++++|+.+|++++.+
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 74 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV--- 74 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---
Confidence 34567889999999999999999999999999987 3556789999999999999999999999999986
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 1010 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1010 i~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
+|....+++++|.+|..+|++++|+.+|++++++.
T Consensus 75 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 75 -----DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 35557789999999999999999999999999986
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.7e-09 Score=113.54 Aligned_cols=123 Identities=16% Similarity=0.227 Sum_probs=103.1
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 000191 903 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGD 982 (1888)
Q Consensus 903 ~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~n 982 (1888)
+...|++++|+.++++++.. +|....++..+|.+|..+|++++|+.+|++++.+. |....++.+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~ 83 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--------GENAELYAA 83 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------CSCHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHH
Confidence 34678999999999999987 45556799999999999999999999999999873 344678899
Q ss_pred HHHH-HHHcCCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 983 LAVF-YYRLQHT--ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 983 LA~l-y~~lGdy--eeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
+|.+ |...|++ ++|+.+|++++.+ .|....++.++|.+|..+|++++|+.+|++++++.
T Consensus 84 la~~l~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 84 LATVLYYQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999 8899999 9999999999986 24446778999999999999999999999999874
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.94 E-value=8.2e-09 Score=108.78 Aligned_cols=108 Identities=15% Similarity=0.063 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC----------ChhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPY----------HRMTAGAYSLLAVVLYHTGDFNQATIYQQK 960 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~d----------hpe~A~ay~~LA~ly~~lGdyeeAl~~~eK 960 (1888)
..+..+...|..++..|+|++|+.+|.+|+.+........ .+..+.+|.++|.+|..+|+|++|+.++++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 4578899999999999999999999999999865542211 455678999999999999999999999999
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 961 ALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 961 AL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
|+.+ +|....+|+++|.+|..+|++++|+.+|++++.+
T Consensus 89 al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 89 VLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 9997 4667889999999999999999999999999987
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=8.4e-09 Score=102.55 Aligned_cols=122 Identities=16% Similarity=0.130 Sum_probs=104.5
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000191 889 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 968 (1888)
Q Consensus 889 ~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~ 968 (1888)
.......++.+|..++..|++++|+.+|++++.. .+....++..+|.+|..+|++++|+.++++++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---- 79 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL---- 79 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH----
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----
Confidence 3445778899999999999999999999999875 3445678999999999999999999999999986
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC
Q 000191 969 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN 1034 (1888)
Q Consensus 969 lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~ 1034 (1888)
.+....++.++|.+|..+|++++|+.+|++++.+ .|....++.+++.++..+|+
T Consensus 80 ----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 80 ----EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL--------DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGTHHHHHHHHHHHHHTC
T ss_pred ----CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcC
Confidence 3456778999999999999999999999999986 34556678888998887664
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.93 E-value=5e-09 Score=122.80 Aligned_cols=215 Identities=11% Similarity=0.025 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHH
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLL-------AVVLYHTGDFNQATIYQQKALDI 964 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~L-------A~ly~~lGdyeeAl~~~eKAL~I 964 (1888)
-.+.+|..|.-+ ..+++.+|+.+|.+++.+ +|..+.+|..+ +.++..++++.+++..+++++.+
T Consensus 6 ~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~--------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l 76 (282)
T 4f3v_A 6 RLASLFESAVSM-LPMSEARSLDLFTEITNY--------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI 76 (282)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC
T ss_pred HHHHHHHHHhcc-cCCCHHHHHHHHHHHHHh--------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC
Confidence 356788888876 589999999999999988 78888999999 89999999999999999998886
Q ss_pred HHHhcCCCCh-------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 000191 965 NERELGLDHP-------------DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 1031 (1888)
Q Consensus 965 ~Er~lG~Dhp-------------~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~ 1031 (1888)
.-..++.... ..-..+..+|.++...|+|++|.+.|..++. .+|... .++.+|.++..
T Consensus 77 ~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~--------~~p~~~-~~~~~a~l~~~ 147 (282)
T 4f3v_A 77 SMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV--------AGSEHL-VAWMKAVVYGA 147 (282)
T ss_dssp CGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC--------TTCHHH-HHHHHHHHHHH
T ss_pred ChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------cCCchH-HHHHHHHHHHH
Confidence 5444332111 1135566789999999999999999887764 245666 88999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000191 1032 LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY 1111 (1888)
Q Consensus 1032 lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~ 1111 (1888)
.++|++|+.+|++++.. ++......++++||.++..+|++++|+.+|+++.. |+..+.
T Consensus 148 ~~r~~dA~~~l~~a~~~------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~---------- 205 (282)
T 4f3v_A 148 AERWTDVIDQVKSAGKW------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEA---------- 205 (282)
T ss_dssp TTCHHHHHHHHTTGGGC------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTT----------
T ss_pred cCCHHHHHHHHHHhhcc------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCcc----------
Confidence 99999999999866432 12222356889999999999999999999987741 111010
Q ss_pred HHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000191 1112 FESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1112 L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
...+.+.++|.++..+|+.++|...|++++.+...
T Consensus 206 -----------------------------~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 206 -----------------------------CARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp -----------------------------THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred -----------------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 13456788999999999999999999999987643
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=98.93 E-value=6e-08 Score=131.27 Aligned_cols=221 Identities=16% Similarity=0.101 Sum_probs=149.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHH------HHHhcCC--------CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 000191 900 SKTALDKGKLEDAVTYGTKALAK------LVAVCGP--------YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 965 (1888)
Q Consensus 900 G~~~l~qGd~dEAie~~eeAL~l------~eqi~G~--------dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~ 965 (1888)
|.++...|.+++|..+|+++-.. +.+..+. .......+|+.+|.++...|++++|+..|.+|
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA---- 1131 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA---- 1131 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc----
Confidence 77778888888887777765321 1100011 11123568999999999999999999999776
Q ss_pred HHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh------------cCC--------CChhHHHHHHHH
Q 000191 966 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT------------CGP--------SHPNTAATYINV 1025 (1888)
Q Consensus 966 Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki------------~G~--------dhP~~a~a~~NL 1025 (1888)
+....|.++|.++...|+|++|+++|..|+...... .+. ..+.. ..+.++
T Consensus 1132 ---------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~-ad~~~i 1201 (1630)
T 1xi4_A 1132 ---------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNN-AHIQQV 1201 (1630)
T ss_pred ---------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCH-HHHHHH
Confidence 235678889999999999999999998877543110 000 11112 245578
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 000191 1026 AMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDA 1105 (1888)
Q Consensus 1026 A~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a 1105 (1888)
|..|...|+|++|+.+|.+| ..|..+|.+|..+|++++|++.+++|.. ..+. .
T Consensus 1202 Gd~le~eg~YeeA~~~Y~kA----------------~ny~rLA~tLvkLge~q~AIEaarKA~n----------~~aW-k 1254 (1630)
T 1xi4_A 1202 GDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKANS----------TRTW-K 1254 (1630)
T ss_pred HHHHHhcCCHHHHHHHHHhh----------------hHHHHHHHHHHHhCCHHHHHHHHHHhCC----------HHHH-H
Confidence 88888888888888888874 2567788888899999999888888732 2211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 000191 1106 AAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 1173 (1888)
Q Consensus 1106 ~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~ 1173 (1888)
....+.+..+.+..|....... ....+.+..++..|..+|.|++|+.++++++.+.
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~I------------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le 1310 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLHI------------VVHADELEELINYYQDRGYFEELITMLEAALGLE 1310 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHhh------------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 1122344455555554433210 0123456788889999999999999999998754
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.92 E-value=1.5e-09 Score=118.21 Aligned_cols=152 Identities=13% Similarity=0.081 Sum_probs=114.4
Q ss_pred HHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh--------
Q 000191 904 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD-------- 975 (1888)
Q Consensus 904 l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~-------- 975 (1888)
...|++++|.+.+...... .+..+..+..+|.+++..|+|++|+.+|++|+.+.... .+...
T Consensus 15 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~ 84 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEE--------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT--EEWDDQILLDKKK 84 (198)
T ss_dssp -------CCCSGGGCCHHH--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC--TTCCCHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHH--------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--cccchhhHHHHHH
Confidence 3457777777777655433 24456789999999999999999999999999874321 11111
Q ss_pred --hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 000191 976 --TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 1053 (1888)
Q Consensus 976 --ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~ 1053 (1888)
...++.++|.+|..+|++++|+.++.+++.+ +|....+++++|.+|..+|++++|+.+|++++++.
T Consensus 85 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---- 152 (198)
T 2fbn_A 85 NIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN---- 152 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC----
Confidence 1478999999999999999999999999986 34556789999999999999999999999999873
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChHHHH
Q 000191 1054 GPDHIQTAASYHAIAIALSLMEAYPLSV 1081 (1888)
Q Consensus 1054 G~d~~~tA~al~nLA~ay~~lGdydeAl 1081 (1888)
+ ....++..++.++..++++.++.
T Consensus 153 -p---~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 153 -P---NNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp -T---TCHHHHHHHHHHHHHHHHHHC--
T ss_pred -C---CcHHHHHHHHHHHHHHHHHHHHH
Confidence 2 33567788899998888877766
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.92 E-value=8.5e-09 Score=108.64 Aligned_cols=110 Identities=13% Similarity=0.071 Sum_probs=95.9
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC----------ChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000191 932 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD----------HPDTMKSYGDLAVFYYRLQHTELALKYVK 1001 (1888)
Q Consensus 932 pe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D----------hp~ta~ay~nLA~ly~~lGdyeeALey~~ 1001 (1888)
...+..+..+|..++..|+|++|+.+|.+|+.+.......+ .+....+|.++|.+|..+|+|++|+.++.
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 34578899999999999999999999999999866543211 34567899999999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 1002 RALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1002 kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
+|+.+ +|....+++++|.+|..+|++++|+.+|++++++.
T Consensus 88 ~al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 88 EVLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 99987 35567889999999999999999999999999984
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.7e-09 Score=114.43 Aligned_cols=166 Identities=11% Similarity=-0.031 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 936 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 1015 (1888)
Q Consensus 936 ~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dh 1015 (1888)
..+..+|..+...|++++|+.+|++++.+ +|....++.++|.+|...|++++|+.+|++++.+ .+ +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p-~ 72 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDE--------LQSRGDVKLAKADCLLETKQFELAQELLATIPLE-----YQ-D 72 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHH--------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG-----GC-C
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc-----cC-C
Confidence 35678899999999999999999999987 3667889999999999999999999999998764 23 3
Q ss_pred hhHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000191 1016 PNTAATYINVAMM-EEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 1094 (1888)
Q Consensus 1016 P~~a~a~~NLA~i-y~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~ 1094 (1888)
+.. +..++.+ +...+...+|+.+|++++++. |....+++++|.+|...|++++|+.+|++++++
T Consensus 73 ~~~---~~~~~~~~~~~~~~~~~a~~~~~~al~~~--------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---- 137 (176)
T 2r5s_A 73 NSY---KSLIAKLELHQQAAESPELKRLEQELAAN--------PDNFELACELAVQYNQVGRDEEALELLWNILKV---- 137 (176)
T ss_dssp HHH---HHHHHHHHHHHHHTSCHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----
T ss_pred hHH---HHHHHHHHHHhhcccchHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh----
Confidence 432 2223433 223334446899999998863 334578889999999999999999999887732
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1095 LGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 1172 (1888)
Q Consensus 1095 LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL 1172 (1888)
.+++ .....+..++.+|..+|++++|+.+|++++..
T Consensus 138 -~p~~-----------------------------------------~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 138 -NLGA-----------------------------------------QDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp -CTTT-----------------------------------------TTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred -Cccc-----------------------------------------ChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 1211 00125678889999999999999999998864
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.8e-08 Score=104.56 Aligned_cols=103 Identities=15% Similarity=-0.043 Sum_probs=92.2
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000191 889 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 968 (1888)
Q Consensus 889 ~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~ 968 (1888)
.......++.+|..++..|++++|+.+|++++.+ .|....++.++|.+|..+|++++|+.+|++|+.+
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---- 84 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM---- 84 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 4456778899999999999999999999999987 4556778999999999999999999999999987
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000191 969 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 1007 (1888)
Q Consensus 969 lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~ 1007 (1888)
.|....+++++|.+|..+|++++|+.+|++++.+.
T Consensus 85 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 85 ----DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp ----STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34556789999999999999999999999999874
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.91 E-value=1.5e-08 Score=118.49 Aligned_cols=170 Identities=11% Similarity=0.053 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAG-AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~-ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
..++..|..+...|++++|+..|++++.+ +|.... +|..+|.++..+|++++|+..|++|+...
T Consensus 100 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~------- 164 (308)
T 2ond_A 100 LLYFAYADYEESRMKYEKVHSIYNRLLAI--------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA------- 164 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------
Confidence 45667788889999999999999999975 232223 88999999999999999999999998751
Q ss_pred ChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 973 HPDTMKSYGDLAVFYYR-LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~-lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
+.....|...|.+... .|++++|+.+|++++.+. |....++.++|.++..+|++++|+.+|++|+...
T Consensus 165 -p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-- 233 (308)
T 2ond_A 165 -RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-- 233 (308)
T ss_dssp -TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS--
T ss_pred -CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc--
Confidence 2334556666666544 799999999999999863 3445778899999999999999999999998742
Q ss_pred hcCCCcH-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 000191 1052 LLGPDHI-QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 1092 (1888)
Q Consensus 1052 ~~G~d~~-~tA~al~nLA~ay~~lGdydeAle~lqkALeI~k 1092 (1888)
.-.+ ....++..++..+...|+++.|...++++++++.
T Consensus 234 ---~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 234 ---SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp ---SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred ---CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 0012 2345677889999999999999999999997753
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.91 E-value=1e-08 Score=108.32 Aligned_cols=103 Identities=15% Similarity=0.149 Sum_probs=93.5
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000191 889 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 968 (1888)
Q Consensus 889 ~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~ 968 (1888)
....+..++.+|..++..|++++|+.+|++++.+ .|....++.++|.+|+.+|++++|+.++++++.+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---- 74 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV---- 74 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----
Confidence 3456788999999999999999999999999987 4556789999999999999999999999999997
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000191 969 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 1007 (1888)
Q Consensus 969 lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~ 1007 (1888)
+|....+|+++|.+|..+|++++|+.+|++++.+.
T Consensus 75 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 75 ----DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 45668899999999999999999999999999874
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.90 E-value=1.5e-08 Score=109.18 Aligned_cols=118 Identities=18% Similarity=0.130 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC---C-ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000191 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL---D-HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 1009 (1888)
Q Consensus 934 ~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~---D-hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~k 1009 (1888)
.+..+.++|..++.+|+|++|+..|++||.+....... + .+....+|.|+|.++..+|+|++|+.+|.+||+++..
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 35678899999999999999999999999985331000 0 1123459999999999999999999999999998766
Q ss_pred hcCCCChhHHHHH----HHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 1010 TCGPSHPNTAATY----INVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 1010 i~G~dhP~~a~a~----~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
. +.-+|+...+| +++|.+|..+|++++|+.+|++|+++...-
T Consensus 90 ~-~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 90 R-GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp H-CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred c-ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 5 45568888888 999999999999999999999999997554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=98.89 E-value=3.5e-08 Score=122.64 Aligned_cols=222 Identities=11% Similarity=0.069 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHhc
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG---DFNQATIYQQKALDINEREL 969 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lG---dyeeAl~~~eKAL~I~Er~l 969 (1888)
....+.+|..|...+.+++++........... ..++. ++++||.+|...| ++++|+.+|++|+..
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~----~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~----- 208 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAAL----NTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSR----- 208 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHT----TTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH----cCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC-----
Confidence 34567788999999988777766444333221 22343 8899999999999 999999999999875
Q ss_pred CCCChhhHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-H--HHCCCHHHHHHHH
Q 000191 970 GLDHPDTMKSYGDLAVFYYRL----QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMM-E--EGLGNVHVALRYL 1042 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~l----GdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~i-y--~~lG~yeeAle~L 1042 (1888)
| +..+..+++||.+|... +++++|+.+|+++. +....++++||.+ | ...+++++|+.+|
T Consensus 209 g---~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~ 274 (452)
T 3e4b_A 209 G---TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----------PGYPASWVSLAQLLYDFPELGDVEQMMKYL 274 (452)
T ss_dssp T---CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----------GGSTHHHHHHHHHHHHSGGGCCHHHHHHHH
T ss_pred C---CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 2 34456678999999776 79999999999985 1224678899998 5 5789999999999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH--
Q 000191 1043 HKALKCNQRLLGPDHIQTAASYHAIAIALSLME-----AYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESK-- 1115 (1888)
Q Consensus 1043 ekALei~ek~~G~d~~~tA~al~nLA~ay~~lG-----dydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qk-- 1115 (1888)
++|++. ....++++||.+|. .| ++++|+.+|++|. ..++. +...|+.++..
T Consensus 275 ~~Aa~~----------g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--------~g~~~---A~~~Lg~~y~~G~ 332 (452)
T 3e4b_A 275 DNGRAA----------DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--------GREVA---ADYYLGQIYRRGY 332 (452)
T ss_dssp HHHHHT----------TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--------TTCHH---HHHHHHHHHHTTT
T ss_pred HHHHHC----------CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--------CCCHH---HHHHHHHHHHCCC
Confidence 999853 14567889999998 56 9999999998876 34443 34444444332
Q ss_pred ----HHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Q 000191 1116 ----AFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDT----KGRNVSTLKRKTYVAKV 1172 (1888)
Q Consensus 1116 ----a~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~----qGdyeEAleyyeKALeL 1172 (1888)
..+.+........ ..++ ...++.||.+|.. ..++.+|+.+|++|.+.
T Consensus 333 g~~~d~~~A~~~~~~Aa-------~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 333 LGKVYPQKALDHLLTAA-------RNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp TSSCCHHHHHHHHHHHH-------TTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHHHHH-------hhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 3344433332211 1111 2367889999874 56999999999998763
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=1.1e-08 Score=111.35 Aligned_cols=132 Identities=17% Similarity=0.126 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChh----------HHHHHHHHHHHHHhcCCHHHHHHHHH
Q 000191 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRM----------TAGAYSLLAVVLYHTGDFNQATIYQQ 959 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe----------~A~ay~~LA~ly~~lGdyeeAl~~~e 959 (1888)
...+..++.+|..++.+|+|++|+.+|++++.+.... .+... ...++.++|.+|..+|++++|+.+++
T Consensus 35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 112 (198)
T 2fbn_A 35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT--EEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS 112 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC--TTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3457788999999999999999999999999864221 11101 14789999999999999999999999
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHH
Q 000191 960 KALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVAL 1039 (1888)
Q Consensus 960 KAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAl 1039 (1888)
+++.+ ++....+++++|.+|..+|++++|+.+|++++.+ +|....++.+++.++..++++.++.
T Consensus 113 ~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 113 KVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--------NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99987 3566789999999999999999999999999986 2444567888999988887777666
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.88 E-value=3.2e-08 Score=102.42 Aligned_cols=105 Identities=16% Similarity=0.059 Sum_probs=93.4
Q ss_pred CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000191 930 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 1009 (1888)
Q Consensus 930 dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~k 1009 (1888)
.+|.....++.+|.+++..|++++|+.+|++++.+ +|....++.+||.+|..+|++++|+.+|++++.+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--- 81 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM--- 81 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---
Confidence 35777889999999999999999999999999986 4666788999999999999999999999999986
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000191 1010 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 1010 i~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
.+ ....+++++|.+|..+|++++|+.+|++++++..
T Consensus 82 --~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 82 --DI---NEPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp --CT---TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --CC---CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 23 3445688999999999999999999999999863
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.86 E-value=4.2e-08 Score=95.70 Aligned_cols=118 Identities=29% Similarity=0.472 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 1013 (1888)
Q Consensus 934 ~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~ 1013 (1888)
.+.++..+|.++...|++++|+.++++++.. .+....++.++|.+|...|++++|+.++++++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------- 72 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------- 72 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------
Confidence 3678999999999999999999999999886 2445678899999999999999999999999875
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcC
Q 000191 1014 SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLME 1075 (1888)
Q Consensus 1014 dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lG 1075 (1888)
.|....++.++|.+|...|++++|+.+|++++++. + ....++..+|.++...|
T Consensus 73 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~---~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 73 -DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----P---NNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T---TCHHHHHHHHHHHHHHC
T ss_pred -CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----C---CcHHHHHHHHHHHHhcc
Confidence 23345678899999999999999999999999863 2 23456777888877654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.85 E-value=3.1e-08 Score=106.81 Aligned_cols=118 Identities=19% Similarity=0.110 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC----CCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCG----PYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 966 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G----~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~E 966 (1888)
..+..++..|..++..|+|++|+..|++||.+...... ...+..+.+|.++|.++..+|+|++|+..|.+||.++.
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 35788999999999999999999999999998543100 00122456999999999999999999999999999866
Q ss_pred HhcCCCChhhHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000191 967 RELGLDHPDTMKSY----GDLAVFYYRLQHTELALKYVKRALYLLHL 1009 (1888)
Q Consensus 967 r~lG~Dhp~ta~ay----~nLA~ly~~lGdyeeALey~~kALeL~~k 1009 (1888)
+. +.-+|+...+| +++|.++..+|++++|+.+|++|+++.-.
T Consensus 89 ~~-~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 89 RR-GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp HH-CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cc-ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 65 45567788888 99999999999999999999999998644
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.4e-08 Score=126.41 Aligned_cols=136 Identities=17% Similarity=0.129 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC-------CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000191 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP-------YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKAL 962 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~-------dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL 962 (1888)
...+..++.+|..++.+|+|++|+.+|++|+.+....... ..+..+.+|.++|.+|+.+|+|++|+.+|++|+
T Consensus 265 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 265 LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3457788999999999999999999999999975321000 012336899999999999999999999999999
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHH
Q 000191 963 DINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRY 1041 (1888)
Q Consensus 963 ~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~ 1041 (1888)
.+ +|....+|+++|.+|..+|++++|+.+|++|+.+ .|....++.+++.++..++++++|...
T Consensus 345 ~~--------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 345 GL--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hc--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 97 4566889999999999999999999999999985 355667889999999999998877653
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.85 E-value=3e-08 Score=100.10 Aligned_cols=104 Identities=18% Similarity=0.213 Sum_probs=93.4
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000191 932 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 1011 (1888)
Q Consensus 932 pe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~ 1011 (1888)
+..+..+..+|.+++.+|++++|+.+|++++.+ .|....++.++|.+|..+|++++|+.+|++++.+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----- 72 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL----- 72 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----
Confidence 455788999999999999999999999999987 3556789999999999999999999999999986
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 1012 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 1012 G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
+|....++.++|.+|..+|++++|+.+|++++++...
T Consensus 73 ---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 73 ---DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ---CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 2445678999999999999999999999999998755
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.85 E-value=5.5e-08 Score=97.13 Aligned_cols=118 Identities=15% Similarity=0.136 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 936 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 1015 (1888)
Q Consensus 936 ~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dh 1015 (1888)
.+++.+|.+++..|++++|+.++++++.. .++++....++..+|.+|..+|++++|+.+|++++.. .+++
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~ 72 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTH 72 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCC
Confidence 35788999999999999999999999886 3556666689999999999999999999999999985 3566
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 000191 1016 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIA 1068 (1888)
Q Consensus 1016 P~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA 1068 (1888)
+....++.++|.+|..+|++++|+.+|+++++.. +++.....+...+.
T Consensus 73 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 73 DKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY-----PGSDAARVAQERLQ 120 (129)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHH
Confidence 6667889999999999999999999999999874 55554444443333
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.84 E-value=5.3e-08 Score=100.73 Aligned_cols=103 Identities=17% Similarity=-0.033 Sum_probs=91.8
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000191 889 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 968 (1888)
Q Consensus 889 ~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~ 968 (1888)
.......++.+|..++..|++++|+.+|++++.. +|....++..+|.+|..+|++++|+.+|++|+.+
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---- 81 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM---- 81 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 3455677889999999999999999999999987 4566778999999999999999999999999997
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000191 969 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 1007 (1888)
Q Consensus 969 lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~ 1007 (1888)
.|....+++++|.+|..+|++++|+.+|++++.+.
T Consensus 82 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 82 ----DINEPRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp ----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34556788999999999999999999999999875
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.83 E-value=5.7e-08 Score=95.81 Aligned_cols=107 Identities=17% Similarity=0.145 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 933 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 1012 (1888)
Q Consensus 933 e~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G 1012 (1888)
..+.++..+|.+++..|++++|+.++++++.. .+....++.++|.+|..+|++++|+.+|++++.+.... .
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~ 72 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-R 72 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-T
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-c
Confidence 34678999999999999999999999999986 24456889999999999999999999999999986542 3
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000191 1013 PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 1013 ~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
.+++....++.++|.+|..+|++++|+.+|++++++
T Consensus 73 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 73 EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 344445788999999999999999999999999986
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.83 E-value=1.5e-08 Score=117.84 Aligned_cols=102 Identities=19% Similarity=0.226 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 1013 (1888)
Q Consensus 934 ~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~ 1013 (1888)
.+..+..+|.+|+..|++++|+.+|++|+.+ +|....+|.++|.+|..+|++++|+.+|++|+.+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------- 67 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL------- 67 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 3568899999999999999999999999987 4566789999999999999999999999999874
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 1014 SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 1014 dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
+|....+++++|.+|..+|++++|+.+|++++++...
T Consensus 68 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 104 (281)
T 2c2l_A 68 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104 (281)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 4556788999999999999999999999999998754
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.82 E-value=4e-10 Score=141.38 Aligned_cols=130 Identities=19% Similarity=0.282 Sum_probs=108.3
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000191 932 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 1011 (1888)
Q Consensus 932 pe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~ 1011 (1888)
+..+.++..+|.+|+.+|++++|+.+|++|+.+ +|....+|.++|.+|..+|++++|+.+|++|+++
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----- 69 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL----- 69 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----
Confidence 455667888999999999999999999999997 5667899999999999999999999999999985
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH--HHHcCChHHHHHHHH
Q 000191 1012 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIA--LSLMEAYPLSVQHEQ 1085 (1888)
Q Consensus 1012 G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~a--y~~lGdydeAle~lq 1085 (1888)
+|....+++++|.+|..+|++++|+.+|++|+++. ++. ..++.+++.+ +..+|++++|+..++
T Consensus 70 ---~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-----p~~---~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 70 ---DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK-----PHD---KDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp ---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTC---TTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 46667889999999999999999999999999873 322 2355666776 888899999999988
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1.7e-07 Score=127.08 Aligned_cols=239 Identities=14% Similarity=0.111 Sum_probs=157.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh---
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE--- 968 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~--- 968 (1888)
....++.+|..+...|++++|+..|.+| .....|..+|.++.++|+|++|+++|+.|.......
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA-------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Id 1170 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE 1170 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc-------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccccc
Confidence 3567888999999999999999999776 223578889999999999999999998877443110
Q ss_pred --c-------C--------CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 000191 969 --L-------G--------LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 1031 (1888)
Q Consensus 969 --l-------G--------~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~ 1031 (1888)
+ + .+.+.. ..+.++|..|+..|+|++|+.+|.+| ..|..+|.+|..
T Consensus 1171 t~LafaYAKl~rleele~fI~~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA----------------~ny~rLA~tLvk 1233 (1630)
T 1xi4_A 1171 TELIFALAKTNRLAELEEFINGPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVH 1233 (1630)
T ss_pred HHHHHHHHhhcCHHHHHHHHhCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh----------------hHHHHHHHHHHH
Confidence 0 0 011112 34668999999999999999999986 246778999999
Q ss_pred CCCHHHHHHHHHHHHHHHH-----------------HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000191 1032 LGNVHVALRYLHKALKCNQ-----------------RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 1094 (1888)
Q Consensus 1032 lG~yeeAle~LekALei~e-----------------k~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~ 1094 (1888)
+|++++|++++++|..... ...|......+..+..++..|..+|.|++|+.++++++.+
T Consensus 1234 Lge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L---- 1309 (1630)
T 1xi4_A 1234 LGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL---- 1309 (1630)
T ss_pred hCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc----
Confidence 9999999999998855421 0011111123345667888899999999999999888743
Q ss_pred cCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000191 1095 LGPDDLRTQDAAAWL--EYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYV 1169 (1888)
Q Consensus 1095 LG~dh~~tl~a~~~L--a~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKA 1169 (1888)
.+.|.....-+..+ .+--.+..+..+.+......+.. +..- ....++..+.-+|..-|+|++|+..+-..
T Consensus 1310 -eraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~-~r~~---e~~~lW~elv~LY~~~~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A 1310 -ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKV-LRAA---EQAHLWAELVFLYDKYEEYDNAIITMMNH 1381 (1630)
T ss_pred -ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchH-hHHH---HHHHHHHHHHHHHHhcccHHHHHHHHHhc
Confidence 22332222111111 11122233333333222211110 0000 23457788888899999999998555444
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.81 E-value=2.5e-08 Score=121.19 Aligned_cols=133 Identities=15% Similarity=0.118 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc--------CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL--------GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 935 A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~l--------G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
+..+..+|.+|+.+|+|++|+.+|++|+.+..... ....+....+|.++|.+|..+|+|++|+.+|++|+.+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 35688899999999999999999999999765420 0124667889999999999999999999999999974
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Q 000191 1007 LHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQH 1083 (1888)
Q Consensus 1007 ~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~ 1083 (1888)
+|....+++++|.+|..+|++++|+.+|++|+++. ++ ...++..|+.++..++++++|...
T Consensus 303 --------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-----P~---~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 303 --------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-----PE---DKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred --------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CC---CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667889999999999999999999999999874 32 345677889999888888777553
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.81 E-value=9.3e-08 Score=93.21 Aligned_cols=117 Identities=27% Similarity=0.456 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..++.+|..+...|++++|+.+|++++.. .+....++..+|.+|...|++++|+.++++++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------- 72 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------- 72 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------
Confidence 567788899999999999999999999876 2344568899999999999999999999999876
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG 1033 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG 1033 (1888)
.+....++.++|.+|...|++++|+.+|++++.+ +|....++.++|.++..+|
T Consensus 73 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 73 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhcc
Confidence 2445678899999999999999999999999875 2344566778888876544
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.81 E-value=3.2e-08 Score=120.18 Aligned_cols=134 Identities=16% Similarity=0.114 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC--------GPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKAL 962 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~--------G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL 962 (1888)
..+..++.+|..++.+|++++|+.+|++|+.+..... ....+..+.+|.++|.+|+.+|++++|+.++++|+
T Consensus 221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 3467788999999999999999999999999654420 01356678899999999999999999999999999
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 000191 963 DINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALR 1040 (1888)
Q Consensus 963 ~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle 1040 (1888)
.+ +|....+|+++|.+|..+|++++|+.+|++|+.+. |....++..++.++..+++++++.+
T Consensus 301 ~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--------P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 301 EI--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--------PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh--------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 85 46678899999999999999999999999999862 3345667788999888888777654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.1e-08 Score=106.60 Aligned_cols=122 Identities=14% Similarity=0.147 Sum_probs=100.9
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 000191 945 LYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 1024 (1888)
Q Consensus 945 y~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~N 1024 (1888)
+...|++++|+.++++++.. +|....++..+|.+|...|++++|+.+|++++.+. |....++.+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~ 83 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--------GENAELYAA 83 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------CSCHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHH
Confidence 34578999999999999986 35567889999999999999999999999999873 233567889
Q ss_pred HHHH-HHHCCCH--HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1025 VAMM-EEGLGNV--HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1025 LA~i-y~~lG~y--eeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
+|.+ |...|++ ++|+.+|++++++. + ....+++.+|.+|..+|++++|+.++++++.+
T Consensus 84 la~~l~~~~~~~~~~~A~~~~~~al~~~-----p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 84 LATVLYYQASQHMTAQTRAMIDKALALD-----S---NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHHC-----T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhC-----C---CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 9999 8899999 99999999999873 2 33567889999999999999999999999865
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.7e-07 Score=93.55 Aligned_cols=116 Identities=17% Similarity=0.110 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000191 895 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 974 (1888)
Q Consensus 895 ~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp 974 (1888)
.++.+|..++..|++++|+.+|++++.. .+.++....++..+|.+|+.+|++++|+.++++++.. .++++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~ 73 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHD 73 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCc
Confidence 4678899999999999999999999886 3556666689999999999999999999999999986 34555
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 000191 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINV 1025 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NL 1025 (1888)
....++.++|.+|..+|++++|+.+|++++... ++++....+...+
T Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~l 119 (129)
T 2xev_A 74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY-----PGSDAARVAQERL 119 (129)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHH
Confidence 568899999999999999999999999999852 4555444443333
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.79 E-value=3.2e-08 Score=115.05 Aligned_cols=190 Identities=14% Similarity=0.078 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..++.+|..++..|++++|+.+|++++.+ +|..+.++.++|.+|..+|++++|+.++++|+.+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------- 67 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-------- 67 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence 567888999999999999999999999987 4556789999999999999999999999999875
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
+|....+++++|.+|..+|++++|+.+|++++.+...... .....+. .... ..++..+..... ..
T Consensus 68 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~-~~~~~~~----~~~~------~~~~~~~~~~~~----~~ 132 (281)
T 2c2l_A 68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL-NFGDDIP----SALR------IAKKKRWNSIEE----RR 132 (281)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-CCCSHHH----HHHH------HHHHHHHHHHHH----TC
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchh-hHHHHHH----HHHH------HHHHHHHHHHHH----HH
Confidence 4667789999999999999999999999999998643210 0001111 1111 122222222111 11
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAAR 1124 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~ 1124 (1888)
-...... ...++.++ .|++++|++.+++|++ +.+++.........+..-..+.++.+..+.
T Consensus 133 -~~~~~~i---~~~l~~l~--~~~~~~A~~~~~~al~-----~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f 193 (281)
T 2c2l_A 133 -IHQESEL---HSYLTRLI--AAERERELEECQRNHE-----GHEDDGHIRAQQACIEAKHDKYMADMDELF 193 (281)
T ss_dssp -CCCCCHH---HHHHHHHH--HHHHHHHHTTTSGGGT-----TTSCHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HhhhHHH---HHHHHHHH--HHHHHHHHHHHHhhhc-----cccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 1222233 22334443 6899999999998885 356766666666666666655555555544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.6e-07 Score=94.76 Aligned_cols=101 Identities=18% Similarity=0.168 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..++.+|..++..|++++|+.+|++++.+ .+....++.++|.+|..+|++++|+.++++++.+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------- 72 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-------- 72 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence 667889999999999999999999999987 3455679999999999999999999999999987
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 1009 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~k 1009 (1888)
+|....++.++|.+|..+|++++|+.+|++++.+...
T Consensus 73 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 73 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 3556789999999999999999999999999998654
|
| >1sgo_A HSPC210, protein C14ORF129; HR969, structure, human protein, NESG, structural genomics, HS.4104 HOMO sapiens, NESG cluster ID 18152.; NMR {Homo sapiens} SCOP: d.82.3.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=6.5e-09 Score=107.47 Aligned_cols=75 Identities=17% Similarity=0.161 Sum_probs=63.8
Q ss_pred ccccccccccccCCCChhhhhcccccccccCCCCCceEEEEEEEeCCceEEEEEeccceeecCC---------Cccccch
Q 000191 183 LSSFYEFFSLSHLTPPLQFIRKAPKRRVEEISPDDHLLSLDVKLCNGKMVNVEACRKGFYSVGK---------QRILCHN 253 (1888)
Q Consensus 183 l~~~~k~~s~S~wnPPp~~~r~~~~~~~~~~~~~Gdl~YL~v~t~Eg~~~~ITa~~~GFyvn~~---------~~~~~Hs 253 (1888)
+..+++.|.+|..+|++. |+.||+|+|.||+.|+||-+.+||||++. ..-.+-+
T Consensus 44 v~f~V~~I~vS~~LP~t~-----------------~liyiNv~T~Eg~~yCIelt~kGf~Vvs~~~d~~d~~~~~~~fET 106 (139)
T 1sgo_A 44 VLFAVNNMFVSKSLRCAD-----------------DVAYINVETKERNRYCLELTEAGLKVVGYAFDQVDDHLQTPYHET 106 (139)
T ss_dssp HGGGSSEEEECCSSCEET-----------------TEEEEEEECTTCCEEEEEEETTEEEEEESSTTCCCTTCCCCEESS
T ss_pred HHHHhheEEeeccCCCCC-----------------ceEEEEEEEecCCeEEEEEEccEEEEecccCCccCcccccccccC
Confidence 457899999999999873 69999999999999999999999999732 1223559
Q ss_pred HHHHHhhhcHHHHHHHHHHHH
Q 000191 254 IVDLLGQLSRAFDNAYNELMN 274 (1888)
Q Consensus 254 Lv~LL~~iSp~F~~~f~~l~k 274 (1888)
|..||+.|||.|++.|...+-
T Consensus 107 l~~LL~~iSP~fr~~Fg~~L~ 127 (139)
T 1sgo_A 107 VYSLLDTLSPAYREAFGNALL 127 (139)
T ss_dssp SHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHH
Confidence 999999999999999995443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-07 Score=93.62 Aligned_cols=106 Identities=18% Similarity=0.247 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+..++.+|..++..|++++|+.+|++++.. .+....++..+|.+|..+|++++|+.++++++.+.... ..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~ 73 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-RE 73 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-ch
Confidence 3567888999999999999999999999987 34446789999999999999999999999999986542 23
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
++.....++.++|.+|...|++++|+.+|++++.+
T Consensus 74 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 33444789999999999999999999999999985
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=1.2e-07 Score=91.67 Aligned_cols=114 Identities=24% Similarity=0.226 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+..++.+|..++..|++++|+.+|++++.. .|....++..+|.+|..+|++++|+.++++++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------- 67 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL------- 67 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-------
Confidence 3567888999999999999999999999986 3444678999999999999999999999999986
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMME 1029 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy 1029 (1888)
.+....++.++|.+|..+|++++|+.+|++++.+ . |....++..++.+.
