Citrus Sinensis ID: 000224
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1833 | 2.2.26 [Sep-21-2011] | |||||||
| Q84M24 | 1882 | ABC transporter A family | yes | no | 0.969 | 0.944 | 0.730 | 0.0 | |
| Q99758 | 1704 | ATP-binding cassette sub- | yes | no | 0.831 | 0.894 | 0.323 | 0.0 | |
| Q8R420 | 1704 | ATP-binding cassette sub- | yes | no | 0.832 | 0.895 | 0.320 | 0.0 | |
| Q54BT5 | 1702 | ABC transporter A family | yes | no | 0.806 | 0.868 | 0.282 | 1e-153 | |
| P34358 | 1704 | ABC transporter ced-7 OS= | no | no | 0.843 | 0.907 | 0.264 | 1e-125 | |
| O95477 | 2261 | ATP-binding cassette sub- | no | no | 0.411 | 0.333 | 0.331 | 1e-121 | |
| P41233 | 2261 | ATP-binding cassette sub- | no | no | 0.418 | 0.339 | 0.325 | 1e-120 | |
| Q9BZC7 | 2435 | ATP-binding cassette sub- | no | no | 0.392 | 0.295 | 0.326 | 1e-115 | |
| Q9ESR9 | 2434 | ATP-binding cassette sub- | no | no | 0.328 | 0.247 | 0.364 | 1e-115 | |
| P78363 | 2273 | Retinal-specific ATP-bind | no | no | 0.379 | 0.305 | 0.327 | 1e-106 |
| >sp|Q84M24|AB1A_ARATH ABC transporter A family member 1 OS=Arabidopsis thaliana GN=ABCA1 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 2688 bits (6968), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1328/1817 (73%), Positives = 1546/1817 (85%), Gaps = 40/1817 (2%)
Query: 1 MGTAKRHLKAMLRKNWLLKVRHPFVTAAEILLPTVVMLLLIAVRTRVDTRIHPAQPYIRK 60
MG++KR KAMLRKNWLLK RHPFVT+AEILLPT+VMLLLIAVRTRVDT IHPA I K
Sbjct: 1 MGSSKRQFKAMLRKNWLLKTRHPFVTSAEILLPTIVMLLLIAVRTRVDTTIHPAHSNIDK 60
Query: 61 DMFVEIGKGVSPNFVQALELMLAKGEYLAFAPDTEETRTMINLMSIKFPKLKLVSRIYKD 120
D VE+GKG SP+F + L+L+LA+G++LAFAPDT+ET MI+++S+KFP+L+LV++I+KD
Sbjct: 61 DTVVEVGKGNSPSFPEVLKLLLAEGDFLAFAPDTDETNNMIDILSLKFPELRLVTKIFKD 120
Query: 121 ELELETYIRSDLYGTCSQVKDCLNPKIKGAVVFHDQGPELFDYSIRLNHTWAFSGFPDVK 180
++ELETYI S YG CS+V++C NPKIKGAVVFH+QGP LFDYSIRLNHTWAF+GFP+VK
Sbjct: 121 DIELETYITSAHYGVCSEVRNCSNPKIKGAVVFHEQGPHLFDYSIRLNHTWAFAGFPNVK 180
Query: 181 TIMDTNGPYLNDLELGVNIIPTMQYSFSGFLTLQQVLDSFIIFAAQQTGANVATENVEIP 240
+IMDTNGPY+NDLE+G+N IPTMQYSFSGFLTLQQV+DSFIIFA+QQ ++ +
Sbjct: 181 SIMDTNGPYINDLEMGINTIPTMQYSFSGFLTLQQVVDSFIIFASQQN------NDLPLS 234
Query: 241 PSNLSGTHLSLKQPWTLYSPSNIRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISR 300
SNLS + L + PWTL+SPS IRMVPFPTREYTDDEFQSI+K VMG+LYLLGFL+PISR
Sbjct: 235 HSNLS-SALRFELPWTLFSPSVIRMVPFPTREYTDDEFQSIVKSVMGLLYLLGFLFPISR 293
Query: 301 LISYSVFEKEQKIREGLYMMGLKDGIFHLSWFITYAAQFAVSSGIITACTMDSLFKYSDK 360
LISYSVFEKEQKIREGLYMMGLKD IFHLSWFITYA QFA+ SGIITACTM SLFKYSDK
Sbjct: 294 LISYSVFEKEQKIREGLYMMGLKDEIFHLSWFITYALQFALCSGIITACTMGSLFKYSDK 353
Query: 361 TVVFTYFFSFGLSAITLSFFISTFFARAKTAVAVGTLSFLGAFFPYYTVNDEAVPMVLKV 420
T+VFTYFF FGLSAI LSF ISTFF RAKTAVAVGTL+FLGAFFPYYTVNDE+V MVLKV
Sbjct: 354 TLVFTYFFLFGLSAIMLSFMISTFFTRAKTAVAVGTLTFLGAFFPYYTVNDESVSMVLKV 413
Query: 421 IASLLSPTAFALGSVNFADYERAHVGLRWSNMWRASSGVNFLVCLLMMLLDTLLYGVIGL 480
+ASLLSPTAFALGS+NFADYERAHVGLRWSN+WRASSGV+F VCLLMMLLD++LY +GL
Sbjct: 414 VASLLSPTAFALGSINFADYERAHVGLRWSNIWRASSGVSFFVCLLMMLLDSILYCALGL 473
Query: 481 YLDKVLPKENGVRYRWNFIFQNCFRRKKSVIKHHVSS-------AEVKINKKLSKEKECA 533
YLDKVLP+ENGVRY WNFIF F RKK+ +++ + A++++N+
Sbjct: 474 YLDKVLPRENGVRYPWNFIFSKYFGRKKNNLQNRIPGFETDMFPADIEVNQG-------- 525
Query: 534 FALDACEPVVEAISLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILA 593
+ +PV E+ISL+M+QQE+DGRCIQ+R LHKVYA++RGNCCAVNSLQLTLYENQIL+
Sbjct: 526 ---EPFDPVFESISLEMRQQELDGRCIQVRNLHKVYASRRGNCCAVNSLQLTLYENQILS 582
Query: 594 LLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTV 653
LLGHNGAGKSTTISMLVGL+PPT+GDAL+ G +I +MDEIRK LGVCPQ+DILFPELTV
Sbjct: 583 LLGHNGAGKSTTISMLVGLLPPTSGDALILGNSIITNMDEIRKELGVCPQHDILFPELTV 642
Query: 654 REHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDS 713
REHLEMFAVLKGV+E L+S V +M +EVGL+DK+N +VRALSGGMKRKLSLGIALIG+S
Sbjct: 643 REHLEMFAVLKGVEEGSLKSTVVDMAEEVGLSDKINTLVRALSGGMKRKLSLGIALIGNS 702
Query: 714 KVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKC 773
KV+ILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRI IMANGSLKC
Sbjct: 703 KVIILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIGIMANGSLKC 762
Query: 774 CGSSLFLKHQYGVGYTLTLVKSAPDASAAADIVYRHIPSALCVSEVGTEITFKLPLASSS 833
CGSS+FLKH YGVGYTLTLVK++P S AA IV+RHIPSA CVSEVG EI+FKLPLAS
Sbjct: 763 CGSSIFLKHHYGVGYTLTLVKTSPTVSVAAHIVHRHIPSATCVSEVGNEISFKLPLASLP 822
Query: 834 SFESMFREIESCIRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFLRVAGCNLDESEC 893
FE+MFREIESC++ SV + + ED+DY GI+S+GISVTTLEEVFLRVAGCNLD +
Sbjct: 823 CFENMFREIESCMKNSVDRSKISEIEDSDYPGIQSYGISVTTLEEVFLRVAGCNLDIED- 881
Query: 894 ISQRNNLVTLDYVSA-------ESDDQAPKRISNCKLFGNYKWVFGFIVTVVQRACTLIV 946
Q + V+ D S+ + PK +++C G I+T V +A LIV
Sbjct: 882 -KQEDIFVSPDTKSSLVCIGSNQKSSMQPKLLASCNDGA------GVIITSVAKAFRLIV 934
Query: 947 AAVLGFLNFLIKKCCTCCIISRSMFWQHCKALFIKRAVSARRDRKTIVFQLLIPAIFLLV 1006
AAV + F+ +CC C IISRSMFW+HCKALFIKRA SA RDRKT+ FQ +IPA+FLL
Sbjct: 935 AAVWTLIGFISIQCCGCSIISRSMFWRHCKALFIKRARSACRDRKTVAFQFIIPAVFLLF 994
Query: 1007 GLLFLKLKPHPDMLSVTFTTSNFNPLLSGGGGGGPIPFDLSWPIANEVSKYIQGGWIQRF 1066
GLLFL+LKPHPD S+T TT+ FNPLLSG GGGGPIPFDLS PIA EV++YI+GGWIQ
Sbjct: 995 GLLFLQLKPHPDQKSITLTTAYFNPLLSGKGGGGPIPFDLSVPIAKEVAQYIEGGWIQPL 1054
Query: 1067 KQSSYRFPNAEKALADAVDAAGPTLGPVLLSMSEYLMSSFNESYQSRYGAIVMDDQNDDG 1126
+ +SY+FPN ++ALADA+DAAGPTLGP LLSMSE+LMSSF++SYQSRYG+I+MD Q+ DG
Sbjct: 1055 RNTSYKFPNPKEALADAIDAAGPTLGPTLLSMSEFLMSSFDQSYQSRYGSILMDGQHPDG 1114
Query: 1127 SLGFTVLHNSSCQHAGPTFINVMNTAILRLATGNRNMTIRTRNHPLPTTQSQQLQRHDLD 1186
SLG+TVLHN +CQHAGP +INVM+ AILRLATGN+NMTI+TRNHPLP T++Q++QRHDLD
Sbjct: 1115 SLGYTVLHNGTCQHAGPIYINVMHAAILRLATGNKNMTIQTRNHPLPPTKTQRIQRHDLD 1174
Query: 1187 AFSVSIIISIAFSFIPASFAVAIVKEREVKAKQQQLISGVSVLSYWTSTYIWDFISFLFP 1246
AFS +II++IAFSFIPASFAV IVKEREVKAK QQLISGVSVLSYW STY+WDFISFLFP
Sbjct: 1175 AFSAAIIVNIAFSFIPASFAVPIVKEREVKAKHQQLISGVSVLSYWLSTYVWDFISFLFP 1234
Query: 1247 SSCAIILFYIFGLDQFVGRGCLLPTVLIFLGYGLAIASSTYCLTFFFSDHTMAQNVVLLV 1306
S+ AIILFY FGL+QF+G G LPTVL+ L YGLAIASSTYCLTFFF++H+MAQNV+L+V
Sbjct: 1235 STFAIILFYAFGLEQFIGIGRFLPTVLMLLEYGLAIASSTYCLTFFFTEHSMAQNVILMV 1294
Query: 1307 HFFTGLILMVISFIMGLLEATRSANSLLKNFFRLSPGFCFADGLASLALLRQGMKDKTSD 1366
HFF+GLILMVISF+MGL+ AT SANS LKNFFRLSPGFCF+DGLASLALLRQGMKDK+S
Sbjct: 1295 HFFSGLILMVISFVMGLIPATASANSYLKNFFRLSPGFCFSDGLASLALLRQGMKDKSSH 1354
Query: 1367 GVFDWNVTSASICYLGCESICYFLLTLGLELLPSHKWTLMTIKEWWKGTRHRLCNTPSSY 1426
GVF+WNVT ASICYLG ESI YFL+TLGLEL+P K +I EWW+ + SS
Sbjct: 1355 GVFEWNVTGASICYLGLESIFYFLVTLGLELMPVQKVMSFSIGEWWQNLKAFKQGAGSSS 1414
Query: 1427 LEPLLQSSSESDTLDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAV 1486
EPLL+ S+ + + D+ +DIDVQ ER+RV+SG DN ++YL+NLRKVYPG K KVAV
Sbjct: 1415 TEPLLKDSTGAISTDMEDDIDVQEERDRVISGLSDNTMLYLQNLRKVYPGDKHHGPKVAV 1474
Query: 1487 HSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIG 1546
SLTFSVQAGECFGFLGTNGAGKTTTLSM+SGEE PT GTAFIFGKDI + PKA R+ IG
Sbjct: 1475 QSLTFSVQAGECFGFLGTNGAGKTTTLSMLSGEETPTSGTAFIFGKDIVASPKAIRQHIG 1534
Query: 1547 YCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGN 1606
YCPQFDAL EYLTV+EHLELYARIKGV ++R+D+VV EKLVEFDLLKH+ KPSFTLSGGN
Sbjct: 1535 YCPQFDALFEYLTVKEHLELYARIKGVVDHRIDNVVTEKLVEFDLLKHSHKPSFTLSGGN 1594
Query: 1607 KRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEA 1666
KRKLSVAIAMIGDPPIVILDEPSTGMDP+AKRFMW+VISRLSTR GKTAVILTTHSMNEA
Sbjct: 1595 KRKLSVAIAMIGDPPIVILDEPSTGMDPVAKRFMWDVISRLSTRSGKTAVILTTHSMNEA 1654
Query: 1667 QALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQERVFDI 1726
QALCTRIGIMVGG+LRCIGSPQHLKTR+GN LELEVKP EVS+V+LE+ CQIIQ+ +F++
Sbjct: 1655 QALCTRIGIMVGGRLRCIGSPQHLKTRYGNHLELEVKPNEVSNVELENFCQIIQQWLFNV 1714
Query: 1727 PSQRRSLLDDLEVCIGGIDSISSENATAAEISLSQEMLLIVGRWLGNEERIKTLISSSSS 1786
P+Q RSLL DLEVCIG DSI+ + A+A+EISLS EM+ + ++LGNE+R+ TL+
Sbjct: 1715 PTQPRSLLGDLEVCIGVSDSITPDTASASEISLSPEMVQRIAKFLGNEQRVSTLVPPLPE 1774
Query: 1787 PDRIFGEQLSEQLVRDG 1803
D F +QLSEQL RDG
Sbjct: 1775 EDVRFDDQLSEQLFRDG 1791
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q99758|ABCA3_HUMAN ATP-binding cassette sub-family A member 3 OS=Homo sapiens GN=ABCA3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 577/1783 (32%), Positives = 850/1783 (47%), Gaps = 258/1783 (14%)
Query: 6 RHLKAMLRKNWLLKVRHPFVTAAEILLPTVVMLLLIAVRTRVDTR------IHPAQPYIR 59
R L +L KN+ L+ R VT E+ LP + +LI +R ++ + I+P Q
Sbjct: 5 RQLALLLWKNYTLQKRKVLVTVLELFLPLLFSGILIWLRLKIQSENVPNATIYPGQSIQE 64
Query: 60 KDMFVEIGKGVSPNFVQALELMLAKGEYLAFAPDTEETRTMINLMSIKFPKLKLVSRIYK 119
+F P L + + + +T +IN+ FP
Sbjct: 65 LPLFFTFP---PPGDTWELAYIPSHSDAAKTVTETVRRALVINMRVRGFP---------- 111
Query: 120 DELELETYIRSDLYGTCSQVKDCLNPKIKGAVVF-----HDQGPE--------LFDYSIR 166
E + E YIR Y CS + AVVF H + P F Y+ R
Sbjct: 112 SEKDFEDYIR---YDNCSS-------SVLAAVVFEHPFNHSKEPLPLAVKYHLRFSYT-R 160
Query: 167 LNHTWAFSGFPDVKTIMDTNGPYLNDL-ELGVNIIPTMQ---------YSFSGFLTLQQV 216
N+ W +G +K +T G + L L N P Y GFL +Q
Sbjct: 161 RNYMWTQTGSFFLK---ETEGWHTTSLFPLFPNPGPREPTSPDGGEPGYIREGFLAVQHA 217
Query: 217 LDSFIIFAAQQTGANVATENVEIPPSNLSGTHLSLKQPWTLYSPSNIRMVPFPTREYTDD 276
+D I+ + A+ AT L+ + + FP + D
Sbjct: 218 VDRAIM----EYHADAATRQ--------------------LFQRLTVTIKRFPYPPFIAD 253
Query: 277 EFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLYMMGLKDGIFHLSWFITYA 336
F I+ + +L LL F Y + V EKE++++E + MMGL + +WF+ +
Sbjct: 254 PFLVAIQYQLPLLLLLSFTYTALTIARAVVQEKERRLKEYMRMMGLSSWLHWSAWFLLFF 313
Query: 337 AQFAVSSGIITA--CTMD----SLFKYSDKTVVFTYFFSFGLSAITLSFFISTFFARAKT 390
+++ +T C ++ SD ++V + F +S I+ SF +STFF++A
Sbjct: 314 LFLLIAASFMTLLFCVKVKPNVAVLSRSDPSLVLAFLLCFAISTISFSFMVSTFFSKANM 373
Query: 391 AVAVGTLSFLGAFFPYYTVNDEAVPMVL--KVIASLLSPTAFALGSVNFADYERAHVGLR 448
A A G + + PY+ V M L K+ + LLS A A+G+ +E +G++
Sbjct: 374 AAAFGGFLYFFTYIPYFFVAPRYNWMTLSQKLCSCLLSNVAMAMGAQLIGKFEAKGMGIQ 433
Query: 449 WSNMWRASSGVN------FLVCLLMMLLDTLLYGVIGLYLDKVLPKENGVRYRWNFIFQN 502
W ++ S VN F L M+LLD++LYG++ Y++ V P + GV W F
Sbjct: 434 WRDLL---SPVNVDDDFCFGQVLGMLLLDSVLYGLVTWYMEAVFPGQFGVPQPWYFFIMP 490
Query: 503 CFRRKKSVIKHHVSSAEVKINKKLSKEKECAFALDACEPVVEAISLDMKQQEVDGRCIQI 562
+ K + K L E EA D+ V G I+I
Sbjct: 491 SYWCGKPRAVAGKEEEDSDPEKALRNE------------YFEAEPEDL----VAG--IKI 532
Query: 563 RKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALV 622
+ L KV+ + AV L L LYE QI LLGHNGAGK+TT+SML GL PPT+G A +
Sbjct: 533 KHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYI 592
Query: 623 FGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEV 682
G I+ DM +IRK LG+CPQ+DILF LTV EHL +A LKG+ + V +M+ +
Sbjct: 593 SGYEISQDMVQIRKSLGLCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHII 652
Query: 683 GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK 742
GL DK N R LSGGM+RKLS+GIALI SKV+ILDEPTSGMD S R W L+++ K
Sbjct: 653 GLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQRQKS 712
Query: 743 GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKSAP-DASA 801
R I+LTTH MDEA+ LGDRIAIMA G L+CCGSSLFLK +YG GY +TLVK +
Sbjct: 713 DRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGSSLFLKQKYGAGYHMTLVKEPHCNPED 772
Query: 802 AADIVYRHIPSALCVSEVGTEITFKLPLASSSSFESMFREIESCIRKSVSKVEADATEDT 861
+ +V+ H+P+A S G E++F LP S+ FE +F ++E ++
Sbjct: 773 ISQLVHHHVPNATLESSAGAELSFILPRESTHRFEGLFAKLEKKQKE------------- 819
Query: 862 DYLGIESFGISVTTLEEVFLRVAGCNLDESECISQRNNLVTLDYVSAESDDQAPKRISNC 921
LGI SFG S+TT+EEVFLRV L +S Q L L Y + + +A +
Sbjct: 820 --LGIASFGASITTMEEVFLRVG--KLVDSSMDIQAIQLPALQY---QHERRASDWAVDS 872
Query: 922 KLFGNYKWVFGFIVTVVQRACTLIVAAVLGFLNFLIKKCCTCCIISRSMFWQHCKALFIK 981
L G G I +++ T + K T + FW A+F+K
Sbjct: 873 NLCGAMDPSDG-IGALIEEERTAV-------------KLNTGLALHCQQFW----AMFLK 914
Query: 982 RAVSARRDRKTIVFQLLIPAIFLLVGLLFLKLKPHPDMLSVTFTTSNF-NPLLS---GGG 1037
+A + R+ K + Q+L+P + + L L++ +++ F +P+L G
Sbjct: 915 KAAYSWREWKMVAAQVLVPLTCVTLAL-----------LAINYSSELFDDPMLRLTLGEY 963
Query: 1038 GGGPIPFDLSWPIANEVSKYIQGGWIQRFKQSSYRFPNAEKALADAVDAAGPTLGPVLLS 1097
G +PF + P +++ + + + L DA+ A G VL
Sbjct: 964 GRTVVPFSV--PGTSQLGQQLS------------------EHLKDALQAEGQEPREVLGD 1003
Query: 1098 MSEYLM-------SSFNESYQSRYGAIVMDDQNDDGSLG-FTVLHNSSCQHAGPTFINVM 1149
+ E+L+ FNE +V D G L N+ H+ T + V+
Sbjct: 1004 LEEFLIFRASVEGGGFNER------CLVAASFRDVGERTVVNALFNNQAYHSPATALAVV 1057
Query: 1150 NTAILRLATGNRNMTIRTRNHPLPTTQSQQLQ---RHDLDAFSVSIIISIAFSFIPASFA 1206
+ + +L G + +I N P P + Q + F +++ + A +F+ ++F+
Sbjct: 1058 DNLLFKLLCGP-HASIVVSNFPQPRSALQAAKDQFNEGRKGFDIALNLLFAMAFLASTFS 1116
Query: 1207 VAIVKEREVKAKQQQLISGVSVLSYWTSTYIWDFISFLFPSSCAIILFYIFGLDQFVGRG 1266
+ V ER V+AK Q +SGV V S+W S +WD ISFL PS +++F F + F G
Sbjct: 1117 ILAVSERAVQAKHVQFVSGVHVASFWLSALLWDLISFLIPSLLLLVVFKAFDVRAFTRDG 1176
Query: 1267 CLLPTVLIFLGYGLAIASSTYCLTFFFSDHTMAQNVVLLVHFFTGLILMVISFIMGLLEA 1326
+ T+L+ L YG AI Y + FFF A + + + +G+ ++ IM +
Sbjct: 1177 HMADTLLLLLLYGWAIIPLMYLMNFFFLGAATAYTRLTIFNILSGIATFLMVTIMRIPAV 1236
Query: 1327 T-RSANSLLKNFFRLSPGFCFADGLASLALLRQGMKDKTSDGV----------------F 1369
+ L + F + P C ++S + + TS V +
Sbjct: 1237 KLEELSKTLDHVFLVLPNHCLGMAVSSFYENYETRRYCTSSEVAAHYCKKYNIQYQENFY 1296
Query: 1370 DWNVTS-----ASICYLGCES-ICYFLLTLGLELLPSHKWTLMTIKEWWKGTRHRLCNTP 1423
W+ AS+ GC I FL+ L L ++ R R T
Sbjct: 1297 AWSAPGVGRFVASMAASGCAYLILLFLIETNL---------LQRLRGILCALRRRRTLTE 1347
Query: 1424 SSYLEPLLQSSSESDTLDLNEDIDVQVERNRVLSGSVDNAI---IYLRNLRKVYPGGKRS 1480
P+L ED DV ER R+L+ S D+ + + ++ L KVY ++
Sbjct: 1348 LYTRMPVLP-----------EDQDVADERTRILAPSPDSLLHTPLIIKELSKVY---EQR 1393
Query: 1481 DAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKA 1540
+AV L+ +VQ GECFG LG NGAGKTTT M++GEE T G AF+ G I SD
Sbjct: 1394 VPLLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGK 1453
Query: 1541 ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSF 1600
R+ IGYCPQFDALL+++T +E L +YAR++G+ E + V L L HA K
Sbjct: 1454 VRQRIGYCPQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVR 1513
Query: 1601 TLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTT 1660
T SGGNKRKLS IA+IG+P ++ LDEPSTGMDP+A+R +W+ ++R R+ A+I+T+
Sbjct: 1514 TYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVAR--ARESGKAIIITS 1571
Query: 1661 HSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVK 1703
HSM E +ALCTR+ IMV GQ +C+GSPQHLK++FG+ L K
Sbjct: 1572 HSMEECEALCTRLAIMVQGQFKCLGSPQHLKSKFGSGYSLRAK 1614
|
Plays an important role in the formation of pulmonary surfactant, probably by transporting lipids such as cholesterol. Homo sapiens (taxid: 9606) |
| >sp|Q8R420|ABCA3_MOUSE ATP-binding cassette sub-family A member 3 OS=Mus musculus GN=Abca3 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/1782 (32%), Positives = 873/1782 (48%), Gaps = 256/1782 (14%)
Query: 6 RHLKAMLRKNWLLKVRHPFVTAAEILLPTVVMLLLIAVRTRVDTRIHPAQPYIRKDMFVE 65
R L +L KN+ LK R VT E+ LP + +LI +R ++ + P
Sbjct: 5 RQLTLLLWKNYTLKKRKVLVTVLELFLPLLFSGILIWLRLKIQSENVP------------ 52
Query: 66 IGKGVSPN-FVQALELMLA----KGEY-LAFAPD-TEETRTMINLMSIKFPKLKLVSRIY 118
V P+ +Q L L + G + LA+ P ++ RT+ + +F +K+ +
Sbjct: 53 -NATVYPDQSIQELPLFFSFPPPGGTWELAYVPSHSDAARTITETVKREF-MIKMRVHGF 110
Query: 119 KDELELETYIRSDLYGTCSQVKDCLNPKIKGAVVF-----HDQGPE--------LFDYSI 165
E + E YIR D + + + AVVF H Q P F Y+
Sbjct: 111 SSEKDFEDYIRYDNHSS----------SVLAAVVFEHSFNHSQDPLPLAVKYHLRFSYT- 159
Query: 166 RLNHTWAFSGFPDVKTIMDTNGPYLNDLELGVNIIPTMQ-------------YSFSGFLT 212
R N+ W +G +K +T G + L + P+ Y GFL
Sbjct: 160 RRNYMWTQTGNIFLK---ETEGWHTTSL---FPLFPSPGPREPSSPDGGEPGYIREGFLA 213
Query: 213 LQQVLDSFIIFAAQQTGANVATENVEIPPSNLSGTHLSLKQPWTLYSPSNIRMVPFPTRE 272
+Q +D I+ T A + + + + PFP
Sbjct: 214 MQHAVDKAIMRYHANTSAQQLFQKLMVI----------------------TKRFPFPP-- 249
Query: 273 YTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLYMMGLKDGIFHLSWF 332
Y D F I+ + +L +L F Y +I V EKE+K++E + MMGL + +WF
Sbjct: 250 YISDPFLIAIQYQLPLLLMLSFTYTSLTIIRAVVQEKEKKLKEYMRMMGLNSWLHWSAWF 309
Query: 333 ITYAAQFAVSSGIIT-----ACTMD-SLFKYSDKTVVFTYFFSFGLSAITLSFFISTFFA 386
+ + F + +T D ++ SD ++V + F +S+I+ SF +STFF+
Sbjct: 310 LMFFLFFLIVVSFMTLLFCVKVKKDIAVLSNSDPSLVLAFLLCFAISSISFSFMVSTFFS 369
Query: 387 RAKTAVAVGTLSFLGAFFPYYTVNDEAVPMVL--KVIASLLSPTAFALGSVNFADYERAH 444
+A A AVG + + PY+ V M L K+++ LLS A A+G+ +E
Sbjct: 370 KANIAAAVGGFLYFFTYTPYFFVAPRYNWMTLSQKLLSCLLSNVAMAMGAQLIGKFEAKG 429
Query: 445 VGLRWSNMWR---ASSGVNFLVCLLMMLLDTLLYGVIGLYLDKVLPKENGVRYRWNFIFQ 501
G++W ++ F L M+LLD+ LYG++ Y++ V P + GV W+F
Sbjct: 430 TGIQWRDLLNPVNVDDNFCFGQVLGMLLLDSALYGLVTWYVEAVFPGQFGVPQPWHFFLM 489
Query: 502 NCF--RRKKSVIKHHVSSAEVKINKKLSKEKECAFALDACEPVVEAISLDMKQQEVDGRC 559
+ ++V+ ++ + K L E EA D+ V G
Sbjct: 490 PSYWCGNPRTVVGKEEEGSDPE--KALRNE------------YFEAEPEDL----VAG-- 529
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I+I+ L KV+ + + L L LYE QI LLGHNGAGK+TT+S+L GL PPT+G
Sbjct: 530 IKIKHLSKVFQVGNKDKMGIRDLTLNLYEGQITVLLGHNGAGKTTTMSLLTGLFPPTSGH 589
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 679
A + G I+ DM +IRK LG+CPQ+D+LF LTV EHL +A LKG+ + V +M+
Sbjct: 590 AYIHGYEISQDMAQIRKSLGLCPQHDVLFDNLTVAEHLYFYAQLKGLSLQKCPEEVKQML 649
Query: 680 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 739
+ L DK ++ + LSGGMKRKLS+GIALI SKV++LDEPTSGMD S R W L+++
Sbjct: 650 HILSLEDKRDLRSKFLSGGMKRKLSIGIALIAGSKVLMLDEPTSGMDAVSRRAIWDLLQQ 709
Query: 740 IKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKSAP-D 798
K R +LLTTH MDEA+ LGDRIAI+A G L+CCGSSLFLK +YG GY +TLVK +
Sbjct: 710 QKSDRTVLLTTHFMDEADLLGDRIAILAKGELQCCGSSLFLKQKYGAGYHMTLVKEPHCN 769
Query: 799 ASAAADIVYRHIPSALCVSEVGTEITFKLPLASSSSFESMFREIESCIRKSVSKVEADAT 858
+ +V+ H+P+A+ S G E++F LP S+ FES+F ++E ++
Sbjct: 770 PEGISQLVHHHVPNAMLESHAGAELSFILPKESTHRFESLFAKLEKKQKE---------- 819
Query: 859 EDTDYLGIESFGISVTTLEEVFLRVAGCNLDESECISQRNNLVTLDYVSAESDDQAPKRI 918
LGI SFG SVTT+EEVFLRV G +D S I Q L L Y Q +R
Sbjct: 820 -----LGIASFGASVTTMEEVFLRV-GKLVDTSMDI-QAIQLPALQY-------QHERRA 865
Query: 919 SNCKLFGNYKWVFGFIVTVVQRACTLIVAAVLGFLNFLIKKCCTCCIISRSMFWQHCKAL 978
S+ L N V T + A++ L+K T + FW A+
Sbjct: 866 SDWALDSNLCGVMD---------PTNGIGALIEEEEVLVK-LNTGLALHCQQFW----AM 911
Query: 979 FIKRAVSARRDRKTIVFQLLIPAIFLLVGLLFLKLKPHPDMLSVTFTTSNFN-PLLS--- 1034
F+K+A + R+ K + Q+L+P L + +L++ +T+ F+ PLL
Sbjct: 912 FLKKAAYSWREWKMVAAQVLVPLTCLTL-----------ALLAIHYTSEIFDDPLLKLSL 960
Query: 1035 GGGGGGPIPFDLSWPIANEVSKYIQGGWIQRFKQSSYRFPNAEKALADAVDAAGPTLGPV 1094
G +PF + P + +++ + + L D + A V
Sbjct: 961 NEYGRTVVPFSV--PGTSRLAQQLS------------------ENLRDMLQAERQEPREV 1000
Query: 1095 LLSMSEYLM-------SSFNESYQSRYGAIVMDDQNDDGSLGF-TVLHNSSCQHAGPTFI 1146
L + E+L+ FNE +V D G L T L N+ H+ T +
Sbjct: 1001 LGDLEEFLVFRASVEGGGFNER------CLVATSFKDRGELTVVTALFNNQAYHSPATAL 1054
Query: 1147 NVMNTAILRLATGNRNMTIRTRNHPLPTTQSQQLQRH---DLDAFSVSIIISIAFSFIPA 1203
+++ + +L G + +I N+P P Q + H F +++ + IA +F+ +
Sbjct: 1055 AIVDNLLFKLLCGPQ-ASIEISNYPQPRNTLQVAKDHFNEGRKGFDIALNLLIAMAFLAS 1113
Query: 1204 SFAVAIVKEREVKAKQQQLISGVSVLSYWTSTYIWDFISFLFPSSCAIILFYIFGLDQFV 1263
+F++ V ER V+AK Q +SGV V ++W S +WD ISFL PS +++F F + F
Sbjct: 1114 TFSILAVSERAVQAKHVQFVSGVHVATFWFSALLWDLISFLVPSLLLLVVFQAFNVHAFT 1173
Query: 1264 GRGCLLPTVLIFLGYGLAIASSTYCLTFFFSDHTMAQNVVLLVHFFTGLILMVISFIM-- 1321
G + +L+ + YG AI Y ++FFFS + A + + + +G+ ++ IM
Sbjct: 1174 RDGHMADLLLLLMLYGWAIIPLMYLMSFFFSAASTAYTRLTIFNILSGIATFIMVTIMRI 1233
Query: 1322 ---GLLEATRSANSL------------LKNFFR--LSPGFCFADGLASLALLRQGMKDKT 1364
L E +R+ + + + NF+ + +C + LA+ + ++ +
Sbjct: 1234 PAVKLEELSRTLDHVFLVLPNHCLGMAVSNFYENYETRRYCTSSELAAHYCKKYNIQYQE 1293
Query: 1365 SDGVFDWNVTSASICYLGCESICYFLLTLGLELLPSHKWTLMTIKEWWKGTRHRLCNTPS 1424
S + W+ + LTL + + W L T +C
Sbjct: 1294 S--FYAWSTPGVGKFVTSMAASGGIYLTLLFLIETNLLWRLRTF----------ICAFRR 1341
Query: 1425 SYLEPLLQSSSESDTLDLNEDIDVQVERNRVLSGSVDNAI---IYLRNLRKVYPGGKRSD 1481
+ LQ+ + L ED DV ER+R+L S+D+ + + + L KVY +
Sbjct: 1342 RWTLAELQNRTSV----LPEDQDVAEERSRILVPSLDSMLDTPLIINELSKVY---DQRA 1394
Query: 1482 AKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAA 1541
+AV ++ +VQ GECFG LG NGAGKTTT M++GEE T G AF+ G I SD
Sbjct: 1395 PLLAVDRISLAVQKGECFGLLGFNGAGKTTTFKMLTGEETITSGDAFVGGYSISSDIGKV 1454
Query: 1542 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFT 1601
R+ +GYCPQFDALL+++T +E L +YAR++G+ E ++ V L L HA K T
Sbjct: 1455 RQRMGYCPQFDALLDHMTGREMLVMYARLRGIPERLINACVENTLRGLLLEPHANKLVKT 1514
Query: 1602 LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1661
SGGNKRKLS IA+IG+P ++ LDEPSTGMDP+A+R +W+ ++R R+ A+++T+H
Sbjct: 1515 YSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVAR--ARESGKAIVITSH 1572
Query: 1662 SMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVK 1703
SM E +ALCTR+ IMV GQ +C+GSPQHLK++FG+ L+ K
Sbjct: 1573 SMEECEALCTRLAIMVQGQFKCLGSPQHLKSKFGSGYSLQAK 1614
|
Plays an important role in the formation of pulmonary surfactant, probably by transporting lipids such as cholesterol. Mus musculus (taxid: 10090) |
| >sp|Q54BT5|ABCA3_DICDI ABC transporter A family member 3 OS=Dictyostelium discoideum GN=abcA3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 544 bits (1401), Expect = e-153, Method: Compositional matrix adjust.
Identities = 495/1751 (28%), Positives = 782/1751 (44%), Gaps = 272/1751 (15%)
Query: 1 MGTAKRHLKAMLRKNWLLKVRHPFVTAAEILLPTVVMLLLIAVRTRVDTRIHPAQPYIRK 60
MG K L +L+KN LLK + EIL P +V+ +L + + I P
Sbjct: 1 MGEFKFQLVTLLKKNSLLKGKSKIKFIGEILAPMIVIGILFGL-LYLSAIIQP------- 52
Query: 61 DMFVEIGKGVSPNFVQALELMLAKGEYLAFA---PDTEETRTMINLMSIKFPKLKLVSRI 117
SP + ++ + + L A P +T++N + ++KL
Sbjct: 53 --------DFSPRYASGFTEVVGRLKKLLVATNGPLVPYQQTIVNNLR---KQIKLAHPD 101
Query: 118 YKDELELETY-IRSDLYGTCSQVKDCLNPK-IKGAVVFHDQ-----GPELFDYSIRLNHT 170
Y +E + + I D D N + + G + F + P++ YSI ++
Sbjct: 102 YTNEYIDQCFEIFQDFESMQGYFLDPENYRGVMGGLWFDENDYRYNAPKVLKYSISVD-- 159
Query: 171 WAFSGFPDVKTIMDTNGPYLNDLELGVNIIPTMQYSFSGFLTLQQVLDSFIIFAAQQTGA 230
Y ND + ++ Q + T Q IF AQ
Sbjct: 160 ----------------ADYTNDNNIQISPRSDSQIYLRHYFTQIQTAVDQAIFMAQ---- 199
Query: 231 NVATENVEIP----PSNLSGTHLSLKQPWTLYSPSNIRMVPFPTREYTDDEFQSIIKRVM 286
NVEIP ++ L Q WT D I+K
Sbjct: 200 -----NVEIPMVVTGQRFPNPYIHLWQTWT-------------------DGRNMILKETG 235
Query: 287 GVLYLLGFLYPISRLISYSVFEKEQKIREGLYMMGLKDGIFHLSWFITYAAQFAVSSGII 346
G+ + I+ V EKE KI E + +MGL +++S I+ S+ I+
Sbjct: 236 GIFITAAIFVGLFTTITNMVMEKESKILEAMKIMGLHSLPYYVSIAISSCYTIIPSTIIV 295
Query: 347 TACTMDSLFKYSDKTVVFTYFFS-FGLSAITLSFFISTFFARAKTAVAVGTLSFLGAFFP 405
S ++ + + T F +S I L+F +S FF R+K A V L L
Sbjct: 296 IVVLKGSQLIWTTQWYILTIILILFSISLILLAFILSKFFNRSKFAGLVCFLIVLIMAGI 355
Query: 406 YYTVNDEAVPMVLKVIASLLSPTAFALG--SVNFADYERAH-VGLRWSNMWRASSGVNFL 462
VN V +K+I LLSP A +L S++ D E V WS + + +
Sbjct: 356 GIAVNHINVSTTVKLIFCLLSPVAISLANYSMSMKDLELVKIVNPDWSIIVSENQVIG-- 413
Query: 463 VCLLMMLLDTLLYGVIGLYLDKVLPKENGVRYRWNFIFQNCFRRKKSVIKHHVSSAEVKI 522
M++LD +LY + Y+D ++ E G + F + KK+ ++ + I
Sbjct: 414 ----MLILDVVLYAALVWYIDNIISGEFGQSKPFYFFLTKSYWCKKNANENDLVDLSKAI 469
Query: 523 NKKLSKEKECAFALDACEPVVEAISLDMKQQEVDGR--CIQIRKLHKVYATKRGNCCAVN 580
L K+ LD S D + E+ IQIRKL K + T G AV+
Sbjct: 470 ESPLYLRKK---DLDYNN------SQDFELNEIHSSKATIQIRKLRKEFKTGDGKRVAVD 520
Query: 581 SLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGV 640
L + +Y+++I LG NG+GKSTTI ML GLI T G AL+ G +I ++D IRK +GV
Sbjct: 521 DLSIDMYQDRIHCFLGPNGSGKSTTIGMLTGLITCTRGSALINGLDINQNIDLIRKNIGV 580
Query: 641 CPQYDILFPELTVREHLEMFAVLKG---VKEELLESVVAEMVDEVGLADKVNIVVRALSG 697
Q DI++ LTV EHL +A LKG +KE E+ +M EVGL K++ LSG
Sbjct: 581 VLQQDIIWDNLTVLEHLIFYAQLKGYSNLKEAKTEA--KKMGIEVGLELKLHNKAGTLSG 638
Query: 698 GMKRKLSLGIALIG-DSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEA 756
G KRKL LGIA IG +S ++ LDE +SG+DP S I KKG+ I+L+TH MDEA
Sbjct: 639 GQKRKLCLGIAFIGPNSNILFLDEVSSGLDPLSRSEVQDFIISKKKGKTIILSTHYMDEA 698
Query: 757 EELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKSAP--DASAAADIVYRHIPSAL 814
+ LGD I+I+A+G LKC GS LFLK+++GVGY LT+ K + + + +I ++I A
Sbjct: 699 DLLGDTISIIAHGKLKCNGSPLFLKNRFGVGYLLTITKKSTEFNKDSVMEITNKYIKQAH 758
Query: 815 CVSEVGTEITFKLPLASSSSFESMFREIESCIRKSVSKVEADATEDTDYLGIESFGISVT 874
+S+ GTE++ +LP+ S F F+ +E C + L I+S+GIS++
Sbjct: 759 ILSDAGTELSIRLPMESLPMFSQYFKHLEDC---------------KNQLLIDSYGISIS 803
Query: 875 TLEEVFLRVAGCNLDESECISQRNNLVTLDYVSAESDDQAPKRISNCKLFGNYKWVFGFI 934
TLEEVFL++ E + N +D A K + K G
Sbjct: 804 TLEEVFLKIG------QETLKSTPNF----------NDPAVKEALSTKSSG--------- 838
Query: 935 VTVVQRACTLIVAAVLGFLNFLIKKCCTCCIISRSMFWQHCKALFIKRAVSARRDRKTIV 994
V V Q+ L LIK+ CT ++D K+ +
Sbjct: 839 VKVGQQLKGL-----------LIKRICT-----------------------TKKDFKSFM 864
Query: 995 FQLLIPAIFLLVGLLFLKLKPHPDMLSVTFTTSNFNPLLSGGGGGGPIPFDLSWPIANEV 1054
F +++P I L +GL+ M T FN D++ P+ +
Sbjct: 865 FSIVVPLIILALGLV---------MYKNMRTIETFN--------------DVTTPLTFSI 901
Query: 1055 SKYIQGGWIQRFKQSSYRFPNAEKALADAVD-----AAGPTLGPVLLSMSEYLMSSFNES 1109
Y ++ P + A+D + G + LL E L +
Sbjct: 902 DDYGDNIYV----------PWSISGQNQAIDLRIKNSIGKSNHSKLLPADE-LEDYLTLN 950
Query: 1110 YQSRYGAIVMDDQ--NDDGSLGFTVLHNSSCQHAGPTFINVMNTAILRLATGNRNMTIRT 1167
Y+ GA D L F V +N HA P +IN ++ +L G + I+T
Sbjct: 951 YEGNPGAFAFGKTIIEDIEMLSFKVYYNRDYLHALPIYINFVDNLMLSNLGG---VGIQT 1007
Query: 1168 RNHPLPTTQSQ---QLQRHDLDAFSVSIIISI-AFSFIPASFAVAIVKEREVKAKQQQLI 1223
+ P +S+ ++ + A II+++ AF+ + AS A I +ER + K+ I
Sbjct: 1008 TSRPFQHIKSKFELATEKINFSAIIFFIILTLAAFALVVASHAGNIAQERAARIKRLLYI 1067
Query: 1224 SGVSVLSYWTSTYIWDFI-SFLFPSSCAIILFYIFGLDQFVGRGCLLPTVLIFLGYGLAI 1282
SG+ YW S IWD++ +F+ A+++ I +F + L L+ + AI
Sbjct: 1068 SGLKKYVYWLSNLIWDYVLTFIMVIFLAVVVVIIDS--KFRNQFPLFICALVL--FVTAI 1123
Query: 1283 ASSTYCLTFFFSDHTMAQNVVLLVHFFTGLILMVISFIMGLLEATRSANSLLKNFFRL-- 1340
+Y ++ +S H A + +HF GL++ V FI+ + + N +L+ +
Sbjct: 1124 IPLSYLFSYCWSSHGKATGFIFGIHFGIGLLMTVTCFILRIW-VIKDDNDILQTITDIID 1182
Query: 1341 --SPGFCFADGLASLALLRQGMKDKTSDG----VFDWNVTSA--SICYLGCESICYFLLT 1392
F + + ++ T G W + +C+L ++ + +
Sbjct: 1183 LVFFFFSPFYCFSKVMVIISNFPGTTRLGESYIANYWGIKFGLPPVCFLALHTLVWTIWI 1242
Query: 1393 LGLELLPSHKWTLMTIKEWWKGTRHRLCNTPSSYLEPLLQSSSESDTLDLNEDIDVQVER 1452
+ L+ P + ++ KG + P S +ED DV ER
Sbjct: 1243 MVLDYYPELR------GKYRKGRNEKSSPPPPS-----------------DEDSDVSHER 1279
Query: 1453 NRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTT 1512
++VLS N I +R+ K+Y G ++ +AV++ + S+ G+ FG LG NGAGK+TT
Sbjct: 1280 SKVLSFETSNDPIIMRDFFKLYKGKGKAKDNLAVYNTSLSIPKGQTFGLLGLNGAGKSTT 1339
Query: 1513 LSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKG 1572
L +SGE P+ G F+ G +I++ A R +G+C Q+++L+ L+ +E + LY RIKG
Sbjct: 1340 LGCLSGEVIPSGGEIFVNGFNIQTQRLDALRSVGFCHQYNSLIGLLSAREQIRLYCRIKG 1399
Query: 1573 VAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGM 1632
+ E ++ + V + DL SGGNKRK+++++A++G+P + LDE S G+
Sbjct: 1400 IEESKIQETVEAFIKMMDLGSIGNSNVAGYSGGNKRKVALSVAIVGNPSVCFLDEVSAGV 1459
Query: 1633 DPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692
DP+ RFMW VI+ L + +ILTTHSM E A+C R+ IM G++ C+GS QH+K
Sbjct: 1460 DPVVARFMWNVITELKKDK---VIILTTHSMLECSAVCDRLTIMKSGKMMCLGSIQHIKD 1516
Query: 1693 RFGNFLELEVK 1703
+FG+ ++VK
Sbjct: 1517 KFGSGYSIDVK 1527
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|P34358|CED7_CAEEL ABC transporter ced-7 OS=Caenorhabditis elegans GN=ced-7 PE=1 SV=6 | Back alignment and function description |
|---|
Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust.
Identities = 474/1789 (26%), Positives = 805/1789 (44%), Gaps = 243/1789 (13%)
Query: 6 RHLKAMLRKNWLLKVRHPFVTAAEILLPTVVM-LLLIAVRTRVDTRIHPAQPYIR----- 59
R +L K+W+L R+ T E+++P +++ L+ V D P Y
Sbjct: 5 RQFSLLLWKDWVLLRRNKVWTLFELIIPCLLLGPLVYLVVKNADHTSSPENIYDNFQVKG 64
Query: 60 --KDMFVEIGKGVSPNFVQAL--ELMLAKGEYLAF-APDTEETRTMINLMS-----IKFP 109
+D+F+E NF++ + L + + + D RT+ +LM +
Sbjct: 65 TVEDVFLE------SNFIKPIYKRWCLRSDVVVGYTSKDAAAKRTVDDLMKKFAERFQSA 118
Query: 110 KLKLVSRIYKDELELETYIRSDLYGTCSQVKDCLNPKIKGAVVFH--DQGPELFDYSIRL 167
KLKL + E +L T +R+DL ++ +N G VVF D + +Y I L
Sbjct: 119 KLKLSVKNESSEEQLLTVLRNDL-PMLNETFCAINSYAAG-VVFDEVDVTNKKLNYRILL 176
Query: 168 ----NHTWAFSGFPDVKTIMDTNGPYLNDLELGVNIIPTMQYSFSGFLTLQQVLDSFIIF 223
TW + +T + GP I + Y S FLT Q ++S +
Sbjct: 177 GKTPEETWHLT-----ETSYNPYGPSSGRYS---RIPSSPPYWTSAFLTFQHAIESSFLS 228
Query: 224 AAQQTGANVATENVEIPPSNLSGTHLSLKQPWTLYSPSNIRMVPFPTREYTDDEFQSIIK 283
+ Q ++ P +R +P P Y + I
Sbjct: 229 SVQSGAPDL---------------------------PITLRGLPEP--RYKTSSVSAFID 259
Query: 284 RVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLYMMGLKDGIFHLSWFITYAAQFAVSS 343
+ + F+ I I+ + + ++ L MGL +F+ + + +F V
Sbjct: 260 FFPFIWAFVTFINVIH--ITREIAAENHAVKPYLTAMGLSTFMFYAAHVVMAFLKFFV-- 315
Query: 344 GIITACTMDSL---FKYSDKTVVFTYFFSFGLSAITLSFFISTFFARAKTAVAVGTLSFL 400
I C++ L ++ + +GL A+ F+++FF +A+ +++
Sbjct: 316 --IFLCSIIPLTFVMEFVSPAALIVTVLMYGLGAVIFGAFVASFFNNTNSAIKAILVAWG 373
Query: 401 GAFFPYYTVNDEAVPMVLKVIASLLSPTAFALGSVNFADYERAHVGLRWSNMWRASSGVN 460
Y + E + + L AFAL +DY R L +NM+ SS ++
Sbjct: 374 AMIGISYKLRPELDQISSCFLYGLNINGAFALAVEAISDYMRRERELNLTNMFNDSS-LH 432
Query: 461 FLV--CLLMMLLDTLLYGVIGLYLDKVLPKENGVRYRWNFIFQNCFRRKKSVIKHH---- 514
F + L+MM++D L + L +D + R +F + F + +
Sbjct: 433 FSLGWALVMMIVDILWMSIGALVVDHI-------RTSADFSLRTLFDFEAPEDDENQTDG 485
Query: 515 VSSAEVKINKKLS---KEKECAFALDACE------PVVEAISLDMKQQEVDGRC------ 559
V++ +IN+++ + + ++ P ++ SL E DG
Sbjct: 486 VTAQNTRINEQVRNRVRRSDMEIQMNPMASTSLNPPNADSDSLLEGSTEADGARDTARAD 545
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I +R L K+++T AV+ L L Q LLGHNGAGKSTT S + G+I PT G
Sbjct: 546 IIVRNLVKIWSTTGER--AVDGLSLRAVRGQCSILLGHNGAGKSTTFSSIAGIIRPTNGR 603
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 679
+ G ++ + E R+ +G+CPQY+ L+ +LTV EHL++ LKG +E+ + + ++
Sbjct: 604 ITICGYDVGNEPGETRRHIGMCPQYNPLYDQLTVSEHLKLVYGLKGAREKDFKQDMKRLL 663
Query: 680 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 739
+V L K N LSGGMKRKL + +ALIGDS+VV+LDEPT+GMDP + + +L+++
Sbjct: 664 SDVKLDFKENEKAVNLSGGMKRKLCVCMALIGDSEVVLLDEPTAGMDPGARQDVQKLVER 723
Query: 740 IKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLV-----K 794
K R ILLTTH MDEAE LGD + IM++G L G++ +LK ++G GY LT+V
Sbjct: 724 EKANRTILLTTHYMDEAERLGDWVFIMSHGKLVASGTNQYLKQKFGTGYLLTVVLDHNGD 783
Query: 795 SAPDASAAADIVYRHIPSALCVSEVGTEITFKLPLASSSSFESMFREIESCIRKSVSKVE 854
A D+ ++ A G +I LP A F +F+ +E+ ++
Sbjct: 784 KRKMAVILTDVCTHYVKEAERGEMHGQQIEIILPEARKKEFVPLFQALEAIQDRNYRSNV 843
Query: 855 ADATEDT-----DYLGIESFGISVTTLEEVFLRVAGCNLDESECISQRNNLVTLDYVSAE 909
D +T L + SFG+S+ TLE+VF+ + G +D++ S++N+ ++ + +A
Sbjct: 844 FDNMPNTLKSQLATLEMRSFGLSLNTLEQVFITI-GDKVDKA-IASRQNSRISHNSRNAS 901
Query: 910 SDDQAPKRI---SNCKLFGNYKWVFGFIVTVVQRACTLIVAAVLGFLNFLIKKCCTCCII 966
P S+ K +Y+ + +++ + V F++ + KK
Sbjct: 902 EPSLKPAGYDTQSSTKSADSYQKLMDSQARGPEKSG--VAKMVAQFISIMRKKF------ 953
Query: 967 SRSMFWQHCKALFIKRAVSARRDRKTIVFQLLIPAIFL-LVGLLFLKLKPHPDMLSV-TF 1024
+ +RR+ + Q+LIP I L LVG L + D SV +
Sbjct: 954 -----------------LYSRRNWAQLFTQVLIPIILLGLVGSLTTLKSNNTDQFSVRSL 996
Query: 1025 TTSNFNP-LLSGGGGGGPIPFDLSWPIANEVSKYIQ--GGWIQRFKQSSYRFPNAEKALA 1081
T S P + G IP + A K ++ GG+ + PN K+L
Sbjct: 997 TPSGIEPSKVVWRFENGTIPEE-----AANFEKILRKSGGFEVLNYNTKNPLPNITKSLI 1051
Query: 1082 DAVDAAGPTLGPVLLSMSEYLMSSFNESYQSRYGAIVMDDQNDDGSLGFTVLHNSSCQHA 1141
+ A T+G + M+ N L N H
Sbjct: 1052 GEMPPA--TIG------------------------MTMNSDN------LEALFNMRYYHV 1079
Query: 1142 GPTFINVMNTAILRLATGNRNMTIRTRN--HPLPTTQSQQLQRHDLDAFSVSIIISIAFS 1199
PT I+++N A L TG + I + + T+ S L +D ++I I F+
Sbjct: 1080 LPTLISMINRARL---TGTVDAEISSGVFLYSKSTSNSNLLPSQLIDVLLAPMLILI-FA 1135
Query: 1200 FIPASFAVAIVKEREVKAKQQQLISGVSVLSYWTSTYIWDFISFLFPSSCAIILFYIFGL 1259
+ ++F + +++ER + QQ ++G+S +++++++ I+D I L+ C I LF
Sbjct: 1136 MVTSTFVMFLIEERTCQFAHQQFLTGISPITFYSASLIYDGI--LYSLICLIFLFMFLAF 1193
Query: 1260 DQFVGRGCLLPTVLIFLGYGLAIASSTYCLTFFFSDHTMAQNVVLLVH--FFTGLILMVI 1317
L +L + Y + Y ++F F + A NV+L++ +G L+ +
Sbjct: 1194 HWMYDH--LAIVILFWFLYFFSSVPFIYAVSFLFQSPSKA-NVLLIIWQVVISGAALLAV 1250
Query: 1318 SFIMGLLEATRSANSLLKNFFR-LSPGFCFADGLASLALLRQGMKDKTSDGVFDWNVTSA 1376
I + S+L N F L P + F G A + + GM S+ + +W+
Sbjct: 1251 FLIFMIFNIDEWLKSILVNIFMFLLPSYAF--GSAIITINTYGMI-LPSEELMNWDHCGK 1307
Query: 1377 SICYLGCESICYFLLTLGLELLPSHKWTLMTIKEWWKGTRHRLCNT-PSSYLEPLLQSSS 1435
+ +G +C F L + L+ K+ + + W R N P P+ +S S
Sbjct: 1308 NAWLMGTFGVCSFALFVLLQF----KFVRRFLSQVWTVRRSSHNNVQPMMGDLPVCESVS 1363
Query: 1436 ESDTLDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQA 1495
E ER RV + N+ + +++L K + G+ + AV+ L +V
Sbjct: 1364 E--------------ERERVHRVNSQNSALVIKDLTKTF--GRFT----AVNELCLAVDQ 1403
Query: 1496 GECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALL 1555
ECFG LG NGAGKTTT ++++G+ + + G A I G+D+ IGYCPQFDAL+
Sbjct: 1404 KECFGLLGVNGAGKTTTFNILTGQSFASSGEAMIGGRDVTELIS-----IGYCPQFDALM 1458
Query: 1556 EYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIA 1615
LT +E LE+ A++ G Y+ ++ + V ++ HA K SGG KRK+SV +A
Sbjct: 1459 LDLTGRESLEILAQMHGFENYKAKAELILECV--GMIAHADKLVRFYSGGQKRKISVGVA 1516
Query: 1616 MIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQ-GKTAVILTTHSMNEAQALCTRIG 1674
++ ++ILDEP+ G+DP A+R +WE++ L R+ +A++LT+HSM+E +ALC+RI
Sbjct: 1517 LLAPTQMIILDEPTAGIDPKARREVWELL--LWCREHSNSALMLTSHSMDECEALCSRIA 1574
Query: 1675 IMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQERV 1723
++ G L IGS Q LK+ +GN + + E + D+ + Q++Q R+
Sbjct: 1575 VLNRGSLIAIGSSQELKSLYGNNYTMTLSLYEPNQRDM--VVQLVQTRL 1621
|
Functions in the engulfment of cell corpses during embryonic programed cell death to translocate molecules that mediate homotypic adhesion between cell surfaces of the dying and engulfing cells. Caenorhabditis elegans (taxid: 6239) |
| >sp|O95477|ABCA1_HUMAN ATP-binding cassette sub-family A member 1 OS=Homo sapiens GN=ABCA1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 436 bits (1122), Expect = e-121, Method: Compositional matrix adjust.
Identities = 306/923 (33%), Positives = 458/923 (49%), Gaps = 169/923 (18%)
Query: 164 SIRLNHTWAFSGFPDVKTIMDTN---------GPYLNDLELGVNIIPTMQYSFSGFLTLQ 214
SI L H + D+ + TN GP + E M+Y + GF LQ
Sbjct: 545 SIELPHHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFE-------DMRYVWGGFAYLQ 597
Query: 215 QVLDSFIIFAAQQTGANVATENVEIPPSNLSGTHLSLKQPWTLYSPSNIRMVPFPTREYT 274
V++ II L+GT + + M P Y
Sbjct: 598 DVVEQAIIRV-------------------LTGTE----------KKTGVYMQQMPYPCYV 628
Query: 275 DDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLYMMGLKDGIFHLSWFIT 334
DD F ++ R M + L ++Y ++ +I V+EKE +++E + +MGL + I SWFI+
Sbjct: 629 DDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIVYEKEARLKETMRIMGLDNSILWFSWFIS 688
Query: 335 YAAQFAVSSGIITAC-TMDSLFKYSDKTVVFTYFFSFGLSAITLSFFISTFFARAKTAVA 393
VS+G++ + +L YSD +VVF + F + I F IST F+RA A A
Sbjct: 689 SLIPLLVSAGLLVVILKLGNLLPYSDPSVVFVFLSVFAVVTILQCFLISTLFSRANLAAA 748
Query: 394 VGTLSFLGAFFPYY--TVNDEAVPMVLKVIASLLSPTAFALGSVNFADYERAHVGLRWSN 451
G + + + PY + V LK+ ASLLSP AF G FA +E +G++W N
Sbjct: 749 CGGIIYFTLYLPYVLCVAWQDYVGFTLKIFASLLSPVAFGFGCEYFALFEEQGIGVQWDN 808
Query: 452 MWRA---SSGVNFLVCLLMMLLDTLLYGVIGLYLDKVLPKENGVRYRWNF-IFQNCFRRK 507
++ + G N + MML DT LYGV+ Y++ V P + G+ W F ++ + +
Sbjct: 809 LFESPVEEDGFNLTTSVSMMLFDTFLYGVMTWYIEAVFPGQYGIPRPWYFPCTKSYWFGE 868
Query: 508 KSVIKHHVSSAEVKINKKLSKEKECAFALDACEPVVEAISLDMKQQEVDGRCIQIRKLHK 567
+S K H S + +I++ +E+ L + I+ L K
Sbjct: 869 ESDEKSHPGSNQKRISEICMEEEPTHLKLG----------------------VSIQNLVK 906
Query: 568 VYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI 627
VY + G AV+ L L YE QI + LGHNGAGK+TT+S+L GL PPT+G A + GK+I
Sbjct: 907 VY--RDGMKVAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDI 964
Query: 628 TADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGL-AD 686
++M IR+ LGVCPQ+++LF LTV EH+ +A LKG+ E+ +++ + +M +VGL +
Sbjct: 965 RSEMSTIRQNLGVCPQHNVLFDMLTVEEHIWFYARLKGLSEKHVKAEMEQMALDVGLPSS 1024
Query: 687 KVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRII 746
K+ LSGGM+RKLS+ +A +G SKVVILDEPT+G+DPYS R W+L+ K ++GR I
Sbjct: 1025 KLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYRQGRTI 1084
Query: 747 LLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVK------------ 794
+L+TH MDEA+ LGDRIAI+++G L C GSSLFLK+Q G GY LTLVK
Sbjct: 1085 ILSTHHMDEADVLGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVESSLSSCRN 1144
Query: 795 ----------------SAPDA---------------SAAADIVYRHIPSALCVSEVGTEI 823
S+ DA SA ++++ +H+ A V ++G E+
Sbjct: 1145 SSSTVSYLKKEDSVSQSSSDAGLGSDHESDTLTIDVSAISNLIRKHVSEARLVEDIGHEL 1204
Query: 824 TFKLPL--ASSSSFESMFREIESCIRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFL 881
T+ LP A +F +F EI+ D D LGI S+GIS TTLEE+FL
Sbjct: 1205 TYVLPYEAAKEGAFVELFHEID------------DRLSD---LGISSYGISETTLEEIFL 1249
Query: 882 RVA---GCNLDESECI--SQRNNLVTLDYVSA----ESDDQAPKRISNCKLFGNYKWVFG 932
+VA G + + S+ ++RN D S DD A S+
Sbjct: 1250 KVAEESGVDAETSDGTLPARRNRRAFGDKQSCLRPFTEDDAADPNDSDID---------- 1299
Query: 933 FIVTVVQRACTLIVAAVLGFLNFLIKKCCTCCIISRSMFWQHCKALFIKRAVSARRDRKT 992
+ T +++ + G ++ +K + Q AL KR + ARR RK
Sbjct: 1300 -----PESRETDLLSGMDGKGSYQVK--------GWKLTQQQFVALLWKRLLIARRSRKG 1346
Query: 993 IVFQLLIPAIFLLVGLLFLKLKP 1015
Q+++PA+F+ + L+F + P
Sbjct: 1347 FFAQIVLPAVFVCIALVFSLIVP 1369
|
cAMP-dependent and sulfonylurea-sensitive anion transporter. Key gatekeeper influencing intracellular cholesterol transport. Homo sapiens (taxid: 9606) |
| >sp|P41233|ABCA1_MOUSE ATP-binding cassette sub-family A member 1 OS=Mus musculus GN=Abca1 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 433 bits (1114), Expect = e-120, Method: Compositional matrix adjust.
Identities = 306/941 (32%), Positives = 464/941 (49%), Gaps = 173/941 (18%)
Query: 146 KIKGAVVFHDQGPELFDYSIRLNHTWAFSGFPDVKTIMDTN---------GPYLNDLELG 196
K +VF P+ S+ L H + D+ + TN GP + E
Sbjct: 531 KFWAGIVFTGITPD----SVELPHHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFE-- 584
Query: 197 VNIIPTMQYSFSGFLTLQQVLDSFIIFAAQQTGANVATENVEIPPSNLSGTHLSLKQPWT 256
M+Y + GF LQ V++ II TG+ T G +
Sbjct: 585 -----DMRYVWGGFAYLQDVVEQAIIRVL--TGSEKKT-----------GVY-------- 618
Query: 257 LYSPSNIRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREG 316
++ +P+P Y DD F ++ R M + L ++Y ++ +I V+EKE +++E
Sbjct: 619 ------VQQMPYPC--YVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKSIVYEKEARLKET 670
Query: 317 LYMMGLKDGIFHLSWFITYAAQFAVSSGIITAC-TMDSLFKYSDKTVVFTYFFSFGLSAI 375
+ +MGL +GI SWF++ VS+G++ + +L YSD +VVF + F + I
Sbjct: 671 MRIMGLDNGILWFSWFVSSLIPLLVSAGLLVVILKLGNLLPYSDPSVVFVFLSVFAMVTI 730
Query: 376 TLSFFISTFFARAKTAVAVGTLSFLGAFFPYY--TVNDEAVPMVLKVIASLLSPTAFALG 433
F IST F+RA A A G + + + PY + V +K+ ASLLSP AF G
Sbjct: 731 LQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFSIKIFASLLSPVAFGFG 790
Query: 434 SVNFADYERAHVGLRWSNMWRA---SSGVNFLVCLLMMLLDTLLYGVIGLYLDKVLPKEN 490
FA +E +G++W N++ + G N + MML DT LYGV+ Y++ V P +
Sbjct: 791 CEYFALFEEQGIGVQWDNLFESPVEEDGFNLTTAVSMMLFDTFLYGVMTWYIEAVFPGQY 850
Query: 491 GVRYRWNFIFQNCFRRKKSVI-KHHVSSAEVKINKKLSKEKECAFALDACEPVVEAISLD 549
G+ W F + + + K H S++ +++ +E+ L
Sbjct: 851 GIPRPWYFPCTKSYWFGEEIDEKSHPGSSQKGVSEICMEEEPTHLRLG------------ 898
Query: 550 MKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISML 609
+ I+ L KVY + G AV+ L L YE QI + LGHNGAGK+TT+S+L
Sbjct: 899 ----------VSIQNLVKVY--RDGMKVAVDGLALNFYEGQITSFLGHNGAGKTTTMSIL 946
Query: 610 VGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEE 669
GL PPT+G A + GK+I ++M IR+ LGVCPQ+++LF LTV EH+ +A LKG+ E+
Sbjct: 947 TGLFPPTSGTAYILGKDIRSEMSSIRQNLGVCPQHNVLFDMLTVEEHIWFYARLKGLSEK 1006
Query: 670 LLESVVAEMVDEVGLA-DKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPY 728
+++ + +M +VGL K+ LSGGM+RKLS+ +A +G SKVVILDEPT+G+DPY
Sbjct: 1007 HVKAEMEQMALDVGLPPSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPY 1066
Query: 729 SMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGY 788
S R W+L+ K ++GR I+L+TH MDEA+ LGDRIAI+++G L C GSSLFLK+Q G GY
Sbjct: 1067 SRRGIWELLLKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGY 1126
Query: 789 TLTLVK----------------------------SAPDA---------------SAAADI 805
LTLVK S+ DA SA +++
Sbjct: 1127 YLTLVKKDVESSLSSCRNSSSTVSCLKKEDSVSQSSSDAGLGSDHESDTLTIDVSAISNL 1186
Query: 806 VYRHIPSALCVSEVGTEITFKLPL--ASSSSFESMFREIESCIRKSVSKVEADATEDTDY 863
+ +H+ A V ++G E+T+ LP A +F +F EI+ D D
Sbjct: 1187 IRKHVSEARLVEDIGHELTYVLPYEAAKEGAFVELFHEID------------DRLSD--- 1231
Query: 864 LGIESFGISVTTLEEVFLRVA---GCNLDESECI--SQRNNLVTLDYVSA----ESDDQA 914
LGI S+GIS TTLEE+FL+VA G + + S+ ++RN D S DD
Sbjct: 1232 LGISSYGISETTLEEIFLKVAEESGVDAETSDGTLPARRNRRAFGDKQSCLHPFTEDDAV 1291
Query: 915 PKRISNCKLFGNYKWVFGFIVTVVQRACTLIVAAVLGFLNFLIKKCCTCCIISRSMFWQH 974
S+ + T +++ + G ++ +K + Q
Sbjct: 1292 DPNDSDID---------------PESRETDLLSGMDGKGSYQLK--------GWKLTQQQ 1328
Query: 975 CKALFIKRAVSARRDRKTIVFQLLIPAIFLLVGLLFLKLKP 1015
AL KR + ARR RK Q+++PA+F+ + L+F + P
Sbjct: 1329 FVALLWKRLLIARRSRKGFFAQIVLPAVFVCIALVFSLIVP 1369
|
cAMP-dependent and sulfonylurea-sensitive anion transporter. Key gatekeeper influencing intracellular cholesterol transport. Mus musculus (taxid: 10090) |
| >sp|Q9BZC7|ABCA2_HUMAN ATP-binding cassette sub-family A member 2 OS=Homo sapiens GN=ABCA2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 418 bits (1075), Expect = e-115, Method: Compositional matrix adjust.
Identities = 267/817 (32%), Positives = 427/817 (52%), Gaps = 97/817 (11%)
Query: 261 SNIRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLYMM 320
S ++M P+P YT D+F +I+ +M + ++ ++Y ++ I + V EKE +++E + M
Sbjct: 684 SYVQMFPYPC--YTRDDFLFVIEHMMPLCMVISWVYSVAMTIQHIVAEKEHRLKEVMKTM 741
Query: 321 GLKDGIFHLSWFITYAAQFAVSSGIITAC-TMDSLFKYSDKTVVFTYFFSFGLSAITLSF 379
GL + + ++WFIT Q ++S +TA + +S +++ + + ++ I F
Sbjct: 742 GLNNAVHWVAWFITGFVQLSISVTALTAILKYGQVLMHSHVVIIWLFLAVYAVATIMFCF 801
Query: 380 FISTFFARAKTAVAVGTLSFLGAFFPYY------TVNDEAVPMVLKVIASLLSPTAFALG 433
+S +++AK A A G + + ++ PY V + + K IASL+S TAF LG
Sbjct: 802 LVSVLYSKAKLASACGGIIYFLSYVPYMYVAIREEVAHDKITAFEKCIASLMSTTAFGLG 861
Query: 434 SVNFADYERAHVGLRWSNMWRA---SSGVNFLVCLLMMLLDTLLYGVIGLYLDKVLPKEN 490
S FA YE A VG++W ++ N L+ + M+++D ++YG++ Y++ V P
Sbjct: 862 SKYFALYEVAGVGIQWHTFSQSPVEGDDFNLLLAVTMLMVDAVVYGILTWYIEAVHPGMY 921
Query: 491 GVRYRWNFIFQNCFRRKKSVIKHHVSSAEVKINKKLS---KEKECAFALDACEPVVEAIS 547
G+ W F Q + + S +LS +++ CA E E
Sbjct: 922 GLPRPWYFPLQKSYWLGSGRTEAWEWSWPWARTPRLSVMEEDQACAMESRRFE---ETRG 978
Query: 548 LDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTIS 607
++ + + + + KL KVY K A+N L L LYENQ+++ LGHNGAGK+TT+S
Sbjct: 979 MEEEPTHLP-LVVCVDKLTKVY--KDDKKLALNKLSLNLYENQVVSFLGHNGAGKTTTMS 1035
Query: 608 MLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK 667
+L GL PPT+G A ++G +I +MDEIRK LG+CPQ+++LF LTV EHL ++ LK +
Sbjct: 1036 ILTGLFPPTSGSATIYGHDIRTEMDEIRKNLGMCPQHNVLFDRLTVEEHLWFYSRLKSMA 1095
Query: 668 EELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP 727
+E + + +M++++ L++K + +V+ LSGGMKRKLS+ IA +G S+ +ILDEPT+G+DP
Sbjct: 1096 QEEIRREMDKMIEDLELSNKRHSLVQTLSGGMKRKLSVAIAFVGGSRAIILDEPTAGVDP 1155
Query: 728 YSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVG 787
Y+ R W LI K K GR ILL+TH MDEA+ LGDRIAI+++G LKCCGS LFLK YG G
Sbjct: 1156 YARRAIWDLILKYKPGRTILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGTYGDG 1215
Query: 788 YTLTLVK--------------SAPDASA---------AADIVYRHIPSALCVSEVGTEIT 824
Y LTLVK S+P A + + +H+ S L VS+ TE++
Sbjct: 1216 YRLTLVKRPAEPGGPQEPGLASSPPGRAPLSSCSELQVSQFIRKHVASCLLVSDTSTELS 1275
Query: 825 FKLP--LASSSSFESMFREIESCIRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFLR 882
+ LP A +FE +F+ +E + D L + SFG+ TTLEEVFL+
Sbjct: 1276 YILPSEAAKKGAFERLFQHLERSL---------------DALHLSSFGLMDTTLEEVFLK 1320
Query: 883 VA--GCNLDESEC-ISQRNNLVTLDYVSAESDDQAPKRISNCK----------------- 922
V+ +L+ SE + + V S + ++ C
Sbjct: 1321 VSEEDQSLENSEADVKESRKDVLPGAEGPASGEGHAGNLARCSELTQSQASLQSASSVGS 1380
Query: 923 -----------LFGNYKWVFGFIVTVVQRACTLIVAAVLGFLNFLIKKCCTCCIISRSMF 971
++G+Y+ +F + + A L + +K + R
Sbjct: 1381 ARGDEGAGYTDVYGDYRPLFDNPQDPDNVSLQEVEAEALSRVGQGSRKLDGGWLKVRQF- 1439
Query: 972 WQHCKALFIKRAVSARRDRKTIVFQLLIPAIFLLVGL 1008
L +KR ARR+ K + Q+L+PA F+ V +
Sbjct: 1440 ----HGLLVKRFHCARRNSKALFSQILLPAFFVCVAM 1472
|
Probable transporter, its natural substrate has not been found yet. May have a role in macrophage lipid metabolism and neural development. Homo sapiens (taxid: 9606) |
| >sp|Q9ESR9|ABCA2_RAT ATP-binding cassette sub-family A member 2 OS=Rattus norvegicus GN=Abca2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 417 bits (1073), Expect = e-115, Method: Compositional matrix adjust.
Identities = 242/664 (36%), Positives = 380/664 (57%), Gaps = 62/664 (9%)
Query: 260 PSN-IRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLY 318
P N ++M P+P YT D+F +I+ +M + ++ ++Y ++ I + V EKE +++E +
Sbjct: 682 PGNYVQMFPYPC--YTRDDFLFVIEHMMPLCMVISWVYSVAMTIQHIVAEKEHRLKEVMK 739
Query: 319 MMGLKDGIFHLSWFITYAAQFAVSSGIITAC-TMDSLFKYSDKTVVFTYFFSFGLSAITL 377
MGL + + ++WFIT Q ++S +TA + +S +++ + + ++ I
Sbjct: 740 TMGLNNAVHWVAWFITGFVQLSISVTALTAILKYGQVLMHSHVLIIWLFLAVYAVATIMF 799
Query: 378 SFFISTFFARAKTAVAVGTLSFLGAFFPYY------TVNDEAVPMVLKVIASLLSPTAFA 431
F +S +++AK A A G + + ++ PY V + + K IASL+S TAF
Sbjct: 800 CFLVSVLYSKAKLASACGGIIYFLSYVPYMYVAIREEVAHDKITAFEKCIASLMSTTAFG 859
Query: 432 LGSVNFADYERAHVGLRWSNMWRA---SSGVNFLVCLLMMLLDTLLYGVIGLYLDKVLPK 488
LGS FA YE A VG++W ++ N L+ + M+++DT++YGV+ Y++ V P
Sbjct: 860 LGSKYFALYEVAGVGIQWHTFSQSPVEGDDFNLLLAVTMLMVDTVVYGVLTWYIEAVHPG 919
Query: 489 ENGVRYRWNFIFQNCFRRKKSVIKHHVSSAEVKINKKLS---KEKECAFALDACEPVVEA 545
G+ W F Q + + S +LS +++ CA E E
Sbjct: 920 MYGLPRPWYFPLQKSYWLGSGRTETWEWSWPWAHAPRLSVMEEDQACAMESRHFE---ET 976
Query: 546 ISLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTT 605
++ + + + + KL KVY K A+N L L LYENQ+++ LGHNGAGK+TT
Sbjct: 977 RGMEEEPTHLP-LVVCVDKLTKVY--KNDKKLALNKLSLNLYENQVVSFLGHNGAGKTTT 1033
Query: 606 ISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKG 665
+S+L GL PPT+G A ++G +I +MDEIRK LG+CPQ+++LF +LTV EHL ++ LK
Sbjct: 1034 MSILTGLFPPTSGSATIYGHDIRTEMDEIRKNLGMCPQHNVLFDQLTVEEHLWFYSRLKS 1093
Query: 666 VKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGM 725
+ +E + + +M++++ L++K + +V+ LSGGMKRKLS+ IA +G S+ +ILDEPT+G+
Sbjct: 1094 MAQEEIRKEMDKMIEDLELSNKRHSLVQTLSGGMKRKLSVAIAFVGGSRAIILDEPTAGV 1153
Query: 726 DPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 785
DPY+ R W LI K K GR ILL+TH MDEA+ LGDRIAI+++G LKCCGS LFLK YG
Sbjct: 1154 DPYARRAIWDLILKYKPGRTILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGAYG 1213
Query: 786 VGYTLTLVK--------------SAPDASA---------AADIVYRHIPSALCVSEVGTE 822
GY LTLVK S+P + + +H+ S+L VS+ TE
Sbjct: 1214 DGYRLTLVKRPAEPGTSQEPGMASSPSGRPQLSNCSEMQVSQFIRKHVASSLLVSDTSTE 1273
Query: 823 ITFKLP--LASSSSFESMFREIESCIRKSVSKVEADATEDTDYLGIESFGISVTTLEEVF 880
+++ LP +FE +F+++E + D L + SFG+ TTLEEVF
Sbjct: 1274 LSYILPSEAVKKGAFERLFQQLEHSL---------------DALHLSSFGLMDTTLEEVF 1318
Query: 881 LRVA 884
L+V+
Sbjct: 1319 LKVS 1322
|
Probable transporter, its natural substrate has not been found yet. May have a role in macrophage lipid metabolism and neural development. Rattus norvegicus (taxid: 10116) |
| >sp|P78363|ABCA4_HUMAN Retinal-specific ATP-binding cassette transporter OS=Homo sapiens GN=ABCA4 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust.
Identities = 265/810 (32%), Positives = 406/810 (50%), Gaps = 115/810 (14%)
Query: 263 IRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLYMMGL 322
++ +P+P + DD F I+ R + +L ++Y +S + V EKE +++E L G+
Sbjct: 634 LQQMPYPC--FVDDSFMIILNRCFPIFMVLAWIYSVSMTVKSIVLEKELRLKETLKNQGV 691
Query: 323 KDGIFHLSWFITYAAQFAVSSGIITACTMDS-LFKYSDKTVVFTYFFSFGLSAITLSFFI 381
+ + +WF+ + ++S ++T M + YSD ++F + +F + I L F +
Sbjct: 692 SNAVIWCTWFLDSFSIMSMSIFLLTIFIMHGRILHYSDPFILFLFLLAFSTATIMLCFLL 751
Query: 382 STFFARAKTAVAVGTLSFLGAFFPY---YTVNDEAVPMVLKVIASLLSPTAFALGSVNFA 438
STFF++A A A + + + P+ + D + K + SLLSP AF G+
Sbjct: 752 STFFSKASLAAACSGVIYFTLYLPHILCFAWQDRMTAELKKAV-SLLSPVAFGFGTEYLV 810
Query: 439 DYERAHVGLRWSNMWRASSG---VNFLVCLLMMLLDTLLYGVIGLYLDKVLPKENGVRYR 495
+E +GL+WSN+ + + +FL+ + MMLLD +YG++ YLD+V P + G
Sbjct: 811 RFEEQGLGLQWSNIGNSPTEGDEFSFLLSMQMMLLDAAVYGLLAWYLDQVFPGDYGTPLP 870
Query: 496 WNFIFQNCFRRKKSVIKHHVSSAEVKINKKLSKEKECAFALDACEPVVEAISLDMKQQE- 554
W F+ Q + A K + L++E E D P E I ++E
Sbjct: 871 WYFLLQESYWLGGEGCSTREERALEK-TEPLTEETE-----DPEHP--EGIHDSFFEREH 922
Query: 555 ---VDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVG 611
V G C+ + L K++ + AV+ L +T YENQI A LGHNGAGK+TT+S+L G
Sbjct: 923 PGWVPGVCV--KNLVKIF--EPCGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTG 978
Query: 612 LIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELL 671
L+PPT+G LV G++I +D +R+ LG+CPQ++ILF LTV EH+ +A LKG +E
Sbjct: 979 LLPPTSGTVLVGGRDIETSLDAVRQSLGMCPQHNILFHHLTVAEHMLFYAQLKGKSQEEA 1038
Query: 672 ESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMR 731
+ + M+++ GL K N + LSGGM+RKLS+ IA +GD+KVVILDEPTSG+DPYS R
Sbjct: 1039 QLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVILDEPTSGVDPYSRR 1098
Query: 732 LTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLT 791
W L+ K + GR I+++TH MDEA+ LGDRIAI+A G L C G+ LFLK+ +G G LT
Sbjct: 1099 SIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIIAQGRLYCSGTPLFLKNCFGTGLYLT 1158
Query: 792 LVK-------------------------SAP--------------DASAAADIVYRHIPS 812
LV+ + P D + D+V H+P
Sbjct: 1159 LVRKMKNIQSQRKGSEGTCSCSSKGFSTTCPAHVDDLTPEQVLDGDVNELMDVVLHHVPE 1218
Query: 813 ALCVSEVGTEITFKLPLAS--SSSFESMFREIESCIRKSVSKVEADATEDTDYLGIESFG 870
A V +G E+ F LP + ++ S+FRE+E + AD LG+ SFG
Sbjct: 1219 AKLVECIGQELIFLLPNKNFKHRAYASLFRELEETL--------AD-------LGLSSFG 1263
Query: 871 ISVTTLEEVFLRV----------AGCNLDESECISQRNNLVTLDYVSAESDDQAPKRISN 920
IS T LEE+FL+V AG + E ++ R+ + E Q P+ +
Sbjct: 1264 ISDTPLEEIFLKVTEDSDSGPLFAGGAQQKRENVNPRHPCLG----PREKAGQTPQDSNV 1319
Query: 921 CKLFGNYKWVFGFIVTVVQRACTLIVAAVLGFLNFLIKKCCTCCIISRSMFWQHCKALFI 980
C G + LN + QH +AL +
Sbjct: 1320 CSP--------GAPAAHPEGQPPPEPECPGPQLN-----------TGTQLVLQHVQALLV 1360
Query: 981 KRAVSARRDRKTIVFQLLIPAIFLLVGLLF 1010
KR R K + Q+++PA F+ + L+
Sbjct: 1361 KRFQHTIRSHKDFLAQIVLPATFVFLALML 1390
|
In the visual cycle, acts as an inward-directed retinoid flipase, retinoid substrates imported by ABCA4 from the extracellular or intradiscal (rod) membrane surfaces to the cytoplasmic membrane surface are all-trans-retinaldehyde (ATR) and N-retinyl-phosphatidyl-ethanolamine (NR-PE). Once transported to the cytoplasmic surface, ATR is reduced to vitamin A by trans-retinol dehydrogenase (tRDH) and then transferred to the retinal pigment epithelium (RPE) where it is converted to 11-cis-retinal. May play a role in photoresponse, removing ATR/NR-PE from the extracellular photoreceptor surfaces during bleach recovery. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1833 | ||||||
| 224090097 | 1891 | ABC transporter family, cholesterol/phos | 0.981 | 0.951 | 0.802 | 0.0 | |
| 225441860 | 1881 | PREDICTED: ABC transporter A family memb | 0.976 | 0.951 | 0.792 | 0.0 | |
| 356504779 | 1892 | PREDICTED: ABC transporter A family memb | 0.982 | 0.951 | 0.767 | 0.0 | |
| 79595267 | 1882 | ABC transporter A family member 1 [Arabi | 0.969 | 0.944 | 0.730 | 0.0 | |
| 33350934 | 1882 | ATP-binding cassette transporter AtABCA1 | 0.970 | 0.945 | 0.730 | 0.0 | |
| 297827817 | 1914 | ATPase, coupled to transmembrane movemen | 0.973 | 0.932 | 0.720 | 0.0 | |
| 255577258 | 1722 | abc transporter, putative [Ricinus commu | 0.900 | 0.958 | 0.768 | 0.0 | |
| 79324883 | 1846 | ABC transporter A family member 1 [Arabi | 0.913 | 0.906 | 0.657 | 0.0 | |
| 297739642 | 2001 | unnamed protein product [Vitis vinifera] | 0.697 | 0.638 | 0.767 | 0.0 | |
| 302810659 | 1855 | hypothetical protein SELMODRAFT_446818 [ | 0.935 | 0.923 | 0.536 | 0.0 |
| >gi|224090097|ref|XP_002308937.1| ABC transporter family, cholesterol/phospholipid flippase [Populus trichocarpa] gi|222854913|gb|EEE92460.1| ABC transporter family, cholesterol/phospholipid flippase [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2956 bits (7664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1447/1804 (80%), Positives = 1605/1804 (88%), Gaps = 4/1804 (0%)
Query: 1 MGTAKRHLKAMLRKNWLLKVRHPFVTAAEILLPTVVMLLLIAVRTRVDTRIHPAQPYIRK 60
MG + R L+AMLRKNWLLK+RHPF+T+AEILLPT+VMLLLIAVRTRVD +IHPAQ I++
Sbjct: 1 MGNSTRQLRAMLRKNWLLKIRHPFITSAEILLPTIVMLLLIAVRTRVDLQIHPAQACIKE 60
Query: 61 DMFVEIGKGVSPNFVQALELMLAKGEYLAFAPDTEETRTMINLMSIKFPKLKLVSRIYKD 120
+M VE+GKG+SPNF + LE +L +GE+LAFAPDTEETR MINLMSIKFP L+ VS IYKD
Sbjct: 61 NMLVEVGKGMSPNFQEVLEALLVRGEFLAFAPDTEETRMMINLMSIKFPLLQQVSLIYKD 120
Query: 121 ELELETYIRSDLYGTCSQVKDCLNPKIKGAVVFHDQGPELFDYSIRLNHTWAFSGFPDVK 180
ELELETY+ SDLYGTCSQVK+C NPKIKGAVVFH+QGP+LFDYSIRLNHTWAFSGFPDV+
Sbjct: 121 ELELETYLTSDLYGTCSQVKNCSNPKIKGAVVFHNQGPQLFDYSIRLNHTWAFSGFPDVR 180
Query: 181 TIMDTNGPYLNDLELGVNIIPTMQYSFSGFLTLQQVLDSFIIFAAQQTGANVATENVEIP 240
TIMD NGPYLNDLELGVNIIPTMQYS S F TLQQV+DSFIIFA+QQT +TE++E+P
Sbjct: 181 TIMDVNGPYLNDLELGVNIIPTMQYSSSAFFTLQQVVDSFIIFASQQTETESSTEHIELP 240
Query: 241 PSNLSGTHLSLKQPWTLYSPSNIRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISR 300
SN SLK PWT +SPS IR+ PFPTREYTDD+FQSIIKRVMGVLYLLGFLYPIS
Sbjct: 241 SSNSFNKSSSLKLPWTKFSPSKIRIAPFPTREYTDDQFQSIIKRVMGVLYLLGFLYPISG 300
Query: 301 LISYSVFEKEQKIREGLYMMGLKDGIFHLSWFITYAAQFAVSSGIITACTMDSLFKYSDK 360
LISYSVFEKEQKIREGLYMMGLKDGIFHLSWFITYA QFA+SSGIITACT+++LFKYSDK
Sbjct: 301 LISYSVFEKEQKIREGLYMMGLKDGIFHLSWFITYALQFAISSGIITACTLNNLFKYSDK 360
Query: 361 TVVFTYFFSFGLSAITLSFFISTFFARAKTAVAVGTLSFLGAFFPYYTVNDEAVPMVLKV 420
+VVF YFFSFGLSAI LSF ISTFF RAKTAVAVGTLSF GAFFPYYTVND AVPM+LKV
Sbjct: 361 SVVFVYFFSFGLSAIMLSFLISTFFTRAKTAVAVGTLSFFGAFFPYYTVNDPAVPMILKV 420
Query: 421 IASLLSPTAFALGSVNFADYERAHVGLRWSNMWRASSGVNFLVCLLMMLLDTLLYGVIGL 480
+ASLLSPTAFALGS+NFADYERAHVGLRWSN+WR SSGVNFLVCLLMML DTL+Y IGL
Sbjct: 421 LASLLSPTAFALGSINFADYERAHVGLRWSNIWRESSGVNFLVCLLMMLFDTLIYCAIGL 480
Query: 481 YLDKVLPKENGVRYRWNFIFQNCFRRKKSVIKHHVSSAEVKINKKLSKEKECAFALDACE 540
YLDKVLP+ENG+RY WNF+FQ CF RK + +KHH SS E N +LS E+ + E
Sbjct: 481 YLDKVLPRENGMRYPWNFLFQKCFWRKNNFVKHHGSSLESNFNDELSNERASFLGNNTQE 540
Query: 541 PVVEAISLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGA 600
P VEAISLDMKQQE+D RCIQIR L KVYA+KRGNCCAVNSLQLTLYENQILALLGHNGA
Sbjct: 541 PAVEAISLDMKQQELDKRCIQIRNLRKVYASKRGNCCAVNSLQLTLYENQILALLGHNGA 600
Query: 601 GKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMF 660
GKSTTISMLVGL+PPT+GDALVFGKNIT DMDEIR GLGVCPQ DILFPELTVREHLE+F
Sbjct: 601 GKSTTISMLVGLLPPTSGDALVFGKNITTDMDEIRNGLGVCPQNDILFPELTVREHLEIF 660
Query: 661 AVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDE 720
A LKGVKE++LE V +MV+EVGLADKVN VRALSGGMKRKLSLGIALIG+SKVVILDE
Sbjct: 661 AALKGVKEDILERDVTDMVNEVGLADKVNTAVRALSGGMKRKLSLGIALIGNSKVVILDE 720
Query: 721 PTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFL 780
PTSGMDPYSMRLTWQLIK+IKKGRIILLTTHSMDEA+ELGDRIAIMANGSLKCCGSSLFL
Sbjct: 721 PTSGMDPYSMRLTWQLIKRIKKGRIILLTTHSMDEADELGDRIAIMANGSLKCCGSSLFL 780
Query: 781 KHQYGVGYTLTLVKSAPDASAAADIVYRHIPSALCVSEVGTEITFKLPLASSSSFESMFR 840
KHQYGVGYTLTLVKS+P AS A+DIVYRH+PSA CVSEVGTEI+FKLPLASS SFESMFR
Sbjct: 781 KHQYGVGYTLTLVKSSPTASVASDIVYRHVPSATCVSEVGTEISFKLPLASSVSFESMFR 840
Query: 841 EIESCIRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFLRVAGCNLDESECISQRNNL 900
EIESC+R+S+SK E ++ED Y GIES+GISVTTLEEVFLRVAGC DE++ RNN+
Sbjct: 841 EIESCMRRSISKSEMSSSEDKSYPGIESYGISVTTLEEVFLRVAGCGYDETDDFVDRNNI 900
Query: 901 VTLD-YVSAESDDQAPKRISNCKLFGNYKWVFGFIVTVVQRACTLIVAAVLGFLNFLIKK 959
++ + V A D++ + I + K+ GNYK + GFI +V R L+ A +L F+NFL +
Sbjct: 901 LSSNSTVPAAYDNRPSETIFDAKILGNYKKIIGFISAMVGRVSGLMAATILSFINFLGMQ 960
Query: 960 CCTCCIISRSMFWQHCKALFIKRAVSARRDRKTIVFQLLIPAIFLLVGLLFLKLKPHPDM 1019
CC+CCIISRS FWQH KALFIKRA+SARRDRKTIVFQLLIPAIFLL GLLFLKLK HPD
Sbjct: 961 CCSCCIISRSTFWQHTKALFIKRAISARRDRKTIVFQLLIPAIFLLFGLLFLKLKSHPDQ 1020
Query: 1020 LSVTFTTSNFNPLLSGGGGGGPIPFDLSWPIANEVSKYIQGGWIQRFKQSSYRFPNAEKA 1079
SVT TTS+FNPLLSGGGGGGPIPFDLS PIA EV+ YI+GGWIQ F+QS+YRFP+AE+
Sbjct: 1021 QSVTLTTSHFNPLLSGGGGGGPIPFDLSLPIAKEVAGYIKGGWIQNFRQSAYRFPDAERE 1080
Query: 1080 LADAVDAAGPTLGPVLLSMSEYLMSSFNESYQSRYGAIVMDDQNDDGSLGFTVLHNSSCQ 1139
LADA+ AAGPTLGPVLLSMSE+LMSSFNESYQSRYGA+VMD ++DDGSLG+T+LHNSSCQ
Sbjct: 1081 LADAIKAAGPTLGPVLLSMSEFLMSSFNESYQSRYGAVVMDKKHDDGSLGYTILHNSSCQ 1140
Query: 1140 HAGPTFINVMNTAILRLATGNRNMTIRTRNHPLPTTQSQQLQRHDLDAFSVSIIISIAFS 1199
HA PTFIN+MN AILRLATG++NMTI+TRNHPLP T+SQ LQ HDLDAFS +II++IAFS
Sbjct: 1141 HAAPTFINLMNAAILRLATGDQNMTIQTRNHPLPMTKSQHLQHHDLDAFSAAIIVNIAFS 1200
Query: 1200 FIPASFAVAIVKEREVKAKQQQLISGVSVLSYWTSTYIWDFISFLFPSSCAIILFYIFGL 1259
FIPASFAVAIVKEREVKAK QQLISGVSVLSYW STYIWDFISFL PSS A++LFYIFGL
Sbjct: 1201 FIPASFAVAIVKEREVKAKHQQLISGVSVLSYWVSTYIWDFISFLIPSSFALLLFYIFGL 1260
Query: 1260 DQFVGRGCLLPTVLIFLGYGLAIASSTYCLTFFFSDHTMAQNVVLLVHFFTGLILMVISF 1319
DQF+G+ C LPT L+FL YGLAIASSTYCLTF FS+H+MAQNVVLLVHFFTGLILMVISF
Sbjct: 1261 DQFIGKDCFLPTFLMFLEYGLAIASSTYCLTFCFSEHSMAQNVVLLVHFFTGLILMVISF 1320
Query: 1320 IMGLLEATRSANSLLKNFFRLSPGFCFADGLASLALLRQGMKDKTSDGVFDWNVTSASIC 1379
IMGL++ T SAN+LLKNFFRLSPGFCFADGLASLALLRQGMKDK+S+ VFDWNVT AS+C
Sbjct: 1321 IMGLIQTTASANNLLKNFFRLSPGFCFADGLASLALLRQGMKDKSSNAVFDWNVTGASLC 1380
Query: 1380 YLGCESICYFLLTLGLELLPSHKWTLMTIKEWWKGTRHRLCNTPSSYLEPLLQSSSESDT 1439
YLG ESI YFLLTLG ELLP HK T + IK++W+ + +T LEPLL+S SE+
Sbjct: 1381 YLGFESIGYFLLTLGWELLPFHKLTPVGIKQYWRSIMNLQHDTHD--LEPLLKSPSETVD 1438
Query: 1440 LDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECF 1499
L+ +EDIDVQ ERNRVL+GS+DNAIIYLRNLRKVYPG K KVAV SLTFSVQAGECF
Sbjct: 1439 LNFDEDIDVQTERNRVLAGSIDNAIIYLRNLRKVYPGEKHR-TKVAVRSLTFSVQAGECF 1497
Query: 1500 GFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLT 1559
GFLGTNGAGKTTTLSM++GEE PTDG+AFIFGKD RSDPKAARR IGYCPQFDALLE+LT
Sbjct: 1498 GFLGTNGAGKTTTLSMLTGEESPTDGSAFIFGKDTRSDPKAARRHIGYCPQFDALLEFLT 1557
Query: 1560 VQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1619
VQEHLELYARIKGVA+YR+DDVVMEKL+EFDLLKHA KPSFTLSGGNKRKLSVAIAMIGD
Sbjct: 1558 VQEHLELYARIKGVADYRIDDVVMEKLLEFDLLKHANKPSFTLSGGNKRKLSVAIAMIGD 1617
Query: 1620 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGG 1679
PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGG
Sbjct: 1618 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGG 1677
Query: 1680 QLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDDLEV 1739
+LRCIGSPQHLKTRFGN LELEVKPTEVSSVDLE+LCQ IQ R+FDIPS RSLLDD+EV
Sbjct: 1678 RLRCIGSPQHLKTRFGNHLELEVKPTEVSSVDLENLCQTIQSRLFDIPSHPRSLLDDIEV 1737
Query: 1740 CIGGIDSISSENATAAEISLSQEMLLIVGRWLGNEERIKTLISSSSSPDRIFGEQLSEQL 1799
CIG IDSI+SENA+ EISLSQEM++++GRWLGNEER+KTL+SS+ D +FGEQLSEQL
Sbjct: 1738 CIGRIDSITSENASVMEISLSQEMIILIGRWLGNEERVKTLVSSTPISDGVFGEQLSEQL 1797
Query: 1800 VRDG 1803
VRDG
Sbjct: 1798 VRDG 1801
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225441860|ref|XP_002284204.1| PREDICTED: ABC transporter A family member 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2818 bits (7304), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1431/1805 (79%), Positives = 1588/1805 (87%), Gaps = 15/1805 (0%)
Query: 1 MGTAKRHLKAMLRKNWLLKVRHPFVTAAEILLPTVVMLLLIAVRTRVDTRIHPAQPYIRK 60
MG + L+AMLRKNWLLK+RHPFVT AEILLPTVVML+LIAVRT+VDT++H AQPY+RK
Sbjct: 1 MGRQRAQLRAMLRKNWLLKIRHPFVTCAEILLPTVVMLMLIAVRTQVDTKVHSAQPYVRK 60
Query: 61 DMFVEIGKG-VSPNFVQALELMLAKGEYLAFAPDTEETRTMINLMSIKFPKLKLVSRIYK 119
MFVE+GKG VSP+F Q LEL+LAKGEYLAFAPDT+ETR MINLMSIKFP LKLV+R+YK
Sbjct: 61 GMFVEVGKGDVSPSFGQVLELLLAKGEYLAFAPDTKETRMMINLMSIKFPLLKLVTRVYK 120
Query: 120 DELELETYIRSDLYGTCSQVKDCLNPKIKGAVVFHDQGPELFDYSIRLNHTWAFSGFPDV 179
DELEL+TYIRSDLYGTC+QVK+C NPKIKGAVVFHDQGP +FDYSIRLNH+WAFSGFPDV
Sbjct: 121 DELELDTYIRSDLYGTCNQVKNCSNPKIKGAVVFHDQGPLVFDYSIRLNHSWAFSGFPDV 180
Query: 180 KTIMDTNGPYLNDLELGVNIIPTMQYSFSGFLTLQQVLDSFIIFAAQQTGANVATENVEI 239
KTIMDTNGPYLNDLELGV+ +PT+QYSFSGFLTLQQVLDSFIIFAAQQ AN+ EN+E+
Sbjct: 181 KTIMDTNGPYLNDLELGVDAVPTLQYSFSGFLTLQQVLDSFIIFAAQQNEANMVNENIEL 240
Query: 240 PPSNLSGTHLSLKQPWTLYSPSNIRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPIS 299
P S T L +KQ W + PSNI++VPFPTREYTDDEFQSIIK VMG+LYLLGFLYPIS
Sbjct: 241 P----SNTSL-IKQSWMQFIPSNIKIVPFPTREYTDDEFQSIIKSVMGLLYLLGFLYPIS 295
Query: 300 RLISYSVFEKEQKIREGLYMMGLKDGIFHLSWFITYAAQFAVSSGIITACTMDSLFKYSD 359
RLISYSVFEKEQKI+E LYMMGLKD IFHLSWFITYA QFAV+SGIITACTMD+LF+YSD
Sbjct: 296 RLISYSVFEKEQKIKESLYMMGLKDEIFHLSWFITYALQFAVTSGIITACTMDTLFQYSD 355
Query: 360 KTVVFTYFFSFGLSAITLSFFISTFFARAKTAVAVGTLSFLGAFFPYYTVNDEAVPMVLK 419
K++VF YFF FGLSAI LSF ISTFF RAKTAVAVGTLSFLGAFFPYYTVND+AVPM+LK
