Citrus Sinensis ID: 000224

Local Sequence Feature Prediction

Prediction and Method	Result

Residue Number Marker

Protein Sequence

Secondary Structure (Consensus)

Disordered Region (Consensus)

Transmembrane Helix (Consensus)

Signal Peptide (Consensus)

Coiled Coil (COILS)

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------1590------1600------1610------1620------1630------1640------1650------1660------1670------1680------1690------1700------1710------1720------1730------1740------1750------1760------1770------1780------1790------1800------1810------1820------1830---

MGTAKRHLKAMLRKNWLLKVRHPFVTAAEILLPTVVMLLLIAVRTRVDTRIHPAQPYIRKDMFVEIGKGVSPNFVQALELMLAKGEYLAFAPDTEETRTMINLMSIKFPKLKLVSRIYKDELELETYIRSDLYGTCSQVKDCLNPKIKGAVVFHDQGPELFDYSIRLNHTWAFSGFPDVKTIMDTNGPYLNDLELGVNIIPTMQYSFSGFLTLQQVLDSFIIFAAQQTGANVATENVEIPPSNLSGTHLSLKQPWTLYSPSNIRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLYMMGLKDGIFHLSWFITYAAQFAVSSGIITACTMDSLFKYSDKTVVFTYFFSFGLSAITLSFFISTFFARAKTAVAVGTLSFLGAFFPYYTVNDEAVPMVLKVIASLLSPTAFALGSVNFADYERAHVGLRWSNMWRASSGVNFLVCLLMMLLDTLLYGVIGLYLDKVLPKENGVRYRWNFIFQNCFRRKKSVIKHHVSSAEVKINKKLSKEKECAFALDACEPVVEAISLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKSAPDASAAADIVYRHIPSALCVSEVGTEITFKLPLASSSSFESMFREIESCIRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFLRVAGCNLDESECISQRNNLVTLDYVSAESDDQAPKRISNCKLFGNYKWVFGFIVTVVQRACTLIVAAVLGFLNFLIKKCCTCCIISRSMFWQHCKALFIKRAVSARRDRKTIVFQLLIPAIFLLVGLLFLKLKPHPDMLSVTFTTSNFNPLLSGGGGGGPIPFDLSWPIANEVSKYIQGGWIQRFKQSSYRFPNAEKALADAVDAAGPTLGPVLLSMSEYLMSSFNESYQSRYGAIVMDDQNDDGSLGFTVLHNSSCQHAGPTFINVMNTAILRLATGNRNMTIRTRNHPLPTTQSQQLQRHDLDAFSVSIIISIAFSFIPASFAVAIVKEREVKAKQQQLISGVSVLSYWTSTYIWDFISFLFPSSCAIILFYIFGLDQFVGRGCLLPTVLIFLGYGLAIASSTYCLTFFFSDHTMAQNVVLLVHFFTGLILMVISFIMGLLEATRSANSLLKNFFRLSPGFCFADGLASLALLRQGMKDKTSDGVFDWNVTSASICYLGCESICYFLLTLGLELLPSHKWTLMTIKEWWKGTRHRLCNTPSSYLEPLLQSSSESDTLDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSENATAAEISLSQEMLLIVGRWLGNEERIKTLISSSSSPDRIFGEQLSEQLVRDGTDGSCTLRFVSSFIFIFSGLILSVIQKSNW

cHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHccccccccccccccccccCEEEEEEcccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEECcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHccccHHHHHHHcccccccccccccccccccccccccEEEEEEEEEEEcccccEEEEEccccEEccccEEEEEccccccHHHHHHHHccccccccCEEEEEcccccccHHHHHcccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHccccccccccHHHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHHcccEEEEccccHHHHHHHcccEEEEEccCEEECccHHHHHHcccccEEEEEEcccccHHHHHHHHHHHccccEEEECcccEEEEEccccccccHHHHHHHHHHcccccccccccccccccccccccCEEcccccHHHHHHHcccccccccHHHHHcccccccccccccccccccccccccccccccccccccEEcccccccHHHHHHHcccHHHccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccEEEEEEEcccccccCEEEEEEcccccccHHHHHHHHHHHHHHHHcccccCEEEEEECccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccEEEEcEEEEEccccccccccccccEEEEEccccEEEEcccccccHHHHHHHHHcccccccEEEEECcccccccHHHHccccccccccccccccccHHHHHHHHHHcccccHHcHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHcccccEEEEccccccccHHHHHHHHHHHHHHHcccccEEEEEEcccHHHHHHHccccEEEEccEEEEcccHHHHHHcccccEEEEEEEcccccccHHHHHHHHHHHcccccccccccHHHHHHHHcccccccccCEEEEccHHHHHHHHHHccccccHHHHHHcccccccccccccccHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHccc

*GTAKRHLKAMLRKNWLLKVRHPFVTAAEILLPTVVMLLLIAVRTRVDTRIHPAQPYIRKDMFVEIGKGVSPNFVQALELMLAKGEYLAFAPDTEETRTMINLMSIKFPKLKLVSRIYKDELELETYIRSDLYGTCSQVKDCLNPKIKGAVVFHDQGPELFDYSIRLNHTWAFSGFPDVKTIMDTNGPYLNDLELGVNIIPTMQYSFSGFLTLQQVLDSFIIFAAQQTGANVATENVEIPPSNLSGTHLSLKQPWTLYSPSNIRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLYMMGLKDGIFHLSWFITYAAQFAVSSGIITACTMDSLFKYSDKTVVFTYFFSFGLSAITLSFFISTFFARAKTAVAVGTLSFLGAFFPYYTVNDEAVPMVLKVIASLLSPTAFALGSVNFADYERAHVGLRWSNMWRASSGVNFLVCLLMMLLDTLLYGVIGLYLDKVLPKENGVRYRWNFIFQNCFRRKKS*********************************************VDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKSAPDASAAADIVYRHIPSALCVSEVGTEITFKLPLASSSSFESMFREIESCIRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFLRVAGC************************************LFGNYKWV***********************NFLIKKCCTCCIISRSMFWQHCKALFIKRAVSARRDRKTIVFQLLIPAIFLLVGLLFLKLKPHPDMLSVTFTTSNFNPLLSGGGGGGPIPFDLSWPIANEVSKYIQGGWIQRFKQSSYRFPNAEKALADAVDAAGPTLGPVLLSMSEYLMSSFNESYQSRYGAIVMDDQNDDGSLGFTVLHNSSCQHAGPTFINVMNTAILRLATGNRNMTIRTRNHPLPTTQSQQLQRHDLDAFSVSIIISIAFSFIPASFAVAIVKEREVKAKQQQLISGVSVLSYWTSTYIWDFISFLFPSSCAIILFYIFGLDQFVGRGCLLPTVLIFLGYGLAIASSTYCLTFFFSDHTMAQNVVLLVHFFTGLILMVISFIMGLLEATRSANSLLKNFFRLSPGFCFADGLASLALLRQGMKDKTSDGVFDWNVTSASICYLGCESICYFLLTLGLELLPSHKWTLMTIKEWWKGTRHRLCNTPSSYL*****************DIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSENATAAEISLSQEMLLIVGRWL**************************QLVRDGTDGSCTLRFVSSFIFIFSGLILSVIQKSN*

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Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries

Annotation	Function Description	Confidence Level	Reference Protein
ABC transporter A family member 1		confident	Q84M24
ATP-binding cassette sub-family A member 3	Plays an important role in the formation of pulmonary surfactant, probably by transporting lipids such as cholesterol.	probable	Q8R420
ATP-binding cassette sub-family A member 3	Plays an important role in the formation of pulmonary surfactant, probably by transporting lipids such as cholesterol.	probable	Q99758

Prediction of Enzyme Commission Number

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1VPL, chain A
Confidence level:very confident
Coverage over the Query: 1463-1700
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View the model in PyMOL

Template: 3GD7, chain A
Confidence level:confident
Coverage over the Query: 596-869
View the alignment between query and template
View the model in PyMOL

Template: 3TUI, chain C
Confidence level:confident
Coverage over the Query: 560-825
View the alignment between query and template
View the model in PyMOL

Template: 3OZX, chain A
Confidence level:confident
Coverage over the Query: 514-561,572-630,642-766
View the alignment between query and template
View the model in PyMOL

Template: 3GD7, chain A
Confidence level:confident
Coverage over the Query: 596-869
View the alignment between query and template
View the model in PyMOL

Template: 2IW3, chain A
Confidence level:probable
Coverage over the Query: 1409-1682
View the alignment between query and template
View the model in PyMOL