T Consensus 68 -~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~---~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 68 -KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH-----E---ANNPQLKEGLQNME 116 (118)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----C---TTCHHHHHHHHHHH
T ss_pred -CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-----C---CCCHHHHHHHHHhh
Confidence 3455778999999999999999999999999874 2 33344555566553
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.74 E-value=3e-07 Score=115.67 Aligned_cols=235 Identities=14% Similarity=0.038 Sum_probs=157.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh-------cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 000191 910 EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH-------TGDFNQATIYQQKALDINERELGLDHPDTMKSYGD 982 (1888)
Q Consensus 910 dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~-------lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~n 982 (1888)
..|+..|++|+.. .|....+|..+|.++.. +|+++.|..+..+|+.++++.+....|.....+..
T Consensus 255 ~~a~~~y~~al~~--------~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~ 326 (530)
T 2ooe_A 255 KRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326 (530)
T ss_dssp HHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred HHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHH
Confidence 4778899999887 24456789999999886 79988333333333333333322124667888999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 000191 983 LAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAA 1062 (1888)
Q Consensus 983 LA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~ 1062 (1888)
+|.++...|++++|...|++++.+ .+.++ ..++.++|.++...|++++|+.+|++|++.. +.. ..
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-----~~~---~~ 391 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAI-----EDIDP--TLVYIQYMKFARRAEGIKSGRMIFKKAREDA-----RTR---HH 391 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHS-----SSSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-----TCC---TH
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCc-----cccCc--hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-----CCc---hH
Confidence 999999999999999999999974 22222 3578899999999999999999999998752 221 22
Q ss_pred HHHHHHHH-HHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCcc
Q 000191 1063 SYHAIAIA-LSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLS 1141 (1888)
Q Consensus 1063 al~nLA~a-y~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~s 1141 (1888)
.+...|.+ +...|++++|...|+++++.. ++++.....+..+ ....+..+.+..+........ ..+...
T Consensus 392 ~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-----p~~~~~~~~~~~~-~~~~g~~~~Ar~~~~~al~~~----~~~~~~ 461 (530)
T 2ooe_A 392 VYVTAALMEYYCSKDKSVAFKIFELGLKKY-----GDIPEYVLAYIDY-LSHLNEDNNTRVLFERVLTSG----SLPPEK 461 (530)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-----TTCHHHHHHHHHH-HTTTTCHHHHHHHHHHHHHSC----CSCGGG
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHC-----CCCHHHHHHHHHH-HHhCCCHhhHHHHHHHHHhcc----CCCHHH
Confidence 33334444 346899999999999999764 5665444332222 112234444444433221110 001112
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1142 VSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1142 vaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
...++..........|+.+.|..+++++++....-.
T Consensus 462 ~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~ 497 (530)
T 2ooe_A 462 SGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 497 (530)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhc
Confidence 344666667777889999999999999999987544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=1.8e-07 Score=90.45 Aligned_cols=99 Identities=17% Similarity=0.162 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 1013 (1888)
Q Consensus 934 ~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~ 1013 (1888)
.+..+..+|.++...|++++|+.++++++.. .|....++.++|.+|..+|++++|+.++++++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------- 67 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL------- 67 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-------
Confidence 3568899999999999999999999999986 3445778999999999999999999999999986
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000191 1014 SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 1014 dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
.|....++.++|.+|..+|++++|+.+|++++++
T Consensus 68 -~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 68 -KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 2444677899999999999999999999999875
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.2e-08 Score=119.76 Aligned_cols=144 Identities=13% Similarity=0.036 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc--CCC-------ChhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 000191 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC--GPY-------HRMTAGAYSLLAVVLYHTGDFNQATIYQQK 960 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~--G~d-------hpe~A~ay~~LA~ly~~lGdyeeAl~~~eK 960 (1888)
...+..++.+|..++..|+|++|+.+|++|+.+..... ... ......+|.++|.+|..+|+|++|+.++++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34577889999999999999999999999998732210 000 000114899999999999999999999999
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-HCCCHHHHH
Q 000191 961 ALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE-GLGNVHVAL 1039 (1888)
Q Consensus 961 AL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~-~lG~yeeAl 1039 (1888)
|+.+ +|....+|+++|.+|..+|++++|+.+|++|+.+. |....++.+|+.+.. ..+..+++.
T Consensus 256 al~~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--------p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 256 VLTE--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--------PDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------
T ss_pred HHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987 45667899999999999999999999999998762 444566777887744 456677888
Q ss_pred HHHHHHHHHH
Q 000191 1040 RYLHKALKCN 1049 (1888)
Q Consensus 1040 e~LekALei~ 1049 (1888)
.+|.+++...
T Consensus 320 ~~~~~~l~~~ 329 (338)
T 2if4_A 320 EMYKGIFKGK 329 (338)
T ss_dssp ----------
T ss_pred HHHHHhhCCC
Confidence 8888887654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.1e-08 Score=119.92 Aligned_cols=141 Identities=11% Similarity=0.052 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC---------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000191 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH---------PDTMKSYGDLAVFYYRLQHTELALKYVKRAL 1004 (1888)
Q Consensus 934 ~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh---------p~ta~ay~nLA~ly~~lGdyeeALey~~kAL 1004 (1888)
.+..+..+|.+|+..|+|++|+.+|++|+.+......... .....+|+++|.+|..+|+|++|+.+|++|+
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567889999999999999999999999987322100000 0001488999999999999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HcCChHHHHHH
Q 000191 1005 YLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALS-LMEAYPLSVQH 1083 (1888)
Q Consensus 1005 eL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~-~lGdydeAle~ 1083 (1888)
.+ +|....+++++|.+|..+|++++|+.+|++++++. +....++..|+.+.. ..+..+++...
T Consensus 258 ~~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--------p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 258 TE--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--------PDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp HH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred Hh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 86 35557789999999999999999999999998774 234456667777743 45666777777
Q ss_pred HHHHHHH
Q 000191 1084 EQTTLQI 1090 (1888)
Q Consensus 1084 lqkALeI 1090 (1888)
|++++..
T Consensus 322 ~~~~l~~ 328 (338)
T 2if4_A 322 YKGIFKG 328 (338)
T ss_dssp -------
T ss_pred HHHhhCC
Confidence 7777644
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=7.3e-08 Score=97.88 Aligned_cols=95 Identities=18% Similarity=0.097 Sum_probs=86.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000191 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 975 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ 975 (1888)
++.+|..++..|++++|+..|++++.+ +|..+.++..||.++..+|++++|+..+++|+.+ .|.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~ 83 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DPK 83 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC
Confidence 567789999999999999999999987 5666789999999999999999999999999997 456
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 976 TMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
...++.+||.+|..+|++++|+.+|++++.+
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 84 DIAVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6778999999999999999999999999875
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.3e-07 Score=95.88 Aligned_cols=102 Identities=18% Similarity=0.115 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+..++.+|..++..|++++|+.+|++++.+ .++++....++.++|.+|..+|++++|+.++++++.+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------- 94 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL-----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK------- 94 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-------
Confidence 4677889999999999999999999999875 2334445789999999999999999999999999987
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
++....++.++|.+|..+|++++|+.+|++++.+
T Consensus 95 -~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 95 -DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp -TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3445788999999999999999999999999986
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=8.2e-08 Score=97.41 Aligned_cols=106 Identities=15% Similarity=0.126 Sum_probs=91.9
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000191 931 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010 (1888)
Q Consensus 931 hpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki 1010 (1888)
.+..+..+..+|..++..|++++|+.+|++++.+ .++++....++.++|.+|..+|++++|+.+|++++.+
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---- 94 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGL-----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---- 94 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----
Confidence 3556788999999999999999999999999875 2333345789999999999999999999999999986
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 1011 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1011 ~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
+|....++.++|.+|..+|++++|+.+|++++++.
T Consensus 95 ----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 95 ----DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp ----TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred ----CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 23446778999999999999999999999999873
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=98.67 E-value=2e-07 Score=115.86 Aligned_cols=223 Identities=16% Similarity=0.031 Sum_probs=150.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000191 895 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 974 (1888)
Q Consensus 895 ~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp 974 (1888)
.++.+|..|...+...++...++........ ....+++.||.+|...+.+++++....+.... .. ..++
T Consensus 108 A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~-------g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~---a~-~~~~ 176 (452)
T 3e4b_A 108 TLIPLAMLYLQYPHSFPNVNAQQQISQWQAA-------GYPEAGLAQVLLYRTQGTYDQHLDDVERICKA---AL-NTTD 176 (452)
T ss_dssp CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH-------TCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHH---HT-TTCT
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC-------CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHH---HH-cCCH
Confidence 4556677777766655443333322222211 12357889999999999777776653333322 21 1233
Q ss_pred hhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHH
Q 000191 975 DTMKSYGDLAVFYYRLQ---HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL----GNVHVALRYLHKALK 1047 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lG---dyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~l----G~yeeAle~LekALe 1047 (1888)
. ++++||.+|...| ++++|+.+|+++... | +..+..+++||.+|... +++++|+.+|+++.
T Consensus 177 ~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~-----g---~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa- 244 (452)
T 3e4b_A 177 I---CYVELATVYQKKQQPEQQAELLKQMEAGVSR-----G---TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA- 244 (452)
T ss_dssp T---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-----T---CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-
T ss_pred H---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC-----C---CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-
Confidence 3 8899999999999 999999999999873 2 23355668899999765 79999999999986
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHH-H--HHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH------HHH
Q 000191 1048 CNQRLLGPDHIQTAASYHAIAIA-L--SLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESK------AFE 1118 (1888)
Q Consensus 1048 i~ek~~G~d~~~tA~al~nLA~a-y--~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qk------a~e 1118 (1888)
+....++++||.+ | ...+++++|+.+|++|.+. .++. +..+|+.++.. ..+
T Consensus 245 ----------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-------g~~~---A~~~Lg~~y~~G~g~~~d~~ 304 (452)
T 3e4b_A 245 ----------PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-------DQPR---AELLLGKLYYEGKWVPADAK 304 (452)
T ss_dssp ----------GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-------TCHH---HHHHHHHHHHHCSSSCCCHH
T ss_pred ----------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-------CCHH---HHHHHHHHHHcCCCCCCCHH
Confidence 1234678899998 4 4689999999999998732 2443 34444444332 444
Q ss_pred HHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHH----cCChHHHHHHHHHHHH
Q 000191 1119 QQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDT----KGRNVSTLKRKTYVAK 1171 (1888)
Q Consensus 1119 ~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~----qGdyeEAleyyeKALe 1171 (1888)
.+........ . .....++.||.+|.. ..++++|+.+|+++.+
T Consensus 305 ~A~~~~~~Aa-~----------g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 305 AAEAHFEKAV-G----------REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HHHHHHHTTT-T----------TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh-C----------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 4444443332 1 234578999999876 4499999999999986
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=8.9e-08 Score=97.26 Aligned_cols=98 Identities=15% Similarity=0.152 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 936 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 1015 (1888)
Q Consensus 936 ~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dh 1015 (1888)
..+..+|.++...|++++|+..+++++.+ +|....++.+||.++..+|++++|+.+|++|+.+ .
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~ 81 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------D 81 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence 34678999999999999999999999987 4667889999999999999999999999999986 3
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 1016 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1016 P~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
|....++.++|.+|..+|++++|+.+|++++++.
T Consensus 82 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 82 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4455688999999999999999999999998764
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.4e-06 Score=105.15 Aligned_cols=238 Identities=10% Similarity=0.067 Sum_probs=168.8
Q ss_pred HHHHHHcCCh-HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 000191 900 SKTALDKGKL-EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG-DFNQATIYQQKALDINERELGLDHPDTM 977 (1888)
Q Consensus 900 G~~~l~qGd~-dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lG-dyeeAl~~~eKAL~I~Er~lG~Dhp~ta 977 (1888)
-+..+..+.+ ++|+.++.++|.+ +|....+++..+.++..+| .+++++.++.+++.. +|...
T Consensus 60 ~r~~~~~~e~se~AL~lt~~~L~~--------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--------nPKny 123 (349)
T 3q7a_A 60 FRAIAAKEEKSERALELTEIIVRM--------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--------NLKSY 123 (349)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--------TCCCH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCCcH
Confidence 3444555554 6899999999987 6777789999999999999 599999999999865 57788
Q ss_pred HHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH--------HHHHHHHHHHH
Q 000191 978 KSYGDLAVFYYRL-Q-HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH--------VALRYLHKALK 1047 (1888)
Q Consensus 978 ~ay~nLA~ly~~l-G-dyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~ye--------eAle~LekALe 1047 (1888)
.++++.+.++..+ + +++++++++.+++.+ +|....+++..+.++..+|.++ +++++++++++
T Consensus 124 ~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~--------dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~ 195 (349)
T 3q7a_A 124 QVWHHRLLLLDRISPQDPVSEIEYIHGSLLP--------DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR 195 (349)
T ss_dssp HHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS--------CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH
Confidence 8999999999998 7 899999999988853 5667788999999999888887 88898888887
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH----
Q 000191 1048 CNQRLLGPDHIQTAASYHAIAIALSLMEA-------YPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKA---- 1116 (1888)
Q Consensus 1048 i~ek~~G~d~~~tA~al~nLA~ay~~lGd-------ydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka---- 1116 (1888)
.. +....++++.+.++..++. ++++++++++++.+ .+++........++..-....
T Consensus 196 ~d--------p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~-----~P~n~SaW~Ylr~Ll~~~~~~~~~~ 262 (349)
T 3q7a_A 196 VD--------GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL-----IPHNVSAWNYLRGFLKHFSLPLVPI 262 (349)
T ss_dssp HC--------TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCCSGGG
T ss_pred hC--------CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhcCCCcccc
Confidence 63 3445678888999988887 67888888888754 566665544444432211111
Q ss_pred ---------------HHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhccc
Q 000191 1117 ---------------FEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 1176 (1888)
Q Consensus 1117 ---------------~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi 1176 (1888)
........... ............-.-++.+|+.+|..+|+.++|++.|+...+-.|-+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpi 335 (349)
T 3q7a_A 263 LPAILPYTASKLNPDIETVEAFGFPM--PSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQM 335 (349)
T ss_dssp HHHHGGGTC--------------CCC--CC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG
T ss_pred cccccccccccccccchhHHHHHHHH--HhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChH
Confidence 00011111111 10000000112334588999999999999999999998866554443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.60 E-value=7.1e-08 Score=92.65 Aligned_cols=102 Identities=17% Similarity=0.146 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 933 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 1012 (1888)
Q Consensus 933 e~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G 1012 (1888)
..+.++..+|.+++.+|++++|+.++++++.+ .+....++.++|.+|..+|++++|+.+|++++.+ .
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~ 70 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV-----I 70 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----S
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----C
Confidence 33457889999999999999999999999986 2445678999999999999999999999999975 2
Q ss_pred CCChhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
Q 000191 1013 PSHPNTAATYINVAMMEEGL-GNVHVALRYLHKALKC 1048 (1888)
Q Consensus 1013 ~dhP~~a~a~~NLA~iy~~l-G~yeeAle~LekALei 1048 (1888)
++ .....++.++|.+|..+ |++++|+.++++++..
T Consensus 71 ~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 71 ED-EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp CC-TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred cc-cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 22 01467789999999999 9999999999998764
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=98.59 E-value=3.3e-08 Score=122.09 Aligned_cols=224 Identities=13% Similarity=0.074 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000191 895 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 974 (1888)
Q Consensus 895 ~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp 974 (1888)
.+..+|..++.+|++++|++.|.++- ....|..++..+...|++++|+.+++.++... +
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika~-------------D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~--------~ 92 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKAD-------------DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--------R 92 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCC-------------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--------c
Confidence 55677899999999999999997641 12367888889999999999999998887641 1
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 000191 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G 1054 (1888)
+ ..+...|+.+|.++|++.++.++++. |.. .++.++|..|...|+|++|+.+|.++
T Consensus 93 ~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-------------pn~-~a~~~IGd~~~~~g~yeeA~~~Y~~a--------- 148 (449)
T 1b89_A 93 E-SYVETELIFALAKTNRLAELEEFING-------------PNN-AHIQQVGDRCYDEKMYDAAKLLYNNV--------- 148 (449)
T ss_dssp -----------------CHHHHTTTTTC-------------C-----------------CTTTHHHHHHHT---------
T ss_pred c-chhHHHHHHHHHHhCCHHHHHHHHcC-------------CcH-HHHHHHHHHHHHcCCHHHHHHHHHHh---------
Confidence 1 34567899999999999998877642 222 38899999999999999999999866
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhh
Q 000191 1055 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASI 1134 (1888)
Q Consensus 1055 ~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~ 1134 (1888)
..+..||.+|..+|+|++|++.+++|. ++.+.... ..+....+.++.|+..... ..
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA~----------~~~~Wk~v-~~aCv~~~ef~lA~~~~l~---L~--- 204 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKAN----------STRTWKEV-CFACVDGKEFRLAQMCGLH---IV--- 204 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHHT----------CHHHHHHH-HHHHHHTTCHHHHHHTTTT---TT---
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHcC----------CchhHHHH-HHHHHHcCcHHHHHHHHHH---HH---
Confidence 246788999999999999999999882 33332221 1234445556665433221 11
Q ss_pred hhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhccccCCCCCCCCCCcchhhhhccc
Q 000191 1135 ASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDNNLTSPDGSSKEVLRESS 1197 (1888)
Q Consensus 1135 as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~q~~~~a~~eIa~LEikyet~ 1197 (1888)
.++ +-+..+...|.+.|++++|+.++++++.+.+.- ...--++..+..||.-.
T Consensus 205 ---~~a---d~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah----~~~ftel~il~~ky~p~ 257 (449)
T 1b89_A 205 ---VHA---DELEELINYYQDRGYFEELITMLEAALGLERAH----MGMFTELAILYSKFKPQ 257 (449)
T ss_dssp ---TCH---HHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC----HHHHHHHHHHHHTTCHH
T ss_pred ---hCH---hhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHH----HHHHHHHHHHHHhcCHH
Confidence 111 123457788999999999999999998764221 11113445566666544
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.56 E-value=9.7e-07 Score=110.95 Aligned_cols=168 Identities=15% Similarity=0.049 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHH-------cCChH-------HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHH
Q 000191 893 GRQLLESSKTALD-------KGKLE-------DAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQ 958 (1888)
Q Consensus 893 A~~LlelG~~~l~-------qGd~d-------EAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~ 958 (1888)
...++..|..+.. .|+++ +|+..|++|+.. ..|....++..+|.++..+|++++|...|
T Consensus 272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-------~~p~~~~l~~~~~~~~~~~g~~~~A~~~~ 344 (530)
T 2ooe_A 272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-------LLKKNMLLYFAYADYEESRMKYEKVHSIY 344 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-------TCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-------hCcccHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3445556666664 79987 677777777641 24556778999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-HHHCCCHHH
Q 000191 959 QKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMM-EEGLGNVHV 1037 (1888)
Q Consensus 959 eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~i-y~~lG~yee 1037 (1888)
++++.+ .+++ ...+|.++|.++...|++++|+.+|.+|+.. . |.....+...|.+ +...|++++
T Consensus 345 ~~al~~-----~p~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~-----~---~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 345 NRLLAI-----EDID--PTLVYIQYMKFARRAEGIKSGRMIFKKARED-----A---RTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp HHHHHS-----SSSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----T---TCCTHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhCc-----cccC--chHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----c---CCchHHHHHHHHHHHHHcCChhH
Confidence 999985 2222 2358999999999999999999999999863 1 2223334445554 446999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1038 ALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1038 Ale~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
|+.+|+++++.. +++ ..++..++.++...|++++|...|++|+..
T Consensus 410 A~~~~e~al~~~-----p~~---~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 410 AFKIFELGLKKY-----GDI---PEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHHHHHH-----TTC---HHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHC-----CCC---HHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 999999999875 333 456778899999999999999999999854
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.9e-07 Score=93.23 Aligned_cols=90 Identities=20% Similarity=0.200 Sum_probs=76.1
Q ss_pred HcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 000191 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLA 984 (1888)
Q Consensus 905 ~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA 984 (1888)
.+|++++|+.+|++++.+ +..+|....++.+||.+|+.+|++++|+.++++++.+ +|....++.++|
T Consensus 2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~ 68 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYA 68 (117)
T ss_dssp -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence 468999999999999875 2335778899999999999999999999999999987 455678899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHH
Q 000191 985 VFYYRLQHTELALKYVKRALYLL 1007 (1888)
Q Consensus 985 ~ly~~lGdyeeALey~~kALeL~ 1007 (1888)
.+|..+|++++|+.+|++++.+.
T Consensus 69 ~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 69 MVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999863
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.4e-07 Score=91.44 Aligned_cols=90 Identities=24% Similarity=0.221 Sum_probs=75.9
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 000191 947 HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVA 1026 (1888)
Q Consensus 947 ~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA 1026 (1888)
.+|++++|+.+|++|+.+ +.++|....++.+||.+|..+|++++|+.+|++++.+ +|....++.++|
T Consensus 2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~ 68 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYA 68 (117)
T ss_dssp -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence 468999999999999885 3345788899999999999999999999999999986 344567889999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHH
Q 000191 1027 MMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1027 ~iy~~lG~yeeAle~LekALei~ 1049 (1888)
.+|..+|++++|+.+|+++++..
T Consensus 69 ~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 69 MVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999875
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.46 E-value=3.6e-07 Score=87.62 Aligned_cols=96 Identities=13% Similarity=0.082 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000191 895 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 974 (1888)
Q Consensus 895 ~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp 974 (1888)
.++.+|..++..|++++|+.+|++++.+ .+....++..+|.+|..+|++++|+.++++++.+ .+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~~ 71 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV--------IE 71 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------SC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------Cc
Confidence 3556788899999999999999999987 2344578999999999999999999999999986 23
Q ss_pred h--hHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Q 000191 975 D--TMKSYGDLAVFYYRL-QHTELALKYVKRALYL 1006 (1888)
Q Consensus 975 ~--ta~ay~nLA~ly~~l-GdyeeALey~~kALeL 1006 (1888)
. ...++.++|.+|..+ |++++|++++++++..
T Consensus 72 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 72 DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp CTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred ccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 4 578899999999999 9999999999998864
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.43 E-value=6.3e-07 Score=105.15 Aligned_cols=131 Identities=15% Similarity=-0.013 Sum_probs=108.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000191 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 975 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ 975 (1888)
.+..|..+...|+|++|.+.|..++.. .|... +++.+|.+++..+++++|+.++++++.. .++.
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--------~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~-------~d~~ 168 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--------GSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW-------PDKF 168 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--------TCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC-------SCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc-------CCcc
Confidence 344578889999999999999877542 45555 8899999999999999999999866442 1333
Q ss_pred -hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000191 976 -TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN-TAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 976 -ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~-~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
...++++||.++..+|++++|+.+|++++. |+..|. ...+++++|.++..+|+.++|..+|++++..
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 346899999999999999999999999974 333255 6678899999999999999999999999986
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=3.5e-06 Score=108.13 Aligned_cols=167 Identities=13% Similarity=0.141 Sum_probs=137.7
Q ss_pred HHHHHHcCCh-HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHHHHh
Q 000191 900 SKTALDKGKL-EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD----------FNQATIYQQKALDINERE 968 (1888)
Q Consensus 900 G~~~l~qGd~-dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGd----------yeeAl~~~eKAL~I~Er~ 968 (1888)
.......|.+ ++|+.++.+++.+ +|....+|+..+.++..+|+ +++|+.++.+++..
T Consensus 35 ~~~~~~~~~~~eeal~~~~~~l~~--------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---- 102 (567)
T 1dce_A 35 VFQKRQAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---- 102 (567)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh----
Confidence 3445566666 4679999999987 67778899999999999998 99999999999876
Q ss_pred cCCCChhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
Q 000191 969 LGLDHPDTMKSYGDLAVFYYRLQ--HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG-NVHVALRYLHKA 1045 (1888)
Q Consensus 969 lG~Dhp~ta~ay~nLA~ly~~lG--dyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG-~yeeAle~LekA 1045 (1888)
+|....+|++.+.++...+ ++++|++++.+++++ +|....+|++.++++..+| .++++++++.++
T Consensus 103 ----~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~--------d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~ 170 (567)
T 1dce_A 103 ----NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSL 170 (567)
T ss_dssp ----CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTT
T ss_pred ----CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh--------ccccccHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 6778899999999999999 779999999999986 5666788999999999999 899999999988
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 000191 1046 LKCNQRLLGPDHIQTAASYHAIAIALSLM--------------EAYPLSVQHEQTTLQILRAKLGPDDLRTQ 1103 (1888)
Q Consensus 1046 Lei~ek~~G~d~~~tA~al~nLA~ay~~l--------------GdydeAle~lqkALeI~kk~LG~dh~~tl 1103 (1888)
++. ++....++++.+.++..+ +.+++|++++.+|+.+ .+++....
T Consensus 171 I~~--------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~-----~P~~~saW 229 (567)
T 1dce_A 171 ITR--------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT-----DPNDQSAW 229 (567)
T ss_dssp TTT--------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH-----CSSCSHHH
T ss_pred HHH--------CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh-----CCCCccHH
Confidence 865 344557888889888875 5568888888888754 56665443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=9.2e-05 Score=88.85 Aligned_cols=172 Identities=14% Similarity=0.157 Sum_probs=134.0
Q ss_pred HHHHHcCChH-HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHHHHhc
Q 000191 901 KTALDKGKLE-DAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD----------FNQATIYQQKALDINEREL 969 (1888)
Q Consensus 901 ~~~l~qGd~d-EAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGd----------yeeAl~~~eKAL~I~Er~l 969 (1888)
......|.++ +|+.++.++|.+ +|....+++..+.++..++. +++++.++.+++..
T Consensus 37 ~~~~~~~e~s~eaL~~t~~~L~~--------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~----- 103 (331)
T 3dss_A 37 FQKRQAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV----- 103 (331)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh-----
Confidence 4455678877 688888888865 67777888888888887776 46666666666654
Q ss_pred CCCChhhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
Q 000191 970 GLDHPDTMKSYGDLAVFYYRLQH--TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN-VHVALRYLHKAL 1046 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGd--yeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~-yeeAle~LekAL 1046 (1888)
+|....++++.+.++...++ +++++.++.+++++ +|....++++.+.++...|. ++++++++.+++
T Consensus 104 ---~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I 172 (331)
T 3dss_A 104 ---NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLI 172 (331)
T ss_dssp ---CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 67788899999999999994 89999999999985 56677889999999999999 699999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 000191 1047 KCNQRLLGPDHIQTAASYHAIAIALSLM--------------EAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL 1109 (1888)
Q Consensus 1047 ei~ek~~G~d~~~tA~al~nLA~ay~~l--------------GdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~L 1109 (1888)
+.. +....++++.+.++..+ +.++++++++.+++.+ .|++........++
T Consensus 173 ~~~--------p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~-----~P~d~SaW~Y~r~l 236 (331)
T 3dss_A 173 TRN--------FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT-----DPNDQSAWFYHRWL 236 (331)
T ss_dssp HHC--------SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH-----STTCHHHHHHHHHH
T ss_pred HHC--------CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH
Confidence 763 34456777888888776 4577888888888754 57777665544444
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.31 E-value=2.7e-05 Score=92.55 Aligned_cols=186 Identities=9% Similarity=0.018 Sum_probs=129.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000191 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 975 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ 975 (1888)
++.+|.++...|++++|+.++.+.+.. ++ ......++..++.+|..+|+.+.|...+++...+.+... ...+
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i~~-----~~-~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~--~~~d 174 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGIDN-----DE-AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTV--SGDN 174 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTS-----SC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHH--HHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcc-----CC-CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccc--ccch
Confidence 356789999999999999999998653 11 135678999999999999999999999998866521000 0012
Q ss_pred hHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 976 TMKSYGDLAVFYYRLQ--HTELALKYVKRALYLLHLTCGPSHPN--TAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lG--dyeeALey~~kALeL~~ki~G~dhP~--~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
....+.--|++....| ++++|..+|+++.. ..|+ ....+.+ ++..+|++++|...++.+++..-.
T Consensus 175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~--------~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 175 EMILNLAESYIKFATNKETATSNFYYYEELSQ--------TFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT--------TSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--------hCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhccc
Confidence 3333334455566667 99999999999654 2343 2333444 899999999999999977765422
Q ss_pred hcCCC--cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 000191 1052 LLGPD--HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAA 1107 (1888)
Q Consensus 1052 ~~G~d--~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~ 1107 (1888)
.-..+ .+..+.++.+++.+...+|+ +|.+++.++.+ ..|+|+.+++...
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~-----~~P~hp~i~d~~~ 294 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK-----LDHEHAFIKHHQE 294 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH-----TTCCCHHHHHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH-----hCCCChHHHHHHH
Confidence 10000 13456778888888888897 78888887764 4699987765544
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.29 E-value=3.4e-07 Score=88.67 Aligned_cols=96 Identities=11% Similarity=0.194 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 1014 (1888)
Q Consensus 935 A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~d 1014 (1888)
+.++..+|.+++.+|++++|+.+|++|+.+ .|....++.++|.+|..+|++++|+.+|++++.+ .++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~ 70 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY-----TST 70 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----CSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCC
Confidence 568899999999999999999999999987 3556788999999999999999999999999975 233
Q ss_pred C---hhHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 000191 1015 H---PNTAATYINVAMMEEGLGNVHVALRYLH 1043 (1888)
Q Consensus 1015 h---P~~a~a~~NLA~iy~~lG~yeeAle~Le 1043 (1888)
+ .....++.++|.++..+|++++|+..++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 71 AEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 2 1136778899999999888877766554
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.27 E-value=5.2e-06 Score=77.43 Aligned_cols=87 Identities=30% Similarity=0.497 Sum_probs=73.5
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000191 931 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010 (1888)
Q Consensus 931 hpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki 1010 (1888)
.+..+.++..+|.+|..+|++++|+.++++++.+ .+....++.++|.+|...|++++|+.+|++++.+
T Consensus 5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---- 72 (91)
T 1na3_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---- 72 (91)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 3456788999999999999999999999999986 3455678999999999999999999999999986
Q ss_pred cCCCChhHHHHHHHHHHHHHHCC
Q 000191 1011 CGPSHPNTAATYINVAMMEEGLG 1033 (1888)
Q Consensus 1011 ~G~dhP~~a~a~~NLA~iy~~lG 1033 (1888)
+|....++.++|.++..+|
T Consensus 73 ----~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 73 ----DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp ----CTTCHHHHHHHHHHHHHHC
T ss_pred ----CCCCHHHHHHHHHHHHhcC
Confidence 2444567888999887654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=98.26 E-value=1.6e-06 Score=107.29 Aligned_cols=229 Identities=14% Similarity=0.051 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...+...+..+...|++++|+.+++.+++... . +.+...|+.+|.++|++.++..+++.
T Consensus 61 ~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~--------~-~~i~~~Li~~Y~Klg~l~e~e~f~~~------------ 119 (449)
T 1b89_A 61 PSSYMEVVQAANTSGNWEELVKYLQMARKKAR--------E-SYVETELIFALAKTNRLAELEEFING------------ 119 (449)
T ss_dssp ---------------------------------------------------------CHHHHTTTTTC------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc--------c-chhHHHHHHHHHHhCCHHHHHHHHcC------------
Confidence 33455556677778999999998888876411 1 23455566666666666666555531
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--H
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN--Q 1050 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~--e 1050 (1888)
|.. .++.++|..|+..|+|++|..+|.++ ..+..+|.+|..+|+|++|++.+++|.... .
T Consensus 120 -pn~-~a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk 181 (449)
T 1b89_A 120 -PNN-AHIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWK 181 (449)
T ss_dssp -C-----------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHH
T ss_pred -CcH-HHHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHHHHHHHHcCCchhHH
Confidence 111 25666666666666666666666644 124456666666666666666666553220 0
Q ss_pred Hh---------------cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 000191 1051 RL---------------LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESK 1115 (1888)
Q Consensus 1051 k~---------------~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qk 1115 (1888)
.. .|..-...+.-+..+..+|...|.+++|+.++++++. +.+.|.....-+..+ +..-+
T Consensus 182 ~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~-----le~ah~~~ftel~il-~~ky~ 255 (449)
T 1b89_A 182 EVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALG-----LERAHMGMFTELAIL-YSKFK 255 (449)
T ss_dssp HHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-----STTCCHHHHHHHHHH-HHTTC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC-----CcHHHHHHHHHHHHH-HHhcC
Confidence 00 0000001112233467889999999999999998873 334554333222211 22112
Q ss_pred HHHHHHHHHhcCCCCchhh--hhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000191 1116 AFEQQEAARNGTRKPDASI--ASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYV 1169 (1888)
Q Consensus 1116 a~e~AeAl~~~~~~~~~~~--as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKA 1169 (1888)
-....+.+.......+... ..- ....++..+.-+|...++|+.|+..+-+.
T Consensus 256 p~k~~ehl~~~~~~ini~k~~~~~---~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 256 PQKMREHLELFWSRVNIPKVLRAA---EQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHHHHHHHHHHSTTSCHHHHHHHH---HTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHH---HHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 2222222222111111110 000 11235677788889999999998766544
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.25 E-value=6.1e-07 Score=86.89 Aligned_cols=97 Identities=16% Similarity=0.133 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+..++.+|..++..|++++|+.+|++++.+ .|....++.++|.+|..+|++++|+.++++++.+. +
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p 69 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-----S 69 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-----S
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----C
Confidence 3567888999999999999999999999987 44556789999999999999999999999999862 2
Q ss_pred CC---hhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000191 972 DH---PDTMKSYGDLAVFYYRLQHTELALKYVK 1001 (1888)
Q Consensus 972 Dh---p~ta~ay~nLA~ly~~lGdyeeALey~~ 1001 (1888)
++ .....++.++|.++..+|+++.|+..++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 70 TAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp STTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 22 1126788999999999998888776554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=2.4e-06 Score=92.02 Aligned_cols=86 Identities=16% Similarity=0.152 Sum_probs=75.3
Q ss_pred HcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHHHHHhcCCCCh
Q 000191 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDF----------NQATIYQQKALDINERELGLDHP 974 (1888)
Q Consensus 905 ~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdy----------eeAl~~~eKAL~I~Er~lG~Dhp 974 (1888)
+.++|++|+..+++++++ +|..+.+|.++|.++..++++ ++|+..|++||.+ .|
T Consensus 14 r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------dP 77 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------DP 77 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CT
T ss_pred HHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------Cc
Confidence 346789999999999988 677788999999999999875 4888888888887 57
Q ss_pred hhHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHH
Q 000191 975 DTMKSYGDLAVFYYRLQ-----------HTELALKYVKRALYL 1006 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lG-----------dyeeALey~~kALeL 1006 (1888)
....+|++||.+|..+| ++++|+.+|++|+++
T Consensus 78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 78899999999999885 899999999999997
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.21 E-value=4.5e-06 Score=82.52 Aligned_cols=84 Identities=14% Similarity=-0.028 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 000191 910 EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR 989 (1888)
Q Consensus 910 dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~ 989 (1888)
++|+.+|++++.. .|....++..+|.+|+.+|++++|+.++++++.+ .|....++.+||.+|..