Sbjct: 356 KSLVFIYFFLFGLSAIMLSFLISTFFTRAKTAVAVGTLSFLGAFFPYYTVNDQAVPMILK 415
Query: 420 VIASLLSPTAFALGSVNFADYERAHVGLRWSNMWRASSGVNFLVCLLMMLLDTLLYGVIG 479
IASLLSPTAFALGS+NFADYERA+VGLRWSN+WRASSGVNFL CLLMMLLD LLY IG
Sbjct: 416 FIASLLSPTAFALGSINFADYERAYVGLRWSNVWRASSGVNFLACLLMMLLDALLYCAIG 475
Query: 480 LYLDKVLPKENGVRYRWNFIFQNCFRRKKSVIKHHVSSAEVKINKKLSKEKECAFALDAC 539
LYLDKVLP+ENGVR WNF F C RK+S IKH S + K +++ K C+ D
Sbjct: 476 LYLDKVLPRENGVRSPWNFPFLKCSWRKRSSIKHEDCSFDFKNDRR--KVNFCSN--DIS 531
Query: 540 EPVVEAISLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNG 599
P VEAISLDMKQQE+DGRCIQIR LHKVYATK+GNCCAVNSL+LTLYENQILALLGHNG
Sbjct: 532 GPAVEAISLDMKQQELDGRCIQIRNLHKVYATKKGNCCAVNSLRLTLYENQILALLGHNG 591
Query: 600 AGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEM 659
AGKSTTISMLVGL+PPT+GDALVFGKNI +MDEIRK LGVCPQ DILFPELTV+EHLE+
Sbjct: 592 AGKSTTISMLVGLLPPTSGDALVFGKNIITEMDEIRKQLGVCPQNDILFPELTVKEHLEI 651
Query: 660 FAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 719
FA+LKGV E LES V EMVDEVGLADKVN VV ALSGGMKRKLSLGIALIG+SKV++LD
Sbjct: 652 FAILKGVTENFLESAVTEMVDEVGLADKVNTVVGALSGGMKRKLSLGIALIGNSKVIVLD 711
Query: 720 EPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLF 779
EPTSGMDPYSMRLTWQLIK+IKKGRIILLTTHSMDEA+ LGDRIAIMANGSLKCCGSSLF
Sbjct: 712 EPTSGMDPYSMRLTWQLIKRIKKGRIILLTTHSMDEADVLGDRIAIMANGSLKCCGSSLF 771
Query: 780 LKHQYGVGYTLTLVKSAPDASAAADIVYRHIPSALCVSEVGTEITFKLPLASSSSFESMF 839
LKHQYGVGYTLTLVKSAP AS AADIVYRH+PSA CVSEVGTEI+FKLPL+SSSSFESMF
Sbjct: 772 LKHQYGVGYTLTLVKSAPSASIAADIVYRHVPSATCVSEVGTEISFKLPLSSSSSFESMF 831
Query: 840 REIESCIRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFLRVAGCNLDESECISQRNN 899
REIESC+ SV + ED LGIES+GISVTTLEEVFLRVAGC+ DE+EC Q
Sbjct: 832 REIESCM-NSVHNSDRSGNEDKYNLGIESYGISVTTLEEVFLRVAGCDFDETECSKQEKL 890
Query: 900 LVTLD-YVSAESDDQAPKRISNCKLFGNYKWVFGFIVTVVQRACTLIVAAVLGFLNFLIK 958
V D VS S + APK+I + K G YK + G + T+V+RAC+LI AAVL F+NF
Sbjct: 891 HVLPDSVVSQASPNHAPKQIFHSKPLGKYK-IIGVVSTIVERACSLIFAAVLSFINFFSV 949
Query: 959 KCCTCCIISRSMFWQHCKALFIKRAVSARRDRKTIVFQLLIPAIFLLVGLLFLKLKPHPD 1018
+CC+CC IS+S+FW+H KAL IKRA+ ARRDRKTIVFQLLIPA+FLL GLL LKLKPHPD
Sbjct: 950 QCCSCCFISKSIFWEHSKALLIKRAIIARRDRKTIVFQLLIPAVFLLFGLLLLKLKPHPD 1009
Query: 1019 MLSVTFTTSNFNPLLSGGGGGGPIPFDLSWPIANEVSKYIQGGWIQRFKQSSYRFPNAEK 1078
SVTFTTS+FNPLL GGGGGGPIPFDLSWPIA EV+ Y++GGWIQRFK ++YRFP+ +K
Sbjct: 1010 QQSVTFTTSHFNPLLRGGGGGGPIPFDLSWPIAKEVAWYVEGGWIQRFKPTTYRFPDPDK 1069
Query: 1079 ALADAVDAAGPTLGPVLLSMSEYLMSSFNESYQSRYGAIVMDDQNDDGSLGFTVLHNSSC 1138
ALADA++AAGPTLGP LLSMSE+LMSSFNESYQSRYGA+VMDDQN DGSLG+TVLHN SC
Sbjct: 1070 ALADAIEAAGPTLGPTLLSMSEFLMSSFNESYQSRYGAVVMDDQNKDGSLGYTVLHNGSC 1129
Query: 1139 QHAGPTFINVMNTAILRLATGNRNMTIRTRNHPLPTTQSQQLQRHDLDAFSVSIIISIAF 1198
QHA PTFIN+MN AILR AT N+NMTI+TRNHPLP T+SQ LQRHDLDAFS ++I++IA
Sbjct: 1130 QHAAPTFINLMNAAILRFATLNKNMTIQTRNHPLPMTKSQHLQRHDLDAFSAAVIVNIAL 1189
Query: 1199 SFIPASFAVAIVKEREVKAKQQQLISGVSVLSYWTSTYIWDFISFLFPSSCAIILFYIFG 1258
SF+PASFAV+IVKEREVKAK QQLISGVSVLSYW STY+WDF+SFL PSS AI LFYIFG
Sbjct: 1190 SFVPASFAVSIVKEREVKAKHQQLISGVSVLSYWASTYLWDFVSFLLPSSFAITLFYIFG 1249
Query: 1259 LDQFVGRGCLLPTVLIFLGYGLAIASSTYCLTFFFSDHTMAQNVVLLVHFFTGLILMVIS 1318
+DQF+G+G PTVL+FL YGLAIASSTYCLTF FSDHTMAQNVVLL+HFFTGL+LMVIS
Sbjct: 1250 MDQFIGKGRFFPTVLMFLEYGLAIASSTYCLTFSFSDHTMAQNVVLLLHFFTGLVLMVIS 1309
Query: 1319 FIMGLLEATRSANSLLKNFFRLSPGFCFADGLASLALLRQGMKDKTSDGVFDWNVTSASI 1378
FIMGL++ T S NS+LKNFFRLSPGFCFADGLASLALLRQGMK +SDGV DWNVT ASI
Sbjct: 1310 FIMGLIQTTESTNSVLKNFFRLSPGFCFADGLASLALLRQGMKGGSSDGVLDWNVTGASI 1369
Query: 1379 CYLGCESICYFLLTLGLELLPSHKWTLMTIKEWWKGTRHRLCNTPSSYLEPLLQSSSESD 1438
CYLG ESI +FLLTLGLELLP K++L TI E W+ ++ T SSYLEPLL+S+SE+
Sbjct: 1370 CYLGVESIGFFLLTLGLELLPPRKFSLFTILEPWRAIKNSWHGT-SSYLEPLLESTSETA 1428
Query: 1439 TLDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGEC 1498
++DL+EDIDVQ ERNRVLSGS DNAIIYLRNLRKVYPGGK K+AVHSLTFSV GEC
Sbjct: 1429 SIDLDEDIDVQTERNRVLSGSADNAIIYLRNLRKVYPGGKHLSPKIAVHSLTFSVHEGEC 1488
Query: 1499 FGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYL 1558
FGFLGTNGAGKTTTLSM++GEE PTDGTAFIFGKD+ S+PKAARR IGYCPQFDALLEYL
Sbjct: 1489 FGFLGTNGAGKTTTLSMLTGEECPTDGTAFIFGKDVCSNPKAARRHIGYCPQFDALLEYL 1548
Query: 1559 TVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIG 1618
TVQEHLELYARIKGV YRM DVVMEKLVEFDLL+HA KPSF+LSGGNKRKLSVAIAM+G
Sbjct: 1549 TVQEHLELYARIKGVPGYRMQDVVMEKLVEFDLLRHANKPSFSLSGGNKRKLSVAIAMVG 1608
Query: 1619 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVG 1678
DPPIVILDEPSTGMDPIAKRFMWEVISRLSTR+GKTAVILTTHSM EAQALCTRIGIMVG
Sbjct: 1609 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRRGKTAVILTTHSMAEAQALCTRIGIMVG 1668
Query: 1679 GQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDDLE 1738
G+LRCIGS QHLKTRFGN LELEVKPTEVS VDLE+LC+ IQER+F IP RS+L DLE
Sbjct: 1669 GRLRCIGSSQHLKTRFGNHLELEVKPTEVSHVDLENLCRFIQERLFHIP-HPRSILSDLE 1727
Query: 1739 VCIGGIDSISSENATAAEISLSQEMLLIVGRWLGNEERIKTLISSSSSPDRIFGEQLSEQ 1798
VCIG +DSI+SENA+ AEISLS EM++++GRWLGNEERI TL+SS+ D +FGEQLSEQ
Sbjct: 1728 VCIGAVDSITSENASVAEISLSPEMIVMIGRWLGNEERISTLVSSTPVSDGVFGEQLSEQ 1787
Query: 1799 LVRDG 1803
L RDG
Sbjct: 1788 LFRDG 1792
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356504779|ref|XP_003521172.1| PREDICTED: ABC transporter A family member 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2815 bits (7297), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1384/1804 (76%), Positives = 1574/1804 (87%), Gaps = 3/1804 (0%)
Query: 1 MGTAKRHLKAMLRKNWLLKVRHPFVTAAEILLPTVVMLLLIAVRTRVDTRIHPAQPYIRK 60
MG A R LK MLRKNWLLK+RHPFVTAAEILLPT+V+LLL+AVRT+VDT+IHP QP+I+K
Sbjct: 1 MGAAWRQLKVMLRKNWLLKIRHPFVTAAEILLPTIVLLLLVAVRTKVDTQIHPVQPHIQK 60
Query: 61 DMFVEIGKGVSPNFVQALELMLAKGEYLAFAPDTEETRTMINLMSIKFPKLKLVSRIYKD 120
DMFVE+G G+SPNF Q L+ +L +GEYLAFAPDT ET+ +I+++SIKFP LKLVSR+YKD
Sbjct: 61 DMFVEVGNGISPNFQQVLQSLLDRGEYLAFAPDTNETKLLIDVVSIKFPLLKLVSRVYKD 120
Query: 121 ELELETYIRSDLYGTCSQVKDCLNPKIKGAVVFHDQGPELFDYSIRLNHTWAFSGFPDVK 180
E+ELETYIRSD YGTC+Q ++C NPKIKGAVVF++QGP+ FDYSIRLNHTWAFSGFPDV
Sbjct: 121 EVELETYIRSDAYGTCNQARNCSNPKIKGAVVFYEQGPQSFDYSIRLNHTWAFSGFPDVT 180
Query: 181 TIMDTNGPYLNDLELGVNIIPTMQYSFSGFLTLQQVLDSFIIFAAQQTGANVATENVEIP 240
TIMDTNGP+LNDLELGV+ +PTMQYSFSGFLTLQQ++DSFII AQQ+ N EN+E+P
Sbjct: 181 TIMDTNGPFLNDLELGVSAVPTMQYSFSGFLTLQQMVDSFIILIAQQSDFNFNAENLELP 240
Query: 241 PSNLSGTHLSLKQPWTLYSPSNIRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISR 300
+ SLK PWT ++P+ IR+ PFPTREYTDD+FQSIIKRVMG+LYLLGFLYPISR
Sbjct: 241 LPGFYDNNFSLKNPWTQFNPARIRIAPFPTREYTDDQFQSIIKRVMGILYLLGFLYPISR 300
Query: 301 LISYSVFEKEQKIREGLYMMGLKDGIFHLSWFITYAAQFAVSSGIITACTMDSLFKYSDK 360
LISYSV+EKEQKI+EGLYMMGL DGIFHLSWFITYA QFA+SSGI+TACTMD+LFKYSDK
Sbjct: 301 LISYSVYEKEQKIKEGLYMMGLNDGIFHLSWFITYALQFAISSGILTACTMDNLFKYSDK 360
Query: 361 TVVFTYFFSFGLSAITLSFFISTFFARAKTAVAVGTLSFLGAFFPYYTVNDEAVPMVLKV 420
T+VF YFF FGLSAI LSFFISTFF RAKTAVAVGTL+FLGAFFPYYTVN+E V ++LKV
Sbjct: 361 TLVFAYFFVFGLSAIMLSFFISTFFKRAKTAVAVGTLAFLGAFFPYYTVNEEGVSIILKV 420
Query: 421 IASLLSPTAFALGSVNFADYERAHVGLRWSNMWRASSGVNFLVCLLMMLLDTLLYGVIGL 480
IASLLSPTAFALGS+NFADYERAHVGLRWSN+WR SSGVNFL CLLMM+LDTLLY GL
Sbjct: 421 IASLLSPTAFALGSINFADYERAHVGLRWSNIWRESSGVNFLACLLMMILDTLLYCATGL 480
Query: 481 YLDKVLPKENGVRYRWNFIFQNCFRRKKSVIKHHVSSAEVKINKKLSKEKECAFALDACE 540
Y DKVLP+E G+RY W+FIFQ F RKK ++KH S +V+I+ K S+ + +
Sbjct: 481 YFDKVLPREYGLRYPWSFIFQKDFWRKKKILKHCSSGFKVEISDKNSESEGNLSGEYTSK 540
Query: 541 PVVEAISLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGA 600
+EAISL+MKQQE+DGRCIQIR LHKVYATK+G+CCAVNSLQLTLYENQILALLGHNGA
Sbjct: 541 SGIEAISLEMKQQELDGRCIQIRNLHKVYATKKGDCCAVNSLQLTLYENQILALLGHNGA 600
Query: 601 GKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMF 660
GKSTTISMLVGL+PPT+GDALVFGKNI +D+DEIRK LGVCPQ+DILFPELTVREHLE+F
Sbjct: 601 GKSTTISMLVGLLPPTSGDALVFGKNIVSDIDEIRKVLGVCPQHDILFPELTVREHLELF 660
Query: 661 AVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDE 720
A LKGV+E L++ V M DEVGLADK+N +VR LSGGMKRKLSLGIALIG SKV++LDE
Sbjct: 661 ATLKGVEEHSLDNAVINMADEVGLADKINSIVRTLSGGMKRKLSLGIALIGSSKVIVLDE 720
Query: 721 PTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFL 780
PTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEA+ELGDRIAIMANGSLKCCGSSLFL
Sbjct: 721 PTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEADELGDRIAIMANGSLKCCGSSLFL 780
Query: 781 KHQYGVGYTLTLVKSAPDASAAADIVYRHIPSALCVSEVGTEITFKLPLASSSSFESMFR 840
KH YGVGYTLTLVKSAP AS A DIVYRH+PSA CVSEVGTEI+F+LP+ASSS+FE MFR
Sbjct: 781 KHHYGVGYTLTLVKSAPTASIAGDIVYRHVPSATCVSEVGTEISFRLPMASSSAFERMFR 840
Query: 841 EIESCIRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFLRVAGCNLDESECISQRNNL 900
EIE C++K+VS +E D D LGIES+GISVTTLEEVFLRVAGC+ DE EC + N+
Sbjct: 841 EIEGCMKKTVSNMELSGNGDKDSLGIESYGISVTTLEEVFLRVAGCDYDEVECFVENNHT 900
Query: 901 VTLDYVSA-ESDDQAPKRISNCKLFGNYKWVFGFIVTVVQRACTLIVAAVLGFLNFLIKK 959
D V++ ++D +IS K FGNYK +FGF+ T++ RAC LI A V+ F+NFL +
Sbjct: 901 HKSDSVASLPTNDHPSTKISCLKFFGNYKKIFGFMTTMLGRACGLIFATVISFINFLGMQ 960
Query: 960 CCTCCIISRSMFWQHCKALFIKRAVSARRDRKTIVFQLLIPAIFLLVGLLFLKLKPHPDM 1019
CC+CC I+RS FWQH KALFIKRA+SARRD KTI+FQL+IP +FL +GLLFLKLKPHPD
Sbjct: 961 CCSCCFITRSTFWQHSKALFIKRAISARRDHKTIIFQLMIPTLFLFIGLLFLKLKPHPDQ 1020
Query: 1020 LSVTFTTSNFNPLLSGGGGGGPIPFDLSWPIANEVSKYIQGGWIQRFKQSSYRFPNAEKA 1079
S+T +TS+FNPLLSGGGGGGPIPF+LS PIA +V++ + GGWIQRFK SSYRFPN+EKA
Sbjct: 1021 QSLTLSTSHFNPLLSGGGGGGPIPFNLSLPIAEKVAQNVIGGWIQRFKPSSYRFPNSEKA 1080
Query: 1080 LADAVDAAGPTLGPVLLSMSEYLMSSFNESYQSRYGAIVMDDQNDDGSLGFTVLHNSSCQ 1139
LADAV+AAGPTLGP LLSMSEYLMSSFNESYQSRYGAIVMDDQN+DGSLG+TVLHN SCQ
Sbjct: 1081 LADAVEAAGPTLGPALLSMSEYLMSSFNESYQSRYGAIVMDDQNNDGSLGYTVLHNCSCQ 1140
Query: 1140 HAGPTFINVMNTAILRLATGNRNMTIRTRNHPLPTTQSQQLQRHDLDAFSVSIIISIAFS 1199
HA PTFIN+MN+AILRLAT + NMTI+TRNHPLPTTQSQ+LQRHDLDAFS ++I++IAFS
Sbjct: 1141 HAAPTFINLMNSAILRLATHDTNMTIQTRNHPLPTTQSQRLQRHDLDAFSAAVIVNIAFS 1200
Query: 1200 FIPASFAVAIVKEREVKAKQQQLISGVSVLSYWTSTYIWDFISFLFPSSCAIILFYIFGL 1259
FIPASFAV+IVKEREVKAKQQQLISGVSVLSYW ST+IWDF+SFLFP+S AI+LFY+FGL
Sbjct: 1201 FIPASFAVSIVKEREVKAKQQQLISGVSVLSYWASTFIWDFVSFLFPASFAIVLFYVFGL 1260
Query: 1260 DQFVGRGCLLPTVLIFLGYGLAIASSTYCLTFFFSDHTMAQNVVLLVHFFTGLILMVISF 1319
DQFVG LLPT+L+ L YGLAIASSTYCLTFFF DHTMAQNVVLL+HFF+GLILMVISF
Sbjct: 1261 DQFVGGVSLLPTILMLLEYGLAIASSTYCLTFFFFDHTMAQNVVLLIHFFSGLILMVISF 1320
Query: 1320 IMGLLEATRSANSLLKNFFRLSPGFCFADGLASLALLRQGMKDKTSDGVFDWNVTSASIC 1379
IMGL+ +T SANS LKNFFR+SPGFCFADGLASLALLRQGMKDKTSDGVFDWNVT ASIC
Sbjct: 1321 IMGLMPSTMSANSFLKNFFRISPGFCFADGLASLALLRQGMKDKTSDGVFDWNVTGASIC 1380
Query: 1380 YLGCESICYFLLTLGLELLPSHKWTLMTIKEWWKGTRHRLCNTPSSYLEPLLQSSSESDT 1439
YL ES YFLLTL LE+ PS T IK+WW N P YLEPLL+SSSE+
Sbjct: 1381 YLAVESFSYFLLTLALEMFPSLNLTSFMIKKWWGKINIFQHNNP--YLEPLLESSSETVA 1438
Query: 1440 LDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECF 1499
+D +ED+DV+ ERNRVLSGS+DN+IIYLRNLRKVY K KVAV SLTFSVQ GECF
Sbjct: 1439 MDFDEDVDVKTERNRVLSGSLDNSIIYLRNLRKVYFEEKHHGRKVAVDSLTFSVQEGECF 1498
Query: 1500 GFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLT 1559
GFLGTNGAGKTTT+SM+ GEE P+DGTAFIFGKDI S PKAARR IGYCPQFDALLE+LT
Sbjct: 1499 GFLGTNGAGKTTTISMLCGEECPSDGTAFIFGKDICSHPKAARRYIGYCPQFDALLEFLT 1558
Query: 1560 VQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1619
V+EHLELYARIKGV ++ +D+VVMEKL EFDLLKHA KPSF+LSGGNKRKLSVAIAMIGD
Sbjct: 1559 VREHLELYARIKGVPDFAIDNVVMEKLTEFDLLKHANKPSFSLSGGNKRKLSVAIAMIGD 1618
Query: 1620 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGG 1679
PPIVILDEPSTGMDPIAKRFMW+VISR+STR+GKTAVILTTHSMNEAQALCTRIGIMVGG
Sbjct: 1619 PPIVILDEPSTGMDPIAKRFMWDVISRISTRRGKTAVILTTHSMNEAQALCTRIGIMVGG 1678
Query: 1680 QLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDDLEV 1739
+LRCIGSPQHLKTRFGN LELEVKPTEVSS DL++LCQ IQER+ D+PS RSLL+DLE+
Sbjct: 1679 RLRCIGSPQHLKTRFGNHLELEVKPTEVSSADLQNLCQAIQERLLDVPSHPRSLLNDLEI 1738
Query: 1740 CIGGIDSISSENATAAEISLSQEMLLIVGRWLGNEERIKTLISSSSSPDRIFGEQLSEQL 1799
CIGG DS++S N + AEISL++EM+ ++GRWL NEER+KTLIS + D EQLSEQL
Sbjct: 1739 CIGGTDSVTSGNTSIAEISLTREMIGLIGRWLDNEERVKTLISGTPVCDGASQEQLSEQL 1798
Query: 1800 VRDG 1803
RDG
Sbjct: 1799 FRDG 1802
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|79595267|ref|NP_850354.2| ABC transporter A family member 1 [Arabidopsis thaliana] gi|75327922|sp|Q84M24.2|AB1A_ARATH RecName: Full=ABC transporter A family member 1; Short=ABC transporter ABCA.1; Short=AtABCA1; AltName: Full=ABC one homolog protein 1; Short=AtAOH1 gi|45504175|dbj|BAC75958.2| AtABCA1 [Arabidopsis thaliana] gi|330254923|gb|AEC10017.1| ABC transporter A family member 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2688 bits (6968), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1328/1817 (73%), Positives = 1546/1817 (85%), Gaps = 40/1817 (2%)
Query: 1 MGTAKRHLKAMLRKNWLLKVRHPFVTAAEILLPTVVMLLLIAVRTRVDTRIHPAQPYIRK 60
MG++KR KAMLRKNWLLK RHPFVT+AEILLPT+VMLLLIAVRTRVDT IHPA I K
Sbjct: 1 MGSSKRQFKAMLRKNWLLKTRHPFVTSAEILLPTIVMLLLIAVRTRVDTTIHPAHSNIDK 60
Query: 61 DMFVEIGKGVSPNFVQALELMLAKGEYLAFAPDTEETRTMINLMSIKFPKLKLVSRIYKD 120
D VE+GKG SP+F + L+L+LA+G++LAFAPDT+ET MI+++S+KFP+L+LV++I+KD
Sbjct: 61 DTVVEVGKGNSPSFPEVLKLLLAEGDFLAFAPDTDETNNMIDILSLKFPELRLVTKIFKD 120
Query: 121 ELELETYIRSDLYGTCSQVKDCLNPKIKGAVVFHDQGPELFDYSIRLNHTWAFSGFPDVK 180
++ELETYI S YG CS+V++C NPKIKGAVVFH+QGP LFDYSIRLNHTWAF+GFP+VK
Sbjct: 121 DIELETYITSAHYGVCSEVRNCSNPKIKGAVVFHEQGPHLFDYSIRLNHTWAFAGFPNVK 180
Query: 181 TIMDTNGPYLNDLELGVNIIPTMQYSFSGFLTLQQVLDSFIIFAAQQTGANVATENVEIP 240
+IMDTNGPY+NDLE+G+N IPTMQYSFSGFLTLQQV+DSFIIFA+QQ ++ +
Sbjct: 181 SIMDTNGPYINDLEMGINTIPTMQYSFSGFLTLQQVVDSFIIFASQQN------NDLPLS 234
Query: 241 PSNLSGTHLSLKQPWTLYSPSNIRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISR 300
SNLS + L + PWTL+SPS IRMVPFPTREYTDDEFQSI+K VMG+LYLLGFL+PISR
Sbjct: 235 HSNLS-SALRFELPWTLFSPSVIRMVPFPTREYTDDEFQSIVKSVMGLLYLLGFLFPISR 293
Query: 301 LISYSVFEKEQKIREGLYMMGLKDGIFHLSWFITYAAQFAVSSGIITACTMDSLFKYSDK 360
LISYSVFEKEQKIREGLYMMGLKD IFHLSWFITYA QFA+ SGIITACTM SLFKYSDK
Sbjct: 294 LISYSVFEKEQKIREGLYMMGLKDEIFHLSWFITYALQFALCSGIITACTMGSLFKYSDK 353
Query: 361 TVVFTYFFSFGLSAITLSFFISTFFARAKTAVAVGTLSFLGAFFPYYTVNDEAVPMVLKV 420
T+VFTYFF FGLSAI LSF ISTFF RAKTAVAVGTL+FLGAFFPYYTVNDE+V MVLKV
Sbjct: 354 TLVFTYFFLFGLSAIMLSFMISTFFTRAKTAVAVGTLTFLGAFFPYYTVNDESVSMVLKV 413
Query: 421 IASLLSPTAFALGSVNFADYERAHVGLRWSNMWRASSGVNFLVCLLMMLLDTLLYGVIGL 480
+ASLLSPTAFALGS+NFADYERAHVGLRWSN+WRASSGV+F VCLLMMLLD++LY +GL
Sbjct: 414 VASLLSPTAFALGSINFADYERAHVGLRWSNIWRASSGVSFFVCLLMMLLDSILYCALGL 473
Query: 481 YLDKVLPKENGVRYRWNFIFQNCFRRKKSVIKHHVSS-------AEVKINKKLSKEKECA 533
YLDKVLP+ENGVRY WNFIF F RKK+ +++ + A++++N+
Sbjct: 474 YLDKVLPRENGVRYPWNFIFSKYFGRKKNNLQNRIPGFETDMFPADIEVNQG-------- 525
Query: 534 FALDACEPVVEAISLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILA 593
+ +PV E+ISL+M+QQE+DGRCIQ+R LHKVYA++RGNCCAVNSLQLTLYENQIL+
Sbjct: 526 ---EPFDPVFESISLEMRQQELDGRCIQVRNLHKVYASRRGNCCAVNSLQLTLYENQILS 582
Query: 594 LLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTV 653
LLGHNGAGKSTTISMLVGL+PPT+GDAL+ G +I +MDEIRK LGVCPQ+DILFPELTV
Sbjct: 583 LLGHNGAGKSTTISMLVGLLPPTSGDALILGNSIITNMDEIRKELGVCPQHDILFPELTV 642
Query: 654 REHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDS 713
REHLEMFAVLKGV+E L+S V +M +EVGL+DK+N +VRALSGGMKRKLSLGIALIG+S
Sbjct: 643 REHLEMFAVLKGVEEGSLKSTVVDMAEEVGLSDKINTLVRALSGGMKRKLSLGIALIGNS 702
Query: 714 KVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKC 773
KV+ILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRI IMANGSLKC
Sbjct: 703 KVIILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIGIMANGSLKC 762
Query: 774 CGSSLFLKHQYGVGYTLTLVKSAPDASAAADIVYRHIPSALCVSEVGTEITFKLPLASSS 833
CGSS+FLKH YGVGYTLTLVK++P S AA IV+RHIPSA CVSEVG EI+FKLPLAS
Sbjct: 763 CGSSIFLKHHYGVGYTLTLVKTSPTVSVAAHIVHRHIPSATCVSEVGNEISFKLPLASLP 822
Query: 834 SFESMFREIESCIRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFLRVAGCNLDESEC 893
FE+MFREIESC++ SV + + ED+DY GI+S+GISVTTLEEVFLRVAGCNLD +
Sbjct: 823 CFENMFREIESCMKNSVDRSKISEIEDSDYPGIQSYGISVTTLEEVFLRVAGCNLDIED- 881
Query: 894 ISQRNNLVTLDYVSA-------ESDDQAPKRISNCKLFGNYKWVFGFIVTVVQRACTLIV 946
Q + V+ D S+ + PK +++C G I+T V +A LIV
Sbjct: 882 -KQEDIFVSPDTKSSLVCIGSNQKSSMQPKLLASCNDGA------GVIITSVAKAFRLIV 934
Query: 947 AAVLGFLNFLIKKCCTCCIISRSMFWQHCKALFIKRAVSARRDRKTIVFQLLIPAIFLLV 1006
AAV + F+ +CC C IISRSMFW+HCKALFIKRA SA RDRKT+ FQ +IPA+FLL
Sbjct: 935 AAVWTLIGFISIQCCGCSIISRSMFWRHCKALFIKRARSACRDRKTVAFQFIIPAVFLLF 994
Query: 1007 GLLFLKLKPHPDMLSVTFTTSNFNPLLSGGGGGGPIPFDLSWPIANEVSKYIQGGWIQRF 1066
GLLFL+LKPHPD S+T TT+ FNPLLSG GGGGPIPFDLS PIA EV++YI+GGWIQ
Sbjct: 995 GLLFLQLKPHPDQKSITLTTAYFNPLLSGKGGGGPIPFDLSVPIAKEVAQYIEGGWIQPL 1054
Query: 1067 KQSSYRFPNAEKALADAVDAAGPTLGPVLLSMSEYLMSSFNESYQSRYGAIVMDDQNDDG 1126
+ +SY+FPN ++ALADA+DAAGPTLGP LLSMSE+LMSSF++SYQSRYG+I+MD Q+ DG
Sbjct: 1055 RNTSYKFPNPKEALADAIDAAGPTLGPTLLSMSEFLMSSFDQSYQSRYGSILMDGQHPDG 1114
Query: 1127 SLGFTVLHNSSCQHAGPTFINVMNTAILRLATGNRNMTIRTRNHPLPTTQSQQLQRHDLD 1186
SLG+TVLHN +CQHAGP +INVM+ AILRLATGN+NMTI+TRNHPLP T++Q++QRHDLD
Sbjct: 1115 SLGYTVLHNGTCQHAGPIYINVMHAAILRLATGNKNMTIQTRNHPLPPTKTQRIQRHDLD 1174
Query: 1187 AFSVSIIISIAFSFIPASFAVAIVKEREVKAKQQQLISGVSVLSYWTSTYIWDFISFLFP 1246
AFS +II++IAFSFIPASFAV IVKEREVKAK QQLISGVSVLSYW STY+WDFISFLFP
Sbjct: 1175 AFSAAIIVNIAFSFIPASFAVPIVKEREVKAKHQQLISGVSVLSYWLSTYVWDFISFLFP 1234
Query: 1247 SSCAIILFYIFGLDQFVGRGCLLPTVLIFLGYGLAIASSTYCLTFFFSDHTMAQNVVLLV 1306
S+ AIILFY FGL+QF+G G LPTVL+ L YGLAIASSTYCLTFFF++H+MAQNV+L+V
Sbjct: 1235 STFAIILFYAFGLEQFIGIGRFLPTVLMLLEYGLAIASSTYCLTFFFTEHSMAQNVILMV 1294
Query: 1307 HFFTGLILMVISFIMGLLEATRSANSLLKNFFRLSPGFCFADGLASLALLRQGMKDKTSD 1366
HFF+GLILMVISF+MGL+ AT SANS LKNFFRLSPGFCF+DGLASLALLRQGMKDK+S
Sbjct: 1295 HFFSGLILMVISFVMGLIPATASANSYLKNFFRLSPGFCFSDGLASLALLRQGMKDKSSH 1354
Query: 1367 GVFDWNVTSASICYLGCESICYFLLTLGLELLPSHKWTLMTIKEWWKGTRHRLCNTPSSY 1426
GVF+WNVT ASICYLG ESI YFL+TLGLEL+P K +I EWW+ + SS
Sbjct: 1355 GVFEWNVTGASICYLGLESIFYFLVTLGLELMPVQKVMSFSIGEWWQNLKAFKQGAGSSS 1414
Query: 1427 LEPLLQSSSESDTLDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAV 1486
EPLL+ S+ + + D+ +DIDVQ ER+RV+SG DN ++YL+NLRKVYPG K KVAV
Sbjct: 1415 TEPLLKDSTGAISTDMEDDIDVQEERDRVISGLSDNTMLYLQNLRKVYPGDKHHGPKVAV 1474
Query: 1487 HSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIG 1546
SLTFSVQAGECFGFLGTNGAGKTTTLSM+SGEE PT GTAFIFGKDI + PKA R+ IG
Sbjct: 1475 QSLTFSVQAGECFGFLGTNGAGKTTTLSMLSGEETPTSGTAFIFGKDIVASPKAIRQHIG 1534
Query: 1547 YCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGN 1606
YCPQFDAL EYLTV+EHLELYARIKGV ++R+D+VV EKLVEFDLLKH+ KPSFTLSGGN
Sbjct: 1535 YCPQFDALFEYLTVKEHLELYARIKGVVDHRIDNVVTEKLVEFDLLKHSHKPSFTLSGGN 1594
Query: 1607 KRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEA 1666
KRKLSVAIAMIGDPPIVILDEPSTGMDP+AKRFMW+VISRLSTR GKTAVILTTHSMNEA
Sbjct: 1595 KRKLSVAIAMIGDPPIVILDEPSTGMDPVAKRFMWDVISRLSTRSGKTAVILTTHSMNEA 1654
Query: 1667 QALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQERVFDI 1726
QALCTRIGIMVGG+LRCIGSPQHLKTR+GN LELEVKP EVS+V+LE+ CQIIQ+ +F++
Sbjct: 1655 QALCTRIGIMVGGRLRCIGSPQHLKTRYGNHLELEVKPNEVSNVELENFCQIIQQWLFNV 1714
Query: 1727 PSQRRSLLDDLEVCIGGIDSISSENATAAEISLSQEMLLIVGRWLGNEERIKTLISSSSS 1786
P+Q RSLL DLEVCIG DSI+ + A+A+EISLS EM+ + ++LGNE+R+ TL+
Sbjct: 1715 PTQPRSLLGDLEVCIGVSDSITPDTASASEISLSPEMVQRIAKFLGNEQRVSTLVPPLPE 1774
Query: 1787 PDRIFGEQLSEQLVRDG 1803
D F +QLSEQL RDG
Sbjct: 1775 EDVRFDDQLSEQLFRDG 1791
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|33350934|gb|AAK39643.3| ATP-binding cassette transporter AtABCA1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2688 bits (6967), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1326/1815 (73%), Positives = 1545/1815 (85%), Gaps = 36/1815 (1%)
Query: 1 MGTAKRHLKAMLRKNWLLKVRHPFVTAAEILLPTVVMLLLIAVRTRVDTRIHPAQPYIRK 60
MG++KR KAMLRKNWLLK RHPFVT+AEILLPT+VMLLLIAVRTRVDT IHPA I K
Sbjct: 1 MGSSKRQFKAMLRKNWLLKTRHPFVTSAEILLPTIVMLLLIAVRTRVDTTIHPAHSNIDK 60
Query: 61 DMFVEIGKGVSPNFVQALELMLAKGEYLAFAPDTEETRTMINLMSIKFPKLKLVSRIYKD 120
D VE+GKG SP+F + L+L+LA+G++LAFAPDT+ET MI+++S+KFP+L+LV++I+KD
Sbjct: 61 DTVVEVGKGNSPSFPEVLKLLLAEGDFLAFAPDTDETNNMIDILSLKFPELRLVTKIFKD 120
Query: 121 ELELETYIRSDLYGTCSQVKDCLNPKIKGAVVFHDQGPELFDYSIRLNHTWAFSGFPDVK 180
++ELETYI S YG CS+V++C NPKIKGAVVFH+QGP LFDYSIRLNHTWAF+GFP+VK
Sbjct: 121 DIELETYITSAHYGVCSEVRNCSNPKIKGAVVFHEQGPHLFDYSIRLNHTWAFAGFPNVK 180
Query: 181 TIMDTNGPYLNDLELGVNIIPTMQYSFSGFLTLQQVLDSFIIFAAQQTGANVATENVEIP 240
+IMDTNGPY+NDLE+G+N IPTMQYSFSGFLTLQQV+DSFIIFA+QQ ++ +
Sbjct: 181 SIMDTNGPYINDLEMGINTIPTMQYSFSGFLTLQQVVDSFIIFASQQN------NDLPLS 234
Query: 241 PSNLSGTHLSLKQPWTLYSPSNIRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISR 300
SNLS + L + PWTL+SPS IRMVPFPTREYTDDEFQSI+K VMG+LYLLGFL+PISR
Sbjct: 235 HSNLS-SALRFELPWTLFSPSVIRMVPFPTREYTDDEFQSIVKSVMGLLYLLGFLFPISR 293
Query: 301 LISYSVFEKEQKIREGLYMMGLKDGIFHLSWFITYAAQFAVSSGIITACTMDSLFKYSDK 360
LISYSVFEKEQKIREGLYMMGLKD IFHLSWFITYA QFA+ SGIITACTM SLFKYSDK
Sbjct: 294 LISYSVFEKEQKIREGLYMMGLKDEIFHLSWFITYALQFALCSGIITACTMGSLFKYSDK 353
Query: 361 TVVFTYFFSFGLSAITLSFFISTFFARAKTAVAVGTLSFLGAFFPYYTVNDEAVPMVLKV 420
T+VFTYFF FGLSAI LSF ISTFF RAKTAVAVGTL+FLGAFFPYYTVNDE+V MVLKV
Sbjct: 354 TLVFTYFFLFGLSAIMLSFMISTFFTRAKTAVAVGTLTFLGAFFPYYTVNDESVSMVLKV 413
Query: 421 IASLLSPTAFALGSVNFADYERAHVGLRWSNMWRASSGVNFLVCLLMMLLDTLLYGVIGL 480
+ASLLSPTAFALGS+NFADYERAHVGLRWSN+WRASSGV+F VCLLMMLLD++LY +GL
Sbjct: 414 VASLLSPTAFALGSINFADYERAHVGLRWSNIWRASSGVSFFVCLLMMLLDSILYCALGL 473
Query: 481 YLDKVLPKENGVRYRWNFIFQNCFRRKKSVIKHHVSS-------AEVKINKKLSKEKECA 533
YLDKVLP+ENGVRY WNFIF F RKK+ +++ + A++++N+
Sbjct: 474 YLDKVLPRENGVRYPWNFIFSKYFGRKKNNLQNRIPGFETDMFPADIEVNQG-------- 525
Query: 534 FALDACEPVVEAISLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILA 593
+ +PV E+ISL+M+QQE+DGRCIQ+R LHKVYA++RGNCCAVNSLQLTLYENQIL+
Sbjct: 526 ---EPFDPVFESISLEMRQQELDGRCIQVRNLHKVYASRRGNCCAVNSLQLTLYENQILS 582
Query: 594 LLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTV 653
LLGHNGAGKSTTISMLVGL+PPT+GDAL+ +I +MDEIRK LGVCPQ+DILFPELTV
Sbjct: 583 LLGHNGAGKSTTISMLVGLLPPTSGDALILENSIITNMDEIRKELGVCPQHDILFPELTV 642
Query: 654 REHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDS 713
REHLEMFAVLKGV+E L+S V +M +EVGL+DK+N +VRALSGGMKRKLSLGIALIG+S
Sbjct: 643 REHLEMFAVLKGVEEGSLKSTVVDMAEEVGLSDKINTLVRALSGGMKRKLSLGIALIGNS 702
Query: 714 KVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKC 773
KV+ILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRI IMANGSLKC
Sbjct: 703 KVIILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIGIMANGSLKC 762
Query: 774 CGSSLFLKHQYGVGYTLTLVKSAPDASAAADIVYRHIPSALCVSEVGTEITFKLPLASSS 833
CGSS+FLKH YGVGYTLTLVK++P S AA IV+RHIPSA CVSEVG EI+FKLPLAS
Sbjct: 763 CGSSIFLKHHYGVGYTLTLVKTSPTVSVAAHIVHRHIPSATCVSEVGNEISFKLPLASLP 822
Query: 834 SFESMFREIESCIRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFLRVAGCNLD---- 889
FE+MFREIESC++ SV + + ED+DY GI+S+GISVTTLEEVFLRVAGCNLD
Sbjct: 823 CFENMFREIESCMKNSVDRSKISEIEDSDYPGIQSYGISVTTLEEVFLRVAGCNLDIEDK 882
Query: 890 ESECISQRNNLVTLDYV-SAESDDQAPKRISNCKLFGNYKWVFGFIVTVVQRACTLIVAA 948
+ + + +L Y+ S + PK +++C G I+T V +A LIVAA
Sbjct: 883 QEDIFVSPDTKSSLVYIGSNQKSSMQPKLLASCNDGA------GVIITSVAKAFRLIVAA 936
Query: 949 VLGFLNFLIKKCCTCCIISRSMFWQHCKALFIKRAVSARRDRKTIVFQLLIPAIFLLVGL 1008
V + F+ +CC C IISRSMFW+HCKALFIKRA SA RDRKT+ FQ +IPA+FLL GL
Sbjct: 937 VWTLIGFISIQCCGCSIISRSMFWRHCKALFIKRARSACRDRKTVAFQFIIPAVFLLFGL 996
Query: 1009 LFLKLKPHPDMLSVTFTTSNFNPLLSGGGGGGPIPFDLSWPIANEVSKYIQGGWIQRFKQ 1068
LFL+LKPHPD S+T TT+ FNPLLSG GGGGPIPFDLS PIA EV++YI+GGWIQ +
Sbjct: 997 LFLQLKPHPDQKSITLTTAYFNPLLSGKGGGGPIPFDLSVPIAKEVTQYIEGGWIQPLRN 1056
Query: 1069 SSYRFPNAEKALADAVDAAGPTLGPVLLSMSEYLMSSFNESYQSRYGAIVMDDQNDDGSL 1128
+SY+FPN ++ALADA+DAAGPTLGP LLSMSE+LMSSF++SYQSRYG+I+MD Q+ DGSL
Sbjct: 1057 TSYKFPNPKEALADAIDAAGPTLGPTLLSMSEFLMSSFDQSYQSRYGSILMDGQHPDGSL 1116
Query: 1129 GFTVLHNSSCQHAGPTFINVMNTAILRLATGNRNMTIRTRNHPLPTTQSQQLQRHDLDAF 1188
G+TVLHN +CQHAGP +INVM+ AILRLATGN+NMTI+TRNHPLP T++Q++QRHDLDAF
Sbjct: 1117 GYTVLHNGTCQHAGPIYINVMHAAILRLATGNKNMTIQTRNHPLPPTKTQRIQRHDLDAF 1176
Query: 1189 SVSIIISIAFSFIPASFAVAIVKEREVKAKQQQLISGVSVLSYWTSTYIWDFISFLFPSS 1248
S +II++IAFSFIPASFAV IVKEREVKAK QQLISGVSVLSYW STY+WDFISFLFPS+
Sbjct: 1177 SAAIIVNIAFSFIPASFAVPIVKEREVKAKHQQLISGVSVLSYWLSTYVWDFISFLFPST 1236
Query: 1249 CAIILFYIFGLDQFVGRGCLLPTVLIFLGYGLAIASSTYCLTFFFSDHTMAQNVVLLVHF 1308
AIILFY FGL+QF+G G LPTVL+ L YGLAIASSTYCLTFFF++H+MAQNV+L+VHF
Sbjct: 1237 FAIILFYAFGLEQFIGIGRFLPTVLMLLEYGLAIASSTYCLTFFFTEHSMAQNVILMVHF 1296
Query: 1309 FTGLILMVISFIMGLLEATRSANSLLKNFFRLSPGFCFADGLASLALLRQGMKDKTSDGV 1368
F+GLILMVISF+MGL+ AT SANS LKNFFRLSPGFCF+DGLASLALLRQGMKDK+S GV
Sbjct: 1297 FSGLILMVISFVMGLIPATASANSYLKNFFRLSPGFCFSDGLASLALLRQGMKDKSSHGV 1356
Query: 1369 FDWNVTSASICYLGCESICYFLLTLGLELLPSHKWTLMTIKEWWKGTRHRLCNTPSSYLE 1428
F+WNVT ASICYLG ESI YFL+TLGLEL+P K +I EWW+ + SS E
Sbjct: 1357 FEWNVTGASICYLGLESIFYFLVTLGLELMPVQKVMSFSIGEWWQNLKAFKQGAGSSSTE 1416
Query: 1429 PLLQSSSESDTLDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHS 1488
PLL+ S+ + + D+ +DIDVQ ER+RV+SG DN ++YL+NLRKVYPG K KVAV S
Sbjct: 1417 PLLKDSTGAISTDMEDDIDVQEERDRVISGLSDNTMLYLQNLRKVYPGDKHHGPKVAVQS 1476
Query: 1489 LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYC 1548
LTFSVQAGECFGFLGTNGAGKTTTLSM+SGEE PT GTAFIFGKDI + PKA R+ IGYC
Sbjct: 1477 LTFSVQAGECFGFLGTNGAGKTTTLSMLSGEETPTSGTAFIFGKDIVASPKAIRQHIGYC 1536
Query: 1549 PQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKR 1608
PQFDAL EYLTV+EHLELYARIKGV ++R+D+VV EKLVEFDLLKH+ KPSFTLSGGNKR
Sbjct: 1537 PQFDALFEYLTVKEHLELYARIKGVVDHRIDNVVTEKLVEFDLLKHSHKPSFTLSGGNKR 1596
Query: 1609 KLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQA 1668
KLSVAIAMIGDPPIVILDEPSTGMDP+AKRFMW+VISRLSTR GKTAVILTTHSMNEAQA
Sbjct: 1597 KLSVAIAMIGDPPIVILDEPSTGMDPVAKRFMWDVISRLSTRSGKTAVILTTHSMNEAQA 1656
Query: 1669 LCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQERVFDIPS 1728
LCTRIGIMVGG+LRCIGSPQHLKTR+GN LELEVKP EVS+V+LE+ CQIIQ+ +F++P+
Sbjct: 1657 LCTRIGIMVGGRLRCIGSPQHLKTRYGNHLELEVKPNEVSNVELENFCQIIQQWLFNVPT 1716
Query: 1729 QRRSLLDDLEVCIGGIDSISSENATAAEISLSQEMLLIVGRWLGNEERIKTLISSSSSPD 1788
Q RSLL DLEVCIG DSI+ + A+A+EISLS EM+ + ++LGNE+R+ TL+ D
Sbjct: 1717 QPRSLLGDLEVCIGVSDSITPDTASASEISLSPEMVQRIAKFLGNEQRVSTLVPPLPEED 1776
Query: 1789 RIFGEQLSEQLVRDG 1803
F +QLSEQL RDG
Sbjct: 1777 VRFDDQLSEQLFRDG 1791
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297827817|ref|XP_002881791.1| ATPase, coupled to transmembrane movement of substances [Arabidopsis lyrata subsp. lyrata] gi|297327630|gb|EFH58050.1| ATPase, coupled to transmembrane movement of substances [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 2649 bits (6866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1326/1841 (72%), Positives = 1542/1841 (83%), Gaps = 56/1841 (3%)
Query: 1 MGTAKRHLKAMLRKNWLLKVRHPFVTAAEILLPTVVMLLLIAVRTRVDTRIHPAQPYIRK 60
MG++ R LKAMLRKNWLLK RHPFVT+AEILLPT+VMLLLIAVRTRVDT IHPA+ I K
Sbjct: 1 MGSSMRQLKAMLRKNWLLKTRHPFVTSAEILLPTLVMLLLIAVRTRVDTTIHPARSNIEK 60
Query: 61 DMFVEIGKGVSPNFVQALELMLAKGEYLAFAPDTEETRTMINLMSIKFPKLKLVSRIYKD 120
D VE+GKG SP+F Q L+L+LA+GE+LAFAPDT+ET MI+++S+KFP+L+LV++I+KD
Sbjct: 61 DTIVEVGKGNSPSFPQVLKLLLAEGEFLAFAPDTDETNNMIDILSLKFPELRLVTKIFKD 120
Query: 121 ELELETYIRSDLYGTCSQVKDCLNPKIKGAVVFHDQGPELFDYSIRLNHTWAFSGFPDVK 180
++ELETYI S YG C++V++C NPKIKGAVVFH+QGP LFDYSIRLNHTWAF+GFP+VK
Sbjct: 121 DIELETYITSAHYGLCTEVRNCSNPKIKGAVVFHEQGPHLFDYSIRLNHTWAFAGFPNVK 180
Query: 181 TIMDTNGPYLNDLELGVNIIPTMQYSFSGFLTLQQVLDSFIIFAAQQTGANVATENVEIP 240
+IMDTNGPY+NDLE+G+N IPTMQYSFSGFLTLQQV+DSFIIFA+QQ N+++P
Sbjct: 181 SIMDTNGPYINDLEMGINTIPTMQYSFSGFLTLQQVVDSFIIFASQQ--------NIDLP 232
Query: 241 PSNLS-GTHLSLKQPWTLYSPSNIRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPIS 299
S+ + G+ LS + PWTL+SPS IRMVPFPTREYTDDEFQSI+K VMG+LYLLGFL+PIS
Sbjct: 233 LSHSNLGSALSFELPWTLFSPSVIRMVPFPTREYTDDEFQSIVKSVMGLLYLLGFLFPIS 292
Query: 300 RLISYSVFEKEQKIREGLYMMGLKDGIFHLSWFITYAAQ--------------------- 338
RLISYSVFEKEQKIREGLYMMGLKD IFHLSWFITYA Q
Sbjct: 293 RLISYSVFEKEQKIREGLYMMGLKDEIFHLSWFITYALQAAFSVVNNIDFSWKKQTLYFF 352
Query: 339 ----FAVSSGIITACTMDSLFKYSDKTVVFTYFFSFGLSAITLSFFISTFFARAKTAVAV 394
FA+ SGIITACTM SLFKYSDKT+VFTYFF FGLSAI LSF ISTFF RAKTAVAV
Sbjct: 353 RYIVFALCSGIITACTMGSLFKYSDKTLVFTYFFLFGLSAIMLSFMISTFFTRAKTAVAV 412
Query: 395 GTLSFLGAFFPYYTVNDEAVPMVLKVIASLLSPTAFALGSVNFADYERAHVGLRWSNMWR 454
GTL+FLGAFFPYYTVNDE+V MVLKV+ASLLSPTAFALGS+NFADYERAHVGLRWSN+WR
Sbjct: 413 GTLTFLGAFFPYYTVNDESVSMVLKVVASLLSPTAFALGSINFADYERAHVGLRWSNIWR 472
Query: 455 ASSGVNFLVCLLMMLLDTLLYGVIGLYLDKVLPKENGVRYRWNFIFQNCFRRKKSVIKHH 514
ASSGV+F VCLLMMLLD++LY +GLYLDKVLP+ENGVRY WNFIF CF RKK ++
Sbjct: 473 ASSGVSFFVCLLMMLLDSILYCALGLYLDKVLPRENGVRYPWNFIFSKCFGRKKKNFQNR 532
Query: 515 VSSAEVKINKKLSKEKECAFALDACEPVVEAISLDMKQQEVDGRCIQIRKLHKVYATKRG 574
+ E + + + + + +PV+E+ISL+M+QQE+DGRCIQ+R LHKVYA++RG
Sbjct: 533 IPGLETDMFPEDVELNQG----EPFDPVIESISLEMRQQELDGRCIQVRNLHKVYASRRG 588
Query: 575 NCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEI 634
NCCAVNSL+LTLYENQIL+LLGHNGAGKSTTISMLVGL+PPT+GDAL+ G +I +MDEI
Sbjct: 589 NCCAVNSLRLTLYENQILSLLGHNGAGKSTTISMLVGLLPPTSGDALILGNSIITNMDEI 648
Query: 635 RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRA 694
RK LGVCPQ+DILFPELTVREHLEMFAVLKGV+E+ L+S V +M +EVGL+DK++ +VRA
Sbjct: 649 RKELGVCPQHDILFPELTVREHLEMFAVLKGVEEDSLKSTVVDMAEEVGLSDKISTLVRA 708
Query: 695 LSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMD 754
LSGGMKRKLSLGIALIG+SK++ILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMD
Sbjct: 709 LSGGMKRKLSLGIALIGNSKIIILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMD 768
Query: 755 EAEELGDRIAIMANGSLKCCGSS-LFLKHQYGVGYTLTLVKSAPDASAAADIVYRHIPSA 813
EAEELGDRI IMANGSLKCCGSS +FLKH YGVGYTLTLVK++P S AA IV+RHIPSA
Sbjct: 769 EAEELGDRIGIMANGSLKCCGSSSIFLKHHYGVGYTLTLVKTSPAVSVAARIVHRHIPSA 828
Query: 814 LCVSEVGTEITFKLPLASSSSFESMFREIESCIRKSVSKVEADATEDTDYLGIESFGISV 873
CVSEVG EI+FKLPLAS FE+MFREIES ++ SV + + ED+DY GI+S+GISV
Sbjct: 829 TCVSEVGNEISFKLPLASLPCFENMFREIESYMKNSVDRSKISEIEDSDYPGIQSYGISV 888
Query: 874 TTLEEVFLRVAGCNLD----ESECISQRNNLVTLDYV-SAESDDQAPKRISNCKLFGNYK 928
TTLEEVFLRVAGCNLD + E + +L + S + PK + +C
Sbjct: 889 TTLEEVFLRVAGCNLDIEDKQEEIFVSPDTKASLVCIGSNQKSIMQPKLLESCNEGAR-- 946
Query: 929 WVFGFIVTVVQRACTLIVAAVLGFLNFLIKKCCTCCIISRSMFWQHCKALFIKRAVSARR 988
I+T V +AC LIV AV + F+ +CC C IISR+MFW+HCKALFIKRA SA R
Sbjct: 947 ----VIITSVAKACRLIVVAVWTLIGFISMQCCGCSIISRTMFWRHCKALFIKRARSASR 1002
Query: 989 DRKTIVFQLLIPAIFLLVGLLFLKLKPHPDMLSVTFTTSNFNPLLSGGGGGGPIPFDLSW 1048
DRKT+ FQ +IPA+FLL GLLFL+LKPHPD S+T TT+ FNPLLSG GGGGP+PFDLS
Sbjct: 1003 DRKTVAFQFIIPAVFLLFGLLFLQLKPHPDQKSITLTTAYFNPLLSGNGGGGPVPFDLSE 1062
Query: 1049 PIANEVSKYIQGGWIQRFKQSSYRFPNAEKALADAVDAAGPTLGPVLLSMSEYLMSSFNE 1108
PIA EVS+YI+GGWIQ + +SY+FPN ++ALADA+DAAGPTLGP LLSMSE+LMSSF++
Sbjct: 1063 PIAKEVSQYIEGGWIQHLRNTSYKFPNPKEALADAIDAAGPTLGPTLLSMSEFLMSSFDQ 1122
Query: 1109 SYQSRYGAIVMDDQNDDGSLGFTVLHNSSCQHAGPTFINVMNTAILRLATGNRNMTIRTR 1168
SYQSRYGAI+MD Q+ DGSLG+TVLHN +CQHAGP +INVM+ AILRLATGN+NMTI+TR
Sbjct: 1123 SYQSRYGAILMDGQHPDGSLGYTVLHNGTCQHAGPIYINVMHAAILRLATGNKNMTIQTR 1182
Query: 1169 NHPLPTTQSQQLQRHDLDAFSVSIIISIAFSFIPASFAVAIVKEREVKAKQQQLISGVSV 1228
NHPLP T++Q+LQRHDLDAFS +II++IAFSFIPASFAV IVKEREVKAK QQLISGVSV
Sbjct: 1183 NHPLPPTKTQRLQRHDLDAFSAAIIVNIAFSFIPASFAVPIVKEREVKAKHQQLISGVSV 1242
Query: 1229 LSYWTSTYIWDFISFLFPSSCAIILFYIFGLDQFVGRGCLLPTVLIFLGYGLAIASSTYC 1288
LSYW STY+WDFISFLFPS+ AIILFY FGL+QF+G G LPTVL+ L YGLAIASSTYC
Sbjct: 1243 LSYWLSTYVWDFISFLFPSTFAIILFYAFGLEQFIGIGRFLPTVLMLLEYGLAIASSTYC 1302
Query: 1289 LTFFFSDHTMAQ------NVVLLVHFFTGLILMVISFIMGLLEATRSANSLLKNFFRLSP 1342
LTFFF++H+MAQ NV+L+VHFF+GLILMVISF+MGL+ AT SANS LKNFFRLSP
Sbjct: 1303 LTFFFTEHSMAQATSSYSNVILMVHFFSGLILMVISFVMGLIPATASANSYLKNFFRLSP 1362
Query: 1343 GFCFADGLASLALLRQGMKDKTSDGVFDWNVTSASICYLGCESICYFLLTLGLELLPSHK 1402
GFCF+DGLASLALLRQGMKDK+S GVF+WNVT ASICYLG ESI YFL+TLGLEL+P K
Sbjct: 1363 GFCFSDGLASLALLRQGMKDKSSHGVFEWNVTGASICYLGLESIFYFLVTLGLELMPFQK 1422
Query: 1403 WTLMTIKEWWKGTRHRLCNTPSSYLEPLLQSSSESDTLDLNEDIDVQVERNRVLSGSVDN 1462
+I EWW+ + SS EPLL+ S + + D+ +DIDVQ ER+RV+SG DN
Sbjct: 1423 VMSFSIGEWWQNFKAFKQGAGSSSTEPLLKDSPGAISADMEDDIDVQEERDRVISGLTDN 1482
Query: 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1522
+ YL+NLRKVYPG K KVAV SLTFSVQAGECFGFLGTNGAGKTTTLSM+SGEE P
Sbjct: 1483 TMFYLQNLRKVYPGDKHHGPKVAVQSLTFSVQAGECFGFLGTNGAGKTTTLSMLSGEETP 1542
Query: 1523 TDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV 1582
T GTAFIFGKDI + PKA R+ IGYCPQFDAL EYLTV+EHLELYARIKGV +YR+D+VV
Sbjct: 1543 TSGTAFIFGKDIVASPKAIRQHIGYCPQFDALFEYLTVKEHLELYARIKGVVDYRIDNVV 1602
Query: 1583 MEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1642
EKLVEFDLLKH+ KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP+AKRFMW+
Sbjct: 1603 TEKLVEFDLLKHSHKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPVAKRFMWD 1662
Query: 1643 VISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEV 1702
VISRLSTR GKTAVILTTHSMNEAQALCTRIGIMVGG+LRCIGSPQHLKTR+GN LELEV
Sbjct: 1663 VISRLSTRSGKTAVILTTHSMNEAQALCTRIGIMVGGRLRCIGSPQHLKTRYGNHLELEV 1722
Query: 1703 KPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSENATAAEISLSQE 1762
KP EVSS +LE+ CQIIQ+ +F++P+Q RSLL DLEVCIG DSI+ + A+A+EISLS E
Sbjct: 1723 KPNEVSSEELENFCQIIQQWLFNVPTQPRSLLGDLEVCIGVSDSITPDTASASEISLSPE 1782
Query: 1763 MLLIVGRWLGNEERIKTLISSSSSPDRIFGEQLSEQLVRDG 1803
M+ + ++LGNE+R+ TL+ D F +QLSEQL RDG
Sbjct: 1783 MVQSIAKFLGNEQRVSTLVPPVPEEDVRFEDQLSEQLFRDG 1823
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255577258|ref|XP_002529511.1| abc transporter, putative [Ricinus communis] gi|223531027|gb|EEF32880.1| abc transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2587 bits (6705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1301/1692 (76%), Positives = 1456/1692 (86%), Gaps = 41/1692 (2%)
Query: 115 SRIYKDELELETYIRSDLYGTCSQVKDCLNPKIKGAVVFHDQGPELFDYSIRLNHTWAFS 174
SRIYKDELELETYI SD YG C VK+C NPKIKGA++FHDQGP+LFDYSIRLNHTWAFS
Sbjct: 5 SRIYKDELELETYICSDHYGACGGVKNCSNPKIKGAIIFHDQGPQLFDYSIRLNHTWAFS 64
Query: 175 GFPDVKTIMDTNGPYLNDLELGVNIIPTMQYSFSGFLTLQQVLDSFIIFAAQQTGANVAT 234
GFPDVKTIMD NGPYLNDLELGV+ IPTMQYSFSGF TLQQ++DSFIIF+AQQ+ ++
Sbjct: 65 GFPDVKTIMDVNGPYLNDLELGVSPIPTMQYSFSGFFTLQQLVDSFIIFSAQQSETKTSS 124
Query: 235 ENVEIPPSNLSGTHLSLKQPWTLYSPSNIRMVPFPTREYTDDEFQSIIKRVMGVLYLLGF 294
E +E+P SN S + SL W +SPS IR+VPFPTREYTDDEFQSI+K VMGVLYLLGF
Sbjct: 125 EYIELPSSNSSRSSSSLNFTWKNFSPSTIRIVPFPTREYTDDEFQSIVKNVMGVLYLLGF 184
Query: 295 LYPISRLISYSVFEKEQKIREGLYMMGLKDGIFHLSWFITYAAQFAVSSGIITACTMDSL 354
LYPISRLISYSVFEKEQKIREGLYMMGLKDG+FHLSWFI YA QFA+SSGIITACTMD+L
Sbjct: 185 LYPISRLISYSVFEKEQKIREGLYMMGLKDGVFHLSWFIAYAFQFALSSGIITACTMDNL 244
Query: 355 FKYSDKTVVFTYFFSFGLSAITLSFFISTFFARAKTAVAVGTLSFLGAFFPYYTVNDEAV 414
F YSDK+VVF YFFSFGLSAI LSFFISTFF RAKTAVAVGTLSFLGAFFPYYTVND AV
Sbjct: 245 FYYSDKSVVFVYFFSFGLSAIMLSFFISTFFTRAKTAVAVGTLSFLGAFFPYYTVNDPAV 304
Query: 415 PMVLKVIASLLSPTAFALGSVNFADYERAHVGLRWSNMWRASSGVNFLVCLLMMLLDTLL 474
+LKVIASLLSPTAFALGS+NFADYERAHVGLRWSNMW SSGVNFLVCLLMM LDTLL
Sbjct: 305 LTILKVIASLLSPTAFALGSINFADYERAHVGLRWSNMWLGSSGVNFLVCLLMMWLDTLL 364
Query: 475 YGVIGLYLDKVLPKENGVRYRWNFIFQNCFRRKKSVIKHHVSSAEVKINKKLSKEKECAF 534
Y GLYLDKVLP+ENGVRY WNF+F+NCF R KS IK IN K S + +
Sbjct: 365 YCAAGLYLDKVLPRENGVRYPWNFLFKNCFWRTKSTIK---------INDKSSAKDAYSG 415
Query: 535 ALDACEPVVEAISLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILAL 594
+D EP VEAISLDMKQ E+D RCIQ+R L KVYATKRG C AVNSLQLTLYENQILAL
Sbjct: 416 GIDVIEPAVEAISLDMKQHELDNRCIQVRNLCKVYATKRGKCAAVNSLQLTLYENQILAL 475
Query: 595 LGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVR 654
LGHNGAGKSTTISMLVGL+PPT+GDALVFGKNI DMDEIR GLGVCPQ+DILFPELTVR
Sbjct: 476 LGHNGAGKSTTISMLVGLLPPTSGDALVFGKNILTDMDEIRNGLGVCPQHDILFPELTVR 535
Query: 655 EHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSK 714
EHLEMFA LKGV+E+ LE+ + MV+EVGLADK+N VV +LSGGMKRKLSLGIALIG+SK
Sbjct: 536 EHLEMFATLKGVEEDALETAITVMVEEVGLADKMNTVVSSLSGGMKRKLSLGIALIGNSK 595
Query: 715 VVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCC 774
V+ILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEA+ELGDRIAIMANGSLKCC
Sbjct: 596 VIILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEADELGDRIAIMANGSLKCC 655
Query: 775 GSSLFLKHQYGVGYTLTLVKSAPDASAAADIVYRHIPSALCVSEVGTEITFKLPLASSSS 834
GSSLFLKHQYGVGYTLTLVKSAP AS AADIVYRHIPSA+CVSEVGTE++FKLPLASSS+
Sbjct: 656 GSSLFLKHQYGVGYTLTLVKSAPTASVAADIVYRHIPSAICVSEVGTEVSFKLPLASSSA 715
Query: 835 FESMFREIESCIRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFLRVAGCNLDESECI 894
FE+MFREIESC+R +VS + + E+ +Y+GIES+GISVTTLEEVFLRVAGC+ DE++
Sbjct: 716 FENMFREIESCMRNAVSNSQTNIMEEKNYIGIESYGISVTTLEEVFLRVAGCDCDETDGF 775
Query: 895 SQRNNLVTLDYVSAESDDQAPKRISNCKLFGNYKWVFGFIVTVVQRACTLIVAAVLGFLN 954
Q +N+++ D++ + + AP++I + K+ GNY+ + I +V RAC L+VA L +N
Sbjct: 776 KQSSNILSSDFMIPTAHNHAPEKILDSKMLGNYRKIISVISAIVGRACGLMVATFLSLIN 835
Query: 955 FL-IKKCCTCCIISRSMFWQHCKALFIKRAVSARRDRKTIVFQLLIPAIFLLVGLLFLKL 1013
FL ++ CC CCIISRS FWQH KALFIKRA+SARRDRKTIVFQLL+PA+FLL GLL LKL
Sbjct: 836 FLGMQCCCCCCIISRSTFWQHTKALFIKRAISARRDRKTIVFQLLVPAVFLLFGLLLLKL 895
Query: 1014 KPHPDMLSVTFTTSNFNPLLSGGGGGGPIPFDLSWPIANEVSKYIQGGWIQRFKQSSYRF 1073
KPHPD S+T TTS+FNPLLSGGGGGGPIPFDLS P+A +V++YI GGWIQ FK+++YRF
Sbjct: 896 KPHPDQQSITLTTSHFNPLLSGGGGGGPIPFDLSLPVAEKVAEYIDGGWIQSFKENAYRF 955
Query: 1074 PNAEKALADAVDAAGPTLGPVLLSMSEYLMSSFNESYQSRYGAIVMDDQNDDGSLGFTVL 1133
P+++KALADA+ AAGPTLGPVLLSMSE+LMSSFNESYQSRYGA+VMD QNDDGSLG+T+L
Sbjct: 956 PDSDKALADAIKAAGPTLGPVLLSMSEFLMSSFNESYQSRYGAVVMDSQNDDGSLGYTIL 1015
Query: 1134 HNSSCQHAGPTFINVMNTAILRLATGNRNMTIRTRNHPLPTTQSQQLQRHDLDAFSVSII 1193
HN SCQH+ PT+INVMN AILRLATG +NMTIRTRNHPLP T+SQ LQRHDLDAFS +II
Sbjct: 1016 HNGSCQHSAPTYINVMNAAILRLATGEKNMTIRTRNHPLPMTKSQHLQRHDLDAFSAAII 1075
Query: 1194 ISIAFSFIPASFAVAIVKEREVKAKQQQLISGVSVLSYWTSTYIWDFISFLFPSSCAIIL 1253
+SIAFSFIPASFAVAIVKEREVKAK QQLISGVSVLSYW ST+IWDF+SFL PSS I+L
Sbjct: 1076 VSIAFSFIPASFAVAIVKEREVKAKHQQLISGVSVLSYWASTFIWDFVSFLVPSSFGIVL 1135
Query: 1254 FYIFGLDQFVGRGCLLPTVLIFLGYGLAIASSTYCLTFFFSDHTMAQNVVLLVHFFTGLI 1313
FYIFGLDQF+GR C LPT+ +FL YGLA+ASSTYCLTF FSDHTMAQNVVLLVHFFTGLI
Sbjct: 1136 FYIFGLDQFIGRDCFLPTIFLFLEYGLAVASSTYCLTFLFSDHTMAQNVVLLVHFFTGLI 1195
Query: 1314 LMVISFIMGLLEATRSANSLLKNFFRLSPGFCFADGLASLALLRQGMKDKTSDGVFDWNV 1373
LMVISFIMGL+E T SAN++LKNFFR+SPGFCFADGLASLALLRQGMKDK+SD
Sbjct: 1196 LMVISFIMGLIETTTSANNVLKNFFRISPGFCFADGLASLALLRQGMKDKSSDA------ 1249
Query: 1374 TSASIC--YLGCESICYFLLTLGLELLPSHKWTLMTIKEWWKGTRHRLCNTPSSYLEPLL 1431
+ S+C G + G +W+G+ S Y EPLL
Sbjct: 1250 SRFSVCDDRFGPGPFAWHAKREG--------------GNFWRGSS-------SGYSEPLL 1288
Query: 1432 QSSSESDTLDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTF 1491
+ S E+ LD +EDIDVQ ERNRV+SGSV NAI+YLRNL+KVYPGGK S K+AVHSLTF
Sbjct: 1289 K-SPEAVALDFDEDIDVQTERNRVVSGSVGNAILYLRNLQKVYPGGK-SGKKIAVHSLTF 1346
Query: 1492 SVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQF 1551
SVQAGECFGFLGTNGAGKTTTLSM+SGEE PTDGTAFIFGKDI S+PK+ R+ IGYCPQF
Sbjct: 1347 SVQAGECFGFLGTNGAGKTTTLSMLSGEESPTDGTAFIFGKDIGSNPKSVRQHIGYCPQF 1406
Query: 1552 DALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLS 1611
DALLE+LTV+EHLELYARIKGVA+Y + DVVMEKLVEFDLLKHA KPSF LSGGNKRKLS
Sbjct: 1407 DALLEFLTVREHLELYARIKGVADYSITDVVMEKLVEFDLLKHADKPSFVLSGGNKRKLS 1466
Query: 1612 VAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCT 1671
VAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCT
Sbjct: 1467 VAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCT 1526
Query: 1672 RIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRR 1731
RIGIMVGG+LRCIGSPQHLKTRFGN LELEVKP EVS V+LE+LCQIIQ R+ +IPS R
Sbjct: 1527 RIGIMVGGRLRCIGSPQHLKTRFGNHLELEVKPAEVSPVELENLCQIIQGRLLNIPSYPR 1586
Query: 1732 SLLDDLEVCIGGIDSISSENATAAEISLSQEMLLIVGRWLGNEERIKTLISSSSSPDRIF 1791
SLL+DLE+CIG +D I+SENA+AAEI LS+EM+L++G+WLGNEER+ TL SSSS+ D
Sbjct: 1587 SLLNDLEICIGAVDFITSENASAAEIRLSKEMILMIGQWLGNEERVNTLFSSSSTSDGGS 1646
Query: 1792 GEQLSEQLVRDG 1803
EQL EQLVRDG
Sbjct: 1647 AEQLGEQLVRDG 1658
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|79324883|ref|NP_001031526.1| ABC transporter A family member 1 [Arabidopsis thaliana] gi|330254924|gb|AEC10018.1| ABC transporter A family member 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2345 bits (6076), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1206/1834 (65%), Positives = 1424/1834 (77%), Gaps = 160/1834 (8%)
Query: 29 EILLPTVVMLLLIAVRTRVDTRIHPAQPYIRKDMFVEIGKGVSPNFVQALELMLAKGEYL 88
+ILLPT+VMLLLIAVRTRVDT IHPA I KD VE+GKG SP+F + L+L+LA+G++L
Sbjct: 23 QILLPTIVMLLLIAVRTRVDTTIHPAHSNIDKDTVVEVGKGNSPSFPEVLKLLLAEGDFL 82
Query: 89 AFAPDTEETRTMINLMSIKFPKLKLVSRIYKDELELETYIRSDLYGTCSQVKDCLNPKIK 148
AFAPDT+ET MI+++S+KFP+L+LV++I+KD++ELETYI S YG CS+V++C NPKIK
Sbjct: 83 AFAPDTDETNNMIDILSLKFPELRLVTKIFKDDIELETYITSAHYGVCSEVRNCSNPKIK 142
Query: 149 GAVVFHDQGPELFDYSIRLNHTWAFSGFPDVKTIMDTNGPYLNDLELGVNIIPTMQYSFS 208
GAVVFH+QGP LFDYSIRLNHTWAF+GFP+VK+IMDTNGPY+NDLE+G+N IPTMQYSFS
Sbjct: 143 GAVVFHEQGPHLFDYSIRLNHTWAFAGFPNVKSIMDTNGPYINDLEMGINTIPTMQYSFS 202
Query: 209 GFLTLQQVLDSFIIFAAQQTGANVATENVEIPPSNLSGTHLSLKQPWTLYSPSNIRMVPF 268
GFLTLQQV+DSFIIFA+QQ ++ + SNLS L + PWTL+SPS IRMVPF
Sbjct: 203 GFLTLQQVVDSFIIFASQQ------NNDLPLSHSNLSSA-LRFELPWTLFSPSVIRMVPF 255
Query: 269 PTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLYMMGLKDGIFH 328
PTREYTDDEFQSI+K VM GL++ D
Sbjct: 256 PTREYTDDEFQSIVKSVM-----------------------------GLFLFKYSDKTLV 286
Query: 329 LSWFITYAAQFAVSSGIITACTMDSLFKYSDKTVVFTYFFSFGLSAITLSFFISTFFARA 388
++F + + S +I+ FF+ +A+
Sbjct: 287 FTYFFLFGLSAIMLSFMIST------------------FFTRAKTAV------------- 315
Query: 389 KTAVAVGTLSFLGAFFPYYTVNDEAVPMVLKVIASLLSPTAFALGSVNFADYERAHVGLR 448
AVGTL+FLGAFFPYYTVNDE+V MVLKV+ASLLSPTAFALGS+NFADYERAHVGLR
Sbjct: 316 ----AVGTLTFLGAFFPYYTVNDESVSMVLKVVASLLSPTAFALGSINFADYERAHVGLR 371
Query: 449 WSNMWRASSGVNFLVCLLMMLLDTLLYGVIGLYLDKVLPKENGVRYRWNFIFQNCFRRKK 508
WSN+WRASSGV+F VCLLMMLLD++LY +GLYLDKVLP+ENGVRY WNFIF F RKK
Sbjct: 372 WSNIWRASSGVSFFVCLLMMLLDSILYCALGLYLDKVLPRENGVRYPWNFIFSKYFGRKK 431
Query: 509 SVIKHHVSS-------AEVKINKKLSKEKECAFALDACEPVVEAISLDMKQQEVDGRCIQ 561
+ +++ + A++++N+ + +PV E+ISL+M+QQE+DGRCIQ
Sbjct: 432 NNLQNRIPGFETDMFPADIEVNQG-----------EPFDPVFESISLEMRQQELDGRCIQ 480
Query: 562 IRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDAL 621
+R LHKVYA++RGNCCAVNSLQLTLYENQIL+LLGHNGAGKSTTISMLVGL+PPT+GDAL
Sbjct: 481 VRNLHKVYASRRGNCCAVNSLQLTLYENQILSLLGHNGAGKSTTISMLVGLLPPTSGDAL 540
Query: 622 VFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDE 681
+ G +I +MDEIRK LGVCPQ+DILFPELTVREHLEMFAVLKGV+E L+S V +M +E
Sbjct: 541 ILGNSIITNMDEIRKELGVCPQHDILFPELTVREHLEMFAVLKGVEEGSLKSTVVDMAEE 600
Query: 682 VGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK 741
VGL+DK+N +VRALSGGMKRKLSLGIALIG+SKV+ILDEPTSGMDPYSMRLTWQLIKKIK
Sbjct: 601 VGLSDKINTLVRALSGGMKRKLSLGIALIGNSKVIILDEPTSGMDPYSMRLTWQLIKKIK 660
Query: 742 KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKSAPDASA 801
KGRIILLTTHSMDEAEELGDRI IMANGSLKCCGSS+FLKH YGVGYTLTLVK++P S
Sbjct: 661 KGRIILLTTHSMDEAEELGDRIGIMANGSLKCCGSSIFLKHHYGVGYTLTLVKTSPTVSV 720
Query: 802 AADIVYRHIPSALCVSEVGTEITFKLPLASSSSFESMFREIESCIRKSVSKVEADATEDT 861
AA IV+RHIPSA CVSEVG EI+FKLPLAS FE+MFREIESC++ S D+
Sbjct: 721 AAHIVHRHIPSATCVSEVGNEISFKLPLASLPCFENMFREIESCMKNS----------DS 770
Query: 862 DYLGIESFGISVTTLEEVFLRVAGCNLDESECISQRNNLVTLDYVSA-------ESDDQA 914
DY GI+S+GISVTTLEEVFLRVAGCNLD + Q + V+ D S+ +
Sbjct: 771 DYPGIQSYGISVTTLEEVFLRVAGCNLDIED--KQEDIFVSPDTKSSLVCIGSNQKSSMQ 828
Query: 915 PKRISNCKLFGNYKWVFGFIVTVVQRACTLIVAAVLGFLNFLIKKCCTCCIISRSMFWQH 974
PK +++C G I+T V +A LIVAAV + F+ +CC C IISRSMFW+H
Sbjct: 829 PKLLASCNDGA------GVIITSVAKAFRLIVAAVWTLIGFISIQCCGCSIISRSMFWRH 882
Query: 975 CKALFIKRAVSARRDRKTIVFQLLIPAIFLLVGLLFLKLKPHPDMLSVTFTTSNFNPLLS 1034
CKALFIKRA SA RDRKT+ FQ +IPA+FLL GLLFL+LKPHPD S+T TT+ FNPLLS
Sbjct: 883 CKALFIKRARSACRDRKTVAFQFIIPAVFLLFGLLFLQLKPHPDQKSITLTTAYFNPLLS 942
Query: 1035 GGGGGGPIPFDLSWPIANEVSKYIQGGWIQRFKQSSYRFPNAEKALADAVDAAGPTLGPV 1094
G GGGGPIPFDLS PIA EV++YI+GGWIQ + +SY+FPN ++ALADA+DAAGPTLGP
Sbjct: 943 GKGGGGPIPFDLSVPIAKEVAQYIEGGWIQPLRNTSYKFPNPKEALADAIDAAGPTLGPT 1002
Query: 1095 LLSMSEYLMSSFNESYQ-SRYGAIVMDDQND-DGSLGFTVLHNSSCQHAGPTFINVMNTA 1152
LLSMSE+LMSSF++SYQ SR G D N DGSLG+TVLHN +CQHAGP +INVM+ A
Sbjct: 1003 LLSMSEFLMSSFDQSYQSSREGLSSHDSCNHPDGSLGYTVLHNGTCQHAGPIYINVMHAA 1062
Query: 1153 ILRLATGNRNMTIRTRNHPLPTTQSQQLQRHDLDAFSVSIIISIAFSFIPASFAVAIVKE 1212
ILRLATGN+NMTI+TRNHPLP T++Q++QRHDLDAFS +II++IAFSFIPASFAV IVKE
Sbjct: 1063 ILRLATGNKNMTIQTRNHPLPPTKTQRIQRHDLDAFSAAIIVNIAFSFIPASFAVPIVKE 1122
Query: 1213 REVKAKQQQLISGVSVLSYWTSTYIWDFISFLFPSSCAIILFYIFGLDQFVGRGCLLPTV 1272
REVKAK QQLISGVSVLSYW STY+WDFISFLFPS+ AIILFY FGL+QF+G G LPTV
Sbjct: 1123 REVKAKHQQLISGVSVLSYWLSTYVWDFISFLFPSTFAIILFYAFGLEQFIGIGRFLPTV 1182
Query: 1273 LIFLGYGLAIASSTYCLTFFFSDHTMAQ--------------------NVVLLVHFFTGL 1312
L+ L YGLAIASSTYCLTFFF++H+MAQ NV+L+VHFF+GL
Sbjct: 1183 LMLLEYGLAIASSTYCLTFFFTEHSMAQATSSYSVLLPISLFVFSFSSNVILMVHFFSGL 1242
Query: 1313 ILMVISFIMGLLEATRSANSLLK----------NFFRLSPGFCFADGLASLALLRQGMKD 1362
ILMVISF+MGL+ AT SANS LK NFFRLSPGFCF+DGLASLALLRQGMKD
Sbjct: 1243 ILMVISFVMGLIPATASANSYLKELILFRYALQNFFRLSPGFCFSDGLASLALLRQGMKD 1302
Query: 1363 KTSDGVFDWNVTSASICYLGCE---SIC-YFLLTLGLELLPSHKWTLMTIKEWWKGTR-- 1416
K+S GVF+WNVT ASICYLG E C Y +L L K +L+ + T
Sbjct: 1303 KSSHGVFEWNVTGASICYLGLEVRLEYCRYSMLLLSFFHGIDTKLSLIYTIGASRLTELI 1362
Query: 1417 -HRLCNTPSSYLEPLLQSSSESDTLDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYP 1475
R+ +T S EPLL+ S+ + + D+ +DIDVQ ER+RV+SG DN ++YL+NLRKVYP
Sbjct: 1363 YDRVYSTSFS-TEPLLKDSTGAISTDMEDDIDVQEERDRVISGLSDNTMLYLQNLRKVYP 1421
Query: 1476 GGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIR 1535
G K KVAV SLTFSVQAGECFGFLGTNGAGKTTTLSM+SGEE PT GTAFIFGKDI
Sbjct: 1422 GDKHHGPKVAVQSLTFSVQAGECFGFLGTNGAGKTTTLSMLSGEETPTSGTAFIFGKDIV 1481
Query: 1536 SDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHA 1595
+ PKA R+ IGYCPQFDAL EYLTV+EHLELYARIKGV ++R+D+VV EKLVEFDLLKH+
Sbjct: 1482 ASPKAIRQHIGYCPQFDALFEYLTVKEHLELYARIKGVVDHRIDNVVTEKLVEFDLLKHS 1541
Query: 1596 KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTA 1655
KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP+AKRFMW+VISRLSTR GKTA
Sbjct: 1542 HKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPVAKRFMWDVISRLSTRSGKTA 1601
Query: 1656 VILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELE------VKPTEVSS 1709
VILTTHSMNEAQALCTRIGIMVGG+LRCIGSPQHLKTR+GN LELE VKP EVS+
Sbjct: 1602 VILTTHSMNEAQALCTRIGIMVGGRLRCIGSPQHLKTRYGNHLELEVPFYNGVKPNEVSN 1661
Query: 1710 VDLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSENATAAEISLSQEMLLIVGR 1769
V+LE+ CQIIQ+ +F++P+Q RSLL DLEVCIG DSI+ + A+A+EISLS EM+ + +
Sbjct: 1662 VELENFCQIIQQWLFNVPTQPRSLLGDLEVCIGVSDSITPDTASASEISLSPEMVQRIAK 1721
Query: 1770 WLGNEERIKTLISSSSSPDRIFGEQLSEQLVRDG 1803
+LGNE+R+ TL+ D F +QLSEQL RDG
Sbjct: 1722 FLGNEQRVSTLVPPLPEEDVRFDDQLSEQLFRDG 1755
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297739642|emb|CBI29824.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1937 bits (5019), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1001/1304 (76%), Positives = 1120/1304 (85%), Gaps = 26/1304 (1%)
Query: 1 MGTAKRHLKAMLRKNWLLKVRHPFVTAAEILLPTVVMLLLIAVRTRVDTRIHPAQPYIRK 60
MG + L+AMLRKNWLLK+RHPFVT AEILLPTVVML+LIAVRT+VDT++H AQPY+RK
Sbjct: 1 MGRQRAQLRAMLRKNWLLKIRHPFVTCAEILLPTVVMLMLIAVRTQVDTKVHSAQPYVRK 60
Query: 61 DMFVEIGKG-VSPNFVQALELMLAKGEYLAFAPDTEETRTMINLMSIKFPKLKLVSRIYK 119
MFVE+GKG VSP+F Q LEL+LAKGEYLAFAPDT+ETR MINLMSIKFP LKLV+R+YK
Sbjct: 61 GMFVEVGKGDVSPSFGQVLELLLAKGEYLAFAPDTKETRMMINLMSIKFPLLKLVTRVYK 120
Query: 120 DELELETYIRSDLYGTCSQVKDCLNPKIKGAVVFHDQGPELFDYSIRLNHTWAFSGFPDV 179
DELEL+TYIRSDLYGTC+QVK+C NPKIKGAVVFHDQGP +FDYSIRLNH+WAFSGFPDV
Sbjct: 121 DELELDTYIRSDLYGTCNQVKNCSNPKIKGAVVFHDQGPLVFDYSIRLNHSWAFSGFPDV 180
Query: 180 KTIMDTNGPYLNDLELGVNIIPTMQYSFSGFLTLQQVLDSFIIFAAQQTGANVATENVEI 239
KTIMDTNGPYLNDLELGV+ +PT+QYSFSGFLTLQQVLDSFIIFAAQQ AN+ EN+E+
Sbjct: 181 KTIMDTNGPYLNDLELGVDAVPTLQYSFSGFLTLQQVLDSFIIFAAQQNEANMVNENIEL 240
Query: 240 PPSNLSGTHLSLKQPWTLYSPSNIRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPIS 299
P S T L +KQ W + PSNI++VPFPTREYTDDEFQSIIK VMG+LYLLGFLYPIS
Sbjct: 241 P----SNTSL-IKQSWMQFIPSNIKIVPFPTREYTDDEFQSIIKSVMGLLYLLGFLYPIS 295
Query: 300 RLISYSVFEKEQKIREGLYMMGLKDGIFHLSWFITYAAQFAVSSGIITACTMDSLFKYSD 359
RLISYSVFEKEQKI+E LYMMGLKD IFHLSWFITYA QFAV+SGIITACTMD+LF+YSD
Sbjct: 296 RLISYSVFEKEQKIKESLYMMGLKDEIFHLSWFITYALQFAVTSGIITACTMDTLFQYSD 355
Query: 360 KTVVFTYFFSFGLSAITLSFFISTFFARAKTAVAVGTLSFLGAFFPYYTVNDEAVPMVLK 419
K++VF YFF FGLSAI LSF ISTFF RAKTAVAVGTLSFLGAFFPYYTVND+AVPM+LK
Sbjct: 356 KSLVFIYFFLFGLSAIMLSFLISTFFTRAKTAVAVGTLSFLGAFFPYYTVNDQAVPMILK 415
Query: 420 VIASLLSPTAFALGSVNFADYERAHVGLRWSNMWRASSGVNFLVCLLMMLLDTLLYGVIG 479
IASLLSPTAFALGS+NFADYERA+VGLRWSN+WRASSGVNFL CLLMMLLD LLY IG
Sbjct: 416 FIASLLSPTAFALGSINFADYERAYVGLRWSNVWRASSGVNFLACLLMMLLDALLYCAIG 475
Query: 480 LYLDKVLPKENGVRYRWNFIFQNCFRRKKSVIKHHVSSAEVKINKKLSKEKECAFALDAC 539
LYLDKVLP+ENGVR WNF F C RK+S IKH S + K +++ K C+ D
Sbjct: 476 LYLDKVLPRENGVRSPWNFPFLKCSWRKRSSIKHEDCSFDFKNDRR--KVNFCSN--DIS 531
Query: 540 EPVVEAISLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNG 599
P VEAISLDMKQQE+DGRCIQIR LHKVYATK+GNCCAVNSL+LTLYENQILALLGHNG
Sbjct: 532 GPAVEAISLDMKQQELDGRCIQIRNLHKVYATKKGNCCAVNSLRLTLYENQILALLGHNG 591
Query: 600 AGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEM 659
AGKSTTISMLVGL+PPT+GDALVFGKNI +MDEIRK LGVCPQ DILFPELTV+EHLE+
Sbjct: 592 AGKSTTISMLVGLLPPTSGDALVFGKNIITEMDEIRKQLGVCPQNDILFPELTVKEHLEI 651
Query: 660 FAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 719
FA+LKGV E LES V EMVDEVGLADKVN VV ALSGGMKRKLSLGIALIG+SKV++LD
Sbjct: 652 FAILKGVTENFLESAVTEMVDEVGLADKVNTVVGALSGGMKRKLSLGIALIGNSKVIVLD 711
Query: 720 EPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLF 779
EPTSGMDPYSMRLTWQLIK+IKKGRIILLTTHSMDEA+ LGDRIAIMANGSLKCCGSSLF
Sbjct: 712 EPTSGMDPYSMRLTWQLIKRIKKGRIILLTTHSMDEADVLGDRIAIMANGSLKCCGSSLF 771
Query: 780 LKHQYGVGYTLTLVKSAPDASAAADIVYRHIPSALCVSEVGTEITFKLPLASSSSFESMF 839
LKHQYGVGYTLTLVKSAP AS AADIVYRH+PSA CVSEVGTEI+FKLPL+SSSSFESMF
Sbjct: 772 LKHQYGVGYTLTLVKSAPSASIAADIVYRHVPSATCVSEVGTEISFKLPLSSSSSFESMF 831
Query: 840 REIESCIRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFLRVAGCNLDESECISQRNN 899
REIESC+ SV + ED LGIES+GISVTTLEEVFLRVAGC+ DE+EC Q
Sbjct: 832 REIESCM-NSVHNSDRSGNEDKYNLGIESYGISVTTLEEVFLRVAGCDFDETECSKQEKL 890
Query: 900 LVTLD-YVSAESDDQAPKRISNCKLFGNYKWVFGFIVTVVQRACTLIVAAVLGFLNFLIK 958
V D VS S + APK+I + K G YK + G + T+V+RAC+LI AAVL F+NF
Sbjct: 891 HVLPDSVVSQASPNHAPKQIFHSKPLGKYK-IIGVVSTIVERACSLIFAAVLSFINFFSV 949
Query: 959 KCCTCCIISRSMFWQHCKALFIKRAVSARRDRKTIVFQLLIPAIFLLVGLLFLKLKPHPD 1018
+CC+CC IS+S+FW+H KAL IKRA+ ARRDRKTIVFQLLIPA+FLL GLL LKLKPHPD
Sbjct: 950 QCCSCCFISKSIFWEHSKALLIKRAIIARRDRKTIVFQLLIPAVFLLFGLLLLKLKPHPD 1009
Query: 1019 MLSVTFTTSNFNPLLSGGGGGGPIPFDLSWPIANEVSKYIQGGWIQRFKQSSYRFPNAEK 1078
SVTFTTS+FNPLL GGGGGGPIPFDLSWPIA EV+ Y++GGWIQRFK ++YRFP+ +K
Sbjct: 1010 QQSVTFTTSHFNPLLRGGGGGGPIPFDLSWPIAKEVAWYVEGGWIQRFKPTTYRFPDPDK 1069
Query: 1079 ALADAVDAAGPTLGPVLLSMSEYLMSSFNESYQSRYGAIVMDDQNDDGSLGFTVLHNSSC 1138
ALADA++AAGPTLGP LLSMSE+LMSSFNESYQSRYGA+VMDDQN DGSLG+TVLHN SC
Sbjct: 1070 ALADAIEAAGPTLGPTLLSMSEFLMSSFNESYQSRYGAVVMDDQNKDGSLGYTVLHNGSC 1129
Query: 1139 QHAGPTFINVMNTAILRLATGNRNMTIRTRNHPLPTTQSQQLQRHDLDAFSVSIIISIAF 1198
QHA PTFIN+MN AILR AT N+NMTI+TRNHPLP T+SQ LQRHDLDAFS ++I++IA
Sbjct: 1130 QHAAPTFINLMNAAILRFATLNKNMTIQTRNHPLPMTKSQHLQRHDLDAFSAAVIVNIAL 1189
Query: 1199 SFIPASFAVAIVKEREVKAKQQQLISGVSVLSYWTSTYIWDFISFLFPSSCAIILFYIF- 1257
SF+PASFAV+IVKEREVKAK QQLISGVSVLSYW STY+WDF+SFL PSS AI LFYIF
Sbjct: 1190 SFVPASFAVSIVKEREVKAKHQQLISGVSVLSYWASTYLWDFVSFLLPSSFAITLFYIFD 1249
Query: 1258 --------GLDQFVGRGCLLPTVLIFLGYGLAIASSTYCLTFFF 1293
GL ++ LL ++ + + Y A + Y L + F
Sbjct: 1250 STFSYDRCGLTHYI----LLSSIKLVVYYSTLHALNRYSLIYIF 1289
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302810659|ref|XP_002987020.1| hypothetical protein SELMODRAFT_446818 [Selaginella moellendorffii] gi|300145185|gb|EFJ11863.1| hypothetical protein SELMODRAFT_446818 [Selaginella moellendorffii] | Back alignment and taxonomy information |
|---|
Score = 1906 bits (4937), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 977/1820 (53%), Positives = 1268/1820 (69%), Gaps = 106/1820 (5%)
Query: 1 MGTAKRHLKAMLRKNWLLKVRHPFVTAAEILLPTVVMLLLIAVRTRVDTRIHPAQPYIRK 60
M R L++ML KNWLLK+RHP T E++LP +MLLL+A+R+RVD HP YI++
Sbjct: 1 MALQWRQLRSMLWKNWLLKLRHPVATLLEVVLPATIMLLLMAIRSRVDFHTHPPSAYIKE 60
Query: 61 DMFVEIGKG-VSPNFVQALELMLAKGEYLAFAPDTEETRTMINLMSIKFPKLKLVSRIYK 119
MFV +G +SP+F L+ A GE++AF P++E T TM++L+S+KFP L+ V++IYK
Sbjct: 61 GMFVGVGSSKISPSFEAVLQFCEANGEHIAFVPESEGTSTMVDLLSLKFPLLQTVAKIYK 120
Query: 120 DELELETYIRSDLYGTCSQVKDCLNPKIKGAVVFHDQGPELFDYSIRLNHTWAFSGFPDV 179
DE L +YI+S YGT + L PKIK AVVF +QGP +DYSIRLNH+WAF GFPDV
Sbjct: 121 DEETLHSYIKSKTYGTGKK----LYPKIKAAVVFFEQGPCTYDYSIRLNHSWAFQGFPDV 176
Query: 180 KTIMDTNGPYLNDLELGVNIIPTMQYSFSGFLTLQQVLDSFIIFAAQQTGANVATENVEI 239
+TIMDT G Y++DL LGV+++ T +Y +SGFLTLQQV+DS++I +QQ E+ +
Sbjct: 177 RTIMDTTGAYVDDLILGVDLVSTYEYGYSGFLTLQQVIDSYLILLSQQQPELCHYESRKR 236
Query: 240 PPSNLSGTHLSLKQPWTLYSPSNIRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPIS 299
N S H ++K P I + PFPTREYTDDEFQSI+K +G+LYLL FLYP+S
Sbjct: 237 VLKNES--HENVKLVTENVFPKYISVAPFPTREYTDDEFQSIVKNFLGILYLLAFLYPVS 294
Query: 300 RLISYSVFEKEQKIREGLYMMGLKDGIFHLSWFITYAAQFAVSSGIITACTMDSLFKYSD 359
RLIS SV EKE+ I+EG+ MMGL+ F++SWFI Y QFAVSS II TM+S+F YS
Sbjct: 295 RLISCSVLEKEKGIKEGMLMMGLEGTNFYVSWFIIYMLQFAVSSLIIVLVTMNSIFAYSS 354
Query: 360 KTVVFTYFFSFGLSAITLSFFISTFFARAKTAVAVGTLSFLGAFFPYYTVNDEAVPMVLK 419
+VVF YFF FGLSAI L F IS FF RAKTA AVGTLSFL AFFPYY V D V + +K
Sbjct: 355 MSVVFVYFFLFGLSAIALCFLISVFFTRAKTATAVGTLSFLAAFFPYYVVVDTDVSLSIK 414
Query: 420 VIASLLSPTAFALGSVNFADYERAHVGLRWSNMWRASSGVNFLVCLLMMLLDTLLYGVIG 479
+IASLLSPTAFALG+VNFADYER HVG+RWSN+W+ SSGV+FL+C++ + +D LLY V+
Sbjct: 415 LIASLLSPTAFALGTVNFADYERGHVGVRWSNIWKESSGVSFLLCMVFLAVDALLYLVLA 474
Query: 480 LYLDKVLPKENG---VRYRWNFIFQNCFRRKKSVIKHHVSSAEVKINKKLSKEKECAFAL 536
Y ++VL G R WN C ++ + + +
Sbjct: 475 WYFNQVLKHSCGYLTCRMLWNL----CRCKRNNEEMDEENEDMI---------------- 514
Query: 537 DACEPVVEAISLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLG 596
P E + QQE D +C+ I+ L KV+ T C AVNSL L+L E QILALLG
Sbjct: 515 ----PQSEIEPFEFDQQEFD-KCVHIKNLRKVFVTAGRECTAVNSLSLSLCEGQILALLG 569
Query: 597 HNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREH 656
HNGAGKSTTI MLVGL+ PT+GDA V GK+I DM IRK +GVCPQ D+LF ELTVREH
Sbjct: 570 HNGAGKSTTIGMLVGLVAPTSGDAFVLGKSIKTDMMHIRKQIGVCPQNDLLFQELTVREH 629
Query: 657 LEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVV 716
L +F LK V +L++ V M+ E+GL DK + +V LSGGMKRKLS+ +AL+G SKVV
Sbjct: 630 LLLFGSLKSVDPSVLQTEVDSMISEIGLLDKSDALVGHLSGGMKRKLSVALALLGGSKVV 689
Query: 717 ILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
ILDEPTSGMDPYSMRLTW+L+K+ KK RIILLTTHSMDEA+ LGDRIAIM++G+L+CCGS
Sbjct: 690 ILDEPTSGMDPYSMRLTWRLLKRHKKDRIILLTTHSMDEADVLGDRIAIMSSGNLRCCGS 749
Query: 777 SLFLKHQYGVGYTLTLVKSAPDASAAADIVYRHIPSALCVSEVGTEITFKLPLASSSSFE 836
SLFLKH+YGVGYTLTLVK + ++ + RH+PSA +S+VG+E++++LPLAS+S+F
Sbjct: 750 SLFLKHRYGVGYTLTLVKGQSGTESISEAILRHVPSATLLSDVGSELSYRLPLASTSTFH 809
Query: 837 SMFREIESCIRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFLRVAG----------- 885
+F E+E+ S + + +ES+GISVTTLEEVFLRVA
Sbjct: 810 LLFEELEAHATLSDLSGSGEEPGGINSWDVESYGISVTTLEEVFLRVASGEAPQQEVRPL 869
Query: 886 ---CNLDESECISQRNNLVTLDYVSAESDDQAPK-RISNCKLFGNYKWVFGFIVTVVQRA 941
CN + SE N + D + +S+D A + + Y W+ +
Sbjct: 870 QKTCNAEASEA----NASCSDDRIDVDSEDGAASFEVKKSR----YSWI---------SS 912
Query: 942 CTLIVAAVLGFLNFLIKKCCTCCI-ISRSMFWQHCKALFIKRAVSARRDRKTIVFQLLIP 1000
C I+ VL L + ++ + RS+F +H +ALF KR +SA RD+KT+VFQLL+P
Sbjct: 913 CVGIITRVLASLVSVFERYPIIHLGKRRSLFGRHFRALFKKRGLSAMRDKKTVVFQLLVP 972
Query: 1001 AIFLLVGLLFLKLKPHPDMLSVTFTTSNFNPLLSGGGGGGPIPFDLSWPIANEVSKYIQG 1060
++FL +GLL L KPHPD SVT TTS FNPL++G GGGGPIPF+L+ PIA +V++Y+ G
Sbjct: 973 SLFLFLGLLLLTTKPHPDQPSVTLTTSLFNPLVTGSGGGGPIPFNLTLPIAQKVARYVSG 1032
Query: 1061 GWIQRFKQSSYRFPNAEKALADAVDAAGPTLGPVLLSMSEYLMSSFNESYQSRYGAIVMD 1120
GWIQ+ + Y+FP+++ L +A+DAAGP+LGP L+SMSEYLM+SFNE+Y+SRYGA+VMD
Sbjct: 1033 GWIQKEEPRVYKFPDSDTVLQNAIDAAGPSLGPALVSMSEYLMTSFNETYESRYGAVVMD 1092
Query: 1121 DQNDDGSLGFTVLHNSSCQHAGPTFINVMNTAILRLATGNRNMTIRTRNHPLPTTQSQQL 1180
Q+ DGSL + VLHN++CQHA PT+INV+N AIL++AT N + +RTRNHPLP T SQ
Sbjct: 1093 RQHSDGSLAYAVLHNTTCQHAAPTYINVVNNAILKMATNNSKLELRTRNHPLPMTVSQMA 1152
Query: 1181 QRHDLDAFSVSIIISIAFSFIPASFAVAIVKEREVKAKQQQLISGVSVLSYWTSTYIWDF 1240
QR D++AFS II+++A+SFIPASFAVAIVKEREVKAK QQLISGVS+++YW STY+WD
Sbjct: 1153 QRRDINAFSAGIIVNVAYSFIPASFAVAIVKEREVKAKHQQLISGVSLMAYWISTYVWDV 1212
Query: 1241 ISFLFPSSCAIILFYIFGLDQFVGRGCLLPTVLIFLGYGLAIASSTYCLTFFFSDHTMAQ 1300
+S+L P+ A+ LF+IFG+++F+G+ +L T ++ + YG AIA+STYCLTFFF+DH++AQ
Sbjct: 1213 LSYLLPAGLAVGLFFIFGMEEFIGKESILATSIMMVAYGPAIAASTYCLTFFFTDHSLAQ 1272
Query: 1301 NVVLLVHFFTGLILMVISFIMGLLEATRSANSLLK--------NFFRLSPGFCFADGLAS 1352
NV+LL+HFF+GLILMV+SFIMG+L AT+ N +LK N FRLSPGFC ADGLAS
Sbjct: 1273 NVILLIHFFSGLILMVVSFIMGVLRATKGVNRVLKVIKKNFEQNIFRLSPGFCLADGLAS 1332
Query: 1353 LALLRQGMKDKTSDGVFDWNVTSASICYLGCESICYFLLTLGLELLPS----HKWTLMTI 1408
LAL +Q +K + F WN T ASI YL CESI YFLL L +ELLPS W
Sbjct: 1333 LALRKQSLKPSSQKEPFAWNTTGASITYLCCESILYFLLVLAMELLPSPYILTAWCKSCF 1392
Query: 1409 KEWWKGTRHRLCNT--PSSYLEPLLQSSSESDTLDLNEDIDVQVERNRVLSGSVDNAIIY 1466
+W R+ N+ + EP L D ED+DV ER RV SG ++++
Sbjct: 1393 GKW---RRNLFANSGRAGTLSEPFLPEEHLED-----EDLDVARERRRVQSGGSKDSVVK 1444
Query: 1467 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1526
L LRK +P G R KVAV +L+F+V AGECFGFLGTNGAGKTTTLSM+ GE P++G
Sbjct: 1445 LVELRKTFPCGARQPPKVAVDALSFAVDAGECFGFLGTNGAGKTTTLSMLCGEFPPSEGN 1504
Query: 1527 AFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKL 1586
A+I G D+ S+P R+LIGYCPQFDALL+ LTV+EHLELYA IK V E +++ VV EKL
Sbjct: 1505 AYIVGHDVWSNPADTRQLIGYCPQFDALLDLLTVREHLELYANIKAVPEDKLEQVVQEKL 1564
Query: 1587 VEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISR 1646
EFDL A K + +LSGGNKRKLSVAIAM+ DPPIVILDEPSTGMDP+A+RFMW+VI+R
Sbjct: 1565 TEFDLWGQAHKTASSLSGGNKRKLSVAIAMVADPPIVILDEPSTGMDPVARRFMWDVITR 1624
Query: 1647 LSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTE 1706
+STR+G +AVILTTHSM EAQALCTRIGIM G+LRC+GSPQHLK+RFGN LELEVK
Sbjct: 1625 ISTRRGLSAVILTTHSMAEAQALCTRIGIMAAGRLRCLGSPQHLKSRFGNSLELEVKAVT 1684
Query: 1707 VSSVDLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSENATAAEISLSQEMLLI 1766
+ +++ L + + + D ++ ++ ++ + +AT +E ++ +
Sbjct: 1685 TTQSEVDKLSHFVLQNLPDSDARETEII-----------ALDNSDATLSETEVTAAAFI- 1732
Query: 1767 VGRWLGNEERIKTLISSSSS 1786
LGNE+ + L+S +S
Sbjct: 1733 ----LGNEQWGQALLSGHAS 1748
|
Source: Selaginella moellendorffii Species: Selaginella moellendorffii Genus: Selaginella Family: Selaginellaceae Order: Selaginellales Class: Isoetopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1833 | ||||||
| TAIR|locus:2054366 | 1882 | ABCA1 "ATP-binding cassette A1 | 0.973 | 0.947 | 0.699 | 0.0 | |
| ZFIN|ZDB-GENE-050517-1 | 2503 | abca2 "ATP-binding cassette, s | 0.335 | 0.245 | 0.356 | 4.6e-183 | |
| UNIPROTKB|Q9BZC7 | 2435 | ABCA2 "ATP-binding cassette su | 0.341 | 0.257 | 0.348 | 4.2e-178 | |
| UNIPROTKB|J3QSS3 | 2436 | ABCA2 "ATP-binding cassette su | 0.341 | 0.256 | 0.348 | 4.2e-178 | |
| RGD|620238 | 2434 | Abca2 "ATP-binding cassette, s | 0.342 | 0.257 | 0.345 | 1.2e-177 | |
| UNIPROTKB|F1RFA0 | 1702 | ABCA3 "Uncharacterized protein | 0.308 | 0.331 | 0.349 | 1.7e-175 | |
| UNIPROTKB|F1Q1F1 | 1702 | ABCA3 "Uncharacterized protein | 0.302 | 0.326 | 0.378 | 2.2e-169 | |
| UNIPROTKB|Q99758 | 1704 | ABCA3 "ATP-binding cassette su | 0.310 | 0.333 | 0.373 | 2.6e-168 | |
| UNIPROTKB|E1BCR1 | 1704 | ABCA3 "Uncharacterized protein | 0.303 | 0.326 | 0.376 | 1.2e-173 | |
| MGI|MGI:1351617 | 1704 | Abca3 "ATP-binding cassette, s | 0.303 | 0.326 | 0.374 | 1.3e-173 |
| TAIR|locus:2054366 ABCA1 "ATP-binding cassette A1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 6477 (2285.1 bits), Expect = 0., P = 0.