T Consensus 2 ~~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~ 65 (115)
T 2kat_A 2 QAITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQG 65 (115)
T ss_dssp CCHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHH
Confidence 3577788888764 4555679999999999999999999999999987 35567889999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHH
Q 000191 990 LQHTELALKYVKRALYLLHL 1009 (1888)
Q Consensus 990 lGdyeeALey~~kALeL~~k 1009 (1888)
+|++++|+.+|++++.+...
T Consensus 66 ~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 66 QGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp HTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccc
Confidence 99999999999999987643
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=2.3e-06 Score=92.23 Aligned_cols=87 Identities=13% Similarity=0.161 Sum_probs=75.8
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHhcCCCCh
Q 000191 947 HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT----------ELALKYVKRALYLLHLTCGPSHP 1016 (1888)
Q Consensus 947 ~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdy----------eeALey~~kALeL~~ki~G~dhP 1016 (1888)
+.+.|++|+..+++|+.+ +|....+|+++|.++..++++ ++|+.+|++|+.+ .|
T Consensus 14 r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------dP 77 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------DP 77 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CT
T ss_pred HHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------Cc
Confidence 456789999999999987 577889999999999999876 5999999999987 46
Q ss_pred hHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHH
Q 000191 1017 NTAATYINVAMMEEGLG-----------NVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1017 ~~a~a~~NLA~iy~~lG-----------~yeeAle~LekALei~ 1049 (1888)
....+|+++|.+|..+| ++++|+.+|++|+++.
T Consensus 78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 67788999999999875 8999999999999984
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.17 E-value=9.7e-06 Score=75.57 Aligned_cols=88 Identities=25% Similarity=0.391 Sum_probs=72.7
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
+.+....++.++|.+|...|++++|+.+|++++.+ .|....++.++|.+|..+|++++|+.+|++++++.
T Consensus 4 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-- 73 (91)
T 1na3_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-- 73 (91)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred cccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--
Confidence 34566788999999999999999999999999986 24446778999999999999999999999999873
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcC
Q 000191 1052 LLGPDHIQTAASYHAIAIALSLME 1075 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~lG 1075 (1888)
+ ....++.++|.++..+|
T Consensus 74 ---p---~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 74 ---P---NNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp ---T---TCHHHHHHHHHHHHHHC
T ss_pred ---C---CCHHHHHHHHHHHHhcC
Confidence 2 33567788898887654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.15 E-value=8.3e-05 Score=88.33 Aligned_cols=155 Identities=6% Similarity=0.024 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH----Hhc---CCHHHHHHHHHHHHH
Q 000191 893 GRQLLESSKTALDKG--KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVL----YHT---GDFNQATIYQQKALD 963 (1888)
Q Consensus 893 A~~LlelG~~~l~qG--d~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly----~~l---GdyeeAl~~~eKAL~ 963 (1888)
....+.++.++...| ++++++.++.++|.. +|....+++..+.++ ..+ +++++++.++.+++.
T Consensus 67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--------nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~ 138 (306)
T 3dra_A 67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALD--------NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLS 138 (306)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--------CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--------CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH
Confidence 344556677777888 999999999999986 566667888888888 667 899999999999998
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC------H
Q 000191 964 INERELGLDHPDTMKSYGDLAVFYYRLQHTE--LALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN------V 1035 (1888)
Q Consensus 964 I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdye--eALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~------y 1035 (1888)
. +|....++++.+.++...+.++ ++++++.++++. +|....++++.+.++..+++ +
T Consensus 139 ~--------~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--------d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 139 S--------DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--------DLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp H--------CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred h--------CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhccccchhhhH
Confidence 6 6777899999999999999998 999999999975 56667889999999999987 8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHH
Q 000191 1036 HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPL 1079 (1888)
Q Consensus 1036 eeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdyde 1079 (1888)
+++++++++++.+. +....+++.++.++...|+...
T Consensus 203 ~eEl~~~~~aI~~~--------p~n~SaW~y~~~ll~~~~~~~~ 238 (306)
T 3dra_A 203 DEELNYVKDKIVKC--------PQNPSTWNYLLGIHERFDRSIT 238 (306)
T ss_dssp HHHHHHHHHHHHHC--------SSCHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHhC--------CCCccHHHHHHHHHHhcCCChH
Confidence 99999999998762 2233455555666666665433
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=1.3e-05 Score=83.36 Aligned_cols=110 Identities=19% Similarity=0.191 Sum_probs=93.0
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 000191 907 GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVF 986 (1888)
Q Consensus 907 Gd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~l 986 (1888)
+++++|+.+|+++.+. .++. ++ ||.+|...+..++|+.+|++|... ....++++||.+
T Consensus 9 ~d~~~A~~~~~~aa~~-------g~~~---a~--lg~~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~ 66 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-------NEMF---GC--LSLVSNSQINKQKLFQYLSKACEL----------NSGNGCRFLGDF 66 (138)
T ss_dssp HHHHHHHHHHHHHHHT-------TCTT---HH--HHHHTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-------CCHh---hh--HHHHHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHHHH
Confidence 4688999999999765 2333 22 999999999999999999999874 246789999999
Q ss_pred HHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Q 000191 987 YYR----LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 987 y~~----lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~----lG~yeeAle~LekALei 1048 (1888)
|.. .+++++|+.+|++|.+. .+ ..++++||.+|.. .+++++|+.+|++|.+.
T Consensus 67 y~~G~g~~~d~~~A~~~~~~Aa~~-------g~---~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 67 YENGKYVKKDLRKAAQYYSKACGL-------ND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHcCCCCCccHHHHHHHHHHHHcC-------CC---HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 999 89999999999999863 23 4678899999999 99999999999999875
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.2e-05 Score=79.52 Aligned_cols=83 Identities=19% Similarity=0.141 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC
Q 000191 953 QATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL 1032 (1888)
Q Consensus 953 eAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~l 1032 (1888)
+|+.+|++++.. .|....++++||.+|...|++++|+.+|++++.+ .|....++.++|.+|..+
T Consensus 3 ~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~ 66 (115)
T 2kat_A 3 AITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQGQ 66 (115)
T ss_dssp CHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHc
Confidence 467777777764 3556788999999999999999999999999986 345567889999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 000191 1033 GNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 1033 G~yeeAle~LekALei~ek 1051 (1888)
|++++|+.+|++++++...
T Consensus 67 g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 67 GDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccc
Confidence 9999999999999998644
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=2e-05 Score=81.91 Aligned_cols=109 Identities=14% Similarity=0.113 Sum_probs=91.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 000191 949 GDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMM 1028 (1888)
Q Consensus 949 GdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~i 1028 (1888)
+++++|+.+|++|.+. | ++.. + ||.+|...+.+++|+.+|++|.+. .+ ..++++||.+
T Consensus 9 ~d~~~A~~~~~~aa~~-----g--~~~a---~--lg~~y~~g~~~~~A~~~~~~Aa~~-------g~---~~a~~~Lg~~ 66 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-----N--EMFG---C--LSLVSNSQINKQKLFQYLSKACEL-------NS---GNGCRFLGDF 66 (138)
T ss_dssp HHHHHHHHHHHHHHHT-----T--CTTH---H--HHHHTCTTSCHHHHHHHHHHHHHT-------TC---HHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-----C--CHhh---h--HHHHHHcCCCHHHHHHHHHHHHcC-------CC---HHHHHHHHHH
Confidence 4678999999999864 2 3322 2 999999999999999999999873 23 4678999999
Q ss_pred HHH----CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHH
Q 000191 1029 EEG----LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL----MEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1029 y~~----lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~----lGdydeAle~lqkALe 1089 (1888)
|.. .+++++|+.+|++|.+. ....++++||.+|.. .+++++|+.+|++|.+
T Consensus 67 y~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 67 YENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHcCCCCCccHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 998 89999999999999864 135678899999999 8999999999999975
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.00 E-value=2.2e-05 Score=76.52 Aligned_cols=72 Identities=15% Similarity=0.174 Sum_probs=62.3
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
+|....++++||.+|..+|++++|+.+|++++.+ .|....++.++|.+|..+|++++|+.+|++++++....
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 4566788999999999999999999999999986 24445689999999999999999999999999987543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.98 E-value=2.3e-05 Score=76.37 Aligned_cols=71 Identities=17% Similarity=0.173 Sum_probs=62.4
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000191 931 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 1009 (1888)
Q Consensus 931 hpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~k 1009 (1888)
+|....+++.||.+|+.+|++++|+.++++++.+ .|....+|.+||.+|..+|++++|+.+|++++.+...
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 3556778999999999999999999999999987 3556678999999999999999999999999998654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=2.6e-05 Score=100.03 Aligned_cols=154 Identities=7% Similarity=0.052 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHcCC----------hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcC--CHHHHHHHHHHH
Q 000191 894 RQLLESSKTALDKGK----------LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG--DFNQATIYQQKA 961 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd----------~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lG--dyeeAl~~~eKA 961 (1888)
..++.++.++...|+ +++|+.++.+++.. +|....+|+..+.++..+| ++++|+.++.++
T Consensus 64 taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--------~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~ 135 (567)
T 1dce_A 64 TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------NPKSYGTWHHRCWLLSRLPEPNWARELELCARF 135 (567)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHH
Confidence 345555666666666 89999999999876 6777889999999999999 779999999999
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC--------
Q 000191 962 LDINERELGLDHPDTMKSYGDLAVFYYRLQ-HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL-------- 1032 (1888)
Q Consensus 962 L~I~Er~lG~Dhp~ta~ay~nLA~ly~~lG-dyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~l-------- 1032 (1888)
+++ ++....++++.+.++...| .+++|++++.++++. +|....+|++.+.++..+
T Consensus 136 l~~--------d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--------~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 136 LEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--------NFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp HHH--------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--------TCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred Hhh--------ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--------CCCCccHHHHHHHHHHhhcccccccc
Confidence 997 5677889999999999999 899999999998863 566778899999998875
Q ss_pred ------CCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHH
Q 000191 1033 ------GNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPL 1079 (1888)
Q Consensus 1033 ------G~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdyde 1079 (1888)
+.+++|++++.+|+.+. + ....+++.++.++...+++.+
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~-----P---~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD-----P---NDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC-----S---SCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhC-----C---CCccHHHHHHHHHhcCCCccc
Confidence 56799999999999873 3 334567778888888887554
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00055 Score=82.13 Aligned_cols=150 Identities=7% Similarity=0.075 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 000191 909 LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD--FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVF 986 (1888)
Q Consensus 909 ~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGd--yeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~l 986 (1888)
+++++.++.+++.. +|....+++..+.++..+|+ +++++.++.+++.+ ++....++++.+.+
T Consensus 90 l~~EL~~~~~~L~~--------~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--------dprNy~AW~~R~~v 153 (331)
T 3dss_A 90 VKAELGFLESCLRV--------NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFV 153 (331)
T ss_dssp HHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Confidence 56677777777655 67777899999999999994 89999999999986 67778899999999
Q ss_pred HHHcCC-HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHH
Q 000191 987 YYRLQH-TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL--------------GNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 987 y~~lGd-yeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~l--------------G~yeeAle~LekALei~ek 1051 (1888)
+...|. ++++++++.+++.. +|....++++.+.++..+ +.++++++++.+++.+.
T Consensus 154 l~~l~~~~~eel~~~~~~I~~--------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-- 223 (331)
T 3dss_A 154 AAQAAVAPAEELAFTDSLITR--------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-- 223 (331)
T ss_dssp HHHTTCCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--
T ss_pred HHHhCcCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--
Confidence 999999 59999999999975 566778889999998877 45889999999998874
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHc-C----------ChHHHHHHHHHHHHH
Q 000191 1052 LLGPDHIQTAASYHAIAIALSLM-E----------AYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~l-G----------dydeAle~lqkALeI 1090 (1888)
++ ...+++.+..++... | .++++++++++.+++
T Consensus 224 ---P~---d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 224 ---PN---DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp ---TT---CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CC---CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 32 334444344344333 3 356666666666644
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0005 Score=81.71 Aligned_cols=155 Identities=9% Similarity=-0.078 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 936 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 1015 (1888)
Q Consensus 936 ~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dh 1015 (1888)
.++..+|.+|...|++++|+.++.+++.. +. ......++..++.+|..+|+.+.|.+.+++.... +
T Consensus 101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~-----~~-~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--------~ 166 (310)
T 3mv2_B 101 YELYLLATAQAILGDLDKSLETCVEGIDN-----DE-AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--------I 166 (310)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTS-----SC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------S
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----CC-CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------C
Confidence 34579999999999999999999988653 11 2467888999999999999999999999988664 2
Q ss_pred h------hHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000191 1016 P------NTAATYINVAMMEEGLG--NVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 1087 (1888)
Q Consensus 1016 P------~~a~a~~NLA~iy~~lG--~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkA 1087 (1888)
| +...++..-|++....| ++++|..+|+++.+.+ ++ ......+++ ++..+|++++|...++..
T Consensus 167 ~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~-----p~-~~~~~lLln---~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 167 EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF-----PT-WKTQLGLLN---LHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS-----CS-HHHHHHHHH---HHHHHTCHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC-----CC-cccHHHHHH---HHHHcCCHHHHHHHHHHH
Confidence 3 23333333455566666 9999999999965432 11 112233333 899999999999999866
Q ss_pred HHHHHH-----hcCCCCHHHHHHHHHHHHHH
Q 000191 1088 LQILRA-----KLGPDDLRTQDAAAWLEYFE 1113 (1888)
Q Consensus 1088 LeI~kk-----~LG~dh~~tl~a~~~La~L~ 1113 (1888)
++.+-. ...++++.++.....+.+..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~l 268 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQ 268 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHh
Confidence 655322 11366776665544444443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0002 Score=86.77 Aligned_cols=143 Identities=13% Similarity=-0.057 Sum_probs=105.6
Q ss_pred ccHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCH----HHHHHHHHH
Q 000191 888 CSSADGRQLLESSKTALDKGK---LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDF----NQATIYQQK 960 (1888)
Q Consensus 888 ~~s~~A~~LlelG~~~l~qGd---~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdy----eeAl~~~eK 960 (1888)
+....|..++-.|..++..+. +.+|+.+|++|+++ +|..+.++..++.+|.....+ ......+..
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~ 262 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNT 262 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHH
Confidence 344467788888888887765 57899999999988 688788888888877632111 122233334
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 000191 961 ALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALR 1040 (1888)
Q Consensus 961 AL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle 1040 (1888)
++..... -...+....+|.-+|..+...|++++|+.++++|+.+- +. ...|..+|.++...|++++|++
T Consensus 263 a~~a~~a--~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--------~s-~~a~~llG~~~~~~G~~~eA~e 331 (372)
T 3ly7_A 263 EIDNIVT--LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--------MS-WLNYVLLGKVYEMKGMNREAAD 331 (372)
T ss_dssp HHHHHHT--CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------CC-HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHh--cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--------CC-HHHHHHHHHHHHHCCCHHHHHH
Confidence 4442211 12235667788889999999999999999999999972 23 4567789999999999999999
Q ss_pred HHHHHHHHH
Q 000191 1041 YLHKALKCN 1049 (1888)
Q Consensus 1041 ~LekALei~ 1049 (1888)
.|++|+.+.
T Consensus 332 ~~~~AlrL~ 340 (372)
T 3ly7_A 332 AYLTAFNLR 340 (372)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 999999883
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.77 E-value=4.7e-05 Score=72.77 Aligned_cols=87 Identities=21% Similarity=0.327 Sum_probs=67.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000191 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAG-AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 974 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~-ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp 974 (1888)
.+..|..++..|++++|+.+|++++.. +|.... ++.++|.+|..+|++++|+.+|++++.+ . |
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~---p 66 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL-----N---P 66 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----C---T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----C---C
Confidence 356788889999999999999999886 445556 8999999999999999999999999987 2 3
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
....++.+ +.+.+|+.+|++++.+
T Consensus 67 ~~~~~~~~--------~~~~~a~~~~~~~~~~ 90 (99)
T 2kc7_A 67 DSPALQAR--------KMVMDILNFYNKDMYN 90 (99)
T ss_dssp TSTHHHHH--------HHHHHHHHHHCCTTHH
T ss_pred CcHHHHHH--------HHHHHHHHHHHHHhcc
Confidence 33333322 5567777777777655
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.72 E-value=5.9e-05 Score=72.11 Aligned_cols=87 Identities=21% Similarity=0.203 Sum_probs=67.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000191 939 SLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK-SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN 1017 (1888)
Q Consensus 939 ~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~-ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~ 1017 (1888)
..+|.++...|++++|+.++++++.+ +|.... ++.++|.+|..+|++++|+.+|++++.+ .++++.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~ 70 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL-----NPDSPA 70 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcHH
Confidence 56789999999999999999999986 355566 8999999999999999999999999986 333332
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 1018 TAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1018 ~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
++.+ +.+.+|+.+|++++...
T Consensus 71 ---~~~~--------~~~~~a~~~~~~~~~~~ 91 (99)
T 2kc7_A 71 ---LQAR--------KMVMDILNFYNKDMYNQ 91 (99)
T ss_dssp ---HHHH--------HHHHHHHHHHCCTTHHH
T ss_pred ---HHHH--------HHHHHHHHHHHHHhccC
Confidence 2222 45566777777666554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0025 Score=83.52 Aligned_cols=245 Identities=8% Similarity=-0.070 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 000191 911 DAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQAT-IYQQKALDINERELGLDHPDTMKSYGDLAVFYYR 989 (1888)
Q Consensus 911 EAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl-~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~ 989 (1888)
.....|++||.. .|....+|...|..+...|+.++|. ..|++|+..+ |.....+..++.++..
T Consensus 327 Rv~~~Ye~aL~~--------~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~--------P~s~~Lwl~~a~~ee~ 390 (679)
T 4e6h_A 327 RMTYVYMQAAQH--------VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI--------PNSAVLAFSLSEQYEL 390 (679)
T ss_dssp HHHHHHHHHHHH--------TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--------cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHH
Confidence 345678888876 3445678899999999999999997 9999998752 4455667889999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhc------CCC--------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 990 LQHTELALKYVKRALYLLHLTC------GPS--------HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 1055 (1888)
Q Consensus 990 lGdyeeALey~~kALeL~~ki~------G~d--------hP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~ 1055 (1888)
.|++++|...|++++......+ .+. +.....++...+.+..+.|..+.|...|.+|++... .
T Consensus 391 ~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~----~ 466 (679)
T 4e6h_A 391 NTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK----L 466 (679)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG----G
T ss_pred hCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC----C
Confidence 9999999999999998642111 011 012445677778888888999999999999987521 1
Q ss_pred CcHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhh
Q 000191 1056 DHIQTAASYHAIAIALSLME-AYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASI 1134 (1888)
Q Consensus 1056 d~~~tA~al~nLA~ay~~lG-dydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~ 1134 (1888)
. ...++...|.+....+ +++.|...|+.+++.+ ++++.....+..+ ....+..+.+.++.+.+.....
T Consensus 467 ~---~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~-----p~~~~~w~~y~~f-e~~~~~~~~AR~lferal~~~~-- 535 (679)
T 4e6h_A 467 V---TPDIYLENAYIEYHISKDTKTACKVLELGLKYF-----ATDGEYINKYLDF-LIYVNEESQVKSLFESSIDKIS-- 535 (679)
T ss_dssp S---CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-----TTCHHHHHHHHHH-HHHHTCHHHHHHHHHHHTTTSS--
T ss_pred C---ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-----CCchHHHHHHHHH-HHhCCCHHHHHHHHHHHHHhcC--
Confidence 1 1233445566665554 5899999999999865 3444433222211 1123445556665554332211
Q ss_pred hhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhccccCCCCCCCCCCcchhhhhccc
Q 000191 1135 ASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDNNLTSPDGSSKEVLRESS 1197 (1888)
Q Consensus 1135 as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~q~~~~a~~eIa~LEikyet~ 1197 (1888)
+......++..........|+.+.+...++++++....- ..+..+-.+|...
T Consensus 536 ---~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~--------~~~~~f~~ry~~~ 587 (679)
T 4e6h_A 536 ---DSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV--------NKLEEFTNKYKVL 587 (679)
T ss_dssp ---STTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC--------CHHHHHHHHTCBT
T ss_pred ---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------cHHHHHHHHhcCC
Confidence 012345677788888888999999999999999887642 3555555555544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00066 Score=67.12 Aligned_cols=83 Identities=19% Similarity=0.302 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..++.+|..++.+|+|..|+.+|++|+.....-. ........++..||.+|+.+|+++.|+.++++|+.+ .
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~-~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l-----~-- 76 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGE-ISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-----D-- 76 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-CCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C--
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccC-CCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----C--
Confidence 56788999999999999999999999998864321 012345688999999999999999999999999987 3
Q ss_pred ChhhHHHHHHHH
Q 000191 973 HPDTMKSYGDLA 984 (1888)
Q Consensus 973 hp~ta~ay~nLA 984 (1888)
|....+..|++
T Consensus 77 -P~~~~~~~n~~ 87 (104)
T 2v5f_A 77 -PEHQRANGNLK 87 (104)
T ss_dssp -TTCHHHHHHHH
T ss_pred -CCCHHHHhhHH
Confidence 44445566666
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.014 Score=71.45 Aligned_cols=189 Identities=11% Similarity=0.021 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH-TGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~-lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
..++++|..|..+|++++-.+++......+..+ ....++.....|-..+.. -+..+.-+..+.++++.+...
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~---- 92 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSI---SKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE---- 92 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGS---CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH----
Confidence 568889999999999999888887766554433 123345555555544443 355666777888888887641
Q ss_pred ChhhHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000191 973 HPDTMK--SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 973 hp~ta~--ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
...... .-..||.+|+..|+|.+|++.+.+.+.-+... .+......++.....+|..++++.++..+|.+|..+..
T Consensus 93 ~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~--dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ 170 (394)
T 3txn_A 93 KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL--DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTAN 170 (394)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS--SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc
Confidence 222333 34589999999999999999999999877653 23456788898999999999999999999999998876
Q ss_pred HhcCCCcHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHH
Q 000191 1051 RLLGPDHIQTAASYHAIAIALS-LMEAYPLSVQHEQTTLQILR 1092 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~ay~-~lGdydeAle~lqkALeI~k 1092 (1888)
..+ .+....+.+...-|.++. ..++|..|..+|-+|+.-|.
T Consensus 171 ai~-~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 171 AIY-CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HSC-CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred cCC-CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 543 222245566666788888 79999999999998876554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0016 Score=64.34 Aligned_cols=87 Identities=11% Similarity=0.142 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 000191 1019 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPD 1098 (1888)
Q Consensus 1019 a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~d 1098 (1888)
+.-++.||..+...++|..|+.||++|++....-.. .......++.+||.+|..+|+++.|+.++++++.+ .|+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l-----~P~ 78 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-----DPE 78 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCC
Confidence 445678999999999999999999999998743211 12346688899999999999999999999999854 688
Q ss_pred CHHHHHHHHHHHH
Q 000191 1099 DLRTQDAAAWLEY 1111 (1888)
Q Consensus 1099 h~~tl~a~~~La~ 1111 (1888)
+........++..
T Consensus 79 ~~~~~~n~~~~~~ 91 (104)
T 2v5f_A 79 HQRANGNLKYFEY 91 (104)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHhhHHHHHH
Confidence 8776555544433
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0013 Score=79.37 Aligned_cols=152 Identities=11% Similarity=0.066 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHHHHHhcC
Q 000191 894 RQLLESSKTALDKG-KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT-G-DFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 894 ~~LlelG~~~l~qG-d~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~l-G-dyeeAl~~~eKAL~I~Er~lG 970 (1888)
...+.++.++...| .+++++.++.++|.. +|....+++..+.++..+ + ++++++.++.+++..
T Consensus 89 taWn~R~~iL~~l~~~l~eEL~~~~~~L~~--------nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~------ 154 (349)
T 3q7a_A 89 TVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--------NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP------ 154 (349)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--------TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS------
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh------
Confidence 34555666777778 599999999999865 677778999999999998 8 888888888888754
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC-------H
Q 000191 971 LDHPDTMKSYGDLAVFYYRLQHTE--------LALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN-------V 1035 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGdye--------eALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~-------y 1035 (1888)
++....++.+.+.++...+.++ ++++++.++++. +|....++++.+.++..+++ +
T Consensus 155 --dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--------dp~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 155 --DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--------DGRNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred --CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhccccccchHHH
Confidence 5777889999999999988888 999999999875 56677889999999999987 7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCCh
Q 000191 1036 HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAY 1077 (1888)
Q Consensus 1036 eeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdy 1077 (1888)
+++++++++++.+. +....+++.+..++...|+-
T Consensus 225 ~eELe~~~~aI~~~--------P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 225 QDELIYILKSIHLI--------PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCCC
Confidence 88999999888763 34456677777788777764
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0036 Score=75.93 Aligned_cols=121 Identities=11% Similarity=0.069 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 000191 951 FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT----ELALKYVKRALYLLHLTCGPSHPNTAATYINVA 1026 (1888)
Q Consensus 951 yeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdy----eeALey~~kALeL~~ki~G~dhP~~a~a~~NLA 1026 (1888)
+.+|+.+|++|+++ +|+.+.+|..++.+|.....+ .....-+.+++..... -...|..+.++.-+|
T Consensus 215 ~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a--~~~~~~~a~~~~ala 284 (372)
T 3ly7_A 215 LNRASELLGEIVQS--------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT--LPELNNLSIIYQIKA 284 (372)
T ss_dssp HHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT--CGGGTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh--cccCCcCHHHHHHHH
Confidence 47899999999987 688888888888877632211 2222333344442211 122344566777788
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1027 MMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1027 ~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
.++...|++++|+.++++|+.+. + + +..+..+|.++...|++++|+++|.+|+.+
T Consensus 285 l~~l~~gd~d~A~~~l~rAl~Ln-----~-s---~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 285 VSALVKGKTDESYQAINTGIDLE-----M-S---WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-----C-C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHhcC-----C-C---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 88888899999999999999983 2 2 456678899999999999999999999965
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.008 Score=78.72 Aligned_cols=174 Identities=13% Similarity=0.015 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHcCChHHHH-HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC--
Q 000191 894 RQLLESSKTALDKGKLEDAV-TYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG-- 970 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAi-e~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG-- 970 (1888)
...+..|..+...|+.++|. ..|++|+.. .|.....+..++.++...|+++.|...|++++........
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~--------~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~ 415 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQC--------IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAAL 415 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 34555567777889999997 999999865 2334456788899999999999999999999986421100
Q ss_pred -CCCh-----------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC-CHHH
Q 000191 971 -LDHP-----------DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG-NVHV 1037 (1888)
Q Consensus 971 -~Dhp-----------~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG-~yee 1037 (1888)
.+.| ....++...+.+..+.|+.+.|...|.+|+... +.. ...+|...|.+....+ +++.
T Consensus 416 ~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~----~~~---~~~lyi~~A~lE~~~~~d~e~ 488 (679)
T 4e6h_A 416 MEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK----KLV---TPDIYLENAYIEYHISKDTKT 488 (679)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG----GGS---CTHHHHHHHHHHHTTTSCCHH
T ss_pred hhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----CCC---ChHHHHHHHHHHHHhCCCHHH
Confidence 0001 234567888888889999999999999998741 111 1234555677766665 4999
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1038 ALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1038 Ale~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
|..+|+.+++.+ ++.+.. +...+......|+.+.|...|++|+..
T Consensus 489 Ar~ife~~Lk~~-----p~~~~~---w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 489 ACKVLELGLKYF-----ATDGEY---INKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHHHHHHHH-----TTCHHH---HHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHC-----CCchHH---HHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999976 333333 344567777889999999999988754
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.01 Score=69.59 Aligned_cols=106 Identities=18% Similarity=0.107 Sum_probs=77.9
Q ss_pred CCChhHHHHHHHHHHHHHh---c--CC------HHHHHHHHHHHHHHHHHhcCCCChh--hHHHHHHHHHHHHHc-----
Q 000191 929 PYHRMTAGAYSLLAVVLYH---T--GD------FNQATIYQQKALDINERELGLDHPD--TMKSYGDLAVFYYRL----- 990 (1888)
Q Consensus 929 ~dhpe~A~ay~~LA~ly~~---l--Gd------yeeAl~~~eKAL~I~Er~lG~Dhp~--ta~ay~nLA~ly~~l----- 990 (1888)
..++..+..++++|.++.. . |+ ...|...+++|+++ +|. ...+|..||.+|...
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~g 217 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFG 217 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTT
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccC
Confidence 3456666777777766533 1 32 35566666666666 344 456999999999995
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHH
Q 000191 991 QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG-LGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 991 GdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~-lG~yeeAle~LekALei~ 1049 (1888)
|+.++|.++|++|+++. +++ .+.+++..|..|.. +|++++|.+++++|+..-
T Consensus 218 Gd~ekA~~~ferAL~Ln-----P~~--~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 218 GGMEKAHTAFEHLTRYC-----SAH--DPDHHITYADALCIPLNNRAGFDEALDRALAID 270 (301)
T ss_dssp CCHHHHHHHHHHHHHHC-----CTT--CSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhC-----CCC--CchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 99999999999999972 222 14566678998887 599999999999999864
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.011 Score=63.99 Aligned_cols=109 Identities=13% Similarity=0.076 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC-
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHR-MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL- 971 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhp-e~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~- 971 (1888)
..+++..+.+++.|.|+.|+-+...++.+.+.--....+ ..+.++..+|.+++..++|..|..+|++||.+.+.+...
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 356777788889999999999999999886542111123 347789999999999999999999999999987643211
Q ss_pred ----------------CChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000191 972 ----------------DHPDTMKSYGDLAVFYYRLQHTELALKYVKR 1002 (1888)
Q Consensus 972 ----------------Dhp~ta~ay~nLA~ly~~lGdyeeALey~~k 1002 (1888)
+-+......+.+|.||..++++++|+..++.
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 1112235778899999999999999987654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0088 Score=58.44 Aligned_cols=83 Identities=13% Similarity=0.073 Sum_probs=66.0
Q ss_pred hhHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000191 932 RMTAGAYSLLAVVLYHTGD---FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH 1008 (1888)
Q Consensus 932 pe~A~ay~~LA~ly~~lGd---yeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ 1008 (1888)
|..+..+..+|.+++..++ .++|..++++|+.+ +|....++..||..++..|+|++|+.++++++..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~-- 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS-- 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Confidence 4446688899999987776 79999999999997 6788899999999999999999999999999874
Q ss_pred HhcCCCChhHHHHHHHHHH
Q 000191 1009 LTCGPSHPNTAATYINVAM 1027 (1888)
Q Consensus 1009 ki~G~dhP~~a~a~~NLA~ 1027 (1888)
.+..|....+...+..
T Consensus 73 ---~p~~~~~~~i~~~I~~ 88 (93)
T 3bee_A 73 ---NDPNLDRVTIIESINK 88 (93)
T ss_dssp ---CCTTCCHHHHHHHHHH
T ss_pred ---CCCCccHHHHHHHHHH
Confidence 2334554444444443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.018 Score=62.30 Aligned_cols=126 Identities=13% Similarity=0.007 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-
Q 000191 937 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP-DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS- 1014 (1888)
Q Consensus 937 ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp-~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~d- 1014 (1888)
++..-...++..|.|+.|+.+...++.+.+.....-.+ ....++..+|..++..++|..|+.+|++||.+.+.+....
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45555667788899999999999999987652211122 3457889999999999999999999999999887532111
Q ss_pred ----------------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 000191 1015 ----------------HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIAL 1071 (1888)
Q Consensus 1015 ----------------hP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay 1071 (1888)
-+.-..+.+.+|.||..++++++|+..++.. +....+..+...||.+|
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I---------p~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI---------PSRQRTPKINMLLANLY 165 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS---------CGGGCCHHHHHHHHHHC
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC---------CchhcCHHHHHHHHHHh
Confidence 1122467889999999999999999987632 11222444555566665
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.018 Score=72.85 Aligned_cols=160 Identities=13% Similarity=0.049 Sum_probs=114.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHHHHHhcCC
Q 000191 901 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD---------FNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 901 ~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGd---------yeeAl~~~eKAL~I~Er~lG~ 971 (1888)
..|...|++++|+.+|.+.... | ..|. ..+|+.|-.++...+. .++|..+|++.... |.
T Consensus 34 d~c~k~G~~~~A~~lf~~M~~~-----G-v~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~-----G~ 101 (501)
T 4g26_A 34 DMCSKKGDVLEALRLYDEARRN-----G-VQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD-----KV 101 (501)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHH-----T-CCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT-----TC
T ss_pred HHHHhCCCHHHHHHHHHHHHHc-----C-CCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh-----CC
Confidence 5667899999999999998764 2 2333 3456666666655443 56677776654331 22
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
.| ...+|+.|-..|...|++++|+++|++.... |- .|+ ..+|+.+-..|...|++++|.++|++..+.
T Consensus 102 -~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----g~-~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~--- 169 (501)
T 4g26_A 102 -VP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAF-----GI-QPR-LRSYGPALFGFCRKGDADKAYEVDAHMVES--- 169 (501)
T ss_dssp -CC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TC-CCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---
T ss_pred -CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCc-cceehHHHHHHHHCCCHHHHHHHHHHHHhc---
Confidence 23 3467889999999999999999999886542 22 243 456888888899999999999999876542
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000191 1052 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 1088 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkAL 1088 (1888)
|-. | ...+|..|-.+|...|+.++|.+++++-.
T Consensus 170 --G~~-P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 170 --EVV-P-EEPELAALLKVSMDTKNADKVYKTLQRLR 202 (501)
T ss_dssp --TCC-C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --CCC-C-CHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 211 1 33567788899999999999999987654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.052 Score=63.77 Aligned_cols=125 Identities=14% Similarity=0.080 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHHhc-----------------------CCCChhhHHHHHHHHHHHHH---c--CC------HHHH
Q 000191 951 FNQATIYQQKALDINEREL-----------------------GLDHPDTMKSYGDLAVFYYR---L--QH------TELA 996 (1888)
Q Consensus 951 yeeAl~~~eKAL~I~Er~l-----------------------G~Dhp~ta~ay~nLA~ly~~---l--Gd------yeeA 996 (1888)
+..|..+|.++.....+.+ ..-++..+..++.+|..... . |. ...|
T Consensus 103 ~~RA~~Ly~ra~~y~~raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A 182 (301)
T 3u64_A 103 YSRARKLYLRGARYALSSLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAA 182 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHH
Confidence 5566777777666544432 11234445556666655533 1 22 3677
Q ss_pred HHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 000191 997 LKYVKRALYLLHLTCGPSHPN--TAATYINVAMMEEGL-----GNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAI 1069 (1888)
Q Consensus 997 Ley~~kALeL~~ki~G~dhP~--~a~a~~NLA~iy~~l-----G~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ 1069 (1888)
...+++|+++ +|. ...+|..+|.+|... |+.++|..+|++||++. ++. ....++.+|.
T Consensus 183 ~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln-----P~~--~id~~v~YA~ 247 (301)
T 3u64_A 183 VMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC-----SAH--DPDHHITYAD 247 (301)
T ss_dssp HHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC-----CTT--CSHHHHHHHH
T ss_pred HHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC-----CCC--CchHHHHHHH
Confidence 7788888876 344 456889999999996 99999999999999985 322 1445666799
Q ss_pred HHHH-cCChHHHHHHHHHHHHH
Q 000191 1070 ALSL-MEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1070 ay~~-lGdydeAle~lqkALeI 1090 (1888)
.|+. +|++++|..++++|+++
T Consensus 248 ~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 248 ALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHhcCCHHHHHHHHHHHHcC
Confidence 8887 59999999999999864
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.013 Score=57.20 Aligned_cols=84 Identities=19% Similarity=0.095 Sum_probs=64.6
Q ss_pred hhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000191 974 PDTMKSYGDLAVFYYRLQH---TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~lGd---yeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
|.....+..+|.+++..++ .++|..++++|+.+ +|....++..+|.++...|+|++|+.+++++++..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~- 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN- 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC-
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 4456778888888877666 79999999999986 46667788889999999999999999999998753
Q ss_pred HhcCCCcHHHHHHHHHHHHH
Q 000191 1051 RLLGPDHIQTAASYHAIAIA 1070 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~a 1070 (1888)
+..+....+...++.+
T Consensus 74 ----p~~~~~~~i~~~I~~A 89 (93)
T 3bee_A 74 ----DPNLDRVTIIESINKA 89 (93)
T ss_dssp ----CTTCCHHHHHHHHHHH
T ss_pred ----CCCccHHHHHHHHHHH
Confidence 3344444444444443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.18 Score=61.84 Aligned_cols=159 Identities=11% Similarity=0.061 Sum_probs=114.4
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCChhHHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 000191 907 GKLEDAVTYGTKALAKLVAVCGPYHRMTAG--AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLA 984 (1888)
Q Consensus 907 Gd~dEAie~~eeAL~l~eqi~G~dhpe~A~--ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA 984 (1888)
+..+.-++++.++++.+..- ...... .-..||.+|+..|+|.+|+..+.+.+.-+.+. .|.......|..-.
T Consensus 73 ~~~~~~~~~~~~~~~~a~~~----~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~--dd~~~llev~lle~ 146 (394)
T 3txn_A 73 AGTGIEVQLCKDCIEWAKQE----KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL--DDKNLLVEVQLLES 146 (394)
T ss_dssp CCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS--SCTHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHH
Confidence 44566677777777765532 233333 33489999999999999999999998887652 34556778899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 000191 985 VFYYRLQHTELALKYVKRALYLLHLTCGPSHPN-TAATYINVAMMEE-GLGNVHVALRYLHKALKCNQRLLGPDHIQTAA 1062 (1888)
Q Consensus 985 ~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~-~a~a~~NLA~iy~-~lG~yeeAle~LekALei~ek~~G~d~~~tA~ 1062 (1888)
.+|+.++++.++..+|.+|..+...++ .||. .+.+...-|.++. ..++|..|..+|-+|++-+... ..+....
T Consensus 147 ~~~~~~~n~~k~k~~l~~a~~~~~ai~--~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~---~~~~~~~ 221 (394)
T 3txn_A 147 KTYHALSNLPKARAALTSARTTANAIY--CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSV---DSVKALT 221 (394)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTT---CHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhhccCC--CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccccc---ccHHHHH
Confidence 999999999999999999999877653 4565 4555666678888 8999999999999997665322 2333333
Q ss_pred HHHHHHHHHHHcCC
Q 000191 1063 SYHAIAIALSLMEA 1076 (1888)
Q Consensus 1063 al~nLA~ay~~lGd 1076 (1888)
++..++.+-...++
T Consensus 222 ~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 222 SLKYMLLCKIMLGQ 235 (394)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCC
Confidence 33334444444454
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.053 Score=58.03 Aligned_cols=67 Identities=25% Similarity=0.227 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 933 MTAGAYSLLAVVLYHTG---DFNQATIYQQKALDINERELGLDHP-DTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 933 e~A~ay~~LA~ly~~lG---dyeeAl~~~eKAL~I~Er~lG~Dhp-~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
....+.+++|+++.+.. +.++++.++++.+.. +.| ....++++||..|+++|+|++|++|++++|++
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34578999999999988 666888888887764 234 55789999999999999999999999999986
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.055 Score=57.86 Aligned_cols=79 Identities=11% Similarity=0.108 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 000191 1017 NTAATYINVAMMEEGLG---NVHVALRYLHKALKCNQRLLGPDHI-QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 1092 (1888)
Q Consensus 1017 ~~a~a~~NLA~iy~~lG---~yeeAle~LekALei~ek~~G~d~~-~tA~al~nLA~ay~~lGdydeAle~lqkALeI~k 1092 (1888)
....+.+++|+++.... +.++++.+|++.++.. .+ ....++++||..|+++|+|++|..++++++++
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-------~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i-- 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-------SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT-- 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-------CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-------CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--
Confidence 34678899999999988 6679999999888752 23 56789999999999999999999999999976
Q ss_pred HhcCCCCHHHHHHHH
Q 000191 1093 AKLGPDDLRTQDAAA 1107 (1888)
Q Consensus 1093 k~LG~dh~~tl~a~~ 1107 (1888)
.|++........
T Consensus 101 ---eP~n~QA~~Lk~ 112 (152)
T 1pc2_A 101 ---EPQNNQAKELER 112 (152)
T ss_dssp ---CTTCHHHHHHHH
T ss_pred ---CCCCHHHHHHHH
Confidence 577766544433
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.14 E-value=1 Score=55.97 Aligned_cols=115 Identities=14% Similarity=-0.034 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 000191 976 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS-HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~d-hP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G 1054 (1888)
.+.....||.+|...|++.+|...+..... ..+|.. .......+.....+|...++|..|..++.++........
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~---Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~- 211 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQV---ETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP- 211 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS-
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH---HHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC-
Confidence 445667899999999999999999888653 334443 234577788889999999999999999999865443331
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000191 1055 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 1094 (1888)
Q Consensus 1055 ~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~ 1094 (1888)
......+..+...|.++...++|.+|..+|.+++..+...
T Consensus 212 ~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~ 251 (445)
T 4b4t_P 212 KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIK 251 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccccc
Confidence 2223456777888999999999999999999998776543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=94.84 E-value=0.71 Score=58.26 Aligned_cols=130 Identities=14% Similarity=0.080 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHH
Q 000191 937 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH---------TELALKYVKRALYLL 1007 (1888)
Q Consensus 937 ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGd---------yeeALey~~kALeL~ 1007 (1888)
.++.+-..|.+.|++++|+.+|++.... |. .|+ ..+|+.|=.+|...+. +++|.++|.+...
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~-----Gv-~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~-- 98 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRN-----GV-QLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV-- 98 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHH-----TC-CCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CC-CCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH--
Confidence 3555557788999999999999987653 32 232 3456555555554443 5677777766543
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000191 1008 HLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 1087 (1888)
Q Consensus 1008 ~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkA 1087 (1888)
.| -.|+ ..+|+.+-..|...|++++|+.+|++..+. |-. + ...+|..|-..|...|+.++|.+.+++.
T Consensus 99 ---~G-~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----g~~-P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 99 ---DK-VVPN-EATFTNGARLAVAKDDPEMAFDMVKQMKAF-----GIQ-P-RLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp ---TT-CCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TCC-C-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---hC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-C-ccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 12 2344 357888899999999999999999876542 211 1 2456777788999999999888877643
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.55 E-value=0.85 Score=56.41 Aligned_cols=109 Identities=13% Similarity=0.058 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 933 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 1012 (1888)
Q Consensus 933 e~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G 1012 (1888)
++..++..||..|+..|++++|...|.++...+ .+. ...+..+..+..++...+++..|..++.+|..+... +
T Consensus 129 e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~---~~~--~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~--~ 201 (429)
T 4b4t_R 129 EQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKA---IST--GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK--G 201 (429)
T ss_dssp CCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHH---TCC--CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT--C
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CCh--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc--C
Confidence 455688999999999999999999999987654 233 346778888889999999999999999999877543 3
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000191 1013 PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 1013 ~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
.+...........|.++...++|.+|..+|.+++..
T Consensus 202 ~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 202 GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 333334455566788888999999999999887654
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.40 E-value=1.2 Score=55.13 Aligned_cols=109 Identities=10% Similarity=0.078 Sum_probs=85.7
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 000191 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G 1054 (1888)
....++..||.+|...|++++|+++|.++...+ .+.. ..+..+..+..++...++|..+..++.+|..+... +
T Consensus 129 e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~---~~~~--~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~--~ 201 (429)
T 4b4t_R 129 EQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKA---ISTG--AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK--G 201 (429)
T ss_dssp CCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHH---TCCC--SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT--C
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CChH--HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc--C
Confidence 445678899999999999999999999988754 2333 45777888888999999999999999999877644 2
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1055 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1055 ~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
.+...........|.++...++|..|..+|.+++..
T Consensus 202 ~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 202 GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 333334455556678888899999999999877644
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.01 E-value=1.9 Score=44.75 Aligned_cols=87 Identities=25% Similarity=0.132 Sum_probs=64.5
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHH
Q 000191 908 KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP-DTMKSYGDLAVF 986 (1888)
Q Consensus 908 d~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp-~ta~ay~nLA~l 986 (1888)
.+..+...|.+++.. |. ....+.+++|+++.+..+... .++++.+.+.++..++| ..-.+++.||..
T Consensus 16 ~l~~~~~~y~~e~~~-----~~---~s~~~~F~yAw~Lv~S~~~~d----~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg 83 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-----GS---VSKSTQFEYAWCLVRTRYNDD----IRKGIVLLEELLPKGSKEEQRDYVFYLAVG 83 (126)
T ss_dssp HHHHHHHHHHHHHHH-----SC---CCHHHHHHHHHHHTTSSSHHH----HHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-----CC---CcHHHHHHHHHHHHcCCCHHH----HHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 344555566665543 22 345688999999999877654 45666666666665545 566889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHH
Q 000191 987 YYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 987 y~~lGdyeeALey~~kALeL 1006 (1888)
++++|+|++|+.|+...|++
T Consensus 84 ~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 84 NYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHh
Confidence 99999999999999999986
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=92.98 E-value=20 Score=43.02 Aligned_cols=188 Identities=14% Similarity=0.087 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHcCCh---HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 895 QLLESSKTALDKGKL---EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 895 ~LlelG~~~l~qGd~---dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.....-+..+..|+| =||.+.|+.....+.+. ..+.+....++.=|..+...|++..|.++..-.++++++..-.
T Consensus 14 ~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~--k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~ 91 (336)
T 3lpz_A 14 RIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQ--GNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQR 91 (336)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCC
Confidence 333444667889999 78888888776665442 4556667778888899999999999999888888888774211
Q ss_pred CChhhHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHhcCC---CChhHHHHHHHHHHHHHHCCCHHHHHHHHH----
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTE-LALKYVKRALYLLHLTCGP---SHPNTAATYINVAMMEEGLGNVHVALRYLH---- 1043 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdye-eALey~~kALeL~~ki~G~---dhP~~a~a~~NLA~iy~~lG~yeeAle~Le---- 1043 (1888)
-.......|..++.....-+ .=..+..+|+.-..+ .|. .||. .+..+|.+|...+++.+|..+|-
T Consensus 92 ---~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~-~g~~~~Gdp~---LH~~ig~~~~~e~~~~~Ae~H~ilg~~ 164 (336)
T 3lpz_A 92 ---VDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKK-FGDYPAGDPE---LHHVVGTLYVEEGEFEAAEKHLVLGTK 164 (336)
T ss_dssp ---CCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHH-HSSCTTCCHH---HHHHHHHHHHHTTCHHHHHHHHTTSCT
T ss_pred ---CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhh-cCCCCCCCHH---HHHHHHHHHHccCCHHHHHHHHHhcCC
Confidence 11245556666666554322 224566777765554 342 3554 45668999999999999998872
Q ss_pred ---HHH-HHHHHhcCCCcHHHHHHHHHH-HHHHHHcCChHHHHHHHHHHHHHH
Q 000191 1044 ---KAL-KCNQRLLGPDHIQTAASYHAI-AIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1044 ---kAL-ei~ek~~G~d~~~tA~al~nL-A~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
+.+ ++..+......+.....+... -.-|...++...|...+..-.+.+
T Consensus 165 ~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l 217 (336)
T 3lpz_A 165 ESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSAL 217 (336)
T ss_dssp THHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 111 221111111122333333333 345678899999988776555444
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=92.93 E-value=5.6 Score=49.92 Aligned_cols=212 Identities=9% Similarity=-0.048 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 000191 910 EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR 989 (1888)
Q Consensus 910 dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~ 989 (1888)
......|++++... |.....|...+..+...|+.+.|...|++|+.. +.+... +...+.+
T Consensus 196 ~Rv~~~ye~al~~~--------p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~------P~~~~l---~~~y~~~--- 255 (493)
T 2uy1_A 196 SRMHFIHNYILDSF--------YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM------SDGMFL---SLYYGLV--- 255 (493)
T ss_dssp HHHHHHHHHHHHHT--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCSSHH---HHHHHHH---
T ss_pred HHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCcHHH---HHHHHhh---
Confidence 34566788877652 233568888899999999999999999999986 222222 1212221
Q ss_pred cCCHHHHHHHHHHHHHHH---HHhcC--CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 000191 990 LQHTELALKYVKRALYLL---HLTCG--PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASY 1064 (1888)
Q Consensus 990 lGdyeeALey~~kALeL~---~ki~G--~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al 1064 (1888)
.+.++. +.+....+ ....+ ..+.....++...+..+.+.+..+.|...|++| .. +.. ....+
T Consensus 256 -~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~------~~~--~~~v~ 322 (493)
T 2uy1_A 256 -MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN------EGV--GPHVF 322 (493)
T ss_dssp -TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT------SCC--CHHHH
T ss_pred -cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC------CCC--ChHHH
Confidence 111111 22222111 00000 012333456777777777788899999999988 21 111 23345
Q ss_pred HHHHHHHHHcC-ChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCchhhhhcCCccH
Q 000191 1065 HAIAIALSLME-AYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY-FESKAFEQQEAARNGTRKPDASIASKGHLSV 1142 (1888)
Q Consensus 1065 ~nLA~ay~~lG-dydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~-L~qka~e~AeAl~~~~~~~~~~~as~~~~sv 1142 (1888)
...|.+....+ +.+.|...++.+++.+ ++.+..... ++.. ...+..+.+.++...... +
T Consensus 323 i~~A~lE~~~~~d~~~ar~ife~al~~~-----~~~~~~~~~--yid~e~~~~~~~~aR~l~er~~k-----------~- 383 (493)
T 2uy1_A 323 IYCAFIEYYATGSRATPYNIFSSGLLKH-----PDSTLLKEE--FFLFLLRIGDEENARALFKRLEK-----------T- 383 (493)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHC-----TTCHHHHHH--HHHHHHHHTCHHHHHHHHHHSCC-----------B-
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHC-----CCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHH-----------H-
Confidence 45566655555 6999999999998743 344432111 1111 122333444444443310 1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 000191 1143 SDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 1173 (1888)
Q Consensus 1143 aelL~~Lg~~y~~qGdyeEAleyyeKALeL~ 1173 (1888)
..++..........|+.+.+...+++++...
T Consensus 384 ~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~ 414 (493)
T 2uy1_A 384 SRMWDSMIEYEFMVGSMELFRELVDQKMDAI 414 (493)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 2455555556677799999999999998744
|
| >3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A | Back alignment and structure |
|---|
Probab=92.91 E-value=0.15 Score=50.09 Aligned_cols=71 Identities=23% Similarity=0.313 Sum_probs=58.0
Q ss_pred cCeEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEe
Q 000191 22 LPVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLT 95 (1888)
Q Consensus 22 ~~~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lV 95 (1888)
.|..++|.||++.+..+....-++|+|.||++.|.+...++. ..--|.+ .|..|+|...+.+.+ |++|.|.
T Consensus 18 ~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~-~qQrLif--~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 18 GSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQP-NKIVLQK--GGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCG-GGEEEEE--TTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred CCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCH-HHEEEEe--CCEEccCcCCHHHcCCCCCCEEEEE
Confidence 467999999999888888777788999999999999988776 4445764 999999988888754 7888874
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=92.12 E-value=3.1 Score=52.27 Aligned_cols=164 Identities=10% Similarity=-0.027 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC--C
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG--L 971 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG--~ 971 (1888)
...+..+..+...|+.++|...|++|+.. +.... .+...+.. ...+ +....+.++..+.+...+ .
T Consensus 214 ~lW~~ya~~~~~~~~~~~ar~i~erAi~~------P~~~~---l~~~y~~~-~e~~---~~~~~l~~~~~~~~~~~~~~~ 280 (493)
T 2uy1_A 214 EVYFFYSEYLIGIGQKEKAKKVVERGIEM------SDGMF---LSLYYGLV-MDEE---AVYGDLKRKYSMGEAESAEKV 280 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCSSH---HHHHHHHH-TTCT---HHHHHHHHHTC----------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCcHH---HHHHHHhh-cchh---HHHHHHHHHHHhhccchhhhh
Confidence 33455567778899999999999999976 12222 12111211 0111 111111111111110000 0
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG-NVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG-~yeeAle~LekALei~e 1050 (1888)
.+......+...+.++.+.++.+.|...|.+| .. +. ....++...|.+....+ +.+.|...|+.+++.+
T Consensus 281 ~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~------~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~- 350 (493)
T 2uy1_A 281 FSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN------EG--VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH- 350 (493)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT------SC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC------CC--CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-
Confidence 12233466777888888888999999999998 21 11 12345555566666555 5999999999999853
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000191 1051 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 1087 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkA 1087 (1888)
++.+.. +...+......|+.+.|...|+++
T Consensus 351 ----~~~~~~---~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 351 ----PDSTLL---KEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp ----TTCHHH---HHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred ----CCCHHH---HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333433 333466677889999998888775
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.91 E-value=1.6 Score=54.24 Aligned_cols=113 Identities=10% Similarity=0.006 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH-PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 1012 (1888)
Q Consensus 934 ~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh-p~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G 1012 (1888)
.+.+...||.+|...|++.+|...+..... .+.|.++ ......+.....+|...+++.+|..++.++.......
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~---Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~-- 210 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQV---ETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN-- 210 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH---HHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc--
Confidence 567778899999999999999998887653 2344433 3456778888999999999999999999986544332
Q ss_pred CCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 1013 PSHPN-TAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 1013 ~dhP~-~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
..+|. .+..+...|.++...++|.+|-.+|.+++.....
T Consensus 211 ~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~ 250 (445)
T 4b4t_P 211 PKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI 250 (445)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence 33454 4667788899999999999999999999887644
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=91.38 E-value=28 Score=41.28 Aligned_cols=185 Identities=11% Similarity=-0.037 Sum_probs=119.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 000191 898 ESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM 977 (1888)
Q Consensus 898 elG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta 977 (1888)
..-+..+..|+|=||.+.|+-....+.+. ..+.+....++.-|..+...|++..|.++..-.++.+++.. .+-..
T Consensus 18 ~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~--~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~---~~~~~ 92 (312)
T 2wpv_A 18 QRFENKIKAGDYYEAHQTLRTIANRYVRS--KSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAE---VKVDD 92 (312)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CCCSH
T ss_pred HHHHHHhhccChHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcC---CCCCH
Confidence 33466678899999999998887766543 34556677788888899999999999999888888887742 12223
Q ss_pred HHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHhcCC---CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH----HHHH
Q 000191 978 KSYGDLAVFYYRLQHTE-LALKYVKRALYLLHLTCGP---SHPNTAATYINVAMMEEGLGNVHVALRYLHKA----LKCN 1049 (1888)
Q Consensus 978 ~ay~nLA~ly~~lGdye-eALey~~kALeL~~ki~G~---dhP~~a~a~~NLA~iy~~lG~yeeAle~LekA----Lei~ 1049 (1888)
.....|..++.....-+ .=.++..+|+....+. |. .|| ..+..+|..|...+++.+|..+|-.+ .+.+
T Consensus 93 ~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~-g~~~~Gdp---~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~ 168 (312)
T 2wpv_A 93 ISVARLVRLIAELDPSEPNLKDVITGMNNWSIKF-SEYKFGDP---YLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKY 168 (312)
T ss_dssp HHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHT-SSCTTCCH---HHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhc-CCCCCCCH---HHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHH
Confidence 44556666665543222 2246777777765554 33 355 45667899999999999999988311 1111
Q ss_pred ----HHhcCC---CcHHHHHHHHHHH-HHHHHcCChHHHHHHHHHHHHHH
Q 000191 1050 ----QRLLGP---DHIQTAASYHAIA-IALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1050 ----ek~~G~---d~~~tA~al~nLA-~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
.+.... ..+.....+...| .-|..+|+...|...+..-.+.+
T Consensus 169 a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~~ 218 (312)
T 2wpv_A 169 VDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLERF 218 (312)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 111111 2333444443333 34667899999988876555443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.22 E-value=1.9 Score=52.62 Aligned_cols=114 Identities=17% Similarity=-0.002 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC---CC-----------hhHHHHHHHHHHHHHhcCCHHHHHHHH
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP---YH-----------RMTAGAYSLLAVVLYHTGDFNQATIYQ 958 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~---dh-----------pe~A~ay~~LA~ly~~lGdyeeAl~~~ 958 (1888)
...+...|......|+.+.|...+.+|+.++.--+-. .. .....++..++.++...|++.+|+..+
T Consensus 115 f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l 194 (388)
T 2ff4_A 115 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL 194 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4555666666777899999999999999875311100 11 112345566788889999999999999
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 959 QKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 1014 (1888)
Q Consensus 959 eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~d 1014 (1888)
++++.. +|..-..|..|-.+|+..|+..+|++.|+++...+..-+|-+
T Consensus 195 ~~~~~~--------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~ 242 (388)
T 2ff4_A 195 EALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID 242 (388)
T ss_dssp HHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 888765 566666788888999999999999999999999877666654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=91.11 E-value=3.4 Score=42.77 Aligned_cols=71 Identities=14% Similarity=0.123 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP-NTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP-~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
....+.+++|+++....+... .++++.+++.++..+.| ..-..++.||..+.++|+|++|+.+++..|++-
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d----~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDD----IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHH----HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHcCCCHHH----HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 456788999999998777654 33555555555555546 567788999999999999999999999999874
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=90.95 E-value=4.2 Score=52.90 Aligned_cols=25 Identities=16% Similarity=0.050 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 000191 937 AYSLLAVVLYHTGDFNQATIYQQKA 961 (1888)
Q Consensus 937 ay~~LA~ly~~lGdyeeAl~~~eKA 961 (1888)
.|..||..+...|+++.|+..|.++
T Consensus 683 ~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 683 KWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4555555555555555555555443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=90.02 E-value=1.6 Score=46.63 Aligned_cols=104 Identities=18% Similarity=0.075 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhcCCH------HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000191 937 AYSLLAVVLYHTGDF------NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010 (1888)
Q Consensus 937 ay~~LA~ly~~lGdy------eeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki 1010 (1888)
.+..........|+. +.-++.|++|+....-.........+..+...|.+ ...++.++|...|+.++.+
T Consensus 15 ~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~---- 89 (161)
T 4h7y_A 15 DWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN---- 89 (161)
T ss_dssp HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH----
T ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH----
Confidence 344444445555777 66667777777653221111233455666777766 5669999999999999986
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 1011 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1011 ~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
|...+.++...|....++|+...|...+.+|+.++
T Consensus 90 ----hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 90 ----CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp ----CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ----hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 23338888889999999999999999999999864
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=89.80 E-value=1.9 Score=56.14 Aligned_cols=29 Identities=14% Similarity=0.005 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000191 977 MKSYGDLAVFYYRLQHTELALKYVKRALY 1005 (1888)
Q Consensus 977 a~ay~nLA~ly~~lGdyeeALey~~kALe 1005 (1888)
...+.+||..+...++++.|+++|.++-.
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 35778999999999999999999998643
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=89.07 E-value=1.1 Score=56.48 Aligned_cols=80 Identities=18% Similarity=0.189 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 1014 (1888)
Q Consensus 935 A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~d 1014 (1888)
-.++..||.+......+..|..+|.+|+.+ .|.....|+.||.++...|+.-+|+-||.+++.. .
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~-------~ 216 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-------K 216 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-------S
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc-------C
Confidence 357788999999999999999999999998 5888999999999999999999999999999853 1
Q ss_pred ChhHHHHHHHHHHHHH
Q 000191 1015 HPNTAATYINVAMMEE 1030 (1888)
Q Consensus 1015 hP~~a~a~~NLA~iy~ 1030 (1888)
.| ...+..||..++.
T Consensus 217 ~P-f~~a~~nL~~~f~ 231 (497)
T 1ya0_A 217 FP-FPAASTNLQKALS 231 (497)
T ss_dssp BC-CHHHHHHHHHHHH
T ss_pred CC-ChhHHHHHHHHHH
Confidence 22 2344555555554
|
| >2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A | Back alignment and structure |
|---|
Probab=88.45 E-value=0.76 Score=43.42 Aligned_cols=74 Identities=11% Similarity=0.209 Sum_probs=53.9
Q ss_pred cCeEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcC--CcccccccccccccCCCccCCccccccc---cCceeEEec
Q 000191 22 LPVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNT--ETCSITNFSLSHEIRGPRLKDAVDVAAL---KPCVLSLTE 96 (1888)
Q Consensus 22 ~~~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~--~Tc~~T~fsL~~~~~G~~L~d~~ei~~l---k~~~L~lVe 96 (1888)
+|..++|+|++.......+..-++++|.||++.|...- +-+.-....|.+ +|..|+|-..+.+. .|++|.|+-
T Consensus 2 ~~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~--~Gk~L~D~~tL~~~~i~~g~~i~l~~ 79 (85)
T 2wyq_A 2 IPMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY--AGKILSDDVPIRDYRIDEKNFVVVMV 79 (85)
T ss_dssp --CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEE--TTEECCTTSBGGGGCCCTTSEEEEEE
T ss_pred CCceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEE--CCEECcCCCCHHHcCCCCCCEEEEEE
Confidence 47789999999976554443335699999999999862 335556666764 99999997777775 378888875
Q ss_pred c
Q 000191 97 E 97 (1888)
Q Consensus 97 e 97 (1888)
-
T Consensus 80 ~ 80 (85)
T 2wyq_A 80 T 80 (85)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C | Back alignment and structure |
|---|
Probab=88.09 E-value=0.48 Score=46.58 Aligned_cols=73 Identities=12% Similarity=0.158 Sum_probs=55.6
Q ss_pred ccCeEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc---cCceeEEec
Q 000191 21 VLPVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL---KPCVLSLTE 96 (1888)
Q Consensus 21 ~~~~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l---k~~~L~lVe 96 (1888)
--+..++|+|+++....+.+..-.+++|.+|.+.+...... ......|.+ +|.+|+|-..+.++ .|++|.||-
T Consensus 17 ~~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gi-p~~~qrLif--~Gk~L~d~~tl~dy~i~~g~~I~l~~ 92 (97)
T 1wyw_B 17 KEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGV-PMNSLRFLF--EGQRIADNHTPKELGMEEEDVIEVYQ 92 (97)
T ss_dssp --CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTC-CGGGEEEEE--TTEECCTTCCHHHHTCCTTCEEEEEE
T ss_pred CCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCC-ChhhEEEEE--CCeEcCCCCCHHHCCCCCCCEEEEEE
Confidence 35678999999998776666555679999999999987664 345666765 99999998777764 378888874
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=87.63 E-value=4 Score=42.63 Aligned_cols=77 Identities=10% Similarity=0.079 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHCCCHH---HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 000191 1019 AATYINVAMMEEGLGNVH---VALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL 1095 (1888)
Q Consensus 1019 a~a~~NLA~iy~~lG~ye---eAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~L 1095 (1888)
..+.+++|+++....+.+ +++.+++..++. .....-.+++.||..+.++|+|+.|..+.+..+++
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~----- 107 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH----- 107 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-----
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-----
Confidence 477889999999887653 566666655542 22346788999999999999999999999988854
Q ss_pred CCCCHHHHHHHH
Q 000191 1096 GPDDLRTQDAAA 1107 (1888)
Q Consensus 1096 G~dh~~tl~a~~ 1107 (1888)
.|++.+......
T Consensus 108 eP~N~QA~~Lk~ 119 (134)
T 3o48_A 108 ERNNKQVGALKS 119 (134)
T ss_dssp CTTCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 567765544433
|
| >4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A | Back alignment and structure |
|---|
Probab=87.29 E-value=0.84 Score=43.77 Aligned_cols=72 Identities=15% Similarity=0.173 Sum_probs=53.8
Q ss_pred CeEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccc--ccCceeEEecc
Q 000191 23 PVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAA--LKPCVLSLTEE 97 (1888)
Q Consensus 23 ~~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~--lk~~~L~lVee 97 (1888)
|..++|+|++.......+..-++++|.+|++.|..... ..-....|.+ +|..|+|...+.+ |.|++|.||-.
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g-ip~~~qrLi~--~Gk~L~d~~tL~~~~i~g~~i~l~~~ 76 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVS-IPSEKQRLIY--QGRVLQDDKKLQEYNVGGKVIHLVER 76 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHT-CCGGGEEEEE--TTEECCTTSBGGGGTCTTEEEEEEEC
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhC-CCHHHEEEEE--CCeECCCCCCHHHcCCCCcEEEEEec
Confidence 56799999999876655544466999999999988653 3444455654 9999999776766 35899988853
|
| >2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.24 E-value=0.68 Score=45.97 Aligned_cols=72 Identities=11% Similarity=0.099 Sum_probs=50.9
Q ss_pred cCeEEEEEEEcCCCCc--eEEEccChhhHHHHHHHhhhc-CCcccccccccccccCCCccCCccccccc-----cCceeE
Q 000191 22 LPVVLDITVNLPDDTR--VILKGISTDRIIDVRRLLSVN-TETCSITNFSLSHEIRGPRLKDAVDVAAL-----KPCVLS 93 (1888)
Q Consensus 22 ~~~~~~itv~lP~~~~--~~~~~is~d~v~dvrq~L~~~-~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l-----k~~~L~ 93 (1888)
.+..++|+|++|.... +.+..-++++|.+|++.|.+. +.-..-...-|-+ +|..|+|-..|++. .|++|.
T Consensus 20 ~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy--~Gk~L~D~~tL~~y~~~I~~~~tih 97 (99)
T 2kdb_A 20 QGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVY--SGRLLPDHLQLKDILRKQDEYHMVH 97 (99)
T ss_dssp ---CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEE--TTEEECTTSBTHHHHTTTCSEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEE--CCEECCCCCCHHHHhcCCCCCCEEE
Confidence 3567999999998763 333334569999999999984 4443335555764 99999998878765 368888
Q ss_pred Ee
Q 000191 94 LT 95 (1888)
Q Consensus 94 lV 95 (1888)
||
T Consensus 98 Lv 99 (99)
T 2kdb_A 98 LV 99 (99)
T ss_dssp EC
T ss_pred eC
Confidence 86
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=86.93 E-value=3.4 Score=50.31 Aligned_cols=105 Identities=13% Similarity=-0.002 Sum_probs=76.6
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCC---CCh-----------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 987 YYRLQHTELALKYVKRALYLLHLTCGP---SHP-----------NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 987 y~~lGdyeeALey~~kALeL~~ki~G~---dhP-----------~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
....|+.+.|...+.+|+.+|.--+-. ..+ ....+...++..+...|++.+|+..++.++...
T Consensus 125 ~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~--- 201 (388)
T 2ff4_A 125 AAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH--- 201 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---
Confidence 344678888888888888876321101 111 112345567778889999999999999887652
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDD 1099 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh 1099 (1888)
|..-.++..|-.+|...|+..+|+..|+++...+.+.+|-+-
T Consensus 202 -----P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P 243 (388)
T 2ff4_A 202 -----PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP 243 (388)
T ss_dssp -----TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 333346777788999999999999999999999999888664
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=86.83 E-value=8.4 Score=41.76 Aligned_cols=98 Identities=13% Similarity=0.040 Sum_probs=72.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------H
Q 000191 938 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL----------L 1007 (1888)
Q Consensus 938 y~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL----------~ 1007 (1888)
...++.+++..|+|..|+-++. .-+++.+.+.-++||...++|.+|+..+...++- .
T Consensus 36 ~lL~~I~LyyngEY~R~Lf~L~-------------~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~ 102 (242)
T 3kae_A 36 RMLMSIVLYLNGEYTRALFHLH-------------KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDAR 102 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH-------------TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHH
T ss_pred HhhhhhhhhhcchHhHHHHHHH-------------hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccc
Confidence 4567888999999988776543 2456777777889999999999999999988831 1
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000191 1008 HLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 1008 ~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
...+--+..+--..++.+|.++...|+.++|+.++..+..+
T Consensus 103 ~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 103 IQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 11111122233445777999999999999999999887765
|
| >1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A* | Back alignment and structure |
|---|
Probab=85.91 E-value=20 Score=41.40 Aligned_cols=56 Identities=20% Similarity=0.170 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHH
Q 000191 994 ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG-LGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 994 eeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~-lG~yeeAle~LekALei~ 1049 (1888)
+.|+..|+.|+++....+.+.||..+....|.+..|.. +++.++|+.+.++|++-.
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A 208 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 208 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 57899999999999887899999998888899988776 689999998888877653
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=85.75 E-value=4.7 Score=43.14 Aligned_cols=97 Identities=12% Similarity=-0.048 Sum_probs=70.8
Q ss_pred HHHHHHcCCH------HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 000191 984 AVFYYRLQHT------ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 1057 (1888)
Q Consensus 984 A~ly~~lGdy------eeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~ 1057 (1888)
.......|+. ++-++.|++|+...--.........+..+...|.. ...++.++|.+.|+.++.+. +
T Consensus 20 l~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~h-K------ 91 (161)
T 4h7y_A 20 LLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANC-K------ 91 (161)
T ss_dssp HHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHC-T------
T ss_pred HHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHh-H------
Confidence 3334444776 67778888887753221112234567777777765 56699999999999999872 1
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000191 1058 IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1058 ~~tA~al~nLA~ay~~lGdydeAle~lqkALe 1089 (1888)
..+.++...|+.-.++|+...|...+.+|+.
T Consensus 92 -kFAKiwi~~AqFEiRqgnl~kARkILg~AiG 122 (161)
T 4h7y_A 92 -KFAFVHISFAQFELSQGNVKKSKQLLQKAVE 122 (161)
T ss_dssp -TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 1278888889999999999999999999985
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.64 E-value=4.8 Score=53.23 Aligned_cols=123 Identities=14% Similarity=0.003 Sum_probs=78.9
Q ss_pred cCC-hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhcC---CCC-----
Q 000191 906 KGK-LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVV---LYHTGDFNQATIYQQKALDINERELG---LDH----- 973 (1888)
Q Consensus 906 qGd-~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~l---y~~lGdyeeAl~~~eKAL~I~Er~lG---~Dh----- 973 (1888)
.|+ ++.|+.++++.... +|.... +...+.+ .....+--+|+.+..+++.-...... ..+
T Consensus 261 t~~~~~~a~~~le~L~~~--------~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKK--------DPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp CGGGHHHHHHHHHHHHHH--------CGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred cccHHHHHHHHHHHHHhh--------CCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 445 46688877775443 343322 2222222 22223445688888887754322111 111
Q ss_pred --hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 000191 974 --PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKA 1045 (1888)
Q Consensus 974 --p~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekA 1045 (1888)
+.....+.--+.++...|+|+.|+++.++|..+ -|.-..++..||.+|..+|+|+.|+-.+..+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 111223444588888999999999999999986 3667889999999999999999999877654
|
| >3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
Probab=85.00 E-value=1.3 Score=41.52 Aligned_cols=70 Identities=17% Similarity=0.144 Sum_probs=52.2
Q ss_pred eEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000191 24 VVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 24 ~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
+.++|+|+.+......+..-++++|.|+++.|..... .+-....|.+ +|..|+|...+.++. +++|.|+-
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~-i~~~~qrL~~--~g~~L~d~~tL~~~~i~~~~~l~l~~ 74 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG-IPPDQQRLIF--AGKQLEDGRTLSDYNIQKWSTLFLLL 74 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC-CCGGGCEEEE--TTEECCTTSBTGGGTCCTTCEEEEEC
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC-cChHHEEEEE--CCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 4589999999865554443456999999999998653 4445666765 999999988787753 68888874
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=84.76 E-value=4.4 Score=42.82 Aligned_cols=77 Identities=12% Similarity=0.085 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHHHCCCHH---HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000191 1017 NTAATYINVAMMEEGLGNVH---VALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 1093 (1888)
Q Consensus 1017 ~~a~a~~NLA~iy~~lG~ye---eAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk 1093 (1888)
-...+.+++|+++....+.+ +++.+++..++. ++ ...-.+++.||..++++|+|.+|..+.+..+++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-----~~--~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--- 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AE--SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--- 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-----CC--STHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT---
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----Cc--cchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---
Confidence 34677889999999887654 566666665542 12 245678999999999999999999999988854
Q ss_pred hcCCCCHHHHHH
Q 000191 1094 KLGPDDLRTQDA 1105 (1888)
Q Consensus 1094 ~LG~dh~~tl~a 1105 (1888)
.|++.+....