Identities = 1266/1810 (69%), Positives = 1472/1810 (81%)
Query: 1 MGTAKRHLKAMLRKNWLLKVRHPFVTAAEILLPTVVMLLLIAVRTRVDTRIHPAQPYIRK 60
MG++KR KAMLRKNWLLK RHPFVT+AEILLPT+VMLLLIAVRTRVDT IHPA I K
Sbjct: 1 MGSSKRQFKAMLRKNWLLKTRHPFVTSAEILLPTIVMLLLIAVRTRVDTTIHPAHSNIDK 60
Query: 61 DMFVEIGKGVSPNFVQALELMLAKGEYLAFAPDTEETRTMINLMSIKFPKLKLVSRIYKD 120
D VE+GKG SP+F + L+L+LA+G++LAFAPDT+ET MI+++S+KFP+L+LV++I+KD
Sbjct: 61 DTVVEVGKGNSPSFPEVLKLLLAEGDFLAFAPDTDETNNMIDILSLKFPELRLVTKIFKD 120
Query: 121 ELELETYIRSDLYGTCSQVKDCLNPKIKGAVVFHDQGPELFDYSIRLNHTWAFSGFPDVK 180
++ELETYI S YG CS+V++C NPKIKGAVVFH+QGP LFDYSIRLNHTWAF+GFP+VK
Sbjct: 121 DIELETYITSAHYGVCSEVRNCSNPKIKGAVVFHEQGPHLFDYSIRLNHTWAFAGFPNVK 180
Query: 181 TIMDTNGPYLNDLELGVNIIPTMQYSFSGFLTLQQVLDSFIIFAAQQTGANVATENVEIP 240
+IMDTNGPY+NDLE+G+N IPTMQYSFSGFLTLQQV+DSFIIFA+QQ ++ +
Sbjct: 181 SIMDTNGPYINDLEMGINTIPTMQYSFSGFLTLQQVVDSFIIFASQQNN------DLPLS 234
Query: 241 PSNLSGTHLSLKQPWTLYSPSNIRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISR 300
SNLS L + PWTL+SPS IRMVPFPTREYTDDEFQSI+K VMG+LYLLGFL+PISR
Sbjct: 235 HSNLSSA-LRFELPWTLFSPSVIRMVPFPTREYTDDEFQSIVKSVMGLLYLLGFLFPISR 293
Query: 301 LISYSVFEKEQKIREGLYMMGLKDGIFHLSWFITYAAQFAVSSGIITACTMDSLFKYSDK 360
LISYSVFEKEQKIREGLYMMGLKD IFHLSWFITYA QFA+ SGIITACTM SLFKYSDK
Sbjct: 294 LISYSVFEKEQKIREGLYMMGLKDEIFHLSWFITYALQFALCSGIITACTMGSLFKYSDK 353
Query: 361 TVVFTYFFSFGLSAITLSFFISTFFARAKTAVAVGTLSFLGAFFPYYTVNDEAVPMVLKV 420
T+VFTYFF FGLSAI LSF ISTFF RAKTAVAVGTL+FLGAFFPYYTVNDE+V MVLKV
Sbjct: 354 TLVFTYFFLFGLSAIMLSFMISTFFTRAKTAVAVGTLTFLGAFFPYYTVNDESVSMVLKV 413
Query: 421 IASLLSPTAFALGSVNFADYERAHVGLRWSNMWRASSGVNFXXXXXXXXXXXXXYGVIGL 480
+ASLLSPTAFALGS+NFADYERAHVGLRWSN+WRASSGV+F Y +GL
Sbjct: 414 VASLLSPTAFALGSINFADYERAHVGLRWSNIWRASSGVSFFVCLLMMLLDSILYCALGL 473
Query: 481 YLDKVLPKENGVRYRWNFIFQNCFRRKKSVIKHHVSSAEVKINKKLSKEKECAFALDACE 540
YLDKVLP+ENGVRY WNFIF F RKK+ +++ + E + + E + +
Sbjct: 474 YLDKVLPRENGVRYPWNFIFSKYFGRKKNNLQNRIPGFETDM---FPADIEVNQG-EPFD 529
Query: 541 PVVEAISLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGA 600
PV E+ISL+M+QQE+DGRCIQ+R LHKVYA++RGNCCAVNSLQLTLYENQIL+LLGHNGA
Sbjct: 530 PVFESISLEMRQQELDGRCIQVRNLHKVYASRRGNCCAVNSLQLTLYENQILSLLGHNGA 589
Query: 601 GKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMF 660
GKSTTISMLVGL+PPT+GDAL+ G +I +MDEIRK LGVCPQ+DILFPELTVREHLEMF
Sbjct: 590 GKSTTISMLVGLLPPTSGDALILGNSIITNMDEIRKELGVCPQHDILFPELTVREHLEMF 649
Query: 661 AVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDE 720
AVLKGV+E L+S V +M +EVGL+DK+N +VRALSGGMKRKLSLGIALIG+SKV+ILDE
Sbjct: 650 AVLKGVEEGSLKSTVVDMAEEVGLSDKINTLVRALSGGMKRKLSLGIALIGNSKVIILDE 709
Query: 721 PTSGMDPYSMRLTWQXXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSLKCCGSSLFL 780
PTSGMDPYSMRLTWQ TTHSMDEAEELGDRI IMANGSLKCCGSS+FL
Sbjct: 710 PTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIGIMANGSLKCCGSSIFL 769
Query: 781 KHQYGVGYTLTLVKSAPDASAAADIVYRHIPSALCVSEVGTEITFKLPLASSSSFESMFR 840
KH YGVGYTLTLVK++P S AA IV+RHIPSA CVSEVG EI+FKLPLAS FE+MFR
Sbjct: 770 KHHYGVGYTLTLVKTSPTVSVAAHIVHRHIPSATCVSEVGNEISFKLPLASLPCFENMFR 829
Query: 841 EIESCIRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFLRVAGCNLD---ESECI--- 894
EIESC++ SV + + ED+DY GI+S+GISVTTLEEVFLRVAGCNLD + E I
Sbjct: 830 EIESCMKNSVDRSKISEIEDSDYPGIQSYGISVTTLEEVFLRVAGCNLDIEDKQEDIFVS 889
Query: 895 -SQRNNLVTLDYVSAESDDQAPKRISNCKLFGNYKWVFGFIVTVVQRACTLIVAAVLGFL 953
+++LV + S + PK +++C G G I+T V +A LIVAAV +
Sbjct: 890 PDTKSSLVCIG--SNQKSSMQPKLLASCN-DGA-----GVIITSVAKAFRLIVAAVWTLI 941
Query: 954 NFLIKKCCTCCIISRSMFWQHCKALFIKRAVSARRDRKTIVFQLLIPAIXXXXXXXXXXX 1013
F+ +CC C IISRSMFW+HCKALFIKRA SA RDRKT+ FQ +IPA+
Sbjct: 942 GFISIQCCGCSIISRSMFWRHCKALFIKRARSACRDRKTVAFQFIIPAVFLLFGLLFLQL 1001
Query: 1014 XPHPDMLSVTFTTSNFNPLLSXXXXXXPIPFDLSWPIANEVSKYIQGGWIQRFKQSSYRF 1073
PHPD S+T TT+ FNPLLS PIPFDLS PIA EV++YI+GGWIQ + +SY+F
Sbjct: 1002 KPHPDQKSITLTTAYFNPLLSGKGGGGPIPFDLSVPIAKEVAQYIEGGWIQPLRNTSYKF 1061
Query: 1074 PNXXXXXXXXXXXXGPTLGPVLLSMSEYLMSSFNESYQSRYGAIVMDDQNDDGSLGFTVL 1133
PN GPTLGP LLSMSE+LMSSF++SYQSRYG+I+MD Q+ DGSLG+TVL
Sbjct: 1062 PNPKEALADAIDAAGPTLGPTLLSMSEFLMSSFDQSYQSRYGSILMDGQHPDGSLGYTVL 1121
Query: 1134 HNSSCQHAGPTFINVMNTAILRLATGNRNMTIRTRNHPLPTTQSQQLQRHDLDXXXXXXX 1193
HN +CQHAGP +INVM+ AILRLATGN+NMTI+TRNHPLP T++Q++QRHDLD
Sbjct: 1122 HNGTCQHAGPIYINVMHAAILRLATGNKNMTIQTRNHPLPPTKTQRIQRHDLDAFSAAII 1181
Query: 1194 XXXXXXXXXXXXXXXXVKEREVKAKQQQLISGVSVLSYWTSTYIWDFISFLFPSSCAIIL 1253
VKEREVKAK QQLISGVSVLSYW STY+WDFISFLFPS+ AIIL
Sbjct: 1182 VNIAFSFIPASFAVPIVKEREVKAKHQQLISGVSVLSYWLSTYVWDFISFLFPSTFAIIL 1241
Query: 1254 FYIFGLDQFVGRGCLLPTVLIFLGYGLAIASSTYCLTFFFSDHTMAQNVVLLVHFFTGLI 1313
FY FGL+QF+G G LPTVL+ L YGLAIASSTYCLTFFF++H+MAQNV+L+VHFF+GLI
Sbjct: 1242 FYAFGLEQFIGIGRFLPTVLMLLEYGLAIASSTYCLTFFFTEHSMAQNVILMVHFFSGLI 1301
Query: 1314 LMVISFIMGLLEATRSANSLLKNFFRLSPGFCFADGLASLALLRQGMKDKTSDGVFDWNV 1373
LMVISF+MGL+ AT SANS LKNFFRLSPGFCF+DGLASLALLRQGMKDK+S GVF+WNV
Sbjct: 1302 LMVISFVMGLIPATASANSYLKNFFRLSPGFCFSDGLASLALLRQGMKDKSSHGVFEWNV 1361
Query: 1374 TSASICYLGCESICYFLLTLGLELLPSHKWTLMTIKEWWKGTRHRLCNTPSSYLEPLLQS 1433
T ASICYLG ESI YFL+TLGLEL+P K +I EWW+ + SS EPLL+
Sbjct: 1362 TGASICYLGLESIFYFLVTLGLELMPVQKVMSFSIGEWWQNLKAFKQGAGSSSTEPLLKD 1421
Query: 1434 SSESDTLDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSV 1493
S+ + + D+ +DIDVQ ER+RV+SG DN ++YL+NLRKVYPG K KVAV SLTFSV
Sbjct: 1422 STGAISTDMEDDIDVQEERDRVISGLSDNTMLYLQNLRKVYPGDKHHGPKVAVQSLTFSV 1481
Query: 1494 QAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDA 1553
QAGECFGFLGTNGAGKTTTLSM+SGEE PT GTAFIFGKDI + PKA R+ IGYCPQFDA
Sbjct: 1482 QAGECFGFLGTNGAGKTTTLSMLSGEETPTSGTAFIFGKDIVASPKAIRQHIGYCPQFDA 1541
Query: 1554 LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVA 1613
L EYLTV+EHLELYARIKGV ++R+D+VV EKLVEFDLLKH+ KPSFTLSGGNKRKLSVA
Sbjct: 1542 LFEYLTVKEHLELYARIKGVVDHRIDNVVTEKLVEFDLLKHSHKPSFTLSGGNKRKLSVA 1601
Query: 1614 IAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRI 1673
IAMIGDPPIVILDEPSTGMDP+AKRFMW+VISRLSTR GKTAVILTTHSMNEAQALCTRI
Sbjct: 1602 IAMIGDPPIVILDEPSTGMDPVAKRFMWDVISRLSTRSGKTAVILTTHSMNEAQALCTRI 1661
Query: 1674 GIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSL 1733
GIMVGG+LRCIGSPQHLKTR+GN LELEVKP EVS+V+LE+ CQIIQ+ +F++P+Q RSL
Sbjct: 1662 GIMVGGRLRCIGSPQHLKTRYGNHLELEVKPNEVSNVELENFCQIIQQWLFNVPTQPRSL 1721
Query: 1734 LDDLEVCIGGIDSISSENATAAEISLSQEMLLIVGRWLGNEERIKTLISSSSSPDRIFGE 1793
L DLEVCIG DSI+ + A+A+EISLS EM+ + ++LGNE+R+ TL+ D F +
Sbjct: 1722 LGDLEVCIGVSDSITPDTASASEISLSPEMVQRIAKFLGNEQRVSTLVPPLPEEDVRFDD 1781
Query: 1794 QLSEQLVRDG 1803
QLSEQL RDG
Sbjct: 1782 QLSEQLFRDG 1791
|
|
| ZFIN|ZDB-GENE-050517-1 abca2 "ATP-binding cassette, sub-family A (ABC1), member 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 969 (346.2 bits), Expect = 4.6e-183, Sum P(6) = 4.6e-183
Identities = 230/645 (35%), Positives = 365/645 (56%)
Query: 260 PSN-IRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLY 318
P N ++M P+P YT D+F +I+ +M + ++ ++Y ++ +I + V EKEQ+++E +
Sbjct: 735 PGNYVQMFPYPC--YTRDDFLFVIEHMMPLCMVISWVYSVAMMIQHIVAEKEQRLKEVMK 792
Query: 319 MMGLKDGIFHLSWFITYAAQFAVSSGIITACTM-DSLFKYSDKTVVFTYFFSFGLSAITL 377
MMGL + + ++WFIT Q ++S +TA + +SD +++ + + ++ I
Sbjct: 793 MMGLNNAVHWVAWFITGFVQLSISVTALTAILKYGKVLLHSDPFIIWLFLTIYAVATIMF 852
Query: 378 SFFISTFFARAKTAVAVGTLSFLGAFFPY-YT-VNDEA----VPMVLKVIASLLSPTAFA 431
F +S +++AK A A G + + ++ PY Y + +E + K IASL+S TAF
Sbjct: 853 CFLVSVLYSKAKLASACGGIIYFLSYVPYMYVAIREEVAHDKITAFEKCIASLMSTTAFG 912
Query: 432 LGSVNFADYERAHVGLRWSNMWRA---SSGVNFXXXXXXXXXXXXXYGVIGLYLDKVLPK 488
LGS FA YE A VG++W + ++ N YGV+ Y++ V P
Sbjct: 913 LGSKYFALYEVAGVGIQWRTINQSPVEGDDFNLLLSMVMLTIDAIVYGVLTWYIEAVHPG 972
Query: 489 ENGVRYRWNFIFQNCFRRKKSVIK--HHVSSAEVKINKKLSKEKECAFALDACEPVVEAI 546
G+ W F Q + I+ +++ + +++ CA E E
Sbjct: 973 MYGLPRPWYFPLQKSYWLGSGRIETWEWPWGGGTRLSV-MEEDQACAMEHRRSE---ETR 1028
Query: 547 SLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTI 606
++ + + + I KL KVY T G+ A+N L L L+ENQ+++ LGHNGAGK+TT+
Sbjct: 1029 GIEEEPNHLP-LVVCIDKLTKVYKT--GSKLALNKLSLNLHENQVVSFLGHNGAGKTTTM 1085
Query: 607 SMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV 666
S+L GL PPT+G A ++G +I +M+ IR+ LG+CPQ+++LF +L+V EHL ++ LKG+
Sbjct: 1086 SILTGLFPPTSGSATIYGHDIRTEMERIRQNLGMCPQHNVLFDKLSVEEHLWFYSRLKGM 1145
Query: 667 KEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 726
EE + + +M++++ L++K + +V+ LSGGMKRKLS+ IA +G S+ VILDEPT+G+D
Sbjct: 1146 AEEDIRKEMDKMIEDLELSNKRHSLVQTLSGGMKRKLSVAIAFVGGSRAVILDEPTAGVD 1205
Query: 727 PYSMRLTWQXXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGV 786
PY+ R W +TH MDEA+ LGDRIAI+++G LKCCGS LFLK YG
Sbjct: 1206 PYARRAIWDLILKYKQGRTILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKSTYGD 1265
Query: 787 GYTLTLVKSAPDASAAADIVYRHIPSAL--C----VSEVGTEITFKLPLASSSSFESMFR 840
GY LTLVK D S AD + S++ C V++ + L S S+ E +
Sbjct: 1266 GYKLTLVKKQSD-SHTADQSSQSPSSSISPCSENRVTQFIRQYVASCLLVSDSNTELSYV 1324
Query: 841 EIESCIRKSVSKVEADATEDT-DYLGIESFGISVTTLEEVFLRVA 884
++K + A E + D L + SFG+ TTLEEVFL+V+
Sbjct: 1325 LPSEAVKKGCFERLFQALEQSLDSLALTSFGVMDTTLEEVFLKVS 1369
|
|
| UNIPROTKB|Q9BZC7 ABCA2 "ATP-binding cassette sub-family A member 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 937 (334.9 bits), Expect = 4.2e-178, Sum P(7) = 4.2e-178
Identities = 228/655 (34%), Positives = 357/655 (54%)
Query: 261 SNIRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLYMM 320
S ++M P+P YT D+F +I+ +M + ++ ++Y ++ I + V EKE +++E + M
Sbjct: 684 SYVQMFPYPC--YTRDDFLFVIEHMMPLCMVISWVYSVAMTIQHIVAEKEHRLKEVMKTM 741
Query: 321 GLKDGIFHLSWFITYAAQFAVSSGIITACTM-DSLFKYSDKTVVFTYFFSFGLSAITLSF 379
GL + + ++WFIT Q ++S +TA + +S +++ + + ++ I F
Sbjct: 742 GLNNAVHWVAWFITGFVQLSISVTALTAILKYGQVLMHSHVVIIWLFLAVYAVATIMFCF 801
Query: 380 FISTFFARAKTAVAVGTLSFLGAFFPY-YT-VNDEA----VPMVLKVIASLLSPTAFALG 433
+S +++AK A A G + + ++ PY Y + +E + K IASL+S TAF LG
Sbjct: 802 LVSVLYSKAKLASACGGIIYFLSYVPYMYVAIREEVAHDKITAFEKCIASLMSTTAFGLG 861
Query: 434 SVNFADYERAHVGLRWSNMWRA---SSGVNFXXXXXXXXXXXXXYGVIGLYLDKVLPKEN 490
S FA YE A VG++W ++ N YG++ Y++ V P
Sbjct: 862 SKYFALYEVAGVGIQWHTFSQSPVEGDDFNLLLAVTMLMVDAVVYGILTWYIEAVHPGMY 921
Query: 491 GVRYRWNFIFQNCFRRKKSVIKHHVSSAEVKINKKLS-KEKECAFALDACEPVVEAISLD 549
G+ W F Q + + S +LS E++ A A+++ E ++
Sbjct: 922 GLPRPWYFPLQKSYWLGSGRTEAWEWSWPWARTPRLSVMEEDQACAMES-RRFEETRGME 980
Query: 550 MKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISML 609
+ + + + KL KVY K A+N L L LYENQ+++ LGHNGAGK+TT+S+L
Sbjct: 981 EEPTHLP-LVVCVDKLTKVY--KDDKKLALNKLSLNLYENQVVSFLGHNGAGKTTTMSIL 1037
Query: 610 VGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEE 669
GL PPT+G A ++G +I +MDEIRK LG+CPQ+++LF LTV EHL ++ LK + +E
Sbjct: 1038 TGLFPPTSGSATIYGHDIRTEMDEIRKNLGMCPQHNVLFDRLTVEEHLWFYSRLKSMAQE 1097
Query: 670 LLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYS 729
+ + +M++++ L++K + +V+ LSGGMKRKLS+ IA +G S+ +ILDEPT+G+DPY+
Sbjct: 1098 EIRREMDKMIEDLELSNKRHSLVQTLSGGMKRKLSVAIAFVGGSRAIILDEPTAGVDPYA 1157
Query: 730 MRLTWQXXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYT 789
R W +TH MDEA+ LGDRIAI+++G LKCCGS LFLK YG GY
Sbjct: 1158 RRAIWDLILKYKPGRTILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGTYGDGYR 1217
Query: 790 LTLVK-----SAPDASAAADIVYRHIPSALC----VSEVGTEITFKLPLASSSSFE-SMF 839
LTLVK P A P + C VS+ + L S +S E S
Sbjct: 1218 LTLVKRPAEPGGPQEPGLASSPPGRAPLSSCSELQVSQFIRKHVASCLLVSDTSTELSYI 1277
Query: 840 REIESCIRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFLRVA--GCNLDESE 892
E+ + + ++ D L + SFG+ TTLEEVFL+V+ +L+ SE
Sbjct: 1278 LPSEAAKKGAFERLFQHLERSLDALHLSSFGLMDTTLEEVFLKVSEEDQSLENSE 1332
|
|
| UNIPROTKB|J3QSS3 ABCA2 "ATP-binding cassette sub-family A member 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 937 (334.9 bits), Expect = 4.2e-178, Sum P(7) = 4.2e-178
Identities = 228/655 (34%), Positives = 357/655 (54%)
Query: 261 SNIRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLYMM 320
S ++M P+P YT D+F +I+ +M + ++ ++Y ++ I + V EKE +++E + M
Sbjct: 685 SYVQMFPYPC--YTRDDFLFVIEHMMPLCMVISWVYSVAMTIQHIVAEKEHRLKEVMKTM 742
Query: 321 GLKDGIFHLSWFITYAAQFAVSSGIITACTM-DSLFKYSDKTVVFTYFFSFGLSAITLSF 379
GL + + ++WFIT Q ++S +TA + +S +++ + + ++ I F
Sbjct: 743 GLNNAVHWVAWFITGFVQLSISVTALTAILKYGQVLMHSHVVIIWLFLAVYAVATIMFCF 802
Query: 380 FISTFFARAKTAVAVGTLSFLGAFFPY-YT-VNDEA----VPMVLKVIASLLSPTAFALG 433
+S +++AK A A G + + ++ PY Y + +E + K IASL+S TAF LG
Sbjct: 803 LVSVLYSKAKLASACGGIIYFLSYVPYMYVAIREEVAHDKITAFEKCIASLMSTTAFGLG 862
Query: 434 SVNFADYERAHVGLRWSNMWRA---SSGVNFXXXXXXXXXXXXXYGVIGLYLDKVLPKEN 490
S FA YE A VG++W ++ N YG++ Y++ V P
Sbjct: 863 SKYFALYEVAGVGIQWHTFSQSPVEGDDFNLLLAVTMLMVDAVVYGILTWYIEAVHPGMY 922
Query: 491 GVRYRWNFIFQNCFRRKKSVIKHHVSSAEVKINKKLS-KEKECAFALDACEPVVEAISLD 549
G+ W F Q + + S +LS E++ A A+++ E ++
Sbjct: 923 GLPRPWYFPLQKSYWLGSGRTEAWEWSWPWARTPRLSVMEEDQACAMES-RRFEETRGME 981
Query: 550 MKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISML 609
+ + + + KL KVY K A+N L L LYENQ+++ LGHNGAGK+TT+S+L
Sbjct: 982 EEPTHLP-LVVCVDKLTKVY--KDDKKLALNKLSLNLYENQVVSFLGHNGAGKTTTMSIL 1038
Query: 610 VGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEE 669
GL PPT+G A ++G +I +MDEIRK LG+CPQ+++LF LTV EHL ++ LK + +E
Sbjct: 1039 TGLFPPTSGSATIYGHDIRTEMDEIRKNLGMCPQHNVLFDRLTVEEHLWFYSRLKSMAQE 1098
Query: 670 LLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYS 729
+ + +M++++ L++K + +V+ LSGGMKRKLS+ IA +G S+ +ILDEPT+G+DPY+
Sbjct: 1099 EIRREMDKMIEDLELSNKRHSLVQTLSGGMKRKLSVAIAFVGGSRAIILDEPTAGVDPYA 1158
Query: 730 MRLTWQXXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYT 789
R W +TH MDEA+ LGDRIAI+++G LKCCGS LFLK YG GY
Sbjct: 1159 RRAIWDLILKYKPGRTILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGTYGDGYR 1218
Query: 790 LTLVK-----SAPDASAAADIVYRHIPSALC----VSEVGTEITFKLPLASSSSFE-SMF 839
LTLVK P A P + C VS+ + L S +S E S
Sbjct: 1219 LTLVKRPAEPGGPQEPGLASSPPGRAPLSSCSELQVSQFIRKHVASCLLVSDTSTELSYI 1278
Query: 840 REIESCIRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFLRVA--GCNLDESE 892
E+ + + ++ D L + SFG+ TTLEEVFL+V+ +L+ SE
Sbjct: 1279 LPSEAAKKGAFERLFQHLERSLDALHLSSFGLMDTTLEEVFLKVSEEDQSLENSE 1333
|
|
| RGD|620238 Abca2 "ATP-binding cassette, subfamily A (ABC1), member 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 940 (336.0 bits), Expect = 1.2e-177, Sum P(8) = 1.2e-177
Identities = 227/657 (34%), Positives = 362/657 (55%)
Query: 260 PSN-IRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLY 318
P N ++M P+P YT D+F +I+ +M + ++ ++Y ++ I + V EKE +++E +
Sbjct: 682 PGNYVQMFPYPC--YTRDDFLFVIEHMMPLCMVISWVYSVAMTIQHIVAEKEHRLKEVMK 739
Query: 319 MMGLKDGIFHLSWFITYAAQFAVSSGIITACTM-DSLFKYSDKTVVFTYFFSFGLSAITL 377
MGL + + ++WFIT Q ++S +TA + +S +++ + + ++ I
Sbjct: 740 TMGLNNAVHWVAWFITGFVQLSISVTALTAILKYGQVLMHSHVLIIWLFLAVYAVATIMF 799
Query: 378 SFFISTFFARAKTAVAVGTLSFLGAFFPY-YT-VNDEA----VPMVLKVIASLLSPTAFA 431
F +S +++AK A A G + + ++ PY Y + +E + K IASL+S TAF
Sbjct: 800 CFLVSVLYSKAKLASACGGIIYFLSYVPYMYVAIREEVAHDKITAFEKCIASLMSTTAFG 859
Query: 432 LGSVNFADYERAHVGLRWSNMWRA---SSGVNFXXXXXXXXXXXXXYGVIGLYLDKVLPK 488
LGS FA YE A VG++W ++ N YGV+ Y++ V P
Sbjct: 860 LGSKYFALYEVAGVGIQWHTFSQSPVEGDDFNLLLAVTMLMVDTVVYGVLTWYIEAVHPG 919
Query: 489 ENGVRYRWNFIFQNCFRRKKSVIKHHVSSAEVKINKKLS-KEKECAFALDACEPVVEAIS 547
G+ W F Q + + S +LS E++ A A+++ E
Sbjct: 920 MYGLPRPWYFPLQKSYWLGSGRTETWEWSWPWAHAPRLSVMEEDQACAMES-RHFEETRG 978
Query: 548 LDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTIS 607
++ + + + + KL KVY K A+N L L LYENQ+++ LGHNGAGK+TT+S
Sbjct: 979 MEEEPTHLP-LVVCVDKLTKVY--KNDKKLALNKLSLNLYENQVVSFLGHNGAGKTTTMS 1035
Query: 608 MLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK 667
+L GL PPT+G A ++G +I +MDEIRK LG+CPQ+++LF +LTV EHL ++ LK +
Sbjct: 1036 ILTGLFPPTSGSATIYGHDIRTEMDEIRKNLGMCPQHNVLFDQLTVEEHLWFYSRLKSMA 1095
Query: 668 EELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP 727
+E + + +M++++ L++K + +V+ LSGGMKRKLS+ IA +G S+ +ILDEPT+G+DP
Sbjct: 1096 QEEIRKEMDKMIEDLELSNKRHSLVQTLSGGMKRKLSVAIAFVGGSRAIILDEPTAGVDP 1155
Query: 728 YSMRLTWQXXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVG 787
Y+ R W +TH MDEA+ LGDRIAI+++G LKCCGS LFLK YG G
Sbjct: 1156 YARRAIWDLILKYKPGRTILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGAYGDG 1215
Query: 788 YTLTLVKSAPDASAAADIVYRHIPSAL-----C----VSE-VGTEITFKLPLASSSSFES 837
Y LTLVK + + + PS C VS+ + + L ++ +S+ S
Sbjct: 1216 YRLTLVKRPAEPGTSQEPGMASSPSGRPQLSNCSEMQVSQFIRKHVASSLLVSDTSTELS 1275
Query: 838 MFREIESCIRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFLRVA--GCNLDESE 892
E+ + + ++ D L + SFG+ TTLEEVFL+V+ +L+ SE
Sbjct: 1276 YILPSEAVKKGAFERLFQQLEHSLDALHLSSFGLMDTTLEEVFLKVSEEDQSLENSE 1332
|
|
| UNIPROTKB|F1RFA0 ABCA3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 818 (293.0 bits), Expect = 1.7e-175, Sum P(5) = 1.7e-175
Identities = 205/587 (34%), Positives = 304/587 (51%)
Query: 1131 TVLHNSSCQHAGPTFINVMNTAILRLATGNRNMTIRTRNHPLPTTQSQQLQ---RHDLDX 1187
T L N+ H+ T + +++ + +L G R +I N+P P + Q +
Sbjct: 1034 TALFNNQAYHSPATALAIVDNLLFQLLCGPR-ASITASNYPQPRSALQAAKDQFNEGRKG 1092
Query: 1188 XXXXXXXXXXXXXXXXXXXXXXVKEREVKAKQQQLISGVSVLSYWTSTYIWDFISFLFPS 1247
V ER V+AK Q +SGV V ++W S +WD +SFL P+
Sbjct: 1093 FNIALNLLFAMAFLASTFSILAVSERAVQAKHVQFVSGVHVATFWLSALLWDLLSFLIPA 1152
Query: 1248 SCAIILFYIFGLDQFVGRGCLLPTVLIFLGYGLAIASSTYCLTFFFSDHTMAQNVVLLVH 1307
+++F F + F G L +L+ + YG AI Y L+FFFS A + + +
Sbjct: 1153 LLLLVVFKAFDVHAFTRDGHLADALLLLMLYGWAIIPLMYLLSFFFSAAATAYARLTVFN 1212
Query: 1308 FFTGLILMVISFIMGLLEAT-RSANSLLKNFFRLSPGFCFADGLASLALLRQGMKDKTSD 1366
+G+ ++ + + + L F + P C ++S + + TS
Sbjct: 1213 ILSGVATFLVVTVTRIPAVKLEELSRTLDRVFLVLPNHCLGMAVSSFYENYETRRYCTSS 1272
Query: 1367 GVF-----DWNVTSASICYL-GCESICYFLLTLGLELLPSHKWTLMTIKEWWKGTRHRLC 1420
V NV Y I F+ +L TL+ + E R + C
Sbjct: 1273 TVAAHYCQKHNVRYQENFYAWSAPGIGRFVASLAASGFAY--LTLLFLLETDLLWRLKFC 1330
Query: 1421 NTPSSYLEPLL-QSSSESDTLDLNEDIDVQVERNRVLSGSVDN---AIIYLRNLRKVYPG 1476
L Q+ + + T L ED DV ERNRVL+ +D+ + ++ L KVY
Sbjct: 1331 LCALRRRRALNNQTEAYTQTPALPEDQDVADERNRVLAPGLDSLPDTPLVIKELSKVYE- 1389
Query: 1477 GKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS 1536
+R+ +AV ++ VQ GECFG LG NGAGKTTT M++GEE + G AF+ G IRS
Sbjct: 1390 -QRAPL-LAVDRVSLKVQKGECFGLLGFNGAGKTTTFKMLTGEETVSSGDAFVGGYSIRS 1447
Query: 1537 DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAK 1596
D + R+ IGYCPQFDALL++LT +E L +YAR++G+ E ++ V L L +A
Sbjct: 1448 DLRKVRQQIGYCPQFDALLDHLTGRETLVMYARLRGIPERHIESCVENTLRGLLLEPYAN 1507
Query: 1597 KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAV 1656
K T SGGNKRKLS IA++G+P ++ LDEPSTGMDP+A+R +W+ ++R + GK A+
Sbjct: 1508 KRVGTYSGGNKRKLSAGIALLGEPTVIFLDEPSTGMDPVARRLLWDTVAR-ARESGK-AI 1565
Query: 1657 ILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVK 1703
I+T+HSM E +ALCTR+ IMV GQ +C+GSPQHLK++FG+ L K
Sbjct: 1566 IITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSKFGSGYSLRAK 1612
|
|
| UNIPROTKB|F1Q1F1 ABCA3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 922 (329.6 bits), Expect = 2.2e-169, Sum P(3) = 2.2e-169
Identities = 223/589 (37%), Positives = 316/589 (53%)
Query: 268 FPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLYMMGLKDGIF 327
FP + D F I+ + +L +L F Y +I V EKE K++E + MMGL +
Sbjct: 245 FPYPPFISDPFLVAIQYQLPLLLMLSFTYTALTIIRAVVQEKETKLKEYMRMMGLSSWLH 304
Query: 328 HLSWFITYAAQFAVSSGIITA--CTM---D-SLFKYSDKTVVFTYFFSFGLSAITLSFFI 381
+WF+ + V+ +T C D ++ +SD ++V + F ++++ SF +
Sbjct: 305 WTAWFLLFFLFLLVAVSFVTLLFCVKVKKDVAVLTHSDPSLVLVFLLCFATASVSFSFMV 364
Query: 382 STFFARAKTAVAVGTLSFLGAFFPYYTVNDEAVPMVL--KVIASLLSPTAFALGSVNFAD 439
STFF++A A A+G + + PY V M L K+++ LLS A A+G+
Sbjct: 365 STFFSKANMAAAIGGFLYFFTYIPYLFVAPRYNWMTLSQKLLSCLLSNVAMAMGAQLIGK 424
Query: 440 YERAHVGLRWSNMW---RASSGVNFXXXXXXXXXXXXXYGVIGLYLDKVLPKENGVRYRW 496
+E VG++W ++ +F YG++ Y++ VLP + GV W
Sbjct: 425 FEAKGVGVQWRDLLSPVNVDDDFSFGQVLGMLLLDSVLYGLVTWYVEAVLPGQFGVPQPW 484
Query: 497 NFIFQNCFRRKKSVIKHHVSSAEVKINKKLSKEKECAFALDACEPVVEAISLDMKQQE-V 555
F S H + L KE+E D E + + + ++ V
Sbjct: 485 YFFVM------PSYWCGHPRTV-------LGKEEED----DDPEKALRTEYFEAEPEDLV 527
Query: 556 DGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP 615
G I+I+ + KV+ G+ AV L L LYE QI LLGHNGAGK+TT+SML GL PP
Sbjct: 528 AG--IKIKHVTKVFRV--GSKAAVRDLTLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPP 583
Query: 616 TTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVV 675
T+G A + G +I+ DM +IRK LG+CPQ+D+LF LTV EHL +A LKG+ V
Sbjct: 584 TSGRAYINGYDISQDMVQIRKSLGLCPQHDVLFDNLTVAEHLYFYAQLKGLSHHKCPEEV 643
Query: 676 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ 735
M+ +GL DK + + + LSGG KRKLS+GIALI SKV++LDEPTSGMD S R W
Sbjct: 644 QRMLHVLGLEDKRDALSKFLSGGTKRKLSIGIALIAGSKVLMLDEPTSGMDAISRRAIWD 703
Query: 736 XXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKS 795
TTH MDEA+ LGDR+AIMA G L+CCGSSLFLK +YG GY +TLVK
Sbjct: 704 LLQQHKSDRTVLLTTHFMDEADLLGDRVAIMAKGELQCCGSSLFLKQKYGAGYHMTLVKE 763
Query: 796 AP-DASAAADIVYRHIPSALCVSEVGTEITFKLPLASSSSFESMFREIE 843
D A +V H+P+A S G E++F LP S+ FE +F ++E
Sbjct: 764 PHCDPEAVTRLVQHHVPTATLESRAGAELSFILPKESTHRFEGLFAKLE 812
|
|
| UNIPROTKB|Q99758 ABCA3 "ATP-binding cassette sub-family A member 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 920 (328.9 bits), Expect = 2.6e-168, Sum P(4) = 2.6e-168
Identities = 224/599 (37%), Positives = 316/599 (52%)
Query: 257 LYSPSNIRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREG 316
L+ + + FP + D F I+ + +L LL F Y + V EKE++++E
Sbjct: 234 LFQRLTVTIKRFPYPPFIADPFLVAIQYQLPLLLLLSFTYTALTIARAVVQEKERRLKEY 293
Query: 317 LYMMGLKDGIFHLSWFITYAAQFAVSSGIITA--CTMD----SLFKYSDKTVVFTYFFSF 370
+ MMGL + +WF+ + +++ +T C ++ SD ++V + F
Sbjct: 294 MRMMGLSSWLHWSAWFLLFFLFLLIAASFMTLLFCVKVKPNVAVLSRSDPSLVLAFLLCF 353
Query: 371 GLSAITLSFFISTFFARAKTAVAVGTLSFLGAFFPYYTVNDEAVPMVL--KVIASLLSPT 428
+S I+ SF +STFF++A A A G + + PY+ V M L K+ + LLS
Sbjct: 354 AISTISFSFMVSTFFSKANMAAAFGGFLYFFTYIPYFFVAPRYNWMTLSQKLCSCLLSNV 413
Query: 429 AFALGSVNFADYERAHVGLRWSNMW---RASSGVNFXXXXXXXXXXXXXYGVIGLYLDKV 485
A A+G+ +E +G++W ++ F YG++ Y++ V
Sbjct: 414 AMAMGAQLIGKFEAKGMGIQWRDLLSPVNVDDDFCFGQVLGMLLLDSVLYGLVTWYMEAV 473
Query: 486 LPKENGVRYRWNFIFQNCFRRKKSVIKHHVSSAEVKINKKLSKEKECAFALDACEPVVEA 545
P + GV W F + K V+ E + + E A + E E
Sbjct: 474 FPGQFGVPQPWYFFIMPSYWCGKP---RAVAGKEEE-----DSDPEKALRNEYFEAEPE- 524
Query: 546 ISLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTT 605
D+ V G I+I+ L KV+ + AV L L LYE QI LLGHNGAGK+TT
Sbjct: 525 ---DL----VAG--IKIKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTT 575
Query: 606 ISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKG 665
+SML GL PPT+G A + G I+ DM +IRK LG+CPQ+DILF LTV EHL +A LKG
Sbjct: 576 LSMLTGLFPPTSGRAYISGYEISQDMVQIRKSLGLCPQHDILFDNLTVAEHLYFYAQLKG 635
Query: 666 VKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGM 725
+ + V +M+ +GL DK N R LSGGM+RKLS+GIALI SKV+ILDEPTSGM
Sbjct: 636 LSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGM 695
Query: 726 DPYSMRLTWQXXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 785
D S R W TTH MDEA+ LGDRIAIMA G L+CCGSSLFLK +YG
Sbjct: 696 DAISRRAIWDLLQRQKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGSSLFLKQKYG 755
Query: 786 VGYTLTLVKSAP-DASAAADIVYRHIPSALCVSEVGTEITFKLPLASSSSFESMFREIE 843
GY +TLVK + + +V+ H+P+A S G E++F LP S+ FE +F ++E
Sbjct: 756 AGYHMTLVKEPHCNPEDISQLVHHHVPNATLESSAGAELSFILPRESTHRFEGLFAKLE 814
|
|
| UNIPROTKB|E1BCR1 ABCA3 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 937 (334.9 bits), Expect = 1.2e-173, Sum P(4) = 1.2e-173
Identities = 222/589 (37%), Positives = 320/589 (54%)
Query: 268 FPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLYMMGLKDGIF 327
FP + D F I+ + +L +L F Y +I V EKE+K++E + MMGL +
Sbjct: 245 FPYPPFISDPFLVAIQYQLPLLLMLSFTYTSLSIIRAIVQEKEKKLKEYMRMMGLSSWLL 304
Query: 328 HLSWFITYAAQFAVSSGIITA--CTM---D-SLFKYSDKTVVFTYFFSFGLSAITLSFFI 381
+WF+ + V+ +T C D ++ +SD T+V + F +S+I+ SF +
Sbjct: 305 WTAWFLLFFLLLLVAVSFMTLLFCVKVKKDVAVLAHSDPTLVLVFLACFAVSSISFSFMV 364
Query: 382 STFFARAKTAVAVGTLSFLGAFFPYYTVNDEAVPMVL--KVIASLLSPTAFALGSVNFAD 439
STFF++A A A+G + ++ PY+ V M L K+ + LLS A A+G+
Sbjct: 365 STFFSKANMAAAIGGFLYFFSYIPYFFVAPRYNWMTLSQKLFSCLLSNVAMAMGAQLIGK 424
Query: 440 YERAHVGLRWSNMW---RASSGVNFXXXXXXXXXXXXXYGVIGLYLDKVLPKENGVRYRW 496
+E G++W ++ F YG++ Y++ VLP + GV W
Sbjct: 425 FEAKGTGIQWRDLLSPVNVDDDFTFGQVLGMLLLDSVLYGLVAWYVEAVLPGQFGVPQPW 484
Query: 497 NFIFQNCFRRKKSVIKHHVSSAEVKINKKLSKEKECAFALDACEPVVEAISLDMKQQE-V 555
F ++ + + L KE+E D E V+ + + ++ V
Sbjct: 485 YFF----------ILPSYWCG---RPRTALGKEEED----DDPEKVLRTEYFEAEPEDLV 527
Query: 556 DGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP 615
G I+I+ + KV+ AV L L LYE QI LLGHNGAGK+TT+SML GL PP
Sbjct: 528 AG--IKIKHVSKVFRVGNKGKAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPP 585
Query: 616 TTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVV 675
T+G A + G ++ DMD+IRK LG+CPQ+D+LF +LTV EHL +A LKG+ + V
Sbjct: 586 TSGRAYISGYEVSQDMDQIRKSLGLCPQHDVLFDDLTVAEHLYFYAQLKGLPRQKCPEEV 645
Query: 676 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ 735
M+ +GL +K + R LSGGM+RKLS+GIALI SKV++LDEPTSG+D S R W
Sbjct: 646 KRMLHVLGLEEKRDSRSRFLSGGMRRKLSIGIALIAGSKVLMLDEPTSGVDAISRRAIWD 705
Query: 736 XXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKS 795
TTH MDEA+ LGDRIAIMA G L+CCGSSLFLK +YG GY +TLVK
Sbjct: 706 LLQQHKSDRTILLTTHFMDEADLLGDRIAIMAKGELQCCGSSLFLKEKYGAGYHMTLVKE 765
Query: 796 AP-DASAAADIVYRHIPSALCVSEVGTEITFKLPLASSSSFESMFREIE 843
+ + +V H+P+A S G E++F LP S+ FES+F ++E
Sbjct: 766 PHCNPEGISRLVQHHVPNATLESSAGAELSFILPKESTHRFESLFAKLE 814
|
|
| MGI|MGI:1351617 Abca3 "ATP-binding cassette, sub-family A (ABC1), member 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 923 (330.0 bits), Expect = 1.3e-173, Sum P(4) = 1.3e-173
Identities = 221/590 (37%), Positives = 320/590 (54%)
Query: 268 FPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLYMMGLKDGIF 327
FP Y D F I+ + +L +L F Y +I V EKE+K++E + MMGL +
Sbjct: 245 FPFPPYISDPFLIAIQYQLPLLLMLSFTYTSLTIIRAVVQEKEKKLKEYMRMMGLNSWLH 304
Query: 328 HLSWFITYAAQFAVSSGIITA--CTM---D-SLFKYSDKTVVFTYFFSFGLSAITLSFFI 381
+WF+ + F + +T C D ++ SD ++V + F +S+I+ SF +
Sbjct: 305 WSAWFLMFFLFFLIVVSFMTLLFCVKVKKDIAVLSNSDPSLVLAFLLCFAISSISFSFMV 364
Query: 382 STFFARAKTAVAVGTLSFLGAFFPYYTVNDEAVPMVL--KVIASLLSPTAFALGSVNFAD 439
STFF++A A AVG + + PY+ V M L K+++ LLS A A+G+
Sbjct: 365 STFFSKANIAAAVGGFLYFFTYTPYFFVAPRYNWMTLSQKLLSCLLSNVAMAMGAQLIGK 424
Query: 440 YERAHVGLRWSNMWR---ASSGVNFXXXXXXXXXXXXXYGVIGLYLDKVLPKENGVRYRW 496
+E G++W ++ F YG++ Y++ V P + GV W
Sbjct: 425 FEAKGTGIQWRDLLNPVNVDDNFCFGQVLGMLLLDSALYGLVTWYVEAVFPGQFGVPQPW 484
Query: 497 NFIFQNCF--RRKKSVIKHHVSSAEVKINKKLSKEKECAFALDACEPVVEAISLDMKQQE 554
+F + ++V+ ++ + K L E +A EP D+
Sbjct: 485 HFFLMPSYWCGNPRTVVGKEEEGSDPE--KALRNEY-----FEA-EPE------DL---- 526
Query: 555 VDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP 614
V G I+I+ L KV+ + + L L LYE QI LLGHNGAGK+TT+S+L GL P
Sbjct: 527 VAG--IKIKHLSKVFQVGNKDKMGIRDLTLNLYEGQITVLLGHNGAGKTTTMSLLTGLFP 584
Query: 615 PTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESV 674
PT+G A + G I+ DM +IRK LG+CPQ+D+LF LTV EHL +A LKG+ +
Sbjct: 585 PTSGHAYIHGYEISQDMAQIRKSLGLCPQHDVLFDNLTVAEHLYFYAQLKGLSLQKCPEE 644
Query: 675 VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTW 734
V +M+ + L DK ++ + LSGGMKRKLS+GIALI SKV++LDEPTSGMD S R W
Sbjct: 645 VKQMLHILSLEDKRDLRSKFLSGGMKRKLSIGIALIAGSKVLMLDEPTSGMDAVSRRAIW 704
Query: 735 QXXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVK 794
TTH MDEA+ LGDRIAI+A G L+CCGSSLFLK +YG GY +TLVK
Sbjct: 705 DLLQQQKSDRTVLLTTHFMDEADLLGDRIAILAKGELQCCGSSLFLKQKYGAGYHMTLVK 764
Query: 795 SAP-DASAAADIVYRHIPSALCVSEVGTEITFKLPLASSSSFESMFREIE 843
+ + +V+ H+P+A+ S G E++F LP S+ FES+F ++E
Sbjct: 765 EPHCNPEGISQLVHHHVPNAMLESHAGAELSFILPKESTHRFESLFAKLE 814
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q84M24 | AB1A_ARATH | No assigned EC number | 0.7308 | 0.9694 | 0.9442 | yes | no |
| Q99758 | ABCA3_HUMAN | No assigned EC number | 0.3236 | 0.8319 | 0.8949 | yes | no |
| Q8R420 | ABCA3_MOUSE | No assigned EC number | 0.3204 | 0.8325 | 0.8955 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1833 | |||
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-115 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-104 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-101 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-96 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-79 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 3e-78 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-64 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 4e-63 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-62 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-60 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-59 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 4e-58 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-52 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 4e-51 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 4e-50 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-49 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 6e-48 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 4e-47 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 4e-46 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 7e-46 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 9e-46 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 1e-45 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 1e-45 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 4e-45 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 5e-45 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-44 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-44 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 3e-44 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-44 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 8e-43 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 5e-42 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 6e-42 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 9e-42 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 2e-41 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 4e-41 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 6e-41 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 4e-40 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 4e-40 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-39 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 3e-39 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 3e-39 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 5e-39 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 5e-39 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 6e-39 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 9e-39 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-38 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 3e-38 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 1e-37 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-37 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 4e-37 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 4e-37 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 4e-37 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 6e-37 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 6e-37 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 7e-37 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 9e-37 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-36 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 4e-36 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 5e-36 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-35 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-35 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 7e-35 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 7e-35 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 9e-35 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-34 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-34 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-34 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 3e-34 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 7e-34 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-33 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-33 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-33 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 3e-33 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 4e-33 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 5e-33 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 5e-33 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 8e-33 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 9e-33 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-32 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-32 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-32 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 3e-32 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 3e-32 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 3e-32 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 4e-32 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 4e-32 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 5e-32 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 7e-32 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-31 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-31 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-31 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 3e-31 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 3e-31 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 6e-31 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 7e-31 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 7e-31 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-30 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 1e-30 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-30 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-30 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 3e-30 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-30 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 4e-30 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 5e-30 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 8e-30 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 8e-30 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 9e-30 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 9e-30 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-29 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-29 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-29 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 3e-29 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 4e-29 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 4e-29 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 9e-29 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 9e-29 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-28 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-28 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-28 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-28 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 2e-28 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-28 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 3e-28 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 5e-28 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 7e-28 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 8e-28 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 9e-28 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-27 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-27 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-27 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-27 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-27 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-27 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-27 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 3e-27 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 4e-27 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 6e-27 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 6e-27 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 7e-27 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 7e-27 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-26 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-26 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-26 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 3e-26 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 8e-26 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 8e-26 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 9e-26 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 9e-26 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 9e-26 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-25 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-25 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-25 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-25 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-25 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 3e-25 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 3e-25 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-25 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 4e-25 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 5e-25 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 8e-25 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-24 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-24 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-24 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 3e-24 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-24 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 3e-24 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 3e-24 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 4e-24 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 4e-24 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 4e-24 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 5e-24 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 6e-24 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 6e-24 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 6e-24 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 7e-24 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 7e-24 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 7e-24 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 8e-24 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 9e-24 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-23 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-23 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-23 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-23 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-23 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 2e-23 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-23 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 2e-23 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 3e-23 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 3e-23 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 3e-23 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 4e-23 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 6e-23 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 6e-23 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 7e-23 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 7e-23 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 8e-23 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 1e-22 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 1e-22 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-22 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 2e-22 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 2e-22 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 3e-22 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 3e-22 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 4e-22 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 4e-22 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 4e-22 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 5e-22 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 5e-22 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 6e-22 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 6e-22 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 6e-22 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 7e-22 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 9e-22 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-21 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 1e-21 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 1e-21 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 2e-21 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-21 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-21 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-21 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-21 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-21 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-21 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 3e-21 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 3e-21 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 3e-21 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-21 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 3e-21 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 4e-21 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 5e-21 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 7e-21 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 8e-21 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 8e-21 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 9e-21 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 9e-21 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 9e-21 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-20 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 1e-20 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-20 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-20 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-20 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-20 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-20 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-20 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-20 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-20 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-20 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-20 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 3e-20 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 3e-20 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 5e-20 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 5e-20 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 5e-20 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 9e-20 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 1e-19 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 1e-19 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 2e-19 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-19 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-19 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 2e-19 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-19 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-19 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-19 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 3e-19 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 3e-19 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 3e-19 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 3e-19 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 3e-19 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 4e-19 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 5e-19 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 5e-19 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 5e-19 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 5e-19 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 5e-19 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 5e-19 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 6e-19 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 6e-19 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 6e-19 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 7e-19 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 9e-19 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 9e-19 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 9e-19 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 9e-19 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 9e-19 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-18 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 1e-18 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-18 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-18 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-18 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 2e-18 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 2e-18 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 2e-18 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 3e-18 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 3e-18 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 3e-18 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 3e-18 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 3e-18 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 3e-18 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 3e-18 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 4e-18 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 6e-18 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 6e-18 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 6e-18 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 6e-18 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 6e-18 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 6e-18 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 7e-18 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 7e-18 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 7e-18 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 7e-18 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 7e-18 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 8e-18 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 8e-18 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 8e-18 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 9e-18 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 9e-18 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-17 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-17 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 1e-17 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-17 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-17 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-17 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-17 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-17 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 2e-17 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 3e-17 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 3e-17 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 3e-17 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 3e-17 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 3e-17 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 3e-17 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 4e-17 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 4e-17 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 4e-17 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 4e-17 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 5e-17 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 5e-17 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 6e-17 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 6e-17 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 6e-17 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 7e-17 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 7e-17 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 9e-17 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 9e-17 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 1e-16 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-16 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-16 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 1e-16 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-16 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-16 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 3e-16 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 4e-16 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 4e-16 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 4e-16 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 5e-16 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 5e-16 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 5e-16 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 6e-16 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 6e-16 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 7e-16 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 7e-16 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 7e-16 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 8e-16 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 9e-16 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 9e-16 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 1e-15 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-15 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-15 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 1e-15 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-15 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-15 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-15 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 2e-15 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-15 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 2e-15 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 2e-15 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-15 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-15 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 3e-15 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-15 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 3e-15 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 3e-15 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 4e-15 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 4e-15 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 4e-15 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 5e-15 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 5e-15 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 6e-15 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 6e-15 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 7e-15 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 8e-15 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 8e-15 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-14 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-14 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 1e-14 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-14 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 1e-14 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 1e-14 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 1e-14 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-14 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-14 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-14 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-14 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 2e-14 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-14 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 2e-14 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 2e-14 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-14 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-14 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 3e-14 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 3e-14 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 4e-14 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 4e-14 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 4e-14 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 5e-14 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 6e-14 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 6e-14 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 6e-14 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 6e-14 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 6e-14 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 7e-14 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 7e-14 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 8e-14 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 8e-14 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 8e-14 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 8e-14 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 9e-14 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 9e-14 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-13 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 1e-13 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-13 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 1e-13 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 1e-13 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-13 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-13 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-13 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-13 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-13 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-13 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 3e-13 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 3e-13 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 3e-13 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 4e-13 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 4e-13 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 4e-13 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 5e-13 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 5e-13 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 5e-13 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 5e-13 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 5e-13 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 5e-13 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 5e-13 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 6e-13 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 6e-13 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 7e-13 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 7e-13 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 8e-13 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 8e-13 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 8e-13 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 9e-13 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 9e-13 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 9e-13 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 1e-12 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 1e-12 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 1e-12 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-12 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 2e-12 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 3e-12 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 3e-12 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 3e-12 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 3e-12 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 3e-12 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-12 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 4e-12 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 4e-12 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 4e-12 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 4e-12 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 4e-12 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 5e-12 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 5e-12 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 5e-12 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 6e-12 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 6e-12 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 7e-12 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 7e-12 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 7e-12 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 8e-12 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 8e-12 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 8e-12 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 9e-12 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-11 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-11 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 1e-11 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 1e-11 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-11 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 1e-11 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-11 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-11 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 1e-11 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 1e-11 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 1e-11 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-11 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 2e-11 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 2e-11 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-11 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-11 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 2e-11 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-11 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 2e-11 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 2e-11 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 3e-11 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 3e-11 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 4e-11 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 4e-11 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 4e-11 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 4e-11 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 4e-11 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 4e-11 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 5e-11 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 5e-11 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 5e-11 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 5e-11 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 6e-11 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 6e-11 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 6e-11 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 6e-11 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 7e-11 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 7e-11 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 8e-11 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 1e-10 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-10 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-10 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 2e-10 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-10 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 2e-10 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-10 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-10 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 3e-10 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 3e-10 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-10 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 3e-10 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 3e-10 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 3e-10 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 4e-10 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 4e-10 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 4e-10 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 4e-10 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 4e-10 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 5e-10 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 5e-10 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 7e-10 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 7e-10 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 8e-10 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 8e-10 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 8e-10 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 9e-10 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 1e-09 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-09 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 1e-09 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-09 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-09 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 1e-09 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-09 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 1e-09 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 1e-09 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 1e-09 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-09 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 2e-09 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-09 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 2e-09 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-09 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-09 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 2e-09 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 3e-09 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 3e-09 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 3e-09 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 3e-09 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 3e-09 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 3e-09 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-09 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 3e-09 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 4e-09 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 4e-09 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 4e-09 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 4e-09 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 5e-09 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 6e-09 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 7e-09 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 7e-09 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 8e-09 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 9e-09 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 9e-09 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-08 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-08 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-08 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 1e-08 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 1e-08 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 2e-08 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-08 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 3e-08 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 3e-08 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 3e-08 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 3e-08 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 3e-08 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 4e-08 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 4e-08 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 4e-08 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 5e-08 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 5e-08 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 6e-08 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 7e-08 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 7e-08 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 7e-08 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 8e-08 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 8e-08 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 9e-08 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 9e-08 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-07 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 1e-07 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 2e-07 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 3e-07 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 3e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 3e-07 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 3e-07 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 3e-07 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 3e-07 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 4e-07 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 4e-07 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 4e-07 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 5e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 6e-07 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 6e-07 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 7e-07 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 7e-07 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 7e-07 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 9e-07 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 1e-06 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-06 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-06 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 2e-06 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 2e-06 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-06 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-06 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 2e-06 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 3e-06 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 3e-06 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 4e-06 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 4e-06 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 5e-06 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 6e-06 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 6e-06 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 7e-06 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 7e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 9e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 9e-06 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 9e-06 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 9e-06 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 1e-05 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 1e-05 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 2e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-05 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-05 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-05 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-05 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 3e-05 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 3e-05 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 4e-05 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 4e-05 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 4e-05 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 5e-05 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 5e-05 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 7e-05 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 9e-05 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 9e-05 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 1e-04 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 1e-04 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 1e-04 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 2e-04 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 2e-04 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 2e-04 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-04 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 2e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-04 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 2e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-04 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 3e-04 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 4e-04 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 4e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 5e-04 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 7e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 7e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 7e-04 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 0.001 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 0.002 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 0.002 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.002 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 0.003 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.003 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 0.003 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.004 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 0.004 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 0.004 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 0.004 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 407 bits (1046), Expect = e-115
Identities = 241/681 (35%), Positives = 366/681 (53%), Gaps = 98/681 (14%)
Query: 263 IRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLYMMGL 322
++ +P+P + DD F I+ R + +L ++Y +S + V EKE +++E L G+
Sbjct: 634 LQQMPYPC--FVDDSFMIILNRCFPIFMVLAWIYSVSMTVKSIVLEKELRLKETLKNQGV 691
Query: 323 KDGIFHLSWFITYAAQFAVSSGIITACTMDS-LFKYSDKTVVFTYFFSFGLSAITLSFFI 381
+ + +WF+ + ++S ++T M + YSD ++F + +F + I F +
Sbjct: 692 SNAVIWCTWFLDSFSIMSMSIFLLTIFIMHGRILHYSDPFILFLFLLAFSTATIMQCFLL 751
Query: 382 STFFARAKTAVAVGTLSFLGAFFPY---YTVNDEAVPMVLKVIASLLSPTAFALGSVNFA 438
STFF++A A A + + + P+ + D + LK SLLSP AF G+
Sbjct: 752 STFFSKASLAAACSGVIYFTLYLPHILCFAWQDR-MTADLKTAVSLLSPVAFGFGTEYLV 810
Query: 439 DYERAHVGLRWSNMWRA---SSGVNFLVCLLMMLLDTLLYGVIGLYLDKVLPKENGVRYR 495
+E +GL+WSN+ + +FL+ + MMLLD LYG++ YLD+V P + G
Sbjct: 811 RFEEQGLGLQWSNIGNSPLEGDEFSFLLSMKMMLLDAALYGLLAWYLDQVFPGDYGTPLP 870
Query: 496 WNFIFQN--------CFRRKKSVIKHHVSSAEVKINKKLSKEKECAFALDACEPVVEAIS 547
W F+ Q C R++ ++ + L++E E D P E I+
Sbjct: 871 WYFLLQESYWLGGEGCSTREERALEK---------TEPLTEEME-----DPEHP--EGIN 914
Query: 548 LDMKQQE----VDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKS 603
++E V G C+ + L K++ + AV+ L +T YENQI A LGHNGAGK+
Sbjct: 915 DSFFERELPGLVPGVCV--KNLVKIF--EPSGRPAVDRLNITFYENQITAFLGHNGAGKT 970
Query: 604 TTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVL 663
TT+S+L GL+PPT+G LV GK+I ++D +R+ LG+CPQ++ILF LTV EH+ +A L
Sbjct: 971 TTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQL 1030
Query: 664 KGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTS 723
KG E + + M+++ GL K N + LSGGM+RKLS+ IA +GD+KVV+LDEPTS
Sbjct: 1031 KGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTS 1090
Query: 724 GMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 783
G+DPYS R W L+ K + GR I+++TH MDEA+ LGDRIAI++ G L C G+ LFLK+
Sbjct: 1091 GVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150
Query: 784 YGVGYTLTLVKSAP---------------------------------------DASAAAD 804
+G G+ LTLV+ D + D
Sbjct: 1151 FGTGFYLTLVRKMKNIQSQRGGCEGTCSCTSKGFSTRCPARVDEITPEQVLDGDVNELMD 1210
Query: 805 IVYRHIPSALCVSEVGTEITFKLPLAS--SSSFESMFREIESCIRKSVSKVEADATEDTD 862
+VY H+P A V +G E+ F LP + ++ S+FRE+E + AD
Sbjct: 1211 LVYHHVPEAKLVECIGQELIFLLPNKNFKQRAYASLFRELEETL--------AD------ 1256
Query: 863 YLGIESFGISVTTLEEVFLRV 883
LG+ SFGIS T LEE+FL+V
Sbjct: 1257 -LGLSSFGISDTPLEEIFLKV 1276
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 332 bits (855), Expect = e-104
Identities = 123/227 (54%), Positives = 162/227 (71%), Gaps = 7/227 (3%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
+ +RNL K Y G K AV L+ +V GE FG LG NGAGKTTTL M++GE PT
Sbjct: 1 LQIRNLTKTYKKGT----KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTS 56
Query: 1525 GTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVME 1584
GTA+I G IR+D KAAR+ +GYCPQFDAL + LTV+EHL YAR+KG+ + + + V
Sbjct: 57 GTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVEL 116
Query: 1585 KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVI 1644
L L A K + TLSGG KRKLS+AIA+IG P +++LDEP++G+DP ++R +W++I
Sbjct: 117 LLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLI 176
Query: 1645 SRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1691
+ R+G++ +ILTTHSM+EA+ALC RI IM G+LRCIGSPQ LK
Sbjct: 177 LEV--RKGRS-IILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 323 bits (830), Expect = e-101
Identities = 122/222 (54%), Positives = 154/222 (69%), Gaps = 2/222 (0%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+QIR L K Y K+G AV+ L L +Y+ +I LLGHNGAGK+TT+ ML G + PT+G
Sbjct: 1 LQIRNLTKTY--KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGT 58
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 679
A + G +I D R+ LG CPQ+D LF ELTVREHL +A LKG+ + ++ V ++
Sbjct: 59 AYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLL 118
Query: 680 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 739
+GL DK N R LSGGMKRKLSL IALIG V++LDEPTSG+DP S R W LI +
Sbjct: 119 RVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILE 178
Query: 740 IKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781
++KGR I+LTTHSMDEAE L DRIAIM++G L+C GS LK
Sbjct: 179 VRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 346 bits (889), Expect = 3e-96
Identities = 213/583 (36%), Positives = 315/583 (54%), Gaps = 54/583 (9%)
Query: 1132 VLHNSSCQHAGPTFINVMNTAILRLAT-GNRN---MTIRTRNHPLPTTQSQQLQRHDLDA 1187
V N+ HA +F+NV + AILR + +R+ I + PL T+ +QL +
Sbjct: 1617 VWFNNKGWHALVSFLNVAHNAILRASLPKDRDPEEYGITVISQPLNLTK-EQLSEITVLT 1675
Query: 1188 FSVSIIISI----AFSFIPASFAVAIVKEREVKAKQQQLISGVSVLSYWTSTYIWDFISF 1243
SV +++I A SF+PASF + +++ER KAK Q ISGVS +YW + ++WD +++
Sbjct: 1676 TSVDAVVAICVIFAMSFVPASFVLYLIQERVNKAKHLQFISGVSPTTYWLTNFLWDIMNY 1735
Query: 1244 LFPSSCAIILFYIFGLDQFVGRGCLLPTVLIFLGYGLAIASSTYCLTFFFSDHTMAQNVV 1303
+ + +F F + L V + + YG A+ Y +F F + A +
Sbjct: 1736 AVSAGLVVGIFIGFQKKAYTSPENLPALVALLMLYGWAVIPMMYPASFLFDVPSTAYVAL 1795
Query: 1304 LLVHFFTGLILMVISFIMGLLEATRSA---NSLLKNFFRLSPGFCFADGLASLALLRQGM 1360
+ F G+ I+F++ L E R+ N++L+ + P FC GL LAL Q +
Sbjct: 1796 SCANLFIGINSSAITFVLELFENNRTLLRFNAMLRKLLIVFPHFCLGRGLIDLAL-SQAV 1854
Query: 1361 KD-------KTSDGVFDWNVTSASICYLGCESICYFLLTLGLELLPSHKWTLMTIKEWWK 1413
D + S F W++ ++ + E + YFLLTL L+ H + I E
Sbjct: 1855 TDVYAQFGEEHSANPFQWDLIGKNLVAMAVEGVVYFLLTL---LIQHHFFLSRWIAE--- 1908
Query: 1414 GTRHRLCNTPSSYLEPLLQSSSESDTLDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKV 1473
P+ EP+ +ED DV ER R++SG I+ L L KV
Sbjct: 1909 ---------PAK--EPIF-----------DEDDDVAEERQRIISGGNKTDILRLNELTKV 1946
Query: 1474 YPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKD 1533
Y G + AV L V+ GECFG LG NGAGKTTT M++G+ T G A + GK
Sbjct: 1947 YSG----TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKS 2002
Query: 1534 IRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK 1593
I ++ + +GYCPQFDA+ + LT +EHL LYAR++GV ++ V + L
Sbjct: 2003 ILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSL 2062
Query: 1594 HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGK 1653
+A + + T SGGNKRKLS AIA+IG PP+V+LDEP+TGMDP A+R +W I + R+G+
Sbjct: 2063 YADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSI-IREGR 2121
Query: 1654 TAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN 1696
AV+LT+HSM E +ALCTR+ IMV G +C+G+ QHLK++FG+
Sbjct: 2122 -AVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGD 2163
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 263 bits (675), Expect = 2e-79
Identities = 99/250 (39%), Positives = 157/250 (62%), Gaps = 5/250 (2%)
Query: 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTG 618
I++R L K Y + A++ + + +I LLG NGAGK+T + +L GL+ PT+G
Sbjct: 4 VIEVRNLTKKYGGDK---TALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSG 60
Query: 619 DALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEM 678
+ LV G ++ + ++R+ +G PQ L+PELTVRE+LE FA L G+ +E E + E+
Sbjct: 61 EILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEEL 120
Query: 679 VDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIK 738
++ GL DK N VR LSGGMK++LS+ +AL+ D +++ILDEPTSG+DP S R W+L++
Sbjct: 121 LELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLR 180
Query: 739 KIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKSA 796
++ K G ILL+TH ++EAEEL DR+ I+ +G + G+ LK ++G + L
Sbjct: 181 ELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEPER 240
Query: 797 PDASAAADIV 806
+ + + +
Sbjct: 241 LELAELLEGL 250
|
Length = 293 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 260 bits (666), Expect = 3e-78
Identities = 104/296 (35%), Positives = 174/296 (58%), Gaps = 11/296 (3%)
Query: 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY 1521
+I +RNL K Y G K A+ ++F V+ GE FG LG NGAGKTT L +++G
Sbjct: 2 IEVIEVRNLTKKYGGDKT-----ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK 56
Query: 1522 PTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDV 1581
PT G + G D+ +P RR IGY PQ +L LTV+E+LE +AR+ G+++ ++
Sbjct: 57 PTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER 116
Query: 1582 VMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMW 1641
+ E L F L A K TLSGG K++LS+A+A++ DP ++ILDEP++G+DP ++R +W
Sbjct: 117 IEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIW 176
Query: 1642 EVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELE 1701
E++ L+ ++G ++L+TH + EA+ LC R+ I+ G++ G+P+ LK +FG +E
Sbjct: 177 ELLRELA-KEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIE 235
Query: 1702 VKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSENATAAEI 1757
++P + +L + ++ + +L+ L I+SI + + ++
Sbjct: 236 LEPERLELAELLE-----GLKLVKGEEELAEILEALLEEGVKIESIEVKEPSLEDV 286
|
Length = 293 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 214 bits (549), Expect = 3e-64
Identities = 80/213 (37%), Positives = 127/213 (59%), Gaps = 41/213 (19%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I++R L K Y K A++ + LT+ + +I LLG NGAGK+T I +++GL+ P +G+
Sbjct: 1 IEVRNLSKRYGKKT----ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGE 56
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 679
V GK+I + +E+++ +G P+ L+ LTVRE+L+
Sbjct: 57 IKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------- 95
Query: 680 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 739
LSGGMK++L+L AL+ D +++ILDEPTSG+DP S R W+L+++
Sbjct: 96 ---------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRE 140
Query: 740 IKK-GRIILLTTHSMDEAEELGDRIAIMANGSL 771
+KK G+ ILL++H ++EAE L DR+AI+ NG +
Sbjct: 141 LKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 211 bits (541), Expect = 4e-63
Identities = 75/215 (34%), Positives = 121/215 (56%), Gaps = 44/215 (20%)
Query: 1467 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1526
+RNL K Y K A+ ++ +V+ GE +G LG NGAGKTT + +I G P G
Sbjct: 3 VRNLSKRYGK------KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGE 56
Query: 1527 AFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKL 1586
+ GKDI+ +P+ +R IGY P+ +L E LTV+E+L+L
Sbjct: 57 IKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKL-------------------- 96
Query: 1587 VEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISR 1646
SGG K++L++A A++ DP ++ILDEP++G+DP ++R WE++
Sbjct: 97 ----------------SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRE 140
Query: 1647 LSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
L ++GKT ++L++H + EA+ LC R+ I+ G++
Sbjct: 141 LK-KEGKT-ILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 215 bits (550), Expect = 2e-62
Identities = 102/325 (31%), Positives = 165/325 (50%), Gaps = 29/325 (8%)
Query: 567 KVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKN 626
KVY G+ AV+ + + E ++ LG NGAGK+TTI ML L+ PT+G A V G +
Sbjct: 1 KVY----GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYD 56
Query: 627 ITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLAD 686
+ + ++R+ +G+ PQY + +LT RE+LEM L G+ ++ E E+++ L +
Sbjct: 57 VVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGE 116
Query: 687 KVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK-GRI 745
+ V SGGM+R+L + +LI V+ LDEPT+G+DP + R W I+ +K+ G
Sbjct: 117 AADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVT 176
Query: 746 ILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKSAP-----DAS 800
ILLTTH M+EA++L DRIAI+ +G + G+ LK + G TL + S
Sbjct: 177 ILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLG-KDTLESRPRDIQSLKVEVS 235
Query: 801 AAADIVYRHIPSALCVSEVGTEITFKLPLASSSSFESMFREIESCIRKSVSKVEADATED 860
+ L V+ I +P + EI ++ ++ + +TE
Sbjct: 236 MLIAELGETGLGLLAVTVDSDRIKILVPDG-----DETVPEIVEAAIRNGIRIRSISTER 290
Query: 861 TDYLGIESFGISVTTLEEVFLRVAG 885
+L++VFL++ G
Sbjct: 291 -------------PSLDDVFLKLTG 302
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 206 bits (526), Expect = 2e-60
Identities = 86/224 (38%), Positives = 131/224 (58%), Gaps = 6/224 (2%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I++ L K Y AV + + +I LLG NGAGK+TTI ML L+ PT+G
Sbjct: 1 IEVENLVKKYGDFE----AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGR 56
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 679
A V G ++ + E+R+ +G+ Q + ELT E+L + A L GV + E++
Sbjct: 57 ATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELL 116
Query: 680 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 739
D VGL + + +V+ SGGM+R+L + +L+ +V+ LDEPT G+DP + W+ I+K
Sbjct: 117 DFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEK 176
Query: 740 IKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781
+K+ G ILLTTH M+EAE+L DR+AI+ +G + G+ LK
Sbjct: 177 LKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEELK 220
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 203 bits (519), Expect = 2e-59
Identities = 86/227 (37%), Positives = 130/227 (57%), Gaps = 7/227 (3%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
I + NL K Y AV ++F V+ GE FG LG NGAGKTTT+ M++ PT
Sbjct: 1 IEVENLVKKY------GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTS 54
Query: 1525 GTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVME 1584
G A + G D+ +P+ RR IG Q ++ + LT E+L ++AR+ GV + + E
Sbjct: 55 GRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDE 114
Query: 1585 KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVI 1644
L LL+ A + T SGG +R+L +A +++ P ++ LDEP+ G+DP + +WE I
Sbjct: 115 LLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYI 174
Query: 1645 SRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1691
+L G T ++LTTH M EA+ LC R+ I+ G++ G+P+ LK
Sbjct: 175 EKLKEEFGMT-ILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEELK 220
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 203 bits (517), Expect = 4e-58
Identities = 91/225 (40%), Positives = 136/225 (60%), Gaps = 3/225 (1%)
Query: 1478 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD 1537
K AV + F V+ GE FGFLG NGAGKTTT+ M++ PT GTA + G D+ +
Sbjct: 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE 60
Query: 1538 PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKK 1597
P+ RR IG PQ+ ++ E LT +E+LE+ R+ G+ + ++ E L F+L + A +
Sbjct: 61 PRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADR 120
Query: 1598 PSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVI 1657
P T SGG +R+L +A ++I P ++ LDEP+TG+DP +R +W+ I L ++ ++
Sbjct: 121 PVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRAL--KEEGVTIL 178
Query: 1658 LTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG-NFLELE 1701
LTTH M EA LC RI I+ G++ G+P+ LK R G + LE
Sbjct: 179 LTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDTLESR 223
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 184 bits (469), Expect = 1e-52
Identities = 74/217 (34%), Positives = 133/217 (61%), Gaps = 7/217 (3%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+Q+ L K Y G A++ + LTL + LLG NGAGK+T + +L L PP++G
Sbjct: 1 LQLENLTKRY----GKKRALDGVSLTL-GPGMYGLLGPNGAGKTTLMRILATLTPPSSGT 55
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 679
+ G+++ ++R+ +G PQ ++P TVRE L+ A LKG+ + +++ V E++
Sbjct: 56 IRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVL 115
Query: 680 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYS-MRLTWQLIK 738
+ V L D+ + +LSGGM+R++ + AL+GD ++I+DEPT+G+DP +R L+
Sbjct: 116 ELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFR-NLLS 174
Query: 739 KIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 775
++ + RI++L+TH +++ E L +++A++ G L G
Sbjct: 175 ELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 183 bits (465), Expect = 4e-51
Identities = 96/229 (41%), Positives = 138/229 (60%), Gaps = 10/229 (4%)
Query: 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1522
A I RN+ K Y K+ V L+F VQ GECFG LG NGAGKTTTL M+ G +P
Sbjct: 6 APIDFRNVEKRY------GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHP 59
Query: 1523 TDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV 1582
G+ + G+ + S + AR+ +G PQFD L TV+E+L ++ R G++ +V
Sbjct: 60 DAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALV 119
Query: 1583 MEKLVEFDLLKH-AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMW 1641
L+EF L++ A LSGG KR+L++A A++ DP +++LDEP+TG+DP A+ MW
Sbjct: 120 -PPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMW 178
Query: 1642 EVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
E + L R GKT ++LTTH M EA+ LC R+ ++ G+ G+P L
Sbjct: 179 ERLRSLLAR-GKT-ILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHAL 225
|
Length = 306 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 196 bits (500), Expect = 4e-50
Identities = 119/332 (35%), Positives = 184/332 (55%), Gaps = 27/332 (8%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+++ +L KVY+ AV+ L + + + LLG NGAGK+TT ML G T+GD
Sbjct: 1938 LRLNELTKVYSGTSSP--AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGD 1995
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 679
A V GK+I ++ ++ + +G CPQ+D + LT REHL ++A L+GV E +E V +
Sbjct: 1996 ATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSI 2055
Query: 680 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 739
+GL+ + + SGG KRKLS IALIG +V+LDEPT+GMDP + R+ W I
Sbjct: 2056 QSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVS 2115
Query: 740 -IKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTL-VKSA- 796
I++GR ++LT+HSM+E E L R+AIM G+ +C G+ LK ++G GY +T+ +KS
Sbjct: 2116 IIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYIVTMKIKSPK 2175
Query: 797 ----PDASAAADIVYRHIPSALCVSEVGTEITFKLPLASSSSFESMFREIESCIRKSVSK 852
PD + + P ++ + F++ SSS +F+ + S
Sbjct: 2176 DDLLPDLNPVEQFFQGNFPGSVQRERHYNMLQFQVS---SSSLARIFQLLIS-------- 2224
Query: 853 VEADATEDTDYLGIESFGISVTTLEEVFLRVA 884
D L IE + ++ TTL++VF+ A
Sbjct: 2225 -------HKDSLLIEEYSVTQTTLDQVFVNFA 2249
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 179 bits (456), Expect = 2e-49
Identities = 95/236 (40%), Positives = 134/236 (56%), Gaps = 10/236 (4%)
Query: 1456 LSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSM 1515
+ GS+ I L + K Y K V+ L+F+V +GECFG LG NGAGK+T M
Sbjct: 33 IPGSMSTVAIDLAGVSKSYGD------KAVVNGLSFTVASGECFGLLGPNGAGKSTIARM 86
Query: 1516 ISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAE 1575
I G P G + G + + + AR IG PQFD L TV+E+L ++ R G++
Sbjct: 87 ILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMST 146
Query: 1576 YRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP 1634
R + V+ L+EF L A LSGG KR+L++A A+I DP ++ILDEP+TG+DP
Sbjct: 147 -REIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDP 205
Query: 1635 IAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
A+ +WE + L R GKT ++LTTH M EA+ LC R+ ++ G+ G P L
Sbjct: 206 HARHLIWERLRSLLAR-GKT-ILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHAL 259
|
Length = 340 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 6e-48
Identities = 70/213 (32%), Positives = 124/213 (58%), Gaps = 10/213 (4%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
++ L K Y KR ++ + L + + +I LG NGAGK+TT+ +++GLI P +G+
Sbjct: 1 LKTNDLTKTYGKKR----VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGE 56
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 679
GK+ E + +G + +P LT RE+L + A L G++++ ++ V +
Sbjct: 57 ITFDGKSYQ-KNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEV----L 111
Query: 680 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 739
D VGL D V+ S GMK++L + +AL+G+ ++ILDEPT+G+DP ++ +LI
Sbjct: 112 DVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILS 171
Query: 740 IKK-GRIILLTTHSMDEAEELGDRIAIMANGSL 771
++ G +L+++H + E +++ DRI I+ G L
Sbjct: 172 LRDQGITVLISSHLLSEIQKVADRIGIINKGKL 204
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 167 bits (426), Expect = 4e-47
Identities = 68/211 (32%), Positives = 123/211 (58%), Gaps = 8/211 (3%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+++ + K + A++ + ++ + +I LLG NGAGK+TTI M++G+I P +G+
Sbjct: 1 LEVENVTKRFGRVT----ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGE 56
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 679
L GK + R +G P+ L+P++ V + L A LKG+K+E + E +
Sbjct: 57 VLFDGKPLDI---AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWL 113
Query: 680 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 739
+ + L++ N V LS G ++K+ A+I D +++ILDEP SG+DP ++ L +I++
Sbjct: 114 ERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRE 173
Query: 740 IK-KGRIILLTTHSMDEAEELGDRIAIMANG 769
+ G+ ++L+TH M+ EEL DR+ ++ G
Sbjct: 174 LARAGKTVILSTHQMELVEELCDRVLLLNKG 204
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 169 bits (430), Expect = 4e-46
Identities = 81/197 (41%), Positives = 119/197 (60%), Gaps = 1/197 (0%)
Query: 574 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDE 633
G+ VN L T+ + LLG NGAGKST M++G+ P G V G + A
Sbjct: 52 GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARL 111
Query: 634 IRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVR 693
R +GV PQ+D L E TVRE+L +F G+ +E+V+ +++ L K + V
Sbjct: 112 ARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVS 171
Query: 694 ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK-IKKGRIILLTTHS 752
LSGGMKR+L+L ALI D +++ILDEPT+G+DP++ L W+ ++ + +G+ ILLTTH
Sbjct: 172 DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHF 231
Query: 753 MDEAEELGDRIAIMANG 769
M+EAE L DR+ ++ G
Sbjct: 232 MEEAERLCDRLCVLEAG 248
|
Length = 340 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 164 bits (418), Expect = 7e-46
Identities = 69/216 (31%), Positives = 116/216 (53%), Gaps = 8/216 (3%)
Query: 1467 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1526
L+NL YP G R A+ ++ +++ GE +G NG+GK+T L +++G PT G
Sbjct: 2 LKNLSFSYPDGAR----PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGE 57
Query: 1527 AFIFGKDIRSDP-KAARRLIGYCPQF-DALLEYLTVQEHLELYARIKGVAEYRMDDVVME 1584
+ GKD+ K RR +G Q D TV+E + G+ E +++ V E
Sbjct: 58 VLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEE 117
Query: 1585 KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVI 1644
L L + FTLSGG K+++++A + DP I++LDEP+ G+DP +R + E++
Sbjct: 118 ALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELL 177
Query: 1645 SRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQ 1680
+L +GKT +I+ TH ++ L R+ ++ G+
Sbjct: 178 KKLK-AEGKT-IIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 182 bits (462), Expect = 9e-46
Identities = 162/528 (30%), Positives = 251/528 (47%), Gaps = 78/528 (14%)
Query: 1208 AIVKEREVKAKQQQLISGVSVLSYWTSTYIWDFISFLFPSSCAIILFYIFGL-----DQF 1262
+IV E+E++ K+ GVS W T+ D S + S + +F + G D F
Sbjct: 673 SIVLEKELRLKETLKNQGVSNAVIWC-TWFLDSFSIMSMSIFLLTIFIMHGRILHYSDPF 731
Query: 1263 VGRGCLLPTVLIFLGYGLAIASSTYCLTFFFSDHTMAQNVVLLVHFFTGLILMVISFIMG 1322
+ L L + A + L+ FFS ++A +++F + + I+
Sbjct: 732 I-------LFLFLLAFSTATIMQCFLLSTFFSKASLAAACSGVIYF-----TLYLPHILC 779
Query: 1323 LLEATRSANSLLKNFFRLSPGFCFADGLASLALLR-QGMKDKTSDGVFDWNVTSASICYL 1381
R L LSP F G L QG+ + S N+ ++ +
Sbjct: 780 FAWQDRMTADLKTAVSLLSP-VAFGFGTEYLVRFEEQGLGLQWS------NIGNSPL--E 830
Query: 1382 GCESICYFLLTLGLELLPSHKWTLMTIKEWWKGTRHRLCNTPSSYLEPL-----LQ---- 1432
G E FLL++ + LL + + L+ W+ P Y PL LQ
Sbjct: 831 GDEF--SFLLSMKMMLLDAALYGLLA---WYLDQVF-----PGDYGTPLPWYFLLQESYW 880
Query: 1433 ------SSSESDTLDLNEDIDVQVER------------NRVLSGSVDNAIIYLRNLRKVY 1474
S+ E L+ E + ++E R L G V + +NL K++
Sbjct: 881 LGGEGCSTREERALEKTEPLTEEMEDPEHPEGINDSFFERELPGLVPGVCV--KNLVKIF 938
Query: 1475 -PGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKD 1533
P G+ AV L + + FLG NGAGKTTTLS+++G PT GT + GKD
Sbjct: 939 EPSGRP-----AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKD 993
Query: 1534 IRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK 1593
I ++ A R+ +G CPQ + L +LTV EH+ YA++KG + + + ME ++E L
Sbjct: 994 IETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRS-WEEAQLEMEAMLEDTGLH 1052
Query: 1594 HAK-KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1652
H + + + LSGG +RKLSVAIA +GD +V+LDEP++G+DP ++R +W+++ L R G
Sbjct: 1053 HKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLL--LKYRSG 1110
Query: 1653 KTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1700
+T +I++TH M+EA L RI I+ G+L C G+P LK FG L
Sbjct: 1111 RT-IIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFYL 1157
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 167 bits (423), Expect = 1e-45
Identities = 93/230 (40%), Positives = 133/230 (57%), Gaps = 10/230 (4%)
Query: 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY 1521
N I L + K Y KV V+ L+F++ GECFG LG NGAGK+T M+ G
Sbjct: 2 NVAIDLVGVSKSYGD------KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS 55
Query: 1522 PTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDV 1581
P G + G+ + S + AR IG PQFD L TV+E+L ++ R G++ ++ V
Sbjct: 56 PDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAV 115
Query: 1582 VMEKLVEFDLLK-HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1640
+ L+EF L+ A LSGG KR+L++A A+I DP ++ILDEP+TG+DP A+ +
Sbjct: 116 I-PSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLI 174
Query: 1641 WEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
WE + L R GKT ++LTTH M EA+ LC R+ ++ G+ G P L
Sbjct: 175 WERLRSLLAR-GKT-ILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHAL 222
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 167 bits (423), Expect = 1e-45
Identities = 83/197 (42%), Positives = 124/197 (62%), Gaps = 1/197 (0%)
Query: 574 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDE 633
G+ VN L T+ + LLG NGAGKST ML+G+I P G V G+ + +
Sbjct: 15 GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARL 74
Query: 634 IRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVR 693
R +GV PQ+D L PE TVRE+L +F G+ +E+V+ +++ L K ++ V
Sbjct: 75 ARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVA 134
Query: 694 ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK-IKKGRIILLTTHS 752
LSGGMKR+L+L ALI D +++ILDEPT+G+DP++ L W+ ++ + +G+ ILLTTH
Sbjct: 135 LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHF 194
Query: 753 MDEAEELGDRIAIMANG 769
M+EAE L DR+ ++ +G
Sbjct: 195 MEEAERLCDRLCVLESG 211
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 162 bits (412), Expect = 4e-45
Identities = 73/223 (32%), Positives = 123/223 (55%), Gaps = 6/223 (2%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1523
+I L K + AV ++F+V+ GE G LG NGAGKTTTL M++G P
Sbjct: 1 MITADALTKRF--RDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD 58
Query: 1524 DGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVM 1583
G A + G D+ +P ARR +G+ L + LT +E+LE +A + G+ + +
Sbjct: 59 AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARL- 117
Query: 1584 EKLVE-FDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1642
E+L + + + + S G ++K+++A A++ DPP+++LDEP+TG+D +A R + E
Sbjct: 118 EELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALRE 177
Query: 1643 VISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1685
I +L R ++ +TH M E + LC R+ ++ G++ G
Sbjct: 178 FIRQL--RALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 162 bits (411), Expect = 5e-45
Identities = 75/211 (35%), Positives = 122/211 (57%), Gaps = 1/211 (0%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I L K + + AV+ + T+ ++ LLG NGAGK+TT+ ML GL+ P G
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 679
A V G ++ + E R+ LG L+ LT RE+LE FA L G+K + L + + E+
Sbjct: 62 ATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELA 121
Query: 680 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 739
D +G+ + ++ V S GM++K+++ AL+ D V++LDEPT+G+D + R + I++
Sbjct: 122 DRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQ 181
Query: 740 IKK-GRIILLTTHSMDEAEELGDRIAIMANG 769
++ G+ IL +TH M E E L DR+ ++ G
Sbjct: 182 LRALGKCILFSTHIMQEVERLCDRVVVLHRG 212
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 2e-44
Identities = 76/219 (34%), Positives = 124/219 (56%), Gaps = 12/219 (5%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
+ L NL K Y + A+ ++ ++ G +G LG NGAGKTT + +++ P+
Sbjct: 1 LQLENLTKRYGKKR------ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSS 53
Query: 1525 GTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVME 1584
GT I G+D+ P+ RR IGY PQ + TV+E L+ A +KG+ + V E
Sbjct: 54 GTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDE 113
Query: 1585 KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK-RFMWEV 1643
L +L AKK +LSGG +R++ +A A++GDP I+I+DEP+ G+DP + RF +
Sbjct: 114 VLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFR-NL 172
Query: 1644 ISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLR 1682
+S L + VIL+TH + + ++LC ++ ++ G+L
Sbjct: 173 LSELGE--DRI-VILSTHIVEDVESLCNQVAVLNKGKLV 208
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 2e-44
Identities = 80/208 (38%), Positives = 115/208 (55%), Gaps = 5/208 (2%)
Query: 1478 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD 1537
KR A+ ++FSV+ GE FG LG NGAGKTTT+ MI G P G GK +
Sbjct: 8 KRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI- 66
Query: 1538 PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKK 1597
AAR IGY P+ L + V + L A++KG+ + + E L +L ++A K
Sbjct: 67 --AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANK 124
Query: 1598 PSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVI 1657
LS GN++K+ A+I DP ++ILDEP +G+DP+ + +VI L+ R GKT VI
Sbjct: 125 RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELA-RAGKT-VI 182
Query: 1658 LTTHSMNEAQALCTRIGIMVGGQLRCIG 1685
L+TH M + LC R+ ++ G+ G
Sbjct: 183 LSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 3e-44
Identities = 81/211 (38%), Positives = 125/211 (59%), Gaps = 5/211 (2%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I R + K Y G+ V+ L + + LLG NGAGK+TT+ ML+GL P G
Sbjct: 8 IDFRNVEKRY----GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGS 63
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 679
+ G+ + + R+ +GV PQ+D L P+ TVRE+L +F G+ ++V ++
Sbjct: 64 ISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLL 123
Query: 680 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 739
+ L +K + V LSGGMKR+L+L AL+ D V++LDEPT+G+DP + L W+ ++
Sbjct: 124 EFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRS 183
Query: 740 I-KKGRIILLTTHSMDEAEELGDRIAIMANG 769
+ +G+ ILLTTH M+EAE L DR+ ++ G
Sbjct: 184 LLARGKTILLTTHFMEEAERLCDRLCVIEEG 214
|
Length = 306 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 159 bits (406), Expect = 3e-44
Identities = 70/209 (33%), Positives = 123/209 (58%), Gaps = 13/209 (6%)
Query: 569 YATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT 628
++ G A++ + LT+ + + + ++G NG+GKST + +L GL+ PT+G+ LV GK++T
Sbjct: 7 FSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLT 66
Query: 629 A-DMDEIRKGLGVCPQYDILFPE-----LTVREHLEMFAVLK-GVKEELLESVVAEMVDE 681
+ E+R+ +G+ Q P+ TV E + F + G+ EE +E V E ++
Sbjct: 67 KLSLKELRRKVGLVFQ----NPDDQFFGPTVEEEV-AFGLENLGLPEEEIEERVEEALEL 121
Query: 682 VGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK 741
VGL + LSGG K+++++ L D +++LDEPT+G+DP R +L+KK+K
Sbjct: 122 VGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLK 181
Query: 742 K-GRIILLTTHSMDEAEELGDRIAIMANG 769
G+ I++ TH +D EL DR+ ++ +G
Sbjct: 182 AEGKTIIIVTHDLDLLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 8e-43
Identities = 82/229 (35%), Positives = 126/229 (55%), Gaps = 9/229 (3%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
I N+ K Y GGK AV++L + GE +G +G+GKTTT+ MI+ PT
Sbjct: 1 IEFENVTKRYGGGK-----KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTS 55
Query: 1525 GTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVM 1583
G FI G+DIR DP RR IGY Q L ++TV+E++ L ++ + ++ +
Sbjct: 56 GEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERAD 115
Query: 1584 E--KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMW 1641
E LV D + A + LSGG ++++ VA A+ DPP++++DEP +DPI + +
Sbjct: 116 ELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQ 175
Query: 1642 EVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
E RL GKT ++ TH ++EA L RI IM G++ +G+P +
Sbjct: 176 EEFKRLQQELGKT-IVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 5e-42
Identities = 78/218 (35%), Positives = 117/218 (53%), Gaps = 13/218 (5%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
+ +L K Y G KR + ++ V+ GE +GFLG NGAGKTTT+ +I G P
Sbjct: 1 LKTNDLTKTY-GKKR-----VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDS 54
Query: 1525 GTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVME 1584
G GK A R IG + LT +E+L L AR+ G+ + R + E
Sbjct: 55 GEITFDGKSY-QKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKR----IDE 109
Query: 1585 KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVI 1644
L L AKK S G K++L +A+A++G+P ++ILDEP+ G+DP + + E+I
Sbjct: 110 VLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELI 169
Query: 1645 SRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLR 1682
L QG T V++++H ++E Q + RIGI+ G+L
Sbjct: 170 LSLR-DQGIT-VLISSHLLSEIQKVADRIGIINKGKLI 205
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 6e-42
Identities = 72/218 (33%), Positives = 123/218 (56%), Gaps = 4/218 (1%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+++ L K Y +K AV + E +I LLG NGAGK+T + M+ L+ P +G
Sbjct: 2 LEVTDLTKSYGSKVQ---AVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGK 58
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 679
+ G + D +R+ +GV L+ LT RE+L+ FA L G+ + +++ +AE+
Sbjct: 59 VTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELS 118
Query: 680 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 739
+ L + ++ V S GMK+K+++ AL+ D +++LDEPTSG+D + R IK+
Sbjct: 119 KRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQ 178
Query: 740 IK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
+K +GR ++ ++H M E E L DR+ ++ G + GS
Sbjct: 179 LKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGS 216
|
Length = 245 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 9e-42
Identities = 78/235 (33%), Positives = 118/235 (50%), Gaps = 14/235 (5%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1523
+I N+ K Y K AV + +++ GE +G +G+GKTTTL MI+ PT
Sbjct: 1 MIEFENVSKRYGN------KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT 54
Query: 1524 DGTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV 1582
G I G+DI DP RR IGY Q L +LTV E++ ++ G + R+
Sbjct: 55 SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRA 114
Query: 1583 MEKLVEFDL----LKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKR 1638
E L L + P LSGG ++++ VA A+ DPPI+++DEP +DPI ++
Sbjct: 115 DELLDLVGLDPSEYAD-RYPH-ELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRK 172
Query: 1639 FMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693
+ E I L GKT ++ TH ++EA L RI +M G++ +P +
Sbjct: 173 QLQEEIKELQKELGKT-IVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226
|
Length = 309 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 154 bits (392), Expect = 2e-41
Identities = 76/210 (36%), Positives = 131/210 (62%), Gaps = 4/210 (1%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I++ L K+Y T+ A++ + + +I+ LG NGAGKSTT+ ++ G +PP +G
Sbjct: 3 IRVSSLTKLYGTQN----ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGS 58
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 679
V G+++ + E+++ +G P+++ L+ ++ VRE+L+ A + G+K +LL+ V EM+
Sbjct: 59 VQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMI 118
Query: 680 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 739
+ VGL + + + LS G ++++ L ALI D KV+ILDEPT+G+DP + +IK
Sbjct: 119 ELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKN 178
Query: 740 IKKGRIILLTTHSMDEAEELGDRIAIMANG 769
I K + I+L+TH M E E + DR+ I+ G
Sbjct: 179 IGKDKTIILSTHIMQEVEAICDRVIIINKG 208
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 4e-41
Identities = 68/211 (32%), Positives = 116/211 (54%), Gaps = 6/211 (2%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+++R + K Y G A+ + L++ E + +AL+G +G GKST + ++ GL PT+G+
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 679
LV G+ +T G Q D L P LTV +++ + L+GV + E++
Sbjct: 61 VLVDGEPVT----GPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELL 116
Query: 680 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 739
+ VGL+ N LSGGM+++++L AL D V++LDEP S +D + + +
Sbjct: 117 ELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLD 176
Query: 740 I--KKGRIILLTTHSMDEAEELGDRIAIMAN 768
I + G+ +LL TH +DEA L DR+ +++
Sbjct: 177 IWRETGKTVLLVTHDIDEAVFLADRVVVLSA 207
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 151 bits (385), Expect = 6e-41
Identities = 72/226 (31%), Positives = 132/226 (58%), Gaps = 14/226 (6%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I++R + K G+ ++ + L + +ILA+LG +G+GKST + +++GL+ P G+
Sbjct: 9 IEVRGVTK----SFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGE 64
Query: 620 ALVFGKNI----TADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVL--KGVKEELLES 673
L+ G++I ++ EIRK +GV Q LF LTV E++ F + + E L+
Sbjct: 65 ILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENV-AFPLREHTKLPESLIRE 123
Query: 674 VVAEMVDEVGL-ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRL 732
+V ++ VGL ++ LSGGM+++++L A+ D +++ LDEPTSG+DP S +
Sbjct: 124 LVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGV 183
Query: 733 TWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
+LI+++ G +++ TH +D + DR+A++A+G + G+
Sbjct: 184 IDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGT 229
|
Length = 263 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 148 bits (377), Expect = 4e-40
Identities = 72/224 (32%), Positives = 128/224 (57%), Gaps = 25/224 (11%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I++R L K + + + + L + +ILA++G +G+GKST + ++VGL+ P +G+
Sbjct: 1 IELRGLTKSFGGRT----VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGE 56
Query: 620 ALVFGKNIT----ADMDEIRKGLGVCPQYDILFPELTV--------REHLEMFAVLKGVK 667
L+ G++I+ A++ +R+ +G+ Q LF LTV REH +
Sbjct: 57 VLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRL-------S 109
Query: 668 EELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP 727
EE + +V E ++ VGL ++ LSGGMK++++L AL D ++++ DEPT+G+DP
Sbjct: 110 EEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDP 169
Query: 728 YSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANG 769
+ + LI+ +KK G ++ TH +D A + DRIA++ +G
Sbjct: 170 IASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDG 213
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 4e-40
Identities = 67/227 (29%), Positives = 128/227 (56%), Gaps = 8/227 (3%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
++I + K + K+ AV+++ + +I LLG NGAGK+TT M++GL+ PT G+
Sbjct: 3 LEIEGVTKSFGDKK----AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGE 58
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 679
G ++ EI+ +G P+ L+P++TV + L+ A LKG+ + ++ + +
Sbjct: 59 ITWNGGPLSQ---EIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWL 115
Query: 680 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 739
+ + + K ++ LS G ++K+ A+I + +++ILDEP SG+DP ++ L I +
Sbjct: 116 ERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFE 175
Query: 740 IK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 785
+K +G I+ ++H M+ EEL DR+ ++ G G+ ++ +G
Sbjct: 176 LKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222
|
Length = 300 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 2e-39
Identities = 72/226 (31%), Positives = 121/226 (53%), Gaps = 19/226 (8%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+++R L K + G A++ + ++ +I L+G NGAGK+T +++ G + PT+G
Sbjct: 1 LEVRGLTKRF----GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGS 56
Query: 620 ALVFGKNITA-DMDEI-RKGLGVCPQYDILFPELTVREHLEM-----------FAVLKGV 666
L G++IT EI R G+G Q LFPELTV E++ + A +
Sbjct: 57 VLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARRE 116
Query: 667 KEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 726
+ E E E+++ VGLAD + LS G +R+L + AL D K+++LDEP +G++
Sbjct: 117 EREARERA-EELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLN 175
Query: 727 PYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSL 771
P +LI++++ +G +LL H MD L DR+ ++ G +
Sbjct: 176 PEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRV 221
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 3e-39
Identities = 76/216 (35%), Positives = 117/216 (54%), Gaps = 3/216 (1%)
Query: 1485 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1544
AV ++F + GE G LG NGAGKTT L MI+ P G I G D DP RR
Sbjct: 17 AVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRK 76
Query: 1545 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSG 1604
IG L LT +E+L+ +AR+ G++ + + E LL++ + S
Sbjct: 77 IGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFST 136
Query: 1605 GNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMN 1664
G K+K+++A A++ DP I++LDEP++G+D +R + I +L +G+ AVI ++H M
Sbjct: 137 GMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK-NEGR-AVIFSSHIMQ 194
Query: 1665 EAQALCTRIGIMVGGQLRCIGSPQHLKTRFG-NFLE 1699
E +ALC R+ ++ G++ GS + L R LE
Sbjct: 195 EVEALCDRVIVLHKGEVVLEGSIEALDARTVLRNLE 230
|
Length = 245 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 3e-39
Identities = 66/228 (28%), Positives = 113/228 (49%), Gaps = 9/228 (3%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1523
+I NL YPG K A+ ++ ++ GE +G NG+GK+T L +++G PT
Sbjct: 3 MIEAENLSFRYPGRKA-----ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT 57
Query: 1524 DGTAFIFGKDIRS--DPKAARRLIGYCPQF-DALLEYLTVQEHLELYARIKGVAEYRMDD 1580
G + G D S R+ +G Q D L TV++ + G+ +++
Sbjct: 58 SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEE 117
Query: 1581 VVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1640
V E L L + +P F LSGG K+++++A + P I++LDEP+ G+DP +R +
Sbjct: 118 RVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRREL 177
Query: 1641 WEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1688
E++ +L GKT +I+ TH + R+ ++ G++ G P
Sbjct: 178 LELLKKLKEEGGKT-IIIVTHDLELVLEYADRVVVLDDGKILADGDPA 224
|
Length = 235 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 5e-39
Identities = 71/223 (31%), Positives = 116/223 (52%), Gaps = 13/223 (5%)
Query: 1478 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD 1537
K K AV +++F V GE FG LG NGAGKTTT MI G PT+G G +
Sbjct: 10 KSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS-- 67
Query: 1538 PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGV----AEYRMDDVVMEKLVEFDLLK 1593
+ + IGY P+ L +TV++ L+ A +KG+ + ++ +E+ +++
Sbjct: 68 -QEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQA-WLER---LEIVG 122
Query: 1594 HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGK 1653
K LS GN++K+ A+I +P ++ILDEP +G+DP+ + + I L G
Sbjct: 123 KKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEE-GA 181
Query: 1654 TAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN 1696
T +I ++H M + LC R+ ++ GQ G+ + ++ FG
Sbjct: 182 T-IIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGK 223
|
Length = 300 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 144 bits (367), Expect = 5e-39
Identities = 70/219 (31%), Positives = 110/219 (50%), Gaps = 8/219 (3%)
Query: 1467 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1526
L+ L K Y A+ L+ +V+ GE LG +G GKTT L +I+G E P G
Sbjct: 3 LKGLSKTYGS------VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGE 56
Query: 1527 AFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKL 1586
I G+D+ + RR IG Q AL +LTV E++ +++GV + + V E L
Sbjct: 57 ILIDGRDV-TGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELL 115
Query: 1587 VEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISR 1646
L + LSGG ++++++A A+ +P +++LDEP + +D + + E +
Sbjct: 116 ELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKE 175
Query: 1647 LSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1685
L G T I TH EA AL RI +M G++ +G
Sbjct: 176 LQRELGITT-IYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 6e-39
Identities = 58/212 (27%), Positives = 112/212 (52%), Gaps = 10/212 (4%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
++I + K + + + L++ + + +A+LG +G GKST + ++ GL PT+G+
Sbjct: 4 LEIEGVSKSFGGVE----VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGE 59
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 679
L+ G+ +T +G Q D L P LTV +++ + L+G + E++
Sbjct: 60 VLLDGRPVT----GPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELL 115
Query: 680 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 739
+ VGLA + LSGGM++++++ AL K+++LDEP +D + + +
Sbjct: 116 ELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLR 175
Query: 740 I--KKGRIILLTTHSMDEAEELGDRIAIMANG 769
+ + + +LL TH +DEA L DR+ +++N
Sbjct: 176 LWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 9e-39
Identities = 71/215 (33%), Positives = 124/215 (57%), Gaps = 13/215 (6%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
++++ L K Y + R A++ L LT+ + LALLG +G GK+T + ++ GL P +G+
Sbjct: 1 LELKGLSKTYGSVR----ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGE 56
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 679
L+ G+++T + R+ +G+ Q LFP LTV E++ L+GV + + + V E++
Sbjct: 57 ILIDGRDVT-GVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELL 115
Query: 680 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 739
+ VGL +N LSGG +++++L AL + +++LDEP S +D +L +L ++
Sbjct: 116 ELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDA---KLREELREE 172
Query: 740 IKK-----GRIILLTTHSMDEAEELGDRIAIMANG 769
+K+ G + TH +EA L DRIA+M G
Sbjct: 173 LKELQRELGITTIYVTHDQEEALALADRIAVMNEG 207
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 2e-38
Identities = 80/228 (35%), Positives = 126/228 (55%), Gaps = 10/228 (4%)
Query: 1467 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1526
NL K Y GKR V+ ++ SV+ GE G LG NGAGKTTT MI G P G
Sbjct: 3 AENLSKRY--GKR----KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGK 56
Query: 1527 AFIFGKDIRSDP--KAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVME 1584
+ G+DI P K AR IGY PQ ++ LTV+E++ I+G+++ ++ + E
Sbjct: 57 ILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEE 116
Query: 1585 KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVI 1644
L EF + K + +LSGG +R++ +A A+ +P ++LDEP G+DPIA + + ++I
Sbjct: 117 LLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKII 176
Query: 1645 SRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692
L R V++T H++ E ++ R I+ G++ G+P+ +
Sbjct: 177 KILKDR--GIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 3e-38
Identities = 73/230 (31%), Positives = 121/230 (52%), Gaps = 12/230 (5%)
Query: 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1522
A + L+N+RK + + + + ++ GE LG +G GK+T L MI+G E P
Sbjct: 2 AELELKNVRKSFG------SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEP 55
Query: 1523 TDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV 1582
T G I G+D+ P R I Q AL ++TV E++ +++GV + +D V
Sbjct: 56 TSGEILIDGRDVTDLPPEKRG-IAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRV 114
Query: 1583 ME--KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1640
E KL+ + L + +KP LSGG ++++++A A++ P + +LDEP + +D + M
Sbjct: 115 KEVAKLLGLEHLLN-RKPL-QLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLM 172
Query: 1641 WEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
I +L R G T + TH EA L RI +M G+++ +G+P L
Sbjct: 173 RSEIKKLHERLGTTTIY-VTHDQVEAMTLADRIVVMNDGRIQQVGTPLEL 221
|
Length = 338 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 141 bits (359), Expect = 1e-37
Identities = 75/235 (31%), Positives = 122/235 (51%), Gaps = 16/235 (6%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHS-LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1523
I LR L K + GG+ V + V+ GE +G +G+GK+T L +I G P
Sbjct: 1 IELRGLTKSF-GGRT------VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD 53
Query: 1524 DGTAFIFGKDI----RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGV-AEYRM 1578
G I G+DI ++ RR +G Q AL + LTV E++ R +E +
Sbjct: 54 SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEI 113
Query: 1579 DDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK 1637
++V+EKL L P+ LSGG K+++++A A+ DP +++ DEP+ G+DPIA
Sbjct: 114 REIVLEKLEAVGLRGAEDLYPA-ELSGGMKKRVALARALALDPELLLYDEPTAGLDPIAS 172
Query: 1638 RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692
+ ++I L G T I+ TH ++ A A+ RI ++ G++ G+P+ L+
Sbjct: 173 GVIDDLIRSLKKELGLT-SIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 2e-37
Identities = 63/222 (28%), Positives = 108/222 (48%), Gaps = 9/222 (4%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
I L+NL K Y GG A+ ++ S++ GE +G +G+GK+T L+++ G + PT
Sbjct: 1 IELKNLSKTYGGGGEK--VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTS 58
Query: 1525 GTAFIFGKDIRSDPKAARRL-----IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMD 1579
G + G DI + IG+ Q LL LT E++EL + GV +
Sbjct: 59 GEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERR 118
Query: 1580 DVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF 1639
+ E L L LSGG ++++++A A+ DP I++ DEP+ +D +
Sbjct: 119 ERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKE 178
Query: 1640 MWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
+ E++ L+ G T +++ TH A+ RI + G++
Sbjct: 179 VMELLRELNKEAGTT-IVVVTHDPELAE-YADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 4e-37
Identities = 66/212 (31%), Positives = 112/212 (52%), Gaps = 7/212 (3%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
+ +RN+ K Y GG A A+ ++ SV+ GE +G +G GK+T L +I+G E PT
Sbjct: 1 LEVRNVSKTYGGGGG--AVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTS 58
Query: 1525 GTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVME 1584
G + G+ + GY Q DALL +LTV +++ L ++GV + + E
Sbjct: 59 GEVLVDGEPVT----GPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEE 114
Query: 1585 KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVI 1644
L L LSGG ++++++A A+ DP +++LDEP + +D + + + E +
Sbjct: 115 LLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEEL 174
Query: 1645 SRLSTRQGKTAVILTTHSMNEAQALCTRIGIM 1676
+ GKT V+L TH ++EA L R+ ++
Sbjct: 175 LDIWRETGKT-VLLVTHDIDEAVFLADRVVVL 205
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 139 bits (354), Expect = 4e-37
Identities = 61/223 (27%), Positives = 118/223 (52%), Gaps = 11/223 (4%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
++++ L + T G+ A++ + ++ + + L L+G +G+GKST ++GL+ PT+G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 620 ALVFGKNITADMDEI----RKGLGVCPQ--YDILFPELTVREHLE--MFAVLKGVKEELL 671
+ GK++ + RK + + Q L P +T+ E + + K K+E
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEAR 121
Query: 672 ESVVAEMVDEVGLADKV-NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSM 730
+ V ++ VGL ++V N LSGG ++++++ AL + K++I DEPTS +D
Sbjct: 122 KEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQ 181
Query: 731 RLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSL 771
L+KK+++ G +L TH + ++ DR+A+M G +
Sbjct: 182 AQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKI 224
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 4e-37
Identities = 70/235 (29%), Positives = 118/235 (50%), Gaps = 12/235 (5%)
Query: 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1522
++ + NL Y G K + L+FS+ GE G LG NG+GK+T L ++G P
Sbjct: 1 MMLEVENLSFGYGG------KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP 54
Query: 1523 TDGTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLEL--YARIKGVAEYRMD 1579
G + GKDI S PK + + Y PQ + LTV E + L Y + +
Sbjct: 55 KSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKE 114