T Consensus 107 --eP~n~QA~~L 116 (144)
T 1y8m_A 107 --ERNNKQVGAL 116 (144)
T ss_dssp --CCCCHHHHHH
T ss_pred --CCCcHHHHHH
Confidence 6777665443
|
| >3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.23 E-value=1.6 Score=40.61 Aligned_cols=70 Identities=14% Similarity=0.096 Sum_probs=52.8
Q ss_pred eEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000191 24 VVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 24 ~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
..++|+|+++.+....+..-++++|.++++.|..... .+-....|.+ +|..|+|...+++.. |++|.||-
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g-ip~~~qrL~~--~G~~L~d~~tL~~~~i~~~~~l~l~~ 75 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG-VQDDLFWLTF--EGKPLEDQLPLGEYGLKPLSTVFMNL 75 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHT-CCGGGEEEEE--TTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcC-CCHHHEEEEE--CCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 3589999999876655544466999999999988654 3444556664 999999988888754 78888873
|
| >4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A | Back alignment and structure |
|---|
Probab=84.16 E-value=1.7 Score=43.01 Aligned_cols=75 Identities=15% Similarity=0.319 Sum_probs=51.1
Q ss_pred cccccCeEEEEEEEcCCCCceEE-Ecc-ChhhHHHHHHHh-hhcCCcccccccccccccCCCccCCcccccc--c-c-Cc
Q 000191 18 EEKVLPVVLDITVNLPDDTRVIL-KGI-STDRIIDVRRLL-SVNTETCSITNFSLSHEIRGPRLKDAVDVAA--L-K-PC 90 (1888)
Q Consensus 18 ~e~~~~~~~~itv~lP~~~~~~~-~~i-s~d~v~dvrq~L-~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~--l-k-~~ 90 (1888)
+.|..+..++|+|+++.+....+ ..+ ++++|.+|++.| ...+ -+.-..--|-+ +|..|+|-..|++ | + |+
T Consensus 12 ~~~~~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~-gip~~~QrLi~--~Gk~L~D~~tL~dy~I~~~g~ 88 (98)
T 4a20_A 12 DDKMDNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEK-ASHISEIKLLL--KGKVLHDNLFLSDLKVTPANS 88 (98)
T ss_dssp ------CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTS-CSCGGGEEEEE--TTEEECTTCBGGGSCCBTTBC
T ss_pred cccCCCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhc-CCChhhEEEEE--CCEECcCcCCHHHcCcCCCCC
Confidence 45567888999999998774333 334 569999999999 5543 45556666764 9999999877777 4 3 67
Q ss_pred eeEEe
Q 000191 91 VLSLT 95 (1888)
Q Consensus 91 ~L~lV 95 (1888)
+|.|+
T Consensus 89 ti~lm 93 (98)
T 4a20_A 89 TITVM 93 (98)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77665
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=84.12 E-value=28 Score=48.26 Aligned_cols=103 Identities=13% Similarity=-0.067 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHH-------------HHhc--CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000191 937 AYSLLAVVLYHTGDFNQATIYQQKALDIN-------------EREL--GLDHPDTMKSYGDLAVFYYRLQHTELALKYVK 1001 (1888)
Q Consensus 937 ay~~LA~ly~~lGdyeeAl~~~eKAL~I~-------------Er~l--G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~ 1001 (1888)
..+.+|++|...|++++|..+|++|-... .... ..........|..+..++...+.++.++++.+
T Consensus 844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~ 923 (1139)
T 4fhn_B 844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 923 (1139)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45889999999999999999999873211 0000 00112234567888889999999999999999
Q ss_pred HHHHHHHHhcCCCChhH-HHHHHHHHHHHHHCCCHHHHHHHHH
Q 000191 1002 RALYLLHLTCGPSHPNT-AATYINVAMMEEGLGNVHVALRYLH 1043 (1888)
Q Consensus 1002 kALeL~~ki~G~dhP~~-a~a~~NLA~iy~~lG~yeeAle~Le 1043 (1888)
.|+.. .+.+.+.. ...+.++=..+..+|+|++|...+-
T Consensus 924 lAi~~----~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 924 LADAS----KETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp HHHHH----CCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred HHHHh----ccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 99875 23344432 3357777778888899998877663
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.11 E-value=6.1 Score=52.25 Aligned_cols=86 Identities=12% Similarity=0.020 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHHHHHHhc---CCCC-------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 000191 992 HTELALKYVKRALYLLHLTC---GPSH-------PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTA 1061 (1888)
Q Consensus 992 dyeeALey~~kALeL~~ki~---G~dh-------P~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA 1061 (1888)
+--+|+..+.+++.-..... ...+ +.....+.-.+..+...|+|+-|+.+.++|+.+. |.-.
T Consensus 300 ~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a--------PseF 371 (754)
T 4gns_B 300 KELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA--------LDSF 371 (754)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SSCH
T ss_pred hhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC--------chhh
Confidence 34567778877775432211 1111 2223456666888889999999999999999885 4456
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHH
Q 000191 1062 ASYHAIAIALSLMEAYPLSVQHEQ 1085 (1888)
Q Consensus 1062 ~al~nLA~ay~~lGdydeAle~lq 1085 (1888)
.+++.||.+|..+|+|+.|+-.+.
T Consensus 372 ~tW~~La~vYi~l~d~e~ALLtLN 395 (754)
T 4gns_B 372 ESWYNLARCHIKKEEYEKALFAIN 395 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHh
Confidence 789999999999999999987654
|
| >3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B | Back alignment and structure |
|---|
Probab=83.66 E-value=1.6 Score=42.04 Aligned_cols=70 Identities=20% Similarity=0.216 Sum_probs=52.2
Q ss_pred CeEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEe
Q 000191 23 PVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLT 95 (1888)
Q Consensus 23 ~~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lV 95 (1888)
+..++|+|++..+....+..-.+++|.|+++.|..... ..-....|.+ +|..|+|...+.+.. |++|.||
T Consensus 15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g-ip~~~qrL~~--~Gk~L~D~~tL~~~gi~~g~~i~l~ 87 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEG-IPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLV 87 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC-CCGGGCEEEE--TTEECCTTCBTGGGTCCTTCEEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhC-CChhhEEEEE--CCeECCCcCcHHHCCCCCCCEEEEE
Confidence 45789999999775554443456999999999988654 3334455664 999999988887753 7888887
|
| >4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.62 E-value=1.6 Score=41.63 Aligned_cols=71 Identities=15% Similarity=0.174 Sum_probs=52.8
Q ss_pred CeEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccc--ccCceeEEec
Q 000191 23 PVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAA--LKPCVLSLTE 96 (1888)
Q Consensus 23 ~~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~--lk~~~L~lVe 96 (1888)
|..++|+|+++......+..-++++|.++++.|..... ..-...-|.+ +|..|+|...+.+ +.|++|.||.
T Consensus 15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g-ip~~~qrLi~--~Gk~L~D~~tL~~~~i~g~~i~lv~ 87 (88)
T 4eew_A 15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVS-IPSEKQRLIY--QGRVLQDDKKLQEYNVGGKVIHLVE 87 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHT-CCGGGEEEEE--TTEECCTTSBGGGGTCTTEEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhC-CCHHHEEEEE--CCEECCCCCcHHHcCCCCcEEEEEE
Confidence 56799999999776655443466999999999988654 3334445654 9999999777776 4589999874
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=83.02 E-value=14 Score=39.02 Aligned_cols=70 Identities=17% Similarity=0.108 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 933 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 933 e~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
....+.+++|+++....+... .++++.+.+.++..+....-.+++.||..++++|+|++|++|....|++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~d----i~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVND----ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHH----HHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHH----HHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 345788899999988876543 2344444444433222356688999999999999999999999999885
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.96 E-value=18 Score=39.62 Aligned_cols=103 Identities=14% Similarity=0.071 Sum_probs=64.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 000191 901 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSY 980 (1888)
Q Consensus 901 ~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay 980 (1888)
...++.|+++.|.++.++. +....|..||......|+++-|...|+++-. +
T Consensus 13 ~LAL~lg~l~~A~e~a~~l-------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------------~ 63 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL-------------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------------F 63 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH-------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------------H
T ss_pred HHHHhcCCHHHHHHHHHHh-------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------------H
Confidence 3446789999888776542 1235789999999999999999988877633 2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 000191 981 GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKA 1045 (1888)
Q Consensus 981 ~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekA 1045 (1888)
..|..+|...|+.+.-....+.|.. .+.. +....++..+|+++++++.|.++
T Consensus 64 ~~L~~Ly~~tg~~e~L~kla~iA~~-------~g~~------n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 64 DKLSFLYLVTGDVNKLSKMQNIAQT-------REDF------GSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH-------TTCH------HHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH-------CccH------HHHHHHHHHcCCHHHHHHHHHHC
Confidence 3455666777776554433333321 1111 11234456778888887777543
|
| >1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A | Back alignment and structure |
|---|
Probab=82.94 E-value=1.7 Score=39.71 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=50.5
Q ss_pred EEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc---cCceeEEec
Q 000191 26 LDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL---KPCVLSLTE 96 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l---k~~~L~lVe 96 (1888)
++|+|+++......+..-+.++|.|+++.|..... .+.....|.+ +|..|+|-..+.+. .|++|.|+-
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~-i~~~~q~L~~--~g~~L~d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG-IPPQQQRLIY--SGKQMNDEKTAADYKILGGSVLHLVL 71 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHC-CCGGGEEEEE--TTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHC-cChHHEEEEE--CCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 47899999776554443355999999999998654 4455666765 99999998777775 378888874
|
| >3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.87 E-value=1.6 Score=43.59 Aligned_cols=69 Identities=16% Similarity=0.224 Sum_probs=50.2
Q ss_pred EEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000191 25 VLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 25 ~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
+++|+|++..+....+..-.+++|.||++.|..... +.-...-|. ++|..|+|...|.++. |++|.||-
T Consensus 1 mm~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g-ip~~~QrLi--~~Gk~L~D~~tL~~~~i~~g~~i~lv~ 72 (106)
T 3m62_B 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSIS-CEESQIKLI--YSGKVLQDSKTVSECGLKDGDQVVFMV 72 (106)
T ss_dssp --CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTT-SCGGGCEEE--ETTEECCTTSBTTTTTCCTTCEEEEEC
T ss_pred CEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC-CChhhEEEE--ECCEECCCcCCHHHcCCCCCCEEEEEE
Confidence 368999998766554443356999999999999764 444455666 4999999987777753 78888874
|
| >4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.33 E-value=1.5 Score=43.06 Aligned_cols=70 Identities=19% Similarity=0.185 Sum_probs=52.5
Q ss_pred eEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000191 24 VVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 24 ~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
..++|+|+++......+..-++++|.|+++.|..... .+-....|.+ +|..|+|...|.++. |++|.||-
T Consensus 21 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g-ip~~~qrLi~--~Gk~L~D~~tL~~~~i~~g~~i~l~~ 93 (98)
T 4hcn_B 21 RPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG-IPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVL 93 (98)
T ss_dssp -CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC-CCGGGCEEEE--TTEECCTTCBSGGGTCCTTEEEEEEC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhC-CChhHEEEEE--CCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 3589999998766555544456999999999998654 4445566764 999999988888753 78888873
|
| >1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
Probab=82.25 E-value=2.5 Score=43.57 Aligned_cols=88 Identities=20% Similarity=0.292 Sum_probs=59.6
Q ss_pred CCCCCCc--cccccccccccccCeEEEEEEEcCCCCceEEEcc-ChhhHHHHHHHhhhcCCcccccccccccccCCCccC
Q 000191 3 PRNSRGK--AKNEKKKKEEKVLPVVLDITVNLPDDTRVILKGI-STDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLK 79 (1888)
Q Consensus 3 ~~~~~~~--~k~~~~kk~e~~~~~~~~itv~lP~~~~~~~~~i-s~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~ 79 (1888)
|+..||. ..|-...++| +..++|+|+.. .+.+.+.+ ..++|.||++.|..... +......|. ++|..|+
T Consensus 11 ~~~~~~~~~~~~s~~~~~~---~~~m~I~Vk~~--g~~~~l~v~~~~TV~~LK~~I~~~~g-ip~~~QrLi--~~Gk~L~ 82 (125)
T 1j8c_A 11 PRPSRGPAAAQGSAAAPAE---PKIIKVTVKTP--KEKEEFAVPENSSVQQFKEAISKRFK-SQTDQLVLI--FAGKILK 82 (125)
T ss_dssp CSSCCCSCCCCCSSSCCCC---CCCEEEEEECS--SCEEEEEECTTCCHHHHHHHHHHHHC-SCSSSEEEE--ETTEEES
T ss_pred CChhhCCcCCCCCCcccCC---CCcEEEEEEeC--CeEEEEEECCCCcHHHHHHHHHHHHC-cCcceEEEE--ECCEEcC
Confidence 4455554 3444444443 35799999998 33444455 45999999999998654 344555666 4999999
Q ss_pred Cccccccc---cCceeEEeccC
Q 000191 80 DAVDVAAL---KPCVLSLTEED 98 (1888)
Q Consensus 80 d~~ei~~l---k~~~L~lVeep 98 (1888)
|-..|.++ .|++|.||--+
T Consensus 83 D~~tL~dygI~~gstI~lv~~~ 104 (125)
T 1j8c_A 83 DQDTLIQHGIHDGLTVHLVIKR 104 (125)
T ss_dssp TTSCGGGTTCSSSEEEEEEEC-
T ss_pred CCCCHHHcCCCCCCEEEEEecc
Confidence 97777775 37999888643
|
| >2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.13 E-value=1.9 Score=40.18 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=51.3
Q ss_pred CeEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc---cCceeEEec
Q 000191 23 PVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL---KPCVLSLTE 96 (1888)
Q Consensus 23 ~~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l---k~~~L~lVe 96 (1888)
+..++|+|+++......+..-..++|.|+++.|..... .......|.+ +|..|+|-..+.+. .|++|.|+-
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~-i~~~~qrL~~--~gk~L~d~~tL~~~~i~~g~~i~l~~ 78 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLN-VPVRQQRLLF--KGKALADGKRLSDYSIGPNSKLNLVV 78 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTC-CCTTTCEEEE--TTEECCTTSBGGGGTCCSSBCCEEEC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC-cCHHHEEEEE--CCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 34689999988764443333355999999999998654 3445566764 99999997777775 378888774
|
| >3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I | Back alignment and structure |
|---|
Probab=82.09 E-value=2.1 Score=40.53 Aligned_cols=69 Identities=17% Similarity=0.168 Sum_probs=52.5
Q ss_pred eEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEe
Q 000191 24 VVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLT 95 (1888)
Q Consensus 24 ~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lV 95 (1888)
..++|+|+++......+..-++++|.|+++.|..... .+.....|.+ +|..|+|...+.++. |++|.|+
T Consensus 11 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g-ip~~~qrL~~--~G~~L~d~~tL~~~~i~~~~~i~l~ 82 (88)
T 3dbh_I 11 GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG-IPPQQQRLIY--SGKQMNDEKTAADYKILGGSVLHLV 82 (88)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC-CCGGGCCEEE--TTEECCTTSBGGGGTCCTTCEEEEC
T ss_pred CcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC-cCHHHEEEEE--CCeECCCCCcHHHcCCCCCCEEEEE
Confidence 4689999999766554444466999999999988654 4455566764 999999988888763 6888886
|
| >1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
Probab=81.82 E-value=1.3 Score=42.01 Aligned_cols=71 Identities=14% Similarity=0.165 Sum_probs=52.4
Q ss_pred CeEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc---cCceeEEec
Q 000191 23 PVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL---KPCVLSLTE 96 (1888)
Q Consensus 23 ~~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l---k~~~L~lVe 96 (1888)
|..++|+|+++......+..-..++|.||++.|..... .......|.+ +|..|+|-..+.+. .|++|.|+-
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g-i~~~~qrL~~--~Gk~L~d~~tL~~~~i~~g~~i~l~~ 78 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQG-LPKKQQQLEF--QGQVLQDWLGLGIYGIQDSDTLILSK 78 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTC-CCTTTEEEEE--TTEECCSSSBHHHHTCCTTEEEEEEE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhC-CChHHEEEEE--CCEEccCCCCHHHCCCCCCCEEEEEE
Confidence 56799999998764443333355999999999998764 4455666764 99999997777765 368888874
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=81.77 E-value=12 Score=40.72 Aligned_cols=97 Identities=11% Similarity=-0.015 Sum_probs=69.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------HH
Q 000191 981 GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC----------NQ 1050 (1888)
Q Consensus 981 ~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei----------~e 1050 (1888)
..++.+++..|+|..|+-++.. -.++.+.+.-+.||..+++|..|+..++..++- ..
T Consensus 37 lL~~I~LyyngEY~R~Lf~L~~-------------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~ 103 (242)
T 3kae_A 37 MLMSIVLYLNGEYTRALFHLHK-------------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARI 103 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT-------------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHH
T ss_pred hhhhhhhhhcchHhHHHHHHHh-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccc
Confidence 4567788889998887754322 134555666799999999999999999998831 11
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1051 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
..+--+....-.-+..+|.++.+.|+.++|+.++..++.+
T Consensus 104 ~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 104 QEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 1111122223345667899999999999999999988764
|
| >3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... | Back alignment and structure |
|---|
Probab=81.54 E-value=1.9 Score=39.42 Aligned_cols=68 Identities=18% Similarity=0.213 Sum_probs=50.1
Q ss_pred EEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc---cCceeEEec
Q 000191 26 LDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL---KPCVLSLTE 96 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l---k~~~L~lVe 96 (1888)
++|+|++++.....+..-++++|.|+++.|..... .......|.+ +|..|+|...+++. .|++|.|+-
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~-i~~~~q~L~~--~g~~L~d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG-IPPDQQRLIF--AGKQLEDGRTLSDYNIQRESTLHLVL 71 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC-CCGGGEEEEE--TTEECCTTCBTGGGTCCTTCEEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHC-cCHHHeEEEE--CCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 47899998775444443355999999999998654 3455666765 99999997777775 378888874
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=81.25 E-value=5.1 Score=41.88 Aligned_cols=65 Identities=11% Similarity=0.107 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000191 893 GRQLLESSKTALDKGKL---EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~---dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I 964 (1888)
....|+.|..+....+- .+++.+++..+.. .....-.|++.||..++++|+|++|..+.+..|.+
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 45566677777766543 3456665554432 22245689999999999999999999999988876
|
| >3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
Probab=81.20 E-value=1.3 Score=41.55 Aligned_cols=70 Identities=19% Similarity=0.178 Sum_probs=51.4
Q ss_pred eEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000191 24 VVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 24 ~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
+.++|+|+.+......+..-++++|.|+++.|..... .+.....|.+ +|..|+|...+.+.. +++|.|+-
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~-ip~~~qrL~~--~g~~L~d~~tL~~~~i~~~~~i~l~~ 74 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEG-IPPDQQRLIF--AGKQLEDGRTLSDYNIHNHSALYLLL 74 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHC-CCGGGEEEEE--TBEECCTTCBTTTTTCCTTCEEEEEE
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC-CCHHHEEEEE--CCeECCCCCCHHHCCCCCCCEEEEEE
Confidence 3578999999765554444466999999999998653 4455666765 999999988787753 68888874
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.08 E-value=2.4 Score=53.43 Aligned_cols=145 Identities=11% Similarity=0.073 Sum_probs=60.3
Q ss_pred HHHHcCChHHHHHHHHHHH--HHHHHhc-CCCChhHHHHHHHHHHHHHhcCCHHHHHHHH------HHHH-HHHHH-hcC
Q 000191 902 TALDKGKLEDAVTYGTKAL--AKLVAVC-GPYHRMTAGAYSLLAVVLYHTGDFNQATIYQ------QKAL-DINER-ELG 970 (1888)
Q Consensus 902 ~~l~qGd~dEAie~~eeAL--~l~eqi~-G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~------eKAL-~I~Er-~lG 970 (1888)
.+++++++++|..+....+ ....... -..+...+.+|+.++.+|...|+........ +..+ ..++. ++.
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 3456778888887776554 2221110 0124456788999999998888876643221 1111 11111 223
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 971 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
.|....+..++.|=..|...+.|++|..+..++.-. . ........+..++.+|.++.-+++|.+|.++|..|+..+
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP--~-~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLEYP--H-TDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSC--T-TTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCC--c-ccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 344455667777888899999999999998887421 0 001224567778889999999999999999999988643
|
| >2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B | Back alignment and structure |
|---|
Probab=81.08 E-value=1.5 Score=40.85 Aligned_cols=69 Identities=13% Similarity=0.195 Sum_probs=53.2
Q ss_pred EEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000191 25 VLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 25 ~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
.++|+|++.....+.+..-++++|.+|.+.+.+... .......|.+ +|..|+|-..+.++. |++|.|+-
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~g-i~~~~qrL~~--~G~~L~d~~tl~~~~i~~~~~i~l~~ 74 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG-VPMNSLRFLF--EGQRIADNHTPKELGMEEEDVIEVYQ 74 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHT-CCGGGEEEEE--TTEECCTTCCHHHHTCCTTEEEEEEE
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHC-CCcccEEEEE--CCEEeCCCCCHHHcCCCCCCEEEEEE
Confidence 489999999887666655567999999999998755 3445666764 999999987777653 68888874
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=80.61 E-value=4.2 Score=51.30 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000191 978 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 978 ~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
.++..||.+......+..|..||.+|+.+ .|.....|+.||.+....|+.-+|+-+|-++|..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~ 215 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence 56788999999999999999999999987 4777889999999999999999999999998854
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1888 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-12 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 7e-09 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-06 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 8e-04 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 2e-10 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 7e-10 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 2e-09 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 4e-06 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 4e-06 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 2e-04 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 3e-04 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 6e-06 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 7e-06 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 2e-04 | |
| d1sgoa_ | 139 | d.82.3.1 (A:) Hypothetical protein c14orf129, hspc | 8e-04 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 0.001 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.5 bits (166), Expect = 3e-12
Identities = 34/172 (19%), Positives = 62/172 (36%), Gaps = 32/172 (18%)
Query: 904 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 963
++G ++ A+ +A+ AY LA L G +A AL
Sbjct: 248 YEQGLIDLAIDTYRRAIE--------LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299
Query: 964 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYI 1023
P S +LA + E A++ ++AL + P AA +
Sbjct: 300 --------LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHS 343
Query: 1024 NVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLME 1075
N+A + + G + AL + +A++ + P A +Y + L M+
Sbjct: 344 NLASVLQQQGKLQEALMHYKEAIRIS-----PTF---ADAYSNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.8 bits (138), Expect = 7e-09
Identities = 37/215 (17%), Positives = 70/215 (32%), Gaps = 38/215 (17%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
+G++ A+ + KA+ AY L VL F++A +AL +
Sbjct: 181 AQGEIWLAIHHFEKAVTL--------DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 1024
P+ +G+LA YY +LA+ +RA+ L P+ Y N
Sbjct: 233 --------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--------QPHFPDAYCN 276
Query: 1025 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHE 1084
L N + +A C L + + +A +V+
Sbjct: 277 -------LANALKEKGSVAEAEDCYNTALRLCPTHADSLNN-LANIKREQGNIEEAVRLY 328
Query: 1085 QTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQ 1119
+ L++ P+ A + + ++
Sbjct: 329 RKALEV-----FPEFAAAHSNLASV-LQQQGKLQE 357
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (115), Expect = 4e-06
Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 16/97 (16%)
Query: 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQAT 955
+E + G E A + + + P + G LL+ + + +++
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQ-----EPDN---TGVLLLLSSIHFQCRRLDRSA 53
Query: 956 IYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH 992
+ A+ N P ++Y +L Y
Sbjct: 54 HFSTLAIKQN--------PLLAEAYSNLGNVYKERGQ 82
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.0 bits (110), Expect = 1e-05
Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 16/88 (18%)
Query: 941 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYV 1000
LA Y GDF A + + PD L+ +++ + + + +
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQE--------PDNTGVLLLLSSIHFQCRRLDRSAHFS 56
Query: 1001 KRALYLLHLTCGPSHPNTAATYINVAMM 1028
A+ +P A Y N+ +
Sbjct: 57 TLAIKQ--------NPLLAEAYSNLGNV 76
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.2 bits (108), Expect = 3e-05
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 16/91 (17%)
Query: 901 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQK 960
++G +E+AV KAL A A+S LA VL G +A ++ ++
Sbjct: 313 NIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKE 364
Query: 961 ALDINERELGLDHPDTMKSYGDLAVFYYRLQ 991
A+ I+ P +Y ++ +Q
Sbjct: 365 AIRIS--------PTFADAYSNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 8e-04
Identities = 12/93 (12%), Positives = 28/93 (30%), Gaps = 16/93 (17%)
Query: 982 DLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRY 1041
+LA Y+ E A ++ + P+ + ++ + + + +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQ--------EPDNTGVLLLLSSIHFQCRRLDRSAHF 55
Query: 1042 LHKALKCNQRLLGPDHIQTAASYHAIAIALSLM 1074
A+K N P A +Y +
Sbjct: 56 STLAIKQN-----PLL---AEAYSNLGNVYKER 80
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 62.2 bits (149), Expect = 2e-10
Identities = 22/163 (13%), Positives = 50/163 (30%), Gaps = 5/163 (3%)
Query: 903 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKAL 962
A++ G ++A AL +L + A S+L VL+ G+ ++ Q+
Sbjct: 22 AINDGNPDEAERLAKLALEELPPG---WFYSRIVATSVLGEVLHCKGELTRSLALMQQTE 78
Query: 963 DINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATY 1022
+ + + S + + + A + ++A L++ P
Sbjct: 79 QMARQ--HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLV 136
Query: 1023 INVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYH 1065
A + + A ++ +Q A
Sbjct: 137 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 60.7 bits (145), Expect = 7e-10
Identities = 20/190 (10%), Positives = 49/190 (25%), Gaps = 5/190 (2%)
Query: 933 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH 992
M A +L A V + G+ ++A + AL+ + + L +
Sbjct: 10 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPG---WFYSRIVATSVLGEVLHCKGE 66
Query: 993 TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052
+L +++ + + I + + G + A KA +
Sbjct: 67 LTRSLALMQQTEQMARQHD--VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ 124
Query: 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF 1112
A L + ++ +++L + L+
Sbjct: 125 HLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA 184
Query: 1113 ESKAFEQQEA 1122
+
Sbjct: 185 RGDLDNARSQ 194
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 59.2 bits (141), Expect = 2e-09
Identities = 23/165 (13%), Positives = 44/165 (26%), Gaps = 7/165 (4%)
Query: 928 GPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFY 987
+ + A + + TGD A + + ++ + ++A
Sbjct: 206 KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA----NNHFLQGQWRNIARAQ 261
Query: 988 YRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 1047
L E A ++ + + + + G A R L ALK
Sbjct: 262 ILLGEFEPAEIVLEELNENAR--SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319
Query: 1048 CNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 1092
R H L++ L + +ILR
Sbjct: 320 LANRTGFISHFVIEGE-AMAQQLRQLIQLNTLPELEQHRAQRILR 363
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.1 bits (111), Expect = 4e-06
Identities = 25/169 (14%), Positives = 47/169 (27%), Gaps = 27/169 (15%)
Query: 889 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT 948
S + L A DK + A+ + + + +
Sbjct: 1 SLVEAISLWNEGVLAADKKDWKGALDAFSAVQDP-----------HSRICFNIGCMYTIL 49
Query: 949 GDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL- 1007
+ +A ++++ +Y + YY+ + +LA+K +K AL L
Sbjct: 50 KNMTEAEKAFTRSINR--------DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR 101
Query: 1008 ------HLTCGPSHPNTAA-TYINVAMMEEGLGNVHVALRYLHKALKCN 1049
+ G A N+A M A L A
Sbjct: 102 GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.7 bits (114), Expect = 4e-06
Identities = 43/286 (15%), Positives = 83/286 (29%), Gaps = 20/286 (6%)
Query: 814 HPLVWRWLELFLMKRYEWDLNGLNFKDVRKFAILRGLCHKVGIELVSRDFDMDSPSPFRK 873
H W++L + + L + + + +
Sbjct: 52 HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEIL- 110
Query: 874 IDVVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRM 933
D + P + + +G + G L + L AV +
Sbjct: 111 RDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSI 170
Query: 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT 993
L V+ +G++++A AL P+ + L +
Sbjct: 171 DPDVQCGLGVLFNLSGEYDKAVDCFTAALS--------VRPNDYLLWNKLGATLANGNQS 222
Query: 994 ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 1053
E A+ +RAL L P + N+ + LG A+ + +AL ++
Sbjct: 223 EEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR 274
Query: 1054 GPDHIQTAAS---YHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 1096
GP A S + + +ALS++ + L L G
Sbjct: 275 GPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFG 320
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.3 bits (100), Expect = 2e-04
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 3/73 (4%)
Query: 904 LDKGKLEDAVTYGTKALA---KLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQK 960
++ G +AV + +AL K G M+ +S L + L G + +
Sbjct: 251 INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 310
Query: 961 ALDINERELGLDH 973
L GL
Sbjct: 311 DLSTLLTMFGLPQ 323
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.5 bits (98), Expect = 3e-04
Identities = 20/174 (11%), Positives = 40/174 (22%), Gaps = 9/174 (5%)
Query: 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDF 951
D Q E L +G L +AV A+ + P H A+ L
Sbjct: 18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ-----DPKH---MEAWQYLGTTQAENEQE 69
Query: 952 NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 1011
A ++ L++ + + + A +
Sbjct: 70 LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEE 129
Query: 1012 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYH 1065
G + + + A++ + + PD
Sbjct: 130 GAGGAGLGPSKRILGSLLSD-SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF 182
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 47.7 bits (113), Expect = 6e-06
Identities = 18/147 (12%), Positives = 39/147 (26%), Gaps = 23/147 (15%)
Query: 901 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQK 960
K AL +G+L+ A+ +A+ P A S +L GDF +A +
Sbjct: 4 KNALSEGQLQQALELLIEAIKA-----SPKD---ASLRSSFIELLCIDGDFERADEQLMQ 55
Query: 961 ALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAA 1020
++ + P+ + L Q + +
Sbjct: 56 SIKLF--------PEYLPGASQLRHLVKAAQARKDFAQG-------AATAKVLGENEELT 100
Query: 1021 TYINVAMMEEGLGNVHVALRYLHKALK 1047
+ + + + +
Sbjct: 101 KSLVSFNLSMVSQDYEQVSELALQIEE 127
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.7 bits (112), Expect = 7e-06
Identities = 20/178 (11%), Positives = 55/178 (30%), Gaps = 8/178 (4%)
Query: 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTE 994
A A + + N A KA D ++ + + +Y + + ++
Sbjct: 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSV 94
Query: 995 LALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054
A+ ++ A + G + ++E L + A+ A + +
Sbjct: 95 NAVDSLENA-IQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD-- 151
Query: 1055 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF 1112
+ + A +L Y + +++++ +G + +L+
Sbjct: 152 QSVALSNKCFIKCADLKALDGQYIEASDIYS---KLIKSSMGNRLSQWSLKDYFLKKG 206
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (102), Expect = 2e-04
Identities = 26/177 (14%), Positives = 47/177 (26%), Gaps = 27/177 (15%)
Query: 906 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 965
LE A + T+ L +L V S L ++ + Q +
Sbjct: 92 SLFLEAASGFYTQLLQELCTVFNVDLPC-RVKSSQLGIISNKQTHTSAIVKPQSSSCSYI 150
Query: 966 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINV 1025
+ L T A Y + A L P+ Y +
Sbjct: 151 CQH----------CLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQL 192
Query: 1026 AMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQ 1082
A++ G+ + Y +++ A+ + ALS V+
Sbjct: 193 AILASSKGDHLTTIFYYCRSIAVK-----FPF---PAASTNLQKALSKALESRDEVK 241
|
| >d1sgoa_ d.82.3.1 (A:) Hypothetical protein c14orf129, hspc210 {Human (Homo sapiens) [TaxId: 9606]} Length = 139 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: N domain of copper amine oxidase-like superfamily: Hypothetical protein c14orf129, hspc210 family: Hypothetical protein c14orf129, hspc210 domain: Hypothetical protein c14orf129, hspc210 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (92), Expect = 8e-04
Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 9/73 (12%)
Query: 211 EEISPDDHLLSLDVKLCNGKMVNVEACRKGFYSVGKQRI---------LCHNIVDLLGQL 261
+ + D + ++V+ +E G VG + LL L
Sbjct: 55 KSLRCADDVAYINVETKERNRYCLELTEAGLKVVGYAFDQVDDHLQTPYHETVYSLLDTL 114
Query: 262 SRAFDNAYNELMN 274
S A+ A+ +
Sbjct: 115 SPAYREAFGNALL 127
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (88), Expect = 0.001
Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 9/101 (8%)
Query: 933 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH 992
+TA L V Y D+ ++ ++AL + D + L+ Y+
Sbjct: 3 LTAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGD 61
Query: 993 TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG 1033
+ AL K+ L L P N+ E +
Sbjct: 62 LDKALLLTKKLLEL--------DPEHQRANGNLKYFEYIMA 94
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1888 | |||
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.65 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.64 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.62 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.61 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.6 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.5 | |
| d1sgoa_ | 139 | Hypothetical protein c14orf129, hspc210 {Human (Ho | 99.5 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.49 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.47 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.46 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.43 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.37 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.23 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.2 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.1 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.09 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.08 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.07 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.03 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.02 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.99 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.97 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.97 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.97 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.94 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.92 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.92 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.91 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.9 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.87 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.86 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.84 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.81 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.8 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.8 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.75 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.72 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.65 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.56 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.51 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.48 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.45 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.45 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.42 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.35 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.3 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.3 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.04 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.04 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.94 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.93 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.92 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.53 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.27 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.09 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.55 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.94 | |
| d1j8ca_ | 103 | Ubiquitin-like N-terminal domain of PLIC-2 {Human | 92.82 | |
| d1yqba1 | 84 | Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | 90.45 | |
| d1bt0a_ | 73 | Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI | 89.92 | |
| d1ttna1 | 80 | Dendritic cell-derived ubiquitin-like protein {Hum | 89.66 | |
| d1z2ma1 | 76 | Interferon-induced 15 kDa protein {Human (Homo sap | 89.06 | |
| d2o02a1 | 230 | zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | 89.02 | |
| d1wx9a1 | 73 | Large proline-rich protein BAT3 {Human (Homo sapie | 88.81 | |
| d1z2ma2 | 76 | Interferon-induced 15 kDa protein {Human (Homo sap | 88.8 | |
| d1wx8a1 | 83 | 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] | 87.45 | |
| d1wh3a_ | 87 | 2'-5'-oligoadenylate synthetase-like protein, OASL | 86.67 | |
| d1wiaa_ | 95 | Ubiquitin-like protein bab25500 (2010008E23Rik) {M | 86.66 | |
| d1uela_ | 95 | Ubiquitin-like domain of Rad23 homolog B (Hhr23B) | 84.77 | |
| d1we6a_ | 111 | Splicing factor 3 subunit 1, C-terminal domain {Th | 84.52 | |
| d2bwfa1 | 73 | DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 84.3 | |
| d1ogwa_ | 76 | Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} | 84.04 | |
| d1wy8a1 | 76 | Ubiquitin-like PHD and RING finger domain-containi | 83.98 | |
| d1o9da_ | 236 | 14-3-3-like protein C {Common tobacco (Nicotiana t | 82.4 | |
| d1m94a_ | 73 | Ubiquitin-like modifier protein hub1 {Baker's yeas | 82.33 | |
| d1oqya4 | 77 | Ubiquitin-like domain of Rad23 homolog A (Hhr23a) | 82.22 | |
| d2o02a1 | 230 | zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | 81.72 | |
| d2faza1 | 76 | Ubiquitin-like PHD and RING finger domain-containi | 81.31 | |
| d2zeqa1 | 78 | Ubiquitin-like domain of parkin {Mouse (Mus muscul | 81.17 | |
| d2o8pa1 | 220 | 14-3-3 domain containing protein cgd7_2470 {Crypto | 80.47 |
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=5.9e-15 Score=169.10 Aligned_cols=246 Identities=13% Similarity=0.060 Sum_probs=178.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000191 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 975 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ 975 (1888)
.++.|..++..|++++|+.+|++++.. +|..+.+|..||.+|..+|++++|+.++.+|+.+ +|.