Query: 1580 D--VVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK 1637
D +V E L L A +P LSGG ++++ +A A+ + PI++LDEP++ +D +
Sbjct: 115 DEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQ 174
Query: 1638 RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692
+ E++ L+ +G T V++ H +N A + ++ G++ G+P+ + T
Sbjct: 175 IEVLELLRDLNREKGLT-VVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228
|
Length = 258 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 6e-37
Identities = 72/207 (34%), Positives = 115/207 (55%), Gaps = 3/207 (1%)
Query: 1485 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1544
A+ ++F Q G GFLG NGAGK+TT+ +I+G P G+ + G+D+ +PK +R
Sbjct: 17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRN 76
Query: 1545 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSG 1604
IGY P+ + L + V+E+L+ A I G+ + V E + L K LS
Sbjct: 77 IGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSK 136
Query: 1605 GNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMN 1664
G ++++ +A A+I DP ++ILDEP+TG+DP + VI + + KT +IL+TH M
Sbjct: 137 GYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG--KDKT-IILSTHIMQ 193
Query: 1665 EAQALCTRIGIMVGGQLRCIGSPQHLK 1691
E +A+C R+ I+ G++ L
Sbjct: 194 EVEAICDRVIIINKGKIVADKKLDELS 220
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 6e-37
Identities = 78/232 (33%), Positives = 121/232 (52%), Gaps = 12/232 (5%)
Query: 1461 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE 1520
D + + NL K Y KR KV V+ ++ V +GE G LG NGAGKTTT MI G
Sbjct: 1 DMSTLVAENLAKSY--KKR---KV-VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLV 54
Query: 1521 YPTDGTAFIFGKDIRSDP--KAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVA-EYR 1577
P G + +DI P K AR IGY PQ ++ LTV++++ I+ +
Sbjct: 55 RPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKA 114
Query: 1578 MDDVVMEKLV-EFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIA 1636
++ L+ EF + +++LSGG +R++ +A A+ +P ++LDEP G+DPIA
Sbjct: 115 ERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIA 174
Query: 1637 KRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1688
+ +I L R V++T H++ E +C R I+ G++ GSP+
Sbjct: 175 VIDIQRIIKHLKDR--GIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPE 224
|
Length = 243 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 7e-37
Identities = 64/218 (29%), Positives = 121/218 (55%), Gaps = 13/218 (5%)
Query: 568 VYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI 627
+ G A+ + L + + + + L+G NG+GKST + +L GL+ PT+G+ LV G +
Sbjct: 9 LSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDT 68
Query: 628 TADMD--EIRKGLGVCPQYDILFPEL-----TVREHLEMFAVLKGVKEELLESVVAEMVD 680
+++ E+R+ +G+ Q P+ TV + + G+ E +E VAE ++
Sbjct: 69 SSEKSLLELRQKVGLVFQ----NPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALE 124
Query: 681 EVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI 740
VGL + ++ LSGG K+++++ L ++++LDEPT+G+DP R +L+KK+
Sbjct: 125 LVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKL 184
Query: 741 KK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
K+ G+ I++ TH ++ E DR+ ++ +G + G
Sbjct: 185 KEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGD 222
|
Length = 235 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 9e-37
Identities = 57/215 (26%), Positives = 101/215 (46%), Gaps = 60/215 (27%)
Query: 1467 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1526
+ NL Y G + A+ +++ +++AGE +G NG+GK+T L I+G PT G
Sbjct: 2 IENLSFRYGG------RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGE 55
Query: 1527 AFIFGKDI-RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEK 1585
I GKDI + + RR IGY PQ
Sbjct: 56 ILIDGKDIAKLPLEELRRRIGYVPQ----------------------------------- 80
Query: 1586 LVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVIS 1645
LSGG ++++++A A++ +P +++LDEP++G+DP ++ + E++
Sbjct: 81 ----------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLR 124
Query: 1646 RLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQ 1680
L+ +G+T VI+ TH A+ R+ ++ G+
Sbjct: 125 ELA-EEGRT-VIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 1e-36
Identities = 57/227 (25%), Positives = 110/227 (48%), Gaps = 12/227 (5%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1523
++ ++NL +P G S A+ ++FS++ GE G +G +G+GK+T I G PT
Sbjct: 1 LLEVKNLSVSFPTGGGS--VKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT 58
Query: 1524 DGTAFIFGKDI----RSDPKAARRLIGYCPQ--FDALLEYLTVQEHLE--LYARIKGVAE 1575
G+ GKD+ R K R+ I Q +L +T+ E + L K +
Sbjct: 59 SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKK 118
Query: 1576 YRMDDVVMEKLVEFDLLK-HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP 1634
+ V+ LV L + + LSGG ++++++A A+ +P ++I DEP++ +D
Sbjct: 119 EARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDV 178
Query: 1635 IAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
+ + +++ +L G ++ TH + + R+ +M G++
Sbjct: 179 SVQAQILDLLKKLQEELG-LTLLFITHDLGVVAKIADRVAVMYAGKI 224
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 4e-36
Identities = 75/217 (34%), Positives = 128/217 (58%), Gaps = 9/217 (4%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I+ + K Y K+ AV+ + LT+ E + L L+G +G+GK+TT+ M+ LI PT+G+
Sbjct: 2 IEFENVSKRYGNKK----AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGE 57
Query: 620 ALVFGKNI-TADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEM 678
L+ G++I D E+R+ +G Q LFP LTV E++ L G +E ++ E+
Sbjct: 58 ILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADEL 117
Query: 679 VDEVGL--ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQL 736
+D VGL ++ + LSGG ++++ + AL D ++++DEP +DP + + +
Sbjct: 118 LDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEE 177
Query: 737 IKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSL 771
IK+++K G+ I+ TH +DEA +L DRIA+M G +
Sbjct: 178 IKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEI 214
|
Length = 309 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 5e-36
Identities = 58/211 (27%), Positives = 106/211 (50%), Gaps = 57/211 (27%)
Query: 561 QIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDA 620
+I L Y + A++++ LTL +I+AL+G NG+GKST + + GL+ PT+G+
Sbjct: 1 EIENLSFRYGGRT----ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEI 56
Query: 621 LVFGKNITA-DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 679
L+ GK+I ++E+R+ +G PQ
Sbjct: 57 LIDGKDIAKLPLEELRRRIGYVPQ------------------------------------ 80
Query: 680 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 739
LSGG +++++L AL+ + +++LDEPTSG+DP S +L+++
Sbjct: 81 ---------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRE 125
Query: 740 I-KKGRIILLTTHSMDEAEELGDRIAIMANG 769
+ ++GR +++ TH + AE DR+ ++ +G
Sbjct: 126 LAEEGRTVIIVTHDPELAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 1e-35
Identities = 67/215 (31%), Positives = 119/215 (55%), Gaps = 12/215 (5%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+++ L+ Y G + + LT+ E +I+ALLG NGAGK+T + ++GL+PP +G
Sbjct: 1 LEVENLNAGY----GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGS 56
Query: 620 ALVFGKNIT-ADMDEI-RKGLGVCPQYDILFPELTVREHLEM--FAVLKGVKEELLESVV 675
G++IT E R G+G P+ +FPELTV E+L + +A + ++ LE V
Sbjct: 57 IRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVY 116
Query: 676 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ 735
E+ L ++ + LSGG ++ L++ AL+ K+++LDEP+ G+ P + ++
Sbjct: 117 -ELFPR--LKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFE 173
Query: 736 LIKKIKKGRI-ILLTTHSMDEAEELGDRIAIMANG 769
I++++ + ILL + A E+ DR ++ G
Sbjct: 174 AIRELRDEGVTILLVEQNARFALEIADRAYVLERG 208
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 2e-35
Identities = 67/218 (30%), Positives = 110/218 (50%), Gaps = 49/218 (22%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
++++ + K Y K +N + L + +I+ALLG +G+GKST + + GL P +G
Sbjct: 1 LELKNVSKRYGQKT----VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGS 56
Query: 620 ALVFGKNITADMDEI---RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVA 676
L+ G+++T DE+ R+ +G+ Q LFP LTV E
Sbjct: 57 ILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLE--------------------- 95
Query: 677 EMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP---YSMRLT 733
NI + LSGG +++++L AL D V++LDEPTS +DP +R
Sbjct: 96 ------------NIAL-GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVR-- 140
Query: 734 WQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANG 769
L+K ++ G ++L TH +DEA L DR+ ++ +G
Sbjct: 141 -ALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 7e-35
Identities = 62/214 (28%), Positives = 108/214 (50%), Gaps = 11/214 (5%)
Query: 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1522
A++ + + K + G + + SV+ GE LG +G GK+T L +I+G E P
Sbjct: 2 ALLEIEGVSKSFGG------VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP 55
Query: 1523 TDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV 1582
T G + G+ + IGY Q DALL +LTV +++ L ++G ++ +
Sbjct: 56 TSGEVLLDGRPV----TGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERA 111
Query: 1583 MEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1642
E L L K LSGG ++++++A A+ P +++LDEP +D + + + +
Sbjct: 112 KELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQD 171
Query: 1643 VISRLSTRQGKTAVILTTHSMNEAQALCTRIGIM 1676
+ RL KT V+L TH ++EA L R+ ++
Sbjct: 172 ELLRLWEETRKT-VLLVTHDVDEAVYLADRVVVL 204
|
Length = 248 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 7e-35
Identities = 74/219 (33%), Positives = 125/219 (57%), Gaps = 15/219 (6%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
++ L K Y + VN + L++ + +I+ LLG NGAGK+TT M+VGL+ P +G
Sbjct: 1 LRAENLSKRYGKR----KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGK 56
Query: 620 ALVFGKNITAD-MDE-IRKGLGVCPQYDILFPELTVREH----LEMFAVLKGVKEELLES 673
L+ G++IT M + R G+G PQ +F +LTV E+ LE+ + K +EE LE
Sbjct: 57 ILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLE- 115
Query: 674 VVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLT 733
E+++E + +LSGG +R++ + AL + K ++LDEP +G+DP +++
Sbjct: 116 ---ELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDI 172
Query: 734 WQLIKKIKKGRI-ILLTTHSMDEAEELGDRIAIMANGSL 771
++IK +K I +L+T H++ E + DR I+ G +
Sbjct: 173 QKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKV 211
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 9e-35
Identities = 69/242 (28%), Positives = 118/242 (48%), Gaps = 15/242 (6%)
Query: 1458 GSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMIS 1517
+ +I +R + K D + + + V GE LG +G+GK+T L +I
Sbjct: 2 SASPEPLIEVRGVTK-----SFGDRVI-LDGVDLDVPRGEILAILGGSGSGKSTLLRLIL 55
Query: 1518 GEEYPTDGTAFIFGKDI----RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYAR-IKG 1572
G P G I G+DI + R+ +G Q AL LTV E++ R
Sbjct: 56 GLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTK 115
Query: 1573 VAEYRMDDVVMEKL--VEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPST 1630
+ E + ++V+ KL V PS LSGG ++++++A A+ DP ++ LDEP++
Sbjct: 116 LPESLIRELVLMKLELVGLRGAAADLYPS-ELSGGMRKRVALARAIALDPELLFLDEPTS 174
Query: 1631 GMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
G+DPI+ + E+I L+ G T VI+ TH ++ + R+ ++ G++ G+P+ L
Sbjct: 175 GLDPISAGVIDELIRELNDALGLT-VIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233
Query: 1691 KT 1692
Sbjct: 234 LA 235
|
Length = 263 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 1e-34
Identities = 74/226 (32%), Positives = 122/226 (53%), Gaps = 14/226 (6%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1523
+I L+N+ K+Y G + A+ + ++AGE +G +G+GK+T L+++ G + PT
Sbjct: 1 MIELKNVSKIYGLGG--EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT 58
Query: 1524 DGTAFIFGKDIR--SDPKAA---RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRM 1578
G I GKD+ S+ + A R+ IG+ Q LL LTV E++EL I G + R
Sbjct: 59 SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRR 118
Query: 1579 DDVVMEKLVEFDL--LKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTG-MDPI 1635
E L L KKPS LSGG ++++++A A+I +P I++ DEP TG +D
Sbjct: 119 KRAAEELLEVLGLEDRLLKKKPS-ELSGGQQQRVAIARALINNPKIILADEP-TGNLDSK 176
Query: 1636 AKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
+ + E++ L+ +GKT +I+ TH A R+ + G++
Sbjct: 177 TAKEVLELLRELNKERGKT-IIMVTHDPELA-KYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 2e-34
Identities = 73/218 (33%), Positives = 121/218 (55%), Gaps = 10/218 (4%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I+ + K Y G AVN+L L + + + L L+G +G+GK+TT+ M+ LI PT+G+
Sbjct: 1 IEFENVTKRY---GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGE 57
Query: 620 ALVFGKNITA-DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEM 678
+ G++I D E+R+ +G Q LFP +TV E++ + L +E + E+
Sbjct: 58 IFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADEL 117
Query: 679 VDEVGLADKVNIVVR---ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ 735
+ VGL D R LSGG ++++ + AL D ++++DEP +DP + +
Sbjct: 118 LALVGL-DPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQE 176
Query: 736 LIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSL 771
K++++ G+ I+ TH +DEA L DRIAIM NG +
Sbjct: 177 EFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEI 214
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 2e-34
Identities = 69/218 (31%), Positives = 124/218 (56%), Gaps = 6/218 (2%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I+++ + KV+ G A+ + L++ + +I ++G +GAGKST I + GL PT+G
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 620 ALVFGKNIT----ADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVV 675
LV G ++T ++ + R+ +G+ Q+ L TV E++ + + GV + +E V
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERV 121
Query: 676 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ 735
E+++ VGL DK + LSGG K+++ + AL + KV++ DE TS +DP + +
Sbjct: 122 LELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILA 181
Query: 736 LIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSL 771
L++ I + G I+L TH M+ + + DR+A+M G +
Sbjct: 182 LLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEV 219
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 3e-34
Identities = 67/218 (30%), Positives = 122/218 (55%), Gaps = 15/218 (6%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
++++ + K + G+ + + L + + + + LLG +G GKST + M+ GL PT+G+
Sbjct: 4 LELKNVRKSF----GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE 59
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAV-LKGVKEELLESVVAEM 678
L+ G+++T D+ ++G+ + Q L+P +TV E++ F + L+GV + ++ V E+
Sbjct: 60 ILIDGRDVT-DLPPEKRGIAMVFQNYALYPHMTVYENIA-FGLKLRGVPKAEIDKRVKEV 117
Query: 679 VDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQL-- 736
+GL +N LSGG +++++L AL+ KV +LDEP S +D +L +
Sbjct: 118 AKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDA---KLRVLMRS 174
Query: 737 -IKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSL 771
IKK+ + G + TH EA L DRI +M +G +
Sbjct: 175 EIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRI 212
|
Length = 338 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 7e-34
Identities = 62/219 (28%), Positives = 109/219 (49%), Gaps = 44/219 (20%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
+ L+N+ K Y K ++ ++ +++AGE LG +G+GK+T L I+G E P
Sbjct: 1 LELKNVSKRYGQ------KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDS 54
Query: 1525 GTAFIFGKDI---RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDV 1581
G+ I G+D+ + RR IG Q AL +LTV E++
Sbjct: 55 GSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENI----------------- 97
Query: 1582 VMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMW 1641
+ LSGG ++++++A A+ DP +++LDEP++ +DPI +R +
Sbjct: 98 -----------------ALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVR 140
Query: 1642 EVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQ 1680
++ L + G T V+L TH ++EA L R+ ++ G+
Sbjct: 141 ALLKSLQAQLGIT-VVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 1e-33
Identities = 60/205 (29%), Positives = 109/205 (53%), Gaps = 17/205 (8%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMD--EIRK 636
++ L ++ + +I +LG NG+GKST + L GL+ P +G+ L+ GK+I A + E+ K
Sbjct: 18 LDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDI-ASLSPKELAK 76
Query: 637 GLGVCPQYDILFPELTVRE--------HLEMFAVLKGVKEELLESVVAEMVDEVGLADKV 688
L PQ LTV E HL +F KE+ E +V E ++ +GL
Sbjct: 77 KLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPS--KED--EEIVEEALELLGLEHLA 132
Query: 689 NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI--KKGRII 746
+ V LSGG ++++ + AL ++ +++LDEPTS +D +L++ + +KG +
Sbjct: 133 DRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTV 192
Query: 747 LLTTHSMDEAEELGDRIAIMANGSL 771
++ H ++ A D + ++ +G +
Sbjct: 193 VMVLHDLNLAARYADHLILLKDGKI 217
|
Length = 258 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 1e-33
Identities = 68/212 (32%), Positives = 106/212 (50%), Gaps = 11/212 (5%)
Query: 1485 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDP--KAAR 1542
+ ++ +V GE LG NGAGKTT L I G P G+ G+DI P + AR
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74
Query: 1543 RLIGYCPQFDALLEYLTVQEHLEL--YARIKGVAEYRMDDVVMEKLVEFDLLKH-AKKPS 1599
IGY P+ + LTV+E+L L YAR + + R++ V F LK K+ +
Sbjct: 75 AGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERV----YELFPRLKERRKQLA 130
Query: 1600 FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILT 1659
TLSGG ++ L++A A++ P +++LDEPS G+ P ++E I L R ++L
Sbjct: 131 GTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIREL--RDEGVTILLV 188
Query: 1660 THSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1691
+ A + R ++ G++ G+ L
Sbjct: 189 EQNARFALEIADRAYVLERGRVVLEGTAAELL 220
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 129 bits (328), Expect = 2e-33
Identities = 63/211 (29%), Positives = 111/211 (52%), Gaps = 14/211 (6%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDE---I 634
A+N L L + ++ ++G NGAGK+T + ++ G P G L G ++T + E
Sbjct: 17 ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTG-LPEHQIA 75
Query: 635 RKGLGVCPQYDILFPELTVREHLEM--------FAVL-KGVKEELLESVVAEMVDEVGLA 685
R G+G Q +F LTV E+LE+ FA L + E + + E+++ +GLA
Sbjct: 76 RAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRI-EEVLETIGLA 134
Query: 686 DKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRI 745
D+ + + LS G K+ L +G+ L+ D K+++LDEP +GM T +L+K +
Sbjct: 135 DEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHS 194
Query: 746 ILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
+++ H M+ + D++ ++ GS+ GS
Sbjct: 195 VVVVEHDMEFVRSIADKVTVLHQGSVLAEGS 225
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 3e-33
Identities = 68/244 (27%), Positives = 121/244 (49%), Gaps = 22/244 (9%)
Query: 556 DGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP 615
I++ L Y + + + L++ + +I AL+G NGAGKST + ++GL+ P
Sbjct: 1 MMPMIEVENLTVSYGNRP----VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP 56
Query: 616 TTGDALVFGKNITADMDEIRKGLGVCPQ---YDILFPELTVREHLEMFAVLKGVKEELLE 672
++G+ +FGK + +R +G PQ D FP +TV++ + + K L
Sbjct: 57 SSGEIKIFGKPVRKRRKRLR--IGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLN 113
Query: 673 SVVAEMVDE----VGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPY 728
E VDE VG+ D + + LSGG K+++ L AL + +++LDEP +G+D
Sbjct: 114 KKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVA 173
Query: 729 SMRLTWQLIKKIKK-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCG------SSLFLK 781
+ + L+K++++ G+ +L+ TH + DR+ I N L G + L+
Sbjct: 174 GQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRV-ICLNRHLIASGPPEEVLTEENLE 232
Query: 782 HQYG 785
+G
Sbjct: 233 KAFG 236
|
Length = 254 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 4e-33
Identities = 81/278 (29%), Positives = 125/278 (44%), Gaps = 21/278 (7%)
Query: 1469 NLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAF 1528
+L + +RS AV ++F + GE GFLG NGAGK+TTL M++G PT G
Sbjct: 25 SLNHFFHRKERSIE--AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR 82
Query: 1529 IFGKDIRSDPKAARRLIGYC-PQFDALLEYLTVQEHLELYARIKGV--AEYRMDDVVMEK 1585
+ GKD + R IG Q L L + LE+ I + E+ ++
Sbjct: 83 VNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAER---LDF 139
Query: 1586 LVE-FDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK----RFM 1640
L E DL K P LS G + + +A A++ P ++ LDEP+ G+D A+ F+
Sbjct: 140 LTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFL 199
Query: 1641 WEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1700
E + + V+LTTH ++ LC R+ ++ GQL G+ L+ +FG + E
Sbjct: 200 KEY-----NEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEF 254
Query: 1701 EV---KPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLD 1735
V + +S + L I + R D
Sbjct: 255 SVELKQAKSLSQLALLGDVTIEEGLNIKNDVSREESAD 292
|
Length = 325 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 127 bits (323), Expect = 5e-33
Identities = 65/219 (29%), Positives = 125/219 (57%), Gaps = 8/219 (3%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I+++ L K Y A+ + L++ + + +A++G +G+GKST +++L GL PT+G+
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 620 ALVFGKNIT----ADMDEIR-KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESV 674
V G +I+ ++ R + +G Q L P+LT E++E+ +L GV ++
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRER 120
Query: 675 VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTW 734
E+++ VGL D++N LSGG ++++++ AL D K+++ DEPT +D + +
Sbjct: 121 AEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVM 180
Query: 735 QLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSL 771
+L++++ K G I++ TH + A E DRI + +G +
Sbjct: 181 ELLRELNKEAGTTIVVVTHDPELA-EYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 5e-33
Identities = 67/220 (30%), Positives = 115/220 (52%), Gaps = 7/220 (3%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+++ L Y +R A++ + T+ + +ALLG NGAGKST S+L L G
Sbjct: 2 LEVAGLSFRYGARR----ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQ 57
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 679
V G ++ LGV Q L +L+VR++L A L G+ + +AE++
Sbjct: 58 ISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELL 117
Query: 680 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 739
+GLA++ + VR L+GG +R++ + AL+ +++LDEPT G+DP S ++
Sbjct: 118 ARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRA 177
Query: 740 I--KKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSS 777
+ +G +L TH +DE E DR+ ++ G + G++
Sbjct: 178 LARDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLADGAA 216
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 8e-33
Identities = 75/239 (31%), Positives = 125/239 (52%), Gaps = 13/239 (5%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
I L N+ K Y VA+ ++ ++ GE F LG +G GKTT L +I+G E PT
Sbjct: 1 IELENVSKFY------GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTS 54
Query: 1525 GTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVME 1584
G + GKDI + P +R + Q AL +LTV E++ R+K + + + + V E
Sbjct: 55 GEILLDGKDITNLP-PHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAE 113
Query: 1585 KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVI 1644
L L +A + LSGG ++++++A A++ +P +++LDEP +D ++ M +
Sbjct: 114 ALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLEL 173
Query: 1645 SRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL----KTRF-GNFL 1698
RL G T + TH EA + RI +M G+++ IG+P+ + RF +F+
Sbjct: 174 KRLQKELGIT-FVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPANRFVADFI 231
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 9e-33
Identities = 59/220 (26%), Positives = 129/220 (58%), Gaps = 9/220 (4%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I+++ + K+Y A+ + L + + +A++G +G+GKST +++L GL PT+G+
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 620 ALVFGKNITA----DMDEIRKG-LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESV 674
L+ GK++T ++ ++R+ +G Q L P+LTV E++E+ ++ G +
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA 121
Query: 675 VAEMVDEVGLADKVNIV-VRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLT 733
E+++ +GL D++ LSGG ++++++ ALI + K+++ DEPT +D + +
Sbjct: 122 AEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEV 181
Query: 734 WQLIKKI--KKGRIILLTTHSMDEAEELGDRIAIMANGSL 771
+L++++ ++G+ I++ TH + A + DR+ + +G +
Sbjct: 182 LELLRELNKERGKTIIMVTHDPELA-KYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 1e-32
Identities = 74/223 (33%), Positives = 123/223 (55%), Gaps = 16/223 (7%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP----- 614
I++R L+ Y G+ A+ + L + + +I AL+G +G GKST + +L L
Sbjct: 1 IELRDLNVYY----GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA 56
Query: 615 PTTGDALVFGKNITA---DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKE-EL 670
P G+ L+ GK+I D+ E+R+ +G+ Q FP ++ +++ L G+K E
Sbjct: 57 PDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFP-GSIYDNVAYGLRLHGIKLKEE 115
Query: 671 LESVVAEMVDEVGLADKVN--IVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPY 728
L+ V E + + L D+V + LSGG +++L L AL + +V++LDEPTS +DP
Sbjct: 116 LDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPI 175
Query: 729 SMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 771
S +LI ++KK I++ TH+M +A + DR A + NG L
Sbjct: 176 STAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRL 218
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 1e-32
Identities = 70/224 (31%), Positives = 118/224 (52%), Gaps = 28/224 (12%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+++ L Y G A+ + L + +I+ALLG NGAGK+T + ++GL+ P +G
Sbjct: 4 LEVENLSAGY----GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGR 59
Query: 620 ALVFGKNITA-DMDEI-RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAE 677
+ G++IT E R G+ P+ +FP LTV E+L + A + KE
Sbjct: 60 IIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEA-----QER 114
Query: 678 MVDEV-----GLADKVNIVVRA--LSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSM 730
++EV L ++ N RA LSGG ++ L++ AL+ K+++LDEP+ G+ P
Sbjct: 115 DLEEVYELFPRLKERRN--QRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAP--- 169
Query: 731 RLTWQL---IKKIKK--GRIILLTTHSMDEAEELGDRIAIMANG 769
++ ++ IK+++K G ILL + A E+ DR ++ NG
Sbjct: 170 KIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENG 213
|
Length = 237 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 2e-32
Identities = 65/262 (24%), Positives = 122/262 (46%), Gaps = 16/262 (6%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP---- 615
+++ L +AT G AV + + +IL ++G +G+GKST L+GL+P
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 616 TTGDALVFGKNIT----ADMDEIRKG-LGVCPQ--YDILFPELTVREHL-EMFAVLKGVK 667
T+G+ ++ G+++ +M ++R + + Q L P +T+ + + E +
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGS 125
Query: 668 EELLESVVAEMVDEVGLADKVNIVV--RALSGGMKRKLSLGIALIGDSKVVILDEPTSGM 725
E++++VGL D LSGGM++++ + +AL K++I DEPT+ +
Sbjct: 126 RAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTAL 185
Query: 726 DPYSMRLTWQLIKKI--KKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 783
D + L+K + + G +L TH + EL DR+ +M G + G + +
Sbjct: 186 DVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSN 245
Query: 784 YGVGYTLTLVKSAPDASAAADI 805
YT L+ + P I
Sbjct: 246 PQHPYTRGLLAAVPRLGDEKII 267
|
Length = 539 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 3e-32
Identities = 70/213 (32%), Positives = 111/213 (52%), Gaps = 23/213 (10%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA----DMDE 633
VN + L + E +I ++G +G+GKST + + LI PT+G L+ G++I A ++ E
Sbjct: 39 GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRE 98
Query: 634 IR-KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVV 692
+R K + + Q L P TV E++ ++GV E AE ++ VGL +
Sbjct: 99 LRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP 158
Query: 693 RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK----------IKK 742
LSGGM++++ L AL D ++++DE S +DP LI++ +
Sbjct: 159 DELSGGMQQRVGLARALAVDPDILLMDEAFSALDP--------LIRREMQDELLRLQAEL 210
Query: 743 GRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 775
+ I+ TH +DEA LGDRIAIM +G L G
Sbjct: 211 QKTIVFITHDLDEALRLGDRIAIMKDGRLVQVG 243
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 3e-32
Identities = 64/207 (30%), Positives = 116/207 (56%), Gaps = 13/207 (6%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP---TTGDALVFGKNITADMDEIR 635
+N + L + Q++A+LG +G+GK+T + + G + T+G L G+ D + +
Sbjct: 23 LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPD--QFQ 80
Query: 636 KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGL---ADKV--NI 690
K + Q DIL P LTVRE L A+L+ + +++ + V++V L A
Sbjct: 81 KCVAYVRQDDILLPGLTVRETLTYTAILRL-PRKSSDAIRKKRVEDVLLRDLALTRIGGN 139
Query: 691 VVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-KKGRIILLT 749
+V+ +SGG +R++S+ + L+ D KV+ILDEPTSG+D ++ + ++ ++ RI++LT
Sbjct: 140 LVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILT 199
Query: 750 THS-MDEAEELGDRIAIMANGSLKCCG 775
H + L DRI ++++G + G
Sbjct: 200 IHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 3e-32
Identities = 68/216 (31%), Positives = 108/216 (50%), Gaps = 17/216 (7%)
Query: 571 TKR-GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA 629
+KR G AVN + L + +I+ L+G NGAGK+T +++ G P++G + G++IT
Sbjct: 11 SKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITG 70
Query: 630 -DMDEI-RKGLGVCPQYDILFPELTVREHL-------EMFAVLKGVKEELLESVVA---- 676
I R G+ Q LFP LTV E++ + L G E A
Sbjct: 71 LPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERA 130
Query: 677 -EMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ 735
E+++ VGL + + LS G +R+L + AL K+++LDEP +G++P +
Sbjct: 131 RELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAE 190
Query: 736 LIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANG 769
LI++++ G ILL H M L DRI ++ G
Sbjct: 191 LIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYG 226
|
Length = 250 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 4e-32
Identities = 70/223 (31%), Positives = 117/223 (52%), Gaps = 12/223 (5%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
+ L N+ K + A+ L + GE LG +G GKTTTL MI+G E PT
Sbjct: 1 VELENVTKRFGN------VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTS 54
Query: 1525 GTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVME 1584
G +I G+D+ +D R I Q AL ++TV +++ +++ V + +D+ V E
Sbjct: 55 GRIYIGGRDV-TDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVRE 113
Query: 1585 --KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1642
+L++ + L +KP LSGG ++++++ A++ +P + ++DEP + +D + M
Sbjct: 114 VAELLQIEHLLD-RKPK-QLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRA 171
Query: 1643 VISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1685
+ RL R G T I TH EA + RI +M GQ++ IG
Sbjct: 172 ELKRLQQRLGTT-TIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 4e-32
Identities = 65/220 (29%), Positives = 105/220 (47%), Gaps = 42/220 (19%)
Query: 1467 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1526
+ NL Y G + + L+ S++AGE G LG NGAGK+T L ++G P+ G
Sbjct: 2 VENLSVGYGG------RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGE 55
Query: 1527 AFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEK 1585
+ GKD+ S PK R I Y PQ +E
Sbjct: 56 ILLDGKDLASLSPKELARKIAYVPQ-------------------------------ALEL 84
Query: 1586 LVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVIS 1645
L L A +P LSGG ++++ +A A+ +PPI++LDEP++ +D + + E++
Sbjct: 85 L---GLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLR 141
Query: 1646 RLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1685
RL+ +GKT V++ H +N A R+ ++ G++ G
Sbjct: 142 RLARERGKT-VVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 5e-32
Identities = 77/262 (29%), Positives = 126/262 (48%), Gaps = 24/262 (9%)
Query: 1461 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE 1520
+ +RN+ K + AV ++ ++ GE LG +G GKTT L MI+G E
Sbjct: 2 PKPALEIRNVSKSF------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE 55
Query: 1521 YPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHL--ELYARIKGVAEYRM 1578
P+ G + G+DI P +R IG Q AL ++TV+E++ L R K + + +
Sbjct: 56 QPSSGEILLDGEDITDVP-PEKRPIGMVFQSYALFPHMTVEENVAFGLKVR-KKLKKAEI 113
Query: 1579 DDVVMEKLVEFDLLKHAK-KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK 1637
V E L L A KP LSGG ++++++A A++ +P +++LDEP + +D +
Sbjct: 114 KARVEEALELVGLEGFADRKPH-QLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLR 172
Query: 1638 RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ----HLKTR 1693
M + + L G T + TH EA A+ RI +M G++ +G+P+ TR
Sbjct: 173 EQMRKELKELQRELGITF-VYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATR 231
Query: 1694 FG-------NFLELEVKPTEVS 1708
F N E +V +
Sbjct: 232 FVADFIGESNIFEGKVVERLGA 253
|
Length = 352 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 7e-32
Identities = 71/215 (33%), Positives = 125/215 (58%), Gaps = 14/215 (6%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
++ + L K + G AVN++ LT+ +N + LLG NGAGKST + M+ G++ PT+G+
Sbjct: 1 LETKNLSKRF----GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGE 56
Query: 620 ALVFGKNIT-ADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEM 678
+ G T D+ +I G + L+ LT RE+L++ L G+ + S + E+
Sbjct: 57 IIFDGHPWTRKDLHKI----GSLIESPPLYENLTARENLKVHTTLLGLPD----SRIDEV 108
Query: 679 VDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIK 738
++ V L + + S GMK++L + IAL+ K++ILDEPT+G+DP ++ +LI+
Sbjct: 109 LNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIR 168
Query: 739 KI-KKGRIILLTTHSMDEAEELGDRIAIMANGSLK 772
++G ++L++H + E ++L D I I++ G L
Sbjct: 169 SFPEQGITVILSSHILSEVQQLADHIGIISEGVLG 203
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 1e-31
Identities = 71/241 (29%), Positives = 115/241 (47%), Gaps = 21/241 (8%)
Query: 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1522
++ +R L K + GG AV+ ++ V+ GE G +G NGAGKTT ++I+G P
Sbjct: 3 PLLEVRGLSKRF-GGL-----TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP 56
Query: 1523 TDGTAFIFGKDIRSDP--KAARRLIGYCPQFDALLEYLTVQEHLELYARIKGV------- 1573
+ GT G+DI P + AR I Q L LTV E++ + A +
Sbjct: 57 SSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGR 116
Query: 1574 -----AEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEP 1628
E + E L L + A +P+ LS G +R+L +A A+ P +++LDEP
Sbjct: 117 PRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEP 176
Query: 1629 STGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1688
+ G++P + E+I L +G ++L H M L RI ++ G++ G+P+
Sbjct: 177 AAGLNPEETEELAELIRELR-DRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPE 235
Query: 1689 H 1689
Sbjct: 236 E 236
|
Length = 250 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 2e-31
Identities = 70/218 (32%), Positives = 111/218 (50%), Gaps = 14/218 (6%)
Query: 1484 VAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDP--KAA 1541
VA+ ++FSV+ GE G +G NGAGKTT ++ISG PT G+ G+DI P + A
Sbjct: 14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIA 73
Query: 1542 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDV----------VMEKLVEFDL 1591
R IG Q L LTV E++ + A+ + + + E L L
Sbjct: 74 RLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL 133
Query: 1592 LKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQ 1651
A +P+ LS G +R+L +A A+ DP +++LDEP+ G++P + E+I L R+
Sbjct: 134 ADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIREL--RE 191
Query: 1652 GKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1689
V+L H M+ +L R+ ++ G++ G+P
Sbjct: 192 RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDE 229
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 2e-31
Identities = 67/221 (30%), Positives = 113/221 (51%), Gaps = 13/221 (5%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+ +R L VY + A+N++ L + + L ++G +G+GKST +L GL P++G
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 620 ALVFGKNITAD--MDEIRKGLGVCPQ--YDILFPELTVREHLEMFAVLKGVKEELLESVV 675
L+ GK + + + + Q Y L P TV L G+ + + +
Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKS--QQRI 121
Query: 676 AEMVDEVGLADKVNIVVR---ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRL 732
AE++D+VGL + R LSGG ++++++ ALI + K++ILDEPTS +D
Sbjct: 122 AELLDQVGLPPSF--LDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQ 179
Query: 733 TWQLIKKIKKGR--IILLTTHSMDEAEELGDRIAIMANGSL 771
L+ ++KK R L +H + E + DRIA+M NG +
Sbjct: 180 ILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQI 220
|
Length = 252 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 3e-31
Identities = 68/219 (31%), Positives = 119/219 (54%), Gaps = 13/219 (5%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+ L K Y + VN + L + +I+ LLG NGAGK+TT M+VGL+ P +G
Sbjct: 5 LVAENLAKSYKKR----KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGK 60
Query: 620 ALVFGKNITAD-MDE-IRKGLGVCPQYDILFPELTVREH----LEMFAVLKGVKEELLES 673
L+ ++IT M + R G+G PQ +F +LTV ++ LE+ E E
Sbjct: 61 ILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEE- 119
Query: 674 VVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLT 733
+ +++E + + +LSGG +R++ + AL + K ++LDEP +G+DP ++
Sbjct: 120 -LDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDI 178
Query: 734 WQLIKKIKKGRI-ILLTTHSMDEAEELGDRIAIMANGSL 771
++IK +K I +L+T H++ E ++ DR I+++G +
Sbjct: 179 QRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKV 217
|
Length = 243 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 3e-31
Identities = 66/219 (30%), Positives = 127/219 (57%), Gaps = 7/219 (3%)
Query: 560 IQIRKLHKVYATKRGNCC-AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTG 618
I++ + K + A++ + L + + +I ++G++GAGKST + ++ L PT+G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 619 DALVFGKNITA----DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESV 674
V G+++TA ++ ++R+ +G+ Q+ L TV E++ L GV + ++
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQR 121
Query: 675 VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTW 734
VAE+++ VGL+DK + LSGG K+++++ AL + K+++ DE TS +DP + +
Sbjct: 122 VAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSIL 181
Query: 735 QLIKKI--KKGRIILLTTHSMDEAEELGDRIAIMANGSL 771
+L+K I + G I+L TH M+ + + DR+A++ G L
Sbjct: 182 ELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRL 220
|
Length = 339 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 126 bits (317), Expect = 6e-31
Identities = 71/274 (25%), Positives = 132/274 (48%), Gaps = 13/274 (4%)
Query: 1478 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD 1537
K++ K V+ ++ GE F +G +G+GK+TT+ M++ PT G FI G++I
Sbjct: 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQ 60
Query: 1538 PKA-----ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL 1592
R+ IG Q AL ++T+ ++ L + G E + +E L L
Sbjct: 61 SPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLE 120
Query: 1593 KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1652
++ + LSGG ++++ +A A+ +P I+++DE + +DP+ + M + + +L
Sbjct: 121 EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQ 180
Query: 1653 KTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH-LKTRFGNFLELEVKPTEVSSV- 1710
KT ++ TH ++EA + RI IM G++ +G+P L+ ++E + ++S V
Sbjct: 181 KT-IVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEFIGKVDLSQVF 239
Query: 1711 DLEDLCQIIQERVFDI-----PSQRRSLLDDLEV 1739
D E + Q + P L+ D V
Sbjct: 240 DAERIAQRMNTGPITKTADKGPRSALQLMRDERV 273
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 7e-31
Identities = 60/214 (28%), Positives = 115/214 (53%), Gaps = 2/214 (0%)
Query: 1482 AKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAA 1541
A+ A+ ++F+V+ G LG NGAGK+T S+++ +G + G D+R P+AA
Sbjct: 13 ARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA 72
Query: 1542 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFT 1601
+G Q L L+V+++L +A + G++ + E L L + A
Sbjct: 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLARLGLAERADDKVRE 132
Query: 1602 LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1661
L+GG++R++ +A A++ P +++LDEP+ G+DP ++ + + L+ QG +V+ TH
Sbjct: 133 LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQG-LSVLWATH 191
Query: 1662 SMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 1695
++E +A R+ ++ G++ G+ L+ G
Sbjct: 192 LVDEIEA-DDRLVVLHRGRVLADGAAAELRGATG 224
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 7e-31
Identities = 67/222 (30%), Positives = 115/222 (51%), Gaps = 24/222 (10%)
Query: 561 QIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDA 620
++ L+ Y G + + L + + ++ +LG NG GK+T + L+GL+P +G
Sbjct: 2 EVSNLNVYY----GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSI 57
Query: 621 LVFGKNITAD--MDEIRKGLGVCPQYDILFPELTVREHLEM-FAVLKG----VKEELLE- 672
+ G++IT + R G+ PQ +FP LTV E+L A L + +E+ E
Sbjct: 58 RLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYEL 117
Query: 673 -SVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMR 731
V+ EM+ G D LSGG +++L++ AL+ K+++LDEPT G+ P ++
Sbjct: 118 FPVLKEMLGRRG-GD--------LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIK 168
Query: 732 LTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSL 771
++I++++ G ILL +D A EL DR +M G +
Sbjct: 169 DIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRV 210
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 1e-30
Identities = 68/218 (31%), Positives = 114/218 (52%), Gaps = 6/218 (2%)
Query: 1478 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD 1537
K++ V V+ ++ V+ GE F +G +G+GK+T L I+ PT G I G+DI +
Sbjct: 32 KKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAM 91
Query: 1538 PKAA-----RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL 1592
+ R+ I Q ALL + TV E++ ++GV ++ E L L
Sbjct: 92 SRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLE 151
Query: 1593 KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1652
K LSGG ++++ +A A+ DP I+++DE + +DP+ +R M + + RL
Sbjct: 152 GWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQ 211
Query: 1653 KTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
KT ++ TH ++EA L RI IM G+L +G+P+ +
Sbjct: 212 KT-IVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEI 248
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 1e-30
Identities = 79/216 (36%), Positives = 122/216 (56%), Gaps = 17/216 (7%)
Query: 1468 RNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTA 1527
+NL K + GK++ AV++++ +V +G LG NGAGK+T L MI+G PT G
Sbjct: 4 KNLSKRF--GKQT----AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEI 57
Query: 1528 FIFGKD-IRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKL 1586
G R D IG + L E LT +E+L+++ + G+ + R+D+V+ +
Sbjct: 58 IFDGHPWTRKDLHK----IGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVL--NI 111
Query: 1587 VEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISR 1646
V DL KK + S G K++L +AIA++ P ++ILDEP+ G+DPI + + E+I R
Sbjct: 112 V--DLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELI-R 168
Query: 1647 LSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLR 1682
QG T VIL++H ++E Q L IGI+ G L
Sbjct: 169 SFPEQGIT-VILSSHILSEVQQLADHIGIISEGVLG 203
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 1e-30
Identities = 64/216 (29%), Positives = 107/216 (49%), Gaps = 11/216 (5%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEI--- 634
A+N L ++ ++ L+G NGAGK+T + ++ G P G+ L G + E
Sbjct: 20 ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIA 79
Query: 635 RKGLGVCPQYDILFPELTVREHLEM--------FAVLKGVKEELLESVVAEMVDEVGLAD 686
R G+G Q +F LTVRE+LE+ FA L + E++ +GL D
Sbjct: 80 RAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGD 139
Query: 687 KVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRII 746
+ + + LS G K+ L +G+ L D K+++LDEP +GM T +L+K + I
Sbjct: 140 ERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSI 199
Query: 747 LLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782
L+ H M E+ D++ ++ GS+ GS +++
Sbjct: 200 LVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQN 235
|
Length = 249 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 2e-30
Identities = 70/224 (31%), Positives = 122/224 (54%), Gaps = 11/224 (4%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1523
+I L+N+ KV+ A+ ++ SV GE FG +G +GAGK+T + I+G E PT
Sbjct: 1 MIELKNVSKVFGDTGGK--VTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT 58
Query: 1524 DGTAFIFGKDI----RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMD 1579
G+ + G D+ + + ARR IG Q LL TV E++ L I GV + ++
Sbjct: 59 SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIE 118
Query: 1580 DVVMEKLVEFDLL--KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK 1637
+ V+E L+E L K P+ LSGG K+++ +A A+ +P +++ DE ++ +DP
Sbjct: 119 ERVLE-LLELVGLEDKADAYPA-QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETT 176
Query: 1638 RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
+ + ++ ++ G T ++L TH M + +C R+ +M G++
Sbjct: 177 QSILALLRDINRELGLT-IVLITHEMEVVKRICDRVAVMEKGEV 219
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 3e-30
Identities = 66/208 (31%), Positives = 108/208 (51%), Gaps = 9/208 (4%)
Query: 572 KRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADM 631
K G VN L + + +I ++G +G+GKSTT+ ML LI PT G + G+NI
Sbjct: 2 KTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIM-KQ 60
Query: 632 DEI------RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA 685
+ RK +G+ Q LFP +T+ ++ + L G E+ + E++ VGL
Sbjct: 61 SPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLE 120
Query: 686 DKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--G 743
+ + LSGGM++++ L AL + ++++DE S +DP +KK++
Sbjct: 121 EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQ 180
Query: 744 RIILLTTHSMDEAEELGDRIAIMANGSL 771
+ I+ TH +DEA +GDRI IM G +
Sbjct: 181 KTIVFITHDLDEAIRIGDRIVIMKAGEI 208
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 126 bits (320), Expect = 3e-30
Identities = 62/222 (27%), Positives = 115/222 (51%), Gaps = 17/222 (7%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+++R + K + + A++ + LT+ ++ ALLG NGAGKST + +L G+ PP +G+
Sbjct: 9 LELRGISKSFGGVK----ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGE 64
Query: 620 ALVFGKNITAD--MDEIRKGLGVCPQYDILFPELTVREHL----EMFAVLKGVKEELLES 673
L+ GK + D + G+ Q L P L+V E++ E + + +
Sbjct: 65 ILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRR 124
Query: 674 VVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLT 733
E++ +GL + +V LS ++ + + AL D++V+ILDEPT+ + + T
Sbjct: 125 RARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTV---KET 181
Query: 734 WQLIKKIK----KGRIILLTTHSMDEAEELGDRIAIMANGSL 771
+L I+ +G I+ +H +DE E+ DRI ++ +G +
Sbjct: 182 ERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRV 223
|
Length = 500 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 4e-30
Identities = 68/235 (28%), Positives = 112/235 (47%), Gaps = 19/235 (8%)
Query: 1461 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE 1520
+I + NL Y + + ++ SV+ GE +G NGAGK+T L I G
Sbjct: 1 MMPMIEVENLTVSY------GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLL 54
Query: 1521 YPTDGTAFIFGKDIRSDPKAARRLIGYCPQ---FDALLEYLTVQEHLEL--YARIKGVAE 1575
P+ G IFGK +R + R IGY PQ D +TV++ + L Y +
Sbjct: 55 KPSSGEIKIFGKPVR--KRRKRLRIGYVPQKSSVDRSF-PITVKDVVLLGRYGKKGWFRR 111
Query: 1576 YRMDD--VVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMD 1633
D V E L + + LSGG K+++ +A A+ +P +++LDEP TG+D
Sbjct: 112 LNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVD 171
Query: 1634 PIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1688
++ +++++ L ++GKT V++ TH + A R+ I + L G P+
Sbjct: 172 VAGQKEIYDLLKELR-QEGKT-VLMVTHDLGLVMAYFDRV-ICLNRHLIASGPPE 223
|
Length = 254 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 119 bits (302), Expect = 5e-30
Identities = 67/211 (31%), Positives = 104/211 (49%), Gaps = 9/211 (4%)
Query: 1485 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDP--KAAR 1542
A+ ++ V+ GE LG NGAGKTT L I G P G G+DI P + AR
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERAR 77
Query: 1543 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVE-FDLLKH-AKKPSF 1600
I Y P+ + LTV+E+L L A + + +E++ E F LK + +
Sbjct: 78 LGIAYVPEGRRIFPRLTVEENLLLGA--YARRDKEAQERDLEEVYELFPRLKERRNQRAG 135
Query: 1601 TLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP-IAKRFMWEVISRLSTRQGKTAVILT 1659
TLSGG ++ L++A A++ P +++LDEPS G+ P I + E I L G T ++L
Sbjct: 136 TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIF-EAIKELRKEGGMT-ILLV 193
Query: 1660 THSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
+ A + R ++ G++ G+ L
Sbjct: 194 EQNARFALEIADRGYVLENGRIVLSGTAAEL 224
|
Length = 237 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 8e-30
Identities = 76/216 (35%), Positives = 116/216 (53%), Gaps = 13/216 (6%)
Query: 571 TKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT-- 628
K G VN L + E +I ++G +G+GKST + +L LI PT G+ LV GK+I
Sbjct: 36 KKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKL 95
Query: 629 --ADMDEIR-KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA 685
A++ E+R K + + Q L P TV E++ ++GV + E E ++ VGL
Sbjct: 96 SAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLE 155
Query: 686 DKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ-----LIKKI 740
+ LSGGM++++ L AL D ++++DE S +DP +R Q L K+
Sbjct: 156 GYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPL-IRTEMQDELLELQAKL 214
Query: 741 KKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
KK I+ TH +DEA +GDRIAIM +G + G+
Sbjct: 215 KK--TIVFITHDLDEALRIGDRIAIMKDGEIVQVGT 248
|
Length = 386 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 8e-30
Identities = 59/229 (25%), Positives = 120/229 (52%), Gaps = 19/229 (8%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP---- 615
++++ L + T G AV+ + L + +IL ++G +G+GKS ++GL+P
Sbjct: 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNAR 61
Query: 616 -TTGDALVFGKNITA----DMDEIR-KGLGVCPQY--DILFPELTVREHLE--MFAVLKG 665
G+ L GK++ + ++ +IR K + + Q L P +T+ + + + KG
Sbjct: 62 IVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKG 121
Query: 666 VKEELLESVVAEMVDEVGLADKVNIVVR---ALSGGMKRKLSLGIALIGDSKVVILDEPT 722
+ ++ + E+++ VG+ D + LSGGM++++ + +AL + K++I DEPT
Sbjct: 122 LSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPT 181
Query: 723 SGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANG 769
+ +D L+K++++ G ++L TH + E+ DR+A+M G
Sbjct: 182 TALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAG 230
|
Length = 316 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 9e-30
Identities = 62/244 (25%), Positives = 112/244 (45%), Gaps = 24/244 (9%)
Query: 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1522
+I ++NL K YPGG + A+ + + GE +G +GAGK+T L ++G P
Sbjct: 2 MMIEVKNLSKTYPGGHQ-----ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDP 56
Query: 1523 TDGTAFIFGKDIRSDPKAA----RRLIGYCPQFDALLEYLTVQEHLELYAR-----IKGV 1573
T G G I RR IG Q L+ L+V E++ L + +
Sbjct: 57 TSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSL 116
Query: 1574 ------AEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDE 1627
+ ++ L +L A + + TLSGG ++++++A A++ P I++ DE
Sbjct: 117 FGLFSKEDKAQ---ALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADE 173
Query: 1628 PSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1687
P +DP + + + +++ ++ G T VI+ H ++ A+ RI + G++ G
Sbjct: 174 PVASLDPESAKKVMDILKDINQEDGIT-VIVNLHQVDLAKKYADRIIGLKAGRIVFDGPA 232
Query: 1688 QHLK 1691
L
Sbjct: 233 SELT 236
|
Length = 258 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 9e-30
Identities = 67/217 (30%), Positives = 127/217 (58%), Gaps = 13/217 (5%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I+I+ LHK + + + LT+ + +++ ++G +G+GKST + + L P +G
Sbjct: 1 IEIKNLHKSFGDFH----VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGT 56
Query: 620 ALVFGKNITA---DMDEIRKGLG-VCPQYDILFPELTVREHLEMFA--VLKGVKEELLES 673
++ G +T +++E+R+ +G V Q++ LFP LTV E++ A +KG+ + E
Sbjct: 57 IIIDGLKLTDDKKNINELRQKVGMVFQQFN-LFPHLTVLENI-TLAPIKVKGMSKAEAEE 114
Query: 674 VVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLT 733
E++++VGLADK + LSGG ++++++ AL + KV++ DEPTS +DP +
Sbjct: 115 RALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEV 174
Query: 734 WQLIKKI-KKGRIILLTTHSMDEAEELGDRIAIMANG 769
++K + ++G +++ TH M A E+ DR+ M +G
Sbjct: 175 LDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDG 211
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 1e-29
Identities = 67/223 (30%), Positives = 124/223 (55%), Gaps = 10/223 (4%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I+I+ L K + G+ + + L++ + +++ ++G +G+GKST + L GL P +G
Sbjct: 3 IEIKNLSKSF----GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGS 58
Query: 620 ALVFGKNITA--DMDEIRKGLGVCPQYDILFPELTVREHLEMFA--VLKGVKEELLESVV 675
V G+++ D+ ++R+ +G+ Q LFP LTV E++ A +K + +
Sbjct: 59 ITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENV-TLAPVKVKKLSKAEAREKA 117
Query: 676 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ 735
E++++VGLADK + LSGG ++++++ AL D KV++ DEPTS +DP +
Sbjct: 118 LELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLD 177
Query: 736 LIKKIKK-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSS 777
++K + + G +++ TH M A E+ DR+ M G + G
Sbjct: 178 VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPP 220
|
Length = 240 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 2e-29
Identities = 60/215 (27%), Positives = 121/215 (56%), Gaps = 13/215 (6%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+++ + K + GN A++ L L + + + + LLG +G GK+TT+ M+ GL PT+G
Sbjct: 1 VELENVTKRF----GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGR 56
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 679
+ G+++T D+ + + + Q L+P +TV +++ L+ V ++ ++ V E+
Sbjct: 57 IYIGGRDVT-DLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVA 115
Query: 680 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP---YSMRLTWQL 736
+ + + ++ + LSGG +++++LG A++ + KV ++DEP S +D MR
Sbjct: 116 ELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAE--- 172
Query: 737 IKKIKK--GRIILLTTHSMDEAEELGDRIAIMANG 769
+K++++ G + TH EA + DRIA+M +G
Sbjct: 173 LKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDG 207
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 2e-29
Identities = 66/211 (31%), Positives = 113/211 (53%), Gaps = 10/211 (4%)
Query: 565 LHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFG 624
+ + + + ++ L L LY +I+AL G NGAGK+T +L GLI ++G L+ G
Sbjct: 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG 61
Query: 625 KNITADMDEIRKGLGVCPQ--YDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEV 682
K I A E RK +G Q LF + +VRE L + E E+V+ ++
Sbjct: 62 KPIKAK--ERRKSIGYVMQDVDYQLFTD-SVREELLLGLKELDAGNEQAETVLKDL---- 114
Query: 683 GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK 742
L +LSGG K++L++ AL+ ++I DEPTSG+D +M +LI+++
Sbjct: 115 DLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA 174
Query: 743 -GRIILLTTHSMDEAEELGDRIAIMANGSLK 772
G+ +++ TH + ++ DR+ ++ANG++
Sbjct: 175 QGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 3e-29
Identities = 70/220 (31%), Positives = 122/220 (55%), Gaps = 9/220 (4%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I++ + K Y G A++ + L + E + LLG +G GK+T + ++ G PT+G+
Sbjct: 1 IELENVSKFY----GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGE 56
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 679
L+ GK+IT ++ ++ + Q LFP LTV E++ LK + + ++ VAE +
Sbjct: 57 ILLDGKDIT-NLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEAL 115
Query: 680 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQL-IK 738
D V L N LSGG ++++++ AL+ + KV++LDEP +D +R QL +K
Sbjct: 116 DLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALD-LKLRKDMQLELK 174
Query: 739 KIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
+++K G + TH +EA + DRIA+M G ++ G+
Sbjct: 175 RLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGT 214
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 4e-29
Identities = 62/237 (26%), Positives = 113/237 (47%), Gaps = 21/237 (8%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG-----E 1519
I LR+L VY G K A+ ++ + GE +G +G GK+T L +++
Sbjct: 1 IELRDLN-VYYGDKH-----ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIP 54
Query: 1520 EYPTDGTAFIFGKDIRS---DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEY 1576
P +G + GKDI D RR +G Q ++ +++ R+ G+
Sbjct: 55 GAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFP-GSIYDNVAYGLRLHGIKLK 113
Query: 1577 R-MDDVVMEKLVEFDLLKHAKKPS--FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMD 1633
+D+ V E L + L K LSGG +++L +A A+ +P +++LDEP++ +D
Sbjct: 114 EELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALD 173
Query: 1634 PIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
PI+ + E+I+ L +++ TH+M +A + R ++ G+L G + +
Sbjct: 174 PISTAKIEELIAELKKE---YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 4e-29
Identities = 71/230 (30%), Positives = 117/230 (50%), Gaps = 29/230 (12%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
I RN+ YP A+ +++ +++AGE +G G+GK+T L +++G PT
Sbjct: 3 IEFRNVSFSYPN----QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTS 58
Query: 1525 GTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVM 1583
G+ + G DIR DP RR IGY PQ D L Y T+++++ L A + DD +
Sbjct: 59 GSVLLDGTDIRQLDPADLRRNIGYVPQ-DVTLFYGTLRDNITLGAPL-------ADDERI 110
Query: 1584 EKLVEF----DLL-KHAK-------KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTG 1631
+ E D + KH + LSGG ++ +++A A++ DPPI++LDEP++
Sbjct: 111 LRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSA 170
Query: 1632 MDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
MD ++ + RL G +I+ TH + L RI +M G++
Sbjct: 171 MDMNSEE---RLKERLRQLLGDKTLIIITHRPS-LLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 9e-29
Identities = 50/208 (24%), Positives = 99/208 (47%), Gaps = 39/208 (18%)
Query: 572 KRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADM 631
G ++ L L++ +I+ +LG NGAGKST + L GL+ P++G+ L+ GK++ A +
Sbjct: 8 GYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDL-ASL 66
Query: 632 D--EIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVN 689
E+ + + PQ ++ +GLA +
Sbjct: 67 SPKELARKIAYVPQ----------------------------------ALELLGLAHLAD 92
Query: 690 IVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIIL 747
LSGG ++++ L AL + +++LDEPTS +D +L++++ + G+ ++
Sbjct: 93 RPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVV 152
Query: 748 LTTHSMDEAEELGDRIAIMANGSLKCCG 775
+ H ++ A DR+ ++ +G + G
Sbjct: 153 MVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 9e-29
Identities = 59/232 (25%), Positives = 110/232 (47%), Gaps = 20/232 (8%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQ-----------------LTLYENQILALLGHNGAGK 602
I++ L K Y + SL+ T+ + +I+ +G NGAGK
Sbjct: 1 IEVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGK 60
Query: 603 STTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG-VCPQYDILFPELTVREHLEMFA 661
+TT+ +L GL+ PT+G+ V G + + +G V Q L+ +L V + + A
Sbjct: 61 TTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLA 120
Query: 662 VLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEP 721
+ + + + E+ + + L + ++ VR LS G + + + AL+ + +++ LDEP
Sbjct: 121 AIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEP 180
Query: 722 TSGMDPYSMRLTWQLIKKIKKGR--IILLTTHSMDEAEELGDRIAIMANGSL 771
T G+D + +K+ + R +LLT+H M + E L R+ ++ G L
Sbjct: 181 TIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRL 232
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 1e-28
Identities = 69/222 (31%), Positives = 130/222 (58%), Gaps = 12/222 (5%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
++IR + K + G+ AV+ + L + + + + LLG +G GK+T + M+ G P++G+
Sbjct: 6 LEIRNVSKSF----GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGE 61
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFA--VLKGVKEELLESVVAE 677
L+ G++IT D+ ++ +G+ Q LFP +TV E++ F V K +K+ +++ V E
Sbjct: 62 ILLDGEDIT-DVPPEKRPIGMVFQSYALFPHMTVEENVA-FGLKVRKKLKKAEIKARVEE 119
Query: 678 MVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQL- 736
++ VGL + LSGG +++++L AL+ + KV++LDEP S +D +R +
Sbjct: 120 ALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALD-AKLREQMRKE 178
Query: 737 IKKI--KKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
+K++ + G + TH +EA + DRIA+M +G ++ G+
Sbjct: 179 LKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGT 220
|
Length = 352 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 1e-28
Identities = 61/204 (29%), Positives = 110/204 (53%), Gaps = 21/204 (10%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 637
+ + + + LA++G NGAGKST + ++GL+ PT+G VFGK + + RK
Sbjct: 14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKE----RKR 69
Query: 638 LGVCPQ---YDILFPELTVRE--------HLEMFAVLKGVKEELLESVVAEMVDEVGLAD 686
+G PQ D FP ++VR+ H +F L + V E ++ VGL++
Sbjct: 70 IGYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRLSKADKAK----VDEALERVGLSE 124
Query: 687 KVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRI 745
+ + LSGG ++++ L AL+ D +++LDEP +G+DP + ++L+++++ +G
Sbjct: 125 LADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMT 184
Query: 746 ILLTTHSMDEAEELGDRIAIMANG 769
IL+ TH + E DR+ ++
Sbjct: 185 ILVVTHDLGLVLEYFDRVLLLNRT 208
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 1e-28
Identities = 51/193 (26%), Positives = 96/193 (49%), Gaps = 40/193 (20%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEIRK 636
+ + LT+ + +A++G +G+GKST + +L+ L PT+G+ L+ G ++ D++ +RK
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRK 76
Query: 637 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALS 696
+ PQ LF T+RE NI LS
Sbjct: 77 NIAYVPQDPFLFSG-TIRE---------------------------------NI----LS 98
Query: 697 GGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEA 756
GG ++++++ AL+ D ++ILDE TS +DP + L + ++ + KG+ +++ H +
Sbjct: 99 GGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTI 158
Query: 757 EELGDRIAIMANG 769
DRI ++ +G
Sbjct: 159 -RDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 2e-28
Identities = 57/182 (31%), Positives = 93/182 (51%), Gaps = 15/182 (8%)
Query: 1489 LTFSVQAGECFGFLGTNGAGKTTTLSMISG---EEYPTDGTAFIFGKDIRSDPKAARRLI 1545
++ V++G+ LG++G+GKTT L ISG T G G+ P ++ +
Sbjct: 26 VSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQP--RKPDQFQKCV 83
Query: 1546 GYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKH-----AKKPSF 1600
Y Q D LL LTV+E L A ++ + D + +K VE LL+
Sbjct: 84 AYVRQDDILLPGLTVRETLTYTAILRL--PRKSSDAIRKKRVEDVLLRDLALTRIGGNLV 141
Query: 1601 T-LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILT 1659
+SGG +R++S+A+ ++ DP ++ILDEP++G+D + +S+L+ R VILT
Sbjct: 142 KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARR--NRIVILT 199
Query: 1660 TH 1661
H
Sbjct: 200 IH 201
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 2e-28
Identities = 73/236 (30%), Positives = 115/236 (48%), Gaps = 23/236 (9%)
Query: 1465 IYLRNLRKVY------PGGKRS---------DAKVAVHSLTFSVQAGECFGFLGTNGAGK 1509
I + NL K Y PG S A+ ++F+++ GE GF+G NGAGK
Sbjct: 1 IEVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGK 60
Query: 1510 TTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYC-PQFDALLEYLTVQEHLELYA 1568
TTTL ++SG PT G + G K R IG Q L L V + L A
Sbjct: 61 TTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLA 120
Query: 1569 RIKGV--AEYRMDDVVMEKLVE-FDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVIL 1625
I + A ++ +++L E DL + P LS G + + +A A++ +P I+ L
Sbjct: 121 AIYDLPPARFKKR---LDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFL 177
Query: 1626 DEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
DEP+ G+D +A+ + + + R+ T V+LT+H M + +AL R+ ++ G+L
Sbjct: 178 DEPTIGLDVVAQENIRNFLKEYN-RERGTTVLLTSHYMKDIEALARRVLVIDKGRL 232
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 2e-28
Identities = 55/217 (25%), Positives = 104/217 (47%), Gaps = 36/217 (16%)
Query: 1468 RNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG--EEYPTDG 1525
RNL K + +++ + GE +G +GAGK+T L+ ++G G
Sbjct: 7 RNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSG 66
Query: 1526 TAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEK 1585
I G+ D ++ R++IGY PQ D L LTV+E L A+++G
Sbjct: 67 EVLINGRP--LDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRG------------- 111
Query: 1586 LVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVIS 1645
LSGG ++++S+A+ ++ +P ++ LDEP++G+D + + ++
Sbjct: 112 ----------------LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLR 155
Query: 1646 RLSTRQGKTAVILTTHSM-NEAQALCTRIGIMVGGQL 1681
RL+ G+T +I + H +E L ++ ++ G++
Sbjct: 156 RLA-DTGRT-IICSIHQPSSEIFELFDKLLLLSQGRV 190
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 3e-28
Identities = 69/241 (28%), Positives = 124/241 (51%), Gaps = 13/241 (5%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1523
+I L N+ K + + A+ ++ + GE FG +G +GAGK+T L +I+ E PT
Sbjct: 1 MIELENVSKTFGQ-TGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT 59
Query: 1524 DGTAFIFGKDIRSDPKA----ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMD 1579
G+ F+ G+D+ + +A R+ IG Q LL TV E++ + GV + +
Sbjct: 60 SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIK 119
Query: 1580 DVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF 1639
V E L L A + LSGG K+++++A A+ +P I++ DE ++ +DP +
Sbjct: 120 QRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQS 179
Query: 1640 MWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS-------PQHLKT 1692
+ E++ ++ G T ++L TH M + +C R+ ++ G+L G+ P+H T
Sbjct: 180 ILELLKDINRELGLT-IVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKHAIT 238
Query: 1693 R 1693
+
Sbjct: 239 Q 239
|
Length = 339 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 5e-28
Identities = 62/229 (27%), Positives = 108/229 (47%), Gaps = 21/229 (9%)
Query: 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1522
+I L+N+ G K + L++ V GE + +G NGAGKTT LS+++GE P
Sbjct: 30 PLIELKNVSVRRNG------KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPP 83
Query: 1523 TDGTAFIFGK-----DIRSDPKAARRLIGYC-PQFDA-LLEYLTVQEH-LELYARIKGVA 1574
+ G + G+ + + R+ IG + TV++ L + G+
Sbjct: 84 SSGDVTLLGRRFGKGETIFE---LRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIY 140
Query: 1575 EYRMDDVV---MEKLVEFDLLKH-AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPST 1630
+ + + L+E KH A +P +LS G +R++ +A A++ DP ++ILDEP+
Sbjct: 141 QEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQ 200
Query: 1631 GMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGG 1679
G+D IA+ + + L+ G A++ TH E T ++ G
Sbjct: 201 GLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEG 249
|
Length = 257 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 7e-28
Identities = 75/231 (32%), Positives = 117/231 (50%), Gaps = 11/231 (4%)
Query: 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1522
A + +NL K Y G + V ++ +V +GE G LG NGAGKTTT M+ G
Sbjct: 2 ATLTAKNLAKAYKGRR------VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR 55
Query: 1523 TDGTAFIFGKDIRSDP--KAARRLIGYCPQFDALLEYLTVQEHLELYARI-KGVAEYRMD 1579
G I +DI P ARR IGY PQ ++ L+V ++L +I ++ + +
Sbjct: 56 DAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRE 115
Query: 1580 DVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF 1639
D E + EF + +LSGG +R++ +A A+ +P ++LDEP G+DPI+
Sbjct: 116 DRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVID 175
Query: 1640 MWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
+ +I L R V++T H++ E A+C R I+ G L G+P +
Sbjct: 176 IKRIIEHL--RDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEI 224
|
Length = 241 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 119 bits (302), Expect = 8e-28
Identities = 64/226 (28%), Positives = 114/226 (50%), Gaps = 16/226 (7%)
Query: 560 IQIRKLHKVYATKRGNC-------CAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGL 612
+ +R L K Y +++G AV+ + L E + L L+G +G+GKST +L GL
Sbjct: 281 LSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGL 340
Query: 613 IPPTTGDALVFGKNITADMDEIRKGL-----GVCPQYDILFPELTVREHL-EMFAVLKGV 666
+PP++G + G+++ E+R+ Y L P +TV + L E + G
Sbjct: 341 LPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGG 400
Query: 667 KEELLESVVAEMVDEVGLADKV-NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGM 725
+ VAE+++ VGL + + LSGG ++++++ AL + K++ILDEP S +
Sbjct: 401 SGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSAL 460
Query: 726 DPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANG 769
D L+K +++ G L +H + + DR+A+M +G
Sbjct: 461 DVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDG 506
|
Length = 539 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 9e-28
Identities = 74/274 (27%), Positives = 133/274 (48%), Gaps = 14/274 (5%)
Query: 1478 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDI-RS 1536
K++ V V+ + V+ GE F +G +G+GK+T + +++ PT G + GKDI +
Sbjct: 36 KKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKL 95
Query: 1537 DPKAARRL----IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL 1592
R L I Q ALL + TV E++ ++GV + ++ +E L L
Sbjct: 96 SAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLE 155
Query: 1593 KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1652
+A K LSGG ++++ +A A+ DP I+++DE + +DP+ + M + + L +
Sbjct: 156 GYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLK 215
Query: 1653 KTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN-----FLELEVKPTEV 1707
KT ++ TH ++EA + RI IM G++ +G+P+ + N F+ V + V
Sbjct: 216 KT-IVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYVRDFVR-NVDRSRV 273
Query: 1708 SSVD--LEDLCQIIQERVFDIPSQRRSLLDDLEV 1739
+ + +I++ D P LL D
Sbjct: 274 LTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGR 307
|
Length = 386 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 1e-27
Identities = 63/240 (26%), Positives = 118/240 (49%), Gaps = 15/240 (6%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
+ +RNL VY GGK A A+++++ ++ GE G +G +G+GK+T +++G E P+
Sbjct: 4 LSVRNLSIVYGGGKF--AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS 61
Query: 1525 GTAFIFGKDIRSD--PKAARRLIGYCPQ--FDALLEYLTVQEHLELYARIKGVAEYRMDD 1580
G+ + GK + KA R + Q + +L TV L R G+++ +
Sbjct: 62 GSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRI 121
Query: 1581 VVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1640
+ V + LSGG ++++++A A+I +P ++ILDEP++ +D + +
Sbjct: 122 AELLDQVGLP-PSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQI 180
Query: 1641 WEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS-------PQHLKTR 1693
++ L ++ + +H + + +C RI +M GQ+ IG P H TR
Sbjct: 181 LNLLLELK-KERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSHPYTR 239
|
Length = 252 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 1e-27
Identities = 57/197 (28%), Positives = 97/197 (49%), Gaps = 35/197 (17%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP--TTGDALVFGKNITADMDEIRK 636
+ ++ ++ A++G +GAGKST ++ L G +G+ L+ G+ + D RK
Sbjct: 25 LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPL--DKRSFRK 82
Query: 637 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALS 696
+G PQ DIL P LTVRE L A L+G LS
Sbjct: 83 IIGYVPQDDILHPTLTVRETLMFAAKLRG-----------------------------LS 113
Query: 697 GGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-KKGRIILLTTHSM-D 754
GG ++++S+ + L+ + ++ LDEPTSG+D S L++++ GR I+ + H
Sbjct: 114 GGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSS 173
Query: 755 EAEELGDRIAIMANGSL 771
E EL D++ +++ G +
Sbjct: 174 EIFELFDKLLLLSQGRV 190
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 1e-27
Identities = 55/218 (25%), Positives = 115/218 (52%), Gaps = 14/218 (6%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I+ + K Y G A++ + L + + + L L G +GAGK+T + +L G + P+ G
Sbjct: 2 IEFHNVSKAYP---GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQ 58
Query: 620 ALVFGKNIT----ADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVV 675
+ G+++ + +R+ +GV Q L P+ TV E++ + ++G KE ++ V
Sbjct: 59 VRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRV 118
Query: 676 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ 735
+ +VGL K + LSGG ++++++ A++ +++ DEPT +DP L+ +
Sbjct: 119 GAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDP---DLSER 175
Query: 736 LIKKIKK----GRIILLTTHSMDEAEELGDRIAIMANG 769
++ +K+ G +++ TH + + + R+ I+ +G
Sbjct: 176 ILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDG 213
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 2e-27
Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 3/223 (1%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 637
AV + + + +I+ LG NGAGKSTT+ ML GL+ PT+G V GK+ +E +
Sbjct: 39 AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRS 98
Query: 638 LG-VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALS 696
+G V Q L+ +L + LE+ ++ + ++ + + + + L + VR LS
Sbjct: 99 IGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLS 158
Query: 697 GGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI--KKGRIILLTTHSMD 754
G + + L AL+ KV+ LDEPT G+D + + +K+ ++ +LLTTH D
Sbjct: 159 LGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFD 218
Query: 755 EAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKSAP 797
+ L DR+ ++ G L G+ L+ Q+G ++
Sbjct: 219 DIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEFSVELKQA 261
|
Length = 325 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 2e-27
Identities = 68/218 (31%), Positives = 124/218 (56%), Gaps = 6/218 (2%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I++ + KV+ A+N++ L + QI ++G +GAGKST I + L PT+G
Sbjct: 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGS 61
Query: 620 ALVFGKNIT----ADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVV 675
+V G+++T +++ + R+ +G+ Q+ L TV ++ + L ++ ++ V
Sbjct: 62 VIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKV 121
Query: 676 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ 735
E++ VGL DK + LSGG K+++++ AL + KV++ DE TS +DP + + +
Sbjct: 122 TELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILE 181
Query: 736 LIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSL 771
L+K+I + G ILL TH MD + + D +A+++NG L
Sbjct: 182 LLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 219
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 2e-27
Identities = 67/224 (29%), Positives = 121/224 (54%), Gaps = 13/224 (5%)
Query: 1467 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1526
+ NL K + K + ++ V+ G+ F LG G+GK+ L I+G P G
Sbjct: 3 VENLSKDWKEFKLKN-------VSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGK 55
Query: 1527 AFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVME-- 1584
+ GKDI + P R I Y PQ AL ++TV +++ + + V + ++ V+E
Sbjct: 56 ILLNGKDITNLPPEKRD-ISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIA 114
Query: 1585 KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVI 1644
+++ D L + +KP TLSGG ++++++A A++ +P I++LDEP + +D K + E +
Sbjct: 115 EMLGIDHLLN-RKPE-TLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREEL 172
Query: 1645 SRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1688
++ ++ V+ TH EA AL ++ IM+ G+L +G P+
Sbjct: 173 KKIR-KEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPE 215
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 2e-27
Identities = 50/200 (25%), Positives = 103/200 (51%), Gaps = 12/200 (6%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 637
A+ + +Y+ + + ++GHNGAGKST + ++ G+ PT+G V GK + ++ G
Sbjct: 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK-VAPLIEL---G 97
Query: 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSG 697
G PELT RE++ + ++ G+ + ++ V E+++ L D ++ V+ S
Sbjct: 98 AG-------FDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSS 150
Query: 698 GMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIK-KIKKGRIILLTTHSMDEA 756
GM +L+ +A + +++LDE + D + + ++K + I+L +H +
Sbjct: 151 GMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAI 210
Query: 757 EELGDRIAIMANGSLKCCGS 776
++ DR + +G ++ GS
Sbjct: 211 KQYCDRAIWLEHGQIRMEGS 230
|
Length = 249 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 3e-27
Identities = 58/199 (29%), Positives = 100/199 (50%), Gaps = 12/199 (6%)
Query: 1481 DAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKA 1540
+ ++F V+ GE +G NGAGK+T L I G PT G+ +FGK + +
Sbjct: 10 GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKE--- 66
Query: 1541 ARRLIGYCPQ-FDALLEY-LTVQE--HLELYARIKGVAEYRMDD--VVMEKLVEFDLLKH 1594
R+ IGY PQ ++ ++V++ + LY D V E L L +
Sbjct: 67 -RKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSEL 125
Query: 1595 AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKT 1654
A + LSGG ++++ +A A++ DP +++LDEP G+DP + ++E++ L R+G T
Sbjct: 126 ADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELR-REGMT 184
Query: 1655 AVILTTHSMNEAQALCTRI 1673
+++ TH + R+
Sbjct: 185 -ILVVTHDLGLVLEYFDRV 202
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 4e-27
Identities = 64/227 (28%), Positives = 122/227 (53%), Gaps = 21/227 (9%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I+++ L K Y A+ + L + + +++A++G +GAGKST + L GL+ PT+G+
Sbjct: 4 IEVKNLSKTYPGGHQ---ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE 60
Query: 620 ALVFGKNITA----DMDEIRKGLGVCPQYDILFPELTVRE--------HLEMFAVLKGV- 666
L G IT ++ ++R+ +G+ Q L P L+V E + + L G+
Sbjct: 61 ILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLF 120
Query: 667 -KEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGM 725
KE+ +++ A ++ VG+ DK LSGG ++++++ AL+ K+++ DEP + +
Sbjct: 121 SKEDKAQALDA--LERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASL 178
Query: 726 DPYSMRLTWQLIKKI--KKGRIILLTTHSMDEAEELGDRIAIMANGS 770
DP S + ++K I + G +++ H +D A++ DRI + G
Sbjct: 179 DPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGR 225
|
Length = 258 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 6e-27
Identities = 67/204 (32%), Positives = 110/204 (53%), Gaps = 15/204 (7%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFL-GTNGAGKTTTLSMISGEEYP 1522
+I N+ K YPGG A+H ++ ++ GE F FL G +GAGKTT L ++ G P
Sbjct: 1 MIEFHNVSKAYPGGVA-----ALHDVSLHIRKGE-FLFLTGPSGAGKTTLLKLLYGALTP 54
Query: 1523 TDGTAFIFGKDI----RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRM 1578
+ G I G+D+ RR IG Q LL TV E++ L ++G E +
Sbjct: 55 SRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREI 114
Query: 1579 DDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP-IAK 1637
V L + L A LSGG ++++++A A++ PP+++ DEP+ +DP +++
Sbjct: 115 QRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSE 174
Query: 1638 RFMWEVISRLSTRQGKTAVILTTH 1661
R + +++ RL+ ++G T VI+ TH
Sbjct: 175 RIL-DLLKRLN-KRG-TTVIVATH 195
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 6e-27
Identities = 50/199 (25%), Positives = 102/199 (51%), Gaps = 12/199 (6%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 637
A+ + + + + L+G NGAGKST + +L G+ PP +G V G+ +++ + G
Sbjct: 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGR-VSSLLGL---G 92
Query: 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSG 697
G PELT RE++ + L G+ + ++ + E+++ L D +++ V+ S
Sbjct: 93 GG-------FNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSS 145
Query: 698 GMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIK-KIKKGRIILLTTHSMDEA 756
GMK +L+ IA + ++++DE + D + ++ +K+G+ ++L +H
Sbjct: 146 GMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSI 205
Query: 757 EELGDRIAIMANGSLKCCG 775
+ L DR ++ G ++ G
Sbjct: 206 KRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 7e-27
Identities = 75/235 (31%), Positives = 126/235 (53%), Gaps = 27/235 (11%)
Query: 560 IQIRKLHKVY------ATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLI 613
I+I L +Y K A++++ + + + + + L+GH G+GKST I L GL+
Sbjct: 3 IKIENLTHIYMEGTPFEKK-----ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLL 57
Query: 614 PPTTGDALVFGKNIT---ADMDEIRKGLGVCPQYD--ILFPELTVREHLEMFAVLKGVKE 668
PT+G ++ G +IT + +IRK +G+ QY LF E T+ + + + G+ E
Sbjct: 58 KPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEE-TIEKDIAFGPINLGLSE 116
Query: 669 ELLESVVAEMVDEVGL-----ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTS 723
E +E+ V ++ VGL DK LSGG KR++++ + + K++ILDEPT+
Sbjct: 117 EEIENRVKRAMNIVGLDYEDYKDKSPF---ELSGGQKRRVAIAGVVAMEPKILILDEPTA 173
Query: 724 GMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
G+DP IK++ K I+L +HSM++ +L DRI +M G + G+
Sbjct: 174 GLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGT 228
|
Length = 287 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 7e-27
Identities = 61/221 (27%), Positives = 114/221 (51%), Gaps = 20/221 (9%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+++R + K + A + + L++ + +I ALLG NGAGKST + +L GL P +G+
Sbjct: 5 LEMRGITKRF----PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGE 60
Query: 620 ALVFGK--NITADMDEIRKGLGVCPQYDILFPELTVREHL--------EMFAVLKGVKEE 669
V GK I + D IR G+G+ Q+ +L P LTV E++ + +
Sbjct: 61 IRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARAR 120
Query: 670 LLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYS 729
+ E+ + GL + V LS G ++++ + AL ++++ILDEPT+ + P
Sbjct: 121 -----IKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQE 175
Query: 730 MRLTWQLIKKIKK-GRIILLTTHSMDEAEELGDRIAIMANG 769
+++++++ G+ I+ TH + E + DR+ ++ G
Sbjct: 176 ADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRG 216
|
Length = 501 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 1e-26
Identities = 59/182 (32%), Positives = 104/182 (57%), Gaps = 3/182 (1%)
Query: 592 LALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPEL 651
+LG G+GKS + + G I P +G L+ GK+IT ++ ++ + PQ LFP +
Sbjct: 28 FVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT-NLPPEKRDISYVPQNYALFPHM 86
Query: 652 TVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIG 711
TV +++ + V ++ +E V E+ + +G+ +N LSGG ++++++ AL+
Sbjct: 87 TVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVV 146
Query: 712 DSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANG 769
+ K+++LDEP S +D + + +KKI+K G +L TH +EA L D++AIM NG
Sbjct: 147 NPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNG 206
Query: 770 SL 771
L
Sbjct: 207 KL 208
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 1e-26
Identities = 71/275 (25%), Positives = 129/275 (46%), Gaps = 17/275 (6%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
I + N++K + A A+ ++ +++GE LG +GAGK+T L +I+G E P
Sbjct: 3 IRINNVKKRFG------AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDA 56
Query: 1525 GTAFIFGKDIR--SDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVA--EYRMDD 1580
G + G+ + S+ R +G+ Q AL ++TV +++ +++ E +
Sbjct: 57 GRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRA 116
Query: 1581 VVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1640
V E L L A + LSGG ++++++A A+ +P +++LDEP +D ++ +
Sbjct: 117 RVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKEL 176
Query: 1641 WEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ----HLKTRFG- 1695
+ +L R G + TH EA L R+ ++ G++ +G P H +RF
Sbjct: 177 RRWLRKLHDRLG-VTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRFVA 235
Query: 1696 NFLELE-VKPTEVSSVDLEDLCQIIQERVFDIPSQ 1729
FL V P EV L+ I + +P
Sbjct: 236 RFLGEVNVLPGEVILGQLQVGAHDIGLPLQPLPDG 270
|
Length = 345 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 2e-26
Identities = 70/218 (32%), Positives = 127/218 (58%), Gaps = 6/218 (2%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I+++ + KV+ A+N++ L + +I ++G +GAGKST I + L PT+G
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 620 ALVFGKNITA----DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVV 675
LV G+++TA ++ + R+ +G+ Q+ L TV +++ + L G + +++ V
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARV 121
Query: 676 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ 735
E+++ VGL+DK + LSGG K+++++ AL + KV++ DE TS +DP + R +
Sbjct: 122 TELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE 181
Query: 736 LIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSL 771
L+K I + G I+L TH MD + + DR+A++ G L
Sbjct: 182 LLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRL 219
|
Length = 343 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 3e-26
Identities = 68/230 (29%), Positives = 117/230 (50%), Gaps = 16/230 (6%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
I +RN+ K + VA+ ++ + +GE LG +G+GKTT L +I+G E P
Sbjct: 3 IEVRNVSKRFGDF------VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDS 56
Query: 1525 GTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEY----RMDD 1580
GT G+D +D R +G+ Q AL ++TV +++ R+K +E +
Sbjct: 57 GTILFGGEDA-TDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRA 115
Query: 1581 VVME--KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKR 1638
V E KLV+ D L A + LSGG ++++++A A+ +P +++LDEP +D ++
Sbjct: 116 KVHELLKLVQLDWL--ADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRK 173
Query: 1639 FMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1688
+ + RL T V TH EA + R+ +M G++ +G+P
Sbjct: 174 ELRRWLRRLHDELHVTTV-FVTHDQEEALEVADRVVVMNKGRIEQVGTPD 222
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 8e-26
Identities = 62/195 (31%), Positives = 102/195 (52%), Gaps = 11/195 (5%)
Query: 1489 LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYC 1548
L+ + AGE G NGAGKTT +++G + G+ + GK I+ K R+ IGY
Sbjct: 19 LSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIK--AKERRKSIGYV 76
Query: 1549 PQ-FDALLEYLTVQEHLELYARIKGVAEYRMD-DVVMEKLVEFDLLKHAKKPSFTLSGGN 1606
Q D L +V+E EL +K + + V++ L DL ++ +LSGG
Sbjct: 77 MQDVDYQLFTDSVRE--ELLLGLKELDAGNEQAETVLKDL---DLYALKERHPLSLSGGQ 131
Query: 1607 KRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEA 1666
K++L++A A++ ++I DEP++G+D + E+I L+ QGK AVI+ TH
Sbjct: 132 KQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELA-AQGK-AVIVITHDYEFL 189
Query: 1667 QALCTRIGIMVGGQL 1681
+C R+ ++ G +
Sbjct: 190 AKVCDRVLLLANGAI 204
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 8e-26
Identities = 72/233 (30%), Positives = 120/233 (51%), Gaps = 22/233 (9%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIP-- 614
+Q+ L Y K+ A+NS+ L Y N+I AL+G +G+GKST +I+ + L P
Sbjct: 6 LQVSDLSVYYNKKK----ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEV 61
Query: 615 PTTGDALVFGKNI---TADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKE-EL 670
TG + G NI D ++RK +G+ Q FP +++ E++ LKG+K+ ++
Sbjct: 62 TITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQV 120
Query: 671 LESVV------AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSG 724
L+ V A + DEV D+++ LSGG ++++ + L K+++LDEPTS
Sbjct: 121 LDEAVEKSLKGASIWDEV--KDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSA 178
Query: 725 MDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSS 777
+DP S + + +K +LL T SM +A + DR +G L +
Sbjct: 179 LDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDT 231
|
Length = 252 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 9e-26
Identities = 67/237 (28%), Positives = 114/237 (48%), Gaps = 27/237 (11%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1523
I+YL L + G K A++ L+ V GE +G NGAGKTT + +I+G+ P
Sbjct: 2 ILYLEGLSVSFDGFK------ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD 55
Query: 1524 DGTAFIFGKDI--RSDPKAARRLIGYCPQFDALLEYLTVQEHLE------------LYAR 1569
+G+ G D+ + + AR IG Q + E LTV E+LE L+ R
Sbjct: 56 EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFR 115
Query: 1570 IKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPS 1629
+ + R+++V L L A + + LS G K+ L + + ++ DP +++LDEP
Sbjct: 116 LSAEEKDRIEEV----LETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPV 171
Query: 1630 TGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS 1686
GM E++ L+ GK +V++ H M +++ ++ ++ G + GS
Sbjct: 172 AGMTDEETEKTAELLKSLA---GKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGS 225
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 9e-26
Identities = 57/217 (26%), Positives = 100/217 (46%), Gaps = 47/217 (21%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
I +N+ YPG K + ++ +++ GE +G +G+GK+T L ++ PT
Sbjct: 1 IEFKNVSFSYPGR----PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTS 56
Query: 1525 GTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVM 1583
G I G D+R D ++ R+ I Y PQ D L +
Sbjct: 57 GEILIDGVDLRDLDLESLRKNIAYVPQ-DPFL----------------------FSGTIR 93
Query: 1584 EKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEV 1643
E + LSGG ++++++A A++ DPPI+ILDE ++ +DP + + E
Sbjct: 94 ENI---------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEA 138
Query: 1644 ISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQ 1680
+ L +GKT VI+ H ++ + RI ++ G+
Sbjct: 139 LRAL--AKGKT-VIVIAHRLSTIR-DADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 9e-26
Identities = 67/226 (29%), Positives = 117/226 (51%), Gaps = 21/226 (9%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I++ L K Y + A+ + L++ + +AL+G +GAGKST + L GL+ PT+G
Sbjct: 1 IEVENLSKTYPNGKK---ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGS 57
Query: 620 ALVFGKNITADMDE----IRKGLGVCPQYDILFPELTVRE--------HLEMFAVLKGV- 666
L+ G +I + +R+ +G+ Q L L+V E + L G+
Sbjct: 58 VLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLF 117
Query: 667 -KEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGM 725
KEE + ++ VGL DK LSGG ++++++ AL+ K+++ DEP + +
Sbjct: 118 PKEEKQRA--LAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASL 175
Query: 726 DPYSMRLTWQLIKKI--KKGRIILLTTHSMDEAEELGDRIAIMANG 769
DP S R L+K+I ++G ++++ H +D A E DRI + +G
Sbjct: 176 DPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDG 221
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 1e-25
Identities = 66/225 (29%), Positives = 112/225 (49%), Gaps = 26/225 (11%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
I + NL K YP GK+ A+ ++ S+ GE +G +GAGK+T L ++G PT
Sbjct: 1 IEVENLSKTYPNGKK-----ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTS 55
Query: 1525 GTAFIFGKDIRSDPK----AARRLIGYCPQFDALLEYLTVQEHLELYARIK--------- 1571
G+ I G DI RR IG Q L+E L+V E++ L R+
Sbjct: 56 GSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENV-LSGRLGRRSTWRSLF 114
Query: 1572 ---GVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEP 1628
E + + L LL A + + LSGG ++++++A A++ P +++ DEP
Sbjct: 115 GLFPKEEKQ---RALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEP 171
Query: 1629 STGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRI 1673
+DP + R + +++ R++ +G T VI++ H ++ A+ RI
Sbjct: 172 VASLDPASSRQVMDLLKRINREEGIT-VIVSLHQVDLAREYADRI 215
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 1e-25
Identities = 50/213 (23%), Positives = 98/213 (46%), Gaps = 58/213 (27%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+++R + K + G A++ + L++ ++ ALLG NGAGKST + +L GL P +G+
Sbjct: 1 LELRGITKRF----GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGE 56
Query: 620 ALVFGK--NITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAE 677
LV GK + + D R G+ + Q
Sbjct: 57 ILVDGKEVSFASPRDARRAGIAMVYQ---------------------------------- 82
Query: 678 MVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLI 737
LS G ++ + + AL +++++ILDEPT+ + P + +++I
Sbjct: 83 -----------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVI 125
Query: 738 KKIKK-GRIILLTTHSMDEAEELGDRIAIMANG 769
++++ G ++ +H +DE E+ DR+ ++ +G
Sbjct: 126 RRLRAQGVAVIFISHRLDEVFEIADRVTVLRDG 158
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 2e-25
Identities = 61/225 (27%), Positives = 104/225 (46%), Gaps = 14/225 (6%)
Query: 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1522
++ LR + K + G K A+ ++ +V+ GE LG NGAGK+T + ++SG P
Sbjct: 7 PLLELRGISKSFGGVK------ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPP 60
Query: 1523 TDGTAFIFGKDIR-SDPKAARRL-IGYCPQFDALLEYLTVQEHL----ELYARIKGVAEY 1576
G I GK + S P+ A I Q +L+ L+V E++ E R +
Sbjct: 61 DSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRK 120
Query: 1577 RMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIA 1636
M E L L LS ++ + +A A+ D ++ILDEP+ +
Sbjct: 121 AMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKE 180
Query: 1637 KRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
++++I RL QG A+I +H ++E + RI ++ G++
Sbjct: 181 TERLFDLIRRLK-AQGV-AIIYISHRLDEVFEIADRITVLRDGRV 223
|
Length = 500 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 2e-25
Identities = 45/124 (36%), Positives = 76/124 (61%), Gaps = 8/124 (6%)
Query: 603 STTISMLVGLIPPTTGDALVFGKNITADMDE--IRKGLGVCPQYDILFPELTVREHLEMF 660
ST + ++ GL+ PT+G L+ G++ T +RK +GV Q LFPELTVRE+L
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFF- 59
Query: 661 AVLKGVKEELLESVVAEMVDEVGLADKVNIV-VRALSGGMKRKLSLGIALIGDSKVVILD 719
G++++ ++ E ++ VGL D ++ V LSGG K+++++ AL+ K+++LD
Sbjct: 60 ----GLRDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLD 115
Query: 720 EPTS 723
EPT+
Sbjct: 116 EPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 2e-25
Identities = 57/192 (29%), Positives = 93/192 (48%), Gaps = 11/192 (5%)
Query: 1474 YPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKD 1533
YPGG + L F+ + GE LG NGAGK+T L ++G P G I G+
Sbjct: 1 YPGGPE-----VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEP 55
Query: 1534 I---RSDPKAARRLIGYCPQF-DALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEF 1589
+ R R+ +G Q D L V + + G++E ++ V E L
Sbjct: 56 LDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAV 115
Query: 1590 DLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLST 1649
++P+ LSGG K+++++A A+ P +++LDEP+ G+DP + M ++ RL
Sbjct: 116 GASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRL-- 173
Query: 1650 RQGKTAVILTTH 1661
R V+++TH
Sbjct: 174 RAEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 3e-25
Identities = 72/226 (31%), Positives = 123/226 (54%), Gaps = 21/226 (9%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISML---VGLIPP- 615
I++R L+ Y K A+ + L + +N++ AL+G +G GKST + L LIP
Sbjct: 8 IEVRDLNLYYGDKH----ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGA 63
Query: 616 -TTGDALVFGKNITA---DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELL 671
G+ L+ GKNI D+ E+R+ +G+ Q FP +++ +++ L G+K++ L
Sbjct: 64 RVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKEL 122
Query: 672 ESVV------AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGM 725
+ +V A + DEV D+++ LSGG +++L + AL +V+++DEPTS +
Sbjct: 123 DEIVESSLKKAALWDEV--KDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSAL 180
Query: 726 DPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 771
DP S +LI ++KK I++ TH+M +A + D A G L
Sbjct: 181 DPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGEL 226
|
Length = 253 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 3e-25
Identities = 59/220 (26%), Positives = 123/220 (55%), Gaps = 8/220 (3%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
++ L K Y + + + + L++ + +I+A++G +G+GKST + +L GL PT+G+
Sbjct: 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGE 61
Query: 620 ALVFGKNITA----DMDEIR-KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESV 674
L G++++ + ++R K LG Q+ L P+ T E++ M ++ + +
Sbjct: 62 VLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKER 121
Query: 675 VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTW 734
EM+++VGL ++N LSGG ++++++ AL+ +V+ DEPT +D + ++ +
Sbjct: 122 AYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIF 181
Query: 735 QLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLK 772
L+ ++ + L+ TH ++ A++L DR+ M +G L
Sbjct: 182 DLMLELNRELNTSFLVVTHDLELAKKL-DRVLEMKDGQLF 220
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 4e-25
Identities = 59/247 (23%), Positives = 111/247 (44%), Gaps = 20/247 (8%)
Query: 1467 LRNLRKVYP-----GGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY 1521
+RNL K Y + AV ++F ++ GE G +G +G+GK+T +++G
Sbjct: 283 VRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP 342
Query: 1522 PTDGTAFIFGKDIRSDPKAARRL-----IGYCPQFDALLEYLTVQEHLELYARIKGVAEY 1576
P+ G+ G+D+ RRL + + + +L +TV + L RI G
Sbjct: 343 PSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSG 402
Query: 1577 -RMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP 1634
V E L L + + LSGG ++++++A A+ +P ++ILDEP + +D
Sbjct: 403 AERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDV 462
Query: 1635 IAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL-------RCIGSP 1687
+ + ++ L G + +H + + + R+ +M G++ + +P
Sbjct: 463 SVQAQVLNLLKDLQEELG-LTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENP 521
Query: 1688 QHLKTRF 1694
QH TR
Sbjct: 522 QHPYTRK 528
|
Length = 539 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 4e-25
Identities = 72/208 (34%), Positives = 109/208 (52%), Gaps = 23/208 (11%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFL-GTNGAGKTTTLSMISGEEYP 1522
+I N+ K YPGG+ A+ ++F + GE F FL G +GAGK+T L +I GEE P
Sbjct: 1 MIRFENVSKAYPGGR-----EALRDVSFHIPKGE-FVFLTGPSGAGKSTLLKLIYGEERP 54
Query: 1523 TDGTAFIFGKDIRSDPKAA----RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRM 1578
T G + G D+ RR IG Q LL TV E++ L R+ G +
Sbjct: 55 TRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREI 114
Query: 1579 DDVVMEKLVEFDL--LKHAKK--PSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP 1634
V E L DL LKH + PS LSGG ++++++A A++ P +++ DEP+ +DP
Sbjct: 115 RRRVSEVL---DLVGLKHKARALPS-QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDP 170
Query: 1635 -IAKRFMWEVISRLSTRQGKTAVILTTH 1661
++ M + ++ R G T V++ TH
Sbjct: 171 DLSWEIM-RLFEEIN-RLG-TTVLMATH 195
|
Length = 223 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 5e-25
Identities = 65/223 (29%), Positives = 118/223 (52%), Gaps = 11/223 (4%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I+ R L Y G+ A+N++ N +A++G NGAGKST G++ PT+G
Sbjct: 4 IETRDLCYSY---SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGS 60
Query: 620 ALVFGKNIT-ADMDEIRKGLGVC---PQYDILFPELTVREHLEMFAVLKGVKEELLESVV 675
L+ G+ IT ++ E+RK +G+ P I P TV + + + G+ EE + V
Sbjct: 61 VLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP--TVEQDIAFGPINLGLDEETVAHRV 118
Query: 676 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ 735
+ + +GL + + V LSGG K+++++ + + +V++LDEPT+G+DP ++
Sbjct: 119 SSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELID 178
Query: 736 LIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
+ + + G ++ +TH +D E+ D I +M G + G+
Sbjct: 179 FLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGT 221
|
Length = 277 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 8e-25
Identities = 72/240 (30%), Positives = 120/240 (50%), Gaps = 34/240 (14%)
Query: 1455 VLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLS 1514
L G ++ RN+ YPG A+ +++ +++ GE +G G+GK+T L
Sbjct: 459 RLQGEIE-----FRNVSFAYPG----QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLK 509
Query: 1515 MISGEEYPTDGTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLEL------- 1566
++ G PT+G+ + G DIR DP RR IGY PQ D L Y T+++++ L
Sbjct: 510 LLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQ-DPRLFYGTLRDNIALGAPYADD 568
Query: 1567 -----YARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1621
A + GV + V D+ + S LSGG ++ +++A A++ DPP
Sbjct: 569 EEILRAAELAGV-----TEFVRRHPDGLDMQIGERGRS--LSGGQRQAVALARALLRDPP 621
Query: 1622 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
I++LDEP++ MD ++ + + R GKT ++L TH + L RI +M G++
Sbjct: 622 ILLLDEPTSAMDNRSEERFKDRLKRWL--AGKT-LVLVTHRTS-LLDLVDRIIVMDNGRI 677
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 1e-24
Identities = 55/243 (22%), Positives = 103/243 (42%), Gaps = 19/243 (7%)
Query: 1467 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG----EEYP 1522
+ NL + AV ++F V+ GE G +G +G+GK+T + G
Sbjct: 8 VENLTVEFATDGG--RVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 1523 TDGTAFIFGKDIRSDPKAARRL-----IGYCPQ--FDALLEYLTVQEHLE--LYARIKGV 1573
T G + G+D+ + R I Q +L +T+ + + L KG
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGS 125
Query: 1574 AEYRMDDVV-MEKLVEF-DLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTG 1631
V + + V D + + P LSGG ++++ +A+A+ P ++I DEP+T
Sbjct: 126 RAEARKRAVELLEQVGLPDPERRDRYP-HQLSGGMRQRVMIAMALALKPKLLIADEPTTA 184
Query: 1632 MDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1691
+D + + +++ L G AV+ TH + L R+ +M G++ G + +
Sbjct: 185 LDVTTQAQILDLLKDLQRELG-MAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEIL 243
Query: 1692 TRF 1694
+
Sbjct: 244 SNP 246
|
Length = 539 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 2e-24
Identities = 64/232 (27%), Positives = 105/232 (45%), Gaps = 23/232 (9%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1523
+ +R + K +PG VA ++ SV+ GE LG NGAGK+T + ++ G P
Sbjct: 4 ALEMRGITKRFPG------VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD 57
Query: 1524 DGTAFIFGKDIR-SDPKAARRL-IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDV 1581
G + GK++R P+ A RL IG Q L+ LTV E++ L
Sbjct: 58 SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQA 117
Query: 1582 VMEKLVE------FDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPI 1635
++ E + AK LS G ++++ + A+ ++ILDEP+ + P
Sbjct: 118 R-ARIKELSERYGLPVDPDAK--VADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQ 174
Query: 1636 -AKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS 1686
A I R +GKT +I TH + E A+ R+ ++ G + +G+
Sbjct: 175 EADELF--EILRRLAAEGKT-IIFITHKLKEVMAIADRVTVLRRG--KVVGT 221
|
Length = 501 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 2e-24
Identities = 60/198 (30%), Positives = 113/198 (57%), Gaps = 5/198 (2%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD-MDEIRK 636
A+ ++ + E + +A+LGHNG+GKST +L GL+ P +G+ + G I+ + + EIRK
Sbjct: 24 ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRK 83
Query: 637 GLGVCPQY-DILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRAL 695
+G+ Q D F TV + + K V + ++ ++ ++ +VG+ D ++ + L
Sbjct: 84 KIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNL 143
Query: 696 SGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGR--IILLTTHSM 753
SGG K+++++ L + +++I DE TS +DP R +++ ++K R ++ TH M
Sbjct: 144 SGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDM 203
Query: 754 DEAEELGDRIAIMANGSL 771
DEA L D++ + + G L
Sbjct: 204 DEA-ILADKVIVFSEGKL 220
|
Length = 271 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 3e-24
Identities = 62/201 (30%), Positives = 99/201 (49%), Gaps = 9/201 (4%)
Query: 1485 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDP--KAAR 1542
+ ++ V GE LG NG GKTT L + G G+ + G+DI P + AR
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74
Query: 1543 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKK-PSFT 1601
I Y PQ + LTV+E+L ++ D + E F +LK
Sbjct: 75 AGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYEL---FPVLKEMLGRRGGD 131
Query: 1602 LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP-IAKRFMWEVISRLSTRQGKTAVILTT 1660
LSGG +++L++A A++ P +++LDEP+ G+ P I K + VI RL +G A++L
Sbjct: 132 LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKD-IGRVIRRL-RAEGGMAILLVE 189
Query: 1661 HSMNEAQALCTRIGIMVGGQL 1681
++ A+ L R +M G++
Sbjct: 190 QYLDFARELADRYYVMERGRV 210
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 3e-24
Identities = 83/253 (32%), Positives = 127/253 (50%), Gaps = 18/253 (7%)
Query: 1449 QVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAG 1508
+VE+ + V II +RN+ K Y R K AV +++ V+ GE FG +GT+GAG
Sbjct: 266 EVEKECEVE--VGEPIIKVRNVSKRYISVDRGVVK-AVDNVSLEVKEGEIFGIVGTSGAG 322
Query: 1509 KTTTLSMISGEEYPTDGTAFI-FGKD------IRSDPKA-ARRLIGYCPQFDALLEYLTV 1560
KTT +I+G PT G + G + D + A+R IG Q L + TV
Sbjct: 323 KTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTV 382
Query: 1561 QEHLELYARIKGVAEY-RMDDVVMEKLVEFDLLKHA----KKPSFTLSGGNKRKLSVAIA 1615
++L ++ E RM V+ K+V FD K K P LS G + ++++A
Sbjct: 383 LDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPD-ELSEGERHRVALAQV 441
Query: 1616 MIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGI 1675
+I +P IVILDEP+ MDPI K + I + +T +I+ +H M+ +C R +
Sbjct: 442 LIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIV-SHDMDFVLDVCDRAAL 500
Query: 1676 MVGGQLRCIGSPQ 1688
M G++ IG P+
Sbjct: 501 MRDGKIVKIGDPE 513
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 3e-24
Identities = 51/194 (26%), Positives = 105/194 (54%), Gaps = 6/194 (3%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 637
A+ + LT+ +++ +LG +G GK+T ++++ G + P+ G + G+ I E
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAE---- 75
Query: 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSG 697
GV Q + L P L V +++ L+G+++ + +M+ VGL + + LSG
Sbjct: 76 RGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSG 135
Query: 698 GMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDE 755
GM++++ + AL + ++++LDEP +D + +L+ + + G+ +LL TH ++E
Sbjct: 136 GMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEE 195
Query: 756 AEELGDRIAIMANG 769
A L R+ +++ G
Sbjct: 196 ALFLATRLVVLSPG 209
|
Length = 259 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 3e-24
Identities = 80/241 (33%), Positives = 116/241 (48%), Gaps = 23/241 (9%)
Query: 1478 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD 1537
KR A A+ ++ SV+ GE LG +G GKTT L +I+G E T GT + G+DI
Sbjct: 12 KRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRL 71
Query: 1538 PKAARRLIGYCPQFDALLEYLTVQEHLE--LYARIKGVAEYRMDDVVMEKLVEFDLLKHA 1595
P R G Q AL LTV +++ L R G AE + V E L L
Sbjct: 72 PPQKRDY-GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVA--ERVAELLDLVGLPGSE 128
Query: 1596 KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK---RFMWEVISRLSTRQG 1652
+K LSGG ++++++A A+ P +++LDEP + +D A+ E I +L R G
Sbjct: 129 RKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALD--ARVREHLRTE-IRQLQRRLG 185
Query: 1653 KTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ----HLKTRF-------GNFLELE 1701
T I+ TH EA ++ RI +M G + +G+PQ H T F N+L
Sbjct: 186 VTT-IMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPFVADFVGEVNWLPGT 244
Query: 1702 V 1702
Sbjct: 245 R 245
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 4e-24
Identities = 71/228 (31%), Positives = 121/228 (53%), Gaps = 24/228 (10%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIPP- 615
I+I L+ Y K A+ ++ L + +NQ+ AL+G +G GKST +++ + L+P
Sbjct: 2 IEIENLNLFYGEKE----ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGV 57
Query: 616 -TTGDALVFGKNITA---DMDEIRKGLGVCPQYDILFPE-------LTVREH-LEMFAVL 663
G L G++I D+ E+R+ +G+ Q FP R H ++ L
Sbjct: 58 RIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKEL 117
Query: 664 KGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTS 723
+ EE L+ A + DEV D+++ LSGG +++L + AL + +V++LDEPTS
Sbjct: 118 DEIVEESLKK--AALWDEV--KDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTS 173
Query: 724 GMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 771
+DP + +LI+++KK I++ TH+M +A + DR A +G L
Sbjct: 174 ALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGEL 221
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 4e-24
Identities = 63/202 (31%), Positives = 96/202 (47%), Gaps = 13/202 (6%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
I N+ K YP G A+ + S+ AGE +G +GAGK+T L +I EE PT
Sbjct: 1 IEFINVTKTYPNGT-----AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTS 55
Query: 1525 GTAFIFGKDIRSDPKAA----RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDD 1580
GT + G+D+ A RR IG Q LL V E++ + GV +
Sbjct: 56 GTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRK 115
Query: 1581 VVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1640
V L L + LSGG ++++++A A++ P I+I DEP+ +DP
Sbjct: 116 RVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDP---DTT 172
Query: 1641 WEVISRL-STRQGKTAVILTTH 1661
WE+++ L + T V++ TH
Sbjct: 173 WEIMNLLKKINKAGTTVVVATH 194
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 4e-24
Identities = 73/250 (29%), Positives = 124/250 (49%), Gaps = 14/250 (5%)
Query: 1450 VERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGK 1509
+ R + + ++ +RNL K + D + AV ++ ++ GE F LG +G GK
Sbjct: 5 IPRPQAKTRKALTPLLEIRNLTKSF------DGQHAVDDVSLTIYKGEIFALLGASGCGK 58
Query: 1510 TTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYAR 1569
+T L M++G E PT G + G D+ P +R I Q AL ++TV++++ +
Sbjct: 59 STLLRMLAGFEQPTAGQIMLDGVDLSHVP-PYQRPINMMFQSYALFPHMTVEQNIAFGLK 117
Query: 1570 IKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPS 1629
+ + + V E L + + AK+ LSGG ++++++A ++ P +++LDEP
Sbjct: 118 QDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPM 177
Query: 1630 TGMD-PIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP- 1687
+D + R EV+ L R G T V + TH EA + RI IM G+ IG P
Sbjct: 178 GALDKKLRDRMQLEVVDILE-RVGVTCV-MVTHDQEEAMTMAGRIAIMNRGKFVQIGEPE 235
Query: 1688 ---QHLKTRF 1694
+H TR+
Sbjct: 236 EIYEHPTTRY 245
|
Length = 377 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 5e-24
Identities = 55/217 (25%), Positives = 108/217 (49%), Gaps = 8/217 (3%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I+ + K Y A++ + +++ + + L+G +GAGKST + ++ PT+G
Sbjct: 1 IEFINVTKTYP---NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGT 57
Query: 620 ALVFGKNITADMDE----IRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVV 675
V G++++ +R+ +GV Q L P+ V E++ + GV + V
Sbjct: 58 IRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRV 117
Query: 676 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ 735
++ VGL+ K + LSGG ++++++ A++ ++I DEPT +DP +
Sbjct: 118 PAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMN 177
Query: 736 LIKKI-KKGRIILLTTHSMDEAEELGDRIAIMANGSL 771
L+KKI K G +++ TH+ + + R+ + G L
Sbjct: 178 LLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 6e-24
Identities = 67/221 (30%), Positives = 108/221 (48%), Gaps = 21/221 (9%)
Query: 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTG 618
C+ I K + K + L ++ + G +GAGKST + + GL P G
Sbjct: 3 CVDIEKRLPDFTLK---------IDFDL-NEEVTGIFGASGAGKSTLLRCIAGLEKPDGG 52
Query: 619 -----DALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLES 673
++F ++ ++ +G+ Q LFP L VRE+L LK +
Sbjct: 53 TIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAF--GLKRKRNREDRI 110
Query: 674 VVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLT 733
V E++D +GL +N LSGG K++++L AL ++++LDEP S +D ++RL
Sbjct: 111 SVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDR-ALRLQ 169
Query: 734 WQ-LIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSL 771
+K+IKK ++ TH + EAE L DRI +M +G L
Sbjct: 170 LLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRL 210
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 6e-24
Identities = 64/200 (32%), Positives = 111/200 (55%), Gaps = 7/200 (3%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD---MDEI 634
A+ + + +++ALLG NGAGKST G++ PT+G+ L+ G+ I D + E+
Sbjct: 17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEV 76
Query: 635 RKGLGVCPQY--DILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVV 692
RK +G+ Q D LF TV E + + G+ +E +E V E + VG+ N
Sbjct: 77 RKTVGIVFQNPDDQLFAP-TVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPP 135
Query: 693 RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-KKGRIILLTTH 751
LSGG K+++++ L ++++LDEPTSG+DP +L+ + K+G I+++TH
Sbjct: 136 HHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTH 195
Query: 752 SMDEAEELGDRIAIMANGSL 771
+D D++ +M++G +
Sbjct: 196 DVDLVPVYADKVYVMSDGKI 215
|
Length = 275 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 6e-24
Identities = 60/210 (28%), Positives = 114/210 (54%), Gaps = 19/210 (9%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 636
A++ L LT+ Q+ AL+G +GAGKST +++L+G + PT G+ V G ++ + RK
Sbjct: 336 ALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRK 395
Query: 637 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVV---- 692
+ Q LF T+RE++ + + + + + +D+ GL + V
Sbjct: 396 QISWVSQNPYLFAG-TIRENILLA------RPDASDEEIIAALDQAGLLEFVPKPDGLDT 448
Query: 693 ------RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRII 746
LSGG ++L+L AL+ + +++LDEPT+ +D + ++ Q ++++ K + +
Sbjct: 449 VIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTV 508
Query: 747 LLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
L+ TH +++A + DRI ++ NG L G+
Sbjct: 509 LVITHRLEDAADA-DRIVVLDNGRLVEQGT 537
|
Length = 559 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 7e-24
Identities = 70/226 (30%), Positives = 120/226 (53%), Gaps = 26/226 (11%)
Query: 564 KLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVF 623
L K Y +R V + LT+ +I+ LLG NGAGK+TT M+VG++P G
Sbjct: 8 NLAKAYKGRR----VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAG----- 58
Query: 624 GKNITADMDEI---------RKGLGVCPQYDILFPELTVREHLEMFAVL---KGVKEELL 671
NI D ++I R+G+G PQ +F L+V ++L AVL + E
Sbjct: 59 --NIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNL--MAVLQIRDDLSAEQR 114
Query: 672 ESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMR 731
E E+++E + + + ++LSGG +R++ + AL + K ++LDEP +G+DP S+
Sbjct: 115 EDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVI 174
Query: 732 LTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
++I+ ++ G +L+T H++ E + +R I++ G L G+
Sbjct: 175 DIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGT 220
|
Length = 241 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 7e-24
Identities = 65/243 (26%), Positives = 116/243 (47%), Gaps = 26/243 (10%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1523
++ + NL KVYP GK A+ ++ ++ GE +G +GAGK+T L I+ P+
Sbjct: 1 MLEVENLSKVYPNGK-----QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS 55
Query: 1524 DGTAFIFGKDI----RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYAR------IKGV 1573
G+ + G DI + RR IG Q L+E LTV E++ L+ R + +
Sbjct: 56 SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENV-LHGRLGYKPTWRSL 114
Query: 1574 ------AEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDE 1627
+ + L L A + + LSGG ++++++A A+ P +++ DE
Sbjct: 115 LGRFSEEDKER---ALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADE 171
Query: 1628 PSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1687
P +DP + + + + R++ G T VI+ H ++ A+ RI + G++ G+P
Sbjct: 172 PIASLDPKTSKQVMDYLKRINKEDGIT-VIINLHQVDLAKKYADRIVGLKAGEIVFDGAP 230
Query: 1688 QHL 1690
L
Sbjct: 231 SEL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 7e-24
Identities = 68/205 (33%), Positives = 111/205 (54%), Gaps = 33/205 (16%)
Query: 593 ALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-----DMDEIRKGLGVCPQYDIL 647
A++GH G+GKST + L GL+ PT+G + + ITA + +RK +G+ Q
Sbjct: 37 AIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQ---- 92
Query: 648 FPELTVREHLEMFAVLK---------GVKEELLESVVAEMVDEVGLADKVNIVVRA---L 695
FPE + E V K GV EE + EM++ VGL +++ + R+ L
Sbjct: 93 FPEHQLFEE----TVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL--LARSPFEL 146
Query: 696 SGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYS----MRLTWQLIKKIKKGRIILLTTH 751
SGG R++++ L + +V++LDEPT+G+DP M + ++L K +KG +L TH
Sbjct: 147 SGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHK--EKGLTTVLVTH 204
Query: 752 SMDEAEELGDRIAIMANGSLKCCGS 776
SM++A D+I +M G++ G+
Sbjct: 205 SMEDAARYADQIVVMHKGTVFLQGT 229
|
Length = 290 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 99.4 bits (249), Expect = 8e-24
Identities = 55/216 (25%), Positives = 95/216 (43%), Gaps = 59/216 (27%)
Query: 1467 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1526
LR + K + G K A+ ++ SV+ GE LG NGAGK+T + ++SG P G
Sbjct: 3 LRGITKRFGGVK------ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGE 56
Query: 1527 AFIFGKDIR-SDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEK 1585
+ GK++ + P+ ARR G+A +V
Sbjct: 57 ILVDGKEVSFASPRDARRA---------------------------GIA------MV--- 80
Query: 1586 LVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVIS 1645
+ LS G ++ + +A A+ + ++ILDEP+ + P +++VI
Sbjct: 81 --------------YQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIR 126
Query: 1646 RLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
RL QG AVI +H ++E + R+ ++ G++
Sbjct: 127 RL-RAQGV-AVIFISHRLDEVFEIADRVTVLRDGRV 160
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 9e-24
Identities = 69/243 (28%), Positives = 117/243 (48%), Gaps = 28/243 (11%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1523
I+YL + V GG + A++ L+FSV GE +G NGAGKTT + +I+G+ P
Sbjct: 5 ILYLDGV-SVSFGGFK-----ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ 58
Query: 1524 DGTAFIFG-KDIRSDPKA--ARRLIGYCPQFDALLEYLTVQEHLE------------LYA 1568
+G G D+ P+ AR IG Q + E LTV+E+LE L+A
Sbjct: 59 EGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFA 118
Query: 1569 RIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEP 1628
R++ R+D++ L L + + LS G K+ L + + + DP +++LDEP
Sbjct: 119 RLRAEERRRIDEL----LATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEP 174
Query: 1629 STGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1688
GM E++ L+ GK ++++ H M + + ++ ++ G + GS
Sbjct: 175 VAGMTDAETEKTAELLKSLA---GKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLD 231
Query: 1689 HLK 1691
++
Sbjct: 232 EVQ 234
|
Length = 249 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 1e-23
Identities = 68/231 (29%), Positives = 120/231 (51%), Gaps = 15/231 (6%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1523
I+ R+L+ YP D A+ + F + GE LG NGAGK+T +G PT
Sbjct: 1 ILETRDLKYSYP-----DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT 55
Query: 1524 DGTAFIFGKDIRSDPKA---ARRLIGYCPQF-DALLEYLTVQEHLELYARIKGVAEYRMD 1579
G I G+ I+ D K+ R+ +G Q D L TV+E + G+++ ++
Sbjct: 56 SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVE 115
Query: 1580 DVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVA--IAMIGDPPIVILDEPSTGMDPIAK 1637
V E L + KP LSGG K+++++A +AM P I++LDEP++G+DP+
Sbjct: 116 KRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAM--KPEIIVLDEPTSGLDPMGA 173
Query: 1638 RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1688
+ +++ L+ ++G T +I++TH ++ ++ +M G++ G+P+
Sbjct: 174 SQIMKLLYDLN-KEGIT-IIISTHDVDLVPVYADKVYVMSDGKIIKEGTPK 222
|
Length = 275 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 1e-23
Identities = 69/218 (31%), Positives = 103/218 (47%), Gaps = 26/218 (11%)
Query: 575 NCCAVNSLQLTL--------YENQILALLGHNGAGKSTTISMLVGLIPPTT---GDALVF 623
C + L ++LA++G +GAGK+T ++ L P G L+
Sbjct: 29 GCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLN 88
Query: 624 GKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEV- 682
G I A E+R Q D+ P LTVREHL A L+ + + + E VDEV
Sbjct: 89 GMPIDAK--EMRAISAYVQQDDLFIPTLTVREHLMFQAHLR-MPRRVTKKEKRERVDEVL 145
Query: 683 ---GLADKVNIV------VRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLT 733
GL N V+ LSGG +++L+ L+ D ++ DEPTSG+D +
Sbjct: 146 QALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSV 205
Query: 734 WQLIKKI-KKGRIILLTTHS-MDEAEELGDRIAIMANG 769
Q++K + +KG+ I+ T H E EL D+I +MA G
Sbjct: 206 VQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEG 243
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 2e-23
Identities = 63/250 (25%), Positives = 116/250 (46%), Gaps = 27/250 (10%)
Query: 1468 RNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG--EEYP--- 1522
+NL +P AV ++F ++ GE G +G +G+GK+ I G +
Sbjct: 5 KNLSVSFPTDAGV--VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARI 62
Query: 1523 TDGTAFIFGKDIRS-DPKAARRL----IGYCPQ--FDALLEYLTVQEHLELYARI--KGV 1573
G GKD+ S K R++ I Q +L +T+ + + R+ KG+
Sbjct: 63 VGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL 122
Query: 1574 AEYRMDDVVME--KLVEF-DLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPST 1630
++ + +E +LV D + K LSGG ++++ +A+A+ +P ++I DEP+T
Sbjct: 123 SKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTT 182
Query: 1631 GMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS---- 1686
+D + + +++ L +G TA+IL TH + + R+ +M G++ G
Sbjct: 183 ALDVTVQAQILDLLKELQREKG-TALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEI 241
Query: 1687 ---PQHLKTR 1693
P+H TR
Sbjct: 242 FKNPKHPYTR 251
|
Length = 316 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 2e-23
Identities = 63/206 (30%), Positives = 115/206 (55%), Gaps = 20/206 (9%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 636
A++++ LT+ + +A++G G+GKST + +L GL PT+G L+ G +I D ++R+
Sbjct: 19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRR 78
Query: 637 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEV------GLADKVNI 690
+G PQ LF T+R+++ + A L E +L + V + GL ++
Sbjct: 79 NIGYVPQDVTLFYG-TLRDNITLGAPL-ADDERILRAAELAGVTDFVNKHPNGLDLQIGE 136
Query: 691 VVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK---GRIIL 747
R LSGG ++ ++L AL+ D +++LDEPTS MD M +L +++++ + ++
Sbjct: 137 RGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMD---MNSEERLKERLRQLLGDKTLI 193
Query: 748 LTTH--SMDEAEELGDRIAIMANGSL 771
+ TH S+ +L DRI +M +G +
Sbjct: 194 IITHRPSLL---DLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-23
Identities = 68/252 (26%), Positives = 118/252 (46%), Gaps = 47/252 (18%)
Query: 551 KQQEVDGRCIQIRKLHKVY-ATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISML 609
+ EV I++R + K Y + RG AV+++ L + E +I ++G +GAGK+T ++
Sbjct: 271 CEVEVGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKII 330
Query: 610 VGLIPPTTGDALVFGKNITADMDEIR--------KGLGVCPQYDILFPELTVREHL---- 657
G++ PT+G+ V + DM + + +G+ Q L+P TV ++L
Sbjct: 331 AGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAI 390
Query: 658 -----EMFAVLK--------GVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLS 704
+ A +K G EE E ++ + DE LS G + +++
Sbjct: 391 GLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDE-------------LSEGERHRVA 437
Query: 705 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRI-----ILLTTHSMDEAEEL 759
L LI + ++VILDEPT MDP + + I K R ++ +H MD ++
Sbjct: 438 LAQVLIKEPRIVILDEPTGTMDPITKV---DVTHSILKAREEMEQTFIIVSHDMDFVLDV 494
Query: 760 GDRIAIMANGSL 771
DR A+M +G +
Sbjct: 495 CDRAALMRDGKI 506
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 99.0 bits (248), Expect = 2e-23
Identities = 62/202 (30%), Positives = 96/202 (47%), Gaps = 39/202 (19%)
Query: 1485 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDI-RSDPKAARR 1543
AV ++F V+AGE G G G G+T + G P G + GK + R P+ A R
Sbjct: 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIR 74
Query: 1544 L-IGYCP---QFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPS 1599
I Y P + + L+ L+V E++ L S
Sbjct: 75 AGIAYVPEDRKREGLVLDLSVAENIAL--------------------------------S 102
Query: 1600 FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILT 1659
LSGGN++K+ +A + DP ++ILDEP+ G+D AK ++ +I L+ GK AV+L
Sbjct: 103 SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELA-DAGK-AVLLI 160
Query: 1660 THSMNEAQALCTRIGIMVGGQL 1681
+ ++E LC RI +M G++
Sbjct: 161 SSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 2e-23
Identities = 60/195 (30%), Positives = 98/195 (50%), Gaps = 18/195 (9%)
Query: 573 RGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMD 632
RG + L TL + L L G NG+GK+T + ++ GL+PP G + G +I
Sbjct: 12 RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPD- 70
Query: 633 EIRKGLGVCPQY----DILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKV 688
+ Y + + P LTV E+LE +A G + E +A ++ VGLA
Sbjct: 71 -----VAEACHYLGHRNAMKPALTVAENLEFWAAFLGGE----ELDIAAALEAVGLAPLA 121
Query: 689 NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIK-KIKKGRIIL 747
++ LS G KR+++L L+ + + ILDEPT+ +D ++ L +LI+ + +G I++
Sbjct: 122 HLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVI 181
Query: 748 LTTHS---MDEAEEL 759
TH + A EL
Sbjct: 182 AATHIPLGLPGAREL 196
|
Length = 207 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 67/193 (34%), Positives = 110/193 (56%), Gaps = 11/193 (5%)
Query: 584 LTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEIRKGLGVCP 642
+ I ++G +GAGKST I ++ LI PT G L+ G +I T D+ ++R+ +G+
Sbjct: 24 VKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVF 83
Query: 643 QYDILFPELTVREHLEMFAVLKGVKEELLESVVAEM-VDEVGL-ADKVNIVVRALSGGMK 700
Q LF E TV++++E +LKG K +V E + VGL + V+ LSGG
Sbjct: 84 QQPHLF-EGTVKDNIEYGPMLKGEK-----NVDVEYYLSIVGLNKEYATRDVKNLSGGEA 137
Query: 701 RKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEE 758
+++S+ L + +V++LDEPTS +DP S + +LI K+K ++ TH+M++A+
Sbjct: 138 QRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKR 197
Query: 759 LGDRIAIMANGSL 771
+GD A + G L
Sbjct: 198 IGDYTAFLNKGIL 210
|
Length = 241 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 3e-23
Identities = 64/224 (28%), Positives = 112/224 (50%), Gaps = 23/224 (10%)
Query: 1470 LRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFI 1529
L+ + GG++ A+ ++F + GE G +G NGAGK+T L +I+G PT G +
Sbjct: 27 LKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKV 86
Query: 1530 FGKDIRSDPKAARRLIGYCPQFDALLEY-LTVQEHLELYARIKGVAEYRMDDVVMEKLVE 1588
GK + LI A + LT +E++ L I G+ +D+ +++++E
Sbjct: 87 TGK-VAP-------LIE----LGAGFDPELTGRENIYLRGLILGLTRKEIDE-KVDEIIE 133
Query: 1589 F-DLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEP-STGMDPIAKRFMWEVISR 1646
F +L +P T S G +L+ ++A +P I++LDE + G D F + + R
Sbjct: 134 FAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVG-DA---AFQEKCLER 189
Query: 1647 LST--RQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1688
L+ + KT ++L +H + + C R + GQ+R GSP+
Sbjct: 190 LNELVEKNKT-IVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPE 232
|
Length = 249 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 3e-23
Identities = 67/246 (27%), Positives = 110/246 (44%), Gaps = 47/246 (19%)
Query: 1465 IYLRNLRKVYP----------------GGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAG 1508
I L N+ K YP A+ ++F V GE G +G NGAG
Sbjct: 1 IELENVSKSYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAG 60
Query: 1509 KTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEY-------LTVQ 1561
K+T L +++G P GT + G+ +LL LT +
Sbjct: 61 KSTLLRLLAGIYPPDSGTVTVRGRVS------------------SLLGLGGGFNPELTGR 102
Query: 1562 EHLELYARIKGVAEYRMDDVVMEKLVEF-DLLKHAKKPSFTLSGGNKRKLSVAIAMIGDP 1620
E++ L R+ G++ +D+ +++++EF +L P T S G K +L+ AIA +P
Sbjct: 103 ENIYLNGRLLGLSRKEIDE-KIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEP 161
Query: 1621 PIVILDEP-STGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGG 1679
I+++DE + G D + + L +QGKT VIL +H + + LC R ++ G
Sbjct: 162 DILLIDEVLAVG-DAAFQEKCQRRLRELL-KQGKT-VILVSHDPSSIKRLCDRALVLEKG 218
Query: 1680 QLRCIG 1685
++R G
Sbjct: 219 KIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 3e-23
Identities = 67/214 (31%), Positives = 120/214 (56%), Gaps = 16/214 (7%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIP--PTTGDALVFGKNI---TA 629
A+ ++ L++ EN++ A++G +G GKST T+++++ ++P TG+ G NI
Sbjct: 27 ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV 86
Query: 630 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK--EELLESVVAEMVDEVGLADK 687
D+ E+RK +G+ Q FP+ ++ +++ + G K ++L E V + D V L D+
Sbjct: 87 DLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKD-VALWDE 144
Query: 688 VNIVVRA----LSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKG 743
V + LSGG +++L + AL + V+++DEPTS +DP S R +LI K+K+
Sbjct: 145 VKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEK 204
Query: 744 RIILLTTHSMDEAEELGDRIAIMANGSLKCCGSS 777
I++ TH+M +A + D+ A G L C +
Sbjct: 205 YTIVIVTHNMQQAARVSDQTAFFYMGELVECNDT 238
|
Length = 259 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 4e-23
Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 8/124 (6%)
Query: 1510 TTTLSMISGEEYPTDGTAFIFGKDIRSDP--KAARRLIGYCPQFDALLEYLTVQEHLELY 1567
+T L +I+G PT GT + G+D K R+ IG Q L LTV+E+L +
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL-FF 59
Query: 1568 ARIKGVAEYRMDDVVMEKLVEFDLLKHA-KKPSFTLSGGNKRKLSVAIAMIGDPPIVILD 1626
A+ R ++ L L ++P TLSGG K+++++A A++ P +++LD
Sbjct: 60 GLRDKEADARAEEA----LERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLD 115
Query: 1627 EPST 1630
EP+
Sbjct: 116 EPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (257), Expect = 6e-23
Identities = 68/212 (32%), Positives = 112/212 (52%), Gaps = 7/212 (3%)
Query: 572 KRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT--- 628
K G V L + E +I ++G +G+GKST + +L LI PT G L+ G +I
Sbjct: 37 KTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKIS 96
Query: 629 -ADMDEIR-KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLAD 686
A++ E+R K + + Q L P +TV ++ L G+ E + + +VGL +
Sbjct: 97 DAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLEN 156
Query: 687 KVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPY-SMRLTWQLIK-KIKKGR 744
+ LSGGM++++ L AL + ++++DE S +DP + +L+K + K R
Sbjct: 157 YAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQR 216
Query: 745 IILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
I+ +H +DEA +GDRIAIM NG + G+
Sbjct: 217 TIVFISHDLDEAMRIGDRIAIMQNGEVVQVGT 248
|
Length = 400 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 99.1 bits (247), Expect = 6e-23
Identities = 65/192 (33%), Positives = 111/192 (57%), Gaps = 8/192 (4%)
Query: 582 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVC 641
+ LT+ + + ++L+GH+G GKST ++++ GL PT+G ++ GK IT + V
Sbjct: 4 VNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM----VV 59
Query: 642 PQYDILFPELTVREH--LEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGM 699
Q L P LTVRE+ L + VL + + ++V E + VGL + + LSGGM
Sbjct: 60 FQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGM 119
Query: 700 KRKLSLGIALIGDSKVVILDEPTSGMDPYSM-RLTWQLIKKIKKGRI-ILLTTHSMDEAE 757
K+++++ AL KV++LDEP +D + L +L++ ++ R+ +L+ TH +DEA
Sbjct: 120 KQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEAL 179
Query: 758 ELGDRIAIMANG 769
L DR+ ++ NG
Sbjct: 180 LLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 7e-23
Identities = 60/210 (28%), Positives = 106/210 (50%), Gaps = 12/210 (5%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEIRKG 637
++ + L L ++LA+LG NGAGKST + L G + P +G+ + G + + +E+ +
Sbjct: 17 LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARH 76
Query: 638 LGVCPQYDIL-FPELTVREHLEMFAV--LKGVKEELLESVVAEMVDEVGLADKVNIVVRA 694
V PQ L FP TV+E ++M + G + E E + A+ + L+ R
Sbjct: 77 RAVLPQNSSLAFP-FTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRT 135
Query: 695 LSGGMKRKLSLGIAL------IGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-KKGRIIL 747
LSGG ++++ L L + + + LDEPTS +D T +L +++ ++G +L
Sbjct: 136 LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVL 195
Query: 748 LTTHSMDEAEELGDRIAIMANGSLKCCGSS 777
H ++ A + DRI ++ G + GS
Sbjct: 196 AVLHDLNLAAQYADRIVLLHQGRVIASGSP 225
|
Length = 259 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.5 bits (248), Expect = 7e-23
Identities = 73/228 (32%), Positives = 122/228 (53%), Gaps = 22/228 (9%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKST---TISMLVGL--IP 614
I+ L Y G+ + + L + +N + AL+G +G GKST T + L+ L
Sbjct: 5 IETVNLRVYY----GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEA 60
Query: 615 PTTGDALVFGKNI-TADMD--EIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV---KE 668
G+ +FG+NI + D+D E+R+ +G+ QY FP LT+ +++ + L G+ K+
Sbjct: 61 RVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKK 120
Query: 669 ELLESV-----VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTS 723
EL E V A + DEV D++N LSGG +++L + AL K++++DEPT+
Sbjct: 121 ELDERVEWALKKAALWDEV--KDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTA 178
Query: 724 GMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 771
+DP +L+ ++KK I+L THS +A + D +A + G L
Sbjct: 179 NIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKL 226
|
Length = 253 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 8e-23
Identities = 65/245 (26%), Positives = 122/245 (49%), Gaps = 23/245 (9%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
I L NL YP GK A+ L +++AG+ +G +GAGK+T L+++ G PT
Sbjct: 321 ISLENLSFRYPDGKP-----ALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQ 375
Query: 1525 GTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELY------ARIKGVAE-- 1575
G + G D+R P+A R+ I + Q + L T++E++ L I +
Sbjct: 376 GEIRVNGIDLRDLSPEAWRKQISWVSQ-NPYLFAGTIRENILLARPDASDEEIIAALDQA 434
Query: 1576 YRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPI 1635
++ V ++ + + LSGG ++L++A A++ +++LDEP+ +D
Sbjct: 435 GLLEFVPKPDGLDTVIGEGGA----GLSGGQAQRLALARALLSPASLLLLDEPTAHLDAE 490
Query: 1636 AKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 1695
++ + + + L+ + KT V++ TH + +A A RI ++ G+L G+ + L + G
Sbjct: 491 TEQIILQALQELA--KQKT-VLVITHRLEDA-ADADRIVVLDNGRLVEQGTHEELSEKQG 546
Query: 1696 NFLEL 1700
+ L
Sbjct: 547 LYANL 551
|
Length = 559 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 99.8 bits (249), Expect = 1e-22
Identities = 69/217 (31%), Positives = 111/217 (51%), Gaps = 28/217 (12%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-----DMD 632
A+ + LT+ + A +GH G+GKST + +L GL PT G V IT+ D+
Sbjct: 22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81
Query: 633 EIRKGLGVCPQYDILFPELTVREHLEMFAVLK---------GVKEELLESVVAEMVDEVG 683
+IRK +G+ Q FPE + E VLK GV +E E++ E + VG
Sbjct: 82 QIRKKVGLVFQ----FPESQLFEE----TVLKDVAFGPQNFGVSQEEAEALAREKLALVG 133
Query: 684 LADKVNIVVRA---LSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI 740
+++ ++ + LSGG R++++ L + K+++LDEPT+G+DP + L KK+
Sbjct: 134 ISE--SLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKL 191
Query: 741 -KKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
+ G I+L TH MD+ D + ++ G L G
Sbjct: 192 HQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGK 228
|
Length = 280 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 1e-22
Identities = 60/205 (29%), Positives = 110/205 (53%), Gaps = 13/205 (6%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 637
A+N L L + E + ++G NGAGKST ++ + G + PT+G L+ G ++T R
Sbjct: 21 ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80
Query: 638 LGVCPQYDIL---FPELTVREHL-------EMFAVLKGVKEELLESVVAEMVD-EVGLAD 686
L D L PELT+ E+L + + + E S + +GL +
Sbjct: 81 LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLEN 140
Query: 687 KVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-KKGRI 745
+++ + LSGG ++ LSL +A + K+++LDE T+ +DP + +L KI ++ ++
Sbjct: 141 RLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKL 200
Query: 746 -ILLTTHSMDEAEELGDRIAIMANG 769
L+ TH+M++A + G+R+ ++ +G
Sbjct: 201 TTLMVTHNMEDALDYGNRLIMLHSG 225
|
Length = 263 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 96.1 bits (240), Expect = 1e-22
Identities = 57/218 (26%), Positives = 96/218 (44%), Gaps = 46/218 (21%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
+ + N+ YPG + + +++FS++ GE +G +G+GK+T +I G PT
Sbjct: 1 LEVENVSFRYPGAEP----PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTS 56
Query: 1525 GTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVM 1583
G + G DI DP +GY PQ D L +
Sbjct: 57 GRVRLDGADISQWDPNELGDHVGYLPQDDELF-----------------------SGSIA 93
Query: 1584 EKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEV 1643
E + LSGG +++L +A A+ G+P I++LDEP++ +D +R + +
Sbjct: 94 ENI---------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQA 138
Query: 1644 ISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
I+ L G T I+ H E A RI ++ G++
Sbjct: 139 IAALKAA-GAT-RIVIAHRP-ETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-22
Identities = 64/219 (29%), Positives = 111/219 (50%), Gaps = 15/219 (6%)
Query: 571 TKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKN---- 626
+ G V++ L + E +I L+G +G+GKST + + GL P + G LV +
Sbjct: 32 DRTGLVLGVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVD 91
Query: 627 -ITADMDEIR----KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDE 681
D +R + + Q L P TV E++ ++G+ + V E ++
Sbjct: 92 VANCDAATLRRLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLEL 151
Query: 682 VGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPY-SMRLTWQLI--- 737
VGLA + LSGGM++++ L A ++ ++++DEP S +DP +L +L+
Sbjct: 152 VGLAQWADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQ 211
Query: 738 KKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
K+KK I+ +H +DEA ++G+RIAIM G + G+
Sbjct: 212 SKLKK--TIVFVSHDLDEALKIGNRIAIMEGGRIIQHGT 248
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 97.6 bits (243), Expect = 2e-22
Identities = 62/222 (27%), Positives = 120/222 (54%), Gaps = 13/222 (5%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I+I + K + G+ A++ + L + ++ALLG +G+GKST + ++ GL P +G
Sbjct: 1 IEIANISKRF----GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGR 56
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 679
+ G++ T + + +G Q+ LF LTVR+++ ++ + +++ V E++
Sbjct: 57 IRLNGQDAT-RVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELL 115
Query: 680 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPY---SMRLTW-- 734
+ V L + LSGG +++++L AL + +V++LDEP +D +R +W
Sbjct: 116 ELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELR-SWLR 174
Query: 735 QLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
+L ++ + TH +EA E+ DRI +M+NG ++ GS
Sbjct: 175 KLHDEVHVTTV--FVTHDQEEAMEVADRIVVMSNGKIEQIGS 214
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 96.1 bits (240), Expect = 3e-22
Identities = 56/215 (26%), Positives = 109/215 (50%), Gaps = 20/215 (9%)
Query: 1467 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1526
L+N+ K + KV + L +++ G+ + +G +G+GK+T L++I E G
Sbjct: 1 LKNISKKFGD------KVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQ 54
Query: 1527 AFIFGKDIRSDPKAA-----RRLIGYCPQFDALLEYLTVQEHLEL---YARIKGVAEYRM 1578
++ G++ R +GY Q AL+E TV+E+L+L Y ++ +
Sbjct: 55 VYLNGQETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREK 114
Query: 1579 DDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKR 1638
+EK L K+ + LSGG ++++++A A++ PP+++ DEP+ +DP +
Sbjct: 115 KKEALEK---VGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRD 171
Query: 1639 FMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRI 1673
+ +++ L+ +GKT +I+ TH E R+
Sbjct: 172 EVLDLLLELN-DEGKT-IIIVTHDP-EVAKQADRV 203
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 96.8 bits (241), Expect = 3e-22
Identities = 67/207 (32%), Positives = 103/207 (49%), Gaps = 13/207 (6%)
Query: 1491 FSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQ 1550
S GE G LG NGAGKTT L I G P GT + G P R IGY PQ
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGA----SPGKGWRHIGYVPQ 56
Query: 1551 -FDALLEYLTVQEHLELYARIKGVAEYR---MDD--VVMEKLVEFDLLKHAKKPSFTLSG 1604
+ ++ H + R + R + D V + L L + A +P LSG
Sbjct: 57 RHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSG 116
Query: 1605 GNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMN 1664
G ++++ VA A+ P +++LDEP TG+D + + E+ L+ TA+++TTH +
Sbjct: 117 GQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELA--GAGTAILMTTHDLA 174
Query: 1665 EAQALCTRIGIMVGGQLRCIGSPQHLK 1691
+A A C R+ +++ G++ G+PQ L+
Sbjct: 175 QAMATCDRV-VLLNGRVIADGTPQQLQ 200
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 99.6 bits (248), Expect = 4e-22
Identities = 66/223 (29%), Positives = 122/223 (54%), Gaps = 9/223 (4%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1523
+I L N+ KV+ G ++ A+++++ V AG+ +G +G +GAGK+T + ++ E PT
Sbjct: 1 MIKLSNITKVFHQGTKTIQ--ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT 58
Query: 1524 DGTAFIFGKDI----RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMD 1579
G+ + G+D+ S+ ARR IG Q LL TV ++ L + + +
Sbjct: 59 SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIK 118
Query: 1580 DVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKR 1638
V E L L KH PS LSGG K+++++A A+ +P +++ DE ++ +DP +
Sbjct: 119 RKVTELLALVGLGDKHDSYPS-NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQ 177
Query: 1639 FMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
+ E++ ++ R G T ++L TH M+ + +C + ++ G+L
Sbjct: 178 SILELLKEINRRLGLT-ILLITHEMDVVKRICDCVAVISNGEL 219
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.5 bits (243), Expect = 4e-22
Identities = 63/209 (30%), Positives = 112/209 (53%), Gaps = 9/209 (4%)
Query: 1474 YPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKD 1533
Y G RS A+ ++ ++ +GE LG +G GKTT L++I+G P+ G+ + G+
Sbjct: 13 YEGKPRS----ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRR 68
Query: 1534 IRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK 1593
I P A R G Q +ALL +L V +++ +++G+ + + ++ + L L
Sbjct: 69 I-EGPGAER---GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEG 124
Query: 1594 HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGK 1653
K + LSGG ++++ +A A+ +P +++LDEP +D + + M E++ L GK
Sbjct: 125 AEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGK 184
Query: 1654 TAVILTTHSMNEAQALCTRIGIMVGGQLR 1682
V+L TH + EA L TR+ ++ G R
Sbjct: 185 -QVLLITHDIEEALFLATRLVVLSPGPGR 212
|
Length = 259 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.4 bits (242), Expect = 4e-22
Identities = 63/201 (31%), Positives = 110/201 (54%), Gaps = 12/201 (5%)
Query: 589 NQILALLGHNGAGKSTTISMLVGLIP------PTTGDALVFGKNI-TADMDEIRKGLGVC 641
N I ++G +G+GKST + +L LI G L FGK+I D ++RK +G+
Sbjct: 36 NSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMV 95
Query: 642 PQYDILFPELTVREHLEMFAVLKGVKEEL-LESVVAEMVDEVGL----ADKVNIVVRALS 696
Q FP L++ +++ G+KE+ ++ +V E + +VGL D++N LS
Sbjct: 96 FQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLS 155
Query: 697 GGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEA 756
GG +++L++ AL KV+++DEPTS +D + + +LI ++K I++ +H+ +
Sbjct: 156 GGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQV 215
Query: 757 EELGDRIAIMANGSLKCCGSS 777
+ D +A + NG L GSS
Sbjct: 216 ARVADYVAFLYNGELVEWGSS 236
|
Length = 257 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 96.1 bits (239), Expect = 5e-22
Identities = 54/192 (28%), Positives = 113/192 (58%), Gaps = 5/192 (2%)
Query: 584 LTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQ 643
L + + +I+A++G +GAGKST ++++ G I P +G V ++ T + ++ + + Q
Sbjct: 19 LNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTG-LAPYQRPVSMLFQ 77
Query: 644 YDILFPELTVREHLEMFAVLKGVKEELLE-SVVAEMVDEVGLADKVNIVVRALSGGMKRK 702
+ LF LTVR+++ + + G+K + V + +VG+AD ++ + LSGG +++
Sbjct: 78 ENNLFAHLTVRQNIGL-GLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQR 136
Query: 703 LSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI--KKGRIILLTTHSMDEAEELG 760
++L L+ + +++LDEP S +DP L+K++ ++ R +L+ TH + +A +
Sbjct: 137 VALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIA 196
Query: 761 DRIAIMANGSLK 772
+IA+++ G +K
Sbjct: 197 SQIAVVSQGKIK 208
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.0 bits (241), Expect = 5e-22
Identities = 62/211 (29%), Positives = 111/211 (52%), Gaps = 14/211 (6%)
Query: 574 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISM---LVGLIPPT--TGDALVFGKNIT 628
G+ A+ + + + E ++A +G +G GKST + + + LIP T G+ + G+NI
Sbjct: 14 GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIY 73
Query: 629 A---DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK-EELLESVVAEMVDEVGL 684
+DE+RK +G+ Q FP+ ++ E++ + GVK + V E + L
Sbjct: 74 DKGVQVDELRKNVGMVFQRPNPFPK-SIFENVAYGLRVNGVKDNAFIRQRVEETLKGAAL 132
Query: 685 ADKVNIVVR----ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI 740
D+V ++ ALSGG +++L + A+ V+++DEP S +DP S +LI ++
Sbjct: 133 WDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL 192
Query: 741 KKGRIILLTTHSMDEAEELGDRIAIMANGSL 771
KK I++ TH+M +A + D+ A G +
Sbjct: 193 KKDYTIVIVTHNMQQAARVSDKTAFFYMGEM 223
|
Length = 250 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.4 bits (241), Expect = 6e-22
Identities = 68/236 (28%), Positives = 121/236 (51%), Gaps = 21/236 (8%)
Query: 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1522
+I ++NL K + G K + ++ SV+ GE +G +G+GK+T L ++G E P
Sbjct: 1 MMIEIKNLSKSF-GDKE-----VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP 54
Query: 1523 TDGTAFIFGKDI--RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYA--RIKGVAEYRM 1578
G+ + G+D+ + D RR +G Q L +LTV E++ A ++K +++
Sbjct: 55 DSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENV-TLAPVKVKKLSKAEA 113
Query: 1579 DDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIA----MIGDPPIVILDEPSTGMDP 1634
+ +E L + L A LSGG +++ VAIA M DP +++ DEP++ +DP
Sbjct: 114 REKALELLEKVGLADKADAYPAQLSGGQQQR--VAIARALAM--DPKVMLFDEPTSALDP 169
Query: 1635 IAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
+ +V+ L+ +G T +I+ TH M A+ + R+ M G++ G P+
Sbjct: 170 ELVGEVLDVMKDLA-EEGMT-MIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF 223
|
Length = 240 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 6e-22
Identities = 61/213 (28%), Positives = 109/213 (51%), Gaps = 9/213 (4%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+ I + K + G A+ + L++ + + + LLG +G GK+T + ++ GL T G
Sbjct: 5 LSIDNIRKRF----GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGT 60
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 679
G++IT + R G+ Q LFP LTV +++ +G+ + VAE++
Sbjct: 61 IYQGGRDITRLPPQKR-DYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELL 119
Query: 680 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP-YSMRLTWQLIK 738
D VGL LSGG +++++L AL +++LDEP S +D L + I+
Sbjct: 120 DLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTE-IR 178
Query: 739 KIKK--GRIILLTTHSMDEAEELGDRIAIMANG 769
++++ G ++ TH +EA + DRI +M +G
Sbjct: 179 QLQRRLGVTTIMVTHDQEEALSMADRIVVMNHG 211
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 6e-22
Identities = 59/229 (25%), Positives = 116/229 (50%), Gaps = 27/229 (11%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+++ L KVY A+ ++ L + + +A++G +GAGKST + + L+ P++G
Sbjct: 2 LEVENLSKVYP---NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGS 58
Query: 620 ALVFGKNIT----ADMDEIRKGLGVCPQYDILFPELTVREHLEMFAV-----LKGV---- 666
L+ G +IT + ++R+ +G+ Q+ L LTV E++ + + +
Sbjct: 59 ILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRF 118
Query: 667 ----KEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPT 722
KE L ++ + VGLADK LSGG ++++++ AL +++ DEP
Sbjct: 119 SEEDKERALSAL-----ERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPI 173
Query: 723 SGMDPYSMRLTWQLIKKI--KKGRIILLTTHSMDEAEELGDRIAIMANG 769
+ +DP + + +K+I + G +++ H +D A++ DRI + G
Sbjct: 174 ASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAG 222
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 7e-22
Identities = 64/208 (30%), Positives = 104/208 (50%), Gaps = 10/208 (4%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGK--NITADMDEIR 635
A+ S+ LT+Y +I ALLG NGAGKST + +L G+ PT G + N +
Sbjct: 20 ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQ 79
Query: 636 KGLGVCPQYDILFPELTVREHL-------EMFAVLKGVKEELLESVVAEMVDEVGLADKV 688
G+G+ Q + ELTV E+L + + + + A M+ VGL +
Sbjct: 80 LGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDL 139
Query: 689 NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK-GRIIL 747
+ V LS K+ L + L+ D+KV+I+DEPTS + + + ++ +++K G I+
Sbjct: 140 DEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIV 199
Query: 748 LTTHSMDEAEELGDRIAIMANGSLKCCG 775
+H + E + DR +M +GS C G
Sbjct: 200 YISHKLAEIRRICDRYTVMKDGSSVCSG 227
|
Length = 510 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 9e-22
Identities = 66/202 (32%), Positives = 112/202 (55%), Gaps = 16/202 (7%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 636
A++++ LT+ + +A++G G+GKST + +L+GL PT G L+ G +I D ++R+
Sbjct: 480 ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRR 539
Query: 637 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEV------GLADKVNI 690
+G PQ LF T+R+++ + A EE+L + V E GL ++
Sbjct: 540 NIGYVPQDPRLFYG-TLRDNIALGAPYAD-DEEILRAAELAGVTEFVRRHPDGLDMQIGE 597
Query: 691 VVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK---GRIIL 747
R+LSGG ++ ++L AL+ D +++LDEPTS MD R + ++K+ G+ ++
Sbjct: 598 RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMD---NRSEERFKDRLKRWLAGKTLV 654
Query: 748 LTTHSMDEAEELGDRIAIMANG 769
L TH +L DRI +M NG
Sbjct: 655 LVTHRT-SLLDLVDRIIVMDNG 675
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-21
Identities = 65/239 (27%), Positives = 118/239 (49%), Gaps = 29/239 (12%)
Query: 1468 RNLRKVYPGGKRS---DAKVAVHSLT---------FSVQAGECFGFLGTNGAGKTTTLSM 1515
R L ++P + + V +L+ F+V+AGE G G GAG+T
Sbjct: 245 RELEDLFPEPPEEGIGEPVLEVRNLSGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARA 304
Query: 1516 ISGEEYPTDGTAFIFGK--DIRSDPKAARRLIGYCP---QFDALLEYLTVQEHLEL---- 1566
+ G + G + GK IRS A + I Y P + + L+ +++ E++ L
Sbjct: 305 LFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLR 364
Query: 1567 -YARIKGVAEYRMDDVVMEKLVEFDL-LK--HAKKPSFTLSGGNKRKLSVAIAMIGDPPI 1622
++R + + + E+ + L +K ++P TLSGGN++K+ +A + DP +
Sbjct: 365 RFSRRGLIDRRKERALA-ERYIR-RLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKV 422
Query: 1623 VILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
+ILDEP+ G+D AK ++ +I L+ +GK A+++ + + E L RI +M G++
Sbjct: 423 LILDEPTRGIDVGAKAEIYRLIRELA-AEGK-AILMISSELPELLGLSDRILVMREGRI 479
|
Length = 500 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 1e-21
Identities = 57/189 (30%), Positives = 101/189 (53%), Gaps = 2/189 (1%)
Query: 1502 LGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQ 1561
LG +G GKTT L +++G E P G+ + G+D+ + P R I Q AL ++TV+
Sbjct: 2 LGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP-PHLRHINMVFQSYALFPHMTVE 60
Query: 1562 EHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1621
E++ +++ V + V+E L L + A + LSGG ++++++A A++ P
Sbjct: 61 ENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPK 120
Query: 1622 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
I++LDEP + +D + M + + + G T + TH EA + RI IM G++
Sbjct: 121 ILLLDEPLSALDKKLRDQMQLELKTIQEQLGIT-FVFVTHDQEEAMTMSDRIAIMRKGKI 179
Query: 1682 RCIGSPQHL 1690
IG+P+ +
Sbjct: 180 AQIGTPEEI 188
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 1e-21
Identities = 67/226 (29%), Positives = 114/226 (50%), Gaps = 10/226 (4%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1523
++ LR + K + D K + +L ++ GE LG +G GKTT L +I+G E P
Sbjct: 14 LVELRGISKSF------DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD 67
Query: 1524 DGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVM 1583
G + G+DI P A R + Q AL ++TV E++ R++ + VM
Sbjct: 68 SGRIMLDGQDITHVP-AENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVM 126
Query: 1584 EKLVEFDLLKHA-KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1642
E L L + A +KP LSGG ++++++A A++ P +++LDE + +D ++ M
Sbjct: 127 EALRMVQLEEFAQRKPH-QLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQN 185
Query: 1643 VISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1688
+ L + G T + TH EA + RI +M G++ G+P+
Sbjct: 186 ELKALQRKLGIT-FVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPR 230
|
Length = 375 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 94.9 bits (236), Expect = 2e-21
Identities = 64/217 (29%), Positives = 115/217 (52%), Gaps = 10/217 (4%)
Query: 1478 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD 1537
KR + A+ + V G LG +G+GK+T L +I+G E P G + G+D +
Sbjct: 8 KRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDA-TR 66
Query: 1538 PKAARRLIGYCPQFDALLEYLTVQEH----LELYARIKGVAEYRMDDVVMEKLVEFDLLK 1593
A R IG+ Q AL ++LTV+++ LE+ K + R+++++ +LV+ + L
Sbjct: 67 VHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELL--ELVQLEGLG 124
Query: 1594 HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGK 1653
+ P+ LSGG ++++++A A+ +P +++LDEP +D ++ + + +L
Sbjct: 125 D-RYPN-QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHV 182
Query: 1654 TAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
T V TH EA + RI +M G++ IGSP +
Sbjct: 183 TTV-FVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 98.1 bits (244), Expect = 2e-21
Identities = 59/214 (27%), Positives = 101/214 (47%), Gaps = 3/214 (1%)
Query: 1479 RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP--TDGTAFIFGKDIRS 1536
A + L+ ++AGE +G +G GKTT L I+G G I +D+
Sbjct: 14 AYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTH 73
Query: 1537 DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAK 1596
P R L Q AL +L V++++ R + + + + + V + L L A
Sbjct: 74 APPHKRGL-ALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAA 132
Query: 1597 KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAV 1656
LSGG ++++++A A+ +P +++LDEP + +D + M E I+ L + +
Sbjct: 133 HLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTI 192
Query: 1657 ILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
+ TH ++A L + GIM G+L G PQ L
Sbjct: 193 LCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 2e-21
Identities = 57/224 (25%), Positives = 111/224 (49%), Gaps = 23/224 (10%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDE---- 633
A++ + + + A++G G+GKST I + L+ PTTG V IT +
Sbjct: 22 AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81
Query: 634 -IRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKE-----ELLESVVAEMVDEVGLADK 687
+RK +G+ Q FPE + E ++ G K + +++ ++ ++G +
Sbjct: 82 PVRKRIGMVFQ----FPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSR- 136
Query: 688 VNIVVRA---LSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI--KK 742
+++ ++ +SGG RK+++ L + +++LDEPT+G+DP S R +L+K + +
Sbjct: 137 -DVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDE 195
Query: 743 GRIILLTTHSMDEAEELGDRIAIMANGSL--KCCGSSLFLKHQY 784
+ I+L +H M+E D + +M GS+ + LF +
Sbjct: 196 NKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKKK 239
|
Length = 286 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 2e-21
Identities = 57/201 (28%), Positives = 108/201 (53%), Gaps = 11/201 (5%)
Query: 582 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVC 641
LT+ +I+A+LG +GAGKST ++++ G P +G+ L+ G + TA + + +
Sbjct: 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTA-SPPAERPVSML 76
Query: 642 PQYDILFPELTVREHLEM----FAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSG 697
Q + LF LTV +++ + L + E +E+ A+ VGLA + + LSG
Sbjct: 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQ----VGLAGFLKRLPGELSG 132
Query: 698 GMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI--KKGRIILLTTHSMDE 755
G +++++L L+ + +++LDEP S +DP L+ ++ ++ +L+ TH ++
Sbjct: 133 GQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPED 192
Query: 756 AEELGDRIAIMANGSLKCCGS 776
A + DR+ + NG + GS
Sbjct: 193 AARIADRVVFLDNGRIAAQGS 213
|
Length = 231 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.4 bits (237), Expect = 2e-21
Identities = 66/225 (29%), Positives = 122/225 (54%), Gaps = 18/225 (8%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIP-- 614
I+I Y K+ AV ++ + +++NQI A++G +G GK+T +I+ + IP
Sbjct: 4 IEIENFSAYYGEKK----AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGF 59
Query: 615 PTTGDALVFGKNI---TADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK-EEL 670
G G++I D+ E RK +G+ Q FP +++ +++ + GVK +
Sbjct: 60 RVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHK 118
Query: 671 LESVVAEMVDEVGLADKV----NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 726
L+ +V E + + L D+V N LSGG +++L + AL + +V++LDEPTS +D
Sbjct: 119 LDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALD 178
Query: 727 PYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 771
P + + +L++++ + I++ TH++ +A + D IA M G L
Sbjct: 179 PIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGEL 223
|
Length = 250 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 2e-21
Identities = 52/181 (28%), Positives = 79/181 (43%), Gaps = 6/181 (3%)
Query: 1481 DAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKA 1540
++ L+F++ AGE G NG GKTT L +++G P G G +
Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDE 70
Query: 1541 ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSF 1600
R I Y L L+ E+L +A I G A + + L L P+
Sbjct: 71 PHRNILYLGHLPGLKPELSALENLHFWAAIHGGA----QRTIEDALAAVGLTGFEDLPAA 126
Query: 1601 TLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTT 1660
LS G +R+L++A + P+ ILDEP+T +D + ++ R G V+LTT
Sbjct: 127 QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGG--IVLLTT 184
Query: 1661 H 1661
H
Sbjct: 185 H 185
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.2 bits (238), Expect = 2e-21
Identities = 69/231 (29%), Positives = 113/231 (48%), Gaps = 23/231 (9%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
++ R L + G ++ + LTL +++A+LG NGAGKST + L G + P +G+
Sbjct: 3 LEARNLSV----RLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGE 58
Query: 620 ALVFGKNITADMD--EIRKGLGVCPQYDIL-FPELTVREHLEM-FAVLKGVKEELLESVV 675
+ G+ + AD E+ + V PQ+ L FP TV E + M A + E +++V
Sbjct: 59 VRLNGRPL-ADWSPAELARRRAVLPQHSSLSFP-FTVEEVVAMGRAPHGLSRAE-DDALV 115
Query: 676 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALI------GDSKVVILDEPTSGMDPY- 728
A + +V LA LSGG ++++ L L G + ++LDEPTS +D
Sbjct: 116 AAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAH 175
Query: 729 ---SMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
+RL QL + I++L H ++ A DRI ++ G L G+
Sbjct: 176 QHHVLRLARQLAHERGLAVIVVL--HDLNLAARYADRIVLLHQGRLVADGT 224
|
Length = 258 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 3e-21
Identities = 72/235 (30%), Positives = 117/235 (49%), Gaps = 20/235 (8%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
I + NL +Y G K A+ ++ ++ GE G +G G+GK+T + ++G PT
Sbjct: 3 IKIENLTHIYMEGT-PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTS 61
Query: 1525 GTAFIFGKDIRSDPKAA----RRLIGYCPQFDALLEYL----TVQEHLELYARIKGVAEY 1576
G I G DI +D K R+ +G Q+ EY T+++ + G++E
Sbjct: 62 GKIIIDGVDI-TDKKVKLSDIRKKVGLVFQYP---EYQLFEETIEKDIAFGPINLGLSEE 117
Query: 1577 RMDDVVME--KLVEFDLLKHAKKPSFTLSGGNKRKLSVA--IAMIGDPPIVILDEPSTGM 1632
+++ V +V D + K F LSGG KR++++A +AM +P I+ILDEP+ G+
Sbjct: 118 EIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM--EPKILILDEPTAGL 175
Query: 1633 DPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1687
DP + + I L T +IL +HSM + L RI +M G+ G+P
Sbjct: 176 DPKGRDEILNKIKELHKEYNMT-IILVSHSMEDVAKLADRIIVMNKGKCELQGTP 229
|
Length = 287 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.8 bits (242), Expect = 3e-21
Identities = 74/241 (30%), Positives = 130/241 (53%), Gaps = 16/241 (6%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
I L+N+ KV+P G R A+++++ + AGE FG +G +GAGK+T + I+ E PT
Sbjct: 2 IELKNISKVFPQGGR--TIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTS 59
Query: 1525 GTAFIFGKDI----RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDD 1580
G + G+D+ + + ARR IG Q LL TV +++ L + G + +
Sbjct: 60 GRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKA 119
Query: 1581 VVMEKLVEFDLLKHAKK-PSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF 1639
V E L L A + P+ LSGG K+++++A A+ +P +++ DE ++ +DP R
Sbjct: 120 RVTELLELVGLSDKADRYPA-QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS 178
Query: 1640 MWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS-------PQHLKT 1692
+ E++ ++ G T ++L TH M+ + +C R+ ++ G+L G+ P+H T
Sbjct: 179 ILELLKDINRELGLT-IVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPKHPLT 237
Query: 1693 R 1693
R
Sbjct: 238 R 238
|
Length = 343 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 3e-21
Identities = 65/233 (27%), Positives = 113/233 (48%), Gaps = 10/233 (4%)
Query: 1461 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE 1520
+ +I + N+ YP + A+ +++F + GE LG NG+GK+T +++G
Sbjct: 4 KSVMIKVENVSFSYPNSE----NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLL 59
Query: 1521 YPTDGTAFIFGKDIRSDP-KAARRLIGYCPQF-DALLEYLTVQEHLELYARIKGVAEYRM 1578
P G I G I + K R+ IG Q D TV++ + K V +M
Sbjct: 60 KPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKM 119
Query: 1579 DDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGM-DPIAK 1637
D++ + + + + K LSGG K+++++A + +P I+I DE ST M DP K
Sbjct: 120 KDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDE-STSMLDPKGK 178
Query: 1638 RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
R + +++ L + K +I TH M+EA L ++ + G+L G P+ +
Sbjct: 179 REIKKIMVDLR-KTRKKTLISITHDMDEA-ILADKVIVFSEGKLIAQGKPKEI 229
|
Length = 271 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 3e-21
Identities = 59/194 (30%), Positives = 95/194 (48%), Gaps = 8/194 (4%)
Query: 570 ATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA 629
A RG L TL + L + G NG GK+T + +L GL+ P +G+ G +
Sbjct: 7 ACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAE 66
Query: 630 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVN 689
DE + + L PEL+ E+L +A + G + +E + + VGL +
Sbjct: 67 QRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIE----DALAAVGLTGFED 122
Query: 690 IVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK-IKKGRIILL 748
+ LS G +R+L+L + + + ILDEPT+ +D + L L++ + +G I+LL
Sbjct: 123 LPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLL 182
Query: 749 TTH---SMDEAEEL 759
TTH + EA EL
Sbjct: 183 TTHQDLGLVEAREL 196
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 3e-21
Identities = 54/184 (29%), Positives = 85/184 (46%), Gaps = 12/184 (6%)
Query: 573 RGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMD 632
RG + L TL + L + G NGAGK+T + +L GL+ P G+ G+ I +
Sbjct: 12 RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRE 71
Query: 633 EIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDE----VGLADKV 688
+ L + ELT E+L + + S A + E VGLA
Sbjct: 72 SYHQALLYLGHQPGIKTELTALENLHFW-------QRFHGSGNAATIWEALAQVGLAGLE 124
Query: 689 NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIK-KIKKGRIIL 747
++ V LS G +R+++L + + + ILDEP + +D + L L+ +G I+L
Sbjct: 125 DLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVL 184
Query: 748 LTTH 751
LTTH
Sbjct: 185 LTTH 188
|
Length = 209 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 4e-21
Identities = 65/222 (29%), Positives = 111/222 (50%), Gaps = 18/222 (8%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I+I + K + A++ + L + +++ALLG +GAGKST + ++ GL P G
Sbjct: 3 IRINNVKKRFGAFG----ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGR 58
Query: 620 ALVFGKNITADMDEIR---KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESV-- 674
+ + D+ + + +G Q+ LFP +TV +++ F LK KE E+
Sbjct: 59 -IRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIA-FG-LKVRKERPSEAEIR 115
Query: 675 --VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMR- 731
V E++ V L + LSGG +++++L AL + KV++LDEP +D +R
Sbjct: 116 ARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDA-KVRK 174
Query: 732 -LTWQLIKKIKK-GRIILLTTHSMDEAEELGDRIAIMANGSL 771
L L K + G + TH +EA EL DR+ ++ G +
Sbjct: 175 ELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRI 216
|
Length = 345 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 5e-21
Identities = 59/218 (27%), Positives = 113/218 (51%), Gaps = 10/218 (4%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I+ + K Y R A+ + + + + + L G +GAGKST + ++ G PT G
Sbjct: 2 IRFENVSKAYPGGRE---ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGK 58
Query: 620 ALVFGKNIT----ADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVV 675
LV G +++ ++ +R+ +GV Q L P+ TV E++ + + G + V
Sbjct: 59 ILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRV 118
Query: 676 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP-YSMRLTW 734
+E++D VGL K + LSGG ++++++ A++ V++ DEPT +DP S +
Sbjct: 119 SEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIM- 177
Query: 735 QLIKKI-KKGRIILLTTHSMDEAEELGDRIAIMANGSL 771
+L ++I + G +L+ TH ++ + R+ + +G L
Sbjct: 178 RLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRL 215
|
Length = 223 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 7e-21
Identities = 70/227 (30%), Positives = 127/227 (55%), Gaps = 22/227 (9%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIP-- 614
I ++ L Y G+ A+ + L + ENQ+ AL+G +G GKST T++ + LIP
Sbjct: 4 ISVKDLDLFY----GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSV 59
Query: 615 PTTGDALVFGKNITA---DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKE-EL 670
G+ L+ G++I D++++RK +G+ Q FP +++ +++ G+K+ +
Sbjct: 60 KIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKK 118
Query: 671 LESVV------AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSG 724
L+ +V A + DEV D++ LSGG +++L + AL + +V+++DEPTS
Sbjct: 119 LDEIVEKSLKGAALWDEV--KDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSA 176
Query: 725 MDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 771
+DP S +LI+++KK I++ TH+M +A + D+ A NG +
Sbjct: 177 LDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEI 223
|
Length = 250 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.4 bits (234), Expect = 8e-21
Identities = 75/233 (32%), Positives = 120/233 (51%), Gaps = 32/233 (13%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPT-----TGDALVFGKNITADMD 632
A+ + L + + AL+GH G+GKST + L GL+ PT GD +V + ++
Sbjct: 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80
Query: 633 EIRKGLGVCPQYDILFPELTVREHLEMFAVLK---------GVKEELLESVVAEMVDEVG 683
+RK +GV Q FPE + E VLK G+ +E E + AE ++ VG
Sbjct: 81 PVRKKVGVVFQ----FPESQLFEE----TVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVG 132
Query: 684 LADKV-NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-K 741
LAD+ LSGG R++++ L + +V++LDEPT+G+DP + QL + I +
Sbjct: 133 LADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ 192
Query: 742 KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSL-------FLK-HQYGV 786
G+ ++L TH MD+ + D + ++ G + CG+ FLK H+ GV
Sbjct: 193 SGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGV 245
|
Length = 288 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.5 bits (235), Expect = 8e-21
Identities = 61/229 (26%), Positives = 117/229 (51%), Gaps = 25/229 (10%)
Query: 560 IQIRKLHKVYA-----TKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP 614
I+ + +Y+ K+G ++++ L E +AL+GH G+GKST + L+
Sbjct: 3 IKFENVDYIYSPGTPMEKKG----LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK 58
Query: 615 PTTGDALVFGKNITAD-----MDEIRKGLGVCPQYDILFPEL-----TVREHLEMFAVLK 664
P++G + G +IT + + ++RK + + Q FPE TV + +E
Sbjct: 59 PSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQ----FPEAQLFENTVLKDVEFGPKNF 114
Query: 665 GVKEELLESVVAEMVDEVGLADKV-NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTS 723
G E+ + + + +VGL++ + + LSGG R++++ + + +++ LDEP +
Sbjct: 115 GFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAA 174
Query: 724 GMDPYSMRLTWQLIKKIKK-GRIILLTTHSMDEAEELGDRIAIMANGSL 771
G+DP + QL K +K G ++L TH+MD+ E D + ++ +G L
Sbjct: 175 GLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKL 223
|
Length = 287 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.3 bits (232), Expect = 9e-21
Identities = 61/200 (30%), Positives = 106/200 (53%), Gaps = 18/200 (9%)
Query: 1480 SDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DP 1538
S K + ++ + G + +G +GAGK+T + +I+ PT+G+ I G DI++ D
Sbjct: 13 SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDV 72
Query: 1539 KAARRLIGYCPQFDALLEYLTVQEHLELYARIKGV----AEYRMDDVVMEKLVEFDLLKH 1594
RR IG Q L E TV++++E +KG EY + V + K ++
Sbjct: 73 IDLRRKIGMVFQQPHLFEG-TVKDNIEYGPMLKGEKNVDVEYYLSIVGLNK-------EY 124
Query: 1595 AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKT 1654
A + LSGG +++S+A + +P +++LDEP++ +DP + + E+I +L + T
Sbjct: 125 ATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLT 184
Query: 1655 AVILTTHSMNEAQALCTRIG 1674
VI TH+M +A+ RIG
Sbjct: 185 -VIWITHNMEQAK----RIG 199
|
Length = 241 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 9e-21
Identities = 47/198 (23%), Positives = 109/198 (55%), Gaps = 10/198 (5%)
Query: 1492 SVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQF 1551
+V GE +G +GAGK+T L++I+G P G+ + + +R + Q
Sbjct: 20 NVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA-PYQRPVSMLFQE 78
Query: 1552 DALLEYLTVQEHLEL----YARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNK 1607
+ L +LTV++++ L ++ + ++ D + + D L + P LSGG +
Sbjct: 79 NNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIA-DYL--DRLPE-QLSGGQR 134
Query: 1608 RKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQ 1667
+++++A ++ PI++LDEP + +DP+ + M ++ +L + + +T +++ TH +++A+
Sbjct: 135 QRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRT-LLMVTHHLSDAR 193
Query: 1668 ALCTRIGIMVGGQLRCIG 1685
A+ ++I ++ G+++ +
Sbjct: 194 AIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 95.8 bits (238), Expect = 9e-21
Identities = 56/204 (27%), Positives = 101/204 (49%), Gaps = 6/204 (2%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP--TTGDALVFGKNITADMDEIRK 636
++ L L + ++LAL+G +G GK+T + + G + TG + +++T ++
Sbjct: 21 LDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLT-HAPPHKR 79
Query: 637 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALS 696
GL + Q LFP L V +++ + + + + VA+ + VGL D + LS
Sbjct: 80 GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLS 139
Query: 697 GGMKRKLSLGIALIGDSKVVILDEPTSGMDP---YSMRLTWQLIKKIKKGRIILLTTHSM 753
GGM++++++ A+ + V++LDEP S +D +MR + + IL TH
Sbjct: 140 GGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ 199
Query: 754 DEAEELGDRIAIMANGSLKCCGSS 777
D+A L D+ IM +G L G
Sbjct: 200 DDALTLADKAGIMKDGRLAAHGEP 223
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 1e-20
Identities = 64/207 (30%), Positives = 98/207 (47%), Gaps = 13/207 (6%)
Query: 1487 HSLTFSVQA-GECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFG-------KDIRSDP 1538
+L E G G +GAGK+T L I+G E P GT + G K I P
Sbjct: 13 FTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPP 72
Query: 1539 KAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKP 1598
+ +R IG Q AL +L V+E+L + K E R V E L L +
Sbjct: 73 Q--QRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDR--ISVDELLDLLGLDHLLNRY 128
Query: 1599 SFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVIL 1658
LSGG K+++++A A+ P +++LDEP + +D + + + ++ VI
Sbjct: 129 PAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIP-VIF 187
Query: 1659 TTHSMNEAQALCTRIGIMVGGQLRCIG 1685
TH ++EA+ L RI +M G+L+ IG
Sbjct: 188 VTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 1e-20
Identities = 59/219 (26%), Positives = 110/219 (50%), Gaps = 9/219 (4%)
Query: 1468 RNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTA 1527
NL K Y G +H+++FS+ GE +G++G+GK+T L ++ G + PT G
Sbjct: 9 DNLCKRYQEGSVQTD--VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDV 66
Query: 1528 FIFGKDIRSDPKAAR-----RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV 1582
G+ + AA+ + +G+ QF LL T E++ + I ++
Sbjct: 67 IFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRA 126
Query: 1583 MEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1642
+E L L A LSGG ++++++A A++ +P +V+ DEP+ +D +++
Sbjct: 127 LEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQ 186
Query: 1643 VISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
++ L+ QG TA ++ TH + A+ + +R M G+L
Sbjct: 187 LLGELNRLQG-TAFLVVTHDLQLAKRM-SRQLEMRDGRL 223
|
Length = 233 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 1e-20
Identities = 60/222 (27%), Positives = 111/222 (50%), Gaps = 14/222 (6%)
Query: 1474 YPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKD 1533
Y G K A+ + ++++GE LG +G GKTT L++I+G G+ + GK
Sbjct: 11 YGG------KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKP 64
Query: 1534 IRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK 1593
+ P A R G Q + LL + VQ+++ ++ GV + + ++ + L + L
Sbjct: 65 V-EGPGAER---GVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEG 120
Query: 1594 HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGK 1653
K+ + LSGG ++++ +A A+ +P +++LDEP +D + M ++ +L GK
Sbjct: 121 AEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGK 180
Query: 1654 TAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 1695
V+L TH + EA + T + ++ G R + + L F
Sbjct: 181 Q-VLLITHDIEEAVFMATELVLLSPGPGRVV---ERLPLNFA 218
|
Length = 255 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.1 bits (231), Expect = 1e-20
Identities = 64/207 (30%), Positives = 113/207 (54%), Gaps = 14/207 (6%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIP--PTTGDALVFGKNITA--- 629
A+N + L +YEN+I AL+G +G GKST ++ + LI G+ L+ GKNI
Sbjct: 19 ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDV 78
Query: 630 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEE-LLESVVAEMVDEVGLADKV 688
D+ E+RK +G+ Q FP +++ +++ + G+K++ L+ +V + + L D+V
Sbjct: 79 DVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEV 137
Query: 689 NIVVR----ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGR 744
++ LSGG +++L + + V+++DEPTS +DP S L+ ++KK
Sbjct: 138 KDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEY 197
Query: 745 IILLTTHSMDEAEELGDRIAIMANGSL 771
I++ TH+M +A + D A G L
Sbjct: 198 TIVIVTHNMQQASRVSDYTAFFLMGDL 224
|
Length = 251 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 2e-20
Identities = 60/225 (26%), Positives = 114/225 (50%), Gaps = 11/225 (4%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1523
++ NL K Y GK D +V + ++ S+ GE +G++G+GK+T L ++ G + PT
Sbjct: 1 LLKCENLGKRYQEGKL-DTRV-LKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT 58
Query: 1524 DGTAFIFGKDIR--SDPKAAR---RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRM 1578
G G+ + S + A+ + +G+ QF LL T E++ + I +
Sbjct: 59 SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEA 118
Query: 1579 DDVVMEKLVEFDLLKHA-KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK 1637
+ E L + L +PS LSGG ++++++A A++ P +V+ DEP+ +D
Sbjct: 119 KERAYEMLEKVGLEHRINHRPS-ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNA 177
Query: 1638 RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLR 1682
+ +++++ L+ T+ ++ TH + A+ L R+ M GQL
Sbjct: 178 KIIFDLMLELNRELN-TSFLVVTHDLELAKKL-DRVLEMKDGQLF 220
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 2e-20
Identities = 60/213 (28%), Positives = 109/213 (51%), Gaps = 9/213 (4%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+++R + K + K +++L LT+ + L LLG +G GK+T + ++ G P +G
Sbjct: 15 VELRGISKSFDGK----EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGR 70
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 679
++ G++IT E R V Y LFP +TV E++ ++ + V E +
Sbjct: 71 IMLDGQDITHVPAENRHVNTVFQSY-ALFPHMTVFENVAFGLRMQKTPAAEITPRVMEAL 129
Query: 680 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQL-IK 738
V L + LSGG ++++++ A++ KV++LDE S +D Y +R Q +K
Sbjct: 130 RMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD-YKLRKQMQNELK 188
Query: 739 KIKK--GRIILLTTHSMDEAEELGDRIAIMANG 769
+++ G + TH +EA + DRI +M +G
Sbjct: 189 ALQRKLGITFVFVTHDQEEALTMSDRIVVMRDG 221
|
Length = 375 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.5 bits (231), Expect = 2e-20
Identities = 60/224 (26%), Positives = 101/224 (45%), Gaps = 30/224 (13%)
Query: 1483 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKA-- 1540
+ + ++ +++ GE LG NGAGK+T L +SGE P G + G+ + A
Sbjct: 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAEL 74
Query: 1541 ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSF 1600
ARR PQ +L TV+E + + G++ D +V L + DL A +
Sbjct: 75 ARRR-AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYP 133
Query: 1601 TLSGGNKRKLSVAIAMI--------GDPPIVILDEPSTGMDP--------IAKRFMWEVI 1644
LSGG +++ V +A + G P ++LDEP++ +D +A++
Sbjct: 134 QLSGGEQQR--VQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQL----- 186
Query: 1645 SRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1688
+ AVI+ H +N A RI ++ G+L G+P
Sbjct: 187 ----AHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPA 226
|
Length = 258 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 2e-20
Identities = 68/227 (29%), Positives = 109/227 (48%), Gaps = 15/227 (6%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1523
+I +RNL Y G S K + + + GE G +G+GKTT L++I G
Sbjct: 1 VISIRNLNHYY--GHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ 58
Query: 1524 DGTAFIFGKDIRSDPK----AARRLIGYCPQFDALLEYLT----VQEHLELYARIKGVAE 1575
+G+ + G+++ + RR IGY Q LL +LT VQ LEL + E
Sbjct: 59 EGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNL-SYQE 117
Query: 1576 YRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPI 1635
R M + V L H LSGG K+++++A A++ P +V+ DEP+ +D
Sbjct: 118 ARERARAMLEAV--GLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSK 175
Query: 1636 AKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLR 1682
+ R + E++ +L+ QG +++ TH N + RI M G+L
Sbjct: 176 SGRDVVELMQKLAREQG-CTILIVTHD-NRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.0 bits (231), Expect = 2e-20
Identities = 67/222 (30%), Positives = 122/222 (54%), Gaps = 23/222 (10%)
Query: 568 VYATKR-----GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISML---VGLIPP--TT 617
V+ T+ G A+ ++ L ++EN++ A++G +G GKST I L V L+P TT
Sbjct: 24 VFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTT 83
Query: 618 GDALVFGKNITAD---MDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEE-LLES 673
G L +NI ++E+R +G+ Q FP+ ++ +++ + G+K++ L+
Sbjct: 84 GKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHGIKDKKTLDE 142
Query: 674 VV------AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP 727
+V A + DE L D+++ LSGG +++L + L + V+++DEPTS +DP
Sbjct: 143 IVEKSLRGAAIWDE--LKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDP 200
Query: 728 YSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANG 769
S +L++++KK I++ TH+M +A + D+ A NG
Sbjct: 201 ISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNG 242
|
Length = 271 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 2e-20
Identities = 73/241 (30%), Positives = 126/241 (52%), Gaps = 22/241 (9%)
Query: 544 EAISLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKS 603
++ +Q G+ +++R + Y ++ A+ + LTL + + +A+LG +G+GKS
Sbjct: 321 PEVTFPDEQTATTGQALELRNVSFTYPGQQTK--ALKNFNLTLAQGEKVAILGRSGSGKS 378
Query: 604 TTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGLGVCPQYDILFPELTVREHL----- 657
T + +L G P G + G I + D +R+ + V Q LF T+R++L
Sbjct: 379 TLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSG-TLRDNLRLANP 437
Query: 658 -----EMFAVLKGVK-EELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIG 711
E++A L+ V E+LLES GL + R LSGG +R+L+L AL+
Sbjct: 438 DASDEELWAALQQVGLEKLLES------APDGLNTWLGEGGRRLSGGERRRLALARALLH 491
Query: 712 DSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 771
D+ + +LDEPT G+DP + R L+ + +G+ +L+ TH + E + DRI ++ NG +
Sbjct: 492 DAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERM-DRIIVLDNGKI 550
Query: 772 K 772
Sbjct: 551 I 551
|
Length = 573 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 2e-20
Identities = 52/194 (26%), Positives = 99/194 (51%), Gaps = 11/194 (5%)
Query: 582 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVC 641
LT + +I A++G +G+GKST ++++ G P +G L+ G ++TA + + +
Sbjct: 17 FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTA-APPADRPVSML 75
Query: 642 PQYDILFPELTVREHLEMFAV----LKGVKEELLESVVAEMVDEVGLADKVNIVVRALSG 697
Q + LF LTV +++ + L + +E +A + GLA + LSG
Sbjct: 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARV----GLAGLEKRLPGELSG 131
Query: 698 GMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI--KKGRIILLTTHSMDE 755
G +++++L L+ D V++LDEP + +DP L+ + + +L+ TH ++
Sbjct: 132 GERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPED 191
Query: 756 AEELGDRIAIMANG 769
A+ L R+ + NG
Sbjct: 192 AKRLAQRVVFLDNG 205
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 2e-20
Identities = 56/197 (28%), Positives = 99/197 (50%), Gaps = 12/197 (6%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT-ADMDEIRK 636
A+ + T+ + +AL+G +GAGKST +++L+G + PT G V G + AD D R
Sbjct: 337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRD 396
Query: 637 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVV-----AEMVDEV--GLADKVN 689
+ PQ+ LF T+ E++ + + + + E V + GL +
Sbjct: 397 QIAWVPQHPFLFAG-TIAENIRLAR--PDASDAEIREALERAGLDEFVAALPQGLDTPIG 453
Query: 690 IVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLT 749
LSGG ++L+L A + D+ +++LDEPT+ +D + + ++ + +GR +LL
Sbjct: 454 EGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLV 513
Query: 750 THSMDEAEELGDRIAIM 766
TH L DRI ++
Sbjct: 514 THR-LALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.0 bits (228), Expect = 3e-20
Identities = 70/227 (30%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIPPT 616
I +H Y A+ + L +N+I AL+G +G GKST T++ + LIP
Sbjct: 6 ITSSDVHLFYGKFE----ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGV 61
Query: 617 T--GDALVFGKNITA---DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKE-EL 670
T G+ + G+NI A D+ ++RK +G+ Q FP ++ E++ L GVK+ +
Sbjct: 62 TITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAV 120
Query: 671 LESVV------AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSG 724
L+ V A + DEV D ++ +LSGG ++++ + L V++LDEPTS
Sbjct: 121 LDEAVETSLKQAAIWDEV--KDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSA 178
Query: 725 MDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 771
+DP S ++ +++ I+L THSM +A + D+ A G+L
Sbjct: 179 LDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNL 225
|
Length = 252 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 3e-20
Identities = 71/245 (28%), Positives = 117/245 (47%), Gaps = 29/245 (11%)
Query: 1482 AKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIR--SDPK 1539
K ++ L+ S+ G+ +G NG GK+T L + P GT F+ K I S +
Sbjct: 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQ 73
Query: 1540 AARRLIGYCPQFDALLEYLTVQE--------HLELYARIKGVAEYRMDDVVMEK--LVEF 1589
ARRL PQ E +TV+E L L+ R+ R+ + ME+ +
Sbjct: 74 LARRL-ALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARV-NQAMEQTRINHL 131
Query: 1590 DLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLST 1649
A + LSGG +++ +A+ + D P+V+LDEP+T +D + + ++ L+T
Sbjct: 132 -----ADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT 186
Query: 1650 RQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH------LKTRFGNFLELEVK 1703
QGKT V+ H +N+A C + ++ G + G+P+ L+T F +E E+
Sbjct: 187 -QGKT-VVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTPGLLRTVFD--VEAEIH 242
Query: 1704 PTEVS 1708
P VS
Sbjct: 243 PEPVS 247
|
Length = 255 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 5e-20
Identities = 63/223 (28%), Positives = 113/223 (50%), Gaps = 14/223 (6%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I IR L+ Y + + L + +I+ L G +G+GK+T ++++ GL G
Sbjct: 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGS 61
Query: 620 ALVFGKNIT----ADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLK-GVKEELLESV 674
V G+ + ++ ++R+ +G Q L LT R++++M L+ + +
Sbjct: 62 LKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARER 121
Query: 675 VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTW 734
M++ VGL D ++ LSGG K+++++ AL+ K+V+ DEPT+ +D S R
Sbjct: 122 ARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVV 181
Query: 735 QLIKKIKK--GRIILLTTHS---MDEAEELGDRIAIMANGSLK 772
+L++K+ + G IL+ TH +D A DRI M +G L
Sbjct: 182 ELMQKLAREQGCTILIVTHDNRILDVA----DRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 5e-20
Identities = 66/232 (28%), Positives = 113/232 (48%), Gaps = 28/232 (12%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
++ L Y TKR +N L L+L +I AL+G NG GKST + L+ P +G
Sbjct: 3 LRTENLTVGYGTKR----ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGT 58
Query: 620 ALVFGKNITADMD-EIRKGLGVCPQYDILFPE-LTVRE--------HLEMFAVLKGVKEE 669
+ K I+ ++ + L + PQ+ L PE +TVRE L ++ L
Sbjct: 59 VFLGDKPISMLSSRQLARRLALLPQH-HLTPEGITVRELVAYGRSPWLSLWGRLSAEDNA 117
Query: 670 LLESVVAEM-VDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPY 728
+ + + ++ LAD+ + LSGG +++ L + L D+ VV+LDEPT+ +D
Sbjct: 118 RVNQAMEQTRINH--LADR---RLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDIN 172
Query: 729 S----MRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
MRL +L +G+ ++ H +++A D + ++ANG + G+
Sbjct: 173 HQVELMRLMREL---NTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGT 221
|
Length = 255 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 5e-20
Identities = 42/204 (20%), Positives = 78/204 (38%), Gaps = 24/204 (11%)
Query: 1190 VSIIISIAFSFIPASFAVAIVKEREVKAKQQQLISGVSVLSYWTSTYIWDFISFLFPSSC 1249
+ +++ + A++IV+E+E + K++ L+SGVS L Y + D + L
Sbjct: 98 LGLLLFLLILIGALIIALSIVEEKESRIKERLLVSGVSPLKYLLGKILGDLLVGLIQ--- 154
Query: 1250 AIILFYIFGLDQFVGRGCLLPTVLIFLGYGLAIASSTYCLTFFFSDHTMAQNVVLLVHFF 1309
+++ + + G LL +L+FL YGLA + L F + A V+ ++
Sbjct: 155 -LLIILLLLFGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNSEAAILVISILILL 213
Query: 1310 TGLILMVISFIMGLLEATRSANSLLKNFFRLSPGFCFADGLASLALLRQGMKDKTSDGVF 1369
+ + + S L+ F + P F DGL +
Sbjct: 214 LSGFFGGLFPLPNM-------PSFLQWIFSIIPFFAPIDGLLRIIY------------GD 254
Query: 1370 DWNVTSASICYLGCESICYFLLTL 1393
+ S+ L + LL L
Sbjct: 255 LAEILL-SLIILLLFGVVLLLLAL 277
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 9e-20
Identities = 45/197 (22%), Positives = 90/197 (45%), Gaps = 12/197 (6%)
Query: 572 KRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TAD 630
+R + L + + A++G NGAGK+T +S+L G PP++GD + G+ +
Sbjct: 40 RRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGE 99
Query: 631 MD-EIRKGLGVC-PQYDILFP-ELTVREHL-----EMFAVLKGVKEELLESVVAEMVDEV 682
E+RK +G+ + F TVR+ + + + + +++ +
Sbjct: 100 TIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELL 159
Query: 683 GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-- 740
G + +LS G +R++ + AL+ D +++ILDEP G+D + ++++
Sbjct: 160 GAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAA 219
Query: 741 -KKGRIILLTTHSMDEA 756
+L TH +E
Sbjct: 220 SPGAPALLFVTHHAEEI 236
|
Length = 257 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 1e-19
Identities = 63/199 (31%), Positives = 114/199 (57%), Gaps = 7/199 (3%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT-ADMDEIRK 636
A+ + ++YE + +A++GHNG+GKST +L GL+ P G V G ++ + ++R+
Sbjct: 22 ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRR 81
Query: 637 GLGVCPQY-DILFPELTVREHLEMFAVLKGV-KEELLESVVAEMVDEVGLADKVNIVVRA 694
+G+ Q D F TV++ + GV +EE++E V + + +VG+ D +N
Sbjct: 82 QVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVER-VDQALRQVGMEDFLNREPHR 140
Query: 695 LSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLT-THS 752
LSGG K+++++ L ++ILDE TS +DP R + ++++K + I +L+ TH
Sbjct: 141 LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHD 200
Query: 753 MDEAEELGDRIAIMANGSL 771
+DEA + DR+ +M G +
Sbjct: 201 LDEAAQ-ADRVIVMNKGEI 218
|
Length = 279 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 1e-19
Identities = 59/182 (32%), Positives = 100/182 (54%), Gaps = 5/182 (2%)
Query: 592 LALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD-MDEIRKGLGVCPQY-DILFP 649
L+++GHNG+GKSTT+ ++ GL+ +G ++ G +T + + +IR +G+ Q D F
Sbjct: 36 LSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFV 95
Query: 650 ELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIAL 709
TV + + KG+ E ++ V E ++ VG+ D LSGG K+++++ A+
Sbjct: 96 GATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAV 155
Query: 710 IGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMA 767
K++ILDE TS +DP + IK I+ ++ TH +DE L DR+ +M
Sbjct: 156 AMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMK 214
Query: 768 NG 769
NG
Sbjct: 215 NG 216
|
Length = 279 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 2e-19
Identities = 64/217 (29%), Positives = 116/217 (53%), Gaps = 17/217 (7%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
++IR L K + + AV+ + LT+Y+ +I ALLG +G GKST + ML G PT G
Sbjct: 20 LEIRNLTKSFDGQH----AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQ 75
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELL-----ESV 674
++ G ++ + + ++ + + Q LFP +TV +++ G+K++ L S
Sbjct: 76 IMLDGVDL-SHVPPYQRPINMMFQSYALFPHMTVEQNIAF-----GLKQDKLPKAEIASR 129
Query: 675 VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD-PYSMRLT 733
V EM+ V + + LSGG +++++L +L K+++LDEP +D R+
Sbjct: 130 VNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQ 189
Query: 734 WQLIKKIKK-GRIILLTTHSMDEAEELGDRIAIMANG 769
+++ +++ G ++ TH +EA + RIAIM G
Sbjct: 190 LEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRG 226
|
Length = 377 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 2e-19
Identities = 52/193 (26%), Positives = 89/193 (46%), Gaps = 41/193 (21%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEIRKG 637
+ ++ ++ + LA++G +G+GKST +++GL+ PT+G + G +I D +E+
Sbjct: 18 LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDH 77
Query: 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSG 697
+G PQ D LF ++ E NI LSG
Sbjct: 78 VGYLPQDDELFSG-SIAE---------------------------------NI----LSG 99
Query: 698 GMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK-GRIILLTTHSMDEA 756
G +++L L AL G+ ++++LDEP S +D R Q I +K G ++ H E
Sbjct: 100 GQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP-ET 158
Query: 757 EELGDRIAIMANG 769
DRI ++ +G
Sbjct: 159 LASADRILVLEDG 171
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.2 bits (224), Expect = 2e-19
Identities = 63/214 (29%), Positives = 111/214 (51%), Gaps = 8/214 (3%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I++ LH Y K G A+ L L++ E ALLG NGAGKST + L G+ P G
Sbjct: 5 IEVEDLHFRY--KDGTK-ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGR 61
Query: 620 ALVFGKNITADMD-EIRKGLGVCPQ--YDILFPELTVREHLEMFAVLKGVKEELLESVVA 676
V G+ + A+ + +R +G+ Q D +F TV + + V G+ ++ +E V
Sbjct: 62 VKVMGREVNAENEKWVRSKVGLVFQDPDDQVF-SSTVWDDVAFGPVNMGLDKDEVERRVE 120
Query: 677 EMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQL 736
E + V + D + LS G K+++++ L D V++LDEP + +DP ++
Sbjct: 121 EALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEI 180
Query: 737 IKKI-KKGRIILLTTHSMDEAEELGDRIAIMANG 769
+ ++ +G+ +++ TH +D A E D++ ++ G
Sbjct: 181 LDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEG 214
|
Length = 274 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.5 bits (224), Expect = 2e-19
Identities = 66/211 (31%), Positives = 108/211 (51%), Gaps = 14/211 (6%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEI--- 634
A+N+ LT +N++ ++G G+GKST I + GLI TG +V I A++ +I
Sbjct: 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEV 85
Query: 635 ---RKGLGVC---PQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA-DK 687
RK +G+ P+Y LF E T+ + + V G ++ V E++ V L D
Sbjct: 86 KRLRKEIGLVFQFPEYQ-LFQE-TIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDY 143
Query: 688 VNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRI 745
V LSGG KR+++L + D ++LDEPT G+DP L +++ K +
Sbjct: 144 VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKR 203
Query: 746 ILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
I++ TH+MD+ + D + +M G + GS
Sbjct: 204 IIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234
|
Length = 289 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 2e-19
Identities = 60/202 (29%), Positives = 99/202 (49%), Gaps = 14/202 (6%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGK--NITADMDEIR 635
A++ + Q+ AL+G NGAGKST + +L G P G L+ G+ + +
Sbjct: 19 ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALA 78
Query: 636 KGLGVCPQYDILFPELTVREHLEMFAVLKG----VKEELLESVVAEMVDEVGLADKVNIV 691
G+ + Q L PE+TV E+L L V LL E ++ +G+ +
Sbjct: 79 AGVAIIYQELHLVPEMTVAENL-YLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP 137
Query: 692 VRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK----KGRIIL 747
++ LS G ++ + + AL +++V+ DEPTS + S R QL + I+ +GR+IL
Sbjct: 138 LKYLSIGQRQMVEIAKALARNARVIAFDEPTSSL---SAREIEQLFRVIRELRAEGRVIL 194
Query: 748 LTTHSMDEAEELGDRIAIMANG 769
+H M+E L D I + +G
Sbjct: 195 YVSHRMEEIFALCDAITVFKDG 216
|
Length = 501 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 2e-19
Identities = 55/183 (30%), Positives = 91/183 (49%), Gaps = 13/183 (7%)
Query: 1483 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAA- 1541
K + + FS++ GE +G GAGKTT ++++ P G I G DIR + +
Sbjct: 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSL 75
Query: 1542 RRLIGYCPQFDALLEYLTVQEHLEL---YAR----IKGVAEYRMDDVVMEKLVEFDLLKH 1594
R +IG Q D L T+ E++ L A I+ E D +M KL
Sbjct: 76 RSMIGVVLQ-DTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIM-KLPN-GYDTV 132
Query: 1595 AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKT 1654
+ LS G ++ L++A AM+ DP I+ILDE ++ +D ++ + E + +L +G+T
Sbjct: 133 LGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKL--MKGRT 190
Query: 1655 AVI 1657
++I
Sbjct: 191 SII 193
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 2e-19
Identities = 59/190 (31%), Positives = 100/190 (52%), Gaps = 17/190 (8%)
Query: 574 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMD 632
G ++ + L L + +A+LG +G+GKST ++ L GL+ P G+ + G + + D D
Sbjct: 346 GAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQD 405
Query: 633 EIRKGLGVCPQYDILFPELTVREHL----------EMFAVLKGVKEELLESVVAEMVDEV 682
E+R+ + VC Q LF + TVRE+L E++A L+ V L + + D
Sbjct: 406 EVRRRVSVCAQDAHLF-DTTVRENLRLARPDATDEELWAALERVG---LADWLRALPD-- 459
Query: 683 GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK 742
GL + LSGG +++L+L AL+ D+ +++LDEPT +D + + +
Sbjct: 460 GLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALS 519
Query: 743 GRIILLTTHS 752
GR ++L TH
Sbjct: 520 GRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 3e-19
Identities = 65/230 (28%), Positives = 108/230 (46%), Gaps = 17/230 (7%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1523
+I L N K + G K A++ L+ + G+ +G+NGAGK+T L+ I+G+ PT
Sbjct: 1 MISLSNATKTFFKGT-PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT 59
Query: 1524 DGTAFIFGKDIRSDPKAAR-RLIGYCPQFDALL---EYLTVQEHLELYARIKGVAE---- 1575
G I G D+ A R L+ Q D L LT++E+L L A +G
Sbjct: 60 SGQILIDGVDVTKKSVAKRANLLARVFQ-DPLAGTAPELTIEENLAL-AESRGKKRGLSS 117
Query: 1576 ---YRMDDVVMEKLVEFD--LLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPST 1630
R E+L L LSGG ++ LS+ +A + P I++LDE +
Sbjct: 118 ALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTA 177
Query: 1631 GMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQ 1680
+DP F+ E+ +++ T +++ TH+M +A R+ ++ G+
Sbjct: 178 ALDPKTAEFVMELTAKIVEEHKLTTLMV-THNMEDALDYGNRLIMLHSGK 226
|
Length = 263 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 3e-19
Identities = 61/222 (27%), Positives = 102/222 (45%), Gaps = 22/222 (9%)
Query: 1483 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPK--- 1539
A+H + + G+ + +G G+GK+T + I+ PT GT + I K
Sbjct: 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKY 79
Query: 1540 --AARRLIGYCPQF-DALLEYLTVQEHLELYARIKGVAEYRMD-DVVMEKLVEFDLLKH- 1594
R+ IG QF ++ L TV+ + G ++M+ D V LL
Sbjct: 80 IRPVRKRIGMVFQFPESQLFEDTVEREIIF-----GPKNFKMNLDEVKNY--AHRLLMDL 132
Query: 1595 ------AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLS 1648
+ F +SGG RK+++ + +P I++LDEP+ G+DP +KR + ++ L
Sbjct: 133 GFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQ 192
Query: 1649 TRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
T + KT +IL +H MNE + +M G + SP+ L
Sbjct: 193 TDENKT-IILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL 233
|
Length = 286 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 3e-19
Identities = 59/207 (28%), Positives = 106/207 (51%), Gaps = 12/207 (5%)
Query: 1489 LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDI-RSDPKAARRLIGY 1547
+V AGE LG +GAGK+T L++I+G E P G I G D S P A R +
Sbjct: 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP--AERPVSM 75
Query: 1548 CPQFDALLEYLTVQEHLEL----YARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLS 1603
Q + L +LTV +++ L ++ +++ + + LK + P LS
Sbjct: 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLA-GFLK--RLPG-ELS 131
Query: 1604 GGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSM 1663
GG ++++++A ++ + PI++LDEP + +DP + M ++S+L + T +++ TH
Sbjct: 132 GGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMT-LLMVTHHP 190
Query: 1664 NEAQALCTRIGIMVGGQLRCIGSPQHL 1690
+A + R+ + G++ GS Q L
Sbjct: 191 EDAARIADRVVFLDNGRIAAQGSTQEL 217
|
Length = 231 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 3e-19
Identities = 71/254 (27%), Positives = 123/254 (48%), Gaps = 25/254 (9%)
Query: 1458 GSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMIS 1517
+ + LRN+ YPG + A+ + ++ GE LG +G+GK+T L +++
Sbjct: 330 TATTGQALELRNVSFTYPGQQTK----ALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLA 385
Query: 1518 GEEYPTDGTAFIFGKDIRS-DPKAARRLIGYCPQ----FDALLEYLTVQEHLELYARIKG 1572
G P G+ + G +I S D +A R I Q F T++++L L
Sbjct: 386 GAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSG-----TLRDNLRLANPDAS 440
Query: 1573 VAEYR--MDDVVMEKLVEFD---LLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDE 1627
E + V +EKL+E L + LSGG +R+L++A A++ D P+ +LDE
Sbjct: 441 DEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDE 500
Query: 1628 PSTGMDPIAKRFMWEVISRLSTR-QGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS 1686
P+ G+DPI +R +V++ L +GKT +++ TH + + RI ++ G++ G+
Sbjct: 501 PTEGLDPITER---QVLALLFEHAEGKT-LLMVTHRLRGLER-MDRIIVLDNGKIIEEGT 555
Query: 1687 PQHLKTRFGNFLEL 1700
L G + L
Sbjct: 556 HAELLANNGRYKRL 569
|
Length = 573 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 3e-19
Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 44/189 (23%)
Query: 589 NQILALLGHNGAGKSTTISML-----VGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQ 643
+ AL+G +GAGK+T + +L G+I TG+ L+ G+ + ++ G Q
Sbjct: 33 GTLTALMGESGAGKTTLLDVLAGRKTAGVI---TGEILINGRPLD---KNFQRSTGYVEQ 86
Query: 644 YDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKL 703
D+ P LTVRE L A+L R LS +++L
Sbjct: 87 QDVHSPNLTVREALRFSALL-----------------------------RGLSVEQRKRL 117
Query: 704 SLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-KKGRIILLTTH--SMDEAEELG 760
++G+ L ++ LDEPTSG+D + + +KK+ G+ IL T H S E+
Sbjct: 118 TIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKF- 176
Query: 761 DRIAIMANG 769
DR+ ++ G
Sbjct: 177 DRLLLLKRG 185
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.9 bits (220), Expect = 4e-19
Identities = 61/208 (29%), Positives = 116/208 (55%), Gaps = 14/208 (6%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIP--PTTGDALVFGKNITA--- 629
A+N++ + + +N I AL+G +G GKST T++ + L+ G+ + GKNI +
Sbjct: 22 ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNF 81
Query: 630 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEEL-LESVVAEMVDEVGL---- 684
D+ E+R+ +G+ Q F +++ +++ + G K++ L+ +V + + + L
Sbjct: 82 DILELRRKIGMVFQTPNPF-LMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV 140
Query: 685 ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGR 744
DK+N +LSGG +++L + L + V+++DEPTS +DP S +LI +K+
Sbjct: 141 KDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESY 200
Query: 745 IILLTTHSMDEAEELGDRIAIMANGSLK 772
I++ TH+M +A + DR A NG ++
Sbjct: 201 TIIIVTHNMQQAGRISDRTAFFLNGCIE 228
|
Length = 254 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.4 bits (219), Expect = 5e-19
Identities = 62/208 (29%), Positives = 114/208 (54%), Gaps = 17/208 (8%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIP--PTTGDALVFGKNITADMD 632
A+ S+ L + Q+ AL+G +G GKST ++ + LI TG + G++I ++D
Sbjct: 18 ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID 77
Query: 633 --EIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEE-LLESVV------AEMVDEVG 683
++R +G+ Q FP +++ E++ +G+K++ +L+ VV A + DEV
Sbjct: 78 VADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV- 135
Query: 684 LADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKG 743
D++ LSGG +++L + + + V+++DEPTS +DP + +L++++KK
Sbjct: 136 -KDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKN 194
Query: 744 RIILLTTHSMDEAEELGDRIAIMANGSL 771
I++ THSM +A + DR A G L
Sbjct: 195 YTIVIVTHSMQQARRISDRTAFFLMGEL 222
|
Length = 249 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 5e-19
Identities = 61/209 (29%), Positives = 105/209 (50%), Gaps = 21/209 (10%)
Query: 573 RGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA--- 629
RGN C +++ LT+ +I A++G +G GK+T + ++ G I P G+ L G+NI A
Sbjct: 17 RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSR 76
Query: 630 -DMDEIRKGLGVCPQYDILFPELTV--------REHLEMFAVLKGVKEELLESVVAEMVD 680
+ +RK + + Q LF ++ V REH ++ LL S V ++
Sbjct: 77 SRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQL-------PAPLLHSTVMMKLE 129
Query: 681 EVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI 740
VGL ++ LSGGM R+ +L A+ + +++ DEP G DP +M + +LI ++
Sbjct: 130 AVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISEL 189
Query: 741 KK--GRIILLTTHSMDEAEELGDRIAIMA 767
G ++ +H + E + D I+A
Sbjct: 190 NSALGVTCVVVSHDVPEVLSIADHAYIVA 218
|
Length = 269 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 5e-19
Identities = 65/256 (25%), Positives = 116/256 (45%), Gaps = 58/256 (22%)
Query: 560 IQIRKLHKVYATKRGNC-----CAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP 614
++++ L K + +G AV+ + ++ E + L L+G +G GKST +++GL
Sbjct: 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64
Query: 615 PTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESV 674
PT+G+ L GK+IT + KEE E
Sbjct: 65 PTSGEILFEGKDIT-KLS----------------------------------KEERRE-R 88
Query: 675 VAEMVDEVGLADKV-NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMR-- 731
V E++++VGL ++ LSGG ++++ + AL + K+++ DEP S +D S++
Sbjct: 89 VLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALD-VSVQAQ 147
Query: 732 -LTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSS--LFL--KHQY 784
L L+K +++ G L +H + + DRIA+M G + G + +F H
Sbjct: 148 ILN--LLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHP- 204
Query: 785 GVGYTLTLVKSAPDAS 800
YT L+ + P
Sbjct: 205 ---YTKALLSAVPVPD 217
|
Length = 268 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 5e-19
Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 7/171 (4%)
Query: 582 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVC 641
L TL + L + G NG+GK+T + +L GL PP G L+ G + D I +GL
Sbjct: 19 LSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYL 78
Query: 642 PQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKR 701
+ L+V E+L + + V E + VGL + V LS G +R
Sbjct: 79 GHAPGIKTTLSVLENLRFWHADHS------DEQVEEALARVGLNGFEDRPVAQLSAGQQR 132
Query: 702 KLSLGIALIGDSKVVILDEPTSGMDPYSM-RLTWQLIKKIKKGRIILLTTH 751
+++L L+ + ILDEPT+ +D + R + +G +++LTTH
Sbjct: 133 RVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTH 183
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 5e-19
Identities = 65/215 (30%), Positives = 115/215 (53%), Gaps = 18/215 (8%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIPPTT--GDALVFGKNITA--- 629
A++ + L +NQ+ AL+G +G GKST ++ + LIP G+ L+ G+NI
Sbjct: 21 ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHV 80
Query: 630 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK-EELLESVV------AEMVDEV 682
D+ E+R+ +G+ Q FP+ ++ E++ + GVK + L V A + DEV
Sbjct: 81 DVVELRRRVGMVFQKPNPFPK-SIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV 139
Query: 683 GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK 742
D+++ LSGG +++L + AL + +V+++DEP S +DP + + +LI ++K
Sbjct: 140 --KDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA 197
Query: 743 GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSS 777
I++ TH+M +A + D A G L G +
Sbjct: 198 RYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPT 232
|
Length = 253 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 5e-19
Identities = 52/195 (26%), Positives = 91/195 (46%), Gaps = 36/195 (18%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 637
+ +L L L + + +ALLG +G+GKST + +L G + P G+ + G ++ +
Sbjct: 17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSL 76
Query: 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSG 697
+ V Q LF + T+R +L R SG
Sbjct: 77 ISVLNQRPYLF-DTTLRNNLG----------------------------------RRFSG 101
Query: 698 GMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAE 757
G +++L+L L+ D+ +V+LDEPT G+DP + R LI ++ K + ++ TH + E
Sbjct: 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161
Query: 758 ELGDRIAIMANGSLK 772
+ D+I + NG +
Sbjct: 162 HM-DKILFLENGKII 175
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 6e-19
Identities = 58/187 (31%), Positives = 100/187 (53%), Gaps = 5/187 (2%)
Query: 594 LLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTV 653
LLG +G GK+T + +L G P +G ++ G+++T +R + + Q LFP +TV
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLR-HINMVFQSYALFPHMTV 59
Query: 654 REHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDS 713
E++ ++ V ++ V E + V L + + LSGG +++++L AL+
Sbjct: 60 EENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKP 119
Query: 714 KVVILDEPTSGMDPYSMRLTWQL-IKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGS 770
K+++LDEP S +D +R QL +K I++ G + TH +EA + DRIAIM G
Sbjct: 120 KILLLDEPLSALD-KKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGK 178
Query: 771 LKCCGSS 777
+ G+
Sbjct: 179 IAQIGTP 185
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 6e-19
Identities = 65/233 (27%), Positives = 113/233 (48%), Gaps = 13/233 (5%)
Query: 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY 1521
+ II + +L Y G + A+ L+ S+ G LG NGAGK+T L ++G
Sbjct: 2 DNIIEVEDLHFRYKDGTK-----ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL 56
Query: 1522 PTDGTAFIFGKDI-RSDPKAARRLIGYCPQF-DALLEYLTVQEHLELYARIKGVAEYRMD 1579
P G + G+++ + K R +G Q D + TV + + G+ + ++
Sbjct: 57 PQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVE 116
Query: 1580 DVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVA--IAMIGDPPIVILDEPSTGMDPIAK 1637
V E L + KP + LS G K+++++A +AM DP +++LDEP +DP +
Sbjct: 117 RRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAM--DPDVIVLDEPMAYLDPRGQ 174
Query: 1638 RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
+ E++ RL QGKT VI+ TH ++ A ++ ++ G++ G L
Sbjct: 175 ETLMEILDRLH-NQGKT-VIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225
|
Length = 274 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 6e-19
Identities = 59/214 (27%), Positives = 92/214 (42%), Gaps = 28/214 (13%)
Query: 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY 1521
++ N+ K Y GG+ + L+F + G+ +G NGAGK+T L +++GE
Sbjct: 319 KLVLEFENVSKGYDGGRLL-----LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG 373
Query: 1522 PTDGTAFIFGKDIRSDPKAARRLIGYCPQ-FDALLEYLTVQEHLELYARIKGVAEYRMDD 1580
P GT G+ ++ IGY Q D L TV E L E R
Sbjct: 374 PLSGT-VKVGETVK---------IGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVR--- 420
Query: 1581 VVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF 1639
L F + +KP LSGG K +L +A ++ P +++LDEP+ +D +
Sbjct: 421 ---AYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLE- 476
Query: 1640 MWEVISRLSTRQGKTAVILTTHSMNEAQALCTRI 1673
+ L +G V+L +H + TRI
Sbjct: 477 --ALEEALLDFEG--TVLLVSHDRYFLDRVATRI 506
|
Length = 530 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 7e-19
Identities = 53/213 (24%), Positives = 101/213 (47%), Gaps = 25/213 (11%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 636
+ ++ ++ + + ++G G+GKS+ + L L+ ++G L+ G +I+ + ++R
Sbjct: 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRS 78
Query: 637 GLGVCPQYDILFPELTVREHL---------EMFAVLKGVKEELLESVVAEMVDEVGLADK 687
+ + PQ +LF T+R +L E++ L+ V L+ V + GL
Sbjct: 79 RISIIPQDPVLF-SGTIRSNLDPFGEYSDEELWQALERVG---LKEFVESLPG--GLDTV 132
Query: 688 VNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIIL 747
V LS G ++ L L AL+ SK+++LDE T+ +DP + L + I++ K +L
Sbjct: 133 VEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVL 192
Query: 748 LTTHS----MDEAEELGDRIAIMANGSLKCCGS 776
H +D DRI ++ G + S
Sbjct: 193 TIAHRLDTIIDS-----DRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 9e-19
Identities = 63/262 (24%), Positives = 122/262 (46%), Gaps = 43/262 (16%)
Query: 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMIS--GEE 1520
I +R+L +Y G K A+ + + + +G +G GK+T L ++ +
Sbjct: 6 PAIEVRDLN-LYYGDKH-----ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDL 59
Query: 1521 YP---TDGTAFIFGKDIRS---DPKAARRLIGYCPQ----FDALLEYLTVQEHLELYARI 1570
P +G + GK+I D RR +G Q F +++ +++ R+
Sbjct: 60 IPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-----MSIYDNVAYGLRL 114
Query: 1571 KGVAEYRMDDVVMEKLVE---FDLLKHA-KKPSFTLSGGNKRKLSVAIAMIGDPPIVILD 1626
G+ + +D++V L + +D +K K + LSGG +++L +A A+ P ++++D
Sbjct: 115 HGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMD 174
Query: 1627 EPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG- 1685
EP++ +DPI+ + E+I+ L K +++ TH+M +A + G+L G
Sbjct: 175 EPTSALDPISTLKIEELITELKK---KYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGP 231
Query: 1686 ------SPQHLKT------RFG 1695
+P+H +T RFG
Sbjct: 232 TDKIFTNPKHKRTEDYISGRFG 253
|
Length = 253 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.8 bits (217), Expect = 9e-19
Identities = 67/225 (29%), Positives = 117/225 (52%), Gaps = 18/225 (8%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGL---IP-- 614
I + +H Y GN A++ + L E ++ AL+G +G GKST + L + I
Sbjct: 5 ISAKDVHLSY----GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENI 60
Query: 615 PTTGDALVFGKNITA---DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKE-EL 670
TG+ G+NI D+ E+RK +G+ Q FP +V +++ + GVK+ EL
Sbjct: 61 KITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKEL 119
Query: 671 LESVVAEMVDEVGL----ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 726
++ V E + + + D ++ +A SGG ++++ + AL KVV+LDEPTS +D
Sbjct: 120 IDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALD 179
Query: 727 PYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 771
P S + + ++K ++ TH++ +A + D+ A + NG L
Sbjct: 180 PISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDL 224
|
Length = 251 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 9e-19
Identities = 55/229 (24%), Positives = 100/229 (43%), Gaps = 33/229 (14%)
Query: 1489 LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDI-RSDPKAARRLIGY 1547
L+ + GE +G +G+GK+T L ++ G P G + G D+ D + RR +GY
Sbjct: 492 LSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGY 551
Query: 1548 CPQFDALLEYLTVQEHLELY------------ARIKGVAEY--RMDDVVMEKLVEFDLLK 1593
Q D L +++E++ L A++ G E+ + + E
Sbjct: 552 VLQ-DPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEG---- 606
Query: 1594 HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGK 1653
LSGG +++L++A A++ P I++LDE ++ +DP + ++ L
Sbjct: 607 -----GANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEA---IILQNLLQILQG 658
Query: 1654 TAVILTTH--SMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1700
VI+ H S RI ++ G++ GS + L + G + L
Sbjct: 659 RTVIIIAHRLSTI---RSADRIIVLDQGKIVEQGSHEELLAQGGLYARL 704
|
Length = 709 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 9e-19
Identities = 63/224 (28%), Positives = 110/224 (49%), Gaps = 18/224 (8%)
Query: 1485 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDP--KAAR 1542
AV+++ V+ E +G NGAGKTT + ++G PT GT + G+ I P + AR
Sbjct: 20 AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIAR 79
Query: 1543 RLIGYCPQ----FDAL--LEYLTVQEHLELYARI-----KGVAEYRMDDVVMEK----LV 1587
+ Q F + +E L V +H +L + K A R + +++ L
Sbjct: 80 MGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLE 139
Query: 1588 EFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRL 1647
LL+HA + + L+ G +R+L +A M+ P I++LDEP+ G++P + + E+I+ L
Sbjct: 140 RVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAEL 199
Query: 1648 STRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1691
+ V+L H M + RI ++ G G+P+ ++
Sbjct: 200 R-NEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIR 242
|
Length = 255 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 9e-19
Identities = 55/209 (26%), Positives = 105/209 (50%), Gaps = 27/209 (12%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 636
+ + + + Q +++GHNG+GKST +++G+ +G+ + IT + +++RK
Sbjct: 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRK 83
Query: 637 GLGVCPQ------------YDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGL 684
+G+ Q YD+ F LE AV + + V+E + +V +
Sbjct: 84 HIGIVFQNPDNQFVGSIVKYDVAF-------GLENHAV----PYDEMHRRVSEALKQVDM 132
Query: 685 ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK--K 742
++ + ALSGG K+++++ L + V+ILDE TS +DP + + L++K+K
Sbjct: 133 LERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEH 192
Query: 743 GRIILLTTHSMDEAEELGDRIAIMANGSL 771
I+ TH + EA E D + +M G++
Sbjct: 193 NITIISITHDLSEAME-ADHVIVMNKGTV 220
|
Length = 269 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 1e-18
Identities = 58/223 (26%), Positives = 117/223 (52%), Gaps = 11/223 (4%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I++R + K + G+ A++ + L + +++ALLG +G+GK+T + ++ GL P +G
Sbjct: 3 IEVRNVSKRF----GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGT 58
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREH----LEMFAVLKGVKEELLESVV 675
L G++ T D+ + +G Q+ LF +TV ++ L + + E + + V
Sbjct: 59 ILFGGEDAT-DVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKV 117
Query: 676 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ 735
E++ V L + LSGG +++++L AL + KV++LDEP +D + +
Sbjct: 118 HELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRR 177
Query: 736 LIKKI--KKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
++++ + + TH +EA E+ DR+ +M G ++ G+
Sbjct: 178 WLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGT 220
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.1 bits (223), Expect = 1e-18
Identities = 53/218 (24%), Positives = 112/218 (51%), Gaps = 6/218 (2%)
Query: 1478 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD 1537
+++ + V + +++ GE F +G +G+GK+T + +++ PT G I G DI
Sbjct: 36 EKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKI 95
Query: 1538 PKAA-----RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL 1592
A R+ I Q AL+ ++TV ++ + G+ + ++ L + L
Sbjct: 96 SDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLE 155
Query: 1593 KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1652
+A LSGG ++++ +A A+ +P I+++DE + +DP+ + M + + +L +
Sbjct: 156 NYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQ 215
Query: 1653 KTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
+T ++ +H ++EA + RI IM G++ +G+P +
Sbjct: 216 RT-IVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEI 252
|
Length = 400 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 1e-18
Identities = 56/212 (26%), Positives = 94/212 (44%), Gaps = 11/212 (5%)
Query: 1486 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR-RL 1544
+ ++ ++ GE LG NGAGK+T L +SGE P G + G + S P R
Sbjct: 17 LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARH 76
Query: 1545 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDD--VVMEKLVEFDLLKHAKKPSFTL 1602
PQ +L TVQE +++ +D + + L DL A + TL
Sbjct: 77 RAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTL 136
Query: 1603 SGGNKRKLSVAIAM------IGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAV 1656
SGG ++++ +A + + + LDEP++ +D + + +L+ G
Sbjct: 137 SGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLA 196
Query: 1657 ILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1688
+L H +N A RI ++ G++ GSPQ
Sbjct: 197 VL--HDLNLAAQYADRIVLLHQGRVIASGSPQ 226
|
Length = 259 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.5 bits (214), Expect = 1e-18
Identities = 61/194 (31%), Positives = 103/194 (53%), Gaps = 9/194 (4%)
Query: 1476 GGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIR 1535
G DAK+ +++++ SV+AGE G +G GK+T L +++ PT GT G+D+
Sbjct: 10 GYLAGDAKI-LNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVS 68
Query: 1536 S-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMD-DVVMEKLVEFDL-L 1592
+ P+A R+ + YC Q AL TV+++L +I+ R D ++ L F L
Sbjct: 69 TLKPEAYRQQVSYCAQTPALFGD-TVEDNLIFPWQIR---NRRPDRAAALDLLARFALPD 124
Query: 1593 KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1652
K LSGG K+++++ + P I++LDE ++ +D KR + E+I R R+
Sbjct: 125 SILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRY-VREQ 183
Query: 1653 KTAVILTTHSMNEA 1666
AV+ TH ++A
Sbjct: 184 NVAVLWITHDKDQA 197
|
Length = 223 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 2e-18
Identities = 64/197 (32%), Positives = 90/197 (45%), Gaps = 13/197 (6%)
Query: 1489 LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYC 1548
L+F++ AGE G NG+GKTT L +I+G P GT + G DI DP A Y
Sbjct: 21 LSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDID-DPDVAEA-CHYL 78
Query: 1549 PQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKR 1608
+A+ LTV E+LE +A G E + L L A P LS G KR
Sbjct: 79 GHRNAMKPALTVAENLEFWAAFLGGEELD----IAAALEAVGLAPLAHLPFGYLSAGQKR 134
Query: 1609 KLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHS---MNE 1665
++++A ++ + PI ILDEP+ +D A E+I + G VI TH +
Sbjct: 135 RVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGG--IVIAATHIPLGLPG 192
Query: 1666 AQALCTRIGIMVGGQLR 1682
A+ L +G
Sbjct: 193 AREL--DLGPFAAEDPA 207
|
Length = 207 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 2e-18
Identities = 59/215 (27%), Positives = 111/215 (51%), Gaps = 12/215 (5%)
Query: 1484 VAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKD-----IRSDP 1538
+ VH+ + ++ GE +G +G+GK+T L ++G + G+ + D D
Sbjct: 38 LGVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDA 97
Query: 1539 KAARRL----IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKH 1594
RRL + Q ALL + TV+E++ ++G+ + V E+L L +
Sbjct: 98 ATLRRLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLELVGLAQW 157
Query: 1595 AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP-IAKRFMWEVISRLSTRQGK 1653
A + LSGG ++++ +A A + PI+++DEP + +DP I + E++ L ++ K
Sbjct: 158 ADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELL-ELQSKLKK 216
Query: 1654 TAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1688
T ++ +H ++EA + RI IM GG++ G+P+
Sbjct: 217 T-IVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPE 250
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 2e-18
Identities = 57/227 (25%), Positives = 113/227 (49%), Gaps = 15/227 (6%)
Query: 560 IQIRKLHKVYAT-----KRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP 614
+++R + Y T + + ++ L++ E + + LLG +G GKST +L+GL
Sbjct: 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK 62
Query: 615 PTTGDALVFGKNIT----ADMDEIRKGLGVCPQ--YDILFPELTVREHL-EMFAVLKGVK 667
P G G+++ R+ + + Q + P +TVR+ + E L +
Sbjct: 63 PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLD 122
Query: 668 EELLESVVAEMVDEVGL-ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 726
E ++ +AE++D VGL ++ + + R LSGG +++++ AL K+++LDE S +D
Sbjct: 123 ESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLD 182
Query: 727 PYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSL 771
+ +L++K+++ G L TH + + R+A+M G +
Sbjct: 183 MVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQI 229
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 2e-18
Identities = 60/201 (29%), Positives = 108/201 (53%), Gaps = 10/201 (4%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 636
+ + ++ + +A++G +G+GKST I +L+ L PT+G+ L+ G +I +D +RK
Sbjct: 344 VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRK 403
Query: 637 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEV--GLADKVNIVV-- 692
+G+ Q +LF T+RE++ EE+ E++ E L D + +V
Sbjct: 404 RIGIVSQDPLLFSG-TIRENI-ALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGE 461
Query: 693 --RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTT 750
LSGG +++L++ AL+ + ++ILDE TS +D + L +KK+ KGR L+
Sbjct: 462 RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIA 521
Query: 751 HSMDEAEELGDRIAIMANGSL 771
H + + DRI ++ NG +
Sbjct: 522 HRLSTIKN-ADRIIVLDNGRI 541
|
Length = 567 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 84.0 bits (209), Expect = 3e-18
Identities = 56/201 (27%), Positives = 92/201 (45%), Gaps = 40/201 (19%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADM--DEIR 635
AV + + +I+ + G G G++ L GL PP +G+ + GK +T D IR
Sbjct: 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIR 74
Query: 636 KGLGVCP---QYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVV 692
G+ P + + L +L+V E NI +
Sbjct: 75 AGIAYVPEDRKREGLVLDLSVAE---------------------------------NIAL 101
Query: 693 RA-LSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTT 750
+ LSGG ++K+ L L D +V+ILDEPT G+D + ++LI+++ G+ +LL +
Sbjct: 102 SSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLIS 161
Query: 751 HSMDEAEELGDRIAIMANGSL 771
+DE L DRI +M G +
Sbjct: 162 SELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 3e-18
Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 5/173 (2%)
Query: 1489 LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYC 1548
L+F++ AGE G NGAGKTT L +++G P G + G+ I++ ++ + + Y
Sbjct: 21 LSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYL 80
Query: 1549 PQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKR 1608
+ LT E+L + R G + E L + L P LS G +R
Sbjct: 81 GHQPGIKTELTALENLHFWQRFHG---SGNAATIWEALAQVGLAGLEDLPVGQLSAGQQR 137
Query: 1609 KLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1661
++++A + P+ ILDEP T +D + +++ + + G V+LTTH
Sbjct: 138 RVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGG--IVLLTTH 188
|
Length = 209 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 3e-18
Identities = 69/240 (28%), Positives = 114/240 (47%), Gaps = 26/240 (10%)
Query: 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY 1521
II + ++ YP A A+ ++FSV GE +G NG+GK+T +++G
Sbjct: 3 EEIIRVEHISFRYPD----AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL 58
Query: 1522 PTDGTAFIFGK--------DIRSDPKAARRLIGYCPQF-DALLEYLTVQEHLELYARIKG 1572
P GT + G D+R R +G Q D TVQ+ + G
Sbjct: 59 PEAGTITVGGMVLSEETVWDVR-------RQVGMVFQNPDNQFVGATVQDDVAFGLENIG 111
Query: 1573 VAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMI--GDPPIVILDEPST 1630
V M + V + L + + + LSGG K++ VAIA + P I+ILDE ++
Sbjct: 112 VPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQR--VAIAGVLALQPDIIILDEATS 169
Query: 1631 GMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
+DP +R + E + +L ++G T V+ TH ++EA A R+ +M G++ G+P+ +
Sbjct: 170 MLDPRGRREVLETVRQLKEQKGIT-VLSITHDLDEA-AQADRVIVMNKGEILEEGTPEEI 227
|
Length = 279 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 3e-18
Identities = 69/240 (28%), Positives = 115/240 (47%), Gaps = 7/240 (2%)
Query: 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1522
II ++NL Y K K ++ ++F V+ GE +G NG+GK+TT+ +I G
Sbjct: 3 NIIEVKNLTFKY---KEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA 59
Query: 1523 TDGTAFIFGKDIRSDPK-AARRLIGYCPQF-DALLEYLTVQEHLELYARIKGVAEYRMDD 1580
G I G + + R IG Q D TV++ + KG+ M +
Sbjct: 60 ESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKE 119
Query: 1581 VVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1640
V E L + ++ LSGG K+++++A A+ P I+ILDE ++ +DP + +
Sbjct: 120 RVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLEL 179
Query: 1641 WEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1700
+ I + T VI TH ++E AL R+ +M GQ+ +P+ L +R + L+L
Sbjct: 180 IKTIKGIRDDYQMT-VISITHDLDEV-ALSDRVLVMKNGQVESTSTPRELFSRGNDLLQL 237
|
Length = 279 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 3e-18
Identities = 63/207 (30%), Positives = 111/207 (53%), Gaps = 10/207 (4%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDA---LVFGKNITAD-MDE 633
A+N + ++ AL+GHNG+GKST ++ GL+ P V G +TA + +
Sbjct: 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD 81
Query: 634 IRKGLGVCPQY-DILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVV 692
IR+ +G+ Q D F TV + + + V + +V +++ +VG+ D ++
Sbjct: 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP 141
Query: 693 RALSGGMKRKLSL-GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLT 749
LSGG K+++++ GI + K++ILDE TS +DP +LI+K+KK ++
Sbjct: 142 ANLSGGQKQRVAIAGILAVE-PKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISI 200
Query: 750 THSMDEAEELGDRIAIMANGSLKCCGS 776
TH +DEA + D++ ++ +G L GS
Sbjct: 201 THDIDEA-NMADQVLVLDDGKLLAQGS 226
|
Length = 282 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.2 bits (213), Expect = 3e-18
Identities = 60/213 (28%), Positives = 109/213 (51%), Gaps = 13/213 (6%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIPPT--TGDALVFGKNI---TA 629
AV + + EN + A++G +G GKST +I+ + L+P TG L+ +I
Sbjct: 19 AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78
Query: 630 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKG-VKEELLESVVAEMVDEVGLADKV 688
D IR+ +G+ Q FP +++ +++ L G V + +V + V L D+V
Sbjct: 79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEV 138
Query: 689 NIVVRA----LSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGR 744
+++ LSGG +++L + + +V+++DEP S +DP S +LI+++K+
Sbjct: 139 KDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKY 198
Query: 745 IILLTTHSMDEAEELGDRIAIMANGSLKCCGSS 777
I++ TH+M +A + D A G L CG +
Sbjct: 199 TIIIVTHNMQQAARVSDYTAFFYMGDLVECGET 231
|
Length = 252 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 3e-18
Identities = 62/231 (26%), Positives = 117/231 (50%), Gaps = 26/231 (11%)
Query: 550 MKQQEVDGRC-IQIRKLHKVYATKRGNCCAVNSLQ---LTLYENQILALLGHNGAGKSTT 605
M+ + + R + K Y+ V L+ TL+ ++ ALLG NGAGKST
Sbjct: 1 MQTSDTTAPPLLCARSISKQYS-------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTL 53
Query: 606 ISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGV--CPQYDILFPELTVREHLEMFAVL 663
+ ++ G++PP +G + G LG+ PQ +LFP L+V+E++ +F +
Sbjct: 54 MKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENI-LFGLP 112
Query: 664 KGVK-EELLESVVAEMVDEVGL---ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 719
K + ++ ++A + ++ L A + + R + ++ L+ DS+++ILD
Sbjct: 113 KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILR-------GLMRDSRILILD 165
Query: 720 EPTSGMDPYSM-RLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANG 769
EPT+ + P RL ++ + + +G I+ +H + E +L DRI++M +G
Sbjct: 166 EPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDG 216
|
Length = 510 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.0 bits (213), Expect = 4e-18
Identities = 66/204 (32%), Positives = 114/204 (55%), Gaps = 16/204 (7%)
Query: 574 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTI---SMLVGLIPP--TTGDALVFGKNIT 628
G+ AV ++ L + +NQI A +G +G GKST + + L LIP G GKN+
Sbjct: 21 GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLY 80
Query: 629 A-DMD--EIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK---EELLESVV--AEMVD 680
A D+D E+R+ +G+ Q FP+ ++ +++ A + G K +EL+E + A + D
Sbjct: 81 APDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARINGYKGDMDELVERSLRQAALWD 139
Query: 681 EVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI 740
EV DK+ +LSGG +++L + A+ +V+++DEP S +DP S +L+ ++
Sbjct: 140 EV--KDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHEL 197
Query: 741 KKGRIILLTTHSMDEAEELGDRIA 764
K+ I++ TH+M +A + D A
Sbjct: 198 KEQYTIIIVTHNMQQAARVSDMTA 221
|
Length = 264 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 6e-18
Identities = 58/196 (29%), Positives = 105/196 (53%), Gaps = 7/196 (3%)
Query: 1492 SVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQF 1551
++Q GE +G +G GK+T L++ISG PT G + GK I ++P R ++ Q
Sbjct: 7 TIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQI-TEPGPDRMVVF---QN 62
Query: 1552 DALLEYLTVQEHLELYAR--IKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRK 1609
+LL +LTV+E++ L + +++ +V E + L + A K LSGG K++
Sbjct: 63 YSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQR 122
Query: 1610 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQAL 1669
+++A A+ P +++LDEP +D + + + E + ++ T V++ TH ++EA L
Sbjct: 123 VAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVT-VLMVTHDVDEALLL 181
Query: 1670 CTRIGIMVGGQLRCIG 1685
R+ ++ G IG
Sbjct: 182 SDRVVMLTNGPAANIG 197
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 6e-18
Identities = 61/240 (25%), Positives = 107/240 (44%), Gaps = 46/240 (19%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSL---TFSVQAGECFGFLGTNGAGKTTTLSMISGEE 1520
++ ++NL+K +P GK K V ++ +FS++ GE G +G +G GK+T +I G E
Sbjct: 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE 63
Query: 1521 YPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDD 1580
PT G GKDI K RR + V E ++
Sbjct: 64 EPTSGEILFEGKDITKLSKEERR---------------------------ERVLEL-LEK 95
Query: 1581 VVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1640
V L E L ++ P LSGG ++++ +A A+ +P +++ DEP + +D + +
Sbjct: 96 V---GLPEEFLYRY---PHE-LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQI 148
Query: 1641 WEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS-------PQHLKTR 1693
++ L G + +H ++ + + RI +M G++ IG P H T+
Sbjct: 149 LNLLKDLQEELG-LTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHPYTK 207
|
Length = 268 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 6e-18
Identities = 53/199 (26%), Positives = 101/199 (50%), Gaps = 12/199 (6%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT-ADMDEIRKG 637
+ L L + + +A++G +G+GKST + +L+GL P G L+ G ++ D+ +R+
Sbjct: 489 LEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQ 548
Query: 638 LGVCPQYDILFPELTVREHLEMFAV---LKGVKEELLESVVAEMVDEVGLADKVNIVVR- 693
+G Q LF ++RE++ + + + E + E ++ L + V
Sbjct: 549 VGYVLQDPFLFSG-SIRENIALGNPEATDEEIIEAAQLAGAHEFIEN--LPMGYDTPVGE 605
Query: 694 ---ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTT 750
LSGG +++L+L AL+ K+++LDE TS +DP + + Q + +I +GR +++
Sbjct: 606 GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIA 665
Query: 751 HSMDEAEELGDRIAIMANG 769
H DRI ++ G
Sbjct: 666 HR-LSTIRSADRIIVLDQG 683
|
Length = 709 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 6e-18
Identities = 62/177 (35%), Positives = 96/177 (54%), Gaps = 22/177 (12%)
Query: 590 QILALLGHNGAGKSTTISMLVGLIPPT--TGDALVFGKNITADMDEIRKGLGVCPQYDIL 647
+ILA+LG +G+GKST ++ L G I TG L + T +I K G Q DIL
Sbjct: 95 EILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT---KQILKRTGFVTQDDIL 151
Query: 648 FPELTVREHLEMFAVL-------KGVKEELLESVVAEMVDEVGLADKVNIVV-----RAL 695
+P LTVRE L ++L K K + ESV++E+ GL N ++ R +
Sbjct: 152 YPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISEL----GLTKCENTIIGNSFIRGI 207
Query: 696 SGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYS-MRLTWQLIKKIKKGRIILLTTH 751
SGG ++++S+ ++ + ++ILDEPTSG+D + RL L +KG+ I+ + H
Sbjct: 208 SGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMH 264
|
Length = 659 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 6e-18
Identities = 53/201 (26%), Positives = 99/201 (49%), Gaps = 9/201 (4%)
Query: 1485 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKA--AR 1542
A+H ++ + GE +G NGAGKTT L + G+ T G GKDI A R
Sbjct: 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMR 79
Query: 1543 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEF--DLLKHAKKPSF 1600
+ P+ + +TV+E+L + +++ ++ + E L + + +
Sbjct: 80 EAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQER---IKWVYELFPRLHERRIQRAG 136
Query: 1601 TLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTT 1660
T+SGG ++ L++ A++ P +++LDEPS G+ PI + +++ I +L R+ + L
Sbjct: 137 TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQL--REQGMTIFLVE 194
Query: 1661 HSMNEAQALCTRIGIMVGGQL 1681
+ N+A L R ++ G +
Sbjct: 195 QNANQALKLADRGYVLENGHV 215
|
Length = 237 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 6e-18
Identities = 54/214 (25%), Positives = 102/214 (47%), Gaps = 26/214 (12%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEIRK 636
++++ L + +++ ++G +G+GKST ++ P G LV G ++ AD +R+
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRR 76
Query: 637 GLGVCPQYDILF------------PELTVREHLEMFAVLKGVKEELLESVVA--EMVDEV 682
+GV Q ++LF P +++ +E A L G + + E +V E
Sbjct: 77 QVGVVLQENVLFNRSIRDNIALADPGMSMERVIEA-AKLAGAHDFISELPEGYDTIVGEQ 135
Query: 683 GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK 742
G LSGG ++++++ ALI + +++I DE TS +D S + + I
Sbjct: 136 GAG---------LSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA 186
Query: 743 GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
GR +++ H + + DRI +M G + GS
Sbjct: 187 GRTVIIIAHRLSTVKN-ADRIIVMEKGRIVEQGS 219
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 83.7 bits (208), Expect = 7e-18
Identities = 61/221 (27%), Positives = 112/221 (50%), Gaps = 12/221 (5%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
I ++NL K + + + +V+ GE +G +G+GK+T L I+ E P
Sbjct: 1 IEIKNLHKSFGD------FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDS 54
Query: 1525 GTAFIFGKDIRSDPKAARRL---IGYCPQFDALLEYLTVQEHLELYAR-IKGVAEYRMDD 1580
GT I G + D K L +G Q L +LTV E++ L +KG+++ ++
Sbjct: 55 GTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEE 114
Query: 1581 VVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1640
+E L + L A LSGG ++++++A A+ +P +++ DEP++ +DP +
Sbjct: 115 RALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEV 174
Query: 1641 WEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
+V+ L+ +G T V++ TH M A+ + R+ M G++
Sbjct: 175 LDVMKDLA-EEGMTMVVV-THEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 7e-18
Identities = 52/186 (27%), Positives = 95/186 (51%), Gaps = 9/186 (4%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD---MDEI 634
+ L ++LALLG NGAGKST + L GL+ P +G L+ G+ + + E
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLER 66
Query: 635 RKGLGVC---PQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIV 691
R+ +G+ P + V + + + G+ E +E V E + VG +
Sbjct: 67 RQRVGLVFQDPDDQLFAA--DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERP 124
Query: 692 VRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTT 750
LSGG K+++++ A+ V++LDEPT+G+DP ++++++ +G ++++T
Sbjct: 125 THCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVIST 184
Query: 751 HSMDEA 756
H +D A
Sbjct: 185 HDVDLA 190
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 7e-18
Identities = 54/188 (28%), Positives = 96/188 (51%), Gaps = 6/188 (3%)
Query: 1489 LTFSVQ--AGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIG 1546
+ F + GE +G +G+GK+T L++I+G E P G I G D+ + P A R +
Sbjct: 15 MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAP-PADRPVS 73
Query: 1547 YCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEK-LVEFDLLKHAKKPSFTLSGG 1605
Q + L +LTV++++ L G+ D +E L L K+ LSGG
Sbjct: 74 MLFQENNLFAHLTVEQNVGL-GLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGG 132
Query: 1606 NKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNE 1665
++++++A ++ D P+++LDEP +DP + M +++ L T V++ TH +
Sbjct: 133 ERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMT-VLMVTHQPED 191
Query: 1666 AQALCTRI 1673
A+ L R+
Sbjct: 192 AKRLAQRV 199
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 7e-18
Identities = 49/186 (26%), Positives = 93/186 (50%), Gaps = 8/186 (4%)
Query: 590 QILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEIRKGLGVCPQYDILF 648
+ +A++G GAGK+T I++L+ P G L+ G +I +R +GV Q LF
Sbjct: 30 ETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLF 89
Query: 649 PELTVREHLEMFAVLKGVKEELLESVVAEMVDEV-----GLADKVNIVVRALSGGMKRKL 703
T+ E++ + +E + + A D + G + LS G ++ L
Sbjct: 90 SG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLL 148
Query: 704 SLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRI 763
++ A++ D K++ILDE TS +D + +L + ++K+ KGR ++ H + + D+I
Sbjct: 149 AIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN-ADKI 207
Query: 764 AIMANG 769
++ +G
Sbjct: 208 LVLDDG 213
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 7e-18
Identities = 63/205 (30%), Positives = 103/205 (50%), Gaps = 8/205 (3%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMD---EI 634
A++ + L + + + L +LG NG+GKST + L+ P+ G V G + T+D + +I
Sbjct: 25 ALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLD-TSDEENLWDI 83
Query: 635 RKGLGVCPQY-DILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVR 693
R G+ Q D V E + G+ E + V E + +VG+ +
Sbjct: 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPH 143
Query: 694 ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTH 751
LSGG K+++++ L + +I DEPT+ +DP R IK++ K G I+L TH
Sbjct: 144 LLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITH 203
Query: 752 SMDEAEELGDRIAIMANGSLKCCGS 776
M+EA E DRI +M +G + G+
Sbjct: 204 YMEEAVE-ADRIIVMDSGKVVMEGT 227
|
Length = 280 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 8e-18
Identities = 59/219 (26%), Positives = 105/219 (47%), Gaps = 24/219 (10%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
+ + YPG + A+ ++F+V GE +G +GAGK+T L+++ G PT+
Sbjct: 322 LEFSGVSVAYPG-----RRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTE 376
Query: 1525 GTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVM 1583
G+ + G + D + R I + PQ L T+ E++ L ++ + + +
Sbjct: 377 GSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG-TIAENIRLARP--DASDAEIREALE 433
Query: 1584 EKLVEFD-LLKHAKKPSFT--------LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP 1634
D + + T LSGG ++L++A A + D P+++LDEP+ +D
Sbjct: 434 --RAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDA 491
Query: 1635 IAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRI 1673
+ + E + L+ QG+T V+L TH + A AL RI
Sbjct: 492 ETEAEVLEALRALA--QGRT-VLLVTHRLALA-ALADRI 526
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 8e-18
Identities = 61/230 (26%), Positives = 111/230 (48%), Gaps = 22/230 (9%)
Query: 561 QIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP---PTT 617
+I+ LH G + + LT+ E ++ A++G NG+GKST ++G P T
Sbjct: 5 EIKDLH---VEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGH-PKYEVTE 60
Query: 618 GDALVFGKNITA-DMDE-IRKGLGVCPQYDILFPELTVREHL--EMFAVLKGVKEEL-LE 672
G+ L G++I DE R G+ + QY + P +T + L M A
Sbjct: 61 GEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFI 120
Query: 673 SVVAEMVDEVGLADK-----VNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP 727
+ E + +GL ++ VN SGG K++ + L+ + K+ ILDEP SG+D
Sbjct: 121 KELKEKAELLGLDEEFLERYVNE---GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDI 177
Query: 728 YSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELG-DRIAIMANGSLKCCG 775
++++ + I ++ +GR +L+ TH + + D++ ++ +G + G
Sbjct: 178 DALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG 227
|
Length = 251 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 8e-18
Identities = 58/226 (25%), Positives = 104/226 (46%), Gaps = 19/226 (8%)
Query: 1479 RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDP 1538
+ ++ V + + G G LG NG+GK+T L +++G P GT + G D+
Sbjct: 10 SAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLS 69
Query: 1539 KAAR-RLIGYCPQFDALLEYLTVQE--------HLELYARIKGVAEYRMDD-VVMEKLVE 1588
+ AR R + Q LTV++ H L+A + D VV L
Sbjct: 70 RRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWA-----GDSPHDAAVVDRALAR 124
Query: 1589 FDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLS 1648
+L A + TLSGG ++++ VA A+ +P +++LDEP+ +D + + E ++ +
Sbjct: 125 TELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLD-VRAQL--ETLALVR 181
Query: 1649 TRQG-KTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693
V+ H +N A + C + ++ GG++ G P+ + T
Sbjct: 182 ELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTP 227
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 9e-18
Identities = 61/210 (29%), Positives = 104/210 (49%), Gaps = 35/210 (16%)
Query: 584 LTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCP- 642
TL I AL G +G+GK++ I+M+ GL P G + G+ + D KG+ + P
Sbjct: 19 FTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLV-DA---EKGIFLPPE 74
Query: 643 --------QYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRA 694
Q LFP TVR +L + + K ++ + ++V +G+ ++
Sbjct: 75 KRRIGYVFQDARLFPHYTVRGNLR-YGMWKSMRAQF-----DQLVALLGIEHLLDRYPGT 128
Query: 695 LSGGMKRKLSLGIALIGDSKVVILDEPTSGMD--------PYSMRLTWQLIKKIKKGRI- 745
LSGG K+++++G AL+ +++++DEP + +D PY RL + I
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLR-------DEINIP 181
Query: 746 ILLTTHSMDEAEELGDRIAIMANGSLKCCG 775
IL +HS+DE L DR+ ++ NG +K G
Sbjct: 182 ILYVSHSLDEVLRLADRVVVLENGKVKASG 211
|
Length = 352 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 9e-18
Identities = 57/217 (26%), Positives = 113/217 (52%), Gaps = 11/217 (5%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+++ +L+ Y+ A+ + + + + ++ A+LG NGAGKST L G++ P++G
Sbjct: 6 LKVEELNYNYSD---GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGR 62
Query: 620 ALVFGKNI---TADMDEIRKGLGVCPQY--DILFPELTVREHLEMFAVLKGVKEELLESV 674
L GK I + ++R+ +G+ Q + LF +V + + AV + E+ +
Sbjct: 63 ILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLF-SASVYQDVSFGAVNLKLPEDEVRKR 121
Query: 675 VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTW 734
V + G+ + LS G K+++++ L+ + KV++LDEPT+G+DP +
Sbjct: 122 VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIM 181
Query: 735 QLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANG 769
+L+ +++K G I++ TH +D D + +M G
Sbjct: 182 KLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEG 218
|
Length = 283 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 1e-17
Identities = 56/212 (26%), Positives = 109/212 (51%), Gaps = 10/212 (4%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+QI L+ Y K A+ + LTL ++L +LG +G GK+T ++++ G +P G
Sbjct: 2 LQISHLYADYGGKP----ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGS 57
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 679
+ GK + E GV Q + L P V++++ L GV++ + +M+
Sbjct: 58 ITLDGKPVEGPGAE----RGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQML 113
Query: 680 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 739
+VGL + LSGG ++++ + AL + ++++LDEP +D ++ L+ K
Sbjct: 114 KKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLK 173
Query: 740 I--KKGRIILLTTHSMDEAEELGDRIAIMANG 769
+ + G+ +LL TH ++EA + + +++ G
Sbjct: 174 LWQETGKQVLLITHDIEEAVFMATELVLLSPG 205
|
Length = 255 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 88.7 bits (221), Expect = 1e-17
Identities = 65/212 (30%), Positives = 107/212 (50%), Gaps = 21/212 (9%)
Query: 577 CAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIR 635
+ L L + + +ALLG G GKST + +L P G+ L+ G+ I +R
Sbjct: 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALR 413
Query: 636 KGLGVCPQYDILFPELTVREHL----------EMFAVLKGVK-EELLESVVAEMVDEVGL 684
+ + V Q LF T+R++L + VL+ V E+LLE D+ GL
Sbjct: 414 QAISVVSQRVHLFSA-TLRDNLLLAAPNASDEALIEVLQQVGLEKLLE-------DDKGL 465
Query: 685 ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGR 744
+ R LSGG +R+L + AL+ D+ +++LDEPT G+D + R +L+ + + +
Sbjct: 466 NAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNK 525
Query: 745 IILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
+L+ TH + E+ DRI +M NG + G+
Sbjct: 526 TVLMITHRLTGLEQF-DRICVMDNGQIIEQGT 556
|
Length = 574 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.1 bits (213), Expect = 1e-17
Identities = 63/247 (25%), Positives = 117/247 (47%), Gaps = 29/247 (11%)
Query: 555 VDGRCIQIRKLHKVYATKRGN-CCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLI 613
D ++++ L+ V+ K+ N A+N++ T +N+I ++G++G+GKST ++ GLI
Sbjct: 17 SDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLI 76
Query: 614 PPTTGDALVFGKNITADMD-----------------EIRKGLGVCPQYDILFPEL----- 651
G V I + E+R+ + + Q FPE
Sbjct: 77 KSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQ----FPEYQLFKD 132
Query: 652 TVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADK-VNIVVRALSGGMKRKLSLGIALI 710
T+ + + V GVK+ + + ++++GL D + LSGG KR++++ L
Sbjct: 133 TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILA 192
Query: 711 GDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK-GRIILLTTHSMDEAEELGDRIAIMANG 769
+++I DEPT+G+DP QLI K + + + TH+M+ E+ D + +M G
Sbjct: 193 IQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252
Query: 770 SLKCCGS 776
+ G+
Sbjct: 253 KILKTGT 259
|
Length = 320 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 1e-17
Identities = 66/219 (30%), Positives = 111/219 (50%), Gaps = 18/219 (8%)
Query: 571 TKR-GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT- 628
TKR G ++ L ++ + +AL+G +G+GKST + +L+ L P G V G+ +
Sbjct: 7 TKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYH 66
Query: 629 ----------AD---MDEIRKGLGVCPQYDILFPELTVREHLEMFAVL-KGVKEELLESV 674
AD + ++R +G+ Q LFP TV +++ VL G+ E
Sbjct: 67 MPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKR 126
Query: 675 VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTW 734
E++D VGLADK + + LSGG ++++++ AL KV++ DE TS +DP +
Sbjct: 127 AMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVL 186
Query: 735 QLIKKI--KKGRIILLTTHSMDEAEELGDRIAIMANGSL 771
+I+++ + +LL TH M A E DR+ G +
Sbjct: 187 NVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRI 225
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 1e-17