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~ 85 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHMEAWQYLGTTQAENEQELLAISALRRCLEL--------KPD 85 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc--------ccc
Confidence 367899999999999999999999975 5667789999999999999999999999999987 456
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-CChhHHH------HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000191 976 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP-SHPNTAA------TYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~-dhP~~a~------a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
....+.++|.+|..+|++++|+.++++++.+....... ....... ....+...+...+.+.+|+..|++++++
T Consensus 86 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~ 165 (323)
T d1fcha_ 86 NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 165 (323)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999998753211000 0000001 1111222344556788999999999876
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000191 1049 NQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTR 1128 (1888)
Q Consensus 1049 ~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~ 1128 (1888)
. ++. ..+.++..+|.++..+|++++|+.++++++.+ .+++......+.. .+...+..+.+........
T Consensus 166 ~-----p~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~-~~~~~g~~~~A~~~~~~al 233 (323)
T d1fcha_ 166 D-----PTS-IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-----RPNDYLLWNKLGA-TLANGNQSEEAVAAYRRAL 233 (323)
T ss_dssp S-----TTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred h-----hcc-cccccchhhHHHHHHHHHHhhhhccccccccc-----ccccccchhhhhh-cccccccchhHHHHHHHHH
Confidence 3 222 23467788999999999999999999999864 4566554333332 2344444544443332211
Q ss_pred CCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1129 KPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1129 ~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
.. .+....++..+|.+|..+|++++|+.+|++|+++.....
T Consensus 234 ~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 274 (323)
T d1fcha_ 234 EL--------QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR 274 (323)
T ss_dssp HH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred HH--------hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCh
Confidence 00 123356789999999999999999999999999987654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=2.1e-14 Score=162.03 Aligned_cols=194 Identities=11% Similarity=0.017 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+....-.|.+++.+|++++|+.+|++++..... ......+.++..+|.+|+.+|++++|+.+|++++.+..+ ..+
T Consensus 12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~---~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~--~~~ 86 (366)
T d1hz4a_ 12 AEFNALRAQVAINDGNPDEAERLAKLALEELPP---GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ--HDV 86 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--TTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC---CCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh--hcc
Confidence 444555689999999999999999999986321 223345678999999999999999999999999999876 345
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
.+....++.+++.++...|++..|+.++.+++.+.....+..++..+.++..+|.++...|+++.|..++++++......
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~ 166 (366)
T d1hz4a_ 87 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 166 (366)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhh
Confidence 67778899999999999999999999999999999888777788888899999999999999999999999999886543
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 1094 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~ 1094 (1888)
.......++..++..+...+++..|..++.++..++...
T Consensus 167 ---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~ 205 (366)
T d1hz4a_ 167 ---QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG 205 (366)
T ss_dssp ---CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred ---hhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 233456778889999999999999999999999887653
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=2e-14 Score=164.67 Aligned_cols=249 Identities=16% Similarity=0.157 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh----
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE---- 968 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~---- 968 (1888)
...++.+|.+++..|++++|+.+|++++.+ +|..+.++..||.+|..+|++++|+.++.+++......
T Consensus 33 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 104 (388)
T d1w3ba_ 33 TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGY 104 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHhhhhcccccccccccccccccccccccc
Confidence 345777899999999999999999999887 45667789999999999999999998887776531100
Q ss_pred --------------------------------------------------------cCCCChhhHHHHHHHHHHHHHcCC
Q 000191 969 --------------------------------------------------------LGLDHPDTMKSYGDLAVFYYRLQH 992 (1888)
Q Consensus 969 --------------------------------------------------------lG~Dhp~ta~ay~nLA~ly~~lGd 992 (1888)
.-...+....++.++|.++...|+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (388)
T d1w3ba_ 105 INLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 184 (388)
T ss_dssp HHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCc
Confidence 000123335567777888888888
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 000191 993 TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALS 1072 (1888)
Q Consensus 993 yeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~ 1072 (1888)
+++|..++.+++.+ +|....++.++|.+|...|++++|+..|++++.+. +.....+..+|.+|.
T Consensus 185 ~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~ 248 (388)
T d1w3ba_ 185 IWLAIHHFEKAVTL--------DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS--------PNHAVVHGNLACVYY 248 (388)
T ss_dssp HHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--------CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh--------hhHHHHHHHHHHHHH
Confidence 88888888887764 23334445555555555555555555555544431 112233444455555
Q ss_pred HcCChHHHHHHHHHHHHHHH-----------------------------HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 000191 1073 LMEAYPLSVQHEQTTLQILR-----------------------------AKLGPDDLRTQDAAAWLEYFESKAFEQQEAA 1123 (1888)
Q Consensus 1073 ~lGdydeAle~lqkALeI~k-----------------------------k~LG~dh~~tl~a~~~La~L~qka~e~AeAl 1123 (1888)
..|++++|+.+|++++++.. ....+.+.........+ +...+.++.+...
T Consensus 249 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~ 327 (388)
T d1w3ba_ 249 EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI-KREQGNIEEAVRL 327 (388)
T ss_dssp HTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHTTTCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHH-HHHCCCHHHHHHH
Confidence 55555555555555443200 00122222222211111 1222233333332
Q ss_pred HhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000191 1124 RNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1124 ~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
..... ...+....++..+|.+|..+|++++|+.+|++++++..
T Consensus 328 ~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P 370 (388)
T d1w3ba_ 328 YRKAL--------EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HHHHT--------TSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHHHH--------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 22211 11223456788899999999999999999999988654
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=1e-14 Score=167.18 Aligned_cols=171 Identities=16% Similarity=0.236 Sum_probs=142.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000191 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 975 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ 975 (1888)
|+++|..++..|+|++|+.+|++++.. +|....++..+|.+|..+|++++|+.++++++.+ +|.
T Consensus 2 ll~la~~~~~~G~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~ 65 (388)
T d1w3ba_ 2 PMELAHREYQAGDFEAAERHCMQLWRQ--------EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--------NPL 65 (388)
T ss_dssp CCTHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC
Confidence 456789999999999999999999876 4555678999999999999999999999999986 466
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------------h-------------------------------
Q 000191 976 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL--------------T------------------------------- 1010 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~k--------------i------------------------------- 1010 (1888)
...++.+||.+|..+|++++|+.++.+++..... .
T Consensus 66 ~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (388)
T d1w3ba_ 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLL 145 (388)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7789999999999999999999999887764110 0
Q ss_pred ---------------cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcC
Q 000191 1011 ---------------CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLME 1075 (1888)
Q Consensus 1011 ---------------~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lG 1075 (1888)
....+|....++.++|.++...|++++|+.++++++++. +....++..+|.+|...|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~ 217 (388)
T d1w3ba_ 146 KALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--------PNFLDAYINLGNVLKEAR 217 (388)
T ss_dssp HTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTT
T ss_pred cccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC--------cccHHHHHHHhhhhhccc
Confidence 000123335678889999999999999999999999863 334567889999999999
Q ss_pred ChHHHHHHHHHHHHH
Q 000191 1076 AYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1076 dydeAle~lqkALeI 1090 (1888)
++++|+..++++..+
T Consensus 218 ~~~~A~~~~~~~~~~ 232 (388)
T d1w3ba_ 218 IFDRAVAAYLRALSL 232 (388)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhHHH
Confidence 999999999988754
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=4.2e-14 Score=159.46 Aligned_cols=274 Identities=10% Similarity=-0.055 Sum_probs=213.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+..+..+|.+++..|++++|+.+|++++.+.... .+.+..+.++..++.+|...|++..|...+.+++.+.....+.
T Consensus 50 ~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~ 127 (366)
T d1hz4a_ 50 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE 127 (366)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccc
Confidence 35667888999999999999999999999987664 4566778899999999999999999999999999999888777
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
........+..+|.++...|+++.|+.++.+++...... .......++..++.++...+++.++..++.++..+...
T Consensus 128 ~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~ 204 (366)
T d1hz4a_ 128 QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY---QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN 204 (366)
T ss_dssp TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS---CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhh---hhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 777788899999999999999999999999999875432 23445677888999999999999999999999998765
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCC
Q 000191 1052 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE--YFESKAFEQQEAARNGTRK 1129 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La--~L~qka~e~AeAl~~~~~~ 1129 (1888)
. +........++..++.++...|++++|..++++++.+. ..++.........++ ++..+.++.+........
T Consensus 205 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al- 278 (366)
T d1hz4a_ 205 G-KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE----FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN- 278 (366)
T ss_dssp S-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC----CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred h-cccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc----cccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-
Confidence 4 34455667788889999999999999999998877542 122222222333333 333344444433322111
Q ss_pred CchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1130 PDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1130 ~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
.........+....++..+|.+|..+|++++|+.+|++|+++....+
T Consensus 279 -~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~ 325 (366)
T d1hz4a_ 279 -ENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG 325 (366)
T ss_dssp -HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC
T ss_pred -HHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcC
Confidence 11111233445677899999999999999999999999999987765
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=3.1e-13 Score=149.61 Aligned_cols=226 Identities=15% Similarity=0.043 Sum_probs=153.2
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 000191 908 KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFY 987 (1888)
Q Consensus 908 d~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly 987 (1888)
+.+.|+..+.+++... ....+..+.+++.+|.+|..+|++++|+.+|++|+.+ +|+...+|++||.+|
T Consensus 14 ~~e~al~~~~e~l~~~----~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l--------~p~~~~a~~~lg~~~ 81 (259)
T d1xnfa_ 14 QQEVILARMEQILASR----ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYL 81 (259)
T ss_dssp HHHHHHHHHHHHHTSS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh----hcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc--------CCCCHHHHhhhchHH
Confidence 3455666666655421 1234567889999999999999999999999999997 466778899999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 000191 988 YRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAI 1067 (1888)
Q Consensus 988 ~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nL 1067 (1888)
..+|++++|+.+|++++.+ +|....++.++|.+|..+|++++|+.+|++++++. +.. ......+
T Consensus 82 ~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~---~~~~~~~ 145 (259)
T d1xnfa_ 82 TQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-----PND---PFRSLWL 145 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHH
T ss_pred HHHHHHHHhhhhhhHHHHH--------HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-----ccc---HHHHHHH
Confidence 9999999999999999986 34455688999999999999999999999999873 222 2234445
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHH
Q 000191 1068 AIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF-ESKAFEQQEAARNGTRKPDASIASKGHLSVSDLL 1146 (1888)
Q Consensus 1068 A~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L-~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL 1146 (1888)
+.++...+..+.+...... .................+... .......+... .. .... . .+...+++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~-~---~~~~~~~~ 212 (259)
T d1xnfa_ 146 YLAEQKLDEKQAKEVLKQH-----FEKSDKEQWGWNIVEFYLGNISEQTLMERLKAD--AT--DNTS-L---AEHLSETN 212 (259)
T ss_dssp HHHHHHHCHHHHHHHHHHH-----HHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHH--CC--SHHH-H---HHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHH-----hhccchhhhhhhHHHHHHHHHHHHHHHHHHHHH--HH--Hhhh-c---CcccHHHH
Confidence 6666666654444333222 122333333222111111111 11112211111 11 1111 1 12456688
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000191 1147 DYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1147 ~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
.+||.+|..+|++++|+.+|++++....
T Consensus 213 ~~lg~~~~~~g~~~~A~~~~~~al~~~p 240 (259)
T d1xnfa_ 213 FYLGKYYLSLGDLDSATALFKLAVANNV 240 (259)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999997654
|
| >d1sgoa_ d.82.3.1 (A:) Hypothetical protein c14orf129, hspc210 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: N domain of copper amine oxidase-like superfamily: Hypothetical protein c14orf129, hspc210 family: Hypothetical protein c14orf129, hspc210 domain: Hypothetical protein c14orf129, hspc210 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=7.5e-15 Score=149.66 Aligned_cols=77 Identities=19% Similarity=0.170 Sum_probs=63.7
Q ss_pred ccccccccccCCCChhhhhcccccccccCCCCCceEEEEEEEeCCceEEEEEeccceeecCC---------CccccchHH
Q 000191 185 SFYEFFSLSHLTPPLQFIRKAPKRRVEEISPDDHLLSLDVKLCNGKMVNVEACRKGFYSVGK---------QRILCHNIV 255 (1888)
Q Consensus 185 ~~~k~~s~S~wnPPp~~~r~~~~~~~~~~~~~Gdl~YL~v~t~Eg~~~~ITa~~~GFyvn~~---------~~~~~HsLv 255 (1888)
..++.|..|.|-|+ .+||+||+|+|+||++||||+|++|||||+. ....+|||+
T Consensus 46 f~V~~i~vS~~Lp~-----------------t~dl~YLnv~TlEg~~~cIt~t~~GF~Vn~s~~d~fdp~~~~~~~etl~ 108 (139)
T d1sgoa_ 46 FAVNNMFVSKSLRC-----------------ADDVAYINVETKERNRYCLELTEAGLKVVGYAFDQVDDHLQTPYHETVY 108 (139)
T ss_dssp GGSSEEEECCSSCE-----------------ETTEEEEEEECTTCCEEEEEEETTEEEEEESSTTCCCTTCCCCEESSSH
T ss_pred HHHhheeccccCCC-----------------CCcEEEEEEEEecCCeEEEEEecCeEEEecccccccCCCccccccccHH
Confidence 44555666666554 2799999999999999999999999999843 234689999
Q ss_pred HHHhhhcHHHHHHHHHHHHHhhc
Q 000191 256 DLLGQLSRAFDNAYNELMNAFSE 278 (1888)
Q Consensus 256 ~LL~~iSp~F~~~f~~l~k~~~~ 278 (1888)
+||++|||+|+++|...++++.+
T Consensus 109 ~LL~~iSP~f~~~F~~~L~~kLe 131 (139)
T d1sgoa_ 109 SLLDTLSPAYREAFGNALLQRLE 131 (139)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHHHH
Confidence 99999999999999987776643
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.49 E-value=4.3e-13 Score=153.70 Aligned_cols=228 Identities=11% Similarity=0.016 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 1013 (1888)
Q Consensus 934 ~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~ 1013 (1888)
.+.+|...|.+|..+|+|++|+.+|.+|+.+..+. .+++..+.+|.++|.+|..+|++++|+.+|++++.++... .
T Consensus 36 Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~--~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~--~ 111 (290)
T d1qqea_ 36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--G 111 (290)
T ss_dssp HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc--c
Confidence 35677788999999999999999999999998873 4567788999999999999999999999999999998774 3
Q ss_pred CChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 000191 1014 SHPNTAATYINVAMMEEG-LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 1092 (1888)
Q Consensus 1014 dhP~~a~a~~NLA~iy~~-lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~k 1092 (1888)
+......++.++|.+|.. .|++++|+.+|++|+++.... ......+.++.++|.+|..+|+|++|+.+|++++.+..
T Consensus 112 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~--~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~ 189 (290)
T d1qqea_ 112 QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM 189 (290)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred cchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc--CchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCc
Confidence 445667889999999865 699999999999999998765 34556778899999999999999999999999987653
Q ss_pred HhcCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHH--cCChHHHHHHHHH
Q 000191 1093 AKLGPDDLRTQD--AAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDT--KGRNVSTLKRKTY 1168 (1888)
Q Consensus 1093 k~LG~dh~~tl~--a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~--qGdyeEAleyyeK 1168 (1888)
.... .+..... ....+.++..+....+............... +. ....++..+...+.. .+++.+|+..|.+
T Consensus 190 ~~~~-~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~--~s-re~~~l~~l~~a~~~~d~e~~~eai~~y~~ 265 (290)
T d1qqea_ 190 GNRL-SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA--DS-RESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (290)
T ss_dssp SCTT-TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred cchh-hhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcc--ch-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3211 1111111 2223334444555555444443332221111 11 123345555555544 4568888888854
Q ss_pred HHH
Q 000191 1169 VAK 1171 (1888)
Q Consensus 1169 ALe 1171 (1888)
+.+
T Consensus 266 ~~~ 268 (290)
T d1qqea_ 266 FMR 268 (290)
T ss_dssp SSC
T ss_pred Hhh
Confidence 443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.47 E-value=1e-12 Score=150.46 Aligned_cols=193 Identities=11% Similarity=-0.062 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..+...|..|..+|+|++|+.+|.+|+.++... .+++..+.+|.++|.+|..+|++++|+.+|++++.++... .+
T Consensus 37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~--~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~--~~ 112 (290)
T d1qqea_ 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQ 112 (290)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TC
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc--cc
Confidence 5667788899999999999999999999998775 4567788999999999999999999999999999998874 34
Q ss_pred ChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 973 HPDTMKSYGDLAVFYYR-LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~-lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
......++.++|.+|.. .|++++|+.+|++|+.+.... .+.+....++.++|.+|..+|+|++|+.+|++++.+...
T Consensus 113 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~--~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~ 190 (290)
T d1qqea_ 113 FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG 190 (290)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred chhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc--CchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCcc
Confidence 45567889999998866 699999999999999988763 334567888999999999999999999999999887643
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 000191 1052 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 1092 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~k 1092 (1888)
. +.........+.+++.++...|++..|...++++.++..
T Consensus 191 ~-~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~ 230 (290)
T d1qqea_ 191 N-RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (290)
T ss_dssp C-TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred c-hhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 3 222344556778889999999999999999998876643
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=6e-13 Score=155.05 Aligned_cols=245 Identities=10% Similarity=0.083 Sum_probs=183.9
Q ss_pred cccHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Q 000191 887 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG-DFNQATIYQQKALDIN 965 (1888)
Q Consensus 887 ~~~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lG-dyeeAl~~~eKAL~I~ 965 (1888)
......+..+..+|.++..++.+++|+.++++|+.+ .|....+|+++|.++..+| ++++|+.++++++.+
T Consensus 37 ~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--------nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~- 107 (315)
T d2h6fa1 37 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE- 107 (315)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-
T ss_pred ccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH--------CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-
Confidence 344555677777899999999999999999999998 6777889999999999987 599999999999997
Q ss_pred HHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 000191 966 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKA 1045 (1888)
Q Consensus 966 Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekA 1045 (1888)
+|....+|.++|.++..+|++++|+.++.+++.+ +|....++.++|.++..+|++++|+.+|+++
T Consensus 108 -------~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~--------dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~a 172 (315)
T d2h6fa1 108 -------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQL 172 (315)
T ss_dssp -------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred -------HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhh--------hhcchHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 6778999999999999999999999999999986 4666789999999999999999999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHcCC------hHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH-HH
Q 000191 1046 LKCNQRLLGPDHIQTAASYHAIAIALSLMEA------YPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKA-FE 1118 (1888)
Q Consensus 1046 Lei~ek~~G~d~~~tA~al~nLA~ay~~lGd------ydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka-~e 1118 (1888)
+++. +....+++++|.++...+. +++|+.++.+++.+ .+++......+.++ .... ..
T Consensus 173 l~~~--------p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~-----~P~~~~~~~~l~~l---l~~~~~~ 236 (315)
T d2h6fa1 173 LKED--------VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL-----VPHNESAWNYLKGI---LQDRGLS 236 (315)
T ss_dssp HHHC--------TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH-----STTCHHHHHHHHHH---HTTTCGG
T ss_pred HHHC--------CccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHh-----CCCchHHHHHHHHH---HHhcChH
Confidence 9873 4455688999999988877 46788888888754 56666544333332 2110 11
Q ss_pred HHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHhcccc
Q 000191 1119 QQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDT--KGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1119 ~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~--qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
.+........ . ....+ ....++..++.+|.. .++.+.+...+.+++++...+.
T Consensus 237 ~~~~~~~~~~----~-l~~~~-~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l~~~l~ 291 (315)
T d2h6fa1 237 KYPNLLNQLL----D-LQPSH-SSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILA 291 (315)
T ss_dssp GCHHHHHHHH----H-HTTTC-CCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----H-hCCCc-CCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 1111100000 0 00111 112345666666643 4677778889999988877654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=2.6e-12 Score=146.75 Aligned_cols=175 Identities=15% Similarity=0.043 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-----
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER----- 967 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er----- 967 (1888)
+..++.+|.++...|++++|+.+|.+++.+ +|....++..+|.+|..+|++++|+..+++++.+...
T Consensus 53 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 124 (323)
T d1fcha_ 53 MEAWQYLGTTQAENEQELLAISALRRCLEL--------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLV 124 (323)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGC
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhhcc--------ccccccccccccccccccccccccccchhhHHHhccchHHHH
Confidence 566888899999999999999999999987 4556678999999999999999999999888754211
Q ss_pred -------------------------------------hc--CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000191 968 -------------------------------------EL--GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH 1008 (1888)
Q Consensus 968 -------------------------------------~l--G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ 1008 (1888)
.+ .++ .....++.++|.++..+|++++|+.+|++++.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-- 201 (323)
T d1fcha_ 125 TPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPT-SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-- 201 (323)
T ss_dssp C---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhc-ccccccchhhHHHHHHHHHHhhhhccccccccc--
Confidence 00 001 112345667777888888888888888877764
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000191 1009 LTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 1088 (1888)
Q Consensus 1009 ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkAL 1088 (1888)
+|....++.++|.+|..+|++++|+.+|++++++. +..+.++++||.+|..+|++++|+.+|++|+
T Consensus 202 ------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 267 (323)
T d1fcha_ 202 ------RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ--------PGYIRSRYNLGISCINLGAHREAVEHFLEAL 267 (323)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ------ccccccchhhhhhcccccccchhHHHHHHHHHHHh--------hccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 24445667778888888888888888888777652 2234567777888888888888888888877
Q ss_pred HHHH
Q 000191 1089 QILR 1092 (1888)
Q Consensus 1089 eI~k 1092 (1888)
++..
T Consensus 268 ~l~p 271 (323)
T d1fcha_ 268 NMQR 271 (323)
T ss_dssp HHHH
T ss_pred HhCC
Confidence 7643
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=9.2e-12 Score=137.51 Aligned_cols=176 Identities=13% Similarity=0.037 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000191 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 969 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~l 969 (1888)
...+..++.+|.+|...|++++|+..|++|+.+ +|..+.+|++||.+|..+|++++|+.+|++|+.+
T Consensus 34 ~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~----- 100 (259)
T d1xnfa_ 34 DERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL----- 100 (259)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc--------CCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH-----
Confidence 345788999999999999999999999999987 5666789999999999999999999999999997
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Q 000191 970 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC- 1048 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei- 1048 (1888)
+|....++.++|.+|..+|++++|+.+|++++.+. +.+ ......++.++...+..+.+..+.......
T Consensus 101 ---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (259)
T d1xnfa_ 101 ---DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-----PND---PFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD 169 (259)
T ss_dssp ---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC
T ss_pred ---HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-----ccc---HHHHHHHHHHHHHhhhHHHHHHHHHHhhccc
Confidence 45567789999999999999999999999998752 222 223334444444444433332222211110
Q ss_pred --------HHHhcC---------------C----CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000191 1049 --------NQRLLG---------------P----DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1049 --------~ek~~G---------------~----d~~~tA~al~nLA~ay~~lGdydeAle~lqkALe 1089 (1888)
.....+ . ..+....++++||.+|..+|++++|+.+|++|+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 237 (259)
T d1xnfa_ 170 KEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 237 (259)
T ss_dssp CCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 000000 0 1234556788999999999999999999999984
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=4.2e-11 Score=129.74 Aligned_cols=140 Identities=16% Similarity=0.123 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
..+..++..|..++.+|+|++|+..|.++ .+. .+.++++||.+|+.+|++++|+.+|++|+.+
T Consensus 3 ~~~~~l~~~g~~~~~~~d~~~Al~~~~~i--------~~~---~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l------ 65 (192)
T d1hh8a_ 3 VEAISLWNEGVLAADKKDWKGALDAFSAV--------QDP---HSRICFNIGCMYTILKNMTEAEKAFTRSINR------ 65 (192)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTS--------SSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHhc--------CCC---CHHHHHHHHHHHHHcCCchhHHHHHHHHHHH------
Confidence 45678899999999999999999988653 122 2467899999999999999999999999987
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-------cCCC-ChhHHHHHHHHHHHHHHCCCHHHHHHHH
Q 000191 971 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT-------CGPS-HPNTAATYINVAMMEEGLGNVHVALRYL 1042 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki-------~G~d-hP~~a~a~~NLA~iy~~lG~yeeAle~L 1042 (1888)
+|....+|+++|.+|..+|++++|+.+|++|+...... .|.. ......+++++|.+|..+|++++|++.|
T Consensus 66 --dp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l 143 (192)
T d1hh8a_ 66 --DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQL 143 (192)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --hhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 57778999999999999999999999999999753210 1111 2234678999999999999999999999
Q ss_pred HHHHHHH
Q 000191 1043 HKALKCN 1049 (1888)
Q Consensus 1043 ekALei~ 1049 (1888)
++|+.+.
T Consensus 144 ~~A~~~~ 150 (192)
T d1hh8a_ 144 ALATSMK 150 (192)
T ss_dssp HHHHTTC
T ss_pred HHHHhcC
Confidence 9988763
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=2.1e-11 Score=141.79 Aligned_cols=204 Identities=10% Similarity=0.085 Sum_probs=157.3
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Q 000191 931 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH-TELALKYVKRALYLLHL 1009 (1888)
Q Consensus 931 hpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGd-yeeALey~~kALeL~~k 1009 (1888)
.|..+.++.++|.++...+.+++|+..+++||.+ .|....+|+++|.++..+|+ +++|+.++.+++.+
T Consensus 39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--------nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--- 107 (315)
T d2h6fa1 39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--- 107 (315)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH--------CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---
Confidence 5778899999999999999999999999999998 57888999999999999875 99999999999986
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000191 1010 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1010 i~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALe 1089 (1888)
+|....+++++|.++..+|++++|+.+|++++++. +....++.++|.++..+|++++|+.+++++++
T Consensus 108 -----~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d--------p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~ 174 (315)
T d2h6fa1 108 -----QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD--------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK 174 (315)
T ss_dssp -----CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred -----HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh--------hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 57778899999999999999999999999999873 34567899999999999999999999999996
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHH--------HHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHH
Q 000191 1090 ILRAKLGPDDLRTQDAAAWLEYFES--------KAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVS 1161 (1888)
Q Consensus 1090 I~kk~LG~dh~~tl~a~~~La~L~q--------ka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeE 1161 (1888)
+ .+.+..... +++.+.. +..+.+....... ....+....++.+++.++... ...+
T Consensus 175 ~-----~p~n~~a~~---~r~~~l~~~~~~~~~~~~~~ai~~~~~a--------l~~~P~~~~~~~~l~~ll~~~-~~~~ 237 (315)
T d2h6fa1 175 E-----DVRNNSVWN---QRYFVISNTTGYNDRAVLEREVQYTLEM--------IKLVPHNESAWNYLKGILQDR-GLSK 237 (315)
T ss_dssp H-----CTTCHHHHH---HHHHHHHHTTCSCSHHHHHHHHHHHHHH--------HHHSTTCHHHHHHHHHHHTTT-CGGG
T ss_pred H-----CCccHHHHH---HHHHHHHHccccchhhhhHHhHHHHHHH--------HHhCCCchHHHHHHHHHHHhc-ChHH
Confidence 5 566654332 3322211 1112221111110 001112345678888887654 4678
Q ss_pred HHHHHHHHHHHhcc
Q 000191 1162 TLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1162 AleyyeKALeL~dS 1175 (1888)
|...+++++++...
T Consensus 238 ~~~~~~~~~~l~~~ 251 (315)
T d2h6fa1 238 YPNLLNQLLDLQPS 251 (315)
T ss_dssp CHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCC
Confidence 88999888887554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=3.1e-10 Score=122.83 Aligned_cols=135 Identities=15% Similarity=0.080 Sum_probs=110.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000191 937 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP 1016 (1888)
Q Consensus 937 ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP 1016 (1888)
.+.+.|..+...|+|++|+..|.++ ... ...+++|||.+|..+|++++|+.+|++|+++ .|
T Consensus 7 ~l~~~g~~~~~~~d~~~Al~~~~~i--------~~~---~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--------dp 67 (192)
T d1hh8a_ 7 SLWNEGVLAADKKDWKGALDAFSAV--------QDP---HSRICFNIGCMYTILKNMTEAEKAFTRSINR--------DK 67 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS--------SSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhc--------CCC---CHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--------hh
Confidence 3446799999999999999888652 122 2467899999999999999999999999986 35
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh-------cCC-CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000191 1017 NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL-------LGP-DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 1088 (1888)
Q Consensus 1017 ~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~-------~G~-d~~~tA~al~nLA~ay~~lGdydeAle~lqkAL 1088 (1888)
..+.+++++|.+|..+|++++|+..|++|+...... .|. .......+++++|.+|..+|++++|++.+++|+
T Consensus 68 ~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~ 147 (192)
T d1hh8a_ 68 HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 147 (192)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 667899999999999999999999999999864321 111 122346788999999999999999999999888
Q ss_pred HH
Q 000191 1089 QI 1090 (1888)
Q Consensus 1089 eI 1090 (1888)
.+
T Consensus 148 ~~ 149 (192)
T d1hh8a_ 148 SM 149 (192)
T ss_dssp TT
T ss_pred hc
Confidence 55
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.09 E-value=7.4e-10 Score=127.98 Aligned_cols=234 Identities=13% Similarity=0.072 Sum_probs=157.7
Q ss_pred HHcCC-hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 904 LDKGK-LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH----------TGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 904 l~qGd-~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~----------lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...|. .++|+.+++++|.+ +|+...+|...+.++.. .|++++|+.++++++..
T Consensus 39 ~~~~~~~~~al~~~~~~l~~--------~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~-------- 102 (334)
T d1dcea1 39 RQAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-------- 102 (334)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HhcccccHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh--------
Confidence 34454 48999999999986 45555566555555443 34467777777777764
Q ss_pred ChhhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000191 973 HPDTMKSYGDLAVFYYRLQH--TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGd--yeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
+|....++.++|.++...++ +++|+.++.+++.+. .......+..+|.++...+++++|+.++++++.+
T Consensus 103 ~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-------~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~-- 173 (334)
T d1dcea1 103 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-- 173 (334)
T ss_dssp CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--
T ss_pred CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-------chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc--
Confidence 57778888999988888765 899999999999862 2223334567889999999999999999998876
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh---------cCCCCHHHHHHHHHH------------
Q 000191 1051 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK---------LGPDDLRTQDAAAWL------------ 1109 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~---------LG~dh~~tl~a~~~L------------ 1109 (1888)
++....+++++|.+|..+|++++|+..+++++.+.... ++..+.........+
T Consensus 174 ------~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~ 247 (334)
T d1dcea1 174 ------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCEL 247 (334)
T ss_dssp ------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCC
T ss_pred ------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHH
Confidence 34456788999999999999998877776666554432 222222111111111
Q ss_pred -HHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000191 1110 -EYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1110 -a~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
+..........+++.. ........+....++..+|.+|..+|++++|+.+|++++++..
T Consensus 248 l~~~~~~~~~~~~a~~~------~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP 307 (334)
T d1dcea1 248 SVEKSTVLQSELESCKE------LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 307 (334)
T ss_dssp CHHHHHHHHHHHHHHHH------HHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHhhHHHHHHH------HHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 0111111111111111 0112233445678899999999999999999999999999865
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.08 E-value=9.6e-10 Score=114.51 Aligned_cols=142 Identities=16% Similarity=0.111 Sum_probs=110.6
Q ss_pred hHHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC----ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 933 MTAGAYSLL--AVVLYHTGDFNQATIYQQKALDINERELGLD----HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 933 e~A~ay~~L--A~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D----hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
+++.++..+ |..++..|+|++|+..|++|+.+........ .+..+.+|.++|.+|..+|+|++|+.++.+++.+
T Consensus 5 ~~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~ 84 (156)
T d2hr2a1 5 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY 84 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhc
Confidence 355667666 7788899999999999999999987642211 2234678999999999999999999999999999
Q ss_pred HHHhcCC---CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcC
Q 000191 1007 LHLTCGP---SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLME 1075 (1888)
Q Consensus 1007 ~~ki~G~---dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lG 1075 (1888)
....... .++....+++++|.+|..+|++++|+.+|++|+++..+..+. .......+..++..+..+|
T Consensus 85 ~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~-~~~~~~~~~~~~~~l~~lg 155 (156)
T d2hr2a1 85 FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE-TPGKERMMEVAIDRIAQLG 155 (156)
T ss_dssp HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC-CTTHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhch-HHHHHHHHHHHHHHHHHcC
Confidence 8775332 245567789999999999999999999999999999877543 3344455555555555443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=1.2e-09 Score=113.80 Aligned_cols=131 Identities=13% Similarity=0.111 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
..|..|...|..++..|+|++|+.+|++++.+ +|..+.+|.++|.+|..+|++++|+..|++|+.+
T Consensus 8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~------ 73 (159)
T d1a17a_ 8 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------ 73 (159)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHhhhcccc--------chhhhhhhhhhHHHHHhccccchHHHHHHHHHHH------
Confidence 45788999999999999999999999999987 5677889999999999999999999999999998
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH--HHCCCHHHHHHHHHHH
Q 000191 971 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMME--EGLGNVHVALRYLHKA 1045 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy--~~lG~yeeAle~LekA 1045 (1888)
.|....+|.++|.+|..+|++++|+.+|++++.+ .++++. ++..++.+. ...+.+++|+...+..
T Consensus 74 --~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~-----~p~~~~---~~~~l~~~~~~~~~~~~~~a~~~~~~~ 140 (159)
T d1a17a_ 74 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHDKD---AKMKYQECNKIVKQKAFERAIAGDEHK 140 (159)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHH---HHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 4777889999999999999999999999999986 344443 333344432 3334455555443333
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.03 E-value=2.5e-09 Score=111.31 Aligned_cols=140 Identities=16% Similarity=0.051 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC----ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPY----HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 966 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~d----hpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~E 966 (1888)
..+..++..|..++..|+|++|+..|++|+++........ .+..+.+|.++|.+|..+|++++|+..+++++.+..
T Consensus 7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~ 86 (156)
T d2hr2a1 7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 86 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence 3466677779999999999999999999999977652211 234578999999999999999999999999999988
Q ss_pred HhcCCC---ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 000191 967 RELGLD---HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 1031 (1888)
Q Consensus 967 r~lG~D---hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~ 1031 (1888)
+..... ++....+|+++|.+|..+|++++|+.+|++|+++.....+. .+.....+..++..+..
T Consensus 87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~-~~~~~~~~~~~~~~l~~ 153 (156)
T d2hr2a1 87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE-TPGKERMMEVAIDRIAQ 153 (156)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC-CTTHHHHHHHHHHHHHH
T ss_pred ccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhch-HHHHHHHHHHHHHHHHH
Confidence 764322 33456789999999999999999999999999998876543 34444445555544443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=1.5e-09 Score=108.01 Aligned_cols=112 Identities=23% Similarity=0.235 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..|.+.|..++..|+|++|+.+|.+++.+ .|..+.+|.++|.+|..+|++++|+.++.+++.+
T Consensus 3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------- 66 (117)
T d1elwa_ 3 VNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-------- 66 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcchhhhhcccccccccccccccchhhhhHHHh--------
Confidence 567888999999999999999999999987 5677789999999999999999999999999987
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMM 1028 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~i 1028 (1888)
.|....+|.++|.+|..+|++++|+.+|++++.+ .++++. ++.+++.+
T Consensus 67 ~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~---~~~~l~~l 114 (117)
T d1elwa_ 67 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH-----EANNPQ---LKEGLQNM 114 (117)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CTTCHH---HHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHH
Confidence 4667789999999999999999999999999974 344544 44444444
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=5.4e-09 Score=108.69 Aligned_cols=99 Identities=23% Similarity=0.336 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 1014 (1888)
Q Consensus 935 A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~d 1014 (1888)
+..+...|..|+..|+|++|+.+|++|+.+ +|....+|.++|.+|..+|++++|+.+|++|+++
T Consensus 10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~-------- 73 (159)
T d1a17a_ 10 AEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-------- 73 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHhhhcccc--------chhhhhhhhhhHHHHHhccccchHHHHHHHHHHH--------
Confidence 456778899999999999999999999997 5778899999999999999999999999999987
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 1015 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1015 hP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
.|....++.++|.+|..+|++++|+.+|++++.+.
T Consensus 74 ~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 74 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK 108 (159)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 35566789999999999999999999999999873
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.97 E-value=1.1e-09 Score=116.17 Aligned_cols=101 Identities=18% Similarity=0.168 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..|.+.|..++..|+|++|+.+|++|+.+ .|..+.+|.++|.+|..+|++++|+.+|++|+.+
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--------~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l-------- 67 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-------- 67 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--------
Confidence 667889999999999999999999999998 5667889999999999999999999999999876
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 1009 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~k 1009 (1888)
.|....+|.+||.+|..+|++++|+.+|++|+.+...