Identities = 64/209 (30%), Positives = 107/209 (51%), Gaps = 11/209 (5%)
Query: 1491 FSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARRLIGYCP 1549
SV+ G G +G NGAGKTT L I+G PT GT + G D+ + +AA R + P
Sbjct: 24 LSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVP 83
Query: 1550 QFDALLEYLTVQEHLEL-----YARIKGVAEYRMDDVVMEKLVE-FDLLKHAKKPSFTLS 1603
Q +L V++ +E+ +R E D +E+ +E + + A +P +LS
Sbjct: 84 QDTSLSFEFDVRQVVEMGRTPHRSRFDTWTE--TDRAAVERAMERTGVAQFADRPVTSLS 141
Query: 1604 GGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSM 1663
GG ++++ +A A+ P+++LDEP+ +D + E++ RL GKTAV H +
Sbjct: 142 GGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRL-VDDGKTAVA-AIHDL 199
Query: 1664 NEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692
+ A C + ++ G++R G P + T
Sbjct: 200 DLAARYCDELVLLADGRVRAAGPPADVLT 228
|
Length = 402 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.3 bits (206), Expect = 2e-17
Identities = 58/192 (30%), Positives = 106/192 (55%), Gaps = 8/192 (4%)
Query: 588 ENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI----TADMDEIR-KGLGVCP 642
E +++A++G +G+GKST + +L GL PT+GD + G+ + +A E+R + LG
Sbjct: 34 EGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIY 93
Query: 643 QYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRK 702
Q+ L P+ T E++ M ++ K + S EM+ VGL + N LSGG +++
Sbjct: 94 QFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQR 153
Query: 703 LSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI--KKGRIILLTTHSMDEAEELG 760
+++ AL+ + ++V+ DEPT +D + +QL+ ++ +G L+ TH + A+ +
Sbjct: 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM- 212
Query: 761 DRIAIMANGSLK 772
R M +G L
Sbjct: 213 SRQLEMRDGRLT 224
|
Length = 233 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 2e-17
Identities = 51/195 (26%), Positives = 85/195 (43%), Gaps = 11/195 (5%)
Query: 1481 DAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKA 1540
D + L+F++ AGE G NG+GKTT L +++G P G + G + +
Sbjct: 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDS 70
Query: 1541 ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSF 1600
R + Y + L+V E+L + D+ V E L L +P
Sbjct: 71 IARGLLYLGHAPGIKTTLSVLENLRFWHADHS------DEQVEEALARVGLNGFEDRPVA 124
Query: 1601 TLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIA-KRFMWEVISRLSTRQGKTAVILT 1659
LS G +R++++A ++ P+ ILDEP+T +D RF + V+LT
Sbjct: 125 QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHC---ARGGMVVLT 181
Query: 1660 TH-SMNEAQALCTRI 1673
TH + ++A +
Sbjct: 182 THQDLGLSEAGAREL 196
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 2e-17
Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 41/197 (20%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
+ + N+ YP + + +L+ ++ GE LG +G+GK+T L +++G+ P
Sbjct: 1 LSINNVSFSYPE----QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQ 56
Query: 1525 GTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVME 1584
G + G + KA LI Q + +L D +
Sbjct: 57 GEITLDGVPVSDLEKALSSLISVLNQ----------RPYL-------------FDTTLRN 93
Query: 1585 KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVI 1644
L SGG +++L++A ++ D PIV+LDEP+ G+DPI +R + +I
Sbjct: 94 NLGR------------RFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLI 141
Query: 1645 SRLSTRQGKTAVILTTH 1661
+ KT + +T H
Sbjct: 142 --FEVLKDKTLIWITHH 156
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.2 bits (208), Expect = 2e-17
Identities = 70/228 (30%), Positives = 116/228 (50%), Gaps = 24/228 (10%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIPP- 615
++++ L Y KR AVN + + + ++ + AL+G +G GKST +I+ + LIP
Sbjct: 22 LEVKDLSIYYGEKR----AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSA 77
Query: 616 -TTGDALVFGKNITAD---MDEIRKGLGVCPQYDILFPELTVRE--HLEMFA------VL 663
+ G+ L G NI + +R+ +G+ Q FP+ H +A VL
Sbjct: 78 RSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVL 137
Query: 664 KGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTS 723
+ EE L A + DEV D+++ +LSGG +++L + L V++LDEP S
Sbjct: 138 DEIVEESLTK--AALWDEV--KDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPAS 193
Query: 724 GMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 771
+DP S +LI ++K+ I++ TH+M +A + DR A NG L
Sbjct: 194 ALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDL 241
|
Length = 268 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 3e-17
Identities = 62/231 (26%), Positives = 117/231 (50%), Gaps = 23/231 (9%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMIS--GEEY 1521
II + N Y K AV ++T + + +G +G GKTT L I+ +
Sbjct: 3 IIEIENFSAYY------GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHI 56
Query: 1522 P---TDGTAFIFGKDI---RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGV-A 1574
P +G + G+DI + D R+ +G Q +++ +++ RI GV +
Sbjct: 57 PGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKS 115
Query: 1575 EYRMDDVVMEKLVE---FDLLKHA-KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPST 1630
++++D +V E L + +D +K KP LSGG +++L +A A+ +P +++LDEP++
Sbjct: 116 KHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTS 175
Query: 1631 GMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
+DPIA + + +++ LS +++ TH++ +A + I M G+L
Sbjct: 176 ALDPIATQRIEKLLEELSE---NYTIVIVTHNIGQAIRIADYIAFMYRGEL 223
|
Length = 250 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 83.3 bits (206), Expect = 3e-17
Identities = 62/234 (26%), Positives = 112/234 (47%), Gaps = 20/234 (8%)
Query: 1463 AIIYLRNLRKVYPGG----KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG 1518
+++ +R++ Y G + A V + +++ S++ GE G LG +G GK+T ++ G
Sbjct: 1 SLLEVRDVTHTYRTGGLFGAKQRAPV-LTNVSLSIEEGETVGLLGRSGCGKSTLARLLLG 59
Query: 1519 EEYPTDGTAFIFGKDI----RSDPKAARRLIGYCPQ--FDALLEYLTVQ----EHLELYA 1568
E P GT G+D+ R +A RR + Q A+ +TV+ E L
Sbjct: 60 LEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT 119
Query: 1569 RIKGVAEYRMDDVVMEKLVEFDL-LKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDE 1627
+ E + E L L + A K LSGG +++++A A+ P +++LDE
Sbjct: 120 SLD---ESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDE 176
Query: 1628 PSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
+ +D + + + E++ +L G TA + TH + Q+ C R+ +M GQ+
Sbjct: 177 AVSNLDMVLQAVILELLRKLQQAFG-TAYLFITHDLRLVQSFCQRVAVMDKGQI 229
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 3e-17
Identities = 53/209 (25%), Positives = 100/209 (47%), Gaps = 23/209 (11%)
Query: 582 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEI-----RK 636
TL + A+ G +G+GK+T I ++ GL P G+ ++ G+ + I ++
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 637 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALS 696
+G Q LFP L+VR +L +K + +++ +G+ + + LS
Sbjct: 76 RIGYVFQEARLFPHLSVRGNLRYG--MKRARPSERRISFERVIELLGIGHLLGRLPGRLS 133
Query: 697 GGMKRKLSLGIALIGDSKVVILDEPTSGMD--------PYSMRLTWQLIKKIKKGRI-IL 747
GG K+++++G AL+ +++++DEP + +D PY RL + I IL
Sbjct: 134 GGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF-------GIPIL 186
Query: 748 LTTHSMDEAEELGDRIAIMANGSLKCCGS 776
+HS+ E L DR+ ++ +G + G
Sbjct: 187 YVSHSLQEVLRLADRVVVLEDGRVAAAGP 215
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 3e-17
Identities = 55/212 (25%), Positives = 96/212 (45%), Gaps = 39/212 (18%)
Query: 584 LTLYENQILALLGHNGAGKSTTISMLVGLIP---PTTGDALVFGKNITA-DMDEI-RKGL 638
LT+ + ++ AL+G NG+GKST ++G P T G+ L G++IT +E R G+
Sbjct: 21 LTIKKGEVHALMGPNGSGKSTLAKTIMG-HPKYEVTEGEILFKGEDITDLPPEERARLGI 79
Query: 639 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGG 698
+ QY P + + L+ V E SGG
Sbjct: 80 FLAFQYPPEIPGVKNAD------FLRYVNE-------------------------GFSGG 108
Query: 699 MKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAE 757
K++ + L+ + + ILDEP SG+D ++RL ++I K++ +G+ +L+ TH +
Sbjct: 109 EKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168
Query: 758 EL-GDRIAIMANGSLKCCGSSLFLKHQYGVGY 788
+ DR+ ++ +G + G GY
Sbjct: 169 YIKPDRVHVLYDGRIVKSGDKELALEIEKKGY 200
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 3e-17
Identities = 59/213 (27%), Positives = 110/213 (51%), Gaps = 18/213 (8%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP----TTGDALVFGKNITADMDE 633
V L L+L ++LAL+G +G+GKS T ++GL+PP T+G+ L+ G+ +
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLP--LS 58
Query: 634 IRKGLGVC-----PQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKV 688
IR G + P+ P T+ H G + +++ E ++ VGL D
Sbjct: 59 IR-GRHIATIMQNPR-TAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPE 116
Query: 689 NIVVR---ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--G 743
++ + LSGGM +++ + +AL+ + +I DEPT+ +D + +L++++++ G
Sbjct: 117 EVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFG 176
Query: 744 RIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
ILL TH + + D +A+M +G + G+
Sbjct: 177 TGILLITHDLGVVARIADEVAVMDDGRIVERGT 209
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 3e-17
Identities = 64/213 (30%), Positives = 112/213 (52%), Gaps = 2/213 (0%)
Query: 1478 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD 1537
KR + + +L +++ G LG +G GKTT L +++G E PT+G FI G+D+ +
Sbjct: 14 KRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDV-TH 72
Query: 1538 PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKK 1597
+R I Q AL ++++ E++ ++ GV + V E L DL +
Sbjct: 73 RSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDR 132
Query: 1598 PSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVI 1657
+SGG ++++++A A+I P +++ DEP + +D +R M E I L + T+ +
Sbjct: 133 YVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITS-L 191
Query: 1658 LTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
TH +EA A+ + +M G++ IGSPQ L
Sbjct: 192 YVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
Length = 351 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 4e-17
Identities = 66/234 (28%), Positives = 113/234 (48%), Gaps = 11/234 (4%)
Query: 1461 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE 1520
N +I +N+ Y + S K+A+ + V+ GE LG NG+GK+T ++
Sbjct: 1 MNEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALL 60
Query: 1521 YPTDGTAFIFGKDIRSDPKAA---RRLIGYCPQF-DALLEYLTVQEHLELYARIKGVAEY 1576
P++G ++ G D SD + R G Q D + V+E + G+
Sbjct: 61 IPSEGKVYVDGLDT-SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPE 119
Query: 1577 RMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVA--IAMIGDPPIVILDEPSTGMDP 1634
+ + V E L + + ++ + LSGG K+++++A +AM P +I DEP+ +DP
Sbjct: 120 EIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAM--RPECIIFDEPTAMLDP 177
Query: 1635 IAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1688
+R + I L+ + G T +IL TH M EA RI +M G++ G+P+
Sbjct: 178 SGRREVVNTIKELNKKYGIT-IILITHYMEEA-VEADRIIVMDSGKVVMEGTPK 229
|
Length = 280 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 4e-17
Identities = 59/230 (25%), Positives = 106/230 (46%), Gaps = 21/230 (9%)
Query: 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLT---FSVQAGECFGFLGTNGAGKTTTLSMISGE 1519
II + +L K G+ + L V+ GE +G +G+GK+T L++++G
Sbjct: 5 NIIEVHHLSKTVGQGEGE-----LSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGL 59
Query: 1520 EYPTDGTAFIFGKDIRS---DPKAA--RRLIGYCPQFDALLEYLTVQEHLELYARIKGVA 1574
+ P+ G + G+ + D +AA R +G+ Q L+ LT E++ L ++G +
Sbjct: 60 DDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGES 119
Query: 1575 EYRMDDVVMEKLVEFDL---LKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTG 1631
L L L H LSGG ++++++A A G P ++ DEP+
Sbjct: 120 SADSRAGAKALLEAVGLGKRLTHYPA---QLSGGEQQRVALARAFAGRPDVLFADEPTGN 176
Query: 1632 MDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
+D + +++ L+ +G T ++L TH A A C R + G+L
Sbjct: 177 LDRATGDKIADLLFALNRERG-TTLVLVTHDPQLA-ARCDRQLRLRSGRL 224
|
Length = 228 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 4e-17
Identities = 56/200 (28%), Positives = 98/200 (49%), Gaps = 9/200 (4%)
Query: 1470 LRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFI 1529
L+ V G + +++++FS++AGE G +G GK+T L +++ PT GT
Sbjct: 10 LQNV---GYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLF 66
Query: 1530 FGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVE 1588
G+DI + P+ R+ + YC Q L TV ++L +I+ + ++ L
Sbjct: 67 EGEDISTLKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRNQQPDP--AIFLDDLER 123
Query: 1589 FDLLKHA-KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRL 1647
F L K LSGG K+++S+ + P +++LDE ++ +D K + E+I R
Sbjct: 124 FALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRY 183
Query: 1648 STRQGKTAVILTTHSMNEAQ 1667
R+ AV+ TH +E
Sbjct: 184 -VREQNIAVLWVTHDKDEIN 202
|
Length = 225 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.1 bits (205), Expect = 4e-17
Identities = 69/240 (28%), Positives = 125/240 (52%), Gaps = 26/240 (10%)
Query: 561 QIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTI---SMLVGLIPPT- 616
++ KL+ Y G A+ ++ + ++E Q+ AL+G +G GKST + + + L P
Sbjct: 18 EVNKLNFYY----GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNH 73
Query: 617 -TGDALVFGKNI-----TADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK--- 667
G+ ++ N+ D E+R + + Q FP+ ++ E++ ++GVK
Sbjct: 74 YEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRS 132
Query: 668 --EELLESVV--AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTS 723
EE +E+ + A + DEV D++ + LSGG +++L + AL D ++++ DEPTS
Sbjct: 133 ILEERVENALRNAALWDEV--KDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTS 190
Query: 724 GMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSS--LFLK 781
+DP + +LI +K IL+ TH+M +A + D A M G L G++ +F+K
Sbjct: 191 ALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIFIK 250
|
Length = 265 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 5e-17
Identities = 65/219 (29%), Positives = 108/219 (49%), Gaps = 16/219 (7%)
Query: 1484 VAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDI--RSDPKAA 1541
AV ++F V+AGE G G G G++ + ISG P G + GKD+ R P+
Sbjct: 272 TAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRER 331
Query: 1542 RRL-IGYCP---QFDALLEYLTVQEHLEL-------YARIKGVAEYRMDDVVMEKLVEFD 1590
RRL + Y P L+ L++ E+L L ++R + + E + EFD
Sbjct: 332 RRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFD 391
Query: 1591 LLKHAKK-PSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLST 1649
+ + P+ +LSGGN++KL +A + P ++I +P+ G+D A F+ E + L
Sbjct: 392 VRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERL--LEL 449
Query: 1650 RQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1688
R AV+L + ++E L RI ++ G++ I P+
Sbjct: 450 RDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPE 488
|
Length = 501 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 5e-17
Identities = 71/246 (28%), Positives = 116/246 (47%), Gaps = 20/246 (8%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
I L + Y A A+ +T GE LG +GAGK++ L +++ E P
Sbjct: 3 IQLNGINCFY------GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRS 56
Query: 1525 GTAFIFGK--DIRSDP--KAARRL---IGYCPQFDALLEYLTVQEHL-ELYARIKGVAEY 1576
GT I G D P KA R L +G Q L +LTVQE+L E R+ G+++
Sbjct: 57 GTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKD 116
Query: 1577 RMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIA 1636
+ + L L +A + LSGG ++++++A A++ +P +++ DEP+ +DP
Sbjct: 117 QALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEI 176
Query: 1637 KRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL---KT- 1692
+ +I L+ G T VI+ TH + A+ +R+ M G + G +T
Sbjct: 177 TAQIVSIIKELA-ETGITQVIV-THEVEVARKTASRVVYMENGHIVEQGDASCFTEPQTE 234
Query: 1693 RFGNFL 1698
F N+L
Sbjct: 235 AFKNYL 240
|
Length = 242 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 6e-17
Identities = 50/197 (25%), Positives = 101/197 (51%), Gaps = 7/197 (3%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEIRKG 637
+N++ L++ + +A+ G +G GKST + ++ LI PT+G L G+++ T + R+
Sbjct: 19 LNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQ 78
Query: 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKV-NIVVRALS 696
+ C Q LF + TV ++L ++ + + + +++ L D + + LS
Sbjct: 79 VSYCAQTPALFGD-TVEDNLIFPWQIRNRRPD--RAAALDLLARFALPDSILTKNITELS 135
Query: 697 GGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI--KKGRIILLTTHSMD 754
GG K++++L L K+++LDE TS +D + R ++I + ++ +L TH D
Sbjct: 136 GGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKD 195
Query: 755 EAEELGDRIAIMANGSL 771
+A D++ + G
Sbjct: 196 QAIRHADKVITLQPGHA 212
|
Length = 223 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 6e-17
Identities = 58/220 (26%), Positives = 110/220 (50%), Gaps = 15/220 (6%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I I + K Y TK ++ + L + + I +++G NGAGKST +SM+ L+ +G+
Sbjct: 2 ITIENVSKSYGTKV----VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGE 57
Query: 620 ALVFGKNITA-DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVL---KGVKEELLESVV 675
+ G +T+ E+ K L + Q + + LTVR+ L F +G + ++
Sbjct: 58 ITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRD-LVGFGRFPYSQGRLTKEDRRII 116
Query: 676 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYS----MR 731
E ++ + L D + + LSGG +++ + + L D+ V+LDEP + +D M+
Sbjct: 117 NEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMK 176
Query: 732 LTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 771
+ +L ++ K +++L H ++ A D I + NG +
Sbjct: 177 ILRRLADELGKTIVVVL--HDINFASCYSDHIVALKNGKV 214
|
Length = 252 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 6e-17
Identities = 79/262 (30%), Positives = 129/262 (49%), Gaps = 25/262 (9%)
Query: 1467 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1526
LRN+ K Y D ++ + + GE F+G +G GK+T L MI+G E T G
Sbjct: 6 LRNVTKAY-----GDVVISKD-INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGD 59
Query: 1527 AFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKL 1586
FI K + +D A R +G Q AL +L+V E++ ++ G + ++ V ++
Sbjct: 60 LFIGEKRM-NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRV-NQV 117
Query: 1587 VEFDLLKH--AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVI 1644
E L H +KP LSGG ++++++ ++ +P + +LDEP + +D + M I
Sbjct: 118 AEVLQLAHLLDRKPK-ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEI 176
Query: 1645 SRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL----KTRF------ 1694
SRL R G+T +I TH EA L +I ++ G++ +G P L RF
Sbjct: 177 SRLHKRLGRT-MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRFVAGFIG 235
Query: 1695 ---GNFLELEVKPTEVSSVDLE 1713
NFL ++V T + V +E
Sbjct: 236 SPKMNFLPVKVTATAIEQVQVE 257
|
Length = 369 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.6 bits (213), Expect = 7e-17
Identities = 52/201 (25%), Positives = 96/201 (47%), Gaps = 12/201 (5%)
Query: 584 LTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD--MDEIRKGLGVC 641
T+ +IL + G GAG++ L G P ++G+ L+ GK + D I+ G+
Sbjct: 280 FTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYV 339
Query: 642 P---QYDILFPELTVRE-----HLEMFAVLKGVKEELLESVVAEMVDEVGL-ADKVNIVV 692
P + + L ++++ E L F+ + ++ + + + +
Sbjct: 340 PEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI 399
Query: 693 RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-KKGRIILLTTH 751
LSGG ++K+ L L D KV+ILDEPT G+D + ++LI+++ +G+ IL+ +
Sbjct: 400 GTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISS 459
Query: 752 SMDEAEELGDRIAIMANGSLK 772
+ E L DRI +M G +
Sbjct: 460 ELPELLGLSDRILVMREGRIV 480
|
Length = 500 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 7e-17
Identities = 57/216 (26%), Positives = 107/216 (49%), Gaps = 14/216 (6%)
Query: 570 ATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA 629
+ + G+ ++ + L++ E ++ L+G NGAGK+T + + G + PT G LV G ++ A
Sbjct: 10 SVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEA 69
Query: 630 -DMDEIRKGLGVCPQYDILFPELTVREHLEM--------FAVLKGVKEELLESVVAEMVD 680
+ + PQ L E VR+ +EM F E + V ++
Sbjct: 70 LSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTW----TETDRAAVERAME 125
Query: 681 EVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK- 739
G+A + V +LSGG ++++ L AL + V++LDEPT+ +D T +L+++
Sbjct: 126 RTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRL 185
Query: 740 IKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 775
+ G+ + H +D A D + ++A+G ++ G
Sbjct: 186 VDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221
|
Length = 402 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 9e-17
Identities = 62/217 (28%), Positives = 108/217 (49%), Gaps = 23/217 (10%)
Query: 574 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT--ADM 631
G AVN++ L + E +I++L+G NGAGK+T + L G PT G L+ G++I
Sbjct: 16 GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGH 75
Query: 632 DEIRKGLGVCPQYDILFPELTVREHLEMFA--------VLKGV---------KEELLESV 674
R G+ Q+ LF E+TV E+L + A + G+ + E L+
Sbjct: 76 QIARMGVVRTFQHVRLFREMTVIENL-LVAQHQQLKTGLFSGLLKTPAFRRAESEALDR- 133
Query: 675 VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTW 734
A ++ VGL + N L+ G +R+L + ++ ++++LDEP +G++P +
Sbjct: 134 AATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELD 193
Query: 735 QLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANG 769
+LI +++ +LL H M + DRI ++ G
Sbjct: 194 ELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQG 230
|
Length = 255 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.9 bits (202), Expect = 9e-17
Identities = 60/212 (28%), Positives = 110/212 (51%), Gaps = 16/212 (7%)
Query: 574 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLI-----PPTTGDALVFGKNI- 627
G ++ + L + +N I AL+G +G+GKST + + LI +G+ + G++I
Sbjct: 14 GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIF 73
Query: 628 TADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV---KEELLESV-----VAEMV 679
D+ E+R+ + + Q P L++ E++ + L + K+EL E V A++
Sbjct: 74 KMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLW 133
Query: 680 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 739
DEV D+++ LSGG +++L + AL +V++ DEPT+ +DP + L +
Sbjct: 134 DEV--KDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLE 191
Query: 740 IKKGRIILLTTHSMDEAEELGDRIAIMANGSL 771
+KK I+L TH +A + D +A + G +
Sbjct: 192 LKKDMTIVLVTHFPQQAARISDYVAFLYKGQI 223
|
Length = 250 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 1e-16
Identities = 66/223 (29%), Positives = 117/223 (52%), Gaps = 22/223 (9%)
Query: 1482 AKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS----- 1536
+ A++ + S+ +G +G G+GK+T L ++G PT GT I + I +
Sbjct: 19 ERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNK 78
Query: 1537 DPKAARRLIGYCPQF-DALLEYLTVQEHLELYARIKGV----AEYRMDDVVMEKLV--EF 1589
K R+ +G QF + L TV++ + GV A+ + +++ +LV
Sbjct: 79 KLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMI--ELVGLPE 136
Query: 1590 DLLKHAKKPSFTLSGGNKRKLSVA--IAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRL 1647
+LL A+ P F LSGG R++++A +AM +P +++LDEP+ G+DP ++ M E+ +L
Sbjct: 137 ELL--ARSP-FELSGGQMRRVAIAGVLAM--EPEVLVLDEPTAGLDPKGRKEMMEMFYKL 191
Query: 1648 STRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
+G T +L THSM +A +I +M G + G+P+ +
Sbjct: 192 HKEKGLT-TVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREI 233
|
Length = 290 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 1e-16
Identities = 54/244 (22%), Positives = 99/244 (40%), Gaps = 58/244 (23%)
Query: 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1522
++I L NL Y + + +++ ++ GE G +G NGAGK+T L +++GE P
Sbjct: 2 SMITLENLSLAYGD------RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP 55
Query: 1523 TDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV 1582
G PK R +GY Q L TV +++ +++
Sbjct: 56 DSGEVTR--------PKGLR--VGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEA- 104
Query: 1583 MEKLVEFDLLKHAK------------------------------KPSFTLSGGNKRKLSV 1612
L + D A+ +P +LSGG +R++++
Sbjct: 105 YALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVAL 164
Query: 1613 AIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHS---MNEAQAL 1669
A A++ +P +++LDEP+ +D + W + L G VI+ +H ++ +
Sbjct: 165 ARALLEEPDLLLLDEPTNHLD-LESI-EW-LEDYLKRYPG--TVIVVSHDRYFLDN---V 216
Query: 1670 CTRI 1673
T I
Sbjct: 217 ATHI 220
|
Length = 530 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 1e-16
Identities = 60/209 (28%), Positives = 115/209 (55%), Gaps = 14/209 (6%)
Query: 571 TKR-GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT- 628
+K G ++++ L + + +++ ++G +G+GKST + + L T+GD +V G +
Sbjct: 8 SKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVND 67
Query: 629 --ADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLK--GVKEELLESVVAEMVDEVGL 684
D IR+ G+ Q LFP LT E++ MF L+ G +E E E++ +VGL
Sbjct: 68 PKVDERLIRQEAGMVFQQFYLFPHLTALENV-MFGPLRVRGASKEEAEKQARELLAKVGL 126
Query: 685 ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK--- 741
A++ + LSGG ++++++ AL K+++ DEPTS +DP L +++K ++
Sbjct: 127 AERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDP---ELRHEVLKVMQDLA 183
Query: 742 -KGRIILLTTHSMDEAEELGDRIAIMANG 769
+G +++ TH + AE++ R+ + G
Sbjct: 184 EEGMTMVIVTHEIGFAEKVASRLIFIDKG 212
|
Length = 240 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.6 bits (201), Expect = 1e-16
Identities = 62/224 (27%), Positives = 113/224 (50%), Gaps = 24/224 (10%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKST------TISMLVGLI 613
I+++ L Y T + A+ + + +Y N++ A++G +G GKST IS L G +
Sbjct: 8 IKVKDLSFYYNTSK----AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPV 63
Query: 614 PPTTGDALVFGKNI---TADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK--- 667
G FG+NI +++ +R+ +G+ Q FP +++ E++ +
Sbjct: 64 K-VEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQA 121
Query: 668 --EELLESVV--AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTS 723
+E++ES + A + EV DK+N LSGG +++L + AL KV+++DEP S
Sbjct: 122 DLDEIVESALKGAALWQEV--KDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCS 179
Query: 724 GMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMA 767
+DP + +LI ++ I + TH+M +A + D A +
Sbjct: 180 ALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFS 223
|
Length = 259 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 2e-16
Identities = 54/179 (30%), Positives = 90/179 (50%), Gaps = 20/179 (11%)
Query: 582 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVC 641
L TL +++ + G NGAGK++ + +L GL P G+ L G+ I DE
Sbjct: 20 LSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDE-------- 71
Query: 642 PQYDILF--------PELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVR 693
D+L+ ELT E+L + L G + + E + +VGLA ++ VR
Sbjct: 72 YHQDLLYLGHQPGIKTELTALENLRFYQRLHG---PGDDEALWEALAQVGLAGFEDVPVR 128
Query: 694 ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSM-RLTWQLIKKIKKGRIILLTTH 751
LS G +R+++L + + + ILDEP + +D + RL L + ++G +++LTTH
Sbjct: 129 QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTH 187
|
Length = 204 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 2e-16
Identities = 62/252 (24%), Positives = 120/252 (47%), Gaps = 34/252 (13%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY--P 1522
I +N+ YP R D + + L+ ++ G+ +G++G GK+T +S++ E + P
Sbjct: 1 IEFKNVSFRYP--SRPDVPI-LKGLSLTIPPGKTVALVGSSGCGKSTVVSLL--ERFYDP 55
Query: 1523 TDGTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRM--- 1578
T G + G DIR + + R IG Q + +L T+ E++ Y + E
Sbjct: 56 TSGEILLDGVDIRDLNLRWLRSQIGLVSQ-EPVLFDGTIAENI-RYGKPDATDEEVEEAA 113
Query: 1579 -----DDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMD 1633
D +M +D L + LSGG K+++++A A++ +P I++LDE ++ +D
Sbjct: 114 KKANIHDFIMSLPDGYDTLVGER--GSQLSGGQKQRIAIARALLRNPKILLLDEATSALD 171
Query: 1634 PIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCT-----RIGIMVGGQLRCIGSPQ 1688
+++ + E + R +G+T +++ A L T I ++ GQ+ G+
Sbjct: 172 AESEKLVQEALDRA--MKGRTTIVI-------AHRLSTIRNADLIAVLQNGQVVEQGTHD 222
Query: 1689 HLKTRFGNFLEL 1700
L + G + +L
Sbjct: 223 ELMAQKGVYAKL 234
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.9 bits (199), Expect = 3e-16
Identities = 79/275 (28%), Positives = 137/275 (49%), Gaps = 16/275 (5%)
Query: 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG--E 1519
N I+ + NL V+ K SD ++ ++FS+ GE +G NG+GK+TT +I G E
Sbjct: 2 NKILEVENL--VFKYEKESDVN-QLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE 58
Query: 1520 EYPTDGTAFIFGKDIRSDPK-AARRLIGYCPQF-DALLEYLTVQEHLELYARIKGVAEYR 1577
E+ +G I G+ + ++ RR IG Q D TV++ + +G+
Sbjct: 59 EF--EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREE 116
Query: 1578 MDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK 1637
M V E L+ ++L + LSGG K++++VA + P I+ILDE ++ +DP +
Sbjct: 117 MIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGR 176
Query: 1638 RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNF 1697
+ + VI + + T V+ TH ++EA A RI +M G++ +P L +
Sbjct: 177 QEIMRVIHEIKEKYQLT-VLSITHDLDEA-ASSDRILVMKAGEIIKEAAPSELFATSEDM 234
Query: 1698 LELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRS 1732
+E+ + SS ++DL ++ FD+P + S
Sbjct: 235 VEIGLD-VPFSSNLMKDL----RKNGFDLPEKYLS 264
|
Length = 277 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 4e-16
Identities = 52/202 (25%), Positives = 100/202 (49%), Gaps = 15/202 (7%)
Query: 572 KRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-- 629
K G+ ++ L LT+ + ++ A++G +G+GKST ++++ L +G + G+
Sbjct: 7 KFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLN 66
Query: 630 ---DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVL----KGVKEELLESVVAEMVDEV 682
R+ LG Q L TV E+L++ K K E + E +++V
Sbjct: 67 SKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKK----EALEKV 122
Query: 683 GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK 742
GL K+ + LSGG +++++L A++ +++ DEPT +DP + L+ ++
Sbjct: 123 GLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELND 182
Query: 743 -GRIILLTTHSMDEAEELGDRI 763
G+ I++ TH E + DR+
Sbjct: 183 EGKTIIIVTHDP-EVAKQADRV 203
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 4e-16
Identities = 66/230 (28%), Positives = 114/230 (49%), Gaps = 14/230 (6%)
Query: 1467 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1526
LRN+ PG + +H L+ + AG+ G +G NG+GK+T L M+ + P++G
Sbjct: 14 LRNVSFRVPG------RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGE 67
Query: 1527 AFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLEL--YARIKGVAEYRMDD--V 1581
+ + + S KA R + Y PQ E +TV+E + + Y + + D
Sbjct: 68 ILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREK 127
Query: 1582 VMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF-M 1640
V E + L A + +LSGG +++ +A+ + D ++LDEP++ +D IA + +
Sbjct: 128 VEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD-IAHQVDV 186
Query: 1641 WEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
++ RLS +G T VI H +N A C + + GG++ G+P L
Sbjct: 187 LALVHRLSQERGLT-VIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
|
Length = 265 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 4e-16
Identities = 49/203 (24%), Positives = 98/203 (48%), Gaps = 8/203 (3%)
Query: 570 ATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPT---TGDALVFGKN 626
+ + C + ++ T+ + +I+ L+G +G GKST +S ++G + TG+ + +
Sbjct: 9 SLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQR 68
Query: 627 ITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLAD 686
+ + ++ +G+ Q +LFP L+V ++L +FA+ +K + ++ GL
Sbjct: 69 LDM-LPAAQRQIGILFQDALLFPHLSVGQNL-LFALPATLKGNARRNAANAALERSGLDG 126
Query: 687 KVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLI--KKIKKGR 744
+ LSGG + +++L AL+ K ++LDEP S +D Q + + G
Sbjct: 127 AFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGI 186
Query: 745 IILLTTHSMDEAEELGDRIAIMA 767
+ TH + + G R+ MA
Sbjct: 187 PTVQVTHDLQDV-PAGSRVIEMA 208
|
Length = 213 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.7 bits (196), Expect = 5e-16
Identities = 66/233 (28%), Positives = 115/233 (49%), Gaps = 21/233 (9%)
Query: 553 QEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLV-- 610
Q V I++ L+ Y K+ A+ ++ + + +N + AL+G +G GKST I L
Sbjct: 6 QNVAQPQIKVENLNLWYGEKQ----ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRM 61
Query: 611 -GLIPP--TTGDALVFGKNI---TADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLK 664
LI G + G++I D+ E+RK +G+ Q FP +++ +++ +
Sbjct: 62 NDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH 120
Query: 665 GVKEELLESVV------AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVIL 718
G ++ L+ VV A + DE +D++ +LSGG +++L + L K+++
Sbjct: 121 GANKKDLDGVVENALRSAALWDET--SDRLKSPALSLSGGQQQRLCIARTLAVKPKIILF 178
Query: 719 DEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 771
DEPTS +DP S LI +KK I++ TH+M +A + D G L
Sbjct: 179 DEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGEL 231
|
Length = 258 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.3 bits (200), Expect = 5e-16
Identities = 62/241 (25%), Positives = 121/241 (50%), Gaps = 16/241 (6%)
Query: 550 MKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKST---TI 606
+K+ +IR + Y + + ++ L L + N++ A +G +G GKST +
Sbjct: 71 LKEDFNHANVFEIRNFNFWYMNRTKH--VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNL 128
Query: 607 SMLVGLIPPTT--GDALVFGKNITADMD---EIRKGLGVCPQYDILFPELTVREHLEMFA 661
+ L LI T+ G+ G N + E+R +G+ Q F E+++ +++
Sbjct: 129 NQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPF-EMSIFDNVAYGP 187
Query: 662 VLKGVKE-ELLESVVAEMVDEVGLADKV----NIVVRALSGGMKRKLSLGIALIGDSKVV 716
G+ + ++LE +V + + L D+V + ALSGG +++L + A+ + +V+
Sbjct: 188 RNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVL 247
Query: 717 ILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
++DEPTS +DP + +LI ++KK I++ THSM +A+ + D G ++ G
Sbjct: 248 LMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGE 307
Query: 777 S 777
+
Sbjct: 308 T 308
|
Length = 329 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 5e-16
Identities = 59/231 (25%), Positives = 113/231 (48%), Gaps = 30/231 (12%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+++ LHK Y + + L +++++G +G+GKST + + L P+ G
Sbjct: 7 LEVEDLHKRYGEHE----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGS 62
Query: 620 ALVFGKNITADMDE--------------IRKGLGVCPQYDILFPELTVREHLEMFA---V 662
V G+ I D+ +R LG+ Q+ L+ +TV E++ + A V
Sbjct: 63 IRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENV-IEAPVHV 121
Query: 663 LKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPT 722
L K E +E + +VG+A+K + LSGG ++++++ AL + +V++ DEPT
Sbjct: 122 LGVSKAEAIERAEK-YLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPT 180
Query: 723 SGMDPYSMRLTWQLIKKIKK----GRIILLTTHSMDEAEELGDRIAIMANG 769
S +DP L +++K ++ GR +++ TH M A ++ + + G
Sbjct: 181 SALDP---ELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQG 228
|
Length = 256 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 6e-16
Identities = 71/274 (25%), Positives = 129/274 (47%), Gaps = 21/274 (7%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
I L+N+ Y G + + A+ + +++ G F+G G+GK+T + +++G PT
Sbjct: 3 INLQNVSYTYQAGTPFEGR-ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ 61
Query: 1525 GTAFIFGKDIRS-----DPKAARRLIGYCPQF-DALLEYLTVQEHLELYARIKGVAEYRM 1578
G+ + I S D K R+ +G QF ++ L TV + + + GV++
Sbjct: 62 GSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEA 121
Query: 1579 DDVVMEKL----VEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP 1634
+ + EKL + L + K P F LSGG R++++A + +P I++LDEP+ G+DP
Sbjct: 122 EALAREKLALVGISESLFE--KNP-FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDP 178
Query: 1635 IAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRF 1694
++ + + +L Q ++L TH M++ + ++ G+L G P K F
Sbjct: 179 KGRKELMTLFKKL--HQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKP---KDIF 233
Query: 1695 GNFLELEVKPTEVSSVDLEDLCQIIQERVFDIPS 1728
+ LE K V + Q + +R S
Sbjct: 234 QDVDFLEEKQLGVPKI--TKFAQRLADRGISFSS 265
|
Length = 280 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 77.9 bits (193), Expect = 6e-16
Identities = 57/179 (31%), Positives = 85/179 (47%), Gaps = 13/179 (7%)
Query: 1487 HSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIG 1546
L+F++ AGE G NGAGKT+ L +++G P G G+ IR + +
Sbjct: 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLL 77
Query: 1547 YCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGN 1606
Y + LT E+L Y R+ G + D+ + E L + L P LS G
Sbjct: 78 YLGHQPGIKTELTALENLRFYQRLHGPGD---DEALWEALAQVGLAGFEDVPVRQLSAGQ 134
Query: 1607 KRKLSVAIA--MIGDPPIVILDEPSTGMDPIAKRFMWEVISRLS--TRQGKTAVILTTH 1661
+R+ VA+A + P+ ILDEP T +D K+ + + + L+ QG VILTTH
Sbjct: 135 QRR--VALARLWLTRAPLWILDEPFTAID---KQGVARLEALLAQHAEQGGM-VILTTH 187
|
Length = 204 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 7e-16
Identities = 58/222 (26%), Positives = 114/222 (51%), Gaps = 19/222 (8%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
IQ+ ++ Y + A+ + L E + L LLG +GAGKS+ + +L L P +G
Sbjct: 3 IQLNGINCFYGAHQ----ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT 58
Query: 620 ALVFGK--NITADMDE-----IRKGLGVCPQYDILFPELTVREHL-EMFAVLKGVKEELL 671
+ G + + + +R+ +G+ Q L+P LTV+E+L E + G+ ++
Sbjct: 59 LNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQA 118
Query: 672 ESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMR 731
+ +++ + L + LSGG ++++++ AL+ + +V++ DEPT+ +DP
Sbjct: 119 LARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP---E 175
Query: 732 LTWQLIKKIKK----GRIILLTTHSMDEAEELGDRIAIMANG 769
+T Q++ IK+ G ++ TH ++ A + R+ M NG
Sbjct: 176 ITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENG 217
|
Length = 242 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.9 bits (194), Expect = 7e-16
Identities = 61/212 (28%), Positives = 114/212 (53%), Gaps = 15/212 (7%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGL---IPPTTGDALVFGKNI-TADMDE 633
A+ + + + +N+I AL+G +G GKST + + I G + GK++ D+
Sbjct: 17 ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVA 76
Query: 634 IRKGLGVCPQYDILFPELTVREHL----EMFAVLKGVKEELLESVVAEMVDEVGL----A 685
+RK +G+ Q +F + ++ E++ ++ ++K EE E++V + + +VGL
Sbjct: 77 LRKNVGMVFQQPNVFVK-SIYENISYAPKLHGMIKNKDEE--EALVVDCLQKVGLFEEVK 133
Query: 686 DKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRI 745
DK+ ALSGG +++L + AL K+++LDEPTS +DP S + +L+K++
Sbjct: 134 DKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLS 193
Query: 746 ILLTTHSMDEAEELGDRIAIMANGSLKCCGSS 777
+++ TH+M + + + D A G L G S
Sbjct: 194 MIMVTHNMQQGKRVADYTAFFHLGELIEFGES 225
|
Length = 246 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 7e-16
Identities = 62/226 (27%), Positives = 115/226 (50%), Gaps = 25/226 (11%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I+++ L K + + ++ + L + +++A++G +G+GK+T + + L P G
Sbjct: 4 IEVKNLVKKFHGQT----VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGT 59
Query: 620 ALVFGKNITADMD-----------EIRKGLGVCPQYDILFPELTVREH-LEMFAVLKGVK 667
V +IT D ++R+ +G Q LFP TV E+ +E ++KG
Sbjct: 60 IRV--GDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEP 117
Query: 668 EELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP 727
+E + E++ +VGLA K R LSGG ++++++ AL +V++ DEPTS +DP
Sbjct: 118 KEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDP 177
Query: 728 YSMRLTWQLIKKIK----KGRIILLTTHSMDEAEELGDRIAIMANG 769
L +++ I+ + R +++ TH M A ++ DR M G
Sbjct: 178 ---ELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQG 220
|
Length = 250 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 8e-16
Identities = 48/211 (22%), Positives = 96/211 (45%), Gaps = 10/211 (4%)
Query: 1489 LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPK-----AARR 1543
F++ G +G+GKTT + +I+G P +G + G+ + K +R
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 1544 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKH-AKKPSFTL 1602
IGY Q L +L+V+ +L Y + R + E+++E + H + L
Sbjct: 76 RIGYVFQEARLFPHLSVRGNLR-YGMKRARPSER--RISFERVIELLGIGHLLGRLPGRL 132
Query: 1603 SGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHS 1662
SGG K+++++ A++ P ++++DEP +D K + + RL + ++ +HS
Sbjct: 133 SGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLH-AEFGIPILYVSHS 191
Query: 1663 MNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693
+ E L R+ ++ G++ G +
Sbjct: 192 LQEVLRLADRVVVLEDGRVAAAGPIAEVWAS 222
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 9e-16
Identities = 61/210 (29%), Positives = 108/210 (51%), Gaps = 11/210 (5%)
Query: 1485 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDI-RSDPKAARR 1543
A+ S+ +V GE LG NGAGK+T + ++SG PT GT I + + D K A +
Sbjct: 20 ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQ 79
Query: 1544 L-IGYCPQFDALLEYLTVQEHL----ELYARIKGV--AEYR-MDDVVMEKLVEFDLLKHA 1595
L IG Q ++++ LTV E+L L ++ GV ++R M L+ L
Sbjct: 80 LGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDL 139
Query: 1596 KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTA 1655
+ LS +K+ L +A ++ D ++I+DEP++ + +++ ++++L R+ TA
Sbjct: 140 DEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQL--RKEGTA 197
Query: 1656 VILTTHSMNEAQALCTRIGIMVGGQLRCIG 1685
++ +H + E + +C R +M G C G
Sbjct: 198 IVYISHKLAEIRRICDRYTVMKDGSSVCSG 227
|
Length = 510 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 9e-16
Identities = 65/253 (25%), Positives = 117/253 (46%), Gaps = 33/253 (13%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP----TTGDALVFGKNITADMDEI 634
V+ + LTL ++LAL+G +G+GKS T + +G++P T G L+ GK +
Sbjct: 19 VHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRG 78
Query: 635 RKGLGVCPQYDILF-PELTVREH-LEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVV 692
RK + F P T+ H E + + ++ + ++ VGL + ++
Sbjct: 79 RKIATIMQNPRSAFNPLHTMHTHARE---TCLALGKPADDATLTAALEAVGLENAARVLK 135
Query: 693 R---ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI--KKGRIIL 747
+SGGM +++ + +AL+ ++ +I DEPT+ +D + L++ I K+ +L
Sbjct: 136 LYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGML 195
Query: 748 LTTHSMDEAEELGDRIAIMANGSLKCCGS--SLFLKHQYGVGYTLTLVKSAPDASAAADI 805
L TH M L D +A+M++G + G +LF +AP + +
Sbjct: 196 LVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF---------------NAPKHAVTRSL 240
Query: 806 VYRHIPSALCVSE 818
V H+ AL E
Sbjct: 241 VSAHL--ALYGME 251
|
Length = 254 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.0 bits (194), Expect = 1e-15
Identities = 55/213 (25%), Positives = 102/213 (47%), Gaps = 9/213 (4%)
Query: 1482 AKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTA-----FIFGKDIRS 1536
A A+ + V+ G +G G+GK+T L ++G PT+G + +
Sbjct: 18 ASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQK 77
Query: 1537 DPKAARRLIGYCPQF-DALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHA 1595
+ K R+ +G QF ++ L TV + + + G+ + + + + EKL L
Sbjct: 78 EIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEF 137
Query: 1596 -KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKT 1654
+K F LSGG R++++A + +P +++LDEP+ G+DP A+ M ++ S Q
Sbjct: 138 WEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFE--SIHQSGQ 195
Query: 1655 AVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1687
V+L TH M++ + ++ G + G+P
Sbjct: 196 TVVLVTHLMDDVADYADYVYLLEKGHIISCGTP 228
|
Length = 288 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 1e-15
Identities = 59/210 (28%), Positives = 104/210 (49%), Gaps = 34/210 (16%)
Query: 580 NSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEIRKGL 638
L LT+ + +AL+G +G GKST +S+L PT+G+ L+ G +I ++ +R +
Sbjct: 20 KGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQI 79
Query: 639 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEV-----------GLADK 687
G+ Q +LF + T+ E++ G E V+E L D
Sbjct: 80 GLVSQEPVLF-DGTIAENIRY-----G-----KPDATDEEVEEAAKKANIHDFIMSLPDG 128
Query: 688 VNIVVRA----LSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKG 743
+ +V LSGG K+++++ AL+ + K+++LDE TS +D S +L + + + KG
Sbjct: 129 YDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKG 188
Query: 744 RIILLTTH---SMDEAEELGDRIAIMANGS 770
R ++ H ++ A D IA++ NG
Sbjct: 189 RTTIVIAHRLSTIRNA----DLIAVLQNGQ 214
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.5 bits (193), Expect = 1e-15
Identities = 59/208 (28%), Positives = 107/208 (51%), Gaps = 18/208 (8%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIP--PTTGDALVFGKNI---TAD 630
+ ++ L + +N + AL+G +G GKST T++ + LIP G + G +I D
Sbjct: 19 LKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVD 78
Query: 631 MDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEE-LLESVVAEMV------DEVG 683
+ E+RK +G+ Q FP+ ++ +++ + G +E +E V E + DEV
Sbjct: 79 VVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEV- 136
Query: 684 LADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKG 743
DK++ LSGG +++L + + +V+++DEP S +DP S LI K+K+
Sbjct: 137 -KDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKED 195
Query: 744 RIILLTTHSMDEAEELGDRIAIMANGSL 771
I++ TH+M +A + + NG +
Sbjct: 196 YTIVIVTHNMQQATRVSKYTSFFLNGEI 223
|
Length = 250 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 1e-15
Identities = 67/229 (29%), Positives = 107/229 (46%), Gaps = 22/229 (9%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1523
+I ++ K Y GG++ A+ +TF ++ GE G +GAGK+T L +I G E P+
Sbjct: 1 MIRFEHVSKAYLGGRQ-----ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS 55
Query: 1524 DGTAFIFGKDI----RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMD 1579
G + G DI + RR IG Q LL TV +++ + I G + +
Sbjct: 56 AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIR 115
Query: 1580 DVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF 1639
V L + LL AK LSGG ++++ +A A++ P +++ DEP+ +D
Sbjct: 116 RRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDA---- 171
Query: 1640 MWEVISRL---STRQGKTAVILTTHSMNEAQALCTRI-----GIMVGGQ 1680
+ E I RL R G T V++ TH + R+ G + GG
Sbjct: 172 LSEGILRLFEEFNRVGVT-VLMATHDIGLISRRSYRMLTLSDGHLHGGV 219
|
Length = 222 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 1e-15
Identities = 48/189 (25%), Positives = 104/189 (55%), Gaps = 10/189 (5%)
Query: 590 QILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT-ADMDEIRKGLGVCPQYDILF 648
+ +A++G +G+GKST + +L ++G L+ G++I +D +R+ +GV PQ +LF
Sbjct: 28 KKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLF 87
Query: 649 PELTVREHLEMFAVLKGVKEELLESVVAEMVDE--VGLADKVNIVV--RA--LSGGMKRK 702
+ T+ ++ + EE++E+ A + + + D + +V R LSGG K++
Sbjct: 88 ND-TIGYNIR-YGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQR 145
Query: 703 LSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDR 762
+++ A++ + +++LDE TS +D ++ R ++ + KGR ++ H + D+
Sbjct: 146 VAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN-ADK 204
Query: 763 IAIMANGSL 771
I ++ +G +
Sbjct: 205 IIVLKDGRI 213
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (192), Expect = 2e-15
Identities = 55/230 (23%), Positives = 112/230 (48%), Gaps = 15/230 (6%)
Query: 1481 DAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSM------ISGEEYPTDGTAFIFGKDI 1534
+ K + +T + FG +G +G+GK+T L + I + DG FGKDI
Sbjct: 21 NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDI 80
Query: 1535 -RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYR-MDDVVMEKLVEFDLL 1592
+ D R+ +G Q +L++ +++ + G+ E R + +V E L + L
Sbjct: 81 FQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLW 140
Query: 1593 KHA----KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLS 1648
K P+ LSGG +++L++A A+ P ++++DEP++ +D + + + ++I+ L
Sbjct: 141 KEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITEL- 199
Query: 1649 TRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFL 1698
+ + A+++ +H+ + + + + G+L GS + T N L
Sbjct: 200 --KNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNEL 247
|
Length = 257 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 2e-15
Identities = 62/231 (26%), Positives = 111/231 (48%), Gaps = 10/231 (4%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
I N+ +Y G + K + +++F ++ G +G G+GK+T + + P+
Sbjct: 3 IKFENVDYIYSPGTPMEKK-GLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSS 61
Query: 1525 GTAFIFGKDIRSDP-----KAARRLIGYCPQF-DALLEYLTVQEHLELYARIKGVAEYRM 1578
GT I G I + K R+ + QF +A L TV + +E + G +E
Sbjct: 62 GTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEA 121
Query: 1579 DDVVMEKLVEFDLLKH-AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK 1637
+ ++ L + L + K F LSGG R++++A M +P I+ LDEP+ G+DP +
Sbjct: 122 KEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGR 181
Query: 1638 RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1688
+ M ++ + G T VIL TH+M++ + ++ G+L SP+
Sbjct: 182 KEMMQLFKDYQ-KAGHT-VILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230
|
Length = 287 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 2e-15
Identities = 62/271 (22%), Positives = 123/271 (45%), Gaps = 25/271 (9%)
Query: 1438 DTLDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGE 1497
+ LD +++ + + GS++ N+ YPG K + ++FS++ GE
Sbjct: 307 ELLDEEPEVEDPPDPLKDTIGSIE-----FENVSFSYPGKK-----PVLKDISFSIEPGE 356
Query: 1498 CFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARRLIGYCPQFDALLE 1556
+G +G+GK+T + ++ PT G I G DIR + R+ IG Q L
Sbjct: 357 KVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS 416
Query: 1557 YLTVQEHLELY------ARIKGVAEY-RMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRK 1609
T++E++ L I+ + + + + LSGG +++
Sbjct: 417 G-TIRENIALGRPDATDEEIEEALKLANAHEFIANL--PDGYDTIVGERGVNLSGGQRQR 473
Query: 1610 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQAL 1669
L++A A++ +PPI+ILDE ++ +D + + + + +L +G+T +I+ A
Sbjct: 474 LAIARALLRNPPILILDEATSALDTETEALIQDALKKL--LKGRTTLIIAHRLSTIKNA- 530
Query: 1670 CTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1700
RI ++ G++ G+ + L + G + L
Sbjct: 531 -DRIIVLDNGRIVERGTHEELLAKGGLYARL 560
|
Length = 567 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 2e-15
Identities = 68/236 (28%), Positives = 111/236 (47%), Gaps = 36/236 (15%)
Query: 1467 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1526
+ N+ V PGGK K + ++FS+QAGE +G +G+GK+T +I G PT G+
Sbjct: 319 VENVTIVPPGGK----KPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGS 374
Query: 1527 AFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV-ME 1584
+ G D++ D + + IGY PQ D L TV E++ R + E
Sbjct: 375 VRLDGADLKQWDRETFGKHIGYLPQ-DVELFPGTVAENIA-----------RFGENADPE 422
Query: 1585 KLVEFDLLK--HAKKPSF-------------TLSGGNKRKLSVAIAMIGDPPIVILDEPS 1629
K++E L H TLSGG ++++++A A+ GDP +V+LDEP+
Sbjct: 423 KIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPN 482
Query: 1630 TGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1685
+ +D ++ + I L R VI TH + +I ++ G++ G
Sbjct: 483 SNLDEEGEQALANAIKALKARGITVVVI--THRPS-LLGCVDKILVLQDGRIARFG 535
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 2e-15
Identities = 67/212 (31%), Positives = 113/212 (53%), Gaps = 20/212 (9%)
Query: 562 IRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDAL 621
+ + K Y + +N L L + Q +A++G +G GKST + +L GL P+ G+ L
Sbjct: 15 LNAVSKRYGERT----VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGE-L 69
Query: 622 VFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV-KEELLESVVAEMVD 680
+ G TA + E R+ + Q L P V +++ + LKG ++ L+++
Sbjct: 70 LAG---TAPLAEAREDTRLMFQDARLLPWKKVIDNVGLG--LKGQWRDAALQAL-----A 119
Query: 681 EVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ-LIKK 739
VGLAD+ N ALSGG K++++L ALI +++LDEP +D + R+ Q LI+
Sbjct: 120 AVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALT-RIEMQDLIES 178
Query: 740 I--KKGRIILLTTHSMDEAEELGDRIAIMANG 769
+ + G +LL TH + EA + DR+ ++ G
Sbjct: 179 LWQQHGFTVLLVTHDVSEAVAMADRVLLIEEG 210
|
Length = 257 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 2e-15
Identities = 71/234 (30%), Positives = 120/234 (51%), Gaps = 36/234 (15%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIPP- 615
IQ+R L+ Y G A+ ++ L + +NQ+ A +G +G GKST T + + L P
Sbjct: 14 IQVRNLNFYY----GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQ 69
Query: 616 -TTGDALVFGKNITA---DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELL 671
G+ L+ G+NI D+ +R +G+ Q FP +++ +++ GV+ L
Sbjct: 70 RAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAF-----GVR--LF 121
Query: 672 ESVV-AEMVDEVGLA-----------DKVNIVVRALSGGMKRKLSL--GIALIGDSKVVI 717
E + AEM + V A DK++ +LSGG +++L + GIA+ +V++
Sbjct: 122 EKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAI--RPEVLL 179
Query: 718 LDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 771
LDEP S +DP S +LI ++K+ +++ TH+M +A D A M G L
Sbjct: 180 LDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGEL 233
|
Length = 260 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.7 bits (191), Expect = 2e-15
Identities = 61/213 (28%), Positives = 108/213 (50%), Gaps = 17/213 (7%)
Query: 574 GNCCAVNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIP--PTTGDALVFGKNI- 627
G+ AV ++ L + + AL+G +G GK+T I+ + L P TG L+ G++I
Sbjct: 15 GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIY 74
Query: 628 --TADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAE-------M 678
D +R+ +G+ Q FP ++V +++ L G+++ VAE +
Sbjct: 75 GPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAAL 134
Query: 679 VDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIK 738
DEV D++ LSGG +++L + AL + +++++DEPTS +DP S L+
Sbjct: 135 WDEV--KDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMT 192
Query: 739 KIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 771
+KK I++ TH+M +A + D + G L
Sbjct: 193 DLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDL 225
|
Length = 252 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 2e-15
Identities = 63/228 (27%), Positives = 113/228 (49%), Gaps = 34/228 (14%)
Query: 1475 PGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDI 1534
PG K K + ++F++QAGE G +G +G+GK+T ++ G PT G+ + G D+
Sbjct: 345 PGQK----KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADL 400
Query: 1535 RS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVE----- 1588
R D + R IGY PQ L + T+ E++ AR ++ EK++E
Sbjct: 401 RQWDREQLGRHIGYLPQDVELFDG-TIAENI---ARFG-------EEADPEKVIEAARLA 449
Query: 1589 --FDLLKHAKK--------PSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKR 1638
+L+ + TLSGG ++++++A A+ GDP +V+LDEP++ +D +
Sbjct: 450 GVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEA 509
Query: 1639 FMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS 1686
+ I L+ + V++ H + A A +I ++ G++ G
Sbjct: 510 ALAAAI--LAAKARGGTVVVIAHRPS-ALASVDKILVLQDGRIAAFGP 554
|
Length = 580 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 3e-15
Identities = 65/239 (27%), Positives = 108/239 (45%), Gaps = 29/239 (12%)
Query: 1478 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP---TDGTAFIFGKDI 1534
+ K + +++ + GE +G++GAGKTT ++ ++ G+ + G I
Sbjct: 33 RERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPI 92
Query: 1535 RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDD---------VVMEK 1585
D K R + Y Q D + LTV+EHL A + RM V E
Sbjct: 93 --DAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHL------RMPRRVTKKEKRERVDEV 144
Query: 1586 LVEFDLLKHAK------KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF 1639
L L K A LSGG +++L+ A ++ DPP++ DEP++G+D
Sbjct: 145 LQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYS 204
Query: 1640 MWEVISRLSTRQGKTAVILTTHS-MNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNF 1697
+ +V+ L+ + GKT +I T H +E L +I +M G++ +GSP F +
Sbjct: 205 VVQVLKGLAQK-GKT-IICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDL 261
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 3e-15
Identities = 49/192 (25%), Positives = 84/192 (43%), Gaps = 24/192 (12%)
Query: 582 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVC 641
L + +A++G NGAGKST + +L G + P +G + G+ + +G
Sbjct: 341 LSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGT-VKVGETVK---------IGYF 390
Query: 642 PQ-YDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGL-ADKVNIVVRALSGGM 699
Q D L P+ TV E L + E V + G + V LSGG
Sbjct: 391 DQHRDELDPDKTVLEELS------EGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGE 444
Query: 700 KRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAE 757
K +L L L+ +++LDEPT+ +D S+ L + + +G ++ L +H +
Sbjct: 445 KARLLLAKLLLQPPNLLLLDEPTNHLDIESLE---ALEEALLDFEGTVL-LVSHDRYFLD 500
Query: 758 ELGDRIAIMANG 769
+ RI ++ +
Sbjct: 501 RVATRIWLVEDK 512
|
Length = 530 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 3e-15
Identities = 56/246 (22%), Positives = 109/246 (44%), Gaps = 47/246 (19%)
Query: 1479 RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-D 1537
+ D V + +++ ++ GE G +G +G+GK+T +I P +G + G D+ D
Sbjct: 11 KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALAD 70
Query: 1538 PKAARRLIGYCPQFDALLEYLTVQEHLEL------------YARIKGVAEYRM------D 1579
P RR +G Q + L ++++++ L A++ G ++ D
Sbjct: 71 PAWLRRQVGVVLQENVLFNR-SIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYD 129
Query: 1580 DVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF 1639
+V E+ LSGG ++++++A A+I +P I+I DE ++ +D ++
Sbjct: 130 TIVGEQGA-------------GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHA 176
Query: 1640 MWEVISRLSTRQGKTAVILTTHSMNEAQALCT-----RIGIMVGGQLRCIGSPQHLKTRF 1694
+ + + G+T +I+ A L T RI +M G++ GS L
Sbjct: 177 IMRNMHDIC--AGRTVIII-------AHRLSTVKNADRIIVMEKGRIVEQGSHDELLAEN 227
Query: 1695 GNFLEL 1700
G + L
Sbjct: 228 GLYAYL 233
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 3e-15
Identities = 57/193 (29%), Positives = 91/193 (47%), Gaps = 23/193 (11%)
Query: 560 IQIRKLHKVYATK-----RGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP 614
+++R L K + + R AV + TL E Q LA++G NG+GKST ML G+I
Sbjct: 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE 64
Query: 615 PTTGDALVFGKNITADMDEIRKGLGVCPQYDILF--PELTVREHLEMFAVLKG------- 665
PT+G+ L+ + R + ++F P ++ L + +L
Sbjct: 65 PTSGEILINDHPLHFGDYSFR-----SKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTD 119
Query: 666 VKEELLESVVAEMVDEVGL-ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSG 724
++ E + E + VGL D N L+ G K++++L ALI K++I DE +
Sbjct: 120 LEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALAS 179
Query: 725 MDPYSMRLTWQLI 737
+D SMR QLI
Sbjct: 180 LD-MSMRS--QLI 189
|
Length = 267 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.0 bits (189), Expect = 4e-15
Identities = 64/245 (26%), Positives = 120/245 (48%), Gaps = 39/245 (15%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I++ KL K + + A++++ L ++ +++ALLG +G+GKST + L GLI TGD
Sbjct: 5 IRVEKLAKTFNQHQ----ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLI---TGD 57
Query: 620 AL------VFGKNI------TADMDEIRKGLGVCPQYDILFPELTVREHLEMFAV----- 662
+ G+ + D+ + R G Q L L+V E++ + A+
Sbjct: 58 KSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPF 117
Query: 663 --------LKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSK 714
+ K+ L+++ VG+ + V LSGG ++++++ AL+ +K
Sbjct: 118 WRTCFSWFTREQKQRALQALT-----RVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAK 172
Query: 715 VVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLK 772
V++ DEP + +DP S R+ ++ I + G +++T H +D A +RI + G +
Sbjct: 173 VILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVF 232
Query: 773 CCGSS 777
GSS
Sbjct: 233 YDGSS 237
|
Length = 262 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 4e-15
Identities = 58/242 (23%), Positives = 99/242 (40%), Gaps = 55/242 (22%)
Query: 1464 IIYLRNLRKVY----PGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGE 1519
++ + +L K + GG R + +++ +V AGEC G +GAGK+T L +
Sbjct: 1 LLEVEDLSKTFTLHQQGGVRLPV---LKNVSLTVNAGECVALSGPSGAGKSTLLKSLYAN 57
Query: 1520 EYPTDGTAFIFGKDIRSDPKAA---------RRLIGYCPQFDALLEYLTVQEHLELYARI 1570
P G + + D A R+ IGY QF L + R+
Sbjct: 58 YLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQF------------LRVIPRV 105
Query: 1571 KGVAEYRMDDVVMEKLVEF------------DLLKHAKKPS-------FTLSGGNKRKLS 1611
+ +VV E L+E +LL P T SGG +++++
Sbjct: 106 SAL------EVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVN 159
Query: 1612 VAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCT 1671
+A I D PI++LDEP+ +D ++ + E+I+ R A+I H + +
Sbjct: 160 IARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKAR--GAALIGIFHDEEVRELVAD 217
Query: 1672 RI 1673
R+
Sbjct: 218 RV 219
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 4e-15
Identities = 60/219 (27%), Positives = 111/219 (50%), Gaps = 11/219 (5%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I+ +++ Y R + A++ L LT+ + +AL+G +GAGKST +L+ P +G
Sbjct: 338 IEFEQVNFAYPA-RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGR 396
Query: 620 ALVFGKNI-TADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEM 678
L+ G ++ D E+R + + PQ +LF +V E++ + EE+ + A
Sbjct: 397 ILLDGVDLRQLDPAELRARMALVPQDPVLFAA-SVMENIR-YGRPDATDEEVEAAARAAH 454
Query: 679 VDEV------GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRL 732
E G + LSGG ++++++ A++ D+ +++LDE TS +D S +L
Sbjct: 455 AHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQL 514
Query: 733 TWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 771
Q ++ + KGR L+ H + + DRI +M G +
Sbjct: 515 VQQALETLMKGRTTLIIAHRLATVLK-ADRIVVMDQGRI 552
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 5e-15
Identities = 55/220 (25%), Positives = 104/220 (47%), Gaps = 10/220 (4%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I++ L K G + ++L + + +A++G +G+GKST +++L GL P++G+
Sbjct: 7 IEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGE 66
Query: 620 ALVFGKNITADMDE------IRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLES 673
+ G+ + +DE + +G Q L P LT E++ + L+G +
Sbjct: 67 VRLLGQPLH-KLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRA 125
Query: 674 VVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLT 733
+++ VGL ++ LSGG +++++L A G V+ DEPT +D +
Sbjct: 126 GAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKI 185
Query: 734 WQLI--KKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 771
L+ ++G ++L TH A DR + +G L
Sbjct: 186 ADLLFALNRERGTTLVLVTHDPQLAARC-DRQLRLRSGRL 224
|
Length = 228 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 5e-15
Identities = 62/209 (29%), Positives = 115/209 (55%), Gaps = 18/209 (8%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTI---SMLVGLIP--PTTGDALVFGKNIT---A 629
A+ + +++ +N++ AL+G +G GKST + + + LIP TGD L G+NI A
Sbjct: 21 ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGA 80
Query: 630 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEE-LLESVV------AEMVDEV 682
D+ +R+ +G+ Q FP+ ++ E++ + G K + L+++V A + DEV
Sbjct: 81 DVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEV 139
Query: 683 GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK 742
D+++ +LSGG +++L + L + +V+++DEP S +DP + LI+ +KK
Sbjct: 140 --KDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK 197
Query: 743 GRIILLTTHSMDEAEELGDRIAIMANGSL 771
+++ TH+M +A + D M G L
Sbjct: 198 EYTVIIVTHNMQQAARVSDYTGFMYLGKL 226
|
Length = 253 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 6e-15
Identities = 68/228 (29%), Positives = 119/228 (52%), Gaps = 13/228 (5%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+ +R + K Y G+ + L ++E + + +G +G GKST + M+ GL T+GD
Sbjct: 4 VTLRNVTKAY----GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGD 59
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 679
L G+ D+ +G+G+ Q L+P L+V E++ L G K+E + V ++
Sbjct: 60 -LFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVA 118
Query: 680 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPY---SMRLTWQL 736
+ + LA ++ +ALSGG ++++++G L+ + V +LDEP S +D MR+
Sbjct: 119 EVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE--- 175
Query: 737 IKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782
I ++ K GR ++ TH EA L D+I ++ G + G L L H
Sbjct: 176 ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223
|
Length = 369 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 6e-15
Identities = 58/225 (25%), Positives = 106/225 (47%), Gaps = 34/225 (15%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD------- 630
A++++ + + + + +A++G G+GK+T I L L+ P TG K+
Sbjct: 22 ALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81
Query: 631 ------------------MDEIRKGLGVCPQYD--ILFPELTVREHLEMFAVLKGVKEEL 670
+ EIR+ +GV Q+ LF E T+ + + V GV +E
Sbjct: 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEE 140
Query: 671 LESVVAEMVDEVGLADKVNIVVR---ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP 727
+ A+ ++ VGL + + R LSGG KR+++L L + ++ DEPT+G+DP
Sbjct: 141 AKKRAAKYIELVGL--DESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDP 198
Query: 728 YSMRLTWQLIKKI-KKGRIILLTTHSMDEAEELGDRIAIMANGSL 771
++ ++ + K+G+ I+L TH +D E R +G +
Sbjct: 199 QGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKI 243
|
Length = 305 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 7e-15
Identities = 62/217 (28%), Positives = 109/217 (50%), Gaps = 12/217 (5%)
Query: 1487 HSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIG 1546
+ ++ + +G+ LG +G+GKTT L +I+G E+ T G G D+ S A R +G
Sbjct: 19 NDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDV-SRLHARDRKVG 77
Query: 1547 YCPQFDALLEYLTVQEH----LELYARIKGVAEYRMDDVVMEKLVEFDLLKH-AKKPSFT 1601
+ Q AL ++TV ++ L + R + + V +L+E L H A +
Sbjct: 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVT-QLLEMVQLAHLADRYPAQ 136
Query: 1602 LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1661
LSGG K+++++A A+ +P I++LDEP +D ++ + + +L T+V + TH
Sbjct: 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFV-TH 195
Query: 1662 SMNEAQALCTRIGIMVGGQLRCIGSPQHL----KTRF 1694
EA + R+ +M G + G+P + TRF
Sbjct: 196 DQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRF 232
|
Length = 353 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 8e-15
Identities = 56/217 (25%), Positives = 107/217 (49%), Gaps = 32/217 (14%)
Query: 1498 CFGFLGTNGAGKTTTLSMIS-----GEEYPTDGTAFIFGKDIRS---DPKAARRLIGYCP 1549
F +G +G GK+T L + EE +G +FG++I S DP RR +G
Sbjct: 32 VFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVF 91
Query: 1550 QFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHA----------KKPS 1599
Q+ +LT+ +++ + ++ G+ + + + +++ VE+ L K A PS
Sbjct: 92 QYPNPFPHLTIYDNVAIGVKLNGLVKSKKE---LDERVEWALKKAALWDEVKDRLNDYPS 148
Query: 1600 FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILT 1659
LSGG +++L +A A+ P I+++DEP+ +DP+ + E++ L + ++L
Sbjct: 149 -NLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK---EYTIVLV 204
Query: 1660 THSMNEAQALCTRIGIMVGGQLRCIG-------SPQH 1689
THS +A + + + G+L +G +P+H
Sbjct: 205 THSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPEH 241
|
Length = 253 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 8e-15
Identities = 54/209 (25%), Positives = 108/209 (51%), Gaps = 18/209 (8%)
Query: 1490 TFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCP 1549
+V+ GE LG +GAGK+T L++I+G P G+ + G+D + P +RR +
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTP-PSRRPVSMLF 77
Query: 1550 QFDALLEYLTVQEH--------LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFT 1601
Q + L +LTV ++ L+L A + + +E L+ + P
Sbjct: 78 QENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLA-------RLPG-Q 129
Query: 1602 LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1661
LSGG ++++++A ++ + PI++LDEP + +DP ++ M ++S++ + T +++ +H
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLT-LLMVSH 188
Query: 1662 SMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
S+ +A + R ++ G++ G L
Sbjct: 189 SLEDAARIAPRSLVVADGRIAWDGPTDEL 217
|
Length = 232 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 1e-14
Identities = 61/234 (26%), Positives = 112/234 (47%), Gaps = 12/234 (5%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1523
+I R+L Y G K A++++ F +G NGAGK+T +G PT
Sbjct: 3 LIETRDLCYSYSGSKE-----ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT 57
Query: 1524 DGTAFIFGKDI-RSDPKAARRLIGYCPQF-DALLEYLTVQEHLELYARIKGVAEYRMDDV 1581
G+ I G+ I + + + R+ +G Q D + TV++ + G+ E +
Sbjct: 58 SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHR 117
Query: 1582 VMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVA--IAMIGDPPIVILDEPSTGMDPIAKRF 1639
V L L + + LSGG K+++++A IAM +P +++LDEP+ G+DP +
Sbjct: 118 VSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAM--EPQVLVLDEPTAGLDPQGVKE 175
Query: 1640 MWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693
+ + ++ L G T VI +TH ++ + I +M G++ G+ + + +
Sbjct: 176 LIDFLNDLPETYGMT-VIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228
|
Length = 277 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 1e-14
Identities = 69/214 (32%), Positives = 112/214 (52%), Gaps = 28/214 (13%)
Query: 571 TKR-GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA 629
TKR G+ +++L LT+ + ++ LLG +G GK+T + ++ GL PT G + G+++T
Sbjct: 13 TKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTH 72
Query: 630 DMDEIRKGLGVCPQYDILFPELTVREH----LEMFAVLKG-----VKEELLESVVAEMVD 680
+ R V Y LFP +++ E+ L+M V K VKE L E+VD
Sbjct: 73 RSIQQRDICMVFQSY-ALFPHMSLGENVGYGLKMLGVPKEERKQRVKEAL------ELVD 125
Query: 681 EVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP---YSMRLTWQLI 737
G D+ V +SGG +++++L ALI KV++ DEP S +D SMR + I
Sbjct: 126 LAGFEDRY---VDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMR---EKI 179
Query: 738 KKIKKGRII--LLTTHSMDEAEELGDRIAIMANG 769
+++++ I L TH EA + D + +M G
Sbjct: 180 RELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKG 213
|
Length = 351 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 1e-14
Identities = 53/217 (24%), Positives = 106/217 (48%), Gaps = 8/217 (3%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I+ + K Y R A+ + + ++ L GH+GAGKST + ++ G+ P+ G
Sbjct: 2 IRFEHVSKAYLGGRQ---ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGK 58
Query: 620 ALVFGKNIT----ADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVV 675
G +IT ++ +R+ +G+ Q L + TV +++ + ++ G + + V
Sbjct: 59 IWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRV 118
Query: 676 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ 735
+ +D+VGL DK LSGG ++++ + A++ V++ DEPT +D +
Sbjct: 119 SAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILR 178
Query: 736 LIKKIKK-GRIILLTTHSMDEAEELGDRIAIMANGSL 771
L ++ + G +L+ TH + R+ +++G L
Sbjct: 179 LFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHL 215
|
Length = 222 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 1e-14
Identities = 66/229 (28%), Positives = 108/229 (47%), Gaps = 37/229 (16%)
Query: 568 VYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI 627
G + + +L + LA++G +G+GKST ++VG+ PPT+G + G ++
Sbjct: 323 TIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADL 382
Query: 628 TA-DMDEIRKGLGVCPQYDI-LFPELTVREHLEMF------------AVLKGVKEELL-- 671
D + K +G PQ D+ LFP TV E++ F A L GV E +L
Sbjct: 383 KQWDRETFGKHIGYLPQ-DVELFPG-TVAENIARFGENADPEKIIEAAKLAGVHELILRL 440
Query: 672 ----ESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP 727
++V+ G A LSGG +++++L AL GD K+V+LDEP S +D
Sbjct: 441 PDGYDTVIGP-----GGA--------TLSGGQRQRIALARALYGDPKLVVLDEPNSNLDE 487
Query: 728 YSMRLTWQLIKKIKK-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 775
+ IK +K G +++ TH D+I ++ +G + G
Sbjct: 488 EGEQALANAIKALKARGITVVVITHRP-SLLGCVDKILVLQDGRIARFG 535
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 1e-14
Identities = 61/237 (25%), Positives = 109/237 (45%), Gaps = 46/237 (19%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
I ++N+ K++ ++ K A+ +++ + GE +G G+GKTT + ++ P
Sbjct: 3 IKVKNIVKIFNKKLPTELK-ALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT 61
Query: 1525 GTAFIFGKDIRSDPKAA-------------------------RRLIGYCPQFDALLEYL- 1558
GT KD ++ K RR +G QF EY
Sbjct: 62 GTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQF---AEYQL 118
Query: 1559 ---TVQEHLELYARIKGV----AEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLS 1611
T+++ + GV A+ R + +LV D + ++ F LSGG KR+++
Sbjct: 119 FEQTIEKDIIFGPVSMGVSKEEAKKRAAKYI--ELVGLD-ESYLQRSPFELSGGQKRRVA 175
Query: 1612 VA--IAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEA 1666
+A +AM +P ++ DEP+ G+DP + + E+ L+ +QGKT +IL TH ++
Sbjct: 176 LAGILAM--EPDFLVFDEPTAGLDPQGVKEILEIFDNLN-KQGKT-IILVTHDLDNV 228
|
Length = 305 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 1e-14
Identities = 43/143 (30%), Positives = 82/143 (57%), Gaps = 7/143 (4%)
Query: 590 QILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDE-----IR-KGLGVCPQ 643
+ +AL+G +G+GKST +++L GL ++G+ + G+ + MDE +R K +G Q
Sbjct: 37 ETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQ-MDEEARAKLRAKHVGFVFQ 95
Query: 644 YDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKL 703
+L P L E++E+ A+L+G + +++++GL +++ + LSGG ++++
Sbjct: 96 SFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRV 155
Query: 704 SLGIALIGDSKVVILDEPTSGMD 726
+L A G V+ DEPT +D
Sbjct: 156 ALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 1e-14
Identities = 57/205 (27%), Positives = 112/205 (54%), Gaps = 16/205 (7%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIPP--TTGDALVFGKNI-TADM 631
A++ + + + ENQ+ A++G +G GKST I+ + LI G+ GKN+ AD+
Sbjct: 54 ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113
Query: 632 DEI--RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVV-----AEMVDEVGL 684
D + R+ +G+ Q FP+ ++ +++ ++G ++ E V A + DEV
Sbjct: 114 DPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEV-- 170
Query: 685 ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGR 744
D+++ LSGG +++L + A+ D +V+++DEP S +DP + LI+++ +
Sbjct: 171 KDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEY 230
Query: 745 IILLTTHSMDEAEELGDRIAIMANG 769
+++ TH+M +A + D+ A+ G
Sbjct: 231 TVVIVTHNMQQAARISDKTAVFLTG 255
|
Length = 285 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 1e-14
Identities = 66/240 (27%), Positives = 124/240 (51%), Gaps = 22/240 (9%)
Query: 547 SLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKST-- 604
LD+ + +++R L+ Y K+ A+ + + + +N++ A +G +G GKST
Sbjct: 13 LLDVLNLSDEQTALEVRNLNLFYGDKQ----ALFDISMRIPKNRVTAFIGPSGCGKSTLL 68
Query: 605 -TISMLVGLIP--PTTGDALVFGKNITA---DMDEIRKGLGVCPQYDILFPELTVREHLE 658
+ + L+ G+ + G+NI D+ E+R+ +G+ Q FP+ ++ E++
Sbjct: 69 RCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVV 127
Query: 659 MFAVLKGVKEE-LLESVV------AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIG 711
L+G+ +L+ V A + DEV D+++ LSGG +++L + A+
Sbjct: 128 YGLRLQGINNRRVLDEAVERSLRGAALWDEV--KDRLHENAFGLSGGQQQRLVIARAIAI 185
Query: 712 DSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 771
+ +V++LDEPTS +DP S +LI ++K I++ TH+M +A + D A M G L
Sbjct: 186 EPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKL 245
|
Length = 272 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 1e-14
Identities = 54/227 (23%), Positives = 110/227 (48%), Gaps = 14/227 (6%)
Query: 553 QEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGL 612
+ G ++ + + Y T R + + + TL+ ++ AL+G +G+GKST +++L
Sbjct: 6 DHLKGI-VKFQNVTFAYPT-RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENF 63
Query: 613 IPPTTGDALVFGKNITA-DMDEIRKGLGVCPQYDILFPELTVREHL-------EMFAVLK 664
P G L+ GK I+ + + + + Q +LF ++++++ V +
Sbjct: 64 YQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFAR-SLQDNIAYGLQSCSFECVKE 122
Query: 665 GVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSG 724
++ S ++E+ G +V LSGG K+++++ ALI + +V+ILDE TS
Sbjct: 123 AAQKAHAHSFISEL--ASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSA 180
Query: 725 MDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 771
+D S + Q + + R +L+ H + E D+I ++ G +
Sbjct: 181 LDAESEQQVQQALYDWPERRTVLVIAHRLSTVER-ADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 2e-14
Identities = 62/203 (30%), Positives = 98/203 (48%), Gaps = 28/203 (13%)
Query: 584 LTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQ 643
L+ + ++L LLG NGAGK+T + ++GLIPP G V G + I G PQ
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHI----GYVPQ 56
Query: 644 -----YDILFPELTVREHLEMFAVLKGVKEEL---------LESVVAEMVDEVGLADKVN 689
+D FP ++V V+ G + + V + + VGL + +
Sbjct: 57 RHEFAWD--FP-ISVAH-----TVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELAD 108
Query: 690 IVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD-PYSMRLTWQLIKKIKKGRIILL 748
V LSGG ++++ + AL V++LDEP +G+D P LT I+ G IL+
Sbjct: 109 RPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILM 168
Query: 749 TTHSMDEAEELGDRIAIMANGSL 771
TTH + +A DR+ ++ NG +
Sbjct: 169 TTHDLAQAMATCDRV-VLLNGRV 190
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 2e-14
Identities = 59/213 (27%), Positives = 106/213 (49%), Gaps = 19/213 (8%)
Query: 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY 1521
N+II +N+ Y +SDA + ++F++ G+ +G NG+GK+T ++ G E
Sbjct: 5 NSIIVFKNVSFQY----QSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK 60
Query: 1522 PTDGTAFIFGKDIRSDP---KAARRLIGYC---P--QFDALLEYLTVQEHLELYARIKGV 1573
G IF + + R+ IG P QF + V LE +A V
Sbjct: 61 VKSGE--IFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHA----V 114
Query: 1574 AEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMD 1633
M V E L + D+L+ A LSGG K+++++A + +P ++ILDE ++ +D
Sbjct: 115 PYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLD 174
Query: 1634 PIAKRFMWEVISRLSTRQGKTAVILTTHSMNEA 1666
P A++ + +++ ++ + T +I TH ++EA
Sbjct: 175 PDARQNLLDLVRKVKSEHNIT-IISITHDLSEA 206
|
Length = 269 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 2e-14
Identities = 55/201 (27%), Positives = 108/201 (53%), Gaps = 8/201 (3%)
Query: 574 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT--ADM 631
G A++ + L + + +I+ L+G NGAGK+T + L G T+G + GK+IT
Sbjct: 16 GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTA 75
Query: 632 DEIRKGLGVCPQYDILFPELTVREHLEM--FAVLKGVKEELLESVVAEMVDEVGLADKVN 689
+R+ + + P+ +F +TV E+L M F + +E ++ V L ++
Sbjct: 76 KIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPR---LHERRI 132
Query: 690 IVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILL 748
+SGG ++ L++G AL+ ++++LDEP+ G+ P ++ + I++++ +G I L
Sbjct: 133 QRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFL 192
Query: 749 TTHSMDEAEELGDRIAIMANG 769
+ ++A +L DR ++ NG
Sbjct: 193 VEQNANQALKLADRGYVLENG 213
|
Length = 237 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 2e-14
Identities = 62/232 (26%), Positives = 111/232 (47%), Gaps = 15/232 (6%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1523
+I L N+ YP D A+ ++ ++ GE G +G NG+GK+T ++G P
Sbjct: 1 MIRLENVSYSYP-----DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ 55
Query: 1524 DGTAFIFGKDIRSDP---KAARRLIGYCPQFDALLEYL--TVQEHLELYARIKGVAEYRM 1578
G + G D D + R+L+G Q + +++ TV+E L + +
Sbjct: 56 KGKVLVSGIDT-GDFSKLQGIRKLVGIVFQ-NPETQFVGRTVEEDLAFGPENLCLPPIEI 113
Query: 1579 DDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKR 1638
V L E L K+ + TLSGG + +++A + +P +I DE ++ +DP +
Sbjct: 114 RKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGI 173
Query: 1639 FMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
+ E I +L +GKT ++ TH++ E RI +M G++ G P+++
Sbjct: 174 AVLERIKKLH-EKGKT-IVYITHNLEELHD-ADRIIVMDRGKIVLEGEPENV 222
|
Length = 274 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 2e-14
Identities = 61/225 (27%), Positives = 118/225 (52%), Gaps = 31/225 (13%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIPP- 615
I ++ L+ Y G+ AV + L + + A +G +G GKST T++ + +IP
Sbjct: 5 IDVKDLNIYY----GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGA 60
Query: 616 -TTGDALVFGKNI-TADMD--EIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK---- 667
G+ L+ G+++ +D +R+ +G+ Q FP +++R++ V+ G+K
Sbjct: 61 RVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDN-----VVAGLKLNGV 115
Query: 668 ------EELLESVV--AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 719
+EL+E + A + +EV D+++ LSGG +++L + A+ + V+++D
Sbjct: 116 RNKKDLDELVEKSLRGANLWNEV--KDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMD 173
Query: 720 EPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIA 764
EP S +DP S LI ++K+ I++ TH+M +A + D+ A
Sbjct: 174 EPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTA 218
|
Length = 258 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 2e-14
Identities = 71/231 (30%), Positives = 124/231 (53%), Gaps = 19/231 (8%)
Query: 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1522
A + L+ +RK Y G + + + V GE +G +G GK+T L M++G E
Sbjct: 2 AGLKLQAVRKSYDGKTQ-----VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI 56
Query: 1523 TDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYA-RIKGVAEYRMDDV 1581
T G +I G+ + ++ + A R I Q AL +++V+E++ Y +I+G+ + +++
Sbjct: 57 TSGEIWIGGRVV-NELEPADRDIAMVFQNYALYPHMSVRENMA-YGLKIRGMPKAEIEER 114
Query: 1582 VME--KLVEFD-LLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK- 1637
V E +++E + LL +KP LSGG ++++++ A++ +P + + DEP + +D AK
Sbjct: 115 VAEAARILELEPLLD--RKPR-ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD--AKL 169
Query: 1638 RF-MWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1687
R M I RL R T+ + TH EA L R+ +M GG IG+P
Sbjct: 170 RVQMRLEIQRLHRRLKTTS-LYVTHDQVEAMTLADRVVVMNGGVAEQIGTP 219
|
Length = 356 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 2e-14
Identities = 64/248 (25%), Positives = 111/248 (44%), Gaps = 47/248 (18%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
+ +N+ YPG D + ++ + AGE +G +G+GK+T +++I
Sbjct: 1 VEFKNVTFRYPG----DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDS 56
Query: 1525 GTAFIFGKDIRSDPKAA--RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV 1582
G I G D+R D A RR IG Q D L TV E++ Y R
Sbjct: 57 GRILIDGHDVR-DYTLASLRRQIGLVSQ-DVFLFNDTVAENI-AYGR---------PGAT 104
Query: 1583 MEKLVEFDLLKHA-----KKPS----------FTLSGGNKRKLSVAIAMIGDPPIVILDE 1627
E++ E +A + P LSGG ++++++A A++ DPPI+ILDE
Sbjct: 105 REEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDE 164
Query: 1628 PSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCT-----RIGIMVGGQLR 1682
++ +D ++R + + RL + +T ++ A L T RI ++ G++
Sbjct: 165 ATSALDTESERLVQAALERLM--KNRTTFVI-------AHRLSTIENADRIVVLEDGKIV 215
Query: 1683 CIGSPQHL 1690
G+ + L
Sbjct: 216 ERGTHEEL 223
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 2e-14
Identities = 59/221 (26%), Positives = 118/221 (53%), Gaps = 12/221 (5%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMD--EIR 635
++ + LT+ N ++G +G+GKST +LVG +G+ L+ G ++ D+D +R
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSL-KDIDRHTLR 547
Query: 636 KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESV-VAEMVDEV-----GLADKVN 689
+ + PQ +F ++ E+L + A ++E+ + +AE+ D++ G +++
Sbjct: 548 QFINYLPQEPYIFSG-SILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELS 606
Query: 690 IVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLT 749
++SGG K++++L AL+ DSKV+ILDE TS +D + + + ++ II +
Sbjct: 607 EEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFV- 665
Query: 750 THSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTL 790
H + A++ D+I ++ +G + GS L + G +L
Sbjct: 666 AHRLSVAKQS-DKIIVLDHGKIIEQGSHDELLDRNGFYASL 705
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.0 bits (184), Expect = 3e-14
Identities = 61/231 (26%), Positives = 107/231 (46%), Gaps = 17/231 (7%)
Query: 1488 SLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS------DPKAA 1541
SLTF C +GT G+GK+T + + +G G + I + + K
Sbjct: 31 SLTFKKNKVTCV--IGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRL 88
Query: 1542 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEF-DLLK----HAK 1596
R+ IG QF EY QE +E V +K+ E L++ + K
Sbjct: 89 RKEIGLVFQFP---EYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVK 145
Query: 1597 KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAV 1656
+ F LSGG KR++++A + D ++LDEP+ G+DP + + RL+ K +
Sbjct: 146 RSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKR-I 204
Query: 1657 ILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEV 1707
I+ TH+M++ + + +M G++ IGSP + + ++E+ P ++
Sbjct: 205 IMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSNQELLTKIEIDPPKL 255
|
Length = 289 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.6 bits (183), Expect = 3e-14
Identities = 62/204 (30%), Positives = 102/204 (50%), Gaps = 7/204 (3%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD---MDEI 634
A+ ++ L + + + + ++G NG+GKST L GL+ P G LV G + T D + I
Sbjct: 17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGID-TGDFSKLQGI 75
Query: 635 RKGLGVCPQY-DILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVR 693
RK +G+ Q + F TV E L + + V + E+GL + +
Sbjct: 76 RKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPK 135
Query: 694 ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-KKGRIILLTTHS 752
LSGG + ++L L + + +I DE TS +DP S + IKK+ +KG+ I+ TH+
Sbjct: 136 TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHN 195
Query: 753 MDEAEELGDRIAIMANGSLKCCGS 776
++E + DRI +M G + G
Sbjct: 196 LEELHD-ADRIIVMDRGKIVLEGE 218
|
Length = 274 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 4e-14
Identities = 61/215 (28%), Positives = 105/215 (48%), Gaps = 19/215 (8%)
Query: 1486 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDI--RSDPKA--- 1540
V ++FSV GE GF G G+G+T ++ + G + G + GKDI RS A
Sbjct: 279 VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKK 338
Query: 1541 -------ARRLIGYCPQFDALLEYLTVQEHLEL--YARIKGVAEYRMDDVVMEKLVEFDL 1591
+RR G+ P F + + + + L+ Y G+ + E E
Sbjct: 339 GMAYITESRRDNGFFPNFS-IAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLA 397
Query: 1592 LK-HAKKPSFT-LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLST 1649
LK H+ + T LSGGN++K+ ++ + P ++I DEP+ G+D AK +++V+ +L+
Sbjct: 398 LKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD 457
Query: 1650 RQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCI 1684
GK +++ + + E +C RI + G+L I
Sbjct: 458 -DGKV-ILMVSSELPEIITVCDRIAVFCEGRLTQI 490
|
Length = 510 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 4e-14
Identities = 63/211 (29%), Positives = 101/211 (47%), Gaps = 33/211 (15%)
Query: 1467 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1526
LR+L YPG + ++ + GE LG +G+GK+T L+ ++G P G
Sbjct: 337 LRDLSAGYPGAPP-----VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGE 391
Query: 1527 AFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHL----------ELYA--RIKGV 1573
+ G + S D RR + C Q DA L TV+E+L EL+A G+
Sbjct: 392 VTLDGVPVSSLDQDEVRRRVSVCAQ-DAHLFDTTVRENLRLARPDATDEELWAALERVGL 450
Query: 1574 AEY--RMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTG 1631
A++ + D + L E LSGG +++L++A A++ D PI++LDEP+
Sbjct: 451 ADWLRALPDGLDTVLGE-----GGA----RLSGGERQRLALARALLADAPILLLDEPTEH 501
Query: 1632 MDPIAKRFMWEVISRLSTRQGKTAVILTTHS 1662
+D + E + L+ G+T V+L TH
Sbjct: 502 LDAETADELLEDL--LAALSGRT-VVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 4e-14
Identities = 62/224 (27%), Positives = 117/224 (52%), Gaps = 23/224 (10%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTG- 618
IQ+ ++ Y G A+ + L + + L LLG +GAGKS+ + +L L P +G
Sbjct: 3 IQLNGINCFY----GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT 58
Query: 619 -----DALVFGKNITA-DMDEIRKGLG-VCPQYDILFPELTVREHL--EMFAVLKGVKEE 669
+ F K + + E+R+ +G V QY+ L+P LTV+++L VL K++
Sbjct: 59 LNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN-LWPHLTVQQNLIEAPCRVLGLSKDQ 117
Query: 670 LLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYS 729
L ++++ + L + LSGG ++++++ AL+ + +V++ DEPT+ +DP
Sbjct: 118 ALARAE-KLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP-- 174
Query: 730 MRLTWQLIKKIKK----GRIILLTTHSMDEAEELGDRIAIMANG 769
+T Q++ I++ G ++ TH ++ A + R+ M NG
Sbjct: 175 -EITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENG 217
|
Length = 242 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 5e-14
Identities = 63/240 (26%), Positives = 109/240 (45%), Gaps = 33/240 (13%)
Query: 1476 GGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIR 1535
R V ++F + G+ +G GAGK+T ++++ P G I G DIR
Sbjct: 345 DNSRQ----GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIR 400
Query: 1536 SDPKAA-RRLIGYCPQFDALLEYLTVQEHL----------ELYARIKGVAEYRMDDVVME 1584
+ +A+ RR I Q DA L ++++++ E+ A + + D +
Sbjct: 401 TVTRASLRRNIAVVFQ-DAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAH---DFIER 456
Query: 1585 KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVI 1644
K +D + LSGG +++L++A A++ DPPI+ILDE ++ +D + + +
Sbjct: 457 KPDGYD--TVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAAL 514
Query: 1645 SRLSTRQGKTAVI----LTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1700
L +G+T I L+T + A RI + G++ GS L R G F L
Sbjct: 515 DEL--MKGRTTFIIAHRLST--VRNA----DRILVFDNGRVVESGSFDELVARGGRFAAL 566
|
Length = 588 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 6e-14
Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 45/197 (22%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I + L Y + + ++ LTL + + L+G NGAGKST + +L G + P +G+
Sbjct: 4 ITLENLSLAYGDRP----LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGE 59
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEM-FAVLKGVKEEL-------- 670
K + +G Q L PE TV +++ F L+ + EL
Sbjct: 60 V-TRPKGLR---------VGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109
Query: 671 ---------------------LESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIAL 709
LE+ E + +G D+ V +LSGG +R+++L AL
Sbjct: 110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRP-VSSLSGGWRRRVALARAL 168
Query: 710 IGDSKVVILDEPTSGMD 726
+ + +++LDEPT+ +D
Sbjct: 169 LEEPDLLLLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 6e-14
Identities = 58/232 (25%), Positives = 110/232 (47%), Gaps = 12/232 (5%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1523
I+ + L Y G A+ + +++ GE LG NGAGK+T ++G P+
Sbjct: 5 ILKVEELNYNYSDGTH-----ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS 59
Query: 1524 DGTAFIFGKDIRSDPKAA---RRLIGYCPQF-DALLEYLTVQEHLELYARIKGVAEYRMD 1579
G GK I K R +G Q D L +V + + A + E +
Sbjct: 60 SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVR 119
Query: 1580 DVVMEKLVEFDLLKHAK-KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKR 1638
V + ++ ++H K KP+ LS G K+++++A ++ +P +++LDEP+ G+DP+
Sbjct: 120 KRV-DNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVS 178
Query: 1639 FMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
+ +++ + G T +I TH ++ C + +M G++ G+P+ +
Sbjct: 179 EIMKLLVEMQKELGLTIII-ATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 229
|
Length = 283 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 6e-14
Identities = 58/203 (28%), Positives = 103/203 (50%), Gaps = 18/203 (8%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP----PTTGDALVFGKNITA-DMD 632
+ + L + + +AL+G +G+GKST LV LIP +G L+ G ++ +
Sbjct: 17 VLRDISLDIPAGETVALVGPSGSGKST----LVNLIPRFYDVDSGRILIDGHDVRDYTLA 72
Query: 633 EIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVA----EMVDEVGLADKV 688
+R+ +G+ Q LF + TV E++ + +EE+ E+ A E + E+
Sbjct: 73 SLRRQIGLVSQDVFLFND-TVAENI-AYGRPGATREEVEEAARAANAHEFIMELPEGYDT 130
Query: 689 NIVVRA--LSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRII 746
I R LSGG ++++++ AL+ D ++ILDE TS +D S RL ++++ K R
Sbjct: 131 VIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTT 190
Query: 747 LLTTHSMDEAEELGDRIAIMANG 769
+ H + E DRI ++ +G
Sbjct: 191 FVIAHRLSTIEN-ADRIVVLEDG 212
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 6e-14
Identities = 66/236 (27%), Positives = 112/236 (47%), Gaps = 18/236 (7%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA----DMDE 633
AV+ + LTL Q L L+G +G+GKST L+ LIP G+ G++I +M
Sbjct: 302 AVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS-QGEIRFDGQDIDGLSRKEMRP 360
Query: 634 IRKGLGVCPQ--YDILFPELTVREHL-EMFAV--LKGVKEELLESVVAEMVDEVGLADKV 688
+R+ + V Q Y L P +TV + + E V K E + V+ + EVGL
Sbjct: 361 LRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALE-EVGL--DP 417
Query: 689 NIVVR---ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRI 745
R SGG ++++++ ALI ++++LDEPTS +D L++ +++
Sbjct: 418 ATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHG 477
Query: 746 I--LLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKSAPDA 799
+ L +H + L R+ +M +G + G + + YT L+ +A D
Sbjct: 478 LSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTRALLAAAFDI 533
|
Length = 534 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 6e-14
Identities = 59/196 (30%), Positives = 99/196 (50%), Gaps = 22/196 (11%)
Query: 590 QILALLGHNGAGKSTTISML-----VGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQY 644
+ AL+G +GAGK+T +++L G+I T GD LV G+ + + +G Q
Sbjct: 790 TLTALMGASGAGKTTLLNVLAERVTTGVI--TGGDRLVNGRPLDSSFQRS---IGYVQQQ 844
Query: 645 DILFPELTVREHLEMFAVLKGVKEELLE---SVVAEMVDEVGLADKVNIVV----RALSG 697
D+ P TVRE L A L+ K V E++ + + + VV L+
Sbjct: 845 DLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNV 904
Query: 698 GMKRKLSLGIALIGDSKVVI-LDEPTSGMDPYSMRLTWQLIKKI-KKGRIILLTTH--SM 753
+++L++G+ L+ K+++ LDEPTSG+D + +L++K+ G+ IL T H S
Sbjct: 905 EQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSA 964
Query: 754 DEAEELGDRIAIMANG 769
EE DR+ ++ G
Sbjct: 965 ILFEEF-DRLLLLQKG 979
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 7e-14
Identities = 69/283 (24%), Positives = 128/283 (45%), Gaps = 47/283 (16%)
Query: 1445 DIDVQVERN-RVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLG 1503
I + VL+ S + + +RNL ++ G K+ A+ ++ + F+G
Sbjct: 5 GITLMALPLLDVLNLSDEQTALEVRNL-NLFYGDKQ-----ALFDISMRIPKNRVTAFIG 58
Query: 1504 TNGAGKTTTLSMISG-----EEYPTDGTAFIFGKDIRSDPK----AARRLIGYCPQ---- 1550
+G GK+T L + + +G + G++I D K RR +G Q
Sbjct: 59 PSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNI-YDKKVDVAELRRRVGMVFQRPNP 117
Query: 1551 FDALLEYLTVQEHLELYARIKGVAEYR-MDDVVMEKLVEFDLLKHAK----KPSFTLSGG 1605
F ++ E++ R++G+ R +D+ V L L K + +F LSGG
Sbjct: 118 FPK-----SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGG 172
Query: 1606 NKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNE 1665
+++L +A A+ +P +++LDEP++ +DPI+ + E+I+ L + K +++ TH+M +
Sbjct: 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS---KYTIVIVTHNMQQ 229
Query: 1666 AQALCTRIGIMVGGQLRCIG-------SPQHLKT------RFG 1695
A + M G+L G SP +T R+G
Sbjct: 230 AARVSDYTAFMYMGKLVEYGDTDTLFTSPAKKQTEDYITGRYG 272
|
Length = 272 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 7e-14
Identities = 62/264 (23%), Positives = 115/264 (43%), Gaps = 39/264 (14%)
Query: 1468 RNLRKVYPGG---KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
L Y G + + +++++ S+++GE LG +G GK+T ++ G E P+
Sbjct: 7 SGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQ 66
Query: 1525 GTAFIFGKDI----RSDPKAARRLIGYCPQFDAL----------------LEYLTVQEHL 1564
G G+ + R+ KA RR I Q D++ L +L L
Sbjct: 67 GNVSWRGEPLAKLNRAQRKAFRRDIQMVFQ-DSISAVNPRKTVREIIREPLRHLL---SL 122
Query: 1565 ELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1624
+ R+ +E M + V+ D K LSGG +++ +A A+ +P ++I
Sbjct: 123 DKAERLARASE-------MLRAVDLD-DSVLDKRPPQLSGGQLQRVCLARALAVEPKLLI 174
Query: 1625 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL--- 1681
LDE + +D + + + ++ +L + G TA + TH + + C R+ +M GQ+
Sbjct: 175 LDEAVSNLDLVLQAGVIRLLKKLQQQFG-TACLFITHDLRLVERFCQRVMVMDNGQIVET 233
Query: 1682 RCIGSPQHLKTRFGNFLELEVKPT 1705
+ +G + G L+ V P
Sbjct: 234 QPVGDKLTFSSPAGRVLQNAVLPA 257
|
Length = 268 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 8e-14
Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 38/163 (23%)
Query: 1502 LGTNGAGKTTTLSMISGEEYPTDGTAFIFGK---DIRSDPKAARRLIGYCPQFDALLEYL 1558
+G +GAGKTT L +++G + T G I G+ + R K +R GY Q D L
Sbjct: 39 MGESGAGKTTLLDVLAGRK--TAGV--ITGEILINGRPLDKNFQRSTGYVEQQDVHSPNL 94
Query: 1559 TVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIG 1618
TV+E L A ++G LS +++L++ + +
Sbjct: 95 TVREALRFSALLRG-----------------------------LSVEQRKRLTIGVELAA 125
Query: 1619 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1661
P I+ LDEP++G+D A + + +L+ G+ ++ T H
Sbjct: 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLA-DSGQA-ILCTIH 166
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 8e-14
Identities = 53/186 (28%), Positives = 104/186 (55%), Gaps = 7/186 (3%)
Query: 584 LTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEI----RKGL 638
L +Y +++A++G +G+GKST +++L L PT+G V G+++ T D D + R+
Sbjct: 29 LDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHF 88
Query: 639 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGG 698
G Q L LT +++E+ AV G++ + E++ +GL D+V LSGG
Sbjct: 89 GFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGG 148
Query: 699 MKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAE 757
++++S+ AL+ +V++ DEPT +D +S ++ +++ +G +++ TH A
Sbjct: 149 QQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAA 208
Query: 758 ELGDRI 763
+ +R+
Sbjct: 209 Q-AERV 213
|
Length = 648 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (181), Expect = 8e-14
Identities = 60/209 (28%), Positives = 109/209 (52%), Gaps = 18/209 (8%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIPP--TTGDALVFGKNITADM- 631
AV + + + A++G +G GKST I+ + LIP TTG + G++I
Sbjct: 54 AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT 113
Query: 632 DEI--RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKE-ELLESVV------AEMVDEV 682
DE+ RK +G+ Q FP+ ++ +++ L G+ + + LE +V A + DEV
Sbjct: 114 DEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEV 172
Query: 683 GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK 742
+D+++ LSGG +++L + L + ++++LDEPTS +DP + LI++++
Sbjct: 173 --SDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG 230
Query: 743 GRIILLTTHSMDEAEELGDRIAIMANGSL 771
I++ TH+M +A + D G L
Sbjct: 231 SYTIMIVTHNMQQASRVSDYTMFFYEGVL 259
|
Length = 286 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.1 bits (187), Expect = 8e-14
Identities = 59/218 (27%), Positives = 115/218 (52%), Gaps = 20/218 (9%)
Query: 1485 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1544
A+++++F V GE G +G NG+GK+T ++I+G P GT D K + L
Sbjct: 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV---------DIKGSAAL 89
Query: 1545 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEF-DLLKHAKKPSFTLS 1603
I L LT E++EL + G+ + ++ +++ +++EF D+ K +P T S
Sbjct: 90 IAIS---SGLNGQLTGIENIELKGLMMGLTKEKIKEII-PEIIEFADIGKFIYQPVKTYS 145
Query: 1604 GGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLS--TRQGKTAVILTTH 1661
G K +L AI++ +P I+++DE + D + F + + +++ QGKT + +H
Sbjct: 146 SGMKSRLGFAISVHINPDILVIDEALSVGD---QTFTKKCLDKMNEFKEQGKT-IFFISH 201
Query: 1662 SMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLE 1699
S+++ ++ CT+ + GQ++ G + + + FL+
Sbjct: 202 SLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDEFLK 239
|
Length = 549 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 9e-14
Identities = 65/269 (24%), Positives = 122/269 (45%), Gaps = 30/269 (11%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPT--- 616
+ IR L + + G AV + + + LAL+G +G+GKS T ++GL+P
Sbjct: 7 LSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAA 66
Query: 617 --TGDALVFGKNI-TADMDEIRKGLGVCPQYDI----------LFPELTVREHL-EMFAV 662
+G L G+++ A ++R G I L P T+ + L E+ +
Sbjct: 67 HPSGSILFDGEDLLAASERQLRGVRGN----KIGMIFQEPMTSLNPLHTIGKQLAEVLRL 122
Query: 663 LKGVKEELLESVVAEMVDEVGLADKVNIVVR---ALSGGMKRKLSLGIALIGDSKVVILD 719
+G+ + E+++ VG+ + + LSGG ++++ + +AL + ++I D
Sbjct: 123 HRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIAD 182
Query: 720 EPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSS 777
EPT+ +D L+K+++ G IL TH + + DR+ +M +G + G++
Sbjct: 183 EPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTT 242
Query: 778 --LFLKHQYGVGYTLTLVKSAPDASAAAD 804
LF Q+ YT L+ + P
Sbjct: 243 ETLFAAPQH--PYTRKLLAAEPSGDPPPL 269
|
Length = 534 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 9e-14
Identities = 56/202 (27%), Positives = 112/202 (55%), Gaps = 11/202 (5%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD--MDEIR 635
A++S+ L + + +AL+G +G+GKST ++++ P +G L+ G ++ AD + +R
Sbjct: 347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDL-ADYTLASLR 405
Query: 636 KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVA----EMVDEVGLADKVNIV 691
+ + + Q +LF + T+ ++ + + E+ ++ A + VD++ L I
Sbjct: 406 RQVALVSQDVVLFND-TIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIG 464
Query: 692 VRA--LSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLT 749
LSGG +++L++ AL+ D+ ++ILDE TS +D S RL ++++ +GR L+
Sbjct: 465 ENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVI 524
Query: 750 THSMDEAEELGDRIAIMANGSL 771
H + E+ DRI +M +G +
Sbjct: 525 AHRLSTIEK-ADRIVVMDDGRI 545
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 1e-13
Identities = 54/210 (25%), Positives = 107/210 (50%), Gaps = 18/210 (8%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT--ADMDEIRK 636
V + ++ +IL G G+G++ ++ L G+ G+ + GK+I+ + +D ++K
Sbjct: 279 VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKK 338
Query: 637 GLGVCPQY---DILFPELTVREHLEMFAVLK--------GVKEELLESVVAEMVDEVGLA 685
G+ + + FP ++ +++ + LK G+ E+ E AE E+ LA
Sbjct: 339 GMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQREL-LA 397
Query: 686 DK---VNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-K 741
K VN + LSGG ++K+ + L +V+I DEPT G+D + +++++++
Sbjct: 398 LKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD 457
Query: 742 KGRIILLTTHSMDEAEELGDRIAIMANGSL 771
G++IL+ + + E + DRIA+ G L
Sbjct: 458 DGKVILMVSSELPEIITVCDRIAVFCEGRL 487
|
Length = 510 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 1e-13
Identities = 37/212 (17%), Positives = 76/212 (35%), Gaps = 21/212 (9%)
Query: 273 YTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLYMMGLKDGIFHLSWF 332
+ ++G+L L L + V EKE +I+E L + G+ + L
Sbjct: 85 PLFNPNSGYAYYLLGLLLFLLILIGALIIALSIVEEKESRIKERLLVSGVSPLKYLLGKI 144
Query: 333 ITYAAQFAVSSGIITACTMDSLFKYSDKTVVFTYFFSFGLSAITLSFFISTFFARAKTAV 392
+ + II + + ++ F +GL+ I L + + F ++ A+
Sbjct: 145 LGDLLVGLIQLLIILLLLFGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNSEAAI 204
Query: 393 AVG---TLSFLGAFFPYYTVNDEAVPMVLKVIASLLSPTAFALGSVNFADYERAHVGLRW 449
V L G F + + + +P L+ I S++ A G +
Sbjct: 205 LVISILILLLSGFFGGLFPLPN--MPSFLQWIFSIIPFFAPIDGLLRIIYG--------- 253
Query: 450 SNMWRASSGVNFLVCLLMMLLDTLLYGVIGLY 481
L+ L+++LL ++ ++ L
Sbjct: 254 -------DLAEILLSLIILLLFGVVLLLLALL 278
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 1e-13
Identities = 57/226 (25%), Positives = 99/226 (43%), Gaps = 20/226 (8%)
Query: 1485 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG----EEYPTDGTAFIFGKDIRSDPKA 1540
V L S++ GE +G +G+GK+ T I G T G + G+ + P +
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPL--LPLS 58
Query: 1541 AR-RLIGYCPQ--FDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHA-- 1595
R R I Q A T+ H R G + +++E L L
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEV 118
Query: 1596 -KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKT 1654
KK F LSGG +++ +A+A++ +PP +I DEP+T +D + + + +++ L G T
Sbjct: 119 LKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFG-T 177
Query: 1655 AVILTTHSMNEAQALCTRIGIMVGGQL-------RCIGSPQHLKTR 1693
++L TH + + + +M G++ +P+H TR
Sbjct: 178 GILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.0 bits (181), Expect = 1e-13
Identities = 59/228 (25%), Positives = 109/228 (47%), Gaps = 33/228 (14%)
Query: 1461 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTL------- 1513
+ +RN Y + K +H L ++ + F+G +G GK+T L
Sbjct: 77 HANVFEIRNFNFWY----MNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLN 132
Query: 1514 SMISGEEYPTDGTAFIFGKDIRSDPKAA---RRLIGYCPQFDALLEYLTVQEHLELYARI 1570
+I G + +G + G + RS ++ R IG Q E +++ +++ R
Sbjct: 133 DLIEGTSH--EGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRN 189
Query: 1571 KGVAEYRMDDVVMEKLVEFDLLKHA---------KKPSFTLSGGNKRKLSVAIAMIGDPP 1621
G+ + + ++EK+VE L A K LSGG +++L +A A+ +P
Sbjct: 190 NGINDRK----ILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPE 245
Query: 1622 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQAL 1669
++++DEP++ +DPIA + E+I L + K ++I+ THSM +AQ +
Sbjct: 246 VLLMDEPTSALDPIATAKIEELILEL---KKKYSIIIVTHSMAQAQRI 290
|
Length = 329 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 1e-13
Identities = 52/204 (25%), Positives = 111/204 (54%), Gaps = 15/204 (7%)
Query: 582 LQLTLYENQILALLGHNGAGKSTTI---SMLVGLIP--PTTGDALVFGKNI-TADMDEI- 634
+ L +Y+ ++ A +G +G GKST + + + +P G+ + G ++ + D + +
Sbjct: 24 INLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83
Query: 635 -RKGLGVCPQYDILFPELTVREHLEMFAVLKGV--KEELLESVVAEMVDEVGL----ADK 687
R +G+ Q FP+ ++ +++ L G+ ++ L+ +V + + VGL D+
Sbjct: 84 LRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDR 142
Query: 688 VNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIIL 747
+ LSGG +++L + A+ ++++DEP S +DP + + LI+++KK I+
Sbjct: 143 LKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTII 202
Query: 748 LTTHSMDEAEELGDRIAIMANGSL 771
+ THSM +A+++ DR+A +G +
Sbjct: 203 VVTHSMKQAKKVSDRVAFFQSGRI 226
|
Length = 251 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 1e-13
Identities = 62/222 (27%), Positives = 110/222 (49%), Gaps = 22/222 (9%)
Query: 565 LHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGL-----IPPTTGD 619
LH Y K A+ + + +N+I AL+G +G+GKST + L + I TG
Sbjct: 26 LHVYYGKKE----AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQ 81
Query: 620 ALVFGKNITA---DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKE-ELLESVV 675
L G +I ++ E+RK +G+ Q F + ++ E++ GVK+ ++L+ +V
Sbjct: 82 ILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAK-SIYENITFALERAGVKDKKVLDEIV 140
Query: 676 ------AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYS 729
A + D+V D ++ LSGG +++L + A+ ++++DEP S +DP S
Sbjct: 141 ETSLKQAALWDQV--KDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPIS 198
Query: 730 MRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 771
+ + ++KK I++ TH+M +A D A G L
Sbjct: 199 TMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDL 240
|
Length = 267 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 2e-13
Identities = 58/235 (24%), Positives = 111/235 (47%), Gaps = 31/235 (13%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG----- 1518
I + NL Y G+ K A+ ++ + + +G +G GK+T L ++
Sbjct: 1 AIEIENLNLFY--GE----KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLV 54
Query: 1519 EEYPTDGTAFIFGKDI---RSDPKAARRLIGYCPQ----FDALLEYLTVQEHLELYARIK 1571
+G G+DI + D RR +G Q F +++ +++ R+
Sbjct: 55 PGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-----MSIYDNIAYGPRLH 109
Query: 1572 GV-AEYRMDDVVMEKLVE---FDLLK-HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILD 1626
G+ + +D++V E L + +D +K + LSGG +++L +A A+ +P +++LD
Sbjct: 110 GIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLD 169
Query: 1627 EPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
EP++ +DPIA + E+I L K +++ TH+M +A + R G+L
Sbjct: 170 EPTSALDPIATGKIEELIQELKK---KYTIVIVTHNMQQAARISDRTAFFYDGEL 221
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 2e-13
Identities = 61/210 (29%), Positives = 102/210 (48%), Gaps = 26/210 (12%)
Query: 1490 TFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGK--DIRSDPKAARRLIGY 1547
+FSV+AGE G G GAG++ + ++ G T G ++ GK DIRS A R I
Sbjct: 273 SFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIML 332
Query: 1548 CPQ---FDALLEYLTVQEHLELYAR---------IKGVAEYRMDDVVMEKLVEFDLLK-- 1593
CP+ + ++ +V +++ + AR I E D + L +K
Sbjct: 333 CPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLN----IKTP 388
Query: 1594 HAKKPSFTLSGGNKRK--LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQ 1651
++ LSGGN++K L ++ D +++LDEP+ G+D AK ++ VI L+ Q
Sbjct: 389 SREQLIMNLSGGNQQKAILGRWLSE--DMKVILLDEPTRGIDVGAKHEIYNVIYELA-AQ 445
Query: 1652 GKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
G AV+ + + E + RI +M G++
Sbjct: 446 GV-AVLFVSSDLPEVLGVADRIVVMREGRI 474
|
Length = 501 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 2e-13
Identities = 63/257 (24%), Positives = 116/257 (45%), Gaps = 42/257 (16%)
Query: 1460 VDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGE 1519
D+ I+ ++NL V+ K+ + VA+++++++ + + + +G +G+GK+T ++ +G
Sbjct: 17 SDDIILRVKNLYCVF-DEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL 75
Query: 1520 EYPTDGTAFIFGKDIRSDPKAA-------------------RRLIGYCPQFDALLEYL-- 1558
GT + DI K RR + QF EY
Sbjct: 76 IKSKYGTIQV--GDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFP---EYQLF 130
Query: 1559 --TVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPS------FTLSGGNKRKL 1610
T+++ + GV + +KL +F L K S F LSGG KR++
Sbjct: 131 KDTIEKDIMFGPVALGVKKSEA-----KKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRV 185
Query: 1611 SVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALC 1670
++A + P I+I DEP+ G+DP + M ++I + KT V + TH+M +
Sbjct: 186 AIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILD-AKANNKT-VFVITHTMEHVLEVA 243
Query: 1671 TRIGIMVGGQLRCIGSP 1687
+ +M G++ G+P
Sbjct: 244 DEVIVMDKGKILKTGTP 260
|
Length = 320 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 66/230 (28%), Positives = 110/230 (47%), Gaps = 22/230 (9%)
Query: 1485 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT------AFIFGKDIRSDP 1538
A+ +T GE LG +GAGK++ L +++ E P GT F F K
Sbjct: 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTP--SD 74
Query: 1539 KAARRL---IGYCPQFDALLEYLTVQEHL-ELYARIKGVAEYRMDDVVMEKLVEFDLLKH 1594
KA R L +G Q L +LTVQ++L E R+ G+++ + + L L +
Sbjct: 75 KAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPY 134
Query: 1595 AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKT 1654
A + LSGG ++++++A A++ +P +++ DEP+ +DP + +I L+ G T
Sbjct: 135 ADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELA-ETGIT 193
Query: 1655 AVILTTHSMNEAQALCTRIGIMVGGQL------RCIGSPQHLKTRFGNFL 1698
VI+ TH + A+ +R+ M G + C PQ F N+L
Sbjct: 194 QVIV-THEVEVARKTASRVVYMENGHIVEQGDASCFTQPQ--TEAFKNYL 240
|
Length = 242 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.9 bits (176), Expect = 2e-13
Identities = 58/221 (26%), Positives = 105/221 (47%), Gaps = 18/221 (8%)
Query: 1483 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIR--SDPKA 1540
+LT + G +G NG GK+T L +S P G ++ G+ I+ + +
Sbjct: 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEV 79
Query: 1541 ARRLIGYCPQFDALLEYLTVQE--------HLELYARIKGVAEYRMDDVVMEKLVEFDLL 1592
ARR IG Q +TVQE H L+ R + E + V + + +
Sbjct: 80 ARR-IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDE----EAVTKAMQATGIT 134
Query: 1593 KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1652
A + TLSGG +++ +A+ + + I++LDEP+T +D + + E++S L+ +G
Sbjct: 135 HLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKG 194
Query: 1653 KT-AVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692
T A +L H +N+A + + + G++ G+P+ + T
Sbjct: 195 YTLAAVL--HDLNQACRYASHLIALREGKIVAQGAPKEIVT 233
|
Length = 265 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 2e-13
Identities = 64/210 (30%), Positives = 111/210 (52%), Gaps = 16/210 (7%)
Query: 1486 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP--TDGTAFIFGK--DIRSDPKAA 1541
V ++FS++ GE G G GAG+T + + G YP +G FI GK IR+ +A
Sbjct: 278 VDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGA-YPGRWEGEIFIDGKPVKIRNPQQAI 336
Query: 1542 RRLIGYCPQ---FDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK-HAKK 1597
+ I P+ D ++ + V +++ L A + R+DD K + + + K
Sbjct: 337 AQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKT 396
Query: 1598 PSF-----TLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1652
S LSGGN++K +A ++ +P I+ILDEP+ G+D AK ++++I++L +QG
Sbjct: 397 ASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLV-QQG 455
Query: 1653 KTAVILTTHSMNEAQALCTRIGIMVGGQLR 1682
A+I+ + + E L R+ +M G+L+
Sbjct: 456 -VAIIVISSELPEVLGLSDRVLVMHEGKLK 484
|
Length = 506 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (174), Expect = 3e-13
Identities = 57/236 (24%), Positives = 111/236 (47%), Gaps = 23/236 (9%)
Query: 1459 SVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG 1518
+ AII NL Y +D K A++++ + +G +G GK+T L ++
Sbjct: 2 PKNEAIIETENLNLFY-----TDFK-ALNNINIKILKNSITALIGPSGCGKSTFLRTLNR 55
Query: 1519 -----EEYPTDGTAFIFGKDIRS---DPKAARRLIGYCPQFDALLEYLTVQEHLELYARI 1570
E +G GK+I S D RR IG Q +++ +++ +I
Sbjct: 56 MNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPF-LMSIYDNISYGPKI 114
Query: 1571 KGVAEYR-MDDVVMEKLVEFDLLKHAK----KPSFTLSGGNKRKLSVAIAMIGDPPIVIL 1625
G + + +D++V + L + L K + +LSGG +++L +A + +P ++++
Sbjct: 115 HGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILM 174
Query: 1626 DEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
DEP++ +DPI+ + E+I L + +I+ TH+M +A + R + G +
Sbjct: 175 DEPTSALDPISTGKIEELIINL---KESYTIIIVTHNMQQAGRISDRTAFFLNGCI 227
|
Length = 254 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 3e-13
Identities = 60/218 (27%), Positives = 110/218 (50%), Gaps = 8/218 (3%)
Query: 1478 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD 1537
K +H++ ++ GE +G +G+GK+T L I+ E T G + G + D
Sbjct: 9 KHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVN-D 67
Query: 1538 PKAARRLI----GYCPQFDALLEYLTVQEHLELYA-RIKGVAEYRMDDVVMEKLVEFDLL 1592
PK RLI G Q L +LT E++ R++G ++ + E L + L
Sbjct: 68 PKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLA 127
Query: 1593 KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1652
+ A LSGG ++++++A A+ P +++ DEP++ +DP + + +V+ L+ +G
Sbjct: 128 ERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EG 186
Query: 1653 KTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
T VI+ TH + A+ + +R+ + G++ G PQ L
Sbjct: 187 MTMVIV-THEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223
|
Length = 240 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 3e-13
Identities = 48/200 (24%), Positives = 97/200 (48%), Gaps = 21/200 (10%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGK-NITADMDEIRK 636
A++ + L YE ++ L+G NG+GKST +++ G + PT G G+ ++ A I
Sbjct: 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIA----ISA 94
Query: 637 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALS 696
GL +LT E++E + G K + ++++ ++++ L + + V+ S
Sbjct: 95 GLS---------GQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYS 145
Query: 697 GGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI----KKGRIILLTTHS 752
GM+ KL I + + ++++DE S D + + KI ++ + I +H+
Sbjct: 146 SGMRAKLGFSINITVNPDILVIDEALSVGD---QTFAQKCLDKIYEFKEQNKTIFFVSHN 202
Query: 753 MDEAEELGDRIAIMANGSLK 772
+ + + +IA + G LK
Sbjct: 203 LGQVRQFCTKIAWIEGGKLK 222
|
Length = 264 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 4e-13
Identities = 63/217 (29%), Positives = 103/217 (47%), Gaps = 22/217 (10%)
Query: 1489 LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDI----RSDPKAARRL 1544
++ +V G+ +G +G GKTT L +I G+ P G G++I RS R+
Sbjct: 26 ISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR 85
Query: 1545 IGYCPQFDALLEYLTV--------QEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAK 1596
+ Q AL + V +EH +L A + + VM KL L AK
Sbjct: 86 MSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPL-------LHSTVMMKLEAVGLRGAAK 138
Query: 1597 -KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTA 1655
PS LSGG R+ ++A A+ +P +++ DEP G DPI + ++IS L++ G T
Sbjct: 139 LMPS-ELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTC 197
Query: 1656 VILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692
V++ +H + E ++ I+ ++ GS Q L+
Sbjct: 198 VVV-SHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233
|
Length = 269 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 4e-13
Identities = 52/188 (27%), Positives = 95/188 (50%), Gaps = 12/188 (6%)
Query: 1503 GTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPK-----AARRLIGYCPQFDALLEY 1557
G +G+GKT+ ++MI+G P +G + G+ + K +R IGY Q L +
Sbjct: 31 GPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPH 90
Query: 1558 LTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMI 1617
TV+ +L Y K + D +V L LL + P TLSGG K+++++ A++
Sbjct: 91 YTVRGNLR-YGMWKSMRAQ-FDQLV-ALLGIEHLLD--RYPG-TLSGGEKQRVAIGRALL 144
Query: 1618 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMV 1677
P ++++DEP +D KR + + RL + ++ +HS++E L R+ ++
Sbjct: 145 TAPELLLMDEPLASLDLPRKREILPYLERLR-DEINIPILYVSHSLDEVLRLADRVVVLE 203
Query: 1678 GGQLRCIG 1685
G+++ G
Sbjct: 204 NGKVKASG 211
|
Length = 352 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 4e-13
Identities = 64/255 (25%), Positives = 114/255 (44%), Gaps = 42/255 (16%)
Query: 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1522
++ + L K Y GGK ++F + GE G +G +G+GK+T L ++G P
Sbjct: 2 PLLQVSGLSKSYGGGK------GCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP 55
Query: 1523 TDGTAFIFGKD-----IRSDPKAARRLI-----GYCPQ--FDALLEYLT----VQEHL-- 1564
GTA + + +A RR + G+ Q D L ++ + E L
Sbjct: 56 DHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMA 115
Query: 1565 ---ELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1621
Y I+ A+ +++V E D + P SGG +++L +A ++ P
Sbjct: 116 IGARHYGNIRATAQDWLEEV------EIDPTRIDDLPR-AFSGGMQQRLQIARNLVTRPR 168
Query: 1622 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
+V +DEP+ G+D + + +++ L G AVI+ TH + A+ L R+ +M G++
Sbjct: 169 LVFMDEPTGGLDVSVQARLLDLLRGLVRDLG-LAVIIVTHDLGVARLLAQRLLVMQQGRV 227
Query: 1682 -------RCIGSPQH 1689
+ + PQH
Sbjct: 228 VESGLTDQVLDDPQH 242
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (174), Expect = 5e-13
Identities = 56/204 (27%), Positives = 105/204 (51%), Gaps = 5/204 (2%)
Query: 572 KRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD- 630
K + +N + ++ + + ++++G NG+GKSTT ++ GL G + G+ +TA+
Sbjct: 16 KESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAEN 75
Query: 631 MDEIRKGLGVCPQY-DILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVN 689
+ +R+ +G+ Q D F TV + + +G+ E + V E + V + D
Sbjct: 76 VWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKT 135
Query: 690 IVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGR--IIL 747
LSGG K+++++ + +++ILDE TS +DP + ++I +IK+ +L
Sbjct: 136 REPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVL 195
Query: 748 LTTHSMDEAEELGDRIAIMANGSL 771
TH +DEA DRI +M G +
Sbjct: 196 SITHDLDEAAS-SDRILVMKAGEI 218
|
Length = 277 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 5e-13
Identities = 59/223 (26%), Positives = 99/223 (44%), Gaps = 39/223 (17%)
Query: 1483 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTL-------SMISGEEYPTDGTAFIFGKDI- 1534
K A++ +T S+ +G +G GK+T L +I G G G++I
Sbjct: 19 KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR--ITGDILYNGENIM 76
Query: 1535 --RSDPKAARRLIGYCPQ----FDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVE 1588
+D A RR IG Q F ++ E++ RI G + D ++EK
Sbjct: 77 DSGADVVALRRKIGMVFQRPNPFPK-----SIYENVAYGPRIHGEKNKKTLDTIVEKS-- 129
Query: 1589 FDLLKHA----------KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKR 1638
LK A + +LSGG +++L +A + +P ++++DEP + +DPIA
Sbjct: 130 ---LKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATA 186
Query: 1639 FMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
+ ++I L VI+ TH+M +A + G M G+L
Sbjct: 187 KIEDLIEDLKKEY---TVIIVTHNMQQAARVSDYTGFMYLGKL 226
|
Length = 253 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 5e-13
Identities = 50/184 (27%), Positives = 102/184 (55%), Gaps = 11/184 (5%)
Query: 592 LALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPEL 651
+A+LG +GAGKST ++++ G + P +G + G++ T R+ + + Q + LF L
Sbjct: 28 VAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTT-TPPSRRPVSMLFQENNLFSHL 86
Query: 652 TVREH--LEMFAVLK--GVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGI 707
TV ++ L + LK + E L + ++G+ D + + LSGG +++++L
Sbjct: 87 TVAQNIGLGLNPGLKLNAAQREKLH----AIARQMGIEDLLARLPGQLSGGQRQRVALAR 142
Query: 708 ALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRII--LLTTHSMDEAEELGDRIAI 765
L+ + +++LDEP S +DP + L+ ++ + R + L+ +HS+++A + R +
Sbjct: 143 CLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLV 202
Query: 766 MANG 769
+A+G
Sbjct: 203 VADG 206
|
Length = 232 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (173), Expect = 5e-13
Identities = 63/237 (26%), Positives = 117/237 (49%), Gaps = 25/237 (10%)
Query: 1478 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIR-- 1535
KR + ++ AG+ +G++G+GK+T L I+ E P++G+ + G+ I
Sbjct: 13 KRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLV 72
Query: 1536 ---------SDPKAAR----RLIGYCPQFDALLEYLTVQEH-LELYARIKGV--AEYRMD 1579
+D R RL F+ L ++TV E+ +E ++ G+ E R
Sbjct: 73 RDKDGQLKVADKNQLRLLRTRLTMVFQHFN-LWSHMTVLENVMEAPIQVLGLSKQEARER 131
Query: 1580 DVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF 1639
V V D K P LSGG ++++S+A A+ +P +++ DEP++ +DP
Sbjct: 132 AVKYLAKVGIDERAQGKYPV-HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGE 190
Query: 1640 MWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN 1696
+ ++ +L+ +GKT V++ TH M A+ + + + + G++ G+P+ L FGN
Sbjct: 191 VLRIMQQLA-EEGKTMVVV-THEMGFARHVSSHVIFLHQGKIEEEGAPEQL---FGN 242
|
Length = 257 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 5e-13
Identities = 69/225 (30%), Positives = 108/225 (48%), Gaps = 18/225 (8%)
Query: 560 IQIRKLHKV--YAT---KRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP 614
+++R L K Y T +R AV L TL E Q LA++G NG+GKST ML G+I
Sbjct: 5 LEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE 64
Query: 615 PTTGDALVFGKNIT-ADMDEIRKGLGVCPQ--YDILFPELTVREHLEMFAVLK-GVKEEL 670
PT+G+ L+ + D + + + Q L P + + L+ L ++ E
Sbjct: 65 PTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQ 124
Query: 671 LESVVAEMVDEVGL-ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYS 729
E + E + +VGL D + L+ G K++L L ALI KV+I DE + +D S
Sbjct: 125 REKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLD-MS 183
Query: 730 MRLTWQLIKKI-----KKGRIILLTTHSMDEAEELGDRIAIMANG 769
MR QLI + K+G + T + + + D++ +M G
Sbjct: 184 MRS--QLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQG 226
|
Length = 267 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 5e-13
Identities = 61/210 (29%), Positives = 110/210 (52%), Gaps = 16/210 (7%)
Query: 1486 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT--DGTAFIFGK--DIRSDPKAA 1541
V ++FS++ GE G G GAG+T + + G YP +G FI GK DIR+ +A
Sbjct: 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGA-YPGKFEGNVFINGKPVDIRNPAQAI 334
Query: 1542 RRLIGYCPQ---FDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLV--EFDLLK--- 1593
R I P+ ++ L V +++ L + R+D +++ LK
Sbjct: 335 RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT 394
Query: 1594 -HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1652
P LSGGN++K +A ++ +P ++ILDEP+ G+D AK ++++I++L+ ++G