T Consensus 68 ~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~ 104 (201)
T d2c2la1 68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104 (201)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 5777889999999999999999999999999998644
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=8.3e-09 Score=104.02 Aligned_cols=105 Identities=17% Similarity=0.152 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 1014 (1888)
Q Consensus 935 A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~d 1014 (1888)
|..+..+|..|+..|+|++|+.+|.+|+.+ +|....++.++|.+|..+|+|++|+.+|.+|+.+.... ...
T Consensus 4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~-~~~ 74 (128)
T d1elra_ 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-RED 74 (128)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-TTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCccc-HHH
Confidence 567789999999999999999999999997 45667899999999999999999999999999987663 344
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000191 1015 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 1015 hP~~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
+...+.+|.++|.++..++++++|+.+|++++..
T Consensus 75 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 6777899999999999999999999999999875
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=7.1e-09 Score=104.56 Aligned_cols=106 Identities=18% Similarity=0.247 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.|..+.++|..++..|+|++|+.+|++++.+ +|....++.++|.+|..+|+|++|+..+++|+.+..+. ..
T Consensus 3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~-~~ 73 (128)
T d1elra_ 3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-RE 73 (128)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCccc-HH
Confidence 3667788999999999999999999999987 45667899999999999999999999999999997664 33
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
.+...+.+|.++|.++..++++++|+.+|.+++.+
T Consensus 74 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 45667789999999999999999999999999874
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=8.9e-09 Score=108.86 Aligned_cols=132 Identities=17% Similarity=0.131 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC-------hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYH-------RMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 963 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dh-------pe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~ 963 (1888)
..+..+.+.|..++.+|+|++|+.+|++|+.+.....+..+ .....+|.++|.+|+.+|+|++|+.++++||.
T Consensus 11 ~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~ 90 (170)
T d1p5qa1 11 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 90 (170)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhh
Confidence 34788889999999999999999999999998554322222 23456788999999999999999999999998
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHH
Q 000191 964 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVA 1038 (1888)
Q Consensus 964 I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeA 1038 (1888)
+ +|....+|+++|.+|+.+|++++|+.+|++|+.+ .++++ .+...++.++..+++..+.
T Consensus 91 ~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l-----~P~n~---~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 91 L--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-----YPNNK---AAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp H--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSCH---HHHHHHHHHHHHHHHHHHH
T ss_pred c--------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHHHHHHH
Confidence 7 4667889999999999999999999999999986 34444 4455566666655554433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.92 E-value=4.4e-09 Score=109.39 Aligned_cols=126 Identities=17% Similarity=0.142 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh--------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHR--------MTAGAYSLLAVVLYHTGDFNQATIYQQKAL 962 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhp--------e~A~ay~~LA~ly~~lGdyeeAl~~~eKAL 962 (1888)
..+..+.+.|..++..|+|.+|+..|++|+.++......... ....++.++|.+|+.+|++++|+.++++||
T Consensus 15 ~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al 94 (153)
T d2fbna1 15 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 94 (153)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccc
Confidence 457788899999999999999999999999875443222221 234688999999999999999999999999
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC
Q 000191 963 DINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL 1032 (1888)
Q Consensus 963 ~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~l 1032 (1888)
.+ +|....+|+++|.+|..+|++++|+.+|++++.+ .+++ ..+...++.+...+
T Consensus 95 ~~--------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l-----~P~n---~~~~~~l~~~~~kl 148 (153)
T d2fbna1 95 KI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL-----NPNN---LDIRNSYELCVNKL 148 (153)
T ss_dssp HH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTC---HHHHHHHHHHHHHH
T ss_pred cc--------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHH
Confidence 87 5777899999999999999999999999999987 2344 44455566655443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.92 E-value=2.3e-09 Score=113.67 Aligned_cols=102 Identities=19% Similarity=0.215 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 1014 (1888)
Q Consensus 935 A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~d 1014 (1888)
+..+...|..|+..|+|++|+.+|++||.+ .|....+|.++|.+|..+|++++|+.+|++|+.+
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--------~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l-------- 67 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-------- 67 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--------
Confidence 456778999999999999999999999997 4677899999999999999999999999999875
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 1015 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 1015 hP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
.|..+.+|.++|.+|..+|++++|+.+|++|+++....
T Consensus 68 ~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~ 105 (201)
T d2c2la1 68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (201)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 46677889999999999999999999999999987543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=9.4e-09 Score=108.67 Aligned_cols=131 Identities=18% Similarity=0.182 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC-------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH-------PDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 934 ~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh-------p~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
.+..+...|..++..|+|++|+.+|++|+.+.....+..+ .....+|.++|.+|..+|+|++|+.++.+|+.+
T Consensus 12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~ 91 (170)
T d1p5qa1 12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 91 (170)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence 3567888999999999999999999999998654333222 123467889999999999999999999999986
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHH
Q 000191 1007 LHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLS 1080 (1888)
Q Consensus 1007 ~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeA 1080 (1888)
+|....+++++|.+|..+|+|++|+.+|++|+++. ++++ .+...++.++...++..+.
T Consensus 92 --------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-----P~n~---~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 92 --------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-----PNNK---AAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SSCH---HHHHHHHHHHHHHHHHHHH
T ss_pred --------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-----CCCH---HHHHHHHHHHHHHHHHHHH
Confidence 35567788999999999999999999999999873 4443 3455567776665555433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.90 E-value=8.5e-09 Score=108.61 Aligned_cols=130 Identities=17% Similarity=0.139 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC-------ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPY-------HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 963 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~d-------hpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~ 963 (1888)
..+..+.+.|..++..|+|.+|+.+|.+|+..+....... ......+|.++|.+|+.+|++++|+.++++++.
T Consensus 13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~ 92 (168)
T d1kt1a1 13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 92 (168)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh
Confidence 4578899999999999999999999999998765433221 233567888999999999999999999999998
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH
Q 000191 964 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH 1036 (1888)
Q Consensus 964 I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~ye 1036 (1888)
+ +|....+|+++|.+|..+|+|++|+.+|.+++.+ . |....+...++.+...++++.
T Consensus 93 l--------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l-----~---P~n~~~~~~l~~~~~~~~~~~ 149 (168)
T d1kt1a1 93 L--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV-----N---PQNKAARLQIFMCQKKAKEHN 149 (168)
T ss_dssp H--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----C---TTCHHHHHHHHHHHHHHHHHH
T ss_pred c--------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C---CCCHHHHHHHHHHHHHHHhHH
Confidence 7 5677899999999999999999999999999875 3 334455666777766655544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=1.1e-08 Score=101.46 Aligned_cols=111 Identities=15% Similarity=0.137 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 936 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 1015 (1888)
Q Consensus 936 ~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dh 1015 (1888)
.-+...|..++..|+|++|+.+|+++|.+ .|....+|.++|.+|..+|++++|+.+|.+++.+ .
T Consensus 4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~ 67 (117)
T d1elwa_ 4 NELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------K 67 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcchhhhhcccccccccccccccchhhhhHHHh--------c
Confidence 34567899999999999999999999987 5777889999999999999999999999999986 3
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 000191 1016 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIA 1070 (1888)
Q Consensus 1016 P~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~a 1070 (1888)
|....+|.++|.+|..+|++++|+.+|++++++. ++++ .++..++.+
T Consensus 68 p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-----p~~~---~~~~~l~~l 114 (117)
T d1elwa_ 68 PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE-----ANNP---QLKEGLQNM 114 (117)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----TTCH---HHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCCH---HHHHHHHHH
Confidence 5556789999999999999999999999999763 4443 444445544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.86 E-value=1.1e-08 Score=107.41 Aligned_cols=131 Identities=17% Similarity=0.120 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC--------CCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCG--------PYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKAL 962 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G--------~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL 962 (1888)
..+..+...|..++..|+|.+|+..|++|+.+...... ..++..+.++.++|.+|..+|+|++|+.++.+||
T Consensus 25 ~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al 104 (169)
T d1ihga1 25 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 104 (169)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhh
Confidence 34666778899999999999999999999986543211 1245677899999999999999999999999999
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHH
Q 000191 963 DINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHV 1037 (1888)
Q Consensus 963 ~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yee 1037 (1888)
.+ +|....+|+++|.+|..+|++++|+.+|++|+++ .++++ .+...++.++..+..+.+
T Consensus 105 ~~--------~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l-----~p~n~---~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 105 EI--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI-----APEDK---AIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp TT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHHHHHHHH
T ss_pred hh--------hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHHHHHH
Confidence 86 5777889999999999999999999999999996 33343 445666666655544443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.84 E-value=2.2e-08 Score=105.38 Aligned_cols=129 Identities=20% Similarity=0.216 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC-------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD-------HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 934 ~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D-------hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
.+..+...|..++..|+|.+|+.+|.+|+.+........ ......+|.|+|.||..+|++++|+.++.+++.+
T Consensus 14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l 93 (168)
T d1kt1a1 14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 93 (168)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence 356788899999999999999999999998865433221 2234567889999999999999999999999876
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChH
Q 000191 1007 LHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYP 1078 (1888)
Q Consensus 1007 ~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdyd 1078 (1888)
+|....+++++|.+|..+|+|++|+.+|++++.+. +++ ..+...++.+....+.+.
T Consensus 94 --------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-----P~n---~~~~~~l~~~~~~~~~~~ 149 (168)
T d1kt1a1 94 --------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-----PQN---KAARLQIFMCQKKAKEHN 149 (168)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-----TTC---HHHHHHHHHHHHHHHHHH
T ss_pred --------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHHHhHH
Confidence 45567788999999999999999999999988763 333 345556666665555443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.81 E-value=1.8e-08 Score=105.82 Aligned_cols=128 Identities=16% Similarity=0.126 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC--------CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000191 936 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL--------DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 1007 (1888)
Q Consensus 936 ~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~--------Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~ 1007 (1888)
..+...|..++..|+|.+|+..|++|+.+....... -.+..+.+|.++|.+|..+|+|++|+.+|.+|+++
T Consensus 28 ~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~- 106 (169)
T d1ihga1 28 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI- 106 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-
Confidence 345678889999999999999999999876543211 13556788999999999999999999999999975
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHH
Q 000191 1008 HLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPL 1079 (1888)
Q Consensus 1008 ~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdyde 1079 (1888)
+|..+.+++++|.+|..+|++++|+..|++|+++. ++. ..++..|+.++.....+.+
T Consensus 107 -------~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-----p~n---~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 107 -------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-----PED---KAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHHHHHHH
T ss_pred -------hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHHHHHHH
Confidence 46667889999999999999999999999999973 333 3345556666655544443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.80 E-value=1.2e-08 Score=105.87 Aligned_cols=124 Identities=16% Similarity=0.168 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh--------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP--------DTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 935 A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp--------~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
+..+...|..++..|+|.+|+..|++|+.+.......+.. ..+.+|.|+|.+|+.+|++++|+.++.+|+.+
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~ 96 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 96 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc
Confidence 4567778999999999999999999999876543322222 12467899999999999999999999999986
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHc
Q 000191 1007 LHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLM 1074 (1888)
Q Consensus 1007 ~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~l 1074 (1888)
+|....+|+++|.+|..+|++++|+.+|++++++. +++ ..+...++.+...+
T Consensus 97 --------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-----P~n---~~~~~~l~~~~~kl 148 (153)
T d2fbna1 97 --------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-----PNN---LDIRNSYELCVNKL 148 (153)
T ss_dssp --------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTC---HHHHHHHHHHHHHH
T ss_pred --------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHH
Confidence 46667899999999999999999999999999984 443 33444555554433
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.80 E-value=1.3e-08 Score=100.19 Aligned_cols=93 Identities=18% Similarity=0.107 Sum_probs=85.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000191 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 975 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ 975 (1888)
.+..|..++.+|++++|+..|++++.+ +|....+|..||.+|..+|++++|+.++++|+.+ +|.
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~ 82 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DPK 82 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhccc--------ccccchhhhhhhhhhhhhhhHHHhhccccccccc--------ccc
Confidence 367789999999999999999999987 4666789999999999999999999999999998 577
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000191 976 TMKSYGDLAVFYYRLQHTELALKYVKRAL 1004 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdyeeALey~~kAL 1004 (1888)
...++.+||.+|..+|++++|++++++.|
T Consensus 83 ~~~a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 83 DIAVHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 78999999999999999999999999976
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.75 E-value=1.7e-08 Score=99.39 Aligned_cols=94 Identities=16% Similarity=0.165 Sum_probs=86.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000191 937 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP 1016 (1888)
Q Consensus 937 ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP 1016 (1888)
..+.+|.+++..|++++|+..+++++.+ .|....+|.+||.+|...|++++|+.+|++|+.+ +|
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p 81 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DP 81 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhccc--------ccccchhhhhhhhhhhhhhhHHHhhccccccccc--------cc
Confidence 3567899999999999999999999987 4667899999999999999999999999999987 46
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 000191 1017 NTAATYINVAMMEEGLGNVHVALRYLHKAL 1046 (1888)
Q Consensus 1017 ~~a~a~~NLA~iy~~lG~yeeAle~LekAL 1046 (1888)
....++.++|.+|..+|++++|+++|++.|
T Consensus 82 ~~~~a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 82 KDIAVHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 667889999999999999999999999876
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=6.2e-09 Score=128.13 Aligned_cols=187 Identities=10% Similarity=-0.010 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH-----------
Q 000191 911 DAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS----------- 979 (1888)
Q Consensus 911 EAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~a----------- 979 (1888)
+|+++|++|+.+ .|..+.++.++|.+|..+|++++| |+++|.. ++..+..
T Consensus 4 eA~q~~~qA~~l--------~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--------dp~~a~~~~~e~~Lw~~~ 64 (497)
T d1ya0a1 4 QSAQYLRQAEVL--------KADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--------DLEYALDKKVEQDLWNHA 64 (497)
T ss_dssp HHHHHHHHHHHH--------HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--------CHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHc--------CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--------ChhhHHHHhHHHHHHHHH
Confidence 688999999987 355566778888888888888776 5555543 1111111
Q ss_pred HHHHHHHHHH-----------------cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Q 000191 980 YGDLAVFYYR-----------------LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYL 1042 (1888)
Q Consensus 980 y~nLA~ly~~-----------------lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~L 1042 (1888)
|.+....+.. .+...+|...|..++..+...++. .|.....+.++|.++...|++++|+..+
T Consensus 65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l-~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 143 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNV-DLPCRVKSSQLGIISNKQTHTSAIVKPQ 143 (497)
T ss_dssp THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------C
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHhHHHHHhCCCHHHHHHHH
Confidence 1111111111 112334455555555444443332 3455667778888888888888888888
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 000191 1043 HKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEA 1122 (1888)
Q Consensus 1043 ekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeA 1122 (1888)
++++... ...++.+||.++..+|+|++|+.+|++|+.+. |
T Consensus 144 ~~al~~~----------~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-----P------------------------- 183 (497)
T d1ya0a1 144 SSSCSYI----------CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-----P------------------------- 183 (497)
T ss_dssp CHHHHHH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T-------------------------
T ss_pred HHHhCCC----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----C-------------------------
Confidence 8887653 23467778888888888888888888877541 1
Q ss_pred HHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000191 1123 ARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1123 l~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
.....++.||.+|..+|++.+|+.+|.+|+.+...
T Consensus 184 ------------------~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~ 218 (497)
T d1ya0a1 184 ------------------SNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218 (497)
T ss_dssp ------------------TBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC
T ss_pred ------------------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Confidence 22346899999999999999999999999976554
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.65 E-value=1.7e-07 Score=107.85 Aligned_cols=57 Identities=12% Similarity=-0.038 Sum_probs=40.7
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1026 AMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1026 A~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
|.++...+++.+|+..+.+++ ..++..+.++..+|.+|..+|++++|+.+|++|+++
T Consensus 249 ~~~~~~~~~~~~a~~~~~~~~--------~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 249 VEKSTVLQSELESCKELQELE--------PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHH--------hhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 334444444444444444433 345778889999999999999999999999999865
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=5e-08 Score=98.10 Aligned_cols=111 Identities=18% Similarity=0.088 Sum_probs=84.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHhcCCC-C
Q 000191 898 ESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDF---NQATIYQQKALDINERELGLD-H 973 (1888)
Q Consensus 898 elG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdy---eeAl~~~eKAL~I~Er~lG~D-h 973 (1888)
.++..++..+++++|++.|+++|.+ .|....+++++|+++...++. ++|+.++++++.. + .
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~--------~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~-------~~~ 68 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-------GSK 68 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-------SCH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc-------cCC
Confidence 4456778889999999999999997 556677999999999875554 4566666666542 2 2
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 000191 974 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 1031 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~ 1031 (1888)
+....++++||.+|+.+|++++|+++|++++.+ .+++ ..+...++.+...
T Consensus 69 ~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~-----~P~~---~~A~~l~~~I~~~ 118 (122)
T d1nzna_ 69 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT-----EPQN---NQAKELERLIDKA 118 (122)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-----CcCC---HHHHHHHHHHHHH
Confidence 444678999999999999999999999999996 3444 4455555555443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=3.2e-07 Score=87.66 Aligned_cols=89 Identities=20% Similarity=0.332 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..++++|..++++|+|.+|+.+|++|+.+.... .......+.++.+||.+|+.+|++++|+.+|++||.+
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~-~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l-------- 75 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEG-EISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-------- 75 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhh-hccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh--------
Confidence 5678999999999999999999999999987653 2334566889999999999999999999999999998
Q ss_pred ChhhHHHHHHHHHHHHHc
Q 000191 973 HPDTMKSYGDLAVFYYRL 990 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~l 990 (1888)
.|+...++.||+.+...+
T Consensus 76 ~P~~~~a~~Nl~~~~~~l 93 (95)
T d1tjca_ 76 DPEHQRANGNLKYFEYIM 93 (95)
T ss_dssp CTTCHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHh
Confidence 466677888988776544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=4.2e-07 Score=111.49 Aligned_cols=192 Identities=9% Similarity=-0.013 Sum_probs=101.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 000191 941 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAA 1020 (1888)
Q Consensus 941 LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~ 1020 (1888)
++.++...+.|+.|+..+++++.+ .+.....+.++|..+...|++++|+..+.+++.+. ...
T Consensus 92 ~~~l~~a~~~Y~~ai~~l~~~~~l--------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----------~~~ 153 (497)
T d1ya0a1 92 SLFLEAASGFYTQLLQELCTVFNV--------DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI----------CQH 153 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHTC---------------------------------------CCHHHHHH----------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC--------ChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC----------HHH
Confidence 344444444455555444444433 35566788999999999999999999999988753 246
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCH
Q 000191 1021 TYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDL 1100 (1888)
Q Consensus 1021 a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~ 1100 (1888)
++.++|.++..+|+|++|+.+|++|+++. |..+.+|++||.+|...|++.+|+.+|.+|+.+ .+.++
T Consensus 154 ~~~~LG~l~~~~~~~~~A~~~y~~A~~l~--------P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~-----~~~~~ 220 (497)
T d1ya0a1 154 CLVHLGDIARYRNQTSQAESYYRHAAQLV--------PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-----KFPFP 220 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-----SBCCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC--------CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CCCCH
Confidence 78889999999999999999999999884 556678999999999999999999999999843 46665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhccc
Q 000191 1101 RTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 1176 (1888)
Q Consensus 1101 ~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi 1176 (1888)
... .+|..+..+.. ....... ...........+..+...+.....+++.....++.+......
T Consensus 221 ~a~---~nL~~~~~~~~-------~~~~~~~---~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 283 (497)
T d1ya0a1 221 AAS---TNLQKALSKAL-------ESRDEVK---TKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKEL 283 (497)
T ss_dssp HHH---HHHHHHHHHHT-------TSCCCCC---SSCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHhh-------hhhhhhc---cccccchHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Confidence 543 33333322111 1100000 011111233344455555566777777766666665544443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=6.2e-07 Score=89.93 Aligned_cols=107 Identities=9% Similarity=0.016 Sum_probs=85.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHhcCCCc
Q 000191 981 GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN---VHVALRYLHKALKCNQRLLGPDH 1057 (1888)
Q Consensus 981 ~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~---yeeAle~LekALei~ek~~G~d~ 1057 (1888)
.+|+..+...+++++|.+.|++|+.+ .|....+++|+|++|...++ +++|+.+|++++... ..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--------~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~------~~ 68 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG------SK 68 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS------CH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc------CC
Confidence 46788889999999999999999986 35556789999999987554 456888887776531 22
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 000191 1058 IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAA 1106 (1888)
Q Consensus 1058 ~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~ 1106 (1888)
+..+.++++||.+|..+|+|++|+.+|++++++ .|++.......
T Consensus 69 ~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~-----~P~~~~A~~l~ 112 (122)
T d1nzna_ 69 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT-----EPQNNQAKELE 112 (122)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-----CcCCHHHHHHH
Confidence 445678999999999999999999999999975 68887654443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.45 E-value=1.1e-05 Score=89.02 Aligned_cols=223 Identities=14% Similarity=0.121 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHh
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH----TGDFNQATIYQQKALDINERE 968 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~----lGdyeeAl~~~eKAL~I~Er~ 968 (1888)
+..++.+|..++.+|++.+|+.+|++|.+. ..+.++..||.+|.. ..++..|..+++++...
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~----------g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~---- 67 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL----------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL---- 67 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc----
Confidence 467899999999999999999999999654 124688999999997 67899999999887653
Q ss_pred cCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCHHHHHH
Q 000191 969 LGLDHPDTMKSYGDLAVFYYR----LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGNVHVALR 1040 (1888)
Q Consensus 969 lG~Dhp~ta~ay~nLA~ly~~----lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~----lG~yeeAle 1040 (1888)
....+..+||.++.. ..+.+.|+.+++++... | + ..+...+|..+.. ......|+.
T Consensus 68 ------~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~-----g--~---~~a~~~l~~~~~~~~~~~~~~~~a~~ 131 (265)
T d1ouva_ 68 ------NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-----K--Y---AEGCASLGGIYHDGKVVTRDFKKAVE 131 (265)
T ss_dssp ------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----T--C---HHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred ------cccchhhccccccccccccchhhHHHHHHHhhhhhh-----h--h---hhHHHhhcccccCCCcccchhHHHHH
Confidence 123556778887765 46789999999988752 2 2 2345567777764 445667777
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH--
Q 000191 1041 YLHKALKCNQRLLGPDHIQTAASYHAIAIALSLM----EAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES-- 1114 (1888)
Q Consensus 1041 ~LekALei~ek~~G~d~~~tA~al~nLA~ay~~l----GdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~q-- 1114 (1888)
++.++... .....+++||.+|... .+...+..+++.+.+ ..+.. +...|+.+..
T Consensus 132 ~~~~~~~~----------~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~-------~g~~~---A~~~lg~~y~~g 191 (265)
T d1ouva_ 132 YFTKACDL----------NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD-------LKDSP---GCFNAGNMYHHG 191 (265)
T ss_dssp HHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-------TTCHH---HHHHHHHHHHHT
T ss_pred Hhhhhhcc----------cccchhhhhhhhhccCCCcccccccchhhhhcccc-------ccccc---cccchhhhcccC
Confidence 77665443 1234677889998863 455566666665542 23333 3333433322
Q ss_pred ----HHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHhcc
Q 000191 1115 ----KAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDT----KGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1115 ----ka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~----qGdyeEAleyyeKALeL~dS 1175 (1888)
+..+.+....... ...+ ....++.||.+|.. ..++++|+.||++|...-..
T Consensus 192 ~~~~~d~~~A~~~~~~a-------a~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 192 EGATKNFKEALARYSKA-------CELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp CSSCCCHHHHHHHHHHH-------HHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred cccccchhhhhhhHhhh-------hccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 2344443333211 1111 13467899999975 44899999999999876433
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=5.6e-07 Score=85.92 Aligned_cols=88 Identities=22% Similarity=0.244 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 1014 (1888)
Q Consensus 935 A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~d 1014 (1888)
+.-++.||.+++.+|+|.+|+.+|++|+.+.... ....+..+.+|.+||.+|..+|++++|+.+|++|+++ .++
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~-~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l-----~P~ 78 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEG-EISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-----DPE 78 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhh-hccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh-----CcC
Confidence 4456799999999999999999999999987653 2334567899999999999999999999999999997 344
Q ss_pred ChhHHHHHHHHHHHHHH
Q 000191 1015 HPNTAATYINVAMMEEG 1031 (1888)
Q Consensus 1015 hP~~a~a~~NLA~iy~~ 1031 (1888)
| ..++.|++.+...
T Consensus 79 ~---~~a~~Nl~~~~~~ 92 (95)
T d1tjca_ 79 H---QRANGNLKYFEYI 92 (95)
T ss_dssp C---HHHHHHHHHHHHH
T ss_pred C---HHHHHHHHHHHHH
Confidence 4 5677888766544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.35 E-value=3.8e-07 Score=93.84 Aligned_cols=103 Identities=15% Similarity=0.127 Sum_probs=79.1
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHHHHhcCCC
Q 000191 903 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD----------FNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 903 ~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGd----------yeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+-..+.|++|+..|++|+.+ +|..+.++.++|.++..+++ +++|+..|++|+.+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~--------~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l-------- 70 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-------- 70 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHccHHHHHHHHHHHHhh--------CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--------
Confidence 34567799999999999988 67778899999999986544 56788888888876
Q ss_pred ChhhHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 000191 973 HPDTMKSYGDLAVFYYRLQH-----------TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMME 1029 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGd-----------yeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy 1029 (1888)
+|....+|++||.+|..+|+ |++|+++|++|+.+ +|.....+.+|+.+.
T Consensus 71 ~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--------~P~~~~~~~~L~~~~ 130 (145)
T d1zu2a1 71 DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--------QPDNTHYLKSLEMTA 130 (145)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH
T ss_pred cchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--------CCCHHHHHHHHHHHH
Confidence 57778899999999988764 57777777777775 344445556666654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.30 E-value=2.1e-05 Score=89.46 Aligned_cols=213 Identities=16% Similarity=0.066 Sum_probs=146.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 000191 898 ESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM 977 (1888)
Q Consensus 898 elG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta 977 (1888)
..+......|....+...+.++..++++......+.....+..++.++..+|++++|...|++++.. ......
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~-------~~~~~~ 134 (308)
T d2onda1 62 QSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI-------EDIDPT 134 (308)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-------SSSCTH
T ss_pred HcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-------hcCChH
Confidence 3344444555555555555555555444432223444567888899999999999999999998864 122334
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 978 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE-GLGNVHVALRYLHKALKCNQRLLGPD 1056 (1888)
Q Consensus 978 ~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~-~lG~yeeAle~LekALei~ek~~G~d 1056 (1888)
..+..++.++...|+++.|..+|.+|+.. . |.....+...|.... ..|+.+.|..+|++++..+ ++
T Consensus 135 ~~w~~~~~~~~~~~~~~~ar~i~~~al~~-----~---~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-----p~ 201 (308)
T d2onda1 135 LVYIQYMKFARRAEGIKSGRMIFKKARED-----A---RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-----GD 201 (308)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHTS-----T---TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-----TT
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh-----C---CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-----hh
Confidence 56778888999999999999999999863 2 333445666777644 5689999999999999875 33
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhh
Q 000191 1057 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIAS 1136 (1888)
Q Consensus 1057 ~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as 1136 (1888)
+ ...+..++..+...|+++.|...|++|+... +.++.
T Consensus 202 ~---~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~-----~~~~~----------------------------------- 238 (308)
T d2onda1 202 I---PEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-----SLPPE----------------------------------- 238 (308)
T ss_dssp C---HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS-----SSCGG-----------------------------------
T ss_pred h---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----CCChH-----------------------------------
Confidence 3 3456667888999999999999999887421 11100
Q ss_pred cCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1137 KGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1137 ~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
....++..........|+.+.+...++++.++.....
T Consensus 239 ----~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 239 ----KSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp ----GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred ----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 0112344444445667999999999999998876543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.30 E-value=5e-07 Score=92.98 Aligned_cols=104 Identities=13% Similarity=0.164 Sum_probs=78.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHHHhcCC
Q 000191 944 VLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRL----------QHTELALKYVKRALYLLHLTCGP 1013 (1888)
Q Consensus 944 ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~l----------GdyeeALey~~kALeL~~ki~G~ 1013 (1888)
.|.+++.|++|+..|++|+.+ +|..+.++.++|.+|..+ +.+++|+.+|++|+++
T Consensus 6 ~~~r~~~fe~A~~~~e~al~~--------~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l------- 70 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI------- 70 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHccHHHHHHHHHHHHhh--------CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh-------
Confidence 456677899999999999997 578889999999999855 4457888888888876
Q ss_pred CChhHHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 000191 1014 SHPNTAATYINVAMMEEGLGN-----------VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIAL 1071 (1888)
Q Consensus 1014 dhP~~a~a~~NLA~iy~~lG~-----------yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay 1071 (1888)
+|....+++++|.+|..+|+ |++|+.+|++|+++. ++ ....+..|+.+.
T Consensus 71 -~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~-----P~---~~~~~~~L~~~~ 130 (145)
T d1zu2a1 71 -DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ-----PD---NTHYLKSLEMTA 130 (145)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHH
T ss_pred -cchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC-----CC---HHHHHHHHHHHH
Confidence 46667889999999987754 567777777777663 33 334455555554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.04 E-value=2.1e-05 Score=83.57 Aligned_cols=117 Identities=16% Similarity=-0.005 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC--------------CChhHHHHHHHHHHHHHhcCCHHHHH
Q 000191 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP--------------YHRMTAGAYSLLAVVLYHTGDFNQAT 955 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~--------------dhpe~A~ay~~LA~ly~~lGdyeeAl 955 (1888)
......++..|..+...|++++|+.+|.+||.++...+-. ..+....++..++.++..+|++++|+
T Consensus 8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al 87 (179)
T d2ff4a2 8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI 87 (179)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence 3446778889999999999999999999999874311100 01334568899999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 956 IYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 1014 (1888)
Q Consensus 956 ~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~d 1014 (1888)
.++++++.+ +|..-.+|.+|+.+|..+|++.+|+..|+++...+..-+|-+
T Consensus 88 ~~~~~al~~--------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~ 138 (179)
T d2ff4a2 88 AELEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID 138 (179)
T ss_dssp HHHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999997 677889999999999999999999999999999887766765
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.04 E-value=3.9e-05 Score=87.10 Aligned_cols=170 Identities=11% Similarity=0.033 Sum_probs=129.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000191 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 975 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ 975 (1888)
.+..+.....+|++++|...|.+++.. .......++..++.+....|+++.|...|.+|+.. .+.
T Consensus 102 ~~~ya~~~~~~~~~~~a~~i~~~~l~~-------~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~--------~~~ 166 (308)
T d2onda1 102 YFAYADYEESRMKYEKVHSIYNRLLAI-------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--------ART 166 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTS-------SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--------TTC
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH-------hcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCC
Confidence 344567778899999999999998864 12223356788889999999999999999999764 244
Q ss_pred hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 000191 976 TMKSYGDLAVFYY-RLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054 (1888)
Q Consensus 976 ta~ay~nLA~ly~-~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G 1054 (1888)
....+...|.... ..|+.+.|..+|++++... |.....+...+.++...|+++.|+.+|++|+...
T Consensus 167 ~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--------p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~----- 233 (308)
T d2onda1 167 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG----- 233 (308)
T ss_dssp CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS-----
T ss_pred cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----
Confidence 4566777787654 4689999999999999853 3335667778899999999999999999998754
Q ss_pred CCcH-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000191 1055 PDHI-QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 1093 (1888)
Q Consensus 1055 ~d~~-~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk 1093 (1888)
+.++ ....++..........|+.+.+...++++.+++..
T Consensus 234 ~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~ 273 (308)
T d2onda1 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcc
Confidence 1122 23345556667777889999999999999887643
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.94 E-value=3.1e-05 Score=82.29 Aligned_cols=117 Identities=13% Similarity=-0.009 Sum_probs=97.8
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC--------------ChhHHHHHHHHHHHHHHCCCHHHHHH
Q 000191 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS--------------HPNTAATYINVAMMEEGLGNVHVALR 1040 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~d--------------hP~~a~a~~NLA~iy~~lG~yeeAle 1040 (1888)
.....+.+.|......|++++|+.+|.+|+.++.--...+ .+....++.+++.++..+|++++|+.
T Consensus 9 ~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~ 88 (179)
T d2ff4a2 9 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA 88 (179)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence 3456788999999999999999999999999864211110 12345678999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC
Q 000191 1041 YLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDD 1099 (1888)
Q Consensus 1041 ~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh 1099 (1888)
++++++++. |....++..|+.+|...|++.+|+..|+++...+...+|.+-
T Consensus 89 ~~~~al~~~--------P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P 139 (179)
T d2ff4a2 89 ELEALTFEH--------PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP 139 (179)
T ss_dssp HHHHHHHHS--------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHhC--------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCc
Confidence 999999873 455678899999999999999999999999999999888763
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.93 E-value=0.00014 Score=79.73 Aligned_cols=188 Identities=16% Similarity=0.097 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHh
Q 000191 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR----LQHTELALKYVKRALYLLHLT 1010 (1888)
Q Consensus 935 A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~----lGdyeeALey~~kALeL~~ki 1010 (1888)
+.++.+||..++..+++.+|+.+|++|.+. | ...++.+||.+|.. ..++..|..+++.+...
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~-----g-----~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~---- 67 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL-----K-----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL---- 67 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----T-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-----C-----CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc----
Confidence 358899999999999999999999999653 2 35688999999998 67899999999987752
Q ss_pred cCCCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH----cCChHHHHH
Q 000191 1011 CGPSHPNTAATYINVAMMEEG----LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL----MEAYPLSVQ 1082 (1888)
Q Consensus 1011 ~G~dhP~~a~a~~NLA~iy~~----lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~----lGdydeAle 1082 (1888)
.++ .+..++|.++.. ..+.+.|+.+++++.+. | ...+...|+..+.. ......|..
T Consensus 68 ---~~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~-----g-----~~~a~~~l~~~~~~~~~~~~~~~~a~~ 131 (265)
T d1ouva_ 68 ---NYS---NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-----K-----YAEGCASLGGIYHDGKVVTRDFKKAVE 131 (265)
T ss_dssp ---TCH---HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----T-----CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred ---ccc---chhhccccccccccccchhhHHHHHHHhhhhhh-----h-----hhhHHHhhcccccCCCcccchhHHHHH
Confidence 344 345667877765 46788999999988753 1 12345566777765 334455555
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH------HHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHH-
Q 000191 1083 HEQTTLQILRAKLGPDDLRTQDAAAWLEYFESK------AFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDT- 1155 (1888)
Q Consensus 1083 ~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qk------a~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~- 1155 (1888)
.+.+.. ...+.... ..|+.+... ............ ... .....+..||.+|..
T Consensus 132 ~~~~~~-------~~~~~~~~---~~L~~~~~~~~~~~~~~~~~~~~~~~a-------~~~---g~~~A~~~lg~~y~~g 191 (265)
T d1ouva_ 132 YFTKAC-------DLNDGDGC---TILGSLYDAGRGTPKDLKKALASYDKA-------CDL---KDSPGCFNAGNMYHHG 191 (265)
T ss_dssp HHHHHH-------HTTCHHHH---HHHHHHHHHTSSSCCCHHHHHHHHHHH-------HHT---TCHHHHHHHHHHHHHT
T ss_pred Hhhhhh-------cccccchh---hhhhhhhccCCCcccccccchhhhhcc-------ccc---cccccccchhhhcccC
Confidence 554433 23333322 222222211 111111111000 011 124567889999877
Q ss_pred ---cCChHHHHHHHHHHHHH
Q 000191 1156 ---KGRNVSTLKRKTYVAKV 1172 (1888)
Q Consensus 1156 ---qGdyeEAleyyeKALeL 1172 (1888)
..++++|+.+|+++.+.
T Consensus 192 ~~~~~d~~~A~~~~~~aa~~ 211 (265)
T d1ouva_ 192 EGATKNFKEALARYSKACEL 211 (265)
T ss_dssp CSSCCCHHHHHHHHHHHHHT
T ss_pred cccccchhhhhhhHhhhhcc
Confidence 77999999999999875
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.92 E-value=7.3e-06 Score=92.60 Aligned_cols=127 Identities=14% Similarity=0.079 Sum_probs=102.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 000191 900 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS 979 (1888)
Q Consensus 900 G~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~a 979 (1888)
++.++.+|++++|+..|+++++. +|..+.++..||.+|...|++++|+..+++++.+ .|....+
T Consensus 3 ~~~aL~~G~l~eAl~~l~~al~~--------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--------~P~~~~~ 66 (264)
T d1zbpa1 3 WKNALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--------FPEYLPG 66 (264)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CGGGHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCcHHH
Confidence 46677899999999999999986 6788889999999999999999999999999987 5777788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 980 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 980 y~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
+..++.++...+..+++...+.+.. -..+|.....+...+.++...|++++|+..++++++..