Sbjct: 395 ASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLA-QEG 453
Query: 1653 KTAVILTTHSMNEAQALCTRIGIMVGGQLR 1682
A+I+ + + E L R+ ++ G+L+
Sbjct: 454 -VAIIVVSSELAEVLGLSDRVLVIGEGKLK 482
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 5e-13
Identities = 55/206 (26%), Positives = 99/206 (48%), Gaps = 10/206 (4%)
Query: 574 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTT--GDALVFGKNITAD- 630
G A++ + L + + + L G NGAGKST + +L G+ P T G+ G + A
Sbjct: 12 GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASN 71
Query: 631 -MDEIRKGLGVCPQYDILFPELTVREHLEMF--AVLKGVKEELLESV--VAEMVDEVGL- 684
D R G+ + Q L PEL+V E++ + L G + ++ E+ L
Sbjct: 72 IRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLD 131
Query: 685 ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KG 743
AD V V GG ++ + + AL ++++ILDEP+S + + +I+ +K G
Sbjct: 132 ADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHG 191
Query: 744 RIILLTTHSMDEAEELGDRIAIMANG 769
+ +H ++E + + D I ++ +G
Sbjct: 192 VACVYISHKLNEVKAVCDTICVIRDG 217
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (172), Expect = 6e-13
Identities = 53/225 (23%), Positives = 107/225 (47%), Gaps = 22/225 (9%)
Query: 1485 AVHSLTFSVQAGECFGFLGTNGAGKTTTL----SMISGEEYPTDGTAFIFGKDIRSDPKA 1540
A+H++ ++ GE LG +G+GK+T L +I+G++ + G+ ++ + +
Sbjct: 19 ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELL-GRTVQREGRL 77
Query: 1541 ARRL------IGYCPQFDALLEYLTVQEHLELYARIKGVAEYR---------MDDVVMEK 1585
AR + GY Q L+ L+V E++ L + +R ++
Sbjct: 78 ARDIRKSRANTGYIFQQFNLVNRLSVLENV-LIGALGSTPFWRTCFSWFTREQKQRALQA 136
Query: 1586 LVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVIS 1645
L ++ A + TLSGG ++++++A A++ +++ DEP +DP + R + + +
Sbjct: 137 LTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLR 196
Query: 1646 RLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
++ G T V++T H ++ A C RI + G + GS Q
Sbjct: 197 DINQNDGIT-VVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF 240
|
Length = 262 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 6e-13
Identities = 46/227 (20%), Positives = 84/227 (37%), Gaps = 42/227 (18%)
Query: 553 QEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGL 612
+ R I + + +++ +LG G+G ST + L
Sbjct: 2 STLSWRNISFTTGKGRSKIPI-----LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR 56
Query: 613 IPPT---TGDALVFGKNITADMDEIRKGLGV-CPQYDILFPELTVREHLEMFAVLKGVKE 668
GD + + + E G + + D+ FP LTVRE L+ KG
Sbjct: 57 TEGNVSVEGD-IHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKG--- 112
Query: 669 ELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPY 728
N VR +SGG ++++S+ AL+ + V+ D T G+D
Sbjct: 113 --------------------NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSS 152
Query: 729 SMRLTWQLIKKIK------KGRIILLTTHSMDEAEELGDRIAIMANG 769
+ +++K I+ K + + DE +L D++ ++ G
Sbjct: 153 T---ALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEG 196
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (172), Expect = 7e-13
Identities = 58/212 (27%), Positives = 106/212 (50%), Gaps = 16/212 (7%)
Query: 1483 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT-----DGTAFIFGKDI--- 1534
K AV ++ VQ G +G +G GKTT L I+ T G + G+DI
Sbjct: 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGP 76
Query: 1535 RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVE----FD 1590
R DP A RR +G Q ++V +++ ++ G+ + V E+ + +D
Sbjct: 77 RVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWD 136
Query: 1591 LLK-HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLST 1649
+K K P+ LSGG +++L +A A+ +P I+++DEP++ +DP + + ++++ L
Sbjct: 137 EVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDL-- 194
Query: 1650 RQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
+ T +I+ TH+M++A + + G L
Sbjct: 195 -KKVTTIIIVTHNMHQAARVSDTTSFFLVGDL 225
|
Length = 252 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 73.1 bits (179), Expect = 7e-13
Identities = 57/221 (25%), Positives = 103/221 (46%), Gaps = 19/221 (8%)
Query: 560 IQIRKLHKVYATKRGNC-CAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTG 618
I+++ +H G+ A+ + L + + I+ ++G NG GKST + GL P G
Sbjct: 338 IELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEG 397
Query: 619 DALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEM 678
+ L+ G ++AD + Y LF + HL + E +
Sbjct: 398 EILLDGAAVSADSRD---------DYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQY 448
Query: 679 VDEVGLADKVNI------VVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRL 732
+ + +ADKV I ALS G +++L+L A + D +++ DE + DP R
Sbjct: 449 LQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRF 508
Query: 733 TW-QLIKKIKK-GRIILLTTHSMDEAEELGDRIAIMANGSL 771
+ +L+ +K+ G+ I++ +H D+ EL D+I +A G +
Sbjct: 509 FYEELLPDLKRQGKTIIIISHD-DQYFELADQIIKLAAGCI 548
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 8e-13
Identities = 53/203 (26%), Positives = 94/203 (46%), Gaps = 16/203 (7%)
Query: 582 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD--MDEIRKGLG 639
+ L + +IL L G GAG++ L GL P G ++ GK I A + +GL
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV 341
Query: 640 VCP---QYDILFPELTVR------EHLEMFAVLKGVKEE-LLESVVAEMVDEVGLADKVN 689
P Q L+ + + H +K +E +LE + + A++
Sbjct: 342 YLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQA- 400
Query: 690 IVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-KKGRIILL 748
R LSGG ++K+ + L +++I+DEPT G+D + +QLI+ I + +L
Sbjct: 401 --ARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLF 458
Query: 749 TTHSMDEAEELGDRIAIMANGSL 771
+ ++E E++ DR+ +M G +
Sbjct: 459 ISSDLEEIEQMADRVLVMHQGEI 481
|
Length = 510 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (172), Expect = 8e-13
Identities = 61/221 (27%), Positives = 104/221 (47%), Gaps = 26/221 (11%)
Query: 1460 VDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTL------ 1513
+ I+ L K++ G +AV ++ E GF+G +G GK+T L
Sbjct: 3 SEAPIVMDCKLDKIFYG-----NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRM 57
Query: 1514 -SMISGEEYPTDGTAFIFGKDIRS---DPKAARRLIGYC---PQFDALLEYLTVQEHLEL 1566
++ G + +G G+D+ DP RR IG P ++ + V L L
Sbjct: 58 NDLVKG--FRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRL 115
Query: 1567 YARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPS-FTLSGGNKRKLSVAIAMIGDPPIVIL 1625
R KG R+ ++ +D +K K S +LSGG +++L +A A+ +P +++L
Sbjct: 116 -NRYKGDLGDRVKHA-LQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLL 173
Query: 1626 DEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEA 1666
DEP + +DPIA R + E++ L + + L TH+M +A
Sbjct: 174 DEPCSALDPIATRRVEELMVEL---KKDYTIALVTHNMQQA 211
|
Length = 261 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.1 bits (171), Expect = 8e-13
Identities = 58/225 (25%), Positives = 113/225 (50%), Gaps = 18/225 (8%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTG- 618
I+IR ++ Y + + ++ + E QI A++G +G GKST + L + +G
Sbjct: 5 IKIRGVNFFYHKHQ----VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 619 ----DALVFGKNITA---DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK-EEL 670
L+ +NI + D+ +RK +G+ Q FP+ ++ +++ + G +
Sbjct: 61 RLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSR 119
Query: 671 LESVVAEMVDEVGLADKVNIVVR----ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 726
L+ VV + + + L D+V + ALSGG +++L + L + +V+++DEP S +D
Sbjct: 120 LDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALD 179
Query: 727 PYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 771
P S +L++++K+ I + TH+M +A D + G L
Sbjct: 180 PVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDL 224
|
Length = 251 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 9e-13
Identities = 59/236 (25%), Positives = 109/236 (46%), Gaps = 31/236 (13%)
Query: 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMIS----- 1517
I+ + +L VY K+ A++S++ E +G +G+GK+T L I+
Sbjct: 4 PILQVSDL-SVYYNKKK-----ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDL 57
Query: 1518 GEEYPTDGTAFIFGKDI---RSDPKAARRLIGYCPQ----FDALLEYLTVQEHLELYARI 1570
E G+ G +I R+D R+ IG Q F +++ E++ R+
Sbjct: 58 NPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-----MSIYENVVYGLRL 112
Query: 1571 KGVAE-YRMDDVVMEKLVEFDLLKHAK----KPSFTLSGGNKRKLSVAIAMIGDPPIVIL 1625
KG+ + +D+ V + L + K + LSGG ++++ +A + P I++L
Sbjct: 113 KGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILL 172
Query: 1626 DEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
DEP++ +DPI+ + E + L + ++L T SM +A + R G + G L
Sbjct: 173 DEPTSALDPISAGKIEETLLGL---KDDYTMLLVTRSMQQASRISDRTGFFLDGDL 225
|
Length = 252 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 9e-13
Identities = 71/257 (27%), Positives = 113/257 (43%), Gaps = 48/257 (18%)
Query: 1472 KVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTL-------SMISGEEYPTD 1524
V+ G K+ A+ + + F+G +G GK+T L I G
Sbjct: 26 SVFYGEKQ-----ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCR--VT 78
Query: 1525 GTAFIFGKDI---RSDPKAARRLIGYCPQ----FDALLEYLTVQEHLELYARIKGVA--E 1575
G + G+DI R D R +G Q F ++ E++ RI G+A +
Sbjct: 79 GKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-----SIYENVAYGPRIHGLARSK 133
Query: 1576 YRMDDVVMEKLVEFDLLKHAK----KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTG 1631
+D++V L + L + K +P LSGG +++L +A A+ P ++++DEP +
Sbjct: 134 AELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSA 193
Query: 1632 MDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG------ 1685
+DPIA + E+I L RQ T VI+ THSM +A + R G L +G
Sbjct: 194 LDPIATAKVEELIDEL--RQNYTIVIV-THSMQQAARVSQRTAFFHLGNLVEVGDTEKMF 250
Query: 1686 -SPQHLKT------RFG 1695
+P +T RFG
Sbjct: 251 TNPDDPRTQDYITGRFG 267
|
Length = 267 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 9e-13
Identities = 58/216 (26%), Positives = 105/216 (48%), Gaps = 12/216 (5%)
Query: 582 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGLGV 640
L TL+ +++AL+G +G+GKST ++L L PT G L+ G + D + + + +
Sbjct: 500 LTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVAL 559
Query: 641 CPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDE--VGLADKVNIVV----RA 694
Q +LF +VRE++ + + EE++ + A + + + + V
Sbjct: 560 VGQEPVLFSG-SVRENI-AYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQ 617
Query: 695 LSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMD 754
LSGG K+++++ AL+ +V+ILDE TS +D +L + + R +LL H +
Sbjct: 618 LSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRS--RASRTVLLIAHRLS 675
Query: 755 EAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTL 790
E D+I ++ GS+ G+ L G L
Sbjct: 676 TVER-ADQILVLKKGSVVEMGTHKQLMEDQGCYKHL 710
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 1e-12
Identities = 56/206 (27%), Positives = 100/206 (48%), Gaps = 39/206 (18%)
Query: 1484 VAVHSLTFSVQAGECFGFLGTNGAGKTTTL-------SMISGEEYPTDGTAFIFGKDI-- 1534
+AV ++ + + F+G +G GK+T L +I G + +G GK++
Sbjct: 24 LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPG--FRVEGKVTFHGKNLYA 81
Query: 1535 -RSDPKAARRLIGYCPQ----FDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEF 1589
DP RR IG Q F ++ +++ ARI G Y+ D M++LVE
Sbjct: 82 PDVDPVEVRRRIGMVFQKPNPFPK-----SIYDNIAYGARING---YKGD---MDELVER 130
Query: 1590 DLLKHA---------KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1640
L + A K+ +LSGG +++L +A A+ P ++++DEP + +DPI+ +
Sbjct: 131 SLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRI 190
Query: 1641 WEVISRLSTRQGKTAVILTTHSMNEA 1666
E++ L + +I+ TH+M +A
Sbjct: 191 EELMHELKEQY---TIIIVTHNMQQA 213
|
Length = 264 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 1e-12
Identities = 57/215 (26%), Positives = 108/215 (50%), Gaps = 28/215 (13%)
Query: 1486 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDI--RSDPKAARR 1543
V+ ++F+++ GE G G GAG+T + ++ G T G + G ++ RS
Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327
Query: 1544 LIGYCPQ---FDALLEYLTVQEHLELYA---------RIKGVAEYRMDDVVMEKLVEFDL 1591
I Y + D L+ ++V+E++ L A +K E + + +F
Sbjct: 328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADE-------QQAVSDFIR 380
Query: 1592 LKHAKKPSF-----TLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISR 1646
L + K PS LSGGN++K+++A ++ P ++ILDEP+ G+D AK+ ++++I++
Sbjct: 381 LFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQ 440
Query: 1647 LSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
+ ++IL + M E + RI +M G++
Sbjct: 441 F--KAEGLSIILVSSEMPEVLGMSDRILVMHEGRI 473
|
Length = 501 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.1 bits (171), Expect = 1e-12
Identities = 54/192 (28%), Positives = 93/192 (48%), Gaps = 11/192 (5%)
Query: 591 ILALLGHNGAGKSTTISMLVGLIPPTTG-----DALVFGKNI--TADMDEIRKGLGVCPQ 643
+ +L+G G+GK+T + L + +G D L+ G++I D+ E R+ +G+ Q
Sbjct: 49 VTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQ 108
Query: 644 YDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVR----ALSGGM 699
FP + L K V + V + EVGL D V + LSGG
Sbjct: 109 RPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQ 168
Query: 700 KRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEEL 759
++ L L L + +V++LDEPTS +DP + + I+ + +++ TH++ +A +
Sbjct: 169 QQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARI 228
Query: 760 GDRIAIMANGSL 771
DR A+ +G L
Sbjct: 229 SDRAALFFDGRL 240
|
Length = 276 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 66.3 bits (163), Expect = 2e-12
Identities = 41/185 (22%), Positives = 70/185 (37%), Gaps = 66/185 (35%)
Query: 1489 LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYC 1548
++ ++ G+ G +G NGAGK+T L +I+GE P +G +G ++ IGY
Sbjct: 19 ISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGI-VTWGSTVK---------IGYF 68
Query: 1549 PQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKR 1608
Q LSGG K
Sbjct: 69 EQ---------------------------------------------------LSGGEKM 77
Query: 1609 KLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQA 1668
+L++A ++ +P +++LDEP+ +D + + L G VIL +H
Sbjct: 78 RLALAKLLLENPNLLLLDEPTNHLDLESIEA---LEEALKEYPG--TVILVSHDRYFLDQ 132
Query: 1669 LCTRI 1673
+ T+I
Sbjct: 133 VATKI 137
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (169), Expect = 2e-12
Identities = 59/204 (28%), Positives = 105/204 (51%), Gaps = 16/204 (7%)
Query: 574 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTI---SMLVGLIP--PTTGDALVFGKNI- 627
G A+ + L + +I+A +G +G GKST + + + LIP G L +NI
Sbjct: 31 GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIY 90
Query: 628 --TADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK---EELLESVV--AEMVD 680
+ ++R+ +G+ Q FP+ ++ E++ G K +EL+E + A + +
Sbjct: 91 DSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYKGNLDELVEDSLRRAAIWE 149
Query: 681 EVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI 740
EV DK+ ALSGG +++L + A+ V+++DEP S +DP S R +L ++
Sbjct: 150 EV--KDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLEL 207
Query: 741 KKGRIILLTTHSMDEAEELGDRIA 764
K+ I++ TH+M +A + D A
Sbjct: 208 KEQYTIIMVTHNMQQASRVADWTA 231
|
Length = 274 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 3e-12
Identities = 61/245 (24%), Positives = 102/245 (41%), Gaps = 57/245 (23%)
Query: 1475 PGGKRSDAK----VAVHSLT--------FSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1522
PG +R A + V LT V+AGE G G GAG+T + G
Sbjct: 256 PGNRRQQAAGAPVLTVEDLTGEGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPA 315
Query: 1523 TDGTAFIFGKDIRSDPKAARRLIG--YCPQ--------FDALLEY----LTVQEH----- 1563
G + GK+I + A R G Y P+ DA L + LT
Sbjct: 316 RGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIK 375
Query: 1564 -------LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAM 1616
LE Y R + HA++ + TLSGGN++K+ +A +
Sbjct: 376 PARENAVLERYRRALNIK-----------------FNHAEQAARTLSGGNQQKVLIAKCL 418
Query: 1617 IGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIM 1676
P ++I+DEP+ G+D A+ ++++I ++ + AV+ + + E + + R+ +M
Sbjct: 419 EASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQN--VAVLFISSDLEEIEQMADRVLVM 476
Query: 1677 VGGQL 1681
G++
Sbjct: 477 HQGEI 481
|
Length = 510 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 3e-12
Identities = 52/227 (22%), Positives = 95/227 (41%), Gaps = 26/227 (11%)
Query: 1478 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG-EEY-PTDGTAFIFGKDIR 1535
+ K + + +V+ GE +G NG+GK+T I G +Y T+G G+DI
Sbjct: 12 EVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDIL 71
Query: 1536 SDPKA--ARRLIGYCPQFDALLEYLTVQEHLEL-YARIKGVAEYRMDDV--VMEKLVEFD 1590
AR I Q+ + +T + L +G + + + EK
Sbjct: 72 ELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLG 131
Query: 1591 LLKHAKKPSF-------TLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEV 1643
L F SGG K++ + ++ +P + ILDEP +G+D A + + E
Sbjct: 132 L-----DEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEG 186
Query: 1644 ISRLSTRQGKTAVILTTHS---MNEAQALCTRIGIMVGGQLRCIGSP 1687
I+ L R+ V++ TH ++ + ++ ++ G++ G P
Sbjct: 187 INAL--REEGRGVLIITHYQRLLDYIKP--DKVHVLYDGRIVKSGDP 229
|
Length = 251 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 3e-12
Identities = 55/203 (27%), Positives = 101/203 (49%), Gaps = 13/203 (6%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 637
+ + L + L ++G +G+GKST +LVG+ PPT+G + G ++ D +++ +
Sbjct: 352 LKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRH 411
Query: 638 LGVCPQYDI-LFPELTVREHLEMFAVLKGVKEELLESVVAEMVDE--VGLADKVNIVV-- 692
+G PQ D+ LF T+ E++ F + E+++E+ V E + L + +
Sbjct: 412 IGYLPQ-DVELFDG-TIAENIARFGE-EADPEKVIEAARLAGVHELILRLPQGYDTRIGE 468
Query: 693 --RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK-GRIILLT 749
LSGG +++++L AL GD +V+LDEP S +D I K G +++
Sbjct: 469 GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVI 528
Query: 750 THSMDEAEELGDRIAIMANGSLK 772
H A D+I ++ +G +
Sbjct: 529 AHRP-SALASVDKILVLQDGRIA 550
|
Length = 580 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 3e-12
Identities = 61/235 (25%), Positives = 111/235 (47%), Gaps = 20/235 (8%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
I + YP R D A+ L +V+ GE +G +GAGK+T ++ P
Sbjct: 338 IEFEQVNFAYPA--RPDQP-ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQS 394
Query: 1525 GTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYAR-------IKGVAEY 1576
G + G D+R DP R + PQ D +L +V E++ Y R ++ A
Sbjct: 395 GRILLDGVDLRQLDPAELRARMALVPQ-DPVLFAASVMENIR-YGRPDATDEEVEAAARA 452
Query: 1577 RMDDVVMEKLVE-FDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPI 1635
+ L E +D + + TLSGG ++++++A A++ D PI++LDE ++ +D
Sbjct: 453 AHAHEFISALPEGYD--TYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAE 510
Query: 1636 AKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
+++ + + + L +G+T +I+ H + RI +M G++ G+ L
Sbjct: 511 SEQLVQQALETLM--KGRTTLII-AHRLATVLK-ADRIVVMDQGRIVAQGTHAEL 561
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 3e-12
Identities = 66/250 (26%), Positives = 106/250 (42%), Gaps = 57/250 (22%)
Query: 563 RKLHKVY---ATKRGNCC---------AVNSLQLTLYENQILALLGHNGAGKSTTISMLV 610
RKL Y G VN + TL + +IL + G GAG++ + +L
Sbjct: 240 RKLEDQYPRLDKAPGEVRLKVDNLSGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLY 299
Query: 611 GLIPPTTGDALVFGKNITAD------------MDEIRKGLGVCPQYDILFPELTVREHLE 658
G +P T+G + G + + E RK D L ++V+E++
Sbjct: 300 GALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKR-------DGLVLGMSVKENMS 352
Query: 659 MFAV---------LKGVKEELLESVVAEMVDEVGLADKVNI-------VVRALSGGMKRK 702
+ A+ LK E + D + L NI + LSGG ++K
Sbjct: 353 LTALRYFSRAGGSLKHADE------QQAVSDFIRL---FNIKTPSMEQAIGLLSGGNQQK 403
Query: 703 LSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK-GRIILLTTHSMDEAEELGD 761
+++ L+ KV+ILDEPT G+D + + +QLI + K G I+L + M E + D
Sbjct: 404 VAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSD 463
Query: 762 RIAIMANGSL 771
RI +M G +
Sbjct: 464 RILVMHEGRI 473
|
Length = 501 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 4e-12
Identities = 58/240 (24%), Positives = 106/240 (44%), Gaps = 25/240 (10%)
Query: 551 KQQEVDGRCI-QIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISML 609
K G + ++ L R AV + + +I+ + G G G+S + +
Sbjct: 248 KPPSTPGEVVLEVEDLS---VKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAI 304
Query: 610 VGLIPPTTGDALVFGKNIT--ADMDEIRK-GLGVCPQYDI---LFPELTVREHL------ 657
GL P +G L+ GK++ E R+ GL P+ L +L++ E+L
Sbjct: 305 SGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHD 364
Query: 658 -EMFAVLKGVKEELLESVVAEMVDEVGL-ADKVNIVVRALSGGMKRKLSLGIALIGDSKV 715
+ F+ + + E+++E + A + R+LSGG ++KL L L +
Sbjct: 365 KKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDL 424
Query: 716 VILDEPTSGMD----PYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 771
+I +PT G+D + +L++ G+ +LL + +DE EL DRIA++ G +
Sbjct: 425 LIAAQPTRGLDVGAIEFIHE---RLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRI 481
|
Length = 501 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 4e-12
Identities = 54/208 (25%), Positives = 103/208 (49%), Gaps = 14/208 (6%)
Query: 1485 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG-----EEYPTDGTAFIFGKDIRSDPK 1539
A+ S+ + A + +G +G GK+T L ++ E G + G+DI +
Sbjct: 18 ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID 77
Query: 1540 AARRLIGYCPQFDALLEY-LTVQEHLELYARIKGVAEYR-MDDVVMEKLVEFDLLKHAK- 1596
A I F + +++ E++ R +G+ + + +D+VV L L K
Sbjct: 78 VADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKD 137
Query: 1597 ---KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGK 1653
+F LSGG +++L +A + +P ++++DEP++ +DPIA + E++ L ++
Sbjct: 138 RLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEEL--KKNY 195
Query: 1654 TAVILTTHSMNEAQALCTRIGIMVGGQL 1681
T VI+ THSM +A+ + R + G+L
Sbjct: 196 TIVIV-THSMQQARRISDRTAFFLMGEL 222
|
Length = 249 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 4e-12
Identities = 59/230 (25%), Positives = 106/230 (46%), Gaps = 16/230 (6%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1523
+I + N+ K Y KV + ++ + G +G NGAGK+T LSM+S
Sbjct: 1 MITIENVSKSY------GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD 54
Query: 1524 DGTAFIFGKDIRSDPKA--ARRLIGYCPQFDALLEYLTVQEHLEL----YARIKGVAEYR 1577
G I G ++ S P A++L Q + + LTV++ + Y++ + E R
Sbjct: 55 SGEITIDGLELTSTPSKELAKKL-SILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDR 113
Query: 1578 MDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK 1637
++ E + L + + LSGG +++ +A+ + D V+LDEP +D
Sbjct: 114 --RIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHS 171
Query: 1638 RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1687
+ +++ RL+ GKT +++ H +N A I + G++ GSP
Sbjct: 172 VQIMKILRRLADELGKT-IVVVLHDINFASCYSDHIVALKNGKVVKQGSP 220
|
Length = 252 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 4e-12
Identities = 70/259 (27%), Positives = 120/259 (46%), Gaps = 37/259 (14%)
Query: 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1522
+ I ++NL K + G + +H + V+ GE +G +G+GKTT L I+ E P
Sbjct: 2 SAIEVKNLVKKFHG------QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP 55
Query: 1523 TDGTAFIFGKDIRSDP-----------KAARRLIGYCPQFDALLEYLTVQEH-LELYARI 1570
GT I DI D + R+ +G+ Q L + TV E+ +E +
Sbjct: 56 EAGT--IRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIV 113
Query: 1571 KGVAEYRMDDVVMEKLVEFDLLKHAKKPSFT--LSGGNKRKLSVAIAMIGDPPIVILDEP 1628
KG + E L + L K+ S+ LSGG ++++++A A+ P +++ DEP
Sbjct: 114 KGEPKEEATARARELLAKVGL--AGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEP 171
Query: 1629 STGMDPIAKRFMWEVISRL-STRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL------ 1681
++ +DP + EV++ + Q K +++ TH M+ A+ + R M G++
Sbjct: 172 TSALDP---ELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPA 228
Query: 1682 -RCIGSPQHLKTRFGNFLE 1699
PQ +TR FLE
Sbjct: 229 KALFADPQQPRTR--QFLE 245
|
Length = 250 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 4e-12
Identities = 59/219 (26%), Positives = 110/219 (50%), Gaps = 19/219 (8%)
Query: 1485 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMIS--GEEYP---TDGTAFIFGKDIRS--- 1536
AV + +++ F+G +G GK+T L ++ E P +G + G+D+
Sbjct: 19 AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV 78
Query: 1537 DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGV-AEYRMDDVVMEKLVEFDLLKHA 1595
DP A RR IG Q +++++++ ++ GV + +D++V + L +L
Sbjct: 79 DPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV 138
Query: 1596 K----KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQ 1651
K KP LSGG +++L +A A+ +P ++++DEP + +DPI+ + ++I+ L +Q
Sbjct: 139 KDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL--KQ 196
Query: 1652 GKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
T VI+ TH+M +A + + L G P L
Sbjct: 197 DYTIVIV-THNMQQAARVSDQTAFF---NLEATGKPGRL 231
|
Length = 258 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (167), Expect = 4e-12
Identities = 61/228 (26%), Positives = 110/228 (48%), Gaps = 23/228 (10%)
Query: 555 VDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP 614
+ + KL K++ GN AV + + +N+I +G +G GKST + L +
Sbjct: 3 SEAPIVMDCKLDKIF---YGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMND 59
Query: 615 PTTGDAL----------VFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLK 664
G V+GK + D +R+ +G+ Q F +++ +++ L
Sbjct: 60 LVKGFRFEGHVHFLGQDVYGKGV--DPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLN 116
Query: 665 GVKEELLESVV-----AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 719
K +L + V A + DEV DK+ + +LSGG +++L + A+ + +V++LD
Sbjct: 117 RYKGDLGDRVKHALQGAALWDEV--KDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLD 174
Query: 720 EPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMA 767
EP S +DP + R +L+ ++KK I L TH+M +A + D A +
Sbjct: 175 EPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFS 222
|
Length = 261 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 5e-12
Identities = 51/186 (27%), Positives = 92/186 (49%), Gaps = 12/186 (6%)
Query: 1489 LTFSVQAGECFGFLGTNGAGKTTTLSMISGE---EYPTDGTAFIFGKDIRSDPKAARRLI 1545
+ F++ GE +G +G GK+T LS + G ++ G ++ + + P AA+R I
Sbjct: 21 VNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP-AAQRQI 79
Query: 1546 GYCPQFDALLEYLTVQEHL--ELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLS 1603
G Q L +L+V ++L L A +KG A + +E+ D H + P+ TLS
Sbjct: 80 GILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALER-SGLDGAFH-QDPA-TLS 136
Query: 1604 GGNKRKLSVAIAMIGDPPIVILDEPSTGMD-PIAKRFMWEVISRLSTRQGKTAVILTTHS 1662
GG + ++++ A++ P ++LDEP + +D + +F V S + R + TH
Sbjct: 137 GGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEV--RAAGIPTVQVTHD 194
Query: 1663 MNEAQA 1668
+ + A
Sbjct: 195 LQDVPA 200
|
Length = 213 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 5e-12
Identities = 55/204 (26%), Positives = 104/204 (50%), Gaps = 19/204 (9%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT----ADMDE 633
AV+ + L LYE + L ++G +G GKST ++GL+ T G+ GK++ +
Sbjct: 36 AVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRA 95
Query: 634 IRKGLGVCPQYDI--LFPELTV----REHLEMFAVLKGVKEELLESVVAEMVDEVGLADK 687
+R + + Q + L P +T+ E L + K ++E+ + V A M+ +VGL
Sbjct: 96 VRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKA-MMLKVGLLP- 152
Query: 688 VNIVVR---ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK-- 742
N++ R SGG +++ + ALI + K++I DEP S +D L++++++
Sbjct: 153 -NLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREM 211
Query: 743 GRIILLTTHSMDEAEELGDRIAIM 766
G ++ H + + + DR+ +M
Sbjct: 212 GLSLIFIAHDLAVVKHISDRVLVM 235
|
Length = 331 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 5e-12
Identities = 57/204 (27%), Positives = 107/204 (52%), Gaps = 16/204 (7%)
Query: 574 GNCCAVNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIPPTT--GDALVFGKNIT 628
G AV ++ + ++ AL+G +G GKST +++ + LI + G L G ++
Sbjct: 24 GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLY 83
Query: 629 A---DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK---EELLESVV--AEMVD 680
D E+R+ +G+ Q FP+ ++ E++ A + G +EL+E + A + D
Sbjct: 84 DPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYTGDMDELVERSLRKAAVWD 142
Query: 681 EVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI 740
E DK+N +LSGG +++L + + + +V+++DEP S +DP S + + ++
Sbjct: 143 EC--KDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHEL 200
Query: 741 KKGRIILLTTHSMDEAEELGDRIA 764
KK I++ TH+M +A + D A
Sbjct: 201 KKNFTIVIVTHNMQQAVRVSDMTA 224
|
Length = 269 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 6e-12
Identities = 56/244 (22%), Positives = 98/244 (40%), Gaps = 49/244 (20%)
Query: 1462 NAIIYLRNLRKVYPGGKRSDAKVAV-HSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE 1520
+ + N+ K + ++ ++ V +++ SV AGEC G +G+GK+T L +
Sbjct: 2 PTPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANY 61
Query: 1521 YPTDGTAFIFGKDIRSDPKAA---------RRLIGYCPQFDALLEYLTVQEHLELYARIK 1571
P +G + + D A R IGY QF L + R+
Sbjct: 62 LPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQF------------LRVIPRVS 109
Query: 1572 GVAEYRMDDVVMEKLVEF------------DLLKHAKKPS-------FTLSGGNKRKLSV 1612
+ DVV E L+ DLL P T SGG ++++++
Sbjct: 110 AL------DVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNI 163
Query: 1613 AIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTR 1672
A I D PI++LDEP+ +D + + E+I + A++ H +A+ R
Sbjct: 164 ARGFIVDYPILLLDEPTASLDATNRAVVVELIR--EAKARGAALVGIFHDEEVREAVADR 221
Query: 1673 IGIM 1676
+ +
Sbjct: 222 LLDV 225
|
Length = 235 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 6e-12
Identities = 59/201 (29%), Positives = 101/201 (50%), Gaps = 21/201 (10%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD-MDEIRKG 637
V + LT+ +++ L+G NG+GKST +L GL P +G+ L+ GK ++A+ +++ RK
Sbjct: 339 VGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRK- 397
Query: 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKV-----NIVV 692
LF + HL F L G + + ++ + + + LA K
Sbjct: 398 ---------LFSAVFSDYHL--FDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSN 446
Query: 693 RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ-LIKKIKK-GRIILLTT 750
LS G K++L+L +AL+ + +++LDE + DP R +Q L+ +K+ G+ I +
Sbjct: 447 LKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAIS 506
Query: 751 HSMDEAEELGDRIAIMANGSL 771
H D DR+ M NG L
Sbjct: 507 HD-DHYFIHADRLLEMRNGQL 526
|
Length = 546 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 7e-12
Identities = 45/193 (23%), Positives = 87/193 (45%), Gaps = 14/193 (7%)
Query: 593 ALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIR-KGLGVCPQYDILFPEL 651
LLG NG+GKST + +L G + P G + G ++ R + + + Q L
Sbjct: 31 GLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPL 90
Query: 652 TVRE--------HLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKL 703
TVR+ H ++A VV + L+ + + LSGG ++++
Sbjct: 91 TVRDVVALGRIPHRSLWAGDSPHDAA----VVDRALARTELSHLADRDMSTLSGGERQRV 146
Query: 704 SLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRI-ILLTTHSMDEAEELGDR 762
+ AL + K+++LDEPT+ +D + T L++++ + ++ H ++ A D
Sbjct: 147 HVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDH 206
Query: 763 IAIMANGSLKCCG 775
+ ++ G + G
Sbjct: 207 VVVLDGGRVVAAG 219
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 7e-12
Identities = 70/271 (25%), Positives = 119/271 (43%), Gaps = 24/271 (8%)
Query: 551 KQQEVDGR-CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISML 609
E+D R + + L+ + ++ AV +L +L + LA++G +G+GKS T L
Sbjct: 3 HSDELDARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALAL 62
Query: 610 VGLIPPTTGDA--------------LVFGKNITADMDEIRKG-LGVCPQYDI--LFPELT 652
+ L+ G + + A M +R + + Q + L P T
Sbjct: 63 MRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFT 122
Query: 653 VREHL-EMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVR---ALSGGMKRKLSLGIA 708
V E + E + +G E M+D+V + + I+ R LSGGM++++ + +A
Sbjct: 123 VGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMA 182
Query: 709 LIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIM 766
L V+I DEPT+ +D QLIK ++K ++ TH M E+ DR+ +M
Sbjct: 183 LSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVM 242
Query: 767 ANGSLKCCGSSLFLKHQYGVGYTLTLVKSAP 797
G GS + H YT L+ + P
Sbjct: 243 YQGEAVETGSVEQIFHAPQHPYTRALLAAVP 273
|
Length = 623 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 7e-12
Identities = 59/219 (26%), Positives = 111/219 (50%), Gaps = 30/219 (13%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGL---IPPTTGDALVF--GKNI---TA 629
A+ + + + E + AL+G +G GKST + L + I D V G++I
Sbjct: 60 ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV 119
Query: 630 DMDEIRKGLGVCPQYDILFPELTVREHLE------------MFAVLKG-----VKEELLE 672
++ E+RK +G+ Q FP+ ++RE++ + A L G ++EL+E
Sbjct: 120 NLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVE 178
Query: 673 SVV--AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSM 730
+ A + DEV D+++ LSGG +++L + L D +V+++DEP S +DP +
Sbjct: 179 RSLRQAALWDEV--NDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIAT 236
Query: 731 RLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANG 769
LI+++ + +++ TH+M +A + D+ A+ G
Sbjct: 237 SKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTG 275
|
Length = 305 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 8e-12
Identities = 69/285 (24%), Positives = 129/285 (45%), Gaps = 32/285 (11%)
Query: 1459 SVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG 1518
DN + + +++ YP K+ A++ ++FS+ G +G NG+GK+T +I+G
Sbjct: 1 MKDNIVEF-KHVSFTYPDSKKP----ALNDISFSIPRGSWTALIGHNGSGKSTISKLING 55
Query: 1519 EEYPTD---GTAFIFGKDIRSDPK-AARRLIGYCPQF-DALLEYLTVQEHLELYARIKGV 1573
P D + G + + R +G Q D TV + + + V
Sbjct: 56 LLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAV 115
Query: 1574 AEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMD 1633
M +V + L + +L + LSGG K+++++A + +P I+ILDE ++ +D
Sbjct: 116 PRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLD 175
Query: 1634 PIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH---- 1689
P K + ++I +L + T VI TH ++EA + ++ ++ G+L GSP
Sbjct: 176 PAGKEQILKLIRKLKKKNNLT-VISITHDIDEA-NMADQVLVLDDGKLLAQGSPVEIFSK 233
Query: 1690 --------LKTRFGNFLELEVKPTEVS---SVDLED-----LCQI 1718
L F L+ ++K +S ++ E+ LCQ+
Sbjct: 234 VEMLKEIGLDIPFVYKLKNKLKEKGISVPQEINTEEKLVQYLCQL 278
|
Length = 282 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 8e-12
Identities = 61/243 (25%), Positives = 116/243 (47%), Gaps = 30/243 (12%)
Query: 550 MKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISML 609
Q+ + ++ L ++T G+ AVN L +L + L ++G +G+GKS T L
Sbjct: 3 PLAQQQADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFAL 62
Query: 610 VGLIPP---TTGDALVFGKNI----TADMDEIRKGLGVCPQYDILF--------PELTVR 654
+GL+ G A G+ I +++++R Q ++F P + V
Sbjct: 63 MGLLAANGRIGGSATFNGREILNLPEKELNKLR-----AEQISMIFQDPMTSLNPYMRVG 117
Query: 655 EHL-EMFAVLKGV--KEELLESVVAEMVDEVGLAD---KVNIVVRALSGGMKRKLSLGIA 708
E L E+ + KG+ E ESV M+D V + + ++ + SGGM++++ + +A
Sbjct: 118 EQLMEVLMLHKGMSKAEAFEESV--RMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMA 175
Query: 709 LIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIM 766
L+ K++I DEPT+ +D L+ ++K+ I++ TH + + D++ +M
Sbjct: 176 LLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVM 235
Query: 767 ANG 769
G
Sbjct: 236 YAG 238
|
Length = 330 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 8e-12
Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 10/163 (6%)
Query: 593 ALL--GHNGAGKSTTISMLVGLIPPTTGDALVFGK-NITADMDEIRKGLGVCPQYDILFP 649
ALL G NGAGK+T + +L GL+ +G + GK D LG P L
Sbjct: 39 ALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPG---LKA 95
Query: 650 ELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIAL 709
+L+ E+L L G + + + +V GLA + +VR LS G K++L+L
Sbjct: 96 DLSTLENLHFLCGLHGRRAKQMPGSALAIV---GLAGYEDTLVRQLSAGQKKRLALARLW 152
Query: 710 IGDSKVVILDEPTSGMDPYSMRLTWQLIK-KIKKGRIILLTTH 751
+ + + +LDEP + +D + L ++I ++ G L+TTH
Sbjct: 153 LSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 9e-12
Identities = 62/234 (26%), Positives = 111/234 (47%), Gaps = 29/234 (12%)
Query: 1485 AVHSLTFSVQAGECFGFLGTNGAGKTT---TLSMISGEEYPT--DGTAFIFGKDI---RS 1536
A+ ++ + + +G +G GK+T TL+ IS E P +G FG++I R
Sbjct: 22 AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRI 81
Query: 1537 DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKG-VAEYRMDDVVMEKLVEFDLLKHA 1595
+ RR IG Q +++ E++ RI + + +D++V L L +
Sbjct: 82 NINRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEV 140
Query: 1596 K----KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQ 1651
K K + LSGG +++L +A A+ P ++++DEP + +DPIA + E+I L +
Sbjct: 141 KDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSL---R 197
Query: 1652 GKTAVILTTHSMNEAQALC----------TRIGIMV--GGQLRCIGSPQHLKTR 1693
+ + + TH+M +A + +RIG MV G + +P +TR
Sbjct: 198 SELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIFSNPLDSRTR 251
|
Length = 259 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 1e-11
Identities = 58/222 (26%), Positives = 101/222 (45%), Gaps = 17/222 (7%)
Query: 1467 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1526
+ K +PG K A+ ++F +AG+ +G NGAGK+T L ++SG P G+
Sbjct: 7 FDGIGKTFPGVK------ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGS 60
Query: 1527 AFIFGKDIR----SDPKAARRLIGYCPQFDALLEYLTVQEHL---ELYARIKGVAEYRMD 1579
I G+++R + AA I Y Q L+ +TV E+L +L + V ++
Sbjct: 61 ILIDGQEMRFASTTAALAAGVAIIY--QELHLVPEMTVAENLYLGQLPHKGGIVNRRLLN 118
Query: 1580 DVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF 1639
E+L + P LS G ++ + +A A+ + ++ DEP++ +
Sbjct: 119 YEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQ 178
Query: 1640 MWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
++ VI L R ++ +H M E ALC I + G+
Sbjct: 179 LFRVIREL--RAEGRVILYVSHRMEEIFALCDAITVFKDGRY 218
|
Length = 501 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 1e-11
Identities = 58/227 (25%), Positives = 113/227 (49%), Gaps = 29/227 (12%)
Query: 1489 LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARRLIGY 1547
++F++ AG+ +G +G+GK+T L ++ + G+ I G+DIR + RR IG
Sbjct: 20 VSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79
Query: 1548 CPQFDALLEYLTVQEHLELYAR--------IKGVAEYRMDDVVMEKLVEFDL------LK 1593
PQ D +L T+ ++ Y R I+ ++ D +M +D LK
Sbjct: 80 VPQ-DTVLFNDTIGYNIR-YGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLK 137
Query: 1594 HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGK 1653
LSGG K+++++A A++ +PPI++LDE ++ +D +R + + +S G+
Sbjct: 138 --------LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK--GR 187
Query: 1654 TAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1700
T I+ H ++ +I ++ G++ G+ + L + G + E+
Sbjct: 188 T-TIVIAHRLSTI-VNADKIIVLKDGRIVERGTHEELLAKGGLYAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 1e-11
Identities = 47/200 (23%), Positives = 100/200 (50%), Gaps = 11/200 (5%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD------- 630
+ ++ LT+ + +AL G +GAGKST + L P +G LV + D
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 631 -MDEIRK-GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKV 688
+ E+R+ +G Q+ + P ++ E + + +GV E + E++ + + +++
Sbjct: 83 EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERL 142
Query: 689 NIVVRA-LSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRII 746
+ A SGG ++++++ I D +++LDEPT+ +D + ++ +LI + K +G +
Sbjct: 143 WHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAAL 202
Query: 747 LLTTHSMDEAEELGDRIAIM 766
+ H + E + DR+ +
Sbjct: 203 IGIFHDEEVRELVADRVMDV 222
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 1e-11
Identities = 66/284 (23%), Positives = 130/284 (45%), Gaps = 44/284 (15%)
Query: 1415 TRHRLCNTPSSYLEPLLQSSSESDTLDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVY 1474
T + + + SS + L+ +++ +DT D + D +I R+L V+
Sbjct: 2 TNNEMTSDESS--DGLITTTTATDTTDPSGDPAASSGE----------TVIEARDL-NVF 48
Query: 1475 PGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG-----EEYPTDGTAFI 1529
G ++ A+ ++ + + +G +G GK+T L I+ + +G
Sbjct: 49 YGDEQ-----ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTF 103
Query: 1530 FGKDIRS---DPKAARRLIGYCPQ----FDALLEYLTVQEHLELYARIKGVAEYRMDDVV 1582
GK++ DP A RR IG Q F ++ +++ +I+G +D+ V
Sbjct: 104 RGKNVYDADVDPVALRRRIGMVFQKPNPFPK-----SIYDNVAYGLKIQGYDG-DIDERV 157
Query: 1583 MEKLVEFDLLKHAK----KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKR 1638
E L L K LSGG +++L +A A+ DP ++++DEP++ +DP+A
Sbjct: 158 EESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATS 217
Query: 1639 FMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGI-MVGGQL 1681
+ ++I L+ + V++ TH+M +A + + + + GG+L
Sbjct: 218 KIEDLIEELAE---EYTVVIVTHNMQQAARISDKTAVFLTGGEL 258
|
Length = 285 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 1e-11
Identities = 62/255 (24%), Positives = 115/255 (45%), Gaps = 39/255 (15%)
Query: 1468 RNLRKVYPGGK-----RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1522
+LR +P D AV ++ +++ G+ G +G +G+GK+T + P
Sbjct: 280 EDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL-IP 338
Query: 1523 TDGTAFIFGKDI----RSDPKAARRLIGYCPQ--FDALLEYLTVQEHLELYARI--KGVA 1574
+ G G+DI R + + RR + Q + +L +TV + +E R+ ++
Sbjct: 339 SQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLS 398
Query: 1575 EYRMDDVVMEKLVEFDLLKHAKKPSFTL-------SGGNKRKLSVAIAMIGDPPIVILDE 1627
D V+E L E L T SGG ++++++A A+I P +++LDE
Sbjct: 399 AAERDQRVIEALEEVGL------DPATRNRYPHEFSGGQRQRIAIARALILKPELILLDE 452
Query: 1628 PSTGMDPIAKRFMWEVISRLSTRQGK--TAVILTTHSMNEAQALCTRIGIMVGGQL---- 1681
P++ +D + +V+ L Q K + + +H + +ALC R+ +M G++
Sbjct: 453 PTSALD---RSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQG 509
Query: 1682 ---RCIGSPQHLKTR 1693
+PQH TR
Sbjct: 510 PTEAVFANPQHEYTR 524
|
Length = 534 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 1e-11
Identities = 67/230 (29%), Positives = 108/230 (46%), Gaps = 21/230 (9%)
Query: 560 IQIRKLHKVYAT-----KRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP 614
+ + L YA K + +N++ L+L + +ALLG +G GKST +LVGL
Sbjct: 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES 63
Query: 615 PTTGDALVFGKNIT----ADMDEIRKGLGVCPQYDI--LFPELTVREHL-EMFAVLKGVK 667
P+ G+ G+ + A R+ + + Q I + P TVRE + E L +
Sbjct: 64 PSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLD 123
Query: 668 EELLESVVAEMVDEVGLADKV-NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 726
+ + +EM+ V L D V + LSGG +++ L AL + K++ILDE S +D
Sbjct: 124 KAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
Query: 727 PYSMRLTWQLIKKIKK-----GRIILLTTHSMDEAEELGDRIAIMANGSL 771
+ L +I+ +KK G L TH + E R+ +M NG +
Sbjct: 184 ---LVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQI 230
|
Length = 268 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 1e-11
Identities = 58/215 (26%), Positives = 109/215 (50%), Gaps = 14/215 (6%)
Query: 1462 NAIIYLRNLRKVYPGGKRSDAKVAV-HSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE 1520
A++ L+++R+ YP G + +V V ++ + AGE +G +G+GK+T ++++ +
Sbjct: 2 TALLELKDIRRSYPSG---EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLD 58
Query: 1521 YPTDGTAFIFGKDI---RSDPKAA--RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAE 1575
PT GT + G+D+ +D A R G+ Q LL +LT +++E+ A G+
Sbjct: 59 KPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLER 118
Query: 1576 YRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPI 1635
+ E L L + LSGG ++++S+A A++ +++ DEP+ +D
Sbjct: 119 KQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSH 178
Query: 1636 AKRFMWEVISRLST--RQGKTAVILTTHSMNEAQA 1668
+ EV++ L +G T +I+T AQA
Sbjct: 179 SGE---EVMAILHQLRDRGHTVIIVTHDPQVAAQA 210
|
Length = 648 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 1e-11
Identities = 50/207 (24%), Positives = 101/207 (48%), Gaps = 22/207 (10%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTT--GDALVFGKNITAD--MDE 633
A++++ L + +I++L G NGAGKST + +L G+ P T G+ + G+ + A D
Sbjct: 20 ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDT 79
Query: 634 IRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVV----------AEMVDEVG 683
R G+ + Q L EL+V E+ +F + E+ + +++ ++
Sbjct: 80 ERAGIAIIHQELALVKELSVLEN--IF-----LGNEITPGGIMDYDAMYLRAQKLLAQLK 132
Query: 684 LADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-K 742
L V L G ++ + + AL ++++ILDEPT+ + + +I+ +K
Sbjct: 133 LDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAH 192
Query: 743 GRIILLTTHSMDEAEELGDRIAIMANG 769
G + +H ++E + + D I ++ +G
Sbjct: 193 GIACIYISHKLNEVKAISDTICVIRDG 219
|
Length = 506 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 1e-11
Identities = 55/203 (27%), Positives = 83/203 (40%), Gaps = 20/203 (9%)
Query: 1484 VAVHSLTFS-------------VQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIF 1530
+A H+L FS V AGE G NGAGKTT L +++G + G I
Sbjct: 12 LAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQID 71
Query: 1531 GKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFD 1590
GK ++ R + Y L L+ E+L + G +M L
Sbjct: 72 GKTATRGDRS--RFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPG---SALAIVG 126
Query: 1591 LLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTR 1650
L + LS G K++L++A + P+ +LDEP +D + +IS
Sbjct: 127 LAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRG 186
Query: 1651 QGKTAVILTTHSMNEAQALCTRI 1673
G A ++TTH A + TR+
Sbjct: 187 GG--AALVTTHGAYAAPPVRTRM 207
|
Length = 214 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 1e-11
Identities = 53/198 (26%), Positives = 101/198 (51%), Gaps = 6/198 (3%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGK--NITADMDEIR 635
A++++ L + + I AL+G NGAGKST + L G+ +G L GK + + + +
Sbjct: 13 ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALE 72
Query: 636 KGLGVCPQYDILFPELTVREHLEMFAV-LKG--VKEELLESVVAEMVDEVGLADKVNIVV 692
G+ + Q L + +V +++ + KG V ++ + + DE+ + V
Sbjct: 73 NGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV 132
Query: 693 RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTH 751
LS + + + A ++K+VI+DEPTS + + + +I+K+K +G I+ +H
Sbjct: 133 ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISH 192
Query: 752 SMDEAEELGDRIAIMANG 769
M+E +L D I I+ +G
Sbjct: 193 KMEEIFQLCDEITILRDG 210
|
Length = 491 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (162), Expect = 1e-11
Identities = 54/204 (26%), Positives = 94/204 (46%), Gaps = 8/204 (3%)
Query: 1488 SLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPK---AARRL 1544
+L FS+ G +G NG GK+T +SG P G GK + + A R+
Sbjct: 21 NLDFSLSP--VTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78
Query: 1545 IGYCPQF-DALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLS 1603
+ Q + + Y + + R GV E + V E L D +P LS
Sbjct: 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLS 138
Query: 1604 GGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSM 1663
G K+++++A A++ ++LDEP+ G+DP + M +I R+ QG VI+++H +
Sbjct: 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRI-VAQGNH-VIISSHDI 196
Query: 1664 NEAQALCTRIGIMVGGQLRCIGSP 1687
+ + + ++ GQ+ G+P
Sbjct: 197 DLIYEISDAVYVLRQGQILTHGAP 220
|
Length = 271 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 2e-11
Identities = 60/229 (26%), Positives = 101/229 (44%), Gaps = 16/229 (6%)
Query: 1477 GKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTT------TLSMISGEEYPTDGTAFIF 1530
KR + L FSV AGE +G +G+GK+T TL I + +G
Sbjct: 7 TKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYH 66
Query: 1531 -----GKDIRSDPKAARRL---IGYCPQFDALLEYLTVQEHLELY-ARIKGVAEYRMDDV 1581
G + +D K R++ IG Q L + TV +++ + G+A +
Sbjct: 67 MPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKR 126
Query: 1582 VMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMW 1641
ME L L A LSGG ++++++A A+ P +++ DE ++ +DP +
Sbjct: 127 AMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVL 186
Query: 1642 EVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
VI RL++ T ++L TH M A+ R+ G++ G P +
Sbjct: 187 NVIRRLASEHDLT-MLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (161), Expect = 2e-11
Identities = 70/265 (26%), Positives = 124/265 (46%), Gaps = 46/265 (17%)
Query: 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMIS--GE 1519
I+ +++L +Y G KR AV+ ++ ++ +G +G GK+T L I+ +
Sbjct: 19 EHILEVKDL-SIYYGEKR-----AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMND 72
Query: 1520 EYP---TDGTAFIFGKDI---RSDPKAARRLIGYCPQ----FDALLEYLTVQEHLELYA- 1568
P ++G G +I + RR IG Q F + Y + L+ YA
Sbjct: 73 LIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSI-YNNITHALK-YAG 130
Query: 1569 -RIKGVAEYRMDDVVMEKLVEFDLLKHAK----KPSFTLSGGNKRKLSVAIAMIGDPPIV 1623
R K V +D++V E L + L K + +LSGG +++L +A + P ++
Sbjct: 131 ERRKSV----LDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVL 186
Query: 1624 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL-- 1681
+LDEP++ +DPI+ + E+I+ L + + ++I+ TH+M +A + R + G L
Sbjct: 187 LLDEPASALDPISNAKIEELITEL---KEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVE 243
Query: 1682 -----RCIGSPQHLKT------RFG 1695
+ SP+ KT RFG
Sbjct: 244 YDQTEQIFTSPKQQKTEDYINGRFG 268
|
Length = 268 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 2e-11
Identities = 51/195 (26%), Positives = 96/195 (49%), Gaps = 7/195 (3%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEI-RKG 637
+N++ +L + + G +G GKST + ++ LI PT+G L G++I+ EI R+
Sbjct: 23 LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ 82
Query: 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKV-NIVVRALS 696
+ C Q LF + TV ++L ++ + + ++ + ++ L D + + LS
Sbjct: 83 VSYCAQTPTLFGD-TVYDNLIFPWQIRNQQPD--PAIFLDDLERFALPDTILTKNIAELS 139
Query: 697 GGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI--KKGRIILLTTHSMD 754
GG K+++SL L KV++LDE TS +D + ++I + ++ +L TH D
Sbjct: 140 GGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD 199
Query: 755 EAEELGDRIAIMANG 769
E I + +
Sbjct: 200 EINHADKVITLQPHA 214
|
Length = 225 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 2e-11
Identities = 45/151 (29%), Positives = 75/151 (49%), Gaps = 7/151 (4%)
Query: 582 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGLGV 640
L LT ++ L+GHNG+GKST + ML PP+ G+ L+ + + + + +
Sbjct: 30 LSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAY 89
Query: 641 CPQYDILFPELTVREHLEM-----FAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRAL 695
PQ +TVRE + + L E V E + VGL + +V +L
Sbjct: 90 LPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREK-VEEAISLVGLKPLAHRLVDSL 148
Query: 696 SGGMKRKLSLGIALIGDSKVVILDEPTSGMD 726
SGG +++ + + + DS+ ++LDEPTS +D
Sbjct: 149 SGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179
|
Length = 265 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 2e-11
Identities = 47/195 (24%), Positives = 104/195 (53%), Gaps = 14/195 (7%)
Query: 1483 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTL---SMISGEEYPTDGTAFIFGKDIRS-DP 1538
K A+ + ++ + +G +G GK+T L + ++ + DG I GKD+++ D
Sbjct: 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDV 74
Query: 1539 KAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVM-----EKLVEFDLLK 1593
A R+ +G Q + ++ E++ ++ G+ + + ++ + +K+ F+ +K
Sbjct: 75 VALRKNVGMVFQQPNVF-VKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK 133
Query: 1594 HA-KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1652
K+ + LSGG +++L +A A+ P +++LDEP++ +DPI+ + E++ LS
Sbjct: 134 DKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH--- 190
Query: 1653 KTAVILTTHSMNEAQ 1667
++I+ TH+M + +
Sbjct: 191 NLSMIMVTHNMQQGK 205
|
Length = 246 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 2e-11
Identities = 52/206 (25%), Positives = 98/206 (47%), Gaps = 17/206 (8%)
Query: 582 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVC 641
L L + + L+G NG GKST L GL+ P G L GK +D ++GL
Sbjct: 20 LNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGK----PLDYSKRGLLAL 75
Query: 642 ----------PQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIV 691
P+ I + ++ + + GV E + V E + V +
Sbjct: 76 RQQVATVFQDPEQQIFYTDIDSDIAFSLRNL--GVPEAEITRRVDEALTLVDAQHFRHQP 133
Query: 692 VRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-KKGRIILLTT 750
++ LS G K+++++ AL+ ++ ++LDEPT+G+DP +I++I +G +++++
Sbjct: 134 IQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISS 193
Query: 751 HSMDEAEELGDRIAIMANGSLKCCGS 776
H +D E+ D + ++ G + G+
Sbjct: 194 HDIDLIYEISDAVYVLRQGQILTHGA 219
|
Length = 271 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 2e-11
Identities = 51/186 (27%), Positives = 90/186 (48%), Gaps = 25/186 (13%)
Query: 574 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDE 633
G ++ + L L +IL LLG NGAGKST + +++GL+ P G + +
Sbjct: 15 GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEG--------VIKRNGK 66
Query: 634 IRKGLGVCPQ---YDILFPELTVREHLEMFAVLK-GVKEELLESVVAEMVDEVGLADKVN 689
+R +G PQ D P LTV F L+ G K + + + V ++
Sbjct: 67 LR--IGYVPQKLYLDTTLP-LTV----NRFLRLRPGTK----KEDILPALKRVQAGHLID 115
Query: 690 IVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIIL 747
++ LSGG +++ L AL+ ++++LDEPT G+D + LI ++++ +L
Sbjct: 116 APMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVL 175
Query: 748 LTTHSM 753
+ +H +
Sbjct: 176 MVSHDL 181
|
Length = 251 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 2e-11
Identities = 54/206 (26%), Positives = 96/206 (46%), Gaps = 21/206 (10%)
Query: 1485 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR- 1543
A+ +F+V G +G NG+GK+T + G G I G+ R +A ++
Sbjct: 22 ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTR---QALQKN 78
Query: 1544 LIGYCPQ-------FDALLEYLTVQE---HLELYARIKGVAEYRMDDVVMEKLVEFDLLK 1593
L+ Y PQ F L+E + + H+ R K R +V L D+++
Sbjct: 79 LVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKK----RDRQIVTAALARVDMVE 134
Query: 1594 HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGK 1653
+ LSGG K+++ +A A+ +++LDEP TG+D + + ++ L +GK
Sbjct: 135 FRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD-EGK 193
Query: 1654 TAVILTTHSMNEAQALCTRIGIMVGG 1679
T ++++TH++ C +MV G
Sbjct: 194 T-MLVSTHNLGSVTEFCDYT-VMVKG 217
|
Length = 272 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 2e-11
Identities = 59/222 (26%), Positives = 108/222 (48%), Gaps = 23/222 (10%)
Query: 582 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGL-- 638
L TL Q +AL+G +GAGK++ ++ L+G +P G + G + D + RK L
Sbjct: 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFLP-YQGSLKINGIELRELDPESWRKHLSW 427
Query: 639 -GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESV-----VAEMVDEVGLADKVNIVV 692
G PQ P T+R+++ + +E L+ V+E + L ++ +
Sbjct: 428 VGQNPQ----LPHGTLRDNVLLGNP--DASDEQLQQALENAWVSEFLPL--LPQGLDTPI 479
Query: 693 R----ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILL 748
LS G ++L+L AL+ ++++LDEPT+ +D +S +L Q + + + L+
Sbjct: 480 GDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLM 539
Query: 749 TTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTL 790
TH +++ + D+I +M +G + G L G+ TL
Sbjct: 540 VTHQLEDLAQW-DQIWVMQDGQIVQQGDYAELSQAGGLFATL 580
|
Length = 588 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 2e-11
Identities = 57/202 (28%), Positives = 102/202 (50%), Gaps = 20/202 (9%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 636
+V + LT+ ++L L+G NG+GKST +L GL P +G+ L+ GK +TA ++ RK
Sbjct: 338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRK 397
Query: 637 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVN-----IV 691
+ +F + + + L L + ++V + ++ + +A K+ I
Sbjct: 398 ------LFSAVFTDFHLFDQL-----LGPEGKPANPALVEKWLERLKMAHKLELEDGRIS 446
Query: 692 VRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ-LIKKIK-KGRIILLT 749
LS G K++L+L +AL + +++LDE + DP+ R +Q L+ ++ G+ I
Sbjct: 447 NLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAI 506
Query: 750 THSMDEAEELGDRIAIMANGSL 771
+H D DR+ M NG L
Sbjct: 507 SHD-DHYFIHADRLLEMRNGQL 527
|
Length = 547 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 3e-11
Identities = 61/225 (27%), Positives = 118/225 (52%), Gaps = 15/225 (6%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I+I + K + G +N + L + Q++ALLG +G+GK+T + ++ GL T+G
Sbjct: 3 IEIANIKKSF----GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGH 58
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREH----LEMFAVLKGVKEELLESVV 675
G +++ RK +G Q+ LF +TV ++ L + + +++ V
Sbjct: 59 IRFHGTDVSRLHARDRK-VGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKV 117
Query: 676 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP-YSMRL-T 733
++++ V LA + LSGG K++++L AL + ++++LDEP +D L
Sbjct: 118 TQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRR 177
Query: 734 W--QLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
W QL +++K + + TH +EA E+ DR+ +M+ G+++ G+
Sbjct: 178 WLRQLHEELKFTSVFV--THDQEEAMEVADRVVVMSQGNIEQAGT 220
|
Length = 353 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 3e-11
Identities = 61/228 (26%), Positives = 114/228 (50%), Gaps = 23/228 (10%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIPP- 615
++ R + Y K+ A+ + L + E + A +G +G GKST ++ + I
Sbjct: 20 MRARDVSVFYGEKQ----ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGC 75
Query: 616 -TTGDALVFGKNITA---DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV---KE 668
TG + G++I D+ E+R +G+ Q FP+ ++ E++ + G+ K
Sbjct: 76 RVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKA 134
Query: 669 ELLESVV-----AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTS 723
EL E V A + +EV D+++ LSGG +++L + A+ +V+++DEP S
Sbjct: 135 ELDEIVETSLRKAGLWEEV--KDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCS 192
Query: 724 GMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 771
+DP + +LI ++++ I++ THSM +A + R A G+L
Sbjct: 193 ALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNL 240
|
Length = 267 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 67.5 bits (166), Expect = 4e-11
Identities = 72/262 (27%), Positives = 125/262 (47%), Gaps = 44/262 (16%)
Query: 1459 SVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG 1518
+ D + L N+ YP + + L+ ++AGE LG G GK+T L +++
Sbjct: 333 AADQVSLTLNNVSFTYPDQPQP----VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTR 388
Query: 1519 EEYPTDGTAFIFGKDIRSDPKAA-RRLIGYCPQ----FDALLEYLTVQEHLELYARIKGV 1573
P G + G+ I +AA R+ I Q F A T++++L L A
Sbjct: 389 AWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA-----TLRDNLLLAA--PNA 441
Query: 1574 AEYRMDDVV----MEKLVEFDL-----LKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1624
++ + +V+ +EKL+E D L + LSGG +R+L +A A++ D P+++
Sbjct: 442 SDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQ---LSGGEQRRLGIARALLHDAPLLL 498
Query: 1625 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH------SMNEAQALCTRIGIMVG 1678
LDEP+ G+D +R + E+++ + Q KT V++ TH + RI +M
Sbjct: 499 LDEPTEGLDAETERQILELLAEHA--QNKT-VLMITHRLTGLEQFD-------RICVMDN 548
Query: 1679 GQLRCIGSPQHLKTRFGNFLEL 1700
GQ+ G+ Q L + G + +L
Sbjct: 549 GQIIEQGTHQELLAQQGRYYQL 570
|
Length = 574 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 4e-11
Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 34/212 (16%)
Query: 1479 RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG-EEY-PTDGTAFIFGKDIRS 1536
K + + +++ GE +G NG+GK+T I G +Y T+G G+DI
Sbjct: 9 SVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITD 68
Query: 1537 DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAK 1596
P R +G +L Q I GV + D + F
Sbjct: 69 LPPEERARLGI---------FLAFQYP----PEIPGV---KNADFLRYVNEGF------- 105
Query: 1597 KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAV 1656
SGG K++ + ++ +P + ILDEP +G+D A R + EVI++L R+ +V
Sbjct: 106 ------SGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKL--REEGKSV 157
Query: 1657 ILTTHSMNEAQAL-CTRIGIMVGGQLRCIGSP 1687
++ TH + R+ ++ G++ G
Sbjct: 158 LIITHYQRLLDYIKPDRVHVLYDGRIVKSGDK 189
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 4e-11
Identities = 53/229 (23%), Positives = 107/229 (46%), Gaps = 25/229 (10%)
Query: 1485 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARR 1543
+ ++ +++ +G +G+GK+T ++ G G + G ++ D R+
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQ 548
Query: 1544 LIGYCPQ----FD-ALLEYL-------TVQEHLELYARIKGVAEYRMDDVVMEKLVEFDL 1591
I Y PQ F ++LE L Q+ + I AE + D M + +L
Sbjct: 549 FINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEI---AEIKDDIENMPLGYQTEL 605
Query: 1592 LKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQ 1651
+ ++SGG K+++++A A++ D ++ILDE ++ +D I ++ ++++ L Q
Sbjct: 606 SEE----GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEK---KIVNNLLNLQ 658
Query: 1652 GKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1700
KT +I H ++ A+ +I ++ G++ GS L R G + L
Sbjct: 659 DKT-IIFVAHRLSVAK-QSDKIIVLDHGKIIEQGSHDELLDRNGFYASL 705
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 4e-11
Identities = 37/142 (26%), Positives = 69/142 (48%), Gaps = 15/142 (10%)
Query: 585 TLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQY 644
++ E++++ +LG NG GK+T I ML G++ P GD + ++ PQY
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYK-----------PQY 69
Query: 645 DILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLS 704
E TVR+ L ++ K E+ + + ++ V LSGG ++++
Sbjct: 70 IKADYEGTVRDLL--SSITKDFYTH--PYFKTEIAKPLQIEQILDREVPELSGGELQRVA 125
Query: 705 LGIALIGDSKVVILDEPTSGMD 726
+ L D+ + +LDEP++ +D
Sbjct: 126 IAACLSKDADIYLLDEPSAYLD 147
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 4e-11
Identities = 69/255 (27%), Positives = 116/255 (45%), Gaps = 42/255 (16%)
Query: 1467 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1526
+ L K+Y GK ++F + GE G +G +G+GKTT L ISG P GT
Sbjct: 9 VSGLSKLYGPGK------GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGT 62
Query: 1527 -AFIFGK----DIRSDPKAARRLI-----GYCPQ--FDALLEYLT----VQEHL-----E 1565
+ D+ + +A RR + G+ Q D L ++ + E L
Sbjct: 63 VTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGAR 122
Query: 1566 LYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVIL 1625
Y I+ A+ +++V E DL + P T SGG +++L +A ++ P +V +
Sbjct: 123 HYGNIRAEAQDWLEEV------EIDLDRIDDLPR-TFSGGMQQRLQIARNLVTRPRLVFM 175
Query: 1626 DEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL---- 1681
DEP+ G+D + + +++ L G AV++ TH + A+ L R+ +M GQ+
Sbjct: 176 DEPTGGLDVSVQARLLDLLRGLVRELG-LAVVIVTHDLAVARLLADRLMVMKQGQVVESG 234
Query: 1682 ---RCIGSPQHLKTR 1693
R + P H T+
Sbjct: 235 LTDRVLDDPHHPYTQ 249
|
Length = 258 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 4e-11
Identities = 64/251 (25%), Positives = 112/251 (44%), Gaps = 44/251 (17%)
Query: 1468 RNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTA 1527
R L K+Y K ++F + GE G +G +G+GKTT L+ +S P G
Sbjct: 10 RGLTKLYGPRK------GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEV 63
Query: 1528 FIFGK-----DIRSDPKAARRLI-----GYCPQF--DALLEYLT----VQEHL-----EL 1566
+ D+ + +A RR + G+ Q D L ++ + E L
Sbjct: 64 HYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARH 123
Query: 1567 YARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILD 1626
Y I+ A ++ V E D + P+ T SGG +++L +A ++ P +V +D
Sbjct: 124 YGDIRATAGDWLERV------EIDAARIDDLPT-TFSGGMQQRLQIARNLVTHPRLVFMD 176
Query: 1627 EPSTGMD-PIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL---- 1681
EP+ G+D + R + +++ L G AV++ TH + A+ L R+ +M G++
Sbjct: 177 EPTGGLDVSVQARLL-DLLRGLVRELG-LAVVIVTHDLAVARLLAHRLLVMKQGRVVESG 234
Query: 1682 ---RCIGSPQH 1689
+ + PQH
Sbjct: 235 LTDQVLDDPQH 245
|
Length = 258 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 5e-11
Identities = 57/224 (25%), Positives = 117/224 (52%), Gaps = 22/224 (9%)
Query: 1489 LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIR-----------SD 1537
++ AG+ +G++G+GK+T L I+ E P+ G+ + G++IR +D
Sbjct: 25 VSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPAD 84
Query: 1538 PKAARRL---IGYCPQFDALLEYLTVQEH-LELYARIKGVAEYRMDDVVMEKLVEFDLL- 1592
+ +RL +G Q L ++TV E+ +E + GV++ + + L + +
Sbjct: 85 KRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAE 144
Query: 1593 KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1652
K P+ LSGG ++++++A A+ +P +++ DEP++ +DP + +V+ L+ +G
Sbjct: 145 KADAYPAH-LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLA-EEG 202
Query: 1653 KTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN 1696
+T V + TH M A+ + + + + G++ G P+ + FGN
Sbjct: 203 RTMV-VVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQV---FGN 242
|
Length = 256 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 5e-11
Identities = 54/216 (25%), Positives = 101/216 (46%), Gaps = 37/216 (17%)
Query: 1483 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1542
+ + ++ ++ G+ LG NGAGK+T + ++ G P +G I+ + K
Sbjct: 17 RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGV-------IKRNGKLR- 68
Query: 1543 RLIGYCPQ---FDALLEYLTVQEHLELYARIKGVAEYRMDDV--VMEKLVEFDLLKHAKK 1597
IGY PQ D L LTV L L K +D+ ++++ L+
Sbjct: 69 --IGYVPQKLYLDTTLP-LTVNRFLRLRPGTKK------EDILPALKRVQAGHLIDA--- 116
Query: 1598 PSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVI 1657
P LSGG +++ +A A++ P +++LDEP+ G+D + ++++I +L AV+
Sbjct: 117 PMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELD-CAVL 175
Query: 1658 LTTHSMNEAQA-----LCTRIGIMVGGQLRCIGSPQ 1688
+ +H ++ A LC + + C G+P+
Sbjct: 176 MVSHDLHLVMAKTDEVLC------LNHHICCSGTPE 205
|
Length = 251 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 5e-11
Identities = 50/208 (24%), Positives = 100/208 (48%), Gaps = 17/208 (8%)
Query: 581 SLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI----TADMDEIRK 636
L + +IL L+G NGAGKST ++ + GL+P +G G+ + A++ R
Sbjct: 14 PLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRA 72
Query: 637 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALS 696
L Q F + V ++L + + E + S + E+ + +GL DK+ V LS
Sbjct: 73 YL--SQQQTPPF-AMPVFQYLTLH-QPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLS 128
Query: 697 GGMKRKLSLGIALIG-------DSKVVILDEPTSGMDPYSMRLTWQLIKKI-KKGRIILL 748
GG +++ L ++ ++++LDEP + +D +L+ ++ ++G +++
Sbjct: 129 GGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVM 188
Query: 749 TTHSMDEAEELGDRIAIMANGSLKCCGS 776
++H ++ DR+ ++ G L G
Sbjct: 189 SSHDLNHTLRHADRVWLLKQGKLLASGR 216
|
Length = 248 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (154), Expect = 5e-11
Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 12/177 (6%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 638
+ + L +L L G NGAGK+T + ++ GL+ P G+ L ++I D+ +K L
Sbjct: 17 LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQL 76
Query: 639 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGG 698
+ P LT+RE+ L + + E+ L ++ LS G
Sbjct: 77 CFVGHRSGINPYLTLREN-----CLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSG 131
Query: 699 MKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI----KKGRIILLTTH 751
KR+++L + +K+ +LDEP +D S+ +I KI KG +LLT+H
Sbjct: 132 QKRQVALLRLWMSKAKLWLLDEPLVALDELSLLT---IITKIQEHRAKGGAVLLTSH 185
|
Length = 200 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.6 bits (157), Expect = 6e-11
Identities = 58/235 (24%), Positives = 103/235 (43%), Gaps = 22/235 (9%)
Query: 1485 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMIS--GEEYPT---DGTAFIFGKDI---RS 1536
AV ++ +G +G GK+T L I+ + P+ G + DI
Sbjct: 19 AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78
Query: 1537 DPKAARRLIGYCPQ----FDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL 1592
DP + RR +G Q F A+ Y V +L R+ + + ++++ +D +
Sbjct: 79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEV 138
Query: 1593 K-HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQ 1651
K K + LSGG +++L +A + P ++++DEP++ +DPI+ + E+I L
Sbjct: 139 KDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-- 196
Query: 1652 GKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTE 1706
K +I+ TH+M +A + G L G + + F E K TE
Sbjct: 197 -KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKI------FTTPEKKQTE 244
|
Length = 252 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 6e-11
Identities = 58/219 (26%), Positives = 99/219 (45%), Gaps = 16/219 (7%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAV-HSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1522
++ R++ K Y G V V + F++ AGE LG NGAGK+T + +I+G P
Sbjct: 11 LLCARSISKQYSG-------VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP 63
Query: 1523 TDGTAFIFGKDI-RSDPKAARRL-IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDD 1580
GT I G R P A +L I PQ L L+V+E++ + + +M
Sbjct: 64 DSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQ 123
Query: 1581 VVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1640
++ + DL A +L +++ + + ++ D I+ILDEP+ + P +
Sbjct: 124 LLAALGCQLDLDSSAG----SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERL 179
Query: 1641 WEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGG 1679
+ I L ++ +H + E + L RI +M G
Sbjct: 180 FSRIREL--LAQGVGIVFISHKLPEIRQLADRISVMRDG 216
|
Length = 510 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 6e-11
Identities = 54/198 (27%), Positives = 98/198 (49%), Gaps = 13/198 (6%)
Query: 1493 VQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR-----RLIGY 1547
V+ GE +G +G+GK+T L++++G + + G + G+ + + AR + +G+
Sbjct: 33 VKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGF 92
Query: 1548 CPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNK 1607
Q L+ L E++EL A ++G + + + L + L K LSGG +
Sbjct: 93 VFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQ 152
Query: 1608 RKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRL---STRQGKTAVILTTHSMN 1664
+++++A A G P ++ DEP+ +D R + I+ L R+ T +IL TH
Sbjct: 153 QRVALARAFNGRPDVLFADEPTGNLD----RQTGDKIADLLFSLNREHGTTLILVTHD-L 207
Query: 1665 EAQALCTRIGIMVGGQLR 1682
+ A C R +V GQL+
Sbjct: 208 QLAARCDRRLRLVNGQLQ 225
|
Length = 228 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 6e-11
Identities = 62/246 (25%), Positives = 121/246 (49%), Gaps = 30/246 (12%)
Query: 577 CAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP-----TTGDALVFGKNIT-AD 630
VN + L + + LAL+G +G+GKS T ++ L+P +GD G+++ A
Sbjct: 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82
Query: 631 MDEIRKGLGVCPQYDILFPELTV---------REHLEMFAVLKGVKEELLESVVAEMVDE 681
+R G + ++F E V ++ E+ ++ +G++ E + +D
Sbjct: 83 EQTLRGVRG--NKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDR 140
Query: 682 VGL---ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIK 738
VG+ A ++ LSGG ++++ + +AL+ +++I DEPT+ +D QL++
Sbjct: 141 VGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLR 200
Query: 739 KIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCC----GSSLFLKHQYGVGYTLTL 792
++++ +L TH++ +L DR+A+M NG +C ++LF + YT L
Sbjct: 201 ELQQELNMGLLFITHNLSIVRKLADRVAVMQNG--RCVEQNRAATLFSAPTH--PYTQKL 256
Query: 793 VKSAPD 798
+ S P
Sbjct: 257 LNSEPS 262
|
Length = 529 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 7e-11
Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 30/180 (16%)
Query: 1488 SLTFSVQAG-----ECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1542
T V+ G E G LG NG GKTT + M++G P +G D +
Sbjct: 12 EFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEG-----------DIEIEL 60
Query: 1543 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV----MEKLVEFDLLKHAKKP 1598
+ Y PQ+ TV++ L + Y ++ +E++++ ++
Sbjct: 61 DTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVP------ 114
Query: 1599 SFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM-WEVISRLSTRQGKTAVI 1657
LSGG +++++A + D I +LDEPS +D + +R M +VI R + KTA +
Sbjct: 115 --ELSGGELQRVAIAACLSKDADIYLLDEPSAYLD-VEQRLMASKVIRRFAENNEKTAFV 171
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (157), Expect = 7e-11
Identities = 50/222 (22%), Positives = 112/222 (50%), Gaps = 24/222 (10%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP----- 614
I++ L Y T++ + + + +Y++++ A++G +G GKST + L +
Sbjct: 8 IKVNNLSFYYDTQK----ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEV 63
Query: 615 PTTGDALVFGKNI---TADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK---- 667
G F +NI +++ +R+ + + LFP ++V +++ + G +
Sbjct: 64 RVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLE 122
Query: 668 -EELLESVV--AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSG 724
++++ES + A++ DE+ K++ LSGG +++L + AL KV+++DEP G
Sbjct: 123 IDDIVESALKDADLWDEI--KHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFG 180
Query: 725 MDPYSMRLTWQLIK--KIKKGRIILLTTHSMDEAEELGDRIA 764
+DP + LI+ +++ +++ +H++ + L D A
Sbjct: 181 LDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTA 222
|
Length = 261 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 8e-11
Identities = 60/230 (26%), Positives = 108/230 (46%), Gaps = 29/230 (12%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVG----LIPP 615
++I+ LH K + + LT+ + +I A++G NG+GKST + G +
Sbjct: 1 LKIKDLHVSVEDKE----ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV-- 54
Query: 616 TTGDALVFGKNITA-DMDEI-RKGLGVCPQYDILFPELTVREHLE--MFAVLKGVKEE-- 669
T+G L G+++ + DE R GL + QY P ++ E L + A EE
Sbjct: 55 TSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPL 114
Query: 670 -------LLESVVAEM-VDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEP 721
LL++ +A + +DE L VN SGG K++ + + + K+ ILDE
Sbjct: 115 DLLDFLKLLKAKLALLGMDEEFLNRSVNE---GFSGGEKKRNEILQMALLEPKLAILDEI 171
Query: 722 TSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELG-DRIAIMANG 769
SG+D ++++ + I +++ R L+ TH + D + ++ +G
Sbjct: 172 DSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDG 221
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 1e-10
Identities = 51/233 (21%), Positives = 104/233 (44%), Gaps = 23/233 (9%)
Query: 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG--- 1518
II ++ Y GK A+ + E +G +G GK+T L ++
Sbjct: 3 KKIITSSDVHLFY--GK----FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMND 56
Query: 1519 --EEYPTDGTAFIFGKDI---RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGV 1573
G + G++I D R+ +G Q + ++ E++ R+ GV
Sbjct: 57 LIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPF-SIYENVIYGLRLAGV 115
Query: 1574 AEYR-MDDVVMEKL----VEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEP 1628
+ +D+ V L + ++ H + + +LSGG ++++ +A + P +++LDEP
Sbjct: 116 KDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEP 175
Query: 1629 STGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
++ +DPI+ ++ + L + + +IL THSM++A + + + G L
Sbjct: 176 TSALDPISST---QIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNL 225
|
Length = 252 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 1e-10
Identities = 60/262 (22%), Positives = 119/262 (45%), Gaps = 38/262 (14%)
Query: 1461 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKT-TTLSMI--- 1516
++ +RNL + + AV ++F ++AGE +G +G+GK+ T LS++
Sbjct: 3 TMPLLSIRNLSVAF--HQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLL 60
Query: 1517 --SGEEYPTDGTAFIFGKDI-RSDPKAARRL----IGYCPQ--FDALLEYLTVQEHL-EL 1566
+P+ G+ G+D+ + + R + IG Q +L T+ + L E+
Sbjct: 61 PSPAAAHPS-GSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEV 119
Query: 1567 YARIKGV----AEYRMDDVVMEKLVEFDLLKHAKKP----SFTLSGGNKRKLSVAIAMIG 1618
+G+ A R +L+E + +K LSGG ++++ +A+A+
Sbjct: 120 LRLHRGLSRAAARARA-----LELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALAN 174
Query: 1619 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVG 1678
+P ++I DEP+T +D + + +++ L G A++ TH + + R+ +M
Sbjct: 175 EPDLLIADEPTTALDVTVQAQILDLLKELQAELG-MAILFITHDLGIVRKFADRVYVMQH 233
Query: 1679 GQL-------RCIGSPQHLKTR 1693
G++ +PQH TR
Sbjct: 234 GEIVETGTTETLFAAPQHPYTR 255
|
Length = 534 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 1e-10
Identities = 58/204 (28%), Positives = 99/204 (48%), Gaps = 28/204 (13%)
Query: 582 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT-ADMDEIRKGLGV 640
L L + + + ++G +G+GKST +L L P G LV G ++ AD +R+ +GV
Sbjct: 476 LNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGV 535
Query: 641 CPQYDILF------------PELTVREHLEMFAVLKGVKE---ELLESVVAEMVDEVGLA 685
Q ++LF P EH+ A L G + EL + E V E G
Sbjct: 536 VLQENVLFSRSIRDNIALCNPGAPF-EHVIHAAKLAGAHDFISELPQGYNTE-VGEKGAN 593
Query: 686 DKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRI 745
LSGG ++++++ AL+G+ +++I DE TS +D S L + +++I +GR
Sbjct: 594 ---------LSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRT 644
Query: 746 ILLTTHSMDEAEELGDRIAIMANG 769
+++ H + DRI ++ G
Sbjct: 645 VIIIAHRLS-TVRACDRIIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 2e-10
Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 24/180 (13%)
Query: 1479 RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLS----MISGEEYPTDGTAFIFGKDI 1534
R + + +++FS++ GE G +G G+GK++ L ++ + G+ I G DI
Sbjct: 13 RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE----LSSGSILIDGVDI 68
Query: 1535 RS-DPKAARRLIGYCPQFDALLEYLTVQEHL---------ELYARIKGVAEYRMDDVVME 1584
R I PQ D +L T++ +L EL+ ++ V + + V
Sbjct: 69 SKIGLHDLRSRISIIPQ-DPVLFSGTIRSNLDPFGEYSDEELWQALERVG---LKEFVES 124
Query: 1585 KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVI 1644
D + LS G ++ L +A A++ I++LDE + +DP + + I
Sbjct: 125 LPGGLD-TVVEEGGEN-LSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTI 182
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 2e-10
Identities = 61/227 (26%), Positives = 102/227 (44%), Gaps = 41/227 (18%)
Query: 1461 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG-- 1518
N II L+N+ Y AV ++ + G+ +G +G GK+T L ++
Sbjct: 10 KNIIISLQNVTISY------GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMN 63
Query: 1519 ---EEYPTDGTAFIFGKDI---RSDPKAARRLIGYCPQ----FDALLEYLTVQEHLELYA 1568
E G G D+ R DP RR IG Q F ++ E++ A
Sbjct: 64 DLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-----SIYENIAFGA 118
Query: 1569 RIKGVAEYRMDDVVMEKLVEFDLLKHA---------KKPSFTLSGGNKRKLSVAIAMIGD 1619
RI G Y D M++LVE L K A + ++LSGG +++L +A + +
Sbjct: 119 RING---YTGD---MDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIE 172
Query: 1620 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEA 1666
P ++++DEP + +DPI+ + E + L +++ TH+M +A
Sbjct: 173 PEVILMDEPCSALDPISTLKIEETMHELKKN---FTIVIVTHNMQQA 216
|
Length = 269 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 2e-10
Identities = 61/174 (35%), Positives = 94/174 (54%), Gaps = 22/174 (12%)
Query: 1502 LGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD--PKAAR---RLIGYCPQFDALLE 1556
+G +GAGKTT + +++G + T G +I G DIR PK R+ GYC Q D
Sbjct: 912 MGVSGAGKTTLMDVLAGRK--TGG--YIEG-DIRISGFPKKQETFARISGYCEQNDIHSP 966
Query: 1557 YLTVQEHLELYARI---KGVAEY---RMDDVVMEKLVEFDLLKHA--KKPSFT-LSGGNK 1607
+TV+E L A + K V++ D VME LVE D LK A P T LS +
Sbjct: 967 QVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVME-LVELDNLKDAIVGLPGVTGLSTEQR 1025
Query: 1608 RKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1661
++L++A+ ++ +P I+ +DEP++G+D A + + R + G+T V+ T H
Sbjct: 1026 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTGRT-VVCTIH 1077
|
Length = 1470 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 2e-10
Identities = 64/214 (29%), Positives = 105/214 (49%), Gaps = 37/214 (17%)
Query: 582 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMD-------EI 634
+ LTL I A+ G +GAGK++ I+ + GL P G +V + D + E
Sbjct: 17 VNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGR-IVLNGRVLFDAEKGICLPPEK 75
Query: 635 RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVR- 693
R+ +G Q LFP VR +L G+ +S+VA+ V L ++ R
Sbjct: 76 RR-IGYVFQDARLFPHYKVRGNL-----RYGMA----KSMVAQFDKIVALLGIEPLLDRY 125
Query: 694 --ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD--------PYSMRLTWQLIKKIKKG 743
+LSGG K+++++G AL+ +++++DEP + +D PY RL ++I
Sbjct: 126 PGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLA----REIN-- 179
Query: 744 RI-ILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
I IL +HS+DE L DR+ ++ G +K G
Sbjct: 180 -IPILYVSHSLDEILRLADRVVVLEQGKVKAFGP 212
|
Length = 352 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 2e-10
Identities = 52/220 (23%), Positives = 88/220 (40%), Gaps = 41/220 (18%)
Query: 1476 GGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIR 1535
+ + + V GE +G G+GK++ LS + GE G+ + G
Sbjct: 11 DSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGS--- 67
Query: 1536 SDPKAARRLIGYCPQFDALLEYLTVQE----HLELYARIKGVAEYRMDDVV--------M 1583
I Y Q ++ T++E E R + V+ +
Sbjct: 68 ---------IAYVSQE-PWIQNGTIRENILFGKPFD-------EERYEKVIKACALEPDL 110
Query: 1584 EKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP-IAKRFMWE 1642
E L + DL + +K LSGG K+++S+A A+ D I +LD+P + +D + +
Sbjct: 111 EILPDGDLTEIGEK-GINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFEN 169
Query: 1643 VISRLSTRQGKTAVILTTHSMNEAQAL--CTRIGIMVGGQ 1680
I L KT IL TH + Q L +I ++ G+
Sbjct: 170 CILGL-LLNNKT-RILVTHQL---QLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 3e-10
Identities = 61/209 (29%), Positives = 110/209 (52%), Gaps = 21/209 (10%)
Query: 1467 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1526
L + K Y G + ++ +H + AG+ +G +G GK+T L +++G E P+ G
Sbjct: 15 LNAVSKRY-GERTVLNQLDLH-----IPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAG- 67
Query: 1527 AFIFGKDIRSDPKAARRLIGYCPQF-DA-LLEYLTVQEHLELYARIKGVAEYRMDDVVME 1584
+ G ++ + RL+ F DA LL + V +++ L +KG ++R D ++
Sbjct: 68 ELLAGTAPLAEAREDTRLM-----FQDARLLPWKKVIDNVGL--GLKG--QWR--DAALQ 116
Query: 1585 KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVI 1644
L L A + LSGG K+++++A A+I P +++LDEP +D + + M ++I
Sbjct: 117 ALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLI 176
Query: 1645 SRLSTRQGKTAVILTTHSMNEAQALCTRI 1673
L + G T V+L TH ++EA A+ R+
Sbjct: 177 ESLWQQHGFT-VLLVTHDVSEAVAMADRV 204
|
Length = 257 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 3e-10
Identities = 57/232 (24%), Positives = 116/232 (50%), Gaps = 25/232 (10%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+ + LHK Y G + + L +++++G +G+GKST + + L P+ G
Sbjct: 6 LNVIDLHKRY----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGS 61
Query: 620 ALVFGKNITADMDE--------------IRKGLGVCPQYDILFPELTVREHLEMFA---V 662
+V G+ I D+ +R L + Q+ L+ +TV E++ M A V
Sbjct: 62 IVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENV-MEAPIQV 120
Query: 663 LKGVKEELLESVVAEMVDEVGLADKVNIVVRA-LSGGMKRKLSLGIALIGDSKVVILDEP 721
L K+E E V + + +VG+ ++ LSGG ++++S+ AL + +V++ DEP
Sbjct: 121 LGLSKQEARERAV-KYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEP 179
Query: 722 TSGMDPYSMRLTWQLIKKI-KKGRIILLTTHSMDEAEELGDRIAIMANGSLK 772
TS +DP + ++++++ ++G+ +++ TH M A + + + G ++
Sbjct: 180 TSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 231
|
Length = 257 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 3e-10
Identities = 74/310 (23%), Positives = 139/310 (44%), Gaps = 57/310 (18%)
Query: 1415 TRHRLCNTPS-SYLEPLLQSSSESDTLDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKV 1473
L + P+ Y + LL S D + L E + ++ + L+
Sbjct: 240 RAATLFSAPTHPYTQKLLNSEPSGDPVPLPEP---------------ASPLLDVEQLQVA 284
Query: 1474 YPGGK-----RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTT----LSMISGEEYPTD 1524
+P K D V V +++F+++ GE G +G +G+GK+TT L +I+ +
Sbjct: 285 FPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ----- 339
Query: 1525 GTAFIFGKDIRS-DPKA---ARRLIGYCPQ--FDALLEYLTVQ----EHLELYARIKGVA 1574
G + G+ + + + + R I Q +L L V E L ++ A
Sbjct: 340 GEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAA 399
Query: 1575 EYRMDDV--VMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGM 1632
+ R V VME+ V D + P+ SGG ++++++A A+I P ++ILDEP++ +
Sbjct: 400 Q-REQQVIAVMEE-VGLDPETRHRYPA-EFSGGQRQRIAIARALILKPSLIILDEPTSSL 456
Query: 1633 DPIAKRFMWEVISRLSTRQGK--TAVILTTHSMNEAQALCTRIGIMVGGQL-------RC 1683
D K ++++ L + Q K A + +H ++ +ALC ++ ++ G++ R
Sbjct: 457 D---KTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERV 513
Query: 1684 IGSPQHLKTR 1693
+PQ TR
Sbjct: 514 FAAPQQEYTR 523
|
Length = 529 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 3e-10
Identities = 58/211 (27%), Positives = 109/211 (51%), Gaps = 31/211 (14%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+ ++ L Y T+ GN N + ++ Q + LLG G+GKST +S + L+ T GD
Sbjct: 3 MTVKDLTAKY-TEGGNAVLEN-ISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGD 59
Query: 620 ALVFGKNI-TADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEM 678
+ G + + + + RK GV PQ +F T R++L+ + K EE+ + +
Sbjct: 60 IQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYG--KWSDEEIWK-----V 111
Query: 679 VDEVGL-------ADKVNIVVR----ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP 727
+EVGL +++ V+ LS G K+ + L +++ +K+++LDEP++ +DP
Sbjct: 112 AEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDP 171
Query: 728 YSMRLTWQLIKKIKK----GRIILLTTHSMD 754
+T+Q+I+K K ++L+ H ++
Sbjct: 172 ----ITYQVIRKTLKQAFADCTVILSEHRIE 198
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 3e-10
Identities = 61/241 (25%), Positives = 102/241 (42%), Gaps = 77/241 (31%)
Query: 1461 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE 1520
+ I L N G + + +H+L++ V GE + +G NGAGK+T LS+I+G+
Sbjct: 257 NEPRIVLNN------GVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDH 310
Query: 1521 ---YPTDGTAFIFGK---------DIRSDPKAARRLIGYCPQ------------------ 1550
Y D T +FG+ DI+ + IGY
Sbjct: 311 PQGYSNDLT--LFGRRRGSGETIWDIK-------KHIGYVSSSLHLDYRVSTSVRNVILS 361
Query: 1551 --FDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL----KHAKKPSFTLSG 1604
FD++ Y V + + A + L D+L + A P +LS
Sbjct: 362 GFFDSIGIYQAVSDRQQKLA--------------QQWL---DILGIDKRTADAPFHSLSW 404
Query: 1605 GNKRKLSVAIAMIGDPPIVILDEPSTGMDPI----AKRFMWEVISRLSTRQGKTAVILTT 1660
G +R + A++ P ++ILDEP G+DP+ +RF+ +IS +G+T ++ +
Sbjct: 405 GQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLIS-----EGETQLLFVS 459
Query: 1661 H 1661
H
Sbjct: 460 H 460
|
Length = 490 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 3e-10
Identities = 45/165 (27%), Positives = 87/165 (52%), Gaps = 17/165 (10%)
Query: 1480 SDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DP 1538
+++ V ++F +AG+ +G GAGKTT ++++ PT G I G DI +
Sbjct: 345 ANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTR 404
Query: 1539 KAARRLIGYCPQFDALLEYLTVQEHL----------ELYARIKGVAEYRMDDVVMEKLVE 1588
++ R+ I Q DA L +++E++ E+Y K A + D ++++
Sbjct: 405 ESLRKSIATVFQ-DAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAH---DFILKRSNG 460
Query: 1589 FDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMD 1633
+D L + LSGG +++L++A A++ + PI++LDE ++ +D
Sbjct: 461 YDTLVGERGNR--LSGGERQRLAIARAILKNAPILVLDEATSALD 503
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (150), Expect = 4e-10
Identities = 51/215 (23%), Positives = 101/215 (46%), Gaps = 27/215 (12%)
Query: 1485 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMIS--GEEYPT---DGTAFIFGKDIRSDPK 1539
A+ ++ ++ F+G +G GK+T L + + + P +G I G++I
Sbjct: 18 ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGV 77
Query: 1540 AARRL---IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHA- 1595
L +G Q ++ E++ R+ GV D+ + + VE + LK A
Sbjct: 78 QVDELRKNVGMVFQRPNPFPK-SIFENVAYGLRVNGVK----DNAFIRQRVE-ETLKGAA 131
Query: 1596 ---------KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISR 1646
K+ +F LSGG +++L +A AM P ++++DEP++ +DPI+ + E+I
Sbjct: 132 LWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHE 191
Query: 1647 LSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
L + +++ TH+M +A + + G++
Sbjct: 192 L---KKDYTIVIVTHNMQQAARVSDKTAFFYMGEM 223
|
Length = 250 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 4e-10
Identities = 37/128 (28%), Positives = 70/128 (54%), Gaps = 8/128 (6%)
Query: 1559 TVQEHLELYARIKGVA-----EYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVA 1613
++ E++ RI+GV E R+++ + + ++ +F LSGG +++L +A
Sbjct: 114 SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIA 173
Query: 1614 IAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRI 1673
A+ DP I++ DEP++ +DPIA + E+IS L + K +++ TH+M +A +
Sbjct: 174 RALATDPEILLFDEPTSALDPIATASIEELISDL---KNKVTILIVTHNMQQAARVSDYT 230
Query: 1674 GIMVGGQL 1681
M G+L
Sbjct: 231 AYMYMGEL 238
|
Length = 265 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 4e-10
Identities = 57/211 (27%), Positives = 104/211 (49%), Gaps = 26/211 (12%)
Query: 1434 SSESDTLDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSV 1493
+ ESD D+N++ D++ E I + RNL Y + + +V ++++ V
Sbjct: 739 TDESD--DVNDEKDMEKESGE--------DIFHWRNL--TYEVKIKKEKRVILNNVDGWV 786
Query: 1494 QAGECFGFLGTNGAGKTTTLSMISGEE---YPTDGTAFIFGKDIRSDPKAARRLIGYCPQ 1550
+ G +G +GAGKTT L++++ T G + G+ + S + +R IGY Q
Sbjct: 787 KPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS---SFQRSIGYVQQ 843
Query: 1551 FDALLEYLTVQEHLELYARI---KGVAEYRMDDVVME--KLVEFDLLKHA--KKPSFTLS 1603
D L TV+E L A + K V++ + V E KL+E + A P L+
Sbjct: 844 QDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLN 903
Query: 1604 GGNKRKLSVAIAMIGDPP-IVILDEPSTGMD 1633
+++L++ + ++ P ++ LDEP++G+D
Sbjct: 904 VEQRKRLTIGVELVAKPKLLLFLDEPTSGLD 934
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 4e-10
Identities = 58/219 (26%), Positives = 104/219 (47%), Gaps = 16/219 (7%)
Query: 567 KVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKN 626
V T R A+ T+ I AL+G NG+GKST L+G + +G + G+
Sbjct: 11 DVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQP 70
Query: 627 ITADMDEIRKGL-GVCPQ---YDILFPELTVREHLEM-----FAVLKGVKEELLESVVAE 677
++K L PQ D FP L V + + M L+ K+ + V A
Sbjct: 71 TR---QALQKNLVAYVPQSEEVDWSFPVL-VEDVVMMGRYGHMGWLRRAKKRDRQIVTAA 126
Query: 678 MVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLI 737
+ V + + + + LSGG K+++ L A+ +V++LDEP +G+D + L+
Sbjct: 127 LA-RVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLL 185
Query: 738 KKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 775
++++ +G+ +L++TH++ E D +M G++ G
Sbjct: 186 RELRDEGKTMLVSTHNLGSVTEFCD-YTVMVKGTVLASG 223
|
Length = 272 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (148), Expect = 4e-10
Identities = 46/189 (24%), Positives = 89/189 (47%), Gaps = 20/189 (10%)
Query: 1486 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLI 1545
+ ++F + AG G+NGAGKTT L +I+G P G + I+ D ++ +
Sbjct: 17 LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQL 76
Query: 1546 GYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV----MEKLVEFDLLKHAKKPSFT 1601
+ + YLT++E+ LY + ++ +E L+++ P
Sbjct: 77 CFVGHRSGINPYLTLRENC-LYDIHFSPGAVGITELCRLFSLEHLIDY--------PCGL 127
Query: 1602 LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGK-TAVILTT 1660
LS G KR++++ + + +LDEP +D + + +I+++ + K AV+LT+
Sbjct: 128 LSSGQKRQVALLRLWMSKAKLWLLDEPLVALD---ELSLLTIITKIQEHRAKGGAVLLTS 184
Query: 1661 H---SMNEA 1666
H +N+A
Sbjct: 185 HQDLPLNKA 193
|
Length = 200 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 5e-10
Identities = 59/205 (28%), Positives = 92/205 (44%), Gaps = 37/205 (18%)
Query: 590 QILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD--MDEIRKGLGVCPQ---Y 644
+I+ L G GAG+S + +L G T G + GK I D IR G+ +CP+
Sbjct: 280 EIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKA 339
Query: 645 DILFPELTVRE---------HLEMFAVLKGVKE-ELLESVVAEMVDEVGLADKVNI---- 690
+ + P +V + HL ++ E E + + + NI
Sbjct: 340 EGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSL----------NIKTPS 389
Query: 691 ---VVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-KKGRII 746
++ LSGG ++K LG L D KV++LDEPT G+D + + +I ++ +G +
Sbjct: 390 REQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAV 449
Query: 747 LLTTHSMDEAEELG--DRIAIMANG 769
L S D E LG DRI +M G
Sbjct: 450 LFV--SSDLPEVLGVADRIVVMREG 472
|
Length = 501 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 5e-10
Identities = 51/207 (24%), Positives = 98/207 (47%), Gaps = 13/207 (6%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPT-TGDALVFGK--NITADMDEIR 635
V+ + +L +IL + G GAG++ + L G P G+ + GK +I IR
Sbjct: 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIR 335
Query: 636 KGLGVCPQ---YDILFPELTVREH-----LEMFAVLKGVKEELLESVVAEMVDEVGL-AD 686
G+ + P+ + P L V ++ L+ F + ++ + + +
Sbjct: 336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTA 395
Query: 687 KVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-KKGRI 745
+ + LSGG ++K L L+ + +V+ILDEPT G+D + ++LI ++ ++G
Sbjct: 396 SPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVA 455
Query: 746 ILLTTHSMDEAEELGDRIAIMANGSLK 772
I++ + + E L DR+ ++ G LK
Sbjct: 456 IIVVSSELAEVLGLSDRVLVIGEGKLK 482
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 7e-10
Identities = 47/202 (23%), Positives = 87/202 (43%), Gaps = 48/202 (23%)
Query: 589 NQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILF 648
+++A++G G+GKS+ +S L+G + +G V G + Q +
Sbjct: 31 GELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG------------SIAYVSQEPWIQ 78
Query: 649 PELTVRE----HLEMFAVLKGVKEELLESVV---------AEMVD----EVGLADK-VNI 690
T+RE EE E V+ + D E+G +K +N
Sbjct: 79 NG-TIRENILFGKPF-------DEERYEKVIKACALEPDLEILPDGDLTEIG--EKGIN- 127
Query: 691 VVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ--LIKKIKKGRIILL 748
LSGG K+++SL A+ D+ + +LD+P S +D + R ++ ++ + + +L
Sbjct: 128 ----LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRIL 183
Query: 749 TTHSMDEAEELGDRIAIMANGS 770
TH + D+I ++ NG
Sbjct: 184 VTHQLQLLPHA-DQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 7e-10
Identities = 58/193 (30%), Positives = 92/193 (47%), Gaps = 26/193 (13%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP----TTGDALVFGKNITADMDEI 634
+ L L++ + +I A++G NG+GKST ++ G P GD L G++I E
Sbjct: 23 LKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG--HPAYKILEGDILFKGESILDLEPEE 80
Query: 635 RKGLGV--CPQYDILFPELTVREHLEMFAVLKGVKEELLE-------SVVAEMVDEVGLA 685
R LG+ QY I P ++ + L + K + L E ++ E + VG+
Sbjct: 81 RAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMD 140
Query: 686 DK-----VNIVVRALSGG-MKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 739
VN SGG KR L +AL+ DS++ ILDE SG+D ++++ + I K
Sbjct: 141 PSFLSRNVN---EGFSGGEKKRNEILQMALL-DSELAILDETDSGLDIDALKIIAEGINK 196
Query: 740 IK-KGRIILLTTH 751
+ I+L TH
Sbjct: 197 LMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 8e-10
Identities = 60/228 (26%), Positives = 103/228 (45%), Gaps = 27/228 (11%)
Query: 1467 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT--- 1523
++ + K + G K A+ + V+ GEC G G NGAGK+T + ++SG YP
Sbjct: 4 MKGIVKTFGGVK------ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSG-VYPHGTW 56
Query: 1524 DGTAFIFGKDI--RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARI--KGVAEYRMD 1579
DG + G + + R I Q L+ L+V E++ L I G RM
Sbjct: 57 DGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPG---GRMA 113
Query: 1580 DVVMEKLVEFDLLKHAK-------KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGM 1632
M + +LL+ + +P GG ++ + +A A+ ++ILDEPS+ +
Sbjct: 114 YNAMYLRAK-NLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSL 172
Query: 1633 DPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQ 1680
+ ++I L + A + +H +NE +A+C I ++ GQ
Sbjct: 173 TEKETEILLDIIRDL--KAHGVACVYISHKLNEVKAVCDTICVIRDGQ 218
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 8e-10
Identities = 54/201 (26%), Positives = 85/201 (42%), Gaps = 60/201 (29%)
Query: 585 TLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD-----------------------AL 621
E ++ +LG NG GK+T + +L G + P GD
Sbjct: 95 IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154
Query: 622 VFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDE 681
++ I + K PQY L P+ V KG ELL+ V DE
Sbjct: 155 LYNGEIKV----VHK-----PQYVDLIPK-----------VFKGKVRELLKKV-----DE 189
Query: 682 VGLADKV-------NIV---VRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMR 731
G D+V NI+ + LSGG +++++ AL+ D+ DEPTS +D R
Sbjct: 190 RGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQ-R 248
Query: 732 LTW-QLIKKIKKGRIILLTTH 751
L +LI+++ +G+ +L+ H
Sbjct: 249 LNVARLIRELAEGKYVLVVEH 269
|
Length = 590 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 8e-10
Identities = 53/188 (28%), Positives = 84/188 (44%), Gaps = 19/188 (10%)
Query: 1489 LTFSVQAGECFGFLGTNGAGKTTTLSMISG-EEYPTDGTAFIF-GKDIRSDPKAARRLIG 1546
L V+ GE +G NG+GK+T + ++G E+Y G F GKD+ R G
Sbjct: 20 LNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79
Query: 1547 YCPQFDALLEYLTVQEHLELYARIKGVAEYR---------MDDVVMEKL----VEFDLLK 1593
F +E V L + V YR D++ EK+ + DLL
Sbjct: 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLT 139
Query: 1594 HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGK 1653
+ F SGG K++ + + +P + ILDE +G+D A + + + ++ L R GK
Sbjct: 140 RSVNVGF--SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSL--RDGK 195
Query: 1654 TAVILTTH 1661
+ I+ TH
Sbjct: 196 RSFIIVTH 203
|
Length = 248 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (148), Expect = 9e-10
Identities = 64/238 (26%), Positives = 107/238 (44%), Gaps = 39/238 (16%)
Query: 1482 AKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSM-------ISGEEYPTDGTAFIFGKDI 1534
K + ++ A +G G+GKTT L +SG Y G + G+ I
Sbjct: 33 GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRY--SGDVLLGGRSI 90
Query: 1535 RS--DPKAARRLIGYCPQ---------FDALLEYLTVQEHLELYAR--IKGVAEYRMDDV 1581
+ D RR +G Q D +L V+ H +L R +GVA+ R+ +V
Sbjct: 91 FNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLA--GVRAH-KLVPRKEFRGVAQARLTEV 147
Query: 1582 VMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMW 1641
+ V+ D L + F LSGG ++ L +A + +P +++LDEP++ +DP +
Sbjct: 148 GLWDAVK-DRLSDS---PFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIE 203
Query: 1642 EVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL-------RCIGSPQHLKT 1692
E I L+ R VI+ TH++ +A + R + G+L + SP+H +T
Sbjct: 204 EFIRSLADR---LTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKHAET 258
|
Length = 276 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 46/203 (22%), Positives = 95/203 (46%), Gaps = 33/203 (16%)
Query: 1485 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG-----EEYPTDGTAFIFGKDIRS--- 1536
A+ + ++ + +G +G GK+T L ++ +G + G+DI
Sbjct: 18 ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI 77
Query: 1537 DPKAARRLIGYCPQ----FDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL 1592
D R+ +G Q F +++ +++ R G+ D ++++VE L
Sbjct: 78 DVNQLRKRVGMVFQQPNPFP-----MSIYDNVAYGPRTHGIK----DKKKLDEIVEKSLK 128
Query: 1593 KHA---------KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEV 1643
A KK + LSGG +++L +A A+ +P ++++DEP++ +DPI+ + E+
Sbjct: 129 GAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEEL 188
Query: 1644 ISRLSTRQGKTAVILTTHSMNEA 1666
I L + +++ TH+M +A
Sbjct: 189 IQEL---KKDYTIVIVTHNMQQA 208
|
Length = 250 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 1e-09
Identities = 56/243 (23%), Positives = 111/243 (45%), Gaps = 35/243 (14%)
Query: 1483 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTL-------SMISGEEYPTDGTAFIFGKDIR 1535
K A++ + + + +G +G GK+T L +IS + +G + GK+I
Sbjct: 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVK--IEGEVLLDGKNIY 74
Query: 1536 S---DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL 1592
D R+ +G Q +++ +++ RI G+ D ++K+VE+ L
Sbjct: 75 DKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIK----DKKELDKIVEWALK 129
Query: 1593 KHA---------KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEV 1643
K A KK + LSGG +++L +A + P ++++DEP++ +DPI+ + ++
Sbjct: 130 KAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDL 189
Query: 1644 ISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVK 1703
+ L + +++ TH+M +A + + G L + + FLE + K
Sbjct: 190 MVELKK---EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI------FLEPQKK 240
Query: 1704 PTE 1706
TE
Sbjct: 241 ETE 243
|
Length = 251 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 1e-09
Identities = 55/241 (22%), Positives = 107/241 (44%), Gaps = 26/241 (10%)
Query: 1483 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG-----EEYPTDGTAFIFGKDIRS- 1536
K A+ +++ + +G +G GK+T + ++ + +G I G+DI
Sbjct: 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEP 84
Query: 1537 --DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKH 1594
D R+ +G Q +++ +++ RI G + +D VV L L
Sbjct: 85 DVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDE 143
Query: 1595 A----KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTR 1650
K P+ +LSGG +++L +A + P I++ DEP++ +DPI+ + ++I L
Sbjct: 144 TSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL--- 200
Query: 1651 QGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSV 1710
+ +++ TH+M +A + G + G+L FG ++ P E S+
Sbjct: 201 KKDYTIVIVTHNMQQAARISDYTGFFLMGEL----------IEFGQTRQIFHNPREKSTE 250
Query: 1711 D 1711
D
Sbjct: 251 D 251
|
Length = 258 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-09
Identities = 51/227 (22%), Positives = 101/227 (44%), Gaps = 47/227 (20%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1523
I+ +N+ YP R D V + ++F++ GE +G +G+GK+T ++++ P
Sbjct: 11 IVKFQNVTFAYP--TRPDTLV-LQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ 67
Query: 1524 DGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYL-----TVQEHLELYAR-IKGVAEYR 1577
G + GK I Q++ +YL V + L+AR ++ Y
Sbjct: 68 GGQVLLDGKPI--------------SQYEH--KYLHSKVSLVGQEPVLFARSLQDNIAYG 111
Query: 1578 MDDVVMEKLVEFDLLKHAKKPSFT-----------------LSGGNKRKLSVAIAMIGDP 1620
+ E + E HA SF LSGG K+++++A A+I +P
Sbjct: 112 LQSCSFECVKEAAQKAHAH--SFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNP 169
Query: 1621 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQ 1667
++ILDE ++ +D +++ + + + R+ V++ H ++ +
Sbjct: 170 QVLILDEATSALDAESEQQVQQALYDWPERR---TVLVIAHRLSTVE 213
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 1e-09
Identities = 56/203 (27%), Positives = 97/203 (47%), Gaps = 14/203 (6%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEIRK 636
V + Q +A++G GAGKST I++L + P +G L+ G +I T +R+
Sbjct: 350 GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRR 409
Query: 637 GLGVCPQYDILFPELTVREHLEMFAVLK--GVKEELLE-SVVAEMVDEV-GLADKVNIVV 692
+ V Q LF ++ +++ V + EE+ + A+ D + D + VV
Sbjct: 410 NIAVVFQDAGLFNR-SIEDNIR---VGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVV 465
Query: 693 ----RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILL 748
R LSGG +++L++ AL+ D ++ILDE TS +D + + ++ KGR +
Sbjct: 466 GERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFI 525
Query: 749 TTHSMDEAEELGDRIAIMANGSL 771
H + DRI + NG +
Sbjct: 526 IAHRLSTVRN-ADRILVFDNGRV 547
|
Length = 588 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-09
Identities = 52/242 (21%), Positives = 97/242 (40%), Gaps = 54/242 (22%)
Query: 1481 DAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTL-------SMISGEEYPTDGTAFIFGKD 1533
+K + + + E F+G +G GK+T L + + G I G D
Sbjct: 16 GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCK--VKGELDIDGID 73
Query: 1534 IRSD---------------------PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKG 1572
+ S PK+ + Y P+ L A+ K
Sbjct: 74 VYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGL-------------AKNK- 119
Query: 1573 VAEYRMDDVVMEKLVEF----DLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEP 1628
++D++V + L +L K +F LSGG +++L +A A+ P ++++DEP
Sbjct: 120 ---KKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEP 176
Query: 1629 STGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1688
+ +DP+A + +I L +I+ THSM +A+ + R+ G++ + Q
Sbjct: 177 CSALDPVATNVIENLIQELKKN---FTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQ 233
Query: 1689 HL 1690
+
Sbjct: 234 EI 235
|
Length = 251 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 39/207 (18%), Positives = 78/207 (37%), Gaps = 26/207 (12%)
Query: 1477 GKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG---EEYPTDGTAFIFGKD 1533
GK + + V+ GE LG G+G +T L ++ +G G
Sbjct: 14 GKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73
Query: 1534 IRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK 1593
+ + I Y + D LTV+E L+ R KG ++ V
Sbjct: 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKG------NEFVR---------- 117
Query: 1594 HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGK 1653
+SGG ++++S+A A++ ++ D + G+D + + I ++
Sbjct: 118 -------GISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKT 170
Query: 1654 TAVILTTHSMNEAQALCTRIGIMVGGQ 1680
T + + +E L ++ ++ G+
Sbjct: 171 TTFVSLYQASDEIYDLFDKVLVLYEGR 197
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 1e-09
Identities = 61/192 (31%), Positives = 97/192 (50%), Gaps = 20/192 (10%)
Query: 593 ALLGHNGAGKSTTISMLVGLIPP--TTGDALVFGKNITADMDEIRKGLGVCPQYDILFPE 650
AL+G +GAGK+T + +L G GD + G + + G C Q DI P+
Sbjct: 910 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG--FPKKQETFARISGYCEQNDIHSPQ 967
Query: 651 LTVREHLEMFAVL---KGV-KEELLESV--VAEMVDEVGLADKVNIV----VRALSGGMK 700
+TVRE L A L K V KEE + V V E+V+ L D IV V LS +
Sbjct: 968 VTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDA--IVGLPGVTGLSTEQR 1025
Query: 701 RKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK-IKKGRIILLTTH--SMDEAE 757
++L++ + L+ + ++ +DEPTSG+D + + + ++ + GR ++ T H S+D E
Sbjct: 1026 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1085
Query: 758 ELGDRIAIMANG 769
D + +M G
Sbjct: 1086 AF-DELLLMKRG 1096
|
Length = 1470 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 1e-09
Identities = 52/185 (28%), Positives = 88/185 (47%), Gaps = 17/185 (9%)
Query: 589 NQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEIRKGLGVCPQYDIL 647
+ + ++G GAGKST I L + G + G +I T ++++R L + PQ L
Sbjct: 34 GEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTL 93
Query: 648 FPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGI 707
F T+R +L+ F + EE+ ++ V E GL LS G ++ L L
Sbjct: 94 FSG-TIRSNLDPFD--EYSDEEIYGAL---RVSEGGLN---------LSQGQRQLLCLAR 138
Query: 708 ALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMA 767
AL+ +V++LDE T+ +D + L + I++ IL H + + D+I +M
Sbjct: 139 ALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDY-DKILVMD 197
Query: 768 NGSLK 772
G +K
Sbjct: 198 AGEVK 202
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-09
Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 27/163 (16%)
Query: 1489 LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYC 1548
+ ++ GE G+ G+GKT+ L +I GE P++G G+ I +
Sbjct: 56 INLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR------------ISFS 103
Query: 1549 PQFDALLEYLTVQEHLELYARIKGVA--EYRMDDVVMEKLVEFDLLKHAKKPS------- 1599
QF ++ T++E++ I GV+ EYR VV +E D+ K +K +
Sbjct: 104 SQFSWIMPG-TIKENI-----IFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGG 157
Query: 1600 FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1642
TLSGG + ++S+A A+ D + +LD P +D ++ ++E
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFE 200
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 2e-09
Identities = 62/263 (23%), Positives = 122/263 (46%), Gaps = 53/263 (20%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGL--IPPTT 617
I+++ L K + K + ++ T+ E ++L +LG +GAGKS + +L G+ PT+
Sbjct: 1 IEVKNLTKKFDGKE----VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTS 56
Query: 618 GDAL-----------------------VFGKNITA------DMDE-----IRKGLGVCPQ 643
G + V G + ++ + IRK + + Q
Sbjct: 57 GRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQ 116
Query: 644 YDI-LFPELTVREHLEMFAVLKGVKE---ELLESV--VAEMVDEVGLADKVNIVVRALSG 697
L+ + TV ++ VL+ ++E E E+V ++++ V L+ ++ + R LSG
Sbjct: 117 RTFALYGDDTVLDN-----VLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSG 171
Query: 698 GMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK--IKKGRIILLTTHSMDE 755
G K+++ L L + + + DEPT +DP + +L +++ G ++LT+H +
Sbjct: 172 GEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV 231
Query: 756 AEELGDRIAIMANGSLKCCGSSL 778
E+L D+ + NG +K G+
Sbjct: 232 IEDLSDKAIWLENGEIKEEGTPD 254
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 2e-09
Identities = 35/145 (24%), Positives = 75/145 (51%), Gaps = 21/145 (14%)
Query: 1569 RIKGV-AEYRMDDVVMEKLVEFDLLKHAK----KPSFTLSGGNKRKLSVAIAMIGDPPIV 1623
RI G + ++ ++V + L + L K + +LSGG +++L +A A+ +P ++
Sbjct: 118 RIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVL 177
Query: 1624 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL-- 1681
++DEP++ +DP++ R + E+I +L + K +++ TH+M +A + + G+L
Sbjct: 178 LMDEPTSALDPVSTRKIEELILKL---KEKYTIVIVTHNMQQAARVSDQTAFFYMGELVE 234
Query: 1682 -----RCIGSPQHLKT------RFG 1695
+ +P +T +FG
Sbjct: 235 CNDTNKMFSNPDDQRTLDYITGKFG 259
|
Length = 259 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 2e-09
Identities = 56/231 (24%), Positives = 105/231 (45%), Gaps = 29/231 (12%)
Query: 1482 AKVAVHSLTFSVQAGECFGFLGTNGAGKTTTL-------SMISGEEYPTDGTAFIFGKDI 1534
A+H ++ + + +G +G GK+T L +I G +G + G++I
Sbjct: 18 DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGAR--VEGEILLDGENI 75
Query: 1535 ---RSDPKAARRLIGYCPQ----FDALLEYLTVQEHLELYARIKGVAEYR-MDDVVMEKL 1586
D RR +G Q F ++ E++ R+ GV + + + V L
Sbjct: 76 YDPHVDVVELRRRVGMVFQKPNPFPK-----SIFENVAYGLRVNGVKDKAYLAERVERSL 130
Query: 1587 VEFDLLKHAK----KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1642
L K + + LSGG +++L +A A+ +P ++++DEP++ +DPIA + + E
Sbjct: 131 RHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEE 190
Query: 1643 VISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693
+I L R +I+ TH+M +A + G+L +G + + TR
Sbjct: 191 LIHELKARY---TIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTR 238
|
Length = 253 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 2e-09
Identities = 56/216 (25%), Positives = 112/216 (51%), Gaps = 12/216 (5%)
Query: 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTG 618
++++ + K Y G + + L + + + + L+G +G GKST + M+ GL T+G
Sbjct: 3 GLKLQAVRKSYD---GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSG 59
Query: 619 DALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEM 678
+ + G+ + +++ + + + Q L+P ++VRE++ ++G+ + +E VAE
Sbjct: 60 EIWIGGRVVN-ELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEA 118
Query: 679 VDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP---YSMRLTWQ 735
+ L ++ R LSGG ++++++G A++ + V + DEP S +D MRL
Sbjct: 119 ARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLE-- 176
Query: 736 LIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANG 769
I+++ + L TH EA L DR+ +M G
Sbjct: 177 -IQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGG 211
|
Length = 356 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-09
Identities = 58/226 (25%), Positives = 106/226 (46%), Gaps = 25/226 (11%)
Query: 1467 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT--- 1523
++N+ K + G K A+ +++ V+AGE G NGAGK+T + ++SG YP
Sbjct: 8 MKNITKTFGGVK------ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG-VYPHGTY 60
Query: 1524 DGTAFIFGKDIR----SDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMD 1579
+G G++++ D + A I + Q AL++ L+V E++ L I MD
Sbjct: 61 EGEIIFEGEELQASNIRDTERAGIAIIH--QELALVKELSVLENIFLGNEI--TPGGIMD 116
Query: 1580 DVVM-----EKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP 1634
M + L + L + P L G ++ + +A A+ ++ILDEP+ +
Sbjct: 117 YDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTE 176
Query: 1635 IAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQ 1680
+ ++I L + A I +H +NE +A+ I ++ G+
Sbjct: 177 SETAVLLDIIRDL--KAHGIACIYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 2e-09
Identities = 50/211 (23%), Positives = 92/211 (43%), Gaps = 22/211 (10%)
Query: 1479 RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTT-TLSMISGEEYPTDGTAFIFGKDIRSD 1537
D + +++F V+AGE G +G GAGK+T L++ E +G I G DI +
Sbjct: 17 APDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE-AEEGKIEIDGIDISTI 75
Query: 1538 P-KAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAK 1596
P + R + PQ D L T++ +L+ + EY D+ + L
Sbjct: 76 PLEDLRSSLTIIPQ-DPTLFSGTIRSNLDPF------DEYS-DEEIYGAL-------RVS 120
Query: 1597 KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAV 1656
+ LS G ++ L +A A++ P +++LDE + +D + + I T + +
Sbjct: 121 EGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFT---NSTI 177
Query: 1657 ILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1687
+ H + +I +M G+++ P
Sbjct: 178 LTIAHRLRTI-IDYDKILVMDAGEVKEYDHP 207
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 2e-09
Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 22/221 (9%)
Query: 1486 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLI 1545
++ +TFS+ G +G G GK++ LS + E +G + G +
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGS------------V 701
Query: 1546 GYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSF----- 1600
Y PQ A ++ +++E++ L+ + Y+ L + ++L +
Sbjct: 702 AYVPQ-QAWIQNDSLRENI-LFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGV 759
Query: 1601 TLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP-IAKRFMWEVISRLSTRQGKTAVILT 1659
LSGG K+++S+A A+ + I + D+P + +D + K VI + KT IL
Sbjct: 760 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTR-ILV 818
Query: 1660 THSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1700
TH ++ + I +M GG++ +GS Q L R G F E
Sbjct: 819 THGISYLPQVDVII-VMSGGKISEMGSYQELLQRDGAFAEF 858
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (144), Expect = 3e-09
Identities = 49/210 (23%), Positives = 99/210 (47%), Gaps = 17/210 (8%)
Query: 1485 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG-----EEYPTDGTAFIFGKDI---RS 1536
A+H ++ + E +G +G GK+T L ++ E G G++I +
Sbjct: 19 ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM 78
Query: 1537 DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRM-DDVVMEKLVEFDLLKHA 1595
D R+ +G Q + +V +++ +I GV + + D V E L + + K
Sbjct: 79 DLVELRKEVGMVFQQPTPFPF-SVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET 137
Query: 1596 K----KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQ 1651
K + + SGG ++++ +A A+ P +V+LDEP++ +DPI+ + E + L +
Sbjct: 138 KDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMEL---K 194
Query: 1652 GKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
+ I+ TH++ +A + + ++ G L
Sbjct: 195 HQYTFIMVTHNLQQAGRISDQTAFLMNGDL 224
|
Length = 251 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 3e-09
Identities = 58/221 (26%), Positives = 93/221 (42%), Gaps = 36/221 (16%)
Query: 1463 AIIYLRNLRKVYPGGK---RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGE 1519
++ +RNL K + R AV ++F+++ G+ +G NG+GK+T M++G
Sbjct: 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGM 62
Query: 1520 EYPTDGTAFIFG------------KDIR---SDPKAA---RRLIGYCPQFDALLEYLTVQ 1561
PT G I K IR DP + R IG L L +
Sbjct: 63 IEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIG-----QILDFPLRLN 117
Query: 1562 EHLELYARIKGVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIAMIGDP 1620
LE R K + E L LL HA L+ G K+++++A A+I P
Sbjct: 118 TDLEPEQRRKQ---------IFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRP 168
Query: 1621 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1661
I+I DE +D + + ++ L +QG + + +T H
Sbjct: 169 KIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQH 209
|
Length = 267 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 3e-09
Identities = 43/182 (23%), Positives = 94/182 (51%), Gaps = 19/182 (10%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 637
A+N++ + E +I+ ++G NG+GKST +++ G+ P G + G +A + I G
Sbjct: 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG---SAALIAISSG 95
Query: 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSG 697
L +LT E++E+ ++ G+ +E ++ ++ E+++ + + V+ S
Sbjct: 96 LN---------GQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSS 146
Query: 698 GMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI----KKGRIILLTTHSM 753
GMK +L I++ + ++++DE S D T + + K+ ++G+ I +HS+
Sbjct: 147 GMKSRLGFAISVHINPDILVIDEALSVGD---QTFTKKCLDKMNEFKEQGKTIFFISHSL 203
Query: 754 DE 755
+
Sbjct: 204 SQ 205
|
Length = 549 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 3e-09
Identities = 61/232 (26%), Positives = 107/232 (46%), Gaps = 32/232 (13%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+Q+ L K Y +G C V+ LY ++L ++G +G+GKST + L G + P G
Sbjct: 4 LQVSGLSKSYGGGKG-CRDVS---FDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGT 59
Query: 620 ALVFGKN-----ITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKG--VKEELLE 672
A ++ + + R+ L + + F R+ L M V G + E L+
Sbjct: 60 ATYIMRSGAELELYQLSEAERRRLM---RTEWGFVHQNPRDGLRM-RVSAGANIGERLMA 115
Query: 673 -------SVVAEMVD---EVGL-ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEP 721
++ A D EV + +++ + RA SGGM+++L + L+ ++V +DEP
Sbjct: 116 IGARHYGNIRATAQDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEP 175
Query: 722 TSGMD----PYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANG 769
T G+D + L L++ + II+ TH + A L R+ +M G
Sbjct: 176 TGGLDVSVQARLLDLLRGLVRDLGLAVIIV--THDLGVARLLAQRLLVMQQG 225
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 3e-09
Identities = 55/202 (27%), Positives = 101/202 (50%), Gaps = 13/202 (6%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD--MDEIR 635
A++ L +Y +++AL+G NGAGKST + +L G+ G L GK +T +
Sbjct: 19 ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQE 78
Query: 636 KGLGVCPQYDILFPELTVREHL----EMFAVLKGVKEELLESVVAEMVDEVGLADKVNIV 691
G+G+ Q L P+LT+ E++ E + + + + +++ + L + +
Sbjct: 79 AGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKL 138
Query: 692 VRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK----KGRIIL 747
V LS G ++ + + L +SKV+I+DEPT D + T L + I+ +GR I+
Sbjct: 139 VGELSIGEQQMVEIAKVLSFESKVIIMDEPT---DALTDTETESLFRVIRELKSQGRGIV 195
Query: 748 LTTHSMDEAEELGDRIAIMANG 769
+H + E E+ D + + +G
Sbjct: 196 YISHRLKEIFEICDDVTVFRDG 217
|
Length = 501 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 3e-09
Identities = 45/205 (21%), Positives = 88/205 (42%), Gaps = 17/205 (8%)
Query: 581 SLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGLG 639
S ++ E IL L+G NGAGKST ++ + G+ +G G+ + A E+ +
Sbjct: 19 SGEVRAGE--ILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRA 75
Query: 640 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGM 699
Q + V +L + K E L ++ + L DK+ LSGG
Sbjct: 76 YLSQQQTPPFAMPVWHYLTLHQPDKTRTELL-----NDVAGALALDDKLGRSTNQLSGGE 130
Query: 700 KRKLSLGIALIG-------DSKVVILDEPTSGMDPYSMRLTWQLIKKI-KKGRIILLTTH 751
+++ L ++ ++++LDEP + +D +L+ + ++G I++++H
Sbjct: 131 WQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSH 190
Query: 752 SMDEAEELGDRIAIMANGSLKCCGS 776
++ R ++ G L G
Sbjct: 191 DLNHTLRHAHRAWLLKRGKLLASGR 215
|
Length = 248 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 3e-09
Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 44/176 (25%)
Query: 579 VNSLQL----TLYENQILALLGHNGAGKSTTISMLVG-LIP-------PTTGDALV---- 622
VN +L T +++ +LG NG GKST + +L G L P P + D ++
Sbjct: 86 VNGFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFR 145
Query: 623 -------FGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESV- 674
F K ++ + K PQY L P V+KG ELL+ V
Sbjct: 146 GTELQNYFKKLYEGELRAVHK-----PQYVDLIP-----------KVVKGKVGELLKKVD 189
Query: 675 ----VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 726
E+V+ +GL + ++ V LSGG +++++ AL+ D+ V DEP+S +D
Sbjct: 190 ERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLD 245
|
Length = 591 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 3e-09
Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 43/205 (20%)
Query: 588 ENQILALLGHNGAGKSTTISMLVGLIPPTTG--------DALV-----------FGKNIT 628
E Q+L L+G NG GKST + +L G + P G D ++ F K +
Sbjct: 25 EGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLE 84
Query: 629 ADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESV-----VAEMVDEVG 683
D+ I K PQY L P +KG ELL+ + E+VD++
Sbjct: 85 GDVKVIVK-----PQYVDLIP-----------KAVKGKVGELLKKKDERGKLDELVDQLE 128
Query: 684 LADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTW-QLIKK-IK 741
L ++ + LSGG +++++ AL D+ DEP+S +D RL +LI++ +
Sbjct: 129 LRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQ-RLNAARLIRELAE 187
Query: 742 KGRIILLTTHSMDEAEELGDRIAIM 766
+L+ H + + L D I +
Sbjct: 188 DDNYVLVVEHDLAVLDYLSDYIHCL 212
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 4e-09
Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 17/188 (9%)
Query: 1488 SLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE-YP-TDGTAFIFGKDIRSDP--KAARR 1543
+ +V+ GE +G NG+GK+T I+G Y T GT G+D+ + AR
Sbjct: 18 GVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77
Query: 1544 LIGYCPQFDALLEYLTVQEHLE--LYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFT 1601
+ Q+ + ++ E L L AR E +D + KL++ L
Sbjct: 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLK-AKLALLGMDEEF 136
Query: 1602 L--------SGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGK 1653
L SGG K++ + + +P + ILDE +G+D A + + E I+RL R+
Sbjct: 137 LNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRL--REPD 194
Query: 1654 TAVILTTH 1661
+ ++ TH
Sbjct: 195 RSFLIITH 202
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 4e-09
Identities = 60/254 (23%), Positives = 112/254 (44%), Gaps = 39/254 (15%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
I N+R Y D+ + +L ++ GE G +G +G+GK+T ++ P
Sbjct: 456 ITFENIRFRY----APDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH 511
Query: 1525 GTAFIFGKDI-RSDPKAARRLIGYCPQFDALLEYLTVQ-----------EHLELYARIKG 1572
G + G D+ +DP RR +G Q + L EH+ A++ G
Sbjct: 512 GQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAG 571
Query: 1573 VAEYRM------DDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILD 1626
++ + V EK LSGG ++++++A A++G+P I+I D
Sbjct: 572 AHDFISELPQGYNTEVGEKGA-------------NLSGGQRQRIAIARALVGNPRILIFD 618
Query: 1627 EPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS 1686
E ++ +D ++ + + + +G+T VI+ H ++ +A C RI ++ GQ+ G
Sbjct: 619 EATSALDYESEALIMRNMREIC--RGRT-VIIIAHRLSTVRA-CDRIIVLEKGQIAESGR 674
Query: 1687 PQHLKTRFGNFLEL 1700
+ L G + L
Sbjct: 675 HEELLALQGLYARL 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 4e-09
Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 31/191 (16%)
Query: 1474 YPGGKRS--DAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFG 1531
YP K++ D K+ V GE G LG NG GKTT + +++G P +G+
Sbjct: 345 YPDLKKTYGDFKLEVEEGEIYD--GEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----E 398
Query: 1532 KDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV----MEKLV 1587
+D++ + Y PQ+ + TV++ L R + Y ++V +E L+
Sbjct: 399 EDLK---------VSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLL 449
Query: 1588 EFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM-WEVISR 1646
E +P LSGG +++++A A+ + + +LDEPS +D + +R + +VI R
Sbjct: 450 E--------RPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLD-VEQRIIVAKVIRR 500
Query: 1647 LSTRQGKTAVI 1657
KTA++
Sbjct: 501 FIENNEKTALV 511
|