T Consensus 67 ~~~l~~ll~a~~~~~~a~~~~~~~~-------~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 67 ASQLRHLVKAAQARKDFAQGAATAK-------VLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCCEE-------CCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccHHHHHHhhhhh-------cccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 8888888776666555543322221 12345666677788999999999999999999998874
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.53 E-value=0.00025 Score=79.76 Aligned_cols=124 Identities=8% Similarity=-0.048 Sum_probs=95.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 000191 944 VLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYI 1023 (1888)
Q Consensus 944 ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~ 1023 (1888)
-.+..|++++|+..++++++. +|....++.+||.+|...|++++|+..|++++++ +|....++.
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~--------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--------~P~~~~~~~ 68 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--------FPEYLPGAS 68 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CGGGHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCcHHHHH
Confidence 456789999999999999986 6888899999999999999999999999999986 466667777
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1024 NVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1024 NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
+++.++...+..+++...+. ...-...+.....+...+.++...|++++|...++++.++
T Consensus 69 ~l~~ll~a~~~~~~a~~~~~-------~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 69 QLRHLVKAAQARKDFAQGAA-------TAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-------CEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccHHHHHHhh-------hhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 77877765544444332221 1111223445566777899999999999999999888765
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.27 E-value=0.00071 Score=67.46 Aligned_cols=109 Identities=18% Similarity=0.147 Sum_probs=83.9
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 000191 908 KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFY 987 (1888)
Q Consensus 908 d~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly 987 (1888)
++++|+.+|++|.+. .++ .++..|+. ....++++|+.++++|.+. ....++++||.+|
T Consensus 8 d~~~A~~~~~kaa~~-------g~~---~a~~~l~~--~~~~~~~~a~~~~~~aa~~----------g~~~a~~~Lg~~y 65 (133)
T d1klxa_ 8 DLKKAIQYYVKACEL-------NEM---FGCLSLVS--NSQINKQKLFQYLSKACEL----------NSGNGCRFLGDFY 65 (133)
T ss_dssp HHHHHHHHHHHHHHT-------TCT---THHHHHHT--CTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-------CCh---hhhhhhcc--ccccCHHHHHHHHhhhhcc----------cchhhhhhHHHhh
Confidence 688999999998764 122 24555654 4567899999999998763 2356788999999
Q ss_pred HH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Q 000191 988 YR----LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 988 ~~----lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~----lG~yeeAle~LekALei 1048 (1888)
.. ..++++|+++|++|.+. .+ ..+..+||.+|.. ..++++|+.||++|.+.
T Consensus 66 ~~g~~~~~d~~~A~~~~~~aa~~-------g~---~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 66 ENGKYVKKDLRKAAQYYSKACGL-------ND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 124 (133)
T ss_dssp HHCSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred hhccccchhhHHHHHHHhhhhcc-------Cc---chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence 87 56789999999999763 23 3567889999987 56899999999999764
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.09 E-value=0.0009 Score=66.69 Aligned_cols=108 Identities=15% Similarity=0.117 Sum_probs=81.9
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 000191 950 DFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMME 1029 (1888)
Q Consensus 950 dyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy 1029 (1888)
|+++|+.+|++|.+. | ++ .++.+|+. ....++++|+.+|+++.+. ++ ..++++||.+|
T Consensus 8 d~~~A~~~~~kaa~~-----g--~~---~a~~~l~~--~~~~~~~~a~~~~~~aa~~-------g~---~~a~~~Lg~~y 65 (133)
T d1klxa_ 8 DLKKAIQYYVKACEL-----N--EM---FGCLSLVS--NSQINKQKLFQYLSKACEL-------NS---GNGCRFLGDFY 65 (133)
T ss_dssp HHHHHHHHHHHHHHT-----T--CT---THHHHHHT--CTTSCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-----C--Ch---hhhhhhcc--ccccCHHHHHHHHhhhhcc-------cc---hhhhhhHHHhh
Confidence 678999999999763 2 22 34555653 4457899999999998762 34 35678899999
Q ss_pred HH----CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHH
Q 000191 1030 EG----LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL----MEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1030 ~~----lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~----lGdydeAle~lqkALe 1089 (1888)
.. ..++++|+++|++|.+.- ...+.++||.+|.. ..++.+|+.+|++|.+
T Consensus 66 ~~g~~~~~d~~~A~~~~~~aa~~g----------~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~ 123 (133)
T d1klxa_ 66 ENGKYVKKDLRKAAQYYSKACGLN----------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 123 (133)
T ss_dssp HHCSSSCCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred hhccccchhhHHHHHHHhhhhccC----------cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence 86 567999999999997641 24567889999987 4689999999999874
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.55 E-value=0.047 Score=54.01 Aligned_cols=78 Identities=10% Similarity=0.072 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 000191 1019 AATYINVAMMEEGLGNV---HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL 1095 (1888)
Q Consensus 1019 a~a~~NLA~iy~~lG~y---eeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~L 1095 (1888)
..+.++.|+++....+. ++|+.+|+++++. +......++++||.+|..+|+|++|..++++++++
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-------~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i----- 102 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH----- 102 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc-----
Confidence 57889999999977554 5677777766643 12234579999999999999999999999999976
Q ss_pred CCCCHHHHHHHHH
Q 000191 1096 GPDDLRTQDAAAW 1108 (1888)
Q Consensus 1096 G~dh~~tl~a~~~ 1108 (1888)
.|++.........
T Consensus 103 eP~n~qA~~L~~~ 115 (124)
T d2pqrb1 103 ERNNKQVGALKSM 115 (124)
T ss_dssp CTTCHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 5888766544443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.94 E-value=0.06 Score=53.23 Aligned_cols=65 Identities=14% Similarity=0.054 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 935 AGAYSLLAVVLYHTGDF---NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 935 A~ay~~LA~ly~~lGdy---eeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
..+.+++|+++.+..+. .+|+.++++++.. +......++++||..|+.+|+|++|+.++.++|++
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-------~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 56888899988876544 4555555555432 22344589999999999999999999999999997
|
| >d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Ubiquitin-like N-terminal domain of PLIC-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.82 E-value=0.1 Score=49.75 Aligned_cols=69 Identities=16% Similarity=0.274 Sum_probs=54.7
Q ss_pred cCeEEEEEEEcCCCCceEEEcc-ChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEe
Q 000191 22 LPVVLDITVNLPDDTRVILKGI-STDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLT 95 (1888)
Q Consensus 22 ~~~~~~itv~lP~~~~~~~~~i-s~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lV 95 (1888)
.|..++|+|+++.+.. .+ .| ..++|.++++.|......+. .+.-|.+ +|..|+|...|.+.+ ||+|.||
T Consensus 29 ~~~~i~V~Vk~~~~~~-~i-~V~~~~tV~~LK~~I~~~~gi~~-~~qrLi~--~Gk~L~D~~tL~~~~I~~g~~I~lv 101 (103)
T d1j8ca_ 29 EPKIIKVTVKTPKEKE-EF-AVPENSSVQQFKEAISKRFKSQT-DQLVLIF--AGKILKDQDTLIQHGIHDGLTVHLV 101 (103)
T ss_dssp CCCCEEEEEECSSCEE-EE-EECTTCCHHHHHHHHHHHHCSCS-SSEEEEE--TTEEESTTSCGGGTTCSSSEEEEEE
T ss_pred CCCeEEEEEECCCccE-EE-EECCCChHHHHHHHHHHHHCcCH-HHeeeee--eeecccCCCcHHHcCCCCCCEEEEE
Confidence 4668999999998653 33 45 55999999999999876554 6677775 999999988888753 7999987
|
| >d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Ubiquilin-3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.45 E-value=0.12 Score=47.36 Aligned_cols=71 Identities=21% Similarity=0.234 Sum_probs=54.7
Q ss_pred cCeEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc---cCceeEEec
Q 000191 22 LPVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL---KPCVLSLTE 96 (1888)
Q Consensus 22 ~~~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l---k~~~L~lVe 96 (1888)
-|..++|+|+++.+.. .+..-+.++|.++++.|...... ......|.| +|..|+|.-.|++. +|++|.||-
T Consensus 4 ~~~~i~I~Vkt~~~~~-~~~V~~~~tV~~lK~~i~~~~gi-~~~~qrL~~--~Gk~L~D~~tL~~y~i~~gsti~lv~ 77 (84)
T d1yqba1 4 SPHLIKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKA-HPDQLVLIF--AGKILKDPDSLAQCGVRDGLTVHLVI 77 (84)
T ss_dssp CTTEEEEEEECSSCEE-EEEEETTCBHHHHHHHHHHHHTC-CGGGEEEEE--TTEECCTTSBHHHHTCCTTCEEEEEE
T ss_pred CCCEEEEEEEcCCCcE-EEEECCCCcHHHHHHHHHHHHCc-CchhEEEEE--eeeeccccCcHHHcCCCCCCEEEEEE
Confidence 3679999999997754 33333669999999999987644 445566765 99999998878775 389999885
|
| >d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Rub1 species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=89.92 E-value=0.19 Score=44.60 Aligned_cols=66 Identities=18% Similarity=0.137 Sum_probs=52.9
Q ss_pred EEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEe
Q 000191 27 DITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLT 95 (1888)
Q Consensus 27 ~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lV 95 (1888)
.|+|+++.+....+..-++|+|.++++.|.+... +.-..+.|.+ +|..|+|...+++.+ |++|+||
T Consensus 2 ~I~Vk~~~G~~~~l~V~~~~tV~~lK~~i~~~~g-i~~~~qrLi~--~Gk~L~d~~tL~~y~I~~~sti~lv 70 (73)
T d1bt0a_ 2 LIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEG-IPPVQQRLIY--AGKQLADDKTAKDYNIEGGSVLHLV 70 (73)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHC-CCGGGEEEEE--TTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhC-CChHHEEEEE--CCeEcCCCCcHHHcCCCCCCEEEEE
Confidence 6999999987666554466999999999998665 4557777875 999999988888753 7999887
|
| >d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Dendritic cell-derived ubiquitin-like protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.66 E-value=0.2 Score=45.46 Aligned_cols=68 Identities=19% Similarity=0.221 Sum_probs=53.9
Q ss_pred EEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEe
Q 000191 25 VLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLT 95 (1888)
Q Consensus 25 ~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lV 95 (1888)
-++|+|++..+....+..-+.|+|.+|++.|..... +......|.+ +|..|+|...|++.+ |++|+||
T Consensus 3 e~qi~Vk~~~G~~~~l~V~~~~tV~~lK~~I~~~~~-ip~~~qrLi~--~Gk~L~d~~tL~~y~I~~~sti~lv 73 (80)
T d1ttna1 3 ECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEG-VEPGSQRWFF--SGRPLTDKMKFEELKIPKDYVVQVI 73 (80)
T ss_dssp SEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTC-CCSTTCEEEE--TTEECCTTSHHHHCCCSSSCEEEEE
T ss_pred eEEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhC-CCcccEEEEE--CceEcCCCCcHHHcCCCCCCEEEEE
Confidence 478999999876666654577999999999998654 5666777875 999999987777743 7999986
|
| >d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Interferon-induced 15 kDa protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.06 E-value=0.23 Score=44.64 Aligned_cols=69 Identities=16% Similarity=0.168 Sum_probs=53.0
Q ss_pred EEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEe
Q 000191 26 LDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLT 95 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lV 95 (1888)
|+|+|++..+....+..-++++|.+|++.|..... ++-..--|.+..+|..|.|...+++.. |++|.||
T Consensus 1 ~~l~Vk~l~G~~~~v~V~~~~tV~~lK~~I~~~~g-ip~~~QrLi~~~~Gk~L~D~~tL~~y~i~~g~~i~lv 72 (76)
T d1z2ma1 1 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIG-VHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLV 72 (76)
T ss_dssp CEEEEEESSSCEEEEECCSSCCHHHHHHHHHHHHC-CCGGGEEEEEETTCCBCCSSSCSGGGTCCTTCEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhc-cCCccEEEEEcCCCeeccCCCcHHHcCCCCCCEEEEE
Confidence 68999999988877665577999999999998654 344444565433799999988888753 7999887
|
| >d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: zeta isoform species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.02 E-value=7.8 Score=41.40 Aligned_cols=156 Identities=13% Similarity=0.123 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh-hHH-----------HHHHHHHHHHHhc-CC--H--------
Q 000191 895 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHR-MTA-----------GAYSLLAVVLYHT-GD--F-------- 951 (1888)
Q Consensus 895 ~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhp-e~A-----------~ay~~LA~ly~~l-Gd--y-------- 951 (1888)
.+..+|+.+-+.++|++.+.+..++...-... ..... ... .+|+.+..+-... |+ .
T Consensus 5 ~~v~~Aklaeq~eRy~dm~~~mk~~~~~~~eL-t~eERnLlsvayKn~i~~rR~s~R~l~~ie~k~~~~~~~~~~i~~yk 83 (230)
T d2o02a1 5 ELVQKAKLAEQAERYDDMAACMKSVTEQGAEL-SNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTEGAEKKQQMAREYR 83 (230)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHH
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHcCcchhhHHHHHHH
Confidence 46677888889999999999998877541000 00000 011 1222222221111 11 1
Q ss_pred ----HHHHHHHHHHHHHHHHhcC--CCChhhH-HHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHhcCCC
Q 000191 952 ----NQATIYQQKALDINERELG--LDHPDTM-KSYGDLAVFYYRLQH----------TELALKYVKRALYLLHLTCGPS 1014 (1888)
Q Consensus 952 ----eeAl~~~eKAL~I~Er~lG--~Dhp~ta-~ay~nLA~ly~~lGd----------yeeALey~~kALeL~~ki~G~d 1014 (1888)
.+=..++...+.+....+- ..++... ..+-..|.+|...-. .+.|...|++|+++....+.+.
T Consensus 84 ~kie~EL~~~C~dil~lid~~Lip~~~~~eskvFy~KmkgDy~RY~aE~~~~~e~~~~~~~a~~aY~~A~~~A~~~L~~t 163 (230)
T d2o02a1 84 EKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPT 163 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHcchHHHHHhhcCccCCCchhhhhHHHhcccHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 1112233444444433221 1223322 233344665554422 2579999999999998888899
Q ss_pred ChhHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHH
Q 000191 1015 HPNTAATYINVAMMEE-GLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 1015 hP~~a~a~~NLA~iy~-~lG~yeeAle~LekALei~ek 1051 (1888)
||..+....|.+..|. -+++.++|++..++|++-...
T Consensus 164 ~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd~ai~ 201 (230)
T d2o02a1 164 HPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIA 201 (230)
T ss_dssp CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 9999988888888866 578999999999998876543
|
| >d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Large proline-rich protein BAT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.81 E-value=0.18 Score=44.92 Aligned_cols=68 Identities=15% Similarity=0.166 Sum_probs=52.3
Q ss_pred EEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccc--ccCceeEEec
Q 000191 26 LDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAA--LKPCVLSLTE 96 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~--lk~~~L~lVe 96 (1888)
++|+|++.++....+..-++++|.|+++.|.+.... .-....|.+ +|..|+|--.+.+ +++++|+||-
T Consensus 1 m~I~Vk~~~g~~~~l~V~~~~tV~~lK~~I~~~~gi-p~~~qrLi~--~Gk~L~d~~tL~dy~i~~~ti~lv~ 70 (73)
T d1wx9a1 1 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSI-PSEKQRLIY--QGRVLQDDKKLQEYNVGGKVIHLVE 70 (73)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHCC-CTTTCCCEE--TTEECCSSSBHHHHTCTTEEEBCCC
T ss_pred CEEEEEcCCCCEEEEEECCCChHHHHHHHHHHHhCC-ChHHEEEEE--CCeEccCCCCHHHhCCCCCEEEEEe
Confidence 589999998776665544669999999999997653 445556765 9999999776666 4589988874
|
| >d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Interferon-induced 15 kDa protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.80 E-value=0.31 Score=43.54 Aligned_cols=69 Identities=14% Similarity=0.119 Sum_probs=54.7
Q ss_pred eEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEe
Q 000191 24 VVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLT 95 (1888)
Q Consensus 24 ~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lV 95 (1888)
..++|+|+++.+....+..-+.|+|.+|++.|.+...... .-..|.+ +|..|+|...+++.. |++|+||
T Consensus 2 ~~~qi~Vk~~~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~-~~qrL~~--~gk~L~d~~tL~~y~I~~~sti~l~ 73 (76)
T d1z2ma2 2 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQD-DLFWLTF--EGKPLEDQLPLGEYGLKPLSTVFMN 73 (76)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCG-GGEEEEE--TTEECCTTSBGGGGTCCTTCEEEEE
T ss_pred CCEEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHhcCCh-hHeEEEE--CCeECCCCCcHHHcCCCCCCEEEEE
Confidence 3689999999987666665567999999999999876543 4555765 999999988888753 7888886
|
| >d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: 4931431F19Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.45 E-value=0.26 Score=44.91 Aligned_cols=70 Identities=11% Similarity=0.152 Sum_probs=53.3
Q ss_pred cCeEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc---cCceeEEe
Q 000191 22 LPVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL---KPCVLSLT 95 (1888)
Q Consensus 22 ~~~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l---k~~~L~lV 95 (1888)
-...++|+|++|.+.. .+..-.+++|.++++.|....... -....|.+ +|..|+|...|++. .||+|.||
T Consensus 7 ~~~~i~v~Vk~~~~~~-~i~v~~~~tV~~lK~~I~~~~~v~-~~~qrL~f--~Gk~L~d~~tL~~~gI~~gs~I~lv 79 (83)
T d1wx8a1 7 SSRIIRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCN-ADRLVLIF--TGKILRDQDILSQRGILDGSTVHVV 79 (83)
T ss_dssp CSCEEEEEEECSSSEE-EEEEETTCCHHHHHHHHHHHTCSC-TTTBCCEE--TTEECCTTSCHHHHTCCTTEEEECC
T ss_pred CCCeEEEEEEcCCCcE-EEEECCCChHHHHHHHHHHHhCCC-hhHEEEEE--EhhccccCCcHHHcCCCCCCEEEEE
Confidence 4557999999997653 332235699999999999976544 46677775 99999998777775 37999887
|
| >d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: 2'-5'-oligoadenylate synthetase-like protein, OASL species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.67 E-value=0.29 Score=44.95 Aligned_cols=70 Identities=14% Similarity=0.165 Sum_probs=54.2
Q ss_pred eEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc---cCceeEEec
Q 000191 24 VVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL---KPCVLSLTE 96 (1888)
Q Consensus 24 ~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l---k~~~L~lVe 96 (1888)
.-++|+|+++......+..-..|+|.+|++.|.+... +.-...-|.+ +|..|+|...+.+. ++++|+|+-
T Consensus 6 ~~mqI~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g-ip~~~qrLi~--~Gk~L~d~~tL~~y~I~~~stl~l~~ 78 (87)
T d1wh3a_ 6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQG-LPKKQQQLEF--QGQVLQDWLGLGIYGIQDSDTLILSK 78 (87)
T ss_dssp SSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTC-CCTTTEEEEE--TTEECCSSSBHHHHTCCTTEEEEEEE
T ss_pred CcEEEEEECCCCCEEEEEECCcCcHHHHHHHHHHHHC-cChHHeEEEe--eceEcCCCCcHHHcCCCCCCEEEEEe
Confidence 4589999999976555544466999999999998655 4456667775 99999998877774 379999874
|
| >d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Ubiquitin-like protein bab25500 (2010008E23Rik) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.66 E-value=0.39 Score=45.05 Aligned_cols=66 Identities=17% Similarity=0.277 Sum_probs=50.3
Q ss_pred eEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccC-Cccccccc---cCceeEEe
Q 000191 24 VVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLK-DAVDVAAL---KPCVLSLT 95 (1888)
Q Consensus 24 ~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~-d~~ei~~l---k~~~L~lV 95 (1888)
+-++|+||+.++....+..=.+++|.+|++.|..-+.. ...|.+ +|..|. |.-.|.+. .||+|+||
T Consensus 6 s~m~i~vK~l~~~~~~v~v~~~~TV~~lK~~i~~~~~~----~qrLi~--~Gk~L~dd~~tL~~y~i~~g~~v~l~ 75 (95)
T d1wiaa_ 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQES----QMKLIY--QGRLLQDPARTLSSLNITNNCVIHCH 75 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSSTTT----TCEEEE--TTEECCCSSCBTTTTTCCTTEEEEEE
T ss_pred CcEEEEEEcCCCCEEEEEECCcCcHHHHHHHHhcCCcc----eeEEEE--CCEEcccCCCCHHHcCCCCCCEEEEE
Confidence 45899999999887776554669999999999765553 445765 999994 65567764 37999987
|
| >d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B) species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.77 E-value=0.54 Score=43.72 Aligned_cols=68 Identities=7% Similarity=0.134 Sum_probs=50.6
Q ss_pred EEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCc--ccccccccccccCCCccCCccccccc---cCceeEEe
Q 000191 26 LDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTET--CSITNFSLSHEIRGPRLKDAVDVAAL---KPCVLSLT 95 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~T--c~~T~fsL~~~~~G~~L~d~~ei~~l---k~~~L~lV 95 (1888)
.+|+|++..+....+..-++|+|.+|++.|.+.... ..-...-|-+ +|..|+|-..|.+. +|++|.||
T Consensus 1 M~I~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~~~~i~~~~qrLi~--~Gk~L~d~~tL~~y~I~~~s~i~lv 73 (95)
T d1uela_ 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIY--AGKILNDDTALKEYKIDEKNFVVVM 73 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEE--TTEECCTTSBGGGGTCCSSSEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCccHHHHHHHHHhhhcccCCCccceEEEE--CCeEccCCCcHHHcCCCCCCEEEEE
Confidence 379999998765555444669999999999876543 3344566764 99999998778775 37888876
|
| >d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Splicing factor 3 subunit 1, C-terminal domain species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=84.52 E-value=0.47 Score=45.73 Aligned_cols=71 Identities=20% Similarity=0.275 Sum_probs=53.5
Q ss_pred CeEEEEEEEcCC--CCceEEEcc-C-hhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEe
Q 000191 23 PVVLDITVNLPD--DTRVILKGI-S-TDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLT 95 (1888)
Q Consensus 23 ~~~~~itv~lP~--~~~~~~~~i-s-~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lV 95 (1888)
|..+.|+|..|. ..+++...+ + +|+|.+|++.|.+... ++.....|.+ +|..|+|-..+++.. |++|.||
T Consensus 25 ~g~~ti~V~v~~~~~G~~i~l~v~~~sdtV~~lK~~I~~~~g-ip~~~QrLi~--~Gk~L~D~~tL~~ynI~~gsti~L~ 101 (111)
T d1we6a_ 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQ-IPANKQKLSG--KAGFLKDNMSLAHYNVGAGEILTLS 101 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTT-CCTTTSEEEC--SSSBCCTTSBTTTTTCSSSCEEEEE
T ss_pred CCCEEEEEEcccCCCCeEEEEEecCCccHHHHHHHHHHHHHC-CCccceEEEE--eeEEccccCCHHHcCCCCCCEEEEE
Confidence 445555666554 456666655 6 7999999999999764 7778888886 999999988887753 7999887
Q ss_pred c
Q 000191 96 E 96 (1888)
Q Consensus 96 e 96 (1888)
-
T Consensus 102 l 102 (111)
T d1we6a_ 102 L 102 (111)
T ss_dssp C
T ss_pred e
Confidence 3
|
| >d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: DSK2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.30 E-value=0.55 Score=41.59 Aligned_cols=67 Identities=16% Similarity=0.242 Sum_probs=52.1
Q ss_pred EEEEEEEcCCCCceEEEcc-ChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000191 25 VLDITVNLPDDTRVILKGI-STDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 25 ~~~itv~lP~~~~~~~~~i-s~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
.++|+|+.+.+. ....| ++|+|.++++.|.+... .+.....|-+ +|..|+|-..+.+.. |++|.||-
T Consensus 1 si~I~Vk~~~~~--~~i~v~~~~tV~~lK~~I~~~~g-ip~~~qrLi~--~Gk~L~D~~tL~~~~I~~g~~i~lV~ 71 (73)
T d2bwfa1 1 SLNIHIKSGQDK--WEVNVAPESTVLQFKEAINKANG-IPVANQRLIY--SGKILKDDQTVESYHIQDGHSVHLVK 71 (73)
T ss_dssp EEEEEEEETTEE--EEEEECTTCBHHHHHHHHHHHHC-CCGGGEEEEE--TTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred CEEEEEEeCCeE--EEEEECCCChHHHHHHHHHHHHC-cChHHeEEEE--CCeEccCCCcHHHCCCCCCCEEEEEe
Confidence 378999998654 33445 55999999999999764 5667777875 999999988788753 79999984
|
| >d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Ubiquitin species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.04 E-value=0.57 Score=41.71 Aligned_cols=68 Identities=18% Similarity=0.203 Sum_probs=53.4
Q ss_pred EEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000191 26 LDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
++|+|++++.....+..-.+++|.++++.|..... +.-....|.+ +|..|+|...+++.+ |++|.||-
T Consensus 1 MqI~Vk~l~G~~~~l~v~~~~tV~~lK~~I~~~~g-i~~~~qrL~~--~Gk~L~d~~tL~~y~i~~~s~I~L~~ 71 (76)
T d1ogwa_ 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG-IPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVL 71 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHC-CCGGGEEEEE--TTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHhhhhhcC-CChHHEEeEE--CCeEcCCCCCHHHcCCCCCCEEEEEE
Confidence 47999999887666654466999999999988644 4556667775 999999988888863 79998874
|
| >d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Ubiquitin-like PHD and RING finger domain-containing protein 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.98 E-value=0.64 Score=41.62 Aligned_cols=70 Identities=16% Similarity=0.159 Sum_probs=55.7
Q ss_pred EEEEEEcCCCCceE-EEccCh-hhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc---cCceeEEeccC
Q 000191 26 LDITVNLPDDTRVI-LKGIST-DRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL---KPCVLSLTEED 98 (1888)
Q Consensus 26 ~~itv~lP~~~~~~-~~~is~-d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l---k~~~L~lVeep 98 (1888)
.+|+|++.+..+.+ +..|+. ++|.++++.+.+... +......|.| +|..|+|...+++. +|++|.||--|
T Consensus 1 M~I~Vk~l~G~~t~~~~~v~~~~TV~~lK~~I~~~~g-ip~~~qrLi~--~Gk~L~d~~tL~~y~I~~~s~i~lv~rp 75 (76)
T d1wy8a1 1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFD-VRPECQRLFY--RGKQLENGYTLFDYDVGLNDIIQLLVRP 75 (76)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSC-CCTTTEEEEE--TTEECCSSSBHHHHTCCTTCEEEEEECC
T ss_pred CEEEEEeCCCCceEEEeccCCCChHHHHHHHHHHHHC-CCchhcEEEE--EeeEecCCCCHHHcCCCCCCEEEEEEcc
Confidence 47999999986544 445755 999999999999764 5778888886 99999998877774 37999998543
|
| >d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: 14-3-3-like protein C species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=82.40 E-value=35 Score=36.27 Aligned_cols=59 Identities=10% Similarity=0.019 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHH
Q 000191 1035 VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL-MEAYPLSVQHEQTTLQILRA 1093 (1888)
Q Consensus 1035 yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~-lGdydeAle~lqkALeI~kk 1093 (1888)
.+.|...|++|+.+....+.+.||....+..|.+..|+. +|+.++|++..++|++-...
T Consensus 147 ~~~a~~aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd~ai~ 206 (236)
T d1o9da_ 147 AESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIA 206 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 457899999999999887889999988888888887775 59999999999998865544
|
| >d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Ubiquitin-like modifier protein hub1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.33 E-value=0.57 Score=41.58 Aligned_cols=68 Identities=24% Similarity=0.345 Sum_probs=53.2
Q ss_pred EEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEe
Q 000191 25 VLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLT 95 (1888)
Q Consensus 25 ~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lV 95 (1888)
+++|+|+...+-......-++|+|.++++.|.+..... -..+.|.+ +|..|+|...+++.. |++|.|.
T Consensus 1 mi~i~vk~~~Gk~~~v~V~~~~tV~~lK~~I~~~~~i~-~~~q~Li~--~Gk~L~d~~tL~~y~I~~gstl~L~ 71 (73)
T d1m94a_ 1 MIEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQ-PNKIVLQK--GGSVLKDHISLEDYEVHDQTNLELY 71 (73)
T ss_dssp CEEEEEEETTTEEEEEEECTTSBHHHHHHHHHHHHCCT-TTSEEEES--SSCEECTTSBHHHHTCCTTEEEEEE
T ss_pred CeEEEEECCCCCEEEEEECCcCcHHHHHHHHHHhhccc-ccEEEEEE--EeEEecccCcHHHcCCCCCCEEEEE
Confidence 47899999987665555557799999999999977654 46778875 999999987777642 7888774
|
| >d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a) species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.22 E-value=0.56 Score=41.97 Aligned_cols=69 Identities=10% Similarity=0.152 Sum_probs=51.9
Q ss_pred EEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCc--ccccccccccccCCCccCCccccccc--c-CceeEEe
Q 000191 25 VLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTET--CSITNFSLSHEIRGPRLKDAVDVAAL--K-PCVLSLT 95 (1888)
Q Consensus 25 ~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~T--c~~T~fsL~~~~~G~~L~d~~ei~~l--k-~~~L~lV 95 (1888)
.++|+|++..+....+..-.+|+|.++++.|...... ++-...-|-+ +|..|+|...+++. + ++++.|+
T Consensus 2 ~~~i~vk~l~g~~~~l~v~~~~TV~~lK~~i~~~~g~~~i~~~~qrLi~--~Gk~L~D~~tL~~y~I~~~s~i~~~ 75 (77)
T d1oqya4 2 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY--AGKILSDDVPIRDYRIDEKNFVVVM 75 (77)
T ss_dssp CCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEES--SSSEECSSSBTTTTCCCTTSCEEEE
T ss_pred cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCChHHEEeEE--CCcCccCCCcHHHcCCCCCCEEEEE
Confidence 4689999999876666555679999999999886543 4455666765 99999998888884 3 5666553
|
| >d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: zeta isoform species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.72 E-value=7.3 Score=41.64 Aligned_cols=60 Identities=10% Similarity=0.118 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHh
Q 000191 1035 VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALS-LMEAYPLSVQHEQTTLQILRAK 1094 (1888)
Q Consensus 1035 yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~-~lGdydeAle~lqkALeI~kk~ 1094 (1888)
.+.|...|++|+++....+.+.||....+..|.+..|+ .+|+.++|++..++|++-....
T Consensus 142 ~~~a~~aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd~ai~~ 202 (230)
T d2o02a1 142 VDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAE 202 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 35799999999999988788989988888888887665 4799999999999998766543
|
| >d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Ubiquitin-like PHD and RING finger domain-containing protein 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.31 E-value=0.98 Score=40.36 Aligned_cols=68 Identities=16% Similarity=0.157 Sum_probs=51.3
Q ss_pred EEEEEEcCCCCceE-EEccCh-hhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc---cCceeEEec
Q 000191 26 LDITVNLPDDTRVI-LKGIST-DRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL---KPCVLSLTE 96 (1888)
Q Consensus 26 ~~itv~lP~~~~~~-~~~is~-d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l---k~~~L~lVe 96 (1888)
.+|+|++.++-+.. +..++. ++|.+|++.+.+...- .....-|. ++|..|+|...+++. +|++|+||-
T Consensus 1 M~I~Vktl~Gk~t~~l~~v~~~~tV~~lK~~I~~~~gi-p~~~qrLi--~~Gk~L~D~~tL~~y~I~~~sti~lv~ 73 (76)
T d2faza1 1 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHV-EPGLQRLF--YRGKQMEDGHTLFDYEVRLNDTIQLLV 73 (76)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCC-CGGGEEEE--ETTEECCTTCBTTTTTCCTTCEEEEEE
T ss_pred CEEEEEeCCCCcEEEEecCCCCCCHHHHHHHHHHHHCc-ChHHeEEE--EeeEeccCCCcHHHcCCCCCCEEEEEE
Confidence 47999999986544 445655 8899999999997765 33444565 499999998888885 379999873
|
| >d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Ubiquitin-like domain of parkin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.17 E-value=1.1 Score=40.04 Aligned_cols=69 Identities=9% Similarity=0.177 Sum_probs=52.5
Q ss_pred EEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc--c-CceeEEecc
Q 000191 26 LDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL--K-PCVLSLTEE 97 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l--k-~~~L~lVee 97 (1888)
.+|.|+++......+..-++|+|.+|++.|.+..... -....|.| +|..|+|-..+++. + +++|+||--
T Consensus 3 M~I~Vk~~~g~t~~l~v~~~~tV~~lK~~i~~~~gip-~~~qrLi~--~Gk~L~d~~tL~~y~I~~~sti~lv~R 74 (78)
T d2zeqa1 3 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVP-ADQLRVIF--AGKELPNHLTVQNCDLEQQSIVHIVQR 74 (78)
T ss_dssp EEEEEESSSSSCEEEEECTTCBHHHHHHHHHHHHTCC-GGGEEEEE--TTEEECTTCBGGGSSCCTTCEEEEEES
T ss_pred eEEEEEcCCCCEEEEEEcccccHHHHHHHHHHHHCcC-hhHeEEEE--eeeEcCCCCCHHHcCCCCCCEEEEEec
Confidence 5799999985555555446699999999999876543 44556775 99999998888874 3 699998753
|
| >d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: 14-3-3 domain containing protein cgd7 2470 species: Cryptosporidium parvum [TaxId: 5807]
Probab=80.47 E-value=39 Score=35.54 Aligned_cols=187 Identities=9% Similarity=-0.023 Sum_probs=105.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000191 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH-TGDFNQATIYQQKALDINERELGLDHP 974 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~-lGdyeeAl~~~eKAL~I~Er~lG~Dhp 974 (1888)
+..+|+.+-+.|+|++...+..+++.+....-.... ..=.+.|+.+|-. .|..-.|..... .+-++.. .+.
T Consensus 7 ~~y~Akl~eqa~ryddm~~~mK~~v~~~~~~n~eLt---~eERnLLsvayKn~i~~~R~s~R~i~---~ie~k~~--~~~ 78 (220)
T d2o8pa1 7 QKYRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFD---DEERHLLTLCIKHKISDYRTMTSQVL---QEQTKQL--NND 78 (220)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHSC--SCH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHhhhcccCccCC---HHHHHHHHHHHHHHHhhhHHHHHHHH---HHHHhhc--cch
Confidence 345688899999999999999999887432111111 1223344444321 122222222221 1111111 111
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHH
Q 000191 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT-AATYINVAMMEE-----GLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~-a~a~~NLA~iy~-----~lG~yeeAle~LekALei 1048 (1888)
... .+..-|.. .=-.+=...+...+.+....+-+ ++.. +..+-..|..|. ..|..++|...|++|+.+
T Consensus 79 ~~~----~~~~~y~~-~i~~el~~~c~~i~~lid~~L~~-~~eskVFY~KmKGDYyRYlaE~~~~~~~~a~~aY~~A~~i 152 (220)
T d2o8pa1 79 ELV----KICSEYVF-SLRKDIKAFLQSFEDCVDRLVEK-SFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTL 152 (220)
T ss_dssp HHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHTCCCC-SHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred hHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 111 11111111 11133344556666666555433 3332 222222333332 568889999999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHHhcC
Q 000191 1049 NQRLLGPDHIQTAASYHAIAIALSL-MEAYPLSVQHEQTTLQILRAKLG 1096 (1888)
Q Consensus 1049 ~ek~~G~d~~~tA~al~nLA~ay~~-lGdydeAle~lqkALeI~kk~LG 1096 (1888)
....+.+.||.......|.+..|+. +++.++|.+..++|.+.|...+.
T Consensus 153 a~~~l~pt~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A~~~fdeai~ 201 (220)
T d2o8pa1 153 LCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILELQIK 201 (220)
T ss_dssp HHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 8887788888888888888876654 79999999999999766655443
|