Length = 591 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 4e-09
Identities = 50/188 (26%), Positives = 75/188 (39%), Gaps = 51/188 (27%)
Query: 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY 1521
NA+ + NL K + D +L ++AGE +G NG GKTT L + GE
Sbjct: 318 NALE-VENLTKGF------DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE 370
Query: 1522 PTDGTAFIFGKDIRSDPKAARRLIGYCPQ-----FD---ALLEYL---TVQEHLELYAR- 1569
P GT ++ A IGY Q F+ L +++ + E R
Sbjct: 371 PDSGT-------VKWSENAN---IGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRG 420
Query: 1570 IKGVAEYRM----DDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVIL 1625
G R+ DD+ KK LSGG K ++ M+ P ++++
Sbjct: 421 TLG----RLLFSQDDI--------------KKSVKVLSGGEKGRMLFGKLMMQKPNVLVM 462
Query: 1626 DEPSTGMD 1633
DEP+ MD
Sbjct: 463 DEPTNHMD 470
|
Length = 530 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (142), Expect = 5e-09
Identities = 59/238 (24%), Positives = 107/238 (44%), Gaps = 27/238 (11%)
Query: 1481 DAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMIS-----GEEYPTDGTAFIFGKDI- 1534
D + + ++ + + +G +G GK+T L ++ E +G F ++I
Sbjct: 18 DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIY 77
Query: 1535 --RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKG-VAEYRMDDVVMEKLVEFDL 1591
R + RR + L ++V +++ +I G + +DD+V L + DL
Sbjct: 78 ERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADL 136
Query: 1592 LKHAK----KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRL 1647
K K + LSGG +++L +A A+ P ++++DEP G+DPIA + +I L
Sbjct: 137 WDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSL 196
Query: 1648 STRQGKTAVILTTHSMNEAQALC----------TRIGIMV--GGQLRCIGSPQHLKTR 1693
R T VI+ +H++++ L RIG +V G + SP +TR
Sbjct: 197 RLRSELTMVIV-SHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIFNSPHDSRTR 253
|
Length = 261 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 6e-09
Identities = 68/247 (27%), Positives = 122/247 (49%), Gaps = 27/247 (10%)
Query: 1453 NRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKV-AVHSLTFSVQAGECFGFLGTNGAGKTT 1511
L+ +A++ +++LR + D V AV+ L FS++AGE G +G +G+GK+
Sbjct: 1 TVPLAQQQADALLDVKDLRVTF---STPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQ 57
Query: 1512 TLSMISG---EEYPTDGTAFIFGKDIRSDP-KAARRL----IGYCPQ--FDALLEYLTVQ 1561
T + G G+A G++I + P K +L I Q +L Y+ V
Sbjct: 58 TAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVG 117
Query: 1562 EHL-ELYARIKGVAE-------YRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVA 1613
E L E+ KG+++ RM D V K+ E K K SGG ++++ +A
Sbjct: 118 EQLMEVLMLHKGMSKAEAFEESVRMLDAV--KMPE--ARKRMKMYPHEFSGGMRQRVMIA 173
Query: 1614 IAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRI 1673
+A++ P ++I DEP+T +D + + +++ L R+ TA+I+ TH + +C ++
Sbjct: 174 MALLCRPKLLIADEPTTALDVTVQAQIMTLLNELK-REFNTAIIMITHDLGVVAGICDKV 232
Query: 1674 GIMVGGQ 1680
+M G+
Sbjct: 233 LVMYAGR 239
|
Length = 330 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 7e-09
Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 13/162 (8%)
Query: 574 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMD 632
G +L + + + A++G NG GKST + L L+ P G + G++I
Sbjct: 18 GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASK 77
Query: 633 EIRKGLGVCPQY-----DILFPELTVR---EHLEMFAVLKGVKEELLESVVAEMVDEVGL 684
E+ + +G+ Q DI EL R H +F + KE+ E V + + G+
Sbjct: 78 EVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWR--KED--EEAVTKAMQATGI 133
Query: 685 ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 726
+ V LSGG +++ + + L ++ +++LDEPT+ +D
Sbjct: 134 THLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 7e-09
Identities = 53/202 (26%), Positives = 99/202 (49%), Gaps = 23/202 (11%)
Query: 586 LYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT------------ADMDE 633
L++ +IL + G GA ++ + L G+ + G + GK I A + E
Sbjct: 271 LHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTE 330
Query: 634 IRKGLGVCPQYDILFPEL--TVREHLEMFAVLKGVKEELLESVVAEMVDEVGL---ADKV 688
R+ G+ DI F L +R + +L + ++S ++D + + +
Sbjct: 331 ERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSR---MKSDTQWVIDSMRVKTPGHRT 387
Query: 689 NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-KKGRIIL 747
I +LSGG ++K+ +G L+ ++++LDEPT G+D + +QLI ++ KK + I+
Sbjct: 388 QI--GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGII 445
Query: 748 LTTHSMDEAEELGDRIAIMANG 769
+ + M E + DRI +M+NG
Sbjct: 446 IISSEMPELLGITDRILVMSNG 467
|
Length = 491 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 8e-09
Identities = 69/264 (26%), Positives = 118/264 (44%), Gaps = 30/264 (11%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI----TADMDE 633
AV + L+ + L+L+G +G+GKSTT L+ L+ G+ + G+ I +
Sbjct: 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQA 398
Query: 634 IRKGLGVCPQ--YDILFPELTV----REHLEMFAVLKGVKEELLESVVAEMVDEVGL-AD 686
+R+ + Q Y L P TV E L + +L G + + VA +++ VGL +
Sbjct: 399 LRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPG---KAAAARVAWLLERVGLLPE 455
Query: 687 KVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-----K 741
SGG ++++ + AL + KV+I DE S +D S+R Q+I +
Sbjct: 456 HAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALD-VSIRG--QIINLLLDLQRD 512
Query: 742 KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCG--SSLFLKHQYGVGYTLTLVKSAPDA 799
G L +H M E + R+A+M G + G ++F Q+ YT L+ + P
Sbjct: 513 FGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQH--PYTRKLMAAVP-- 568
Query: 800 SAAADIVYRHIPSALCVSEVGTEI 823
AD + L ++ + I
Sbjct: 569 --VADPSRQRPQRVLLSDDLPSNI 590
|
Length = 623 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 9e-09
Identities = 54/203 (26%), Positives = 99/203 (48%), Gaps = 18/203 (8%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
+ RN+ YPG R A+ S++ ++ GE +G +G+GK+T +++I P
Sbjct: 331 VEFRNVTFRYPGRDRP----ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDS 386
Query: 1525 GTAFIFGKDIRSDPKAA--RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV 1582
G + G D+ D A RR + Q D +L T+ ++ Y R + ++ +
Sbjct: 387 GQILLDGHDLA-DYTLASLRRQVALVSQ-DVVLFNDTIANNIA-YGRTEQADRAEIERAL 443
Query: 1583 -MEKLVEF--DLLKHAKKP----SFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPI 1635
+F L P LSGG +++L++A A++ D PI+ILDE ++ +D
Sbjct: 444 AAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNE 503
Query: 1636 AKRFMWEVISRLSTRQGKTAVIL 1658
++R + + RL QG+T +++
Sbjct: 504 SERLVQAALERL--MQGRTTLVI 524
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 9e-09
Identities = 42/163 (25%), Positives = 81/163 (49%), Gaps = 27/163 (16%)
Query: 1489 LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYC 1548
++F ++ G+ G+ G+GK++ L MI GE P++G G+ I +
Sbjct: 445 ISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR------------ISFS 492
Query: 1549 PQFDALLEYLTVQEHLELYARIKGVA--EYRMDDVVMEKLVEFDLLKHAKKPS------- 1599
PQ ++ T+++++ I G++ EYR V+ +E D+ +K
Sbjct: 493 PQTSWIMPG-TIKDNI-----IFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGG 546
Query: 1600 FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1642
TLSGG + ++S+A A+ D + +LD P T +D + ++ ++E
Sbjct: 547 ITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFE 589
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 1e-08
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 10/169 (5%)
Query: 1496 GECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALL 1555
GE LG +G+GK+T L+ ++G + T I + R K + G+ Q D L
Sbjct: 94 GEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANN-RKPTKQILKRTGFVTQDDILY 152
Query: 1556 EYLTVQEHLELYARIKGVAEYRMDD--VVMEKLV-EFDLLKHAKK---PSFT--LSGGNK 1607
+LTV+E L + ++ + +V E ++ E L K SF +SGG +
Sbjct: 153 PHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGER 212
Query: 1608 RKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAV 1656
+++S+A M+ +P ++ILDEP++G+D A + + L+ ++GKT V
Sbjct: 213 KRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLA-QKGKTIV 260
|
Length = 659 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-08
Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 19/143 (13%)
Query: 585 TLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQY 644
+Y+ +++ +LG NG GK+T + +L G+I P G +++ PQY
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDLKVSYK---------PQY 409
Query: 645 DILFPELTVREHLEMFAVLKGVKEELLES-VVAEMVDEVGLADKVNIVVRALSGGMKRKL 703
+ TV + L ++ S E+V + L D + V LSGG +++
Sbjct: 410 ISPDYDGTVEDLLR-----SAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRV 464
Query: 704 SLGIALIGDSKVVILDEPTSGMD 726
++ AL ++ + +LDEP++ +D
Sbjct: 465 AIAAALSREADLYLLDEPSAYLD 487
|
Length = 591 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 1e-08
Identities = 52/173 (30%), Positives = 92/173 (53%), Gaps = 25/173 (14%)
Query: 582 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEIRKGLGV 640
L ++ Q + LLG G+GKST +S L+ L+ T G+ + G + + + RK GV
Sbjct: 1238 LSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGV 1296
Query: 641 CPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGL-------ADKVNIVVR 693
PQ +F T R++L+ + + EE+ + + +EVGL DK++ V+
Sbjct: 1297 IPQKVFIFSG-TFRKNLDPYE--QWSDEEIWK-----VAEEVGLKSVIEQFPDKLDFVLV 1348
Query: 694 ----ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK 742
LS G K+ + L +++ +K+++LDEP++ +DP +T Q+I+K K
Sbjct: 1349 DGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDP----VTLQIIRKTLK 1397
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 1e-08
Identities = 57/178 (32%), Positives = 85/178 (47%), Gaps = 21/178 (11%)
Query: 564 KLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD-ALV 622
K+ KV A G+ ++S++L L + LLG NGAGKST I +L G + P +G+ L
Sbjct: 314 KMEKVSA-GYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLA 372
Query: 623 FGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEV 682
G I+ G Q + L + + +HL A + LE + + +
Sbjct: 373 KG---------IKLGYFAQHQLEFLRADESPLQHLARLA------PQELEQKLRDYLGGF 417
Query: 683 GL-ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMR--LTWQLI 737
G DKV R SGG K +L L + + +++LDEPT+ +D MR LT LI
Sbjct: 418 GFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD-LDMRQALTEALI 474
|
Length = 638 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 1e-08
Identities = 64/278 (23%), Positives = 126/278 (45%), Gaps = 48/278 (17%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPT--- 616
+ IR L + T +G AV+ + +TL E +I L+G +G+GKS + G+
Sbjct: 4 LDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRV 63
Query: 617 TGDALVFGKNITADMD-------EIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEE 669
T D + F D+D E RK +G +++ + +E + V +
Sbjct: 64 TADRMRFD-----DIDLLRLSPRERRKLVG----HNV---SMIFQEPQSCLDPSERVGRQ 111
Query: 670 LLESVVA-------------------EMVDEVGLADKVNIVVR---ALSGGMKRKLSLGI 707
L++++ A E++ VG+ D +I+ L+ G +K+ + I
Sbjct: 112 LIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAI 171
Query: 708 ALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAI 765
AL +++I DEPT+ M+P + ++L+ ++ + ILL +H + + D+I +
Sbjct: 172 ALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINV 231
Query: 766 MANG-SLKCCGSSLFLKHQYGVGYTLTLVKSAPDASAA 802
+ G +++ S + + YT L+++ PD +A
Sbjct: 232 LYCGQTVESAPSEELVTMPHH-PYTQALIRAIPDFGSA 268
|
Length = 330 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 2e-08
Identities = 47/196 (23%), Positives = 86/196 (43%), Gaps = 48/196 (24%)
Query: 1468 RNLRKVYP---GGKRSDAKV-AVHSLTFSVQAGECFGFLGTNGAGKTT---TLSMISGEE 1520
+L+K YP G + + V A+ ++F+++ G+ +G +G GK+T L+MI E
Sbjct: 9 IDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMI---E 65
Query: 1521 YPTDGTAFIFGKDIRSDPKAARRL---------------------IGYCPQFDALLEYLT 1559
PT G + G+D+ A++L +G L E L
Sbjct: 66 TPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVG-----QILEEPLL 120
Query: 1560 VQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK--HAKKPSFTLSGGNKRKLSVAIAMI 1617
+ L R + +M K+ L+ H + SGG ++++++A A++
Sbjct: 121 INTSLSAAERREKALA------MMAKVG----LRPEHYDRYPHMFSGGQRQRIAIARALM 170
Query: 1618 GDPPIVILDEPSTGMD 1633
DP +V+ DEP + +D
Sbjct: 171 LDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 2e-08
Identities = 47/198 (23%), Positives = 105/198 (53%), Gaps = 7/198 (3%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 637
++ L + ++ + ++G GAGKS+ ++ L ++ G ++ ++ + ++R+
Sbjct: 1252 LHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRV 1311
Query: 638 LGVCPQYDILFPELTVREHLEMFAVLK--GVKEELLESVVAEMVDE--VGLADKVNIVVR 693
L + PQ +LF TVR +++ F+ + E L + + +++D GL +V+
Sbjct: 1312 LSIIPQSPVLFSG-TVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGE 1370
Query: 694 ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSM 753
S G ++ LSL AL+ SK+++LDE T+ +D + L + I++ K +L+ H +
Sbjct: 1371 NFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRL 1430
Query: 754 DEAEELGDRIAIMANGSL 771
+ + D+I ++++G +
Sbjct: 1431 NTIIDC-DKILVLSSGQV 1447
|
Length = 1495 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 3e-08
Identities = 51/243 (20%), Positives = 106/243 (43%), Gaps = 21/243 (8%)
Query: 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG--EE 1520
I +R+L+ + +V + + + +G +G+GK+T L + + E
Sbjct: 2 NKIEIRDLKVSF-----GQVEV-LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIEL 55
Query: 1521 YP---TDGTAFIFGKDI-RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEY 1576
YP G ++ G+DI + D RR + Q + L++ E++ L ++ + +
Sbjct: 56 YPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKS 115
Query: 1577 R--MDDVVMEKLVEFDLLKHAKK----PSFTLSGGNKRKLSVAIAMIGDPPIVILDEPST 1630
+ + + V L + L K P+ LSGG +++L +A A+ P +++ DEP+
Sbjct: 116 KKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTA 175
Query: 1631 GMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
+DP + + L + ++L TH +A + + + GQ+ G + +
Sbjct: 176 NLDPENTAKIESLFLEL---KKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232
Query: 1691 KTR 1693
T
Sbjct: 233 FTN 235
|
Length = 250 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 3e-08
Identities = 62/247 (25%), Positives = 105/247 (42%), Gaps = 59/247 (23%)
Query: 1473 VYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTL-------SMISGEEYPTDG 1525
VY G + V++ SV A +G +G GK+T L I DG
Sbjct: 53 VYYGDDHALKGVSMDIPEKSVTA-----LIGPSGCGKSTFLRCLNRMNDRIKAAR--IDG 105
Query: 1526 TAFIFGKDIRSD---------------------PKAARRLIGYCPQFDALLEYLTVQEHL 1564
+ + G+DI D PK+ R I Y P+ +
Sbjct: 106 SVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDIN-------T 158
Query: 1565 ELYARIKGVAEYRMDDVVMEKLVEFDLLKHA---------KKPSFTLSGGNKRKLSVAIA 1615
L AR+ G R D ++LVE L + A + LSGG +++L +A
Sbjct: 159 GLLARLLG----RDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARC 214
Query: 1616 MIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGI 1675
+ DP ++++DEP++ +DPIA + ++I L+ + V++ TH+M +A + + +
Sbjct: 215 LAVDPEVILMDEPASALDPIATSKIEDLIEELAE---EYTVVVVTHNMQQAARISDQTAV 271
Query: 1676 -MVGGQL 1681
+ GG+L
Sbjct: 272 FLTGGEL 278
|
Length = 305 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 3e-08
Identities = 68/244 (27%), Positives = 112/244 (45%), Gaps = 46/244 (18%)
Query: 1479 RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-D 1537
R D + + ++ ++ GE +G +G+GK+T L ++ G E P G+ F G+D+ D
Sbjct: 462 RPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLD 521
Query: 1538 PKAARRLIGYCPQ---------FDALL--EYLTVQEHLELYARIKGVAE------YRMDD 1580
+A RR +G Q F+ + LT+ E E AR+ G+AE M
Sbjct: 522 VQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEA-ARMAGLAEDIRAMPMGMHT 580
Query: 1581 VVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1640
V+ E TLSGG +++L +A A++ P I++ DE ++ +D + +
Sbjct: 581 VISEG-------------GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIV 627
Query: 1641 WEVISRLS-TRQGKTAVI---LTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN 1696
E + RL TR VI L+T N RI ++ G++ G+ L R G
Sbjct: 628 SESLERLKVTR----IVIAHRLST-IRN-----ADRIYVLDAGRVVQQGTYDELMAREGL 677
Query: 1697 FLEL 1700
F +L
Sbjct: 678 FAQL 681
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 3e-08
Identities = 53/210 (25%), Positives = 99/210 (47%), Gaps = 28/210 (13%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 636
A+ ++ TL Q+L + G G+GKST +S++ + GD +T +D R
Sbjct: 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRS 389
Query: 637 GLGVCPQYDILF------------PELTVREHLEMFAVLKGVKEELL---ESVVAEMVDE 681
L V Q LF P+ T ++ +E A L V +++L + E V E
Sbjct: 390 RLAVVSQTPFLFSDTVANNIALGRPDAT-QQEIEHVARLASVHDDILRLPQGYDTE-VGE 447
Query: 682 VGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK 741
G+ LSGG K+++S+ AL+ +++++ILD+ S +D + +++
Sbjct: 448 RGVM---------LSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG 498
Query: 742 KGRIILLTTHSMDEAEELGDRIAIMANGSL 771
+GR ++++ H + E I +M +G +
Sbjct: 499 EGRTVIISAHRLSALTE-ASEILVMQHGHI 527
|
Length = 569 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 3e-08
Identities = 51/161 (31%), Positives = 73/161 (45%), Gaps = 20/161 (12%)
Query: 1474 YPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKD 1533
YPGG + +L F + +G NG GK+T L +ISGE P+ GT F
Sbjct: 518 YPGGP-----LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVF----- 567
Query: 1534 IRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK 1593
RS K R + D L L+ L + GV E ++ L F +
Sbjct: 568 -RS-AK-VRMAVFSQHHVDGL--DLSSNPLLYMMRCFPGVPEQKL----RAHLGSFGVTG 618
Query: 1594 H-AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMD 1633
+ A +P +TLSGG K +++ A P I++LDEPS +D
Sbjct: 619 NLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLD 659
|
Length = 718 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 4e-08
Identities = 51/216 (23%), Positives = 98/216 (45%), Gaps = 18/216 (8%)
Query: 1485 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1544
A+ ++ G+ G +G NG+GK+T ++I G PT G + + + +
Sbjct: 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVG-------KVDRNGEVSVIA 91
Query: 1545 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEF-DLLKHAKKPSFTLS 1603
I L LT E++E G + + K++EF +L + +P S
Sbjct: 92 IS-----AGLSGQLTGIENIEFKMLCMGFKRKEIKAM-TPKIIEFSELGEFIYQPVKKYS 145
Query: 1604 GGNKRKLSVAIAMIGDPPIVILDEP-STGMDPIAKRFMWEVISRLSTRQGKTAVILTTHS 1662
G + KL +I + +P I+++DE S G A++ + ++ Q KT + +H+
Sbjct: 146 SGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYE--FKEQNKT-IFFVSHN 202
Query: 1663 MNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFL 1698
+ + + CT+I + GG+L+ G + ++ FL
Sbjct: 203 LGQVRQFCTKIAWIEGGKLKDYGELDDVLPKYEAFL 238
|
Length = 264 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 4e-08
Identities = 49/202 (24%), Positives = 93/202 (46%), Gaps = 22/202 (10%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
+ LRN+R Y D V + +++ GE +G NG+GK+T +++G P
Sbjct: 323 LELRNVRFAYQ-----DNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQS 377
Query: 1525 GTAFIFGKDIRSD-PKAARRLIGYCPQ----FDALLEYLTVQEHLELYARIKGVAEYRMD 1579
G + GK + ++ + R+L FD LL E A + + ++ +
Sbjct: 378 GEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLG-------PEGKASPQLIEKW-LQ 429
Query: 1580 DVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF 1639
+ + L + + LS G K++L++ +A++ + I++LDE + DP +R
Sbjct: 430 RLELAHKTS---LNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRRE 486
Query: 1640 MWEVISRLSTRQGKTAVILTTH 1661
++V+ L QGKT + +H
Sbjct: 487 FYQVLLPLLKEQGKT-IFAISH 507
|
Length = 546 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 4e-08
Identities = 60/245 (24%), Positives = 107/245 (43%), Gaps = 58/245 (23%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+ + L K+Y +G C V+ LY ++L ++G +G+GK+T + + G + P G
Sbjct: 7 LSVSGLSKLYGPGKG-CRDVS---FDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAG- 61
Query: 620 ALVFGKNITADMDE-----------------IRKGLGVCPQYDILFPELTVREHLEMFAV 662
+T M + +R G Q R+ L M V
Sbjct: 62 ------TVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNP--------RDGLRM-QV 106
Query: 663 LKG--VKEELLE-------SVVAEMVD-----EVGLADKVNIVVRALSGGMKRKLSLGIA 708
G + E L+ ++ AE D E+ L D+++ + R SGGM+++L +
Sbjct: 107 SAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDL-DRIDDLPRTFSGGMQQRLQIARN 165
Query: 709 LIGDSKVVILDEPTSGMD----PYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIA 764
L+ ++V +DEPT G+D + L L++++ +I+ TH + A L DR+
Sbjct: 166 LVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIV--THDLAVARLLADRLM 223
Query: 765 IMANG 769
+M G
Sbjct: 224 VMKQG 228
|
Length = 258 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 5e-08
Identities = 56/237 (23%), Positives = 110/237 (46%), Gaps = 44/237 (18%)
Query: 561 QIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDA 620
+R L K+Y ++G C V+ LY ++L ++G +G+GK+T ++ L + P G+
Sbjct: 8 SVRGLTKLYGPRKG-CRDVS---FDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEV 63
Query: 621 LVFGKNIT----ADMDE------IRKGLGVCPQYDILFPELTVREHLEMFAVLKG--VKE 668
++ + E +R G Q+ P R+ L M V G + E
Sbjct: 64 HYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQH----P----RDGLRM-QVSAGGNIGE 114
Query: 669 EL----------LESVVAEMVDEVGL-ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVI 717
L + + + ++ V + A +++ + SGGM+++L + L+ ++V
Sbjct: 115 RLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVF 174
Query: 718 LDEPTSGMDPYSMR-----LTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANG 769
+DEPT G+D S++ L L++++ G +++ TH + A L R+ +M G
Sbjct: 175 MDEPTGGLD-VSVQARLLDLLRGLVREL--GLAVVIVTHDLAVARLLAHRLLVMKQG 228
|
Length = 258 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 5e-08
Identities = 44/175 (25%), Positives = 88/175 (50%), Gaps = 15/175 (8%)
Query: 582 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVC 641
L +T + I + G NG GKS+ + M+ G++ P++G+ ++ KN +++ I K
Sbjct: 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGN--IYYKNC--NINNIAKPYCTY 74
Query: 642 PQYDI-LFPELTVREHLEMFAVLKGVKEELLESV--VAEMVDEVGLADKVNIVVRALSGG 698
+++ L E+TV E+L+ ++ E+ S + + L D ++ +LS G
Sbjct: 75 IGHNLGLKLEMTVFENLKFWS-------EIYNSAETLYAAIHYFKLHDLLDEKCYSLSSG 127
Query: 699 MKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLI-KKIKKGRIILLTTHS 752
M++ +++ + S + +LDE + + + L LI K G I+LL++H
Sbjct: 128 MQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHL 182
|
Length = 195 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 6e-08
Identities = 44/195 (22%), Positives = 87/195 (44%), Gaps = 4/195 (2%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
I L+++ + S+ A+ + + G+ +G NG GK+T + G P +
Sbjct: 338 IELKDVHMNPKAPEGSEG-FALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQE 396
Query: 1525 GTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVME 1584
G + G + +D + R + D L + +A + +Y + + +
Sbjct: 397 GEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQY-LQRLEIA 455
Query: 1585 KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVI 1644
V+ + + + LS G +++L++ A + D PI++ DE + DP KRF +E +
Sbjct: 456 DKVKIEDGGFS--TTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEEL 513
Query: 1645 SRLSTRQGKTAVILT 1659
RQGKT +I++
Sbjct: 514 LPDLKRQGKTIIIIS 528
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 7e-08
Identities = 55/206 (26%), Positives = 93/206 (45%), Gaps = 32/206 (15%)
Query: 590 QILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD---MDEIRK----GLGVCP 642
++ +LG G+G ST + + T G + IT D +EI+K +
Sbjct: 88 ELTVVLGRPGSGCSTLLKTIAS---NTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNA 144
Query: 643 QYDILFPELTVREHLEMFAVLKGV--------KEELLESVVAEMVDEVGLA----DKV-N 689
+ D+ FP LTV E L+ A K +EE + + + GL+ KV N
Sbjct: 145 ETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGN 204
Query: 690 IVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLT 749
VR +SGG ++++S+ A +G +K+ D T G+D + + I+ +K IL T
Sbjct: 205 DFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSAT---ALEFIRALKTSANILDT 261
Query: 750 THSM------DEAEELGDRIAIMANG 769
T + +A EL D++ ++ G
Sbjct: 262 TPLVAIYQCSQDAYELFDKVIVLYEG 287
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 7e-08
Identities = 67/256 (26%), Positives = 116/256 (45%), Gaps = 41/256 (16%)
Query: 1432 QSSSESDTLDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTF 1491
++S + DI + ER +V G + + +N +Y G + KV L+
Sbjct: 9 ETSKSAPAETATRDIYLPPERKKVSGGGKPHVVA--KNF-SIYYGEFEAVKKVNADILSK 65
Query: 1492 SVQAGECFGFLGTNGAGKTTTLSMIS--GEEYP---TDGTAFIFGKDIR---SDPKAARR 1543
V A +G +G GK+T L I+ + P T G G+DI +D R+
Sbjct: 66 YVTA-----IIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRK 120
Query: 1544 LIGYCPQ----FDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHA---- 1595
IG Q F ++ +++ R+ G+ D +E++VE L K A
Sbjct: 121 KIGMVFQKPNPFPK-----SIFDNIAYGPRLHGIN----DKKQLEEIVEKSLRKAALWDE 171
Query: 1596 -----KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTR 1650
K + LSGG +++L VA + +P I++LDEP++ +DP A + ++I L
Sbjct: 172 VSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQEL--- 228
Query: 1651 QGKTAVILTTHSMNEA 1666
+G +++ TH+M +A
Sbjct: 229 RGSYTIMIVTHNMQQA 244
|
Length = 286 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (133), Expect = 7e-08
Identities = 50/195 (25%), Positives = 95/195 (48%), Gaps = 21/195 (10%)
Query: 1502 LGTNGAGKTTTL-------SMISGEEYPTDGTAFIFGKDIRS---DPKAARRLIGYCPQF 1551
+G +G GK+T L ++SG +G + ++I S D R+ +G Q
Sbjct: 36 IGPSGCGKSTLLRALNRMNDIVSGARL--EGAVLLDNENIYSPNLDVVNLRKRVGMVFQQ 93
Query: 1552 DALLEYLTVQEHLELYARIKGV-AEYRMDDVVMEKLVEFDLLKHAK----KPSFTLSGGN 1606
++ +++ R+ G A+ R+D+VV + L + L K K LSGG
Sbjct: 94 PNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQ 152
Query: 1607 KRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEA 1666
+++L +A + +P ++++DEP + +DP++ + E++ L +Q T I+ TH+M +A
Sbjct: 153 QQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL--KQNYTIAIV-THNMQQA 209
Query: 1667 QALCTRIGIMVGGQL 1681
G ++ G L
Sbjct: 210 ARASDWTGFLLTGDL 224
|
Length = 251 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 8e-08
Identities = 53/214 (24%), Positives = 95/214 (44%), Gaps = 22/214 (10%)
Query: 1488 SLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIR--SDPKAARRLI 1545
L+ V+AGE +G NGAGK+T L+ ++G P G+ G+ + S + AR
Sbjct: 14 PLSAEVRAGEILHLVGPNGAGKSTLLARMAG-LLPGSGSIQFAGQPLEAWSAAELARHR- 71
Query: 1546 GYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKK---PSFTL 1602
Y Q + V ++L L+ + + + ++ E L K L
Sbjct: 72 AYLSQQQTPPFAMPVFQYLTLH-QPDKTRTEAVASAL-NEVAE--ALGLDDKLGRSVNQL 127
Query: 1603 SGGN-KR-KLSVAIAMIGDPPI------VILDEPSTGMDPIAKRFMWEVISRLSTRQGKT 1654
SGG +R +L+ + + P I ++LDEP +D + + ++S L +QG
Sbjct: 128 SGGEWQRVRLAAVVLQV-WPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELC-QQG-I 184
Query: 1655 AVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1688
AV++++H +N R+ ++ G+L G
Sbjct: 185 AVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRD 218
|
Length = 248 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 8e-08
Identities = 44/187 (23%), Positives = 91/187 (48%), Gaps = 17/187 (9%)
Query: 1482 AKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKA 1540
+ ++ ++F++ G+ +G +GAGK+T L ++ G+ I G+DIR ++
Sbjct: 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQS 334
Query: 1541 ARRLIGYCPQ----FDALLEYL-----TVQEHLELYARIKGVAEYRMDDVVMEKLVEFDL 1591
RR IG PQ F+ + Y E+ A + + ++ L E
Sbjct: 335 LRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIH----DFIQSLPEGYD 390
Query: 1592 LKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQ 1651
++ LSGG K+++++A ++ +PPI+ILDE ++ +D ++ + + +S
Sbjct: 391 TGVGER-GLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS--A 447
Query: 1652 GKTAVIL 1658
G+T +++
Sbjct: 448 GRTTLVI 454
|
Length = 497 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 9e-08
Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 7/93 (7%)
Query: 1578 MDDVVMEKLVEFDLLKHAK----KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMD 1633
+D++V L + L K K + TLSGG +++L +A A+ P I+++DEP++ +D
Sbjct: 136 LDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALD 195
Query: 1634 PIAKRFMWEVISRLSTRQGKTAVILTTHSMNEA 1666
PI+ + E + L +I+ TH+M +A
Sbjct: 196 PISTMQLEETMFELKK---NYTIIIVTHNMQQA 225
|
Length = 267 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 9e-08
Identities = 35/143 (24%), Positives = 74/143 (51%), Gaps = 19/143 (13%)
Query: 585 TLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQY 644
+YE +++ ++G NG GK+T +L G++ P G+ + ++ K PQY
Sbjct: 361 EIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGE-------VDPELKISYK-----PQY 408
Query: 645 DILFPELTVREHLEMFAVLKGVKEELLESVV-AEMVDEVGLADKVNIVVRALSGGMKRKL 703
+ TV + +L+ + ++L S +E++ + L ++ V+ LSGG +++
Sbjct: 409 IKPDYDGTVED------LLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRV 462
Query: 704 SLGIALIGDSKVVILDEPTSGMD 726
++ L D+ + +LDEP++ +D
Sbjct: 463 AIAACLSRDADLYLLDEPSAHLD 485
|
Length = 590 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 1e-07
Identities = 60/256 (23%), Positives = 117/256 (45%), Gaps = 22/256 (8%)
Query: 1449 QVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAG 1508
+ L+ +I +++ YP R D V + LTF++ GE +G +G+G
Sbjct: 463 NIPLTGTLAPLNLEGLIEFQDVSFSYP--NRPDVPV-LKGLTFTLHPGEVVALVGPSGSG 519
Query: 1509 KTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELY 1567
K+T +++ PT G + G + D R + Q + +L +V+E++ Y
Sbjct: 520 KSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQ-EPVLFSGSVRENI-AY 577
Query: 1568 -------ARIKGVA-EYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1619
I A D +ME +D + +K S LSGG K+++++A A++
Sbjct: 578 GLTDTPDEEIMAAAKAANAHDFIMEFPNGYDT-EVGEKGSQ-LSGGQKQRIAIARALVRK 635
Query: 1620 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGG 1679
P ++ILDE ++ +D ++ + E +R +T V+L H ++ + +I ++ G
Sbjct: 636 PRVLILDEATSALDAECEQLLQE----SRSRASRT-VLLIAHRLSTVER-ADQILVLKKG 689
Query: 1680 QLRCIGSPQHLKTRFG 1695
+ +G+ + L G
Sbjct: 690 SVVEMGTHKQLMEDQG 705
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 1e-07
Identities = 62/263 (23%), Positives = 123/263 (46%), Gaps = 37/263 (14%)
Query: 548 LDMKQQEVDGRC--------IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNG 599
LD++Q++ +G+ I+ R + Y K A+ ++ + + +AL+G +G
Sbjct: 322 LDLEQEKDEGKRVIERAKGDIEFRNVTFTYPGK--EVPALRNINFKIPAGKTVALVGRSG 379
Query: 600 AGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGLGVCPQYDILFPELTV----- 653
+GKST ++L G+ L+ G ++ + +R + + Q LF + T+
Sbjct: 380 SGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFND-TIANNIA 438
Query: 654 --------REHLEMFAVLKGVKE--ELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKL 703
RE +E A + + +++ + ++ E G+ LSGG ++++
Sbjct: 439 YARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVL---------LSGGQRQRI 489
Query: 704 SLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRI 763
++ AL+ DS ++ILDE TS +D S R + +++K R L+ H + E+ D I
Sbjct: 490 AIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEK-ADEI 548
Query: 764 AIMANGSLKCCGSSLFLKHQYGV 786
++ +G + G+ L Q GV
Sbjct: 549 LVVEDGEIVERGTHAELLAQNGV 571
|
Length = 582 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 54/214 (25%), Positives = 97/214 (45%), Gaps = 18/214 (8%)
Query: 1488 SLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIR--SDPKAARRLI 1545
L+ V+AGE +G NGAGK+T L+ ++G G+ G+ + S + AR
Sbjct: 17 PLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGSGSIQFAGQPLEAWSATELARHR- 74
Query: 1546 GYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGG 1605
Y Q + V +L L+ K E ++DV L D L + LSGG
Sbjct: 75 AYLSQQQTPPFAMPVWHYLTLHQPDKTRTE-LLNDVA-GALALDDKLGRSTN---QLSGG 129
Query: 1606 NKRKLSVAIAMIGDPP-------IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVIL 1658
+++ +A ++ P +++LDEP +D + + ++S L +QG A+++
Sbjct: 130 EWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALC-QQGL-AIVM 187
Query: 1659 TTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692
++H +N R ++ G+L G + + T
Sbjct: 188 SSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLT 221
|
Length = 248 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 3e-07
Identities = 43/199 (21%), Positives = 99/199 (49%), Gaps = 11/199 (5%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMD------ 632
+ ++ L++ + + L G +G+GKST + L P G LV + D+
Sbjct: 27 LRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPRE 86
Query: 633 --EIR-KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKV- 688
E+R +G Q+ + P ++ + + + +GV E+ + A+++ + L +++
Sbjct: 87 VLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLW 146
Query: 689 NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIIL 747
++ SGG ++++++ I D +++LDEPT+ +D + + +LI++ K +G ++
Sbjct: 147 SLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALV 206
Query: 748 LTTHSMDEAEELGDRIAIM 766
H + E + DR+ +
Sbjct: 207 GIFHDEEVREAVADRLLDV 225
|
Length = 235 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 3e-07
Identities = 71/285 (24%), Positives = 122/285 (42%), Gaps = 64/285 (22%)
Query: 1449 QVERNRVLSGSVDNAIIYLRNLRKVYP--GG--KRSDAKV-AVHSLTFSVQAGECFGFLG 1503
+E++ V+ G I+ +RNL +P G R +V AV ++F + GE +G
Sbjct: 301 PIEQDTVVDG---EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVG 357
Query: 1504 TNGAGKTTT----LSMISGEEYPTDGTAFIFG----------------KDIR---SDPKA 1540
+G+GK+TT L ++ + G IF +DI+ DP A
Sbjct: 358 ESGSGKSTTGRALLRLVE-----SQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYA 412
Query: 1541 A---RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK--HA 1595
+ R+ +G +++E L V L A VA L+E L HA
Sbjct: 413 SLDPRQTVGD-----SIMEPLRVHGLLPGKAAAARVAW----------LLERVGLLPEHA 457
Query: 1596 KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTA 1655
+ SGG ++++ +A A+ +P ++I DE + +D + + ++ L G A
Sbjct: 458 WRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFG-IA 516
Query: 1656 VILTTHSMNEAQALCTRIGIMVGGQLRCIG-------SPQHLKTR 1693
+ +H M + + R+ +M GQ+ IG +PQH TR
Sbjct: 517 YLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTR 561
|
Length = 623 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 3e-07
Identities = 53/224 (23%), Positives = 100/224 (44%), Gaps = 38/224 (16%)
Query: 1485 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIR-SDPKAA-- 1541
++ ++F + GE G G GA +T + + G + GT + GK I + A
Sbjct: 263 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAIN 322
Query: 1542 ---------RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYR-----MDDVVMEKLV 1587
RR G D + + I + Y+ +D+ M+
Sbjct: 323 HGFALVTEERRSTGIYAYLD-----------IGFNSLISNIRNYKNKVGLLDNSRMKSDT 371
Query: 1588 EF--DLLKHAKKPSF-----TLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1640
++ D ++ K P +LSGGN++K+ + ++ P I++LDEP+ G+D AK +
Sbjct: 372 QWVIDSMR-VKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEI 430
Query: 1641 WEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCI 1684
+++I+ L+ ++ K +I+ + M E + RI +M G + I
Sbjct: 431 YQLIAELA-KKDK-GIIIISSEMPELLGITDRILVMSNGLVAGI 472
|
Length = 491 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 3e-07
Identities = 44/163 (26%), Positives = 78/163 (47%), Gaps = 19/163 (11%)
Query: 1496 GECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALL 1555
GE G +G NG GKTT +++G P +G ++ + K I Y PQ+
Sbjct: 365 GEVIGIVGPNGIGKTTFAKLLAGVLKPDEG-------EVDPELK-----ISYKPQYIKPD 412
Query: 1556 EYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIA 1615
TV++ L G + Y+ + +++ L LL K LSGG +++++A
Sbjct: 413 YDGTVEDLLRSITDDLGSSYYKSE--IIKPLQLERLL---DKNVKDLSGGELQRVAIAAC 467
Query: 1616 MIGDPPIVILDEPSTGMDPIAKRFM-WEVISRLSTRQGKTAVI 1657
+ D + +LDEPS +D + +R + I R++ + TA++
Sbjct: 468 LSRDADLYLLDEPSAHLD-VEQRLAVAKAIRRIAEEREATALV 509
|
Length = 590 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 3e-07
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 1602 LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1661
L+ G +K+ +AIA+ P ++I DEP+ M+P + ++ ++SRL+ T ++L +H
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSN-TTILLISH 217
Query: 1662 SMNEAQALCTRIGIMVGGQ 1680
+ +I ++ GQ
Sbjct: 218 DLQMISQWADKINVLYCGQ 236
|
Length = 330 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 3e-07
Identities = 54/193 (27%), Positives = 82/193 (42%), Gaps = 38/193 (19%)
Query: 560 IQIRKLHKVYATKRG------NCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLI 613
+Q L K Y KRG A++ + TL + LA++G +G GKST +L +
Sbjct: 6 LQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIE 65
Query: 614 PPTTGDALVFGKNITADMDEIRKGLGVCPQ------YDILFPELTVREHLEMFAVLKGVK 667
PT G+ G+++ E +K L Q Y L P V + LE
Sbjct: 66 TPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILE--------- 116
Query: 668 EELL----------ESVVAEMVDEVGL----ADKVNIVVRALSGGMKRKLSLGIALIGDS 713
E LL M+ +VGL D+ SGG ++++++ AL+ D
Sbjct: 117 EPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYP---HMFSGGQRQRIAIARALMLDP 173
Query: 714 KVVILDEPTSGMD 726
VV+ DEP S +D
Sbjct: 174 DVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 4e-07
Identities = 70/255 (27%), Positives = 111/255 (43%), Gaps = 44/255 (17%)
Query: 1468 RNLRKVY---PGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
RNL K + G R AV L+F+++ G+ +G NG+GK+T M++G PT
Sbjct: 8 RNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS 67
Query: 1525 GTAFI------FG------KDIR---SDPKAA---RRLIGYCPQFDALLEY-LTVQEHLE 1565
G I FG + IR DP + R+ I +L++ L + LE
Sbjct: 68 GELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRIS------QILDFPLRLNTDLE 121
Query: 1566 LYARIKGVAEYRMDDVVMEKLVEFDLLK-HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1624
R K + +E L + LL HA L+ G K++L +A A+I P ++I
Sbjct: 122 PEQREKQI---------IETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVII 172
Query: 1625 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH-SMNEA---QALCTRIGIMV--G 1678
DE +D + + ++ L +QG + + +T H M + Q L G +V G
Sbjct: 173 ADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232
Query: 1679 GQLRCIGSPQHLKTR 1693
+ SP H T+
Sbjct: 233 STADVLASPLHELTK 247
|
Length = 267 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 4e-07
Identities = 62/224 (27%), Positives = 105/224 (46%), Gaps = 22/224 (9%)
Query: 1478 KRSDAKVAV-HSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS 1536
K ++ AV +++FS+ G+ G LG G+GK+T LS T+G I G S
Sbjct: 11 KYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNS 69
Query: 1537 DP-KAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLV-------- 1587
P + R+ G PQ + T +++L+ Y + +++ + V K V
Sbjct: 70 VPLQKWRKAFGVIPQ-KVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQL 128
Query: 1588 EFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISR- 1646
+F L+ LS G+K+ + +A +++ I++LDEPS +DPI ++VI +
Sbjct: 129 DFVLVDGG----CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPIT----YQVIRKT 180
Query: 1647 LSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
L VIL+ H + EA C R ++ ++R S Q L
Sbjct: 181 LKQAFADCTVILSEHRI-EAMLECQRFLVIEENKVRQYDSIQKL 223
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 4e-07
Identities = 54/245 (22%), Positives = 123/245 (50%), Gaps = 25/245 (10%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP---PTTGDALVF-GKNITADMDE 633
AV+ + ++ + +++ ++G +G+GKS + ++GLI + L F G+++ ++
Sbjct: 22 AVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK 81
Query: 634 IRKGLGVCPQYDILF--------PELTV-REHLEMFAVLKGVKEELLESVVAEMVDEVGL 684
R+ L V + ++F P TV + +E V +G ++ +++++VG+
Sbjct: 82 ERRNL-VGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGI 140
Query: 685 AD---KVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI- 740
D ++++ LSGGM +++ + +A+ K++I DEPT+ +D + + Q+I+ +
Sbjct: 141 PDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALD---VTIQAQIIELLL 197
Query: 741 ----KKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKSA 796
K+ ++L TH + E +I +M G + G + + YT L+++
Sbjct: 198 ELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPRHPYTQALLRAL 257
Query: 797 PDASA 801
P+ +
Sbjct: 258 PEFAQ 262
|
Length = 326 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 5e-07
Identities = 51/229 (22%), Positives = 88/229 (38%), Gaps = 23/229 (10%)
Query: 1481 DAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGE---EYPTDGTAFIFGKDIRSD 1537
+ + L+ ++ G LG NGAGK+T L ++G+ G + +
Sbjct: 12 RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGE 71
Query: 1538 PKAA------RRLIGYCPQFDALLEYLTVQEHLEL----YARIKGVAEYRMDDVVMEKLV 1587
P AA RL PQ + +E + L +AR G +R ++ + L
Sbjct: 72 PLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALA 131
Query: 1588 EFDLLKHAKKPSFTLSGGNKRKLSVAIAM---------IGDPPIVILDEPSTGMDPIAKR 1638
+ TLSGG ++ A + P ++LDEP+ +D +
Sbjct: 132 LAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQH 191
Query: 1639 FMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1687
+ + + RL+ R V+ H N A RI ++ G + G+P
Sbjct: 192 RLLDTVRRLA-RDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAP 239
|
Length = 272 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 6e-07
Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 15/220 (6%)
Query: 1467 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1526
+ N+ K +PG K A+ ++ V+ +G NGAGK+T L + G G+
Sbjct: 1 MSNISKSFPGVK------ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGS 54
Query: 1527 AFIFGKDI--RSDPKAARRLIGYCPQFDALLEYLTVQEHLEL--YARIKG--VAEYRMDD 1580
GK+I +S +A I Q L+ +V +++ L Y KG V + +M
Sbjct: 55 ILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPT-KGMFVDQDKMYR 113
Query: 1581 VVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1640
E D+ + TLS + + +A A + IVI+DEP++ + +
Sbjct: 114 DTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHL 173
Query: 1641 WEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQ 1680
+ +I +L R ++ +H M E LC I I+ GQ
Sbjct: 174 FTIIRKLKER--GCGIVYISHKMEEIFQLCDEITILRDGQ 211
|
Length = 491 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 6e-07
Identities = 50/201 (24%), Positives = 94/201 (46%), Gaps = 12/201 (5%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEIRKG 637
V + Q +A++G GAGK+T I++L + PT G L+ G +I T + +RK
Sbjct: 351 VFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKS 410
Query: 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVN---IVV-- 692
+ Q LF ++RE++ + EE+ E+ A + + + N +V
Sbjct: 411 IATVFQDAGLF-NRSIRENIRL-GREGATDEEVYEAAKAAAAHDF-ILKRSNGYDTLVGE 467
Query: 693 --RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTT 750
LSGG +++L++ A++ ++ +++LDE TS +D + I ++K R +
Sbjct: 468 RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIA 527
Query: 751 HSMDEAEELGDRIAIMANGSL 771
H + D + + G L
Sbjct: 528 HRLSTVRN-ADLVLFLDQGRL 547
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 7e-07
Identities = 58/215 (26%), Positives = 102/215 (47%), Gaps = 38/215 (17%)
Query: 1472 KVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTL-------SMISGEEYPTD 1524
KV+ GG A V VH + A + F+G +G GK+T L +I G + +
Sbjct: 27 KVFYGGFL--ALVDVH---LKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAK--VE 79
Query: 1525 GTAFIFGKDIRSDPK----AARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDD 1580
G ++I D + RR +G Q ++ E++ R G Y+ +
Sbjct: 80 GRLLYRDRNI-YDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YKGN- 133
Query: 1581 VVMEKLVEFDLLKHA---------KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTG 1631
+++LVE L + A K+ LSGG +++L +A A+ P ++++DEP +
Sbjct: 134 --LDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSA 191
Query: 1632 MDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEA 1666
+DPI+ R + E+ L ++ T +I+ TH+M +A
Sbjct: 192 LDPISTRQVEELC--LELKEQYT-IIMVTHNMQQA 223
|
Length = 274 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 7e-07
Identities = 61/258 (23%), Positives = 115/258 (44%), Gaps = 32/258 (12%)
Query: 1461 DNAIIYLRNLRKVYPGGKR-----------SDAKVAVHSLTFSVQAGECFGFLGTNGAGK 1509
+I + +K +P G + + + L+FSV+ G+ G LG G+GK
Sbjct: 1199 TVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGK 1258
Query: 1510 TTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYA 1568
+T LS + T+G I G S + R+ G PQ + T +++L+ Y
Sbjct: 1259 STLLSALL-RLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE 1316
Query: 1569 RIKGVAEYRM-DDVVMEKLVE-------FDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDP 1620
+ +++ ++V ++ ++E F L+ + LS G+K+ + +A +++
Sbjct: 1317 QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGG----YVLSNGHKQLMCLARSILSKA 1372
Query: 1621 PIVILDEPSTGMDPIAKRFMWEVISR-LSTRQGKTAVILTTHSMNEAQALCTRIGIMVGG 1679
I++LDEPS +DP+ ++I + L VIL+ H + EA C + ++ G
Sbjct: 1373 KILLLDEPSAHLDPVT----LQIIRKTLKQSFSNCTVILSEHRV-EALLECQQFLVIEGS 1427
Query: 1680 QLRCIGSPQHLKTRFGNF 1697
++ S Q L F
Sbjct: 1428 SVKQYDSIQKLLNETSLF 1445
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 7e-07
Identities = 38/173 (21%), Positives = 79/173 (45%), Gaps = 38/173 (21%)
Query: 1491 FSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDI------RSDPKAARRL 1544
++ E +G NGAGK+T + +++GE DG I+ +D+ + P+
Sbjct: 24 LHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGR-IIYEQDLIVARLQQDPPRNVEGT 82
Query: 1545 IGYCPQFDALLEYLTVQ-EHLELY-------------------ARIKGVAEY----RMDD 1580
+ +D + E + Q E+L+ Y A+++ ++ ++++
Sbjct: 83 V-----YDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLEN 137
Query: 1581 VVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMD 1633
+ E L + L +LSGG RK ++ A++ +P +++LDEP+ +D
Sbjct: 138 RINEVLAQLGL--DPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188
|
Length = 635 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 9e-07
Identities = 66/281 (23%), Positives = 120/281 (42%), Gaps = 62/281 (22%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+ IR L + T G AV+ + +TL E +I L+G +G+GKS + G+ T D
Sbjct: 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGV----TKD 59
Query: 620 ALVFGKNITAD---MDEIRKGLGVCPQYDILFPELTVRE-------HLEMF-----AVL- 663
+TAD D+I D+L L+ RE ++ M + L
Sbjct: 60 NW----RVTADRMRFDDI----------DLL--RLSPRERRKLVGHNVSMIFQEPQSCLD 103
Query: 664 --KGVKEELLESV-------------------VAEMVDEVGLADKVNIVVR---ALSGGM 699
+ V +L++++ E++ VG+ D + + L+ G
Sbjct: 104 PSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGE 163
Query: 700 KRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAE 757
+K+ + IAL +++I DEPT+ M+P + ++L+ ++ + ILL +H +
Sbjct: 164 CQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLS 223
Query: 758 ELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKSAPD 798
+ D+I ++ G S L YT L+++ PD
Sbjct: 224 QWADKINVLYCGQTVETAPSKELVTTPHHPYTQALIRAIPD 264
|
Length = 330 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-06
Identities = 56/232 (24%), Positives = 100/232 (43%), Gaps = 28/232 (12%)
Query: 1482 AKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP----TDGTAFIFGKDIRSD 1537
A+ VH ++ ++Q G +G +G+GK+ T + G T G + GK +
Sbjct: 15 AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPV--A 72
Query: 1538 PKAAR-RLIGYCPQ-----FDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDL 1591
P A R R I Q F+ L T+ H G D + L L
Sbjct: 73 PCALRGRKIATIMQNPRSAFNPLH---TMHTHARETCLALGKP--ADDATLTAALEAVGL 127
Query: 1592 LKHAKKPS---FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLS 1648
A+ F +SGG +++ +A+A++ + P +I DEP+T +D +A+ + +++ +
Sbjct: 128 ENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIV 187
Query: 1649 TRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS-------PQHLKTR 1693
++ ++L TH M L + +M G++ G P+H TR
Sbjct: 188 QKRA-LGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAVTR 238
|
Length = 254 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 1e-06
Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 28/210 (13%)
Query: 536 LDACEPVVEAISLDMKQQEVDGRCIQIRKLHKVYATKRG-------NCCAVNSLQLTLYE 588
L++ EP + + L + + + +L + ++G + V ++ TL
Sbjct: 257 LNS-EPSGDPVPLPEPASPL----LDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRP 311
Query: 589 NQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI----TADMDEIRKGLGVCPQ- 643
+ L L+G +G+GKSTT L+ LI + G+ G+ + + +R + V Q
Sbjct: 312 GETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQD 370
Query: 644 -YDILFPELTVR----EHLEM-FAVLKGVKEELLESVVAEMVDEVGL-ADKVNIVVRALS 696
L P L V E L + L + E + V+A M +EVGL + + S
Sbjct: 371 PNSSLNPRLNVLQIIEEGLRVHQPTLSAAQRE--QQVIAVM-EEVGLDPETRHRYPAEFS 427
Query: 697 GGMKRKLSLGIALIGDSKVVILDEPTSGMD 726
GG ++++++ ALI ++ILDEPTS +D
Sbjct: 428 GGQRQRIAIARALILKPSLIILDEPTSSLD 457
|
Length = 529 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 2e-06
Identities = 60/198 (30%), Positives = 100/198 (50%), Gaps = 30/198 (15%)
Query: 1503 GTNGAGKTTTLSMISGEEYPTDG-------TAFIFGKDIRSDPKAARRLIGYCPQFDA-L 1554
G +GAGKT+ ++ ISG P G F K I P+ +R IGY Q DA L
Sbjct: 31 GRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPE--KRRIGYVFQ-DARL 87
Query: 1555 LEYLTVQEHLELYARIKGVAEYR---MDDVVMEKLVEFD-LLKHAKKPSFTLSGGNKRKL 1610
+ V+ +L Y G+A+ D +V L+ + LL + P +LSGG K++
Sbjct: 88 FPHYKVRGNL-RY----GMAKSMVAQFDKIV--ALLGIEPLLD--RYPG-SLSGGEKQR- 136
Query: 1611 SVAI--AMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQA 1668
VAI A++ P ++++DEP +D KR + + RL+ R+ ++ +HS++E
Sbjct: 137 -VAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLA-REINIPILYVSHSLDEILR 194
Query: 1669 LCTRIGIMVGGQLRCIGS 1686
L R+ ++ G+++ G
Sbjct: 195 LADRVVVLEQGKVKAFGP 212
|
Length = 352 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-06
Identities = 51/196 (26%), Positives = 85/196 (43%), Gaps = 29/196 (14%)
Query: 1486 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP----TDGTAFIFGKDIRSDPKAA 1541
+ L S+ GE +G NG+GK+T +I+G +P +G G+ I
Sbjct: 23 LKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG--HPAYKILEGDILFKGESILDLEPEE 80
Query: 1542 RRLIGYCPQFDALLEYLTV--QEHLELY--ARIKGVAEYRMD-----DVVMEKLVEFDLL 1592
R +G F +E V + L L ++ K +D +++ EKL +
Sbjct: 81 RAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGM- 139
Query: 1593 KHAKKPSFT-------LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVIS 1645
PSF SGG K++ + + D + ILDE +G+D A + + E I+
Sbjct: 140 ----DPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGIN 195
Query: 1646 RLSTRQGKTAVILTTH 1661
+L T + ++IL TH
Sbjct: 196 KLMTSE--NSIILITH 209
|
Length = 252 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 26/168 (15%)
Query: 1503 GTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQE 1562
G NG GK++ L MI+G P+ G + +I + K IG+ LE +TV E
Sbjct: 33 GANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGH--NLGLKLE-MTVFE 89
Query: 1563 HLELYARIKGVAE--------YRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAI 1614
+L+ ++ I AE +++ D++ EK ++LS G ++ +++A
Sbjct: 90 NLKFWSEIYNSAETLYAAIHYFKLHDLLDEKC-------------YSLSSGMQKIVAIAR 136
Query: 1615 AMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHS 1662
+ + +LDE T + + + +I + G V+L++H
Sbjct: 137 LIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGG--IVLLSSHL 182
|
Length = 195 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 2e-06
Identities = 43/187 (22%), Positives = 88/187 (47%), Gaps = 10/187 (5%)
Query: 592 LALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGLGVCPQYDILFPE 650
+A++G +GAGKST + +L +G + G++I +R+ +G+ PQ +LF
Sbjct: 292 VAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLF-- 349
Query: 651 LTVREHLEMFAVLKGVKEELLESVVAEMVDEV------GLADKVNIVVRALSGGMKRKLS 704
+ + EE+ + A + + G V LSGG K++++
Sbjct: 350 NDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVA 409
Query: 705 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIA 764
+ ++ + ++ILDE TS +D ++ + ++++ GR L+ H + + D I
Sbjct: 410 IARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIID-ADEII 468
Query: 765 IMANGSL 771
++ NG +
Sbjct: 469 VLDNGRI 475
|
Length = 497 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 2e-06
Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 638
+ + LTL Q +AL+G +G+GKST ++ GL P +G+ L G +EI + +
Sbjct: 495 IENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGI----PREEIPREV 550
Query: 639 GVCP----QYDILFPELTVREHLEMF-------AVLKGVKEELLESVVAEMVDEVGLADK 687
DI E TVR++L ++ +++ K+ + V+ G +
Sbjct: 551 LANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPG--GYDAE 608
Query: 688 VNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP 727
+ LSGG +++L + AL+ + ++ILDE TS +DP
Sbjct: 609 LAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDP 648
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 2e-06
Identities = 50/206 (24%), Positives = 85/206 (41%), Gaps = 51/206 (24%)
Query: 1464 IIY-LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1522
IY + + KV P K + ++ S G G LG NGAGK+T L +++G +
Sbjct: 3 YIYTMNRVSKVVPPKK-----EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE 57
Query: 1523 TDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLEL-YARIKGV-------- 1573
+G A I+ +GY PQ L TV+E++E A IK
Sbjct: 58 FNGEAR-PAPGIK---------VGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEIS 107
Query: 1574 AEYRMDDVVMEKLVE-----FDLLKHAK---------------------KPSFTLSGGNK 1607
A++ D M+ L+ +++ A LSGG +
Sbjct: 108 AKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGER 167
Query: 1608 RKLSVAIAMIGDPPIVILDEPSTGMD 1633
R++++ ++ P +++LDEP+ +D
Sbjct: 168 RRVALCRLLLSKPDMLLLDEPTNHLD 193
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 2e-06
Identities = 46/142 (32%), Positives = 78/142 (54%), Gaps = 10/142 (7%)
Query: 592 LALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGLGVCPQYDILFPE 650
+ ++G GAGKS+ ++ L ++ G L+ G +I+ + ++RK LG+ PQ +LF
Sbjct: 1268 VGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG 1327
Query: 651 LTVREHLEMFAVLKGVKEELLESVV-AEMVDEV-----GLADKVNIVVRALSGGMKRKLS 704
TVR +L+ F +L ES+ A + D + GL +V+ S G ++ LS
Sbjct: 1328 -TVRFNLDPFNEHNDA--DLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLS 1384
Query: 705 LGIALIGDSKVVILDEPTSGMD 726
L AL+ SK+++LDE T+ +D
Sbjct: 1385 LARALLRRSKILVLDEATAAVD 1406
|
Length = 1622 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 3e-06
Identities = 28/103 (27%), Positives = 61/103 (59%), Gaps = 8/103 (7%)
Query: 1569 RIKGVAEYRMDDVVMEKLVE----FDLLK-HAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1623
+I G+ + + D ++EK + +D LK ++ LSGG +++L +A + +P ++
Sbjct: 130 KIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVI 189
Query: 1624 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEA 1666
++DEP++ +DPI+ + E++ L + ++I+ TH+M +A
Sbjct: 190 LMDEPTSALDPISTLKVEELVQEL---KKDYSIIIVTHNMQQA 229
|
Length = 271 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 50.1 bits (119), Expect = 3e-06
Identities = 21/73 (28%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Query: 684 LADKVNIVVRALSGGMKRKLSLGIALI---GDSKVVILDEPTSGMDPYSMRLTWQLIKKI 740
L + ++++ +S G KR L+L +AL+ ++++DEP +G+ P +R +L+K++
Sbjct: 179 LLRLLKLLIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKEL 238
Query: 741 KKGRI-ILLTTHS 752
+ ++ TTHS
Sbjct: 239 SEKGAQLIFTTHS 251
|
Length = 256 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 4e-06
Identities = 45/196 (22%), Positives = 91/196 (46%), Gaps = 21/196 (10%)
Query: 1501 FLGTNGAGKTTTL-------SMISGEEYPTDGTAFIFGKDIRS---DPKAARRLIGYCPQ 1550
+G +G GK+T + +I G + +G ++ G DI D R+ +G Q
Sbjct: 34 LIGPSGCGKSTFIRTLNRMNDLIPG--FRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQ 91
Query: 1551 FDALLEYLTVQEHLELYARIKGVA-EYRMDDVVMEKLVEFDLLKHAK----KPSFTLSGG 1605
++ +++ RI G E +++ V E L L K K + LSGG
Sbjct: 92 KPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGG 150
Query: 1606 NKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNE 1665
+++L +A + P ++++DEP + +DPI+ + ++I +L + +++ TH+M +
Sbjct: 151 QQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL---KEDYTIVIVTHNMQQ 207
Query: 1666 AQALCTRIGIMVGGQL 1681
A + + G++
Sbjct: 208 ATRVSKYTSFFLNGEI 223
|
Length = 250 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 4e-06
Identities = 56/233 (24%), Positives = 109/233 (46%), Gaps = 26/233 (11%)
Query: 1481 DAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPK 1539
D K L F++ AG+ +G +GAGKT+ L+ + G P G+ I G ++R DP+
Sbjct: 361 DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGF-LPYQGSLKINGIELRELDPE 419
Query: 1540 AARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLV------EF-DLL 1592
+ R+ + + Q + L + T+++++ L D +++ + EF LL
Sbjct: 420 SWRKHLSWVGQ-NPQLPHGTLRDNVLL-------GNPDASDEQLQQALENAWVSEFLPLL 471
Query: 1593 KHA-----KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRL 1647
+ LS G ++L++A A++ +++LDEP+ +D +++ + + ++
Sbjct: 472 PQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAA 531
Query: 1648 STRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1700
S RQ ++ TH + + +I +M GQ+ G L G F L
Sbjct: 532 SRRQ---TTLMVTHQLEDLAQ-WDQIWVMQDGQIVQQGDYAELSQAGGLFATL 580
|
Length = 588 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 5e-06
Identities = 63/249 (25%), Positives = 109/249 (43%), Gaps = 53/249 (21%)
Query: 1485 AVHSLTFSVQAGECFGFLGTNGAGKT-TTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1543
AV +L+FS+Q GE +G +G+GK+ T L+++ E G ++ D RR
Sbjct: 31 AVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA--------GGLVQCDKMLLRR 82
Query: 1544 ----LIGYCPQFDALL-------------EYLT-----------VQEHLELY---ARIKG 1572
+I Q A + E +T + E + L+ +R +
Sbjct: 83 RSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEA 142
Query: 1573 VAEY-RMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTG 1631
+ E RM D V + L ++ + LSGG ++++ +A+A+ P ++I DEP+T
Sbjct: 143 MVEAKRMLDQVRIPEAQTILSRYPHQ----LSGGMRQRVMIAMALSCRPAVLIADEPTTA 198
Query: 1632 MDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS----- 1686
+D + + ++I L ++ VI TH M + R+ +M G+ GS
Sbjct: 199 LDVTIQAQILQLIKVLQ-KEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIF 257
Query: 1687 --PQHLKTR 1693
PQH TR
Sbjct: 258 HAPQHPYTR 266
|
Length = 623 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 6e-06
Identities = 55/229 (24%), Positives = 84/229 (36%), Gaps = 37/229 (16%)
Query: 1493 VQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-------PKAARRLI 1545
++ GE LG G+G +T L I+ TDG I D K R +
Sbjct: 84 IKPGELTVVLGRPGSGCSTLLKTIASN---TDGFHIGVEGVITYDGITPEEIKKHYRGDV 140
Query: 1546 GYCPQFDALLEYLTVQEHLELYARIKGVA---------EYR--MDDVVMEKLVEFDLLKH 1594
Y + D +LTV E L+ AR K EY + DV M L H
Sbjct: 141 VYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYG----LSH 196
Query: 1595 AKKPSF------TLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRL- 1647
+ +SGG ++++S+A A +G I D + G+D E I L
Sbjct: 197 TRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATA---LEFIRALK 253
Query: 1648 -STRQGKTAVILTTHSMNE-AQALCTRIGIMVGGQLRCIGSPQHLKTRF 1694
S T ++ + ++ A L ++ ++ G G K F
Sbjct: 254 TSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYF 302
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 6e-06
Identities = 53/207 (25%), Positives = 94/207 (45%), Gaps = 31/207 (14%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMI-SGEEYPT 1523
+ LRN+ Y D +V + +++ GE +G NG+GK +TL+M+ +G P
Sbjct: 323 LELRNVTFAYQ-----DNGFSVGPINLTIKRGELLFLIGGNGSGK-STLAMLLTGLYQPQ 376
Query: 1524 DGTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV 1582
G + GK + + P+ R+L V L+ ++ G + +
Sbjct: 377 SGEILLDGKPVTAEQPEDYRKLFS------------AVFTDFHLFDQLLGPEGKPANPAL 424
Query: 1583 MEKLVEFDLLKHAKKPSFT--------LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP 1634
+EK +E LK A K LS G K++L++ +A+ + I++LDE + DP
Sbjct: 425 VEKWLER--LKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDP 482
Query: 1635 IAKRFMWEVISRLSTRQGKTAVILTTH 1661
+R ++V+ L GKT + +H
Sbjct: 483 HFRREFYQVLLPLLQEMGKT-IFAISH 508
|
Length = 547 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 7e-06
Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 34/146 (23%)
Query: 592 LALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQ---YDILF 648
LA++G NG GK+T + LVG + P +G + + +N +G Q YD F
Sbjct: 348 LAIIGENGVGKTTLLRTLVGELEPDSG-TVKWSENAN---------IGYYAQDHAYD--F 395
Query: 649 PE-LTVREHLEMFA-------VLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMK 700
LT+ + + + ++G LL S D + V+ LSGG K
Sbjct: 396 ENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFS-----------QDDIKKSVKVLSGGEK 444
Query: 701 RKLSLGIALIGDSKVVILDEPTSGMD 726
++ G ++ V+++DEPT+ MD
Sbjct: 445 GRMLFGKLMMQKPNVLVMDEPTNHMD 470
|
Length = 530 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 49.4 bits (117), Expect = 7e-06
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 1564 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMI---GDP 1620
+ R E ++ D+V +E DLL+ K +S G KR L++ +A++
Sbjct: 152 ILGNLRNLRNIELKLLDLVKRLFLESDLLRLLKLLIKGISDGTKRLLALLLALLSALPKG 211
Query: 1621 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHS 1662
++++DEP G+ P R + E++ LS + + +I TTHS
Sbjct: 212 SLLLIDEPENGLHPKLLRKLVELLKELSEKGAQ--LIFTTHS 251
|
Length = 256 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 9e-06
Identities = 52/207 (25%), Positives = 99/207 (47%), Gaps = 13/207 (6%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP-PTTGDALVFGK--NITADMDEIR 635
V+ + +L +IL + G GAG++ + L G P G+ + GK I I
Sbjct: 278 VDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIA 337
Query: 636 KGLGVCPQ---YDILFPELTVREH-----LEMFAVLKGVKEELLESVVAEMVDEVGL-AD 686
+G+ + P+ D + P + V ++ L+ F + + + E + + +
Sbjct: 338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTA 397
Query: 687 KVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-KKGRI 745
+ + LSGG ++K L L+ + K++ILDEPT G+D + ++LI ++ ++G
Sbjct: 398 SPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVA 457
Query: 746 ILLTTHSMDEAEELGDRIAIMANGSLK 772
I++ + + E L DR+ +M G LK
Sbjct: 458 IIVISSELPEVLGLSDRVLVMHEGKLK 484
|
Length = 506 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 9e-06
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY 1521
+ +I NL K + K+ + L+F + G G +G NGAGK+T MI+G+E
Sbjct: 320 DKVIEAENLSKGF------GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ 373
Query: 1522 PTDGT 1526
P GT
Sbjct: 374 PDSGT 378
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 9e-06
Identities = 40/186 (21%), Positives = 65/186 (34%), Gaps = 60/186 (32%)
Query: 1493 VQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFD 1552
V+ GE G +G NG GKTT + +++G+ P + D Y PQ+
Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGD-------NDEWD----GITPVYKPQY- 69
Query: 1553 ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSV 1612
LSGG +++++
Sbjct: 70 -----------------------------------------------IDLSGGELQRVAI 82
Query: 1613 AIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTR 1672
A A++ + + DEPS +D + I RLS KTA+++ H + L R
Sbjct: 83 AAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVV-EHDLAVLDYLSDR 141
Query: 1673 IGIMVG 1678
I + G
Sbjct: 142 IHVFEG 147
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 9e-06
Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 18/145 (12%)
Query: 593 ALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEIRKGLGVCPQ-----YDI 646
AL+GH G+GKST S+L+G P T G+ + G+ + + +R+G+ + Q D
Sbjct: 371 ALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADT 430
Query: 647 LFPELTVREHLEMFAVLKGVKEELLESV-VAEMVDEVGLADKVNIVV----RALSGGMKR 701
+T+ + V + LE+V +AE+ L D + + LS G K+
Sbjct: 431 FLANVTLGRDISEEQVW-----QALETVQLAELAR--SLPDGLYTPLGEQGNNLSVGQKQ 483
Query: 702 KLSLGIALIGDSKVVILDEPTSGMD 726
L+L L+ +++ILDE T+ +D
Sbjct: 484 LLALARVLVQTPQILILDEATANID 508
|
Length = 592 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 1e-05
Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 30/170 (17%)
Query: 583 QLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD------------ 630
+L + +N+ + L+G NGAGKST + +L G + G +++ +++
Sbjct: 23 ELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGR-IIYEQDLIVARLQQDPPRNVEG 81
Query: 631 --MDEIRKGLG----VCPQYDILFPELTVREHLEMFAVLKGVKEEL-------LESVVAE 677
D + +G+ +Y + + + L ++E+L LE+ + E
Sbjct: 82 TVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINE 141
Query: 678 MVDEVGL-ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 726
++ ++GL D + +LSGG RK +LG AL+ + V++LDEPT+ +D
Sbjct: 142 VLAQLGLDPDAA---LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188
|
Length = 635 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 1e-05
Identities = 21/82 (25%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 1599 SFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVIL 1658
+ L+ G +K+ +AIA+ P ++I DEP+ M+P + ++ +++RL+ + T ++L
Sbjct: 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLN-QNNNTTILL 214
Query: 1659 TTHSMNEAQALCTRIGIMVGGQ 1680
+H + +I ++ GQ
Sbjct: 215 ISHDLQMLSQWADKINVLYCGQ 236
|
Length = 330 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-05
Identities = 46/197 (23%), Positives = 95/197 (48%), Gaps = 25/197 (12%)
Query: 582 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVC 641
+ L + + ++LA+ G G+GK++ + +++G + P+ G G+ +
Sbjct: 56 INLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR------------ISFS 103
Query: 642 PQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV---DEVGLADKVNIVVR----A 694
Q+ + P T++E++ +F V E +SVV D +K N V+
Sbjct: 104 SQFSWIMPG-TIKENI-IFGV--SYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGIT 159
Query: 695 LSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ-LIKKIKKGRIILLTTHSM 753
LSGG + ++SL A+ D+ + +LD P +D ++ + ++ + K+ + +L T M
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKM 219
Query: 754 DEAEELGDRIAIMANGS 770
+ ++ D+I I+ GS
Sbjct: 220 EHLKK-ADKILILHEGS 235
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-05
Identities = 47/191 (24%), Positives = 86/191 (45%), Gaps = 40/191 (20%)
Query: 1496 GECFGFLGTNGAGKTTTLSMISGE--------EYPTDGTAFI-----------FGKDIRS 1536
G+ G LG NG GK+T L +++GE E P I F K
Sbjct: 100 GKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEG 159
Query: 1537 DPKAARRLIGYCPQF-DALLEYL--TVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK 1593
+ +A + PQ+ D + + + V E L+ +G + ++ + +E +++ D+ +
Sbjct: 160 ELRAVHK-----PQYVDLIPKVVKGKVGELLKK-VDERGKFDEVVERLGLENVLDRDVSE 213
Query: 1594 HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF-MWEVISRLSTRQG 1652
LSGG +++++A A++ D + DEPS+ +D I +R VI L+ +
Sbjct: 214 --------LSGGELQRVAIAAALLRDADVYFFDEPSSYLD-IRQRLNAARVIRELA--ED 262
Query: 1653 KTAVILTTHSM 1663
VI+ H +
Sbjct: 263 GKYVIVVEHDL 273
|
Length = 591 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-05
Identities = 53/199 (26%), Positives = 101/199 (50%), Gaps = 29/199 (14%)
Query: 593 ALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGLGVCPQYDILFPEL 651
A++G +G+GKST + +L+G P +G G+++ D+ +R+ LGV Q L
Sbjct: 483 AIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG- 541
Query: 652 TVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKV-------NIVVR----ALSGGMK 700
++ E++ A L +E E A M GLA+ + + V+ LSGG +
Sbjct: 542 SIFENIAGGAPL--TLDEAWE--AARM---AGLAEDIRAMPMGMHTVISEGGGTLSGGQR 594
Query: 701 RKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIIL---LTTHSMDEAE 757
++L + AL+ ++++ DE TS +D + + + ++++K RI++ L+T + A
Sbjct: 595 QRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLST--IRNA- 651
Query: 758 ELGDRIAIMANGSLKCCGS 776
DRI ++ G + G+
Sbjct: 652 ---DRIYVLDAGRVVQQGT 667
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-05
Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 45/168 (26%)
Query: 594 LLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTV 653
+LG NGAGKST + ++ G+ G+A I +G PQ L P TV
Sbjct: 36 VLGLNGAGKSTLLRIMAGVDKEFNGEA-RPAPGIK---------VGYLPQEPQLDPTKTV 85
Query: 654 REHLEM-FAVLKGVKEEL-------------LESVVAEM------VDEVGLAD---KVNI 690
RE++E A +K + +++++AE +D D K+ I
Sbjct: 86 RENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEI 145
Query: 691 VVRAL------------SGGMKRKLSLGIALIGDSKVVILDEPTSGMD 726
+ AL SGG +R+++L L+ +++LDEPT+ +D
Sbjct: 146 AMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLD 193
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 2e-05
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY 1521
+ +I NL K + ++ + L+FS+ G G +G NGAGK+T MI+G+E
Sbjct: 322 DKVIEAENLSKSF------GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ 375
Query: 1522 PTDGT 1526
P GT
Sbjct: 376 PDSGT 380
|
Length = 556 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 3e-05
Identities = 48/209 (22%), Positives = 80/209 (38%), Gaps = 49/209 (23%)
Query: 564 KLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVF 623
L + ++ L + + L + G +GAGK++ + L GL P +G
Sbjct: 394 TLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSG----- 448
Query: 624 GKNITADMDEIRKGLGVCPQYDILF-------PELTVRE------------HLEMFAVLK 664
+ + +LF P+ T+RE E+ AVL
Sbjct: 449 -------------RISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLH 495
Query: 665 GVK-EELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTS 723
V +L E + DE D+V LSGG +++L+ L+ K V LDE TS
Sbjct: 496 KVGLGDLAERL-----DEEDRWDRV------LSGGEQQRLAFARLLLHKPKWVFLDEATS 544
Query: 724 GMDPYSMRLTWQLIKKIKKGRIILLTTHS 752
+D + +QL+K+ ++ H
Sbjct: 545 ALDEETEDRLYQLLKEELPDATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 695 LSGGMKRKLS----LGIALIGDSKVVILDEPTSGMDPYS-MRLTWQLIKKIKKGRIILLT 749
LSGG K + L +A + + ILDE G+DP L +++ + KG +++
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVI 137
Query: 750 TH 751
TH
Sbjct: 138 TH 139
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 4e-05
Identities = 54/228 (23%), Positives = 107/228 (46%), Gaps = 22/228 (9%)
Query: 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1522
A++ L+ + K +PG K A+ +V G +G NGAGK+T + +++G Y
Sbjct: 3 ALLQLKGIDKAFPGVK------ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTG-IYT 55
Query: 1523 TDGTAFIF-GKDIR-SDPKAARRL-IGYCPQFDALLEYLTVQEHLEL-------YARIKG 1572
D + ++ GK++ + PK+++ IG Q L+ LT+ E++ L + RI
Sbjct: 56 RDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDW 115
Query: 1573 VAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGM 1632
Y D ++ +L +L + K LS G ++ + +A + + ++I+DEP+ +
Sbjct: 116 KKMYAEADKLLARL---NLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDAL 172
Query: 1633 DPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQ 1680
++ VI L + ++ +H + E +C + + GQ
Sbjct: 173 TDTETESLFRVIREL--KSQGRGIVYISHRLKEIFEICDDVTVFRDGQ 218
|
Length = 501 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 4e-05
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 670 LLESVVAEMVDEVG---LADKVNIV-VRALSGGMKRKLSLGIALIGDSKVVILDEPTSGM 725
LL+ + E+ + G V I LSGG K +L+L L+ + +++LDEPT+ +
Sbjct: 42 LLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHL 101
Query: 726 DPYSMRLTWQLIKKIKK-GRIILLTTH 751
D S + L + +K+ ++L +H
Sbjct: 102 DLES--IEA-LEEALKEYPGTVILVSH 125
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 4e-05
Identities = 49/206 (23%), Positives = 91/206 (44%), Gaps = 32/206 (15%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 638
++ + L + ++A++G G GK++ IS ++G + ++V IR +
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV-----------IRGSV 681
Query: 639 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA---------DKVN 689
PQ +F TVRE+ +L G E +D L D
Sbjct: 682 AYVPQVSWIF-NATVREN-----ILFGSDFE--SERYWRAIDVTALQHDLDLLPGRDLTE 733
Query: 690 IVVRA--LSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTW-QLIKKIKKGRII 746
I R +SGG K+++S+ A+ +S + I D+P S +D + + +K KG+
Sbjct: 734 IGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTR 793
Query: 747 LLTTHSMDEAEELGDRIAIMANGSLK 772
+L T+ + + DRI +++ G +K
Sbjct: 794 VLVTNQLHFLPLM-DRIILVSEGMIK 818
|
Length = 1495 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 5e-05
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 17/153 (11%)
Query: 1483 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1542
++ + S+ ++ G G LG NGAGK+T + +++GE P G + K I+
Sbjct: 325 RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGL-AKGIK------- 376
Query: 1543 RLIGYCPQFDALLEYLTVQEH-LELYARIKGVAEYRMDDVVMEKLVEFDLL-KHAKKPSF 1600
+GY Q LE+L E L+ AR+ A ++ + + L F + +
Sbjct: 377 --LGYFAQHQ--LEFLRADESPLQHLARL---APQELEQKLRDYLGGFGFQGDKVTEETR 429
Query: 1601 TLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMD 1633
SGG K +L +A+ + P +++LDEP+ +D
Sbjct: 430 RFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462
|
Length = 638 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 5e-05
Identities = 43/188 (22%), Positives = 81/188 (43%), Gaps = 13/188 (6%)
Query: 1477 GKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGE--EYPTDGTAFIFGK-D 1533
+R + + +L ++ G+ +G +GAGKTT L MI G + GK +
Sbjct: 390 RQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVE 449
Query: 1534 IRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK 1593
+ + +A Y P+F + T+ EHL A ++ + D +
Sbjct: 450 VPKNTVSALIPGEYEPEFGEV----TILEHLRSKTGDLNAAV-----EILNRAGLSDAVL 500
Query: 1594 HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGK 1653
+ +K S LS G K + +A + P ++++DE + +D + + IS L+ G
Sbjct: 501 YRRKFS-ELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGI 559
Query: 1654 TAVILTTH 1661
T +++T
Sbjct: 560 TLIVVTHR 567
|
Length = 593 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 7e-05
Identities = 50/213 (23%), Positives = 78/213 (36%), Gaps = 75/213 (35%)
Query: 1464 IIY-LRNLRKVYPGGKR----------SDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTT 1512
IY + + KV P K+ AK+ V LG NGAGK+T
Sbjct: 5 YIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGV---------------LGLNGAGKSTL 49
Query: 1513 LSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLEL-YARIK 1571
L +++G + +G A I+ +GY PQ L TV+E++E A +K
Sbjct: 50 LRIMAGVDKEFEGEAR-PAPGIK---------VGYLPQEPQLDPEKTVRENVEEGVAEVK 99
Query: 1572 GV--------AEYRMDDVVMEKLVE-----FDLLKHAK---------------------K 1597
A Y D + L +++ A
Sbjct: 100 AALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDA 159
Query: 1598 PSFTLSGGNKRKLSVAIA--MIGDPPIVILDEP 1628
LSGG +R+ VA+ ++ P +++LDEP
Sbjct: 160 KVTKLSGGERRR--VALCRLLLEKPDMLLLDEP 190
|
Length = 556 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 9e-05
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 580 NSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTG 618
+ LT+ + L+G NGAGKST + ++ G + P G
Sbjct: 17 KDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEG 55
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 9e-05
Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 34/147 (23%)
Query: 592 LALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPEL 651
+AL+G NG GK+T + +++G + +G K A D+ R L PE
Sbjct: 348 IALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHR---------AELDPEK 398
Query: 652 TVREHLEMFAVLKGVKEELLESVVAEMVDEVG------LAD------KVNIVVRALSGGM 699
TV ++L +G K+E+ MV+ L D + V+ALSGG
Sbjct: 399 TVMDNLA-----EG-KQEV-------MVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGE 445
Query: 700 KRKLSLGIALIGDSKVVILDEPTSGMD 726
+ +L L + S ++ILDEPT+ +D
Sbjct: 446 RNRLLLARLFLKPSNLLILDEPTNDLD 472
|
Length = 635 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-04
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 12/108 (11%)
Query: 1583 MEKLVEFDLLKHA---------KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMD 1633
M++ VE+ L K A + ++LSGG +++L +A + P +++LDEP + +D
Sbjct: 129 MDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALD 188
Query: 1634 PIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
PI+ + E+I+ L +Q T VI+ TH+M +A M G+L
Sbjct: 189 PISTGRIEELITEL--KQDYTVVIV-THNMQQAARCSDYTAFMYLGEL 233
|
Length = 260 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 1e-04
Identities = 55/228 (24%), Positives = 101/228 (44%), Gaps = 48/228 (21%)
Query: 1485 AVHSLTFSVQAGECFGFLGTNGAGKT-TTLSMISGEEYPTDGTA--FIF-GKDIRS-DPK 1539
AV +++SV+ GE G +G +G+GK+ ++L+++ +YP A F G+D++ K
Sbjct: 22 AVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK 81
Query: 1540 AARRLIG-----------------YCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV 1582
R L+G Y F ++E + V + G + R +
Sbjct: 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQ-IMEAIKVHQ--------GGNKKTRRQRAI 132
Query: 1583 MEKLVEFDLLKHAKKPS---------FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMD 1633
DLL P LSGG +++ +A+A+ P ++I DEP+T +D
Sbjct: 133 -------DLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALD 185
Query: 1634 PIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
+ + E++ L ++ A++L TH + +I +M GQ+
Sbjct: 186 VTIQAQIIELLLELQ-QKENMALVLITHDLALVAEAAHKIIVMYAGQV 232
|
Length = 326 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 44/188 (23%), Positives = 76/188 (40%), Gaps = 37/188 (19%)
Query: 591 ILALLGHNGAGKSTTI-SMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFP 649
+ ++G NGAGK+T I ++ L TG+ K D IR+G V Q + F
Sbjct: 24 LTLIVGQNGAGKTTIIEALKYAL----TGELPPNSKGGAHDPKLIREG-EVRAQVKLAFE 78
Query: 650 -----ELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLS 704
+ T+ L + + + + +M SGG K S
Sbjct: 79 NANGKKYTITRSLAILENVIFCHQGESNWPLLDMRG-------------RCSGGEKVLAS 125
Query: 705 LGIAL------IGDSKVVILDEPTSGMDPYSMRLTW-QLIKKIKKGRI--ILLTTHSMDE 755
L I L + ++ LDEPT+ +D ++ + ++I++ K + +++ TH
Sbjct: 126 LIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHD--- 182
Query: 756 AEELGDRI 763
EEL D
Sbjct: 183 -EELVDAA 189
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 2e-04
Identities = 50/216 (23%), Positives = 106/216 (49%), Gaps = 11/216 (5%)
Query: 582 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGLGV 640
+ +T++ + + ++G GAGKS+ L + G+ ++ G NI + ++R + +
Sbjct: 1305 INVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITI 1364
Query: 641 CPQYDILFPELTVREHLEMFAVLKGVKEELLESV-VAEMVDEV-GLADKVNIVV----RA 694
PQ +LF ++R +L+ F+ EE+ ++ +A + V L DK++
Sbjct: 1365 IPQDPVLFSG-SLRMNLDPFSQYS--DEEVWWALELAHLKTFVSALPDKLDHECAEGGEN 1421
Query: 695 LSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMD 754
LS G ++ + L AL+ +K+++LDE T+ +D + L I+ + +L H ++
Sbjct: 1422 LSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLN 1481
Query: 755 EAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTL 790
+ R+ ++ G + G+ L Q G+ Y++
Sbjct: 1482 TIMDY-TRVIVLDKGEVAEFGAPSNLLQQRGIFYSM 1516
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 2e-04
Identities = 52/217 (23%), Positives = 100/217 (46%), Gaps = 33/217 (15%)
Query: 573 RGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFG------KN 626
R +N + ++ E ++A++G G GKS+ +S L+ + G + G +
Sbjct: 648 RDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQ 707
Query: 627 ITADMDEIRKGLGVCPQYDILF----PELTVREHLEMFAVLKGVKEELLESVVAEMVDEV 682
D +R+ +ILF E ++ LE A+L + E+L S + E
Sbjct: 708 AWIQNDSLRE--------NILFGKALNEKYYQQVLEACALLPDL--EILPSGDRTEIGEK 757
Query: 683 GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLI---KK 739
G VN LSGG K+++SL A+ ++ + + D+P S +D + + ++ + +
Sbjct: 758 G----VN-----LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEG 808
Query: 740 IKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
+ K + +L TH + ++ D I +M+ G + GS
Sbjct: 809 VLKNKTRILVTHGISYLPQV-DVIIVMSGGKISEMGS 844
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 42/188 (22%), Positives = 80/188 (42%), Gaps = 38/188 (20%)
Query: 1496 GECFGFLGTNGAGKTTTLSMISGEEYPTDG------------TAF-------IFGKDIRS 1536
G+ G +G NG GK+T L +++G+ P G F F K +
Sbjct: 26 GQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEG 85
Query: 1537 DPKAARRLIGYCPQFDALLEYLTVQEHLELYARI--KGVAEYRMDDVVMEKLVEFDLLKH 1594
D K + PQ+ L+ + EL + +G + +D + + +++ ++ +
Sbjct: 86 DVKVIVK-----PQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQ- 139
Query: 1595 AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF-MWEVISRLSTRQGK 1653
LSGG +++++A A+ D DEPS+ +D I +R +I L+ +
Sbjct: 140 -------LSGGELQRVAIAAALARDADFYFFDEPSSYLD-IKQRLNAARLIRELA--EDD 189
Query: 1654 TAVILTTH 1661
V++ H
Sbjct: 190 NYVLVVEH 197
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-04
Identities = 44/197 (22%), Positives = 94/197 (47%), Gaps = 25/197 (12%)
Query: 582 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVC 641
+ L + Q+LA+ G G+GKS+ + M++G + P+ G G+ +
Sbjct: 445 ISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR------------ISFS 492
Query: 642 PQYDILFPELTVREHLEMFAVLKGVKEELLESVV-AEMVDE--VGLADKVNIVVR----A 694
PQ + P T+++++ +F + E SV+ A ++E +K V+
Sbjct: 493 PQTSWIMPG-TIKDNI-IFGL--SYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGIT 548
Query: 695 LSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ-LIKKIKKGRIILLTTHSM 753
LSGG + ++SL A+ D+ + +LD P + +D + + ++ + K+ + +L T +
Sbjct: 549 LSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKL 608
Query: 754 DEAEELGDRIAIMANGS 770
+ ++ D+I ++ G
Sbjct: 609 EHLKK-ADKILLLHEGV 624
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-04
Identities = 55/221 (24%), Positives = 93/221 (42%), Gaps = 68/221 (30%)
Query: 1474 YPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDG-------- 1525
YP A+ ++ F+++ G+ G G G+GK+T LS+I ++G
Sbjct: 323 YPQTDHP----ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIP 378
Query: 1526 ------------------TAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELY 1567
T F+F SD A +G P DA Q+ +E
Sbjct: 379 LTKLQLDSWRSRLAVVSQTPFLF-----SDTVANNIALG-RP--DA------TQQEIEHV 424
Query: 1568 ARIKGVAE--YRM----DDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1621
AR+ V + R+ D V E+ V LSGG K+++S+A A++ +
Sbjct: 425 ARLASVHDDILRLPQGYDTEVGERGV-------------MLSGGQKQRISIARALLLNAE 471
Query: 1622 IVILDEPSTGMDPIAKRFMWEVISRLST-RQGKTAVILTTH 1661
I+ILD+ + +D R +++ L +G+T VI++ H
Sbjct: 472 ILILDDALSAVD---GRTEHQILHNLRQWGEGRT-VIISAH 508
|
Length = 569 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-04
Identities = 43/172 (25%), Positives = 69/172 (40%), Gaps = 48/172 (27%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT-ADMDEIRKG 637
++ L L I+ ++G NGAGKST M+ G P +G + G+ + A +D+ R
Sbjct: 338 IDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSG-TIKIGETVKLAYVDQSRDA 396
Query: 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRA--- 694
L P TV E ++ +D + L K + RA
Sbjct: 397 LD---------PNKTVWE------------------EISGGLDIIQLG-KREVPSRAYVG 428
Query: 695 ---------------LSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMR 731
LSGG + ++ L L V++LDEPT+ +D ++R
Sbjct: 429 RFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLR 480
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 44/187 (23%), Positives = 77/187 (41%), Gaps = 14/187 (7%)
Query: 1488 SLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL--- 1544
++ + G+ +G G GK++ L I GE +G K+ A R
Sbjct: 19 NINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNR 78
Query: 1545 --IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSF-- 1600
+ Y Q LL TV+E++ + Y+ + DLL +
Sbjct: 79 YSVAYAAQKPWLLN-ATVEENITFGSPFNK-QRYKAVTDACSLQPDIDLLPFGDQTEIGE 136
Query: 1601 ---TLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMD-PIAKRFMWEVISRLSTRQGKTAV 1656
LSGG ++++ VA A+ + IV LD+P + +D ++ M E I + + K +
Sbjct: 137 RGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKF-LQDDKRTL 195
Query: 1657 ILTTHSM 1663
+L TH +
Sbjct: 196 VLVTHKL 202
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 2e-04
Identities = 35/184 (19%), Positives = 61/184 (33%), Gaps = 54/184 (29%)
Query: 589 NQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILF 648
+++ ++G G+GK+T L + P G + D ++I
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYI------DGEDIL------------- 42
Query: 649 PELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIA 708
E V + L V + SG ++ +L+L +A
Sbjct: 43 ----------------------------EEVLDQLLLIIVGGKKASGSGELRLRLALALA 74
Query: 709 LIGDSKVVILDEPTSGMDPYS-------MRLTWQLIKKIKKGRIILLTTHSMDEAEELGD 761
V+ILDE TS +D L L+ K +K ++LTT+ +
Sbjct: 75 RKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALL 134
Query: 762 RIAI 765
R
Sbjct: 135 RRRF 138
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 3e-04
Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 46/258 (17%)
Query: 1478 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG-EEYPTDGTAFIF------ 1530
K+ D K + +++F+++ GE G LG +GAGK+ + ++ G ++Y I+
Sbjct: 8 KKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCE 67
Query: 1531 --------GKDIRSDPKAARRLIGYCPQFDALLEYLT----------VQEHLELYAR--- 1569
K P L F L + L +Q LY
Sbjct: 68 KCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTV 127
Query: 1570 IKGV------AEYRMDDVVME--KLVEFDLLKH-----AKKPSFTLSGGNKRKLSVAIAM 1616
+ V Y + V L+E L H A+ LSGG K+++ +A +
Sbjct: 128 LDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARD----LSGGEKQRVVLARQL 183
Query: 1617 IGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIM 1676
+P + + DEP+ +DP + + + G + ++LT+H + L + +
Sbjct: 184 AKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGIS-MVLTSHWPEVIEDLSDKAIWL 242
Query: 1677 VGGQLRCIGSPQHLKTRF 1694
G+++ G+P + F
Sbjct: 243 ENGEIKEEGTPDEVVAVF 260
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 3e-04
Identities = 51/219 (23%), Positives = 98/219 (44%), Gaps = 32/219 (14%)
Query: 1451 ERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKT 1510
E + LSG V+ LR + G + + + + + ++Q G+ +G +G+GK+
Sbjct: 469 EPSPRLSGYVE--------LRNITFGYSPLEPPL-IENFSLTLQPGQRVALVGGSGSGKS 519
Query: 1511 TTLSMISGEEYPTDGTAFIFGKDIRSDPKAA-RRLIGYCPQFDALLEYLTVQEHLELYAR 1569
T +++G P G G P+ + Q D L TV+++L L+
Sbjct: 520 TIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQ-DIFLFEGTVRDNLTLWDP 578
Query: 1570 IKGVAEYRM---------DDVVMEKLVEFD--LLKHAKKPSFTLSGGNKRKLSVAIAMIG 1618
+ + + DV+ + +D L + LSGG +++L +A A++
Sbjct: 579 --TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGA----NLSGGQRQRLEIARALVR 632
Query: 1619 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVI 1657
+P I+ILDE ++ +DP ++ + L R+G T +I
Sbjct: 633 NPSILILDEATSALDPETEK---IIDDNLR-RRGCTCII 667
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 4e-04
Identities = 52/193 (26%), Positives = 93/193 (48%), Gaps = 30/193 (15%)
Query: 591 ILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPE 650
++A++G G GK++ IS ++G +PP + ++V IR + PQ +F
Sbjct: 645 LVAIVGSTGEGKTSLISAMLGELPPRSDASVV-----------IRGTVAYVPQVSWIF-N 692
Query: 651 LTVREHLEMFAVLKGVKEELLESVVAEMVD----------EVGLADKVNIVVRALSGGMK 700
TVR+++ + + E V A D E+G VNI SGG K
Sbjct: 693 ATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIG-ERGVNI-----SGGQK 746
Query: 701 RKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTW-QLIKKIKKGRIILLTTHSMDEAEEL 759
+++S+ A+ +S V I D+P S +D + R + + IK +G+ +L T+ + ++
Sbjct: 747 QRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQV 806
Query: 760 GDRIAIMANGSLK 772
DRI ++ G +K
Sbjct: 807 -DRIILVHEGMIK 818
|
Length = 1622 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 1601 TLSGGNKRKLSVAIAMIGDPP--IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVIL 1658
TLSGG +++ +A + +PP + ILDEPSTG+ + EVI L VIL
Sbjct: 87 TLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGL--IDLGNTVIL 144
Query: 1659 TTHS 1662
H+
Sbjct: 145 IEHN 148
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 5e-04
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 684 LADKVNIVVRA----LSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 739
L DK +V + LSGG K+++S+ A+I + K++ILDE TS +D S L + I
Sbjct: 565 LPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINN 624
Query: 740 IK--KGRIILLTTHSM 753
+K + RI ++ H +
Sbjct: 625 LKGNENRITIIIAHRL 640
|
Length = 1466 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 7e-04
Identities = 47/191 (24%), Positives = 90/191 (47%), Gaps = 22/191 (11%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGL--IPPTTGDALVFGKNITADMDEIRK 636
+ L L + ++ A++G NG+GKST + L G T G GK++ E R
Sbjct: 17 LRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRA 76
Query: 637 GLGV--CPQYDILFPELT-----------VREHLEMFAVLKGVKEELLESVVA--EMVDE 681
G G+ QY + P ++ VR + + + ++L+E +A +M ++
Sbjct: 77 GEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPED 136
Query: 682 VGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK 741
+ L VN+ SGG K++ + + + ++ ILDE SG+D ++++ + ++
Sbjct: 137 L-LTRSVNV---GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLR 192
Query: 742 KG-RIILLTTH 751
G R ++ TH
Sbjct: 193 DGKRSFIIVTH 203
|
Length = 248 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 7e-04
Identities = 62/265 (23%), Positives = 110/265 (41%), Gaps = 20/265 (7%)
Query: 1437 SDTLDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAG 1496
+ +DL + +E NR +SG I ++ Y R +H L+F V
Sbjct: 1207 GNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRY----RPGLPPVLHGLSFFVSPS 1262
Query: 1497 ECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDI-RSDPKAARRLIGYCPQFDALL 1555
E G +G GAGK++ L+ + G I D+ + RR++ PQ L
Sbjct: 1263 EKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLF 1322
Query: 1556 EYLTVQEHLELYAR------IKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRK 1609
TV+ +++ ++ + + + DV+ F L + S G ++
Sbjct: 1323 SG-TVRFNIDPFSEHNDADLWEALERAHIKDVIDRN--PFGLDAEVSEGGENFSVGQRQL 1379
Query: 1610 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILT-THSMNEAQA 1668
LS+A A++ I++LDE + +D +I R + K+ +L H +N
Sbjct: 1380 LSLARALLRRSKILVLDEATASVDVRTD----SLIQRTIREEFKSCTMLVIAHRLNTIID 1435
Query: 1669 LCTRIGIMVGGQLRCIGSPQHLKTR 1693
C +I ++ GQ+ SPQ L +R
Sbjct: 1436 -CDKILVLSSGQVLEYDSPQELLSR 1459
|
Length = 1495 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 7e-04
Identities = 40/161 (24%), Positives = 83/161 (51%), Gaps = 12/161 (7%)
Query: 617 TGDALVFGKNITA-DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVV 675
+G L+ G +I ++ ++R + Q +LF +++ E+++ F +E++ +
Sbjct: 1276 SGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIYENIK-FGKEDATREDVKRACK 1333
Query: 676 AEMVDEV--GLADKVNIVV----RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYS 729
+DE L +K + V ++LSGG K+++++ AL+ + K+++LDE TS +D S
Sbjct: 1334 FAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNS 1393
Query: 730 MRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMAN 768
+L + I IK + I+ H + + D+I + N
Sbjct: 1394 EKLIEKTIVDIKDKADKTIITIAHRIASIKR-SDKIVVFNN 1433
|
Length = 1466 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 0.001
Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 27/187 (14%)
Query: 1483 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1542
KV + ++ SV G+ LG G+GK+T L + + ++G + A
Sbjct: 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVW------------AE 720
Query: 1543 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAK------ 1596
R I Y PQ A + TV+ ++ + R+ D V +E DL +
Sbjct: 721 RSIAYVPQ-QAWIMNATVRGNILFFDEED---AARLADAVRVSQLEADLAQLGGGLETEI 776
Query: 1597 -KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP-IAKRFMWEVISRLSTRQGKT 1654
+ LSGG K ++S+A A+ + + +LD+P + +D + +R + E L GKT
Sbjct: 777 GEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECF--LGALAGKT 834
Query: 1655 AVILTTH 1661
V L TH
Sbjct: 835 RV-LATH 840
|
Length = 1560 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 0.002
Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 48/192 (25%)
Query: 1493 VQAGECFGFLGTNGAGKTTTLSMISGE----------EYPTD-------GTAF------I 1529
+ G+ G LG NG GKTT + ++SGE E D GT +
Sbjct: 96 PKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155
Query: 1530 FGKDIRSDPKAARRLIGYCPQF-DALLEYL--TVQEHLELYARIKGVAEYRMDDVVMEKL 1586
+ +I+ K PQ+ D + + V+E L K V E D V+E+L
Sbjct: 156 YNGEIKVVHK---------PQYVDLIPKVFKGKVRELL------KKVDERGKLDEVVERL 200
Query: 1587 VEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF-MWEVIS 1645
L + LSGG +++++A A++ D DEP++ +D I +R + +I
Sbjct: 201 ---GLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLD-IRQRLNVARLIR 256
Query: 1646 RLSTRQGKTAVI 1657
L+ +GK ++
Sbjct: 257 ELA--EGKYVLV 266
|
Length = 590 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 0.002
Identities = 44/169 (26%), Positives = 69/169 (40%), Gaps = 47/169 (27%)
Query: 594 LLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTV 653
+LG NGAGKST + ++ G+ G+A I +G PQ L PE TV
Sbjct: 38 VLGLNGAGKSTLLRIMAGVDKEFEGEA-RPAPGIK---------VGYLPQEPQLDPEKTV 87
Query: 654 REHLEM-FAVLKGVKEELLESVVAEMVDEVG----LAD-------------------KVN 689
RE++E A +K + + A + LA ++
Sbjct: 88 RENVEEGVAEVKAALDR-FNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLE 146
Query: 690 I------------VVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 726
I V LSGG +R+++L L+ +++LDEPT+ +D
Sbjct: 147 IAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 195
|
Length = 556 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 0.002
Identities = 19/57 (33%), Positives = 38/57 (66%)
Query: 1602 LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVIL 1658
LSGG K+++S+A A+I +P I+ILDE ++ +D ++ + + I+ L + + +I+
Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIII 636
|
Length = 1466 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.003
Identities = 25/101 (24%), Positives = 55/101 (54%), Gaps = 12/101 (11%)
Query: 1602 LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1661
LSGG ++++ +A+A++ P ++I DEP+T +D + + +++ L ++ ++ TH
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQ-QELNMGLLFITH 215
Query: 1662 SMNEAQALCTRIGIMVGGQLRCI---------GSPQHLKTR 1693
+++ + L R+ +M G RC+ +P H T+
Sbjct: 216 NLSIVRKLADRVAVMQNG--RCVEQNRAATLFSAPTHPYTQ 254
|
Length = 529 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.003
Identities = 48/196 (24%), Positives = 86/196 (43%), Gaps = 40/196 (20%)
Query: 1481 DAKVAVHSLT---FSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD 1537
D+K +L+ V G +G+ G GKT+ +S + GE P + +
Sbjct: 625 DSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI------- 677
Query: 1538 PKAARRLIGYCPQ----FDALLEYLTVQEHL--------ELYARIKGVAEYRMDDVVMEK 1585
R + Y PQ F+A TV++++ E Y R V + D ++
Sbjct: 678 ----RGTVAYVPQVSWIFNA-----TVRDNILFGSPFDPERYERAIDVTALQHD---LDL 725
Query: 1586 LVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVIS 1645
L DL + ++ +SGG K+++S+A A+ + + I D+P + +D R +V
Sbjct: 726 LPGGDLTEIGER-GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGR---QVFD 781
Query: 1646 RLSTR--QGKTAVILT 1659
+ +GKT V++T
Sbjct: 782 KCIKDELRGKTRVLVT 797
|
Length = 1622 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.003
Identities = 59/260 (22%), Positives = 99/260 (38%), Gaps = 47/260 (18%)
Query: 1412 WKGTRHRLCNTPSSYLEPLLQSSSESDTLDLNEDIDVQVERNRVLSGSVDNAIIYLRNLR 1471
W+ T RL + + E+ +D + R+ + I L NL
Sbjct: 352 WRATLLRLAE---------FRQALEAAQMDTEKPARTG---RRIDFDDNADHGITLENLS 399
Query: 1472 KVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFG 1531
P G+ + L F V+ GE G +GAGKT+ L ++G +P +G
Sbjct: 400 LRTPDGQ-----TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGL-WP-------WG 446
Query: 1532 KDIRSDPKAARRLIGYCPQFDALLEYL---TVQEHLELYARIKGVAEYRMDDVVMEKLVE 1588
S P + L + PQ YL T++E L Y A D ++ L +
Sbjct: 447 SGRISMPADSALL--FLPQ----RPYLPQGTLREAL-CYPNA---APDFSDAELVAVLHK 496
Query: 1589 FDL------LKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1642
L L + LSGG +++L+ A ++ P V LDE ++ +D + +++
Sbjct: 497 VGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQ 556
Query: 1643 VISRLSTRQGKTAVILTTHS 1662
++ VI H
Sbjct: 557 LLKEELPD---ATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.004
Identities = 42/187 (22%), Positives = 85/187 (45%), Gaps = 22/187 (11%)
Query: 1481 DAKVAVHSLT---FSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD 1537
D+K + +L+ + G +G G GKT+ +S + GE + ++ +
Sbjct: 625 DSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVI------- 677
Query: 1538 PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV-----MEKLVEFDLL 1592
R + Y PQ + TV+E++ + + +R DV ++ L DL
Sbjct: 678 ----RGSVAYVPQVSWIFN-ATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLT 732
Query: 1593 KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1652
+ ++ +SGG K+++S+A A+ + I I D+P + +D +++ + +G
Sbjct: 733 EIGER-GVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMK-DELKG 790
Query: 1653 KTAVILT 1659
KT V++T
Sbjct: 791 KTRVLVT 797
|
Length = 1495 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.004
Identities = 54/218 (24%), Positives = 90/218 (41%), Gaps = 26/218 (11%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPT--------TGDALVFGKNITA- 629
+ L L + ++ ALLG NGAGKST + L G + TGD + G+ + A
Sbjct: 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI 76
Query: 630 DMDEIRKGLGVCPQY-DILFPELTVREHLEM----FAVLKGVKEELLESVVAEMVDEVGL 684
D + + V PQ F + RE + + A G + + + G
Sbjct: 77 DAPRLARLRAVLPQAAQPAFA-FSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGA 135
Query: 685 ADKVNIVVRALSGGMKRKLSLGIAL---------IGDSKVVILDEPTSGMD-PYSMRLTW 734
V V LSGG ++ L + ++LDEPT+ +D + RL
Sbjct: 136 TALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLD 195
Query: 735 QLIKKIKKGRI-ILLTTHSMDEAEELGDRIAIMANGSL 771
+ + + + +L H + A DRIA++A+G++
Sbjct: 196 TVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAI 233
|
Length = 272 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.004
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 1602 LSGGNKRKLSVAIAM----IGDPPIVILDEPSTGMDPI-AKRFMWEVISRLSTRQGKTAV 1656
LSGG K ++A+ + + P+ ILDE G+DP + ++ L V
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHL---VKGAQV 134
Query: 1657 ILTTH 1661
I+ TH
Sbjct: 135 IVITH 139
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.004
Identities = 40/172 (23%), Positives = 56/172 (32%), Gaps = 32/172 (18%)
Query: 1503 GTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR--RLIGYCPQFDALLEYLTV 1560
G NGAGKTT + + Y G K DPK R + V
Sbjct: 29 GQNGAGKTTIIEALK---YALTGELPPNSKGGAHDPKLIREGEVRAQ------------V 73
Query: 1561 QEHLELYARIKGVAEYRM---DDVVMEKLVEFD--LLKHAKKPSFTLSGGNKRKLSVAI- 1614
+ E K + ++V+ E + LL SGG K S+ I
Sbjct: 74 KLAFENANGKKYTITRSLAILENVIFCHQGESNWPLLDMRG----RCSGGEKVLASLIIR 129
Query: 1615 -----AMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1661
+ I+ LDEP+T +D I Q +I+ TH
Sbjct: 130 LALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITH 181
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1833 | |||
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-210 Score=2134.26 Aligned_cols=1544 Identities=33% Similarity=0.539 Sum_probs=1168.9
Q ss_pred ceeEEcCChHHHHHHHHhccCCCccccccCCCCceEEEEEEecC------CCCeeEEEEEecCcccccCCCccccccc--
Q 000224 113 LVSRIYKDELELETYIRSDLYGTCSQVKDCLNPKIKGAVVFHDQ------GPELFDYSIRLNHTWAFSGFPDVKTIMD-- 184 (1833)
Q Consensus 113 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~vvF~~~------~~~~~~Y~ir~~~~~~~~~~~~~~~~~~-- 184 (1833)
+..++++||++|++.-..... +.+++|||+|++. .|..++|+||+|.+. .|+++...+
T Consensus 523 d~~~~~~~~~~~~~~~~~l~~----------~~~~~agI~F~~~~~~~~~~p~~v~y~IR~~~~~----~~~t~~~~~~~ 588 (2272)
T TIGR01257 523 DKFESYDDEVQLTQRALSLLE----------ENRFWAGVVFPDMYPWTSSLPPHVKYKIRMDIDV----VEKTNKIKDRY 588 (2272)
T ss_pred cceecCCCHHHHHHHHHHHhh----------cCCeEEEEEeCCCcccccCCCCceEEEEecCccc----cCcchhhcccc
Confidence 446789999999876544321 3468999999764 257899999999752 222221111
Q ss_pred -CCCCCCcccccCCCCcCCccchhhhhhHHHHHHHHHHHHHhhhcCCccccccccCCCCCCCCCccccCCCccccCCcce
Q 000224 185 -TNGPYLNDLELGVNIIPTMQYSFSGFLTLQQVLDSFIIFAAQQTGANVATENVEIPPSNLSGTHLSLKQPWTLYSPSNI 263 (1833)
Q Consensus 185 -~~~~~~~~~~~g~~~~~~~~Y~~~gFl~lQ~~id~aii~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 263 (1833)
..||+.... .+.+|+.+||++||++||+||++...+. . ....+
T Consensus 589 w~~g~~~~~~-------~~~~Y~~~GFl~lQ~ai~~aii~~~~~~----~-------------------------~~~~v 632 (2272)
T TIGR01257 589 WDSGPRADPV-------EDFRYIWGGFAYLQDMVEQGITRSQMQA----E-------------------------PPVGI 632 (2272)
T ss_pred ccCCCCCCcc-------ccccHHHhhHHHHHHHHHHHHHHhhcCC----C-------------------------cccce
Confidence 134443211 1247999999999999999999743211 0 01246
Q ss_pred eeeccCCCcccchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHH
Q 000224 264 RMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLYMMGLKDGIFHLSWFITYAAQFAVSS 343 (1833)
Q Consensus 264 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~iv~EKe~~lke~m~~mGl~~~~~wlsw~i~~~~~~~i~~ 343 (1833)
.+++||+|+|.+|.|...+..++|++++++|+|+++.+++.||.|||+|+||+|+||||++++||+|||+.+++..++++
T Consensus 633 ~~q~~P~P~y~~d~~l~~~~~~~pl~~~la~~~~~~~lv~~iV~EKE~rlKE~MkiMGL~~~~~w~sWfi~~~~~~~i~~ 712 (2272)
T TIGR01257 633 YLQQMPYPCFVDDSFMIILNRCFPIFMVLAWIYSVSMTVKSIVLEKELRLKETLKNQGVSNAVIWCTWFLDSFSIMSMSI 712 (2272)
T ss_pred eeeeCCCCCeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999998888877
Q ss_pred HHHHHH-HhcccccccChhhhHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhhhcc--cCCCchhHHhH
Q 000224 344 GIITAC-TMDSLFKYSDKTVVFTYFFSFGLSAITLSFFISTFFARAKTAVAVGTLSFLGAFFPYYTV--NDEAVPMVLKV 420 (1833)
Q Consensus 344 ~i~~~~-~~~~~f~~s~~~~~f~~~~l~~~s~i~~~f~iS~fF~~~~~a~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~ 420 (1833)
++++++ ....+|++||++++|+++++|++++|+||||+|+||+|+++|+++++++||++++|+++. .....+...++
T Consensus 713 ~l~~~il~~~~~~~~s~~~~lfl~~~~y~~s~I~~~fliS~fFska~~A~~~~~li~f~~~lp~~~~~~~~~~~~~~~~~ 792 (2272)
T TIGR01257 713 FLLTIFIMHGRILHYSDPFILFLFLLAFSTATIMQCFLLSTFFSKASLAAACSGVIYFTLYLPHILCFAWQDRMTADLKT 792 (2272)
T ss_pred HHHHHHHhhCceeecCChHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhcccccCHHHHH
Confidence 776654 356799999999999999999999999999999999999999999999999999998632 33445667899
Q ss_pred HHhhhchhHHHHHHHHHHHHhhccCCccccccccCC---CCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcccccc
Q 000224 421 IASLLSPTAFALGSVNFADYERAHVGLRWSNMWRAS---SGVNFLVCLLMMLLDTLLYGVIGLYLDKVLPKENGVRYRWN 497 (1833)
Q Consensus 421 ~~sl~~~~a~~~~~~~~~~~e~~~~g~~~~~~~~~~---~~~~~~~~~~~l~~~~~ly~~l~~yld~v~p~~~G~~~p~~ 497 (1833)
++||+||+||++|+..++.+|.++.|++|+|++..+ ++++++.+++||++|+++|++|+||+|+|+|++||+++|||
T Consensus 793 ~~sL~sp~af~~g~~~i~~~e~~~~G~~w~n~~~~~~~~d~~s~~~~~~ml~~d~~lY~lL~~Yld~V~PgeyG~~kpw~ 872 (2272)
T TIGR01257 793 AVSLLSPVAFGFGTEYLVRFEEQGLGLQWSNIGNSPLEGDEFSFLLSMKMMLLDAALYGLLAWYLDQVFPGDYGTPLPWY 872 (2272)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhhCCCcccccccccccCCCCccHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCcc
Confidence 999999999999999999999999999999998643 45789999999999999999999999999999999999999
Q ss_pred ccccccccCccccccccccchhHHhhhhhhhhhhhhhccc-cCcchhhhhhhhccccccCcceEEEEeeEEEecCCCCcc
Q 000224 498 FIFQNCFRRKKSVIKHHVSSAEVKINKKLSKEKECAFALD-ACEPVVEAISLDMKQQEVDGRCIQIRKLHKVYATKRGNC 576 (1833)
Q Consensus 498 f~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~i~i~~l~k~y~~~~~~~ 576 (1833)
|||+++||+++........ ......+...++.......+ ..+..+|+. ..+ ....|+++||+|.|++ +++
T Consensus 873 F~~~~syW~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~-----~~~-~~~~L~I~nLsK~y~~--~~k 943 (2272)
T TIGR01257 873 FLLQESYWLGGEGCSTREE-RALEKTEPLTEEMEDPEHPEGINDSFFERE-----LPG-LVPGVCVKNLVKIFEP--SGR 943 (2272)
T ss_pred cccchhhhcCCcccccccc-cccccccccccccccccccccccccccccc-----cCC-CCceEEEEeEEEEecC--CCc
Confidence 9999999976532110000 00000000000000000000 000011111 111 1257999999999953 235
Q ss_pred cceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcceEEEccCCCCCCCCCHHHH
Q 000224 577 CAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREH 656 (1833)
Q Consensus 577 ~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~ 656 (1833)
.||+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..+..++|+.+|+|||++.+++.+||+||
T Consensus 944 ~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~ 1023 (2272)
T TIGR01257 944 PAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEH 1023 (2272)
T ss_pred eEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHH
Confidence 69999999999999999999999999999999999999999999999999977777788999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHH
Q 000224 657 LEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQL 736 (1833)
Q Consensus 657 l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~ 736 (1833)
+.++++++|.+.++.+++++++++.+||.++.++++++|||||||||+|||||+++|+||||||||+||||.+|+.+|++
T Consensus 1024 L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~l 1103 (2272)
T TIGR01257 1024 ILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDL 1103 (2272)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHH
Confidence 99999999887777788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhCCcEEEEEEecCC-------------------
Q 000224 737 IKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKSAP------------------- 797 (1833)
Q Consensus 737 l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~~g~gy~l~~~~~~~------------------- 797 (1833)
|+++++|+|||++||++++++.+||||++|++|+++|.|++.+||++||.||++++.+...
T Consensus 1104 L~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~g~gy~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1183 (2272)
T TIGR01257 1104 LLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFYLTLVRKMKNIQSQRGGCEGTCSCTSKG 1183 (2272)
T ss_pred HHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhcCCcEEEEEEecccccccccccccccccccccc
Confidence 9999889999999999999999999999999999999999999999999999999976430
Q ss_pred --------------------ChhhHHHHHHHhCCCceEEeeeCcEEEEEecCCCc--chHHHHHHHHHHhhhhccccccc
Q 000224 798 --------------------DASAAADIVYRHIPSALCVSEVGTEITFKLPLASS--SSFESMFREIESCIRKSVSKVEA 855 (1833)
Q Consensus 798 --------------------~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~le~~~~~~~~~~~~ 855 (1833)
+.+.+.+++++++|++.+.++.+.+++|.+|.+.. ..|+.+|++||+..
T Consensus 1184 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~iP~a~l~~~~g~el~y~LP~~~~~~~~f~~lf~~Le~~~--------- 1254 (2272)
T TIGR01257 1184 FSTRCPARVDEITPEQVLDGDVNELMDLVYHHVPEAKLVECIGQELIFLLPNKNFKQRAYASLFRELEETL--------- 1254 (2272)
T ss_pred cccccccccccccccccccccHHHHHHHHHHhCCCcEEEeccCCEEEEEecccccccchHHHHHHHHHhhH---------
Confidence 23456778899999999999999999999999875 46999999999753
Q ss_pred cccccccCCCeeEEEecCCChHHHHHHHhcCCCcchh----hhhhccccccccc-c-ccccCCCCccccccc-cccCCcc
Q 000224 856 DATEDTDYLGIESFGISVTTLEEVFLRVAGCNLDESE----CISQRNNLVTLDY-V-SAESDDQAPKRISNC-KLFGNYK 928 (1833)
Q Consensus 856 ~~~~~~~~~~i~~~~~s~~tlE~vfl~~~~~~~~~~~----~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~-~~~~~~~ 928 (1833)
+++||.+|++|.|||||||||++++...+.. ............. . ......+.+...... .......
T Consensus 1255 ------~~lgi~sygis~tTLEeVFlkv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1328 (2272)
T TIGR01257 1255 ------ADLGLSSFGISDTPLEEIFLKVTEDADSGSLFAGGAQQKRENANLRHPCSGPTEKAGQTPQASHTCSPGQPAAH 1328 (2272)
T ss_pred ------hhCCCceEEeecCCHHHHHHHhhhhccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4799999999999999999999875432110 0000000000000 0 000000000000000 0000000
Q ss_pred cccceeeeeecchhhhhhHHhhhhhhhhcccccccccccchhHHHHHHHHHHHHHhHhccchhHHHHHHHHHHHHHHHHH
Q 000224 929 WVFGFIVTVVQRACTLIVAAVLGFLNFLIKKCCTCCIISRSMFWQHCKALFIKRAVSARRDRKTIVFQLLIPAIFLLVGL 1008 (1833)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~al~~Kr~~~~~R~~~~~~~~l~lP~~~~~~~l 1008 (1833)
........ ..........+..+++||++||++||+++++|||+.+++|+++|++++++++
T Consensus 1329 -------~~~~~~~~-------------~~~~~~~~~tg~~L~~qQf~All~KR~~~~~Rd~k~~~~qillPi~fv~lal 1388 (2272)
T TIGR01257 1329 -------PEGQPPPE-------------PEDPGVPLNTGARLILQHVQALLVKRFQHTIRSHKDFLAQIVLPATFVFLAL 1388 (2272)
T ss_pred -------cccccccc-------------ccccccccccchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 00000000 0000011234677899999999999999999999999999999999999999
Q ss_pred HHHhccCC-CCCCccccccccCCCccCCC-CC--------------------CCCc---------ccccCchh-----hh
Q 000224 1009 LFLKLKPH-PDMLSVTFTTSNFNPLLSGG-GG--------------------GGPI---------PFDLSWPI-----AN 1052 (1833)
Q Consensus 1009 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~-~~--------------------~~~~---------~~~~~~~~-----~~ 1052 (1833)
++....+. .+.|++.++++.|....... .. +... +.....+. ..
T Consensus 1389 ~~~~~~~~~~~~p~l~Ls~~~Y~~~~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1468 (2272)
T TIGR01257 1389 MLSIIIPPFGEYPALTLHPWMYGQQYTFFSMDEPNSEHLEVLADVLLNKPGFGNRCLKEEWLPEYPCGNSTPWKTPSVSP 1468 (2272)
T ss_pred HHHhhcccccCCCCeecchhhccCcceeccccccccccccchhhhhhcccccccccccccccccccccccccccccchhH
Confidence 88876543 45677888877663221100 00 0000 00000000 00
Q ss_pred hhhhhhc-CCcccccccCCCCCCCh--HHHHHHHHHh-cCCC---C---------cchhhchhHHHHHhhhhcc------
Q 000224 1053 EVSKYIQ-GGWIQRFKQSSYRFPNA--EKALADAVDA-AGPT---L---------GPVLLSMSEYLMSSFNESY------ 1110 (1833)
Q Consensus 1053 ~~~~~~~-~~~~~~~~~~~~~~~~~--~~~l~~~~~~-~~~~---~---------~~~~~~~~~~l~~~~~~~~------ 1110 (1833)
.+...+. ..|..........+... .....++... .+.. . .....++++|+...++...
T Consensus 1469 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~n~sdyll~~~~~~~~~~~~~ 1548 (2272)
T TIGR01257 1469 NITHLFQKQKWTAAHPSPSCRCSTREKLTMLPECPEGAGGLPPPQRTQRSTEILQDLTDRNISDFLVKTYPALIRSSLKS 1548 (2272)
T ss_pred HHHHHHhhccccccccccccccccccccccccccccccccCCCcccccccchhhhhhcccchHHHHhhhhhhhhcccccc
Confidence 0000000 00000000000000000 0000000000 0000 0 0011245666654433211
Q ss_pred -----cceecEEEeecc------------------------------------------CCCCceeEEEEeCCCCCChHH
Q 000224 1111 -----QSRYGAIVMDDQ------------------------------------------NDDGSLGFTVLHNSSCQHAGP 1143 (1833)
Q Consensus 1111 -----~~~~~~~~~~~~------------------------------------------~~~~~~~~~~~~n~~~~hs~p 1143 (1833)
..|||++..+.. +.++...+++|||++++|++|
T Consensus 1549 ~~~~~~~ry~~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vwfNn~~~Hs~p 1628 (2272)
T TIGR01257 1549 KFWVNEQRYGGISIGGKLPAIPITGEALVGFLSDLGQMMNVSGGPVTREASKEMPDFLKHLETEDNIKVWFNNKGWHALV 1628 (2272)
T ss_pred ccccccccccccccccccccccccchhhhhhhhhcccccccccccccccccchhhhhhhccccCcceEEEEcCCcccHHH
Confidence 134443321100 001123468999999999999
Q ss_pred HHHHHHHHHHHHHhcCC----CcceEEEEeecCCCchhhhhhh---cchhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHh
Q 000224 1144 TFINVMNTAILRLATGN----RNMTIRTRNHPLPTTQSQQLQR---HDLDAFSVSIIISIAFSFIPASFAVAIVKEREVK 1216 (1833)
Q Consensus 1144 ~~ln~~~nailr~~~~~----~~~~I~~~~~Plp~~~~~~~~~---~~~~~~~~~~~i~~~~s~i~a~f~~~~V~ER~~k 1216 (1833)
.++|+++||++|...++ .+.+|++.|||+|.+..+.... ........++++.++|+|+|++|++++|+||++|
T Consensus 1629 ~~lN~l~NaiLr~~~~~~~~~~~~~I~v~N~Plp~t~~~~~~~~~~~~~~~~~iai~ii~~~sfi~asfv~~~V~ER~sk 1708 (2272)
T TIGR01257 1629 SFLNVAHNAILRASLPKDRDPEEYGITVISQPLNLTKEQLSEITVLTTSVDAVVAICVIFAMSFVPASFVLYLIQERVNK 1708 (2272)
T ss_pred HHHHHHHHHHHHHhcccccCCccceEEEEecCCCCchhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHheeeehHHhhh
Confidence 99999999999997542 3578999999999876442211 1223445678899999999999999999999999
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCchHHHHHHHHHHHHHHHHHHHhhhhhccCc
Q 000224 1217 AKQQQLISGVSVLSYWTSTYIWDFISFLFPSSCAIILFYIFGLDQFVGRGCLLPTVLIFLGYGLAIASSTYCLTFFFSDH 1296 (1833)
Q Consensus 1217 ~k~lq~vsGv~~~~YW~s~~l~D~i~~li~~~~~iii~~~f~~~~~~~~~~~~~~~ll~llyG~a~i~~~Yl~Sf~f~~~ 1296 (1833)
+||+|++||+++.+||+++|+||++.|+++++++++++++|+.+.|.+...++.+++++++||+|++|++|++||+|+++
T Consensus 1709 aK~lQ~vSGv~~~~YWls~fl~D~~~y~i~~~~~i~i~~~f~~~~~~~~~~l~~~~lll~lyG~a~ip~tYl~SflF~~~ 1788 (2272)
T TIGR01257 1709 AKHLQFISGVSPTTYWLTNFLWDIMNYAVSAGLVVGIFIGFQKKAYTSPENLPALVALLMLYGWAVIPMMYPASFLFDVP 1788 (2272)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHhhhcccchhhhhHHHHHHHhhhc------ccCCCCCC
Q 000224 1297 TMAQNVVLLVHFFTGLILMVISFIMGLLEA---TRSANSLLKNFFRLSPGFCFADGLASLALLRQG------MKDKTSDG 1367 (1833)
Q Consensus 1297 ~~a~~~~~~i~~~~g~~~~i~~~il~~~~~---~~~~~~~l~~~f~l~P~~~l~~gl~~l~~~~~~------~~~~~~~~ 1367 (1833)
.+|+..+.++++++|++.+++.+++..... ....+..++++|+++|.||++.|+..+...... .......+
T Consensus 1789 ~~A~~~~~~in~~~G~~~~i~~~il~~~~~~~~~~~~~~~l~~if~i~P~f~lg~gl~~l~~~~~~~~~~~~~~~~~~~~ 1868 (2272)
T TIGR01257 1789 STAYVALSCANLFIGINSSAITFVLELFENNRTLLRFNAMLRKLLIVFPHFCLGRGLIDLALSQAVTDVYAQFGEEHSAN 1868 (2272)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHeeCchhhhHHHHHHHHHhHHHHHHHHhhcccccCC
Confidence 999999999999999999988888876532 344577889999999999999999988754311 11122346
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHhccCcchhhhhHhhhhccccccccCCCCCCCcccccCCCCCCcCCCCCChh
Q 000224 1368 VFDWNVTSASICYLGCESICYFLLTLGLELLPSHKWTLMTIKEWWKGTRHRLCNTPSSYLEPLLQSSSESDTLDLNEDID 1447 (1833)
Q Consensus 1368 ~~~~~~~g~~i~~l~~~~i~~~lL~l~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~d 1447 (1833)
+++|+..|..++||++++++|+++++++|+.... .+ |... . .+ ....+||+|
T Consensus 1869 ~~~~~~~g~~ll~m~~~~iv~flLl~~ie~~~~~-------~~-~~~~--------~---~~---------~~~~~eD~D 1920 (2272)
T TIGR01257 1869 PFQWDLIGKNLVAMAVEGVVYFLLTLLIQHHFFL-------SR-WIAE--------P---AK---------EPIFDEDDD 1920 (2272)
T ss_pred ccchhhccHHHHHHHHHHHHHHHHHHHHHhhhhh-------hh-hccc--------c---Cc---------CcCCCchhH
Confidence 7899999999999999999999999999963210 00 1000 0 00 001268999
Q ss_pred hHHHHhhcccCCCCcceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEE
Q 000224 1448 VQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTA 1527 (1833)
Q Consensus 1448 V~~E~~rv~~~~~~~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i 1527 (1833)
|.+||.||.+....+.+|+++||+|+|+++ ++.||+|+||+|++|||+||+||||||||||+|||+|+++|++|+|
T Consensus 1921 V~~Er~rV~~~~~~~~~L~v~nLsK~Y~~~----~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I 1996 (2272)
T TIGR01257 1921 VAEERQRIISGGNKTDILRLNELTKVYSGT----SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDA 1996 (2272)
T ss_pred HHHHHHHHhccCCCCceEEEEEEEEEECCC----CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEE
Confidence 999999998766667799999999999631 3569999999999999999999999999999999999999999999
Q ss_pred EEcCeeCCCChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHH
Q 000224 1528 FIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNK 1607 (1833)
Q Consensus 1528 ~i~G~~i~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~k 1607 (1833)
+++|+++.....+.+++||||||++.+++.+|++||+.++++++|.++++.++.++++++.++|.+++++++++||||||
T Consensus 1997 ~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqK 2076 (2272)
T TIGR01257 1997 TVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNK 2076 (2272)
T ss_pred EECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHH
Confidence 99999997655567788999999999999999999999999999988776777888999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecCh
Q 000224 1608 RKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1687 (1833)
Q Consensus 1608 qrl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~ 1687 (1833)
|||+||+||+++|+||||||||+||||.+|+.+|+.|+++++ +| +|||+|||+|+|++++||||++|++|+++|.|++
T Consensus 2077 qRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~-~g-~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~ 2154 (2272)
T TIGR01257 2077 RKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIR-EG-RAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTI 2154 (2272)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999864 44 6899999999999999999999999999999999
Q ss_pred hHHHhhcCCeEEEEEeecCCccc---cHHHHHHHHHhhcccCCcchhhhhhhhhhhhccccccccCCCceeeecch----
Q 000224 1688 QHLKTRFGNFLELEVKPTEVSSV---DLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSENATAAEISLS---- 1760 (1833)
Q Consensus 1688 ~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 1760 (1833)
++++++++.+|.++++....... +.+.+..++...+.... ..+. ........+.
T Consensus 2155 q~Lk~~~g~g~~l~i~~~~~~~~~~~~~~~v~~~i~~~fp~a~-----~~e~--------------~~~~l~~~i~~~~~ 2215 (2272)
T TIGR01257 2155 QHLKSKFGDGYIVTMKIKSPKDDLLPDLNPVEQFFQGNFPGSV-----QRER--------------HYNMLQFQVSSSSL 2215 (2272)
T ss_pred HHHHHHhCCceEEEEEEcCcchhhhhHHHHHHHHHhhcCccce-----eecc--------------ccceEEEEeCcccH
Confidence 99999999999888875432211 12223333333221110 0000 0001111111
Q ss_pred HHHHHHHHHhhccccceeEeEecCCChhhHHHHhhcccccccCC
Q 000224 1761 QEMLLIVGRWLGNEERIKTLISSSSSPDRIFGEQLSEQLVRDGT 1804 (1833)
Q Consensus 1761 ~~~~~~~~~~~~~~~~~~~~~~~~~sl~~vf~~~t~~~~~~~~~ 1804 (1833)
.+.+..+.+ ...+..|.++.+.++||||||+++++++-.+++.
T Consensus 2216 ~~if~~L~~-~k~~l~I~dysvsqtSLE~VFl~l~~~q~~~~~~ 2258 (2272)
T TIGR01257 2216 ARIFQLLIS-HKDSLLIEEYSVTQTTLDQVFVNFAKQQTETYDL 2258 (2272)
T ss_pred HHHHHHHHh-cCCCCCeEEEEcCCCCHHHHHHHHhccccccCCC
Confidence 222222222 1135678999999999999999999998775533
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-83 Score=862.85 Aligned_cols=856 Identities=34% Similarity=0.525 Sum_probs=609.0
Q ss_pred HHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhCCcEEEEEEecCCChhhHHHHHHHhCCCceEEe
Q 000224 738 KKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKSAPDASAAADIVYRHIPSALCVS 817 (1833)
Q Consensus 738 ~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~~g~gy~l~~~~~~~~~~~~~~~~~~~~p~~~~~~ 817 (1833)
++.|+||||++ +|||++|.+|+++ ++.+||+++|.||+++++. .....+.+++|++++..
T Consensus 2 ~~~k~~R~i~~-----------~Dri~i~s~g~l~---s~~~lk~~~g~gy~l~l~~------~~~~~~~~~~p~~~~~~ 61 (885)
T KOG0059|consen 2 ERRKEGRTIIL-----------GDRIVIMSHGKLK---SSLFLKRKLGSGYHLTLVL------QVTLFIQQHIPDARLVE 61 (885)
T ss_pred cccccCCEEEE-----------ecceeheeCCeec---cchHHHHhhCCCceEEeHH------HHHHHHHhhCccceecc
Confidence 45678999999 9999999999999 9999999999999999977 56778899999998887
Q ss_pred eeCcEEEEEecCCCcchHHHHHHHHHHhhhhccccccccccccccCCCeeEEEecCCChHHHHHHHhcCCCcchhhhhhc
Q 000224 818 EVGTEITFKLPLASSSSFESMFREIESCIRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFLRVAGCNLDESECISQR 897 (1833)
Q Consensus 818 ~~~~~~~~~~p~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~tlE~vfl~~~~~~~~~~~~~~~~ 897 (1833)
.. +..+.+|......+ .+..+ .++.+|+++.||+||||+++.++.....+
T Consensus 62 ~~--~~~~~lp~~~~~~~--~~~~l---------------------~~~~~~~~~~t~l~~vfl~~~~~~~~~~~----- 111 (885)
T KOG0059|consen 62 CP--KLVYLLPLKYRREF--LFRGL---------------------DLIASFGVSLTTLEEVFLKLGGESDSLEN----- 111 (885)
T ss_pred cc--cccccCChhccccc--hhhhh---------------------hcccccccccccHHHHHhhcccccccccc-----
Confidence 76 88888887665433 11111 11788999999999999999764321111
Q ss_pred cccccccccccccCCCCccccccccccCCcccccceeeeeecchhhhhhHHhhhhhhhhcccccccccccchhHHHHHHH
Q 000224 898 NNLVTLDYVSAESDDQAPKRISNCKLFGNYKWVFGFIVTVVQRACTLIVAAVLGFLNFLIKKCCTCCIISRSMFWQHCKA 977 (1833)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~a 977 (1833)
+. ..++ ..+...+.+|+.+
T Consensus 112 ------~~----~~~~---------------------------------------------------~~~~~~~~~~~~~ 130 (885)
T KOG0059|consen 112 ------DS----TEDQ---------------------------------------------------VSGPAKAYTQFQA 130 (885)
T ss_pred ------cc----cccc---------------------------------------------------cchhHHhhhhHHH
Confidence 00 0000 0145677899999
Q ss_pred HHHHHHhHhccchhHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccccCCCccCCCCCCCCcccccCchhhhhhhhh
Q 000224 978 LFIKRAVSARRDRKTIVFQLLIPAIFLLVGLLFLKLKPHPDMLSVTFTTSNFNPLLSGGGGGGPIPFDLSWPIANEVSKY 1057 (1833)
Q Consensus 978 l~~Kr~~~~~R~~~~~~~~l~lP~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1057 (1833)
+.+||++..+|+|+.+..++.+|.+++.+++... .+ ..++++..+...... ..++.|... .....
T Consensus 131 ~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~--~~~~~~~~~------~~~~~ 195 (885)
T KOG0059|consen 131 LLRKRFLPLRRNWRLFLAQLLLPSIFVVLALVFS--DP-----HLTLSPSLYGALYTN--YSGEINTEE------FLSVL 195 (885)
T ss_pred HHHHhhhhhhhhhhhHHHHHhhHHHHHHHHHhcc--Cc-----cccCCccccceeeec--CCccCCccH------HHHhh
Confidence 9999999999999999999999999988877665 11 111111111000000 001111100 00000
Q ss_pred hcCCcccccccCCCCCCChHHHHHHHHHhcCCCCcchhhchhHHHHHhhhhcccceecEEEee----ccCCCCceeEEEE
Q 000224 1058 IQGGWIQRFKQSSYRFPNAEKALADAVDAAGPTLGPVLLSMSEYLMSSFNESYQSRYGAIVMD----DQNDDGSLGFTVL 1133 (1833)
Q Consensus 1058 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 1133 (1833)
.. . .... +....+.+ ...+. ..+ .+....+....+ ...........+|
T Consensus 196 ~~-----~--~~~~---~~~~~~~~-----------~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 247 (885)
T KOG0059|consen 196 EA-----N--GKGR---NLSLALNN-----------INTEV-----DNF--TVDNWTESSSKNKGDMLGRDLKDVRVSVL 247 (885)
T ss_pred hc-----c--cccc---hhhhhhhc-----------chhhh-----eee--eecceeccccccchhhhcCccccceEEEe
Confidence 00 0 0000 00000000 00000 000 000000011100 0112233567899
Q ss_pred eCCCCCChHHHHHHHHHHHHHHHhcCCCcceEEEEeecCCCchhhhhhhcchhhhHHHHHHHHHHHHHhhHhHHHHHHHH
Q 000224 1134 HNSSCQHAGPTFINVMNTAILRLATGNRNMTIRTRNHPLPTTQSQQLQRHDLDAFSVSIIISIAFSFIPASFAVAIVKER 1213 (1833)
Q Consensus 1134 ~n~~~~hs~p~~ln~~~nailr~~~~~~~~~I~~~~~Plp~~~~~~~~~~~~~~~~~~~~i~~~~s~i~a~f~~~~V~ER 1213 (1833)
+|+...|+.|..+|+.+|++++...... |.+.++|+|.+..+...... ..+..+.++.+.++++++.++++.+.||
T Consensus 248 ~n~k~~~~~~~~~~~~~n~l~~~~~~~~---i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~e~ 323 (885)
T KOG0059|consen 248 FNNKGLHTLPFLLGLGSNALRRALNLSG---ISVLNEPMPLSGAQLSLDLL-ADLLGALFLLFVFLLLFSVFLLSLILER 323 (885)
T ss_pred eehhhhhhHHHhcchHHHHHHHhhcccc---ceeeecCcCccHhhhhhhhh-hHHHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 9999999999999999999998875544 88999999987755432221 4566788889999999999999999999
Q ss_pred HHhHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCchHHHHHHHHHHHHHHHHHHHhhhhhc
Q 000224 1214 EVKAKQQQLISGVSVLSYWTSTYIWDFISFLFPSSCAIILFYIFGLDQFVGRGCLLPTVLIFLGYGLAIASSTYCLTFFF 1293 (1833)
Q Consensus 1214 ~~k~k~lq~vsGv~~~~YW~s~~l~D~i~~li~~~~~iii~~~f~~~~~~~~~~~~~~~ll~llyG~a~i~~~Yl~Sf~f 1293 (1833)
..++||+|.++|+++.+||+++++||++.|++++++..+++.+|+ +........+++++++|+++++|++|+.|+.|
T Consensus 324 ~~~~~~~~~i~G~~~~~yw~~~~~~d~~~~~l~~~~~~~~~~~f~---~~~~~~~~~~~~~~~l~~~s~i~l~y~~s~~f 400 (885)
T KOG0059|consen 324 QQRLRHQQLIAGLSPSTYWLFALVWDLLLYLLILLILLIFVLIFG---FFAGNNTVIILLLLLLYIRSAIPLTYILSFIF 400 (885)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhheee---cccccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999987 66667788889999999999999999999999
Q ss_pred cCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHhhhcc-cchhhhhHHHHHHHhh-hcccCC-----
Q 000224 1294 SDHTMAQNVVLLVHFFTGLILMVISFIMGLLEA---TRSANSLLKNFFRLS-PGFCFADGLASLALLR-QGMKDK----- 1363 (1833)
Q Consensus 1294 ~~~~~a~~~~~~i~~~~g~~~~i~~~il~~~~~---~~~~~~~l~~~f~l~-P~~~l~~gl~~l~~~~-~~~~~~----- 1363 (1833)
+.+.++.....+.+++.|+...++.+++..... .......+...|.++ |.++++.+........ .++...
T Consensus 401 ~~~~~~~v~~~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 480 (885)
T KOG0059|consen 401 SKESTASVILSIYNLISGLLVFFAVFILQSFANGRTGDIFSMILVPGFTLFLPLYELSSLAAEGNLNLNDGMSLEVLGND 480 (885)
T ss_pred cCCcCceeehhhHHHHHHHHHHHHHhhhhhcccccHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcchhhhhhhhhccc
Confidence 999999999888888888765555554443322 122334455556555 8888888877765331 111100
Q ss_pred -C-CCCcccccc--chhhHHHHHHHHHHHHHHHHHHHhccCcchhhhhHhhhhccccccccCCCCCCCcccccCCCCCCc
Q 000224 1364 -T-SDGVFDWNV--TSASICYLGCESICYFLLTLGLELLPSHKWTLMTIKEWWKGTRHRLCNTPSSYLEPLLQSSSESDT 1439 (1833)
Q Consensus 1364 -~-~~~~~~~~~--~g~~i~~l~~~~i~~~lL~l~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1439 (1833)
. ....+.|.. .+....++..++++++++.+.++.. +.+..... .+. ......
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~-------------~~~~~~~~-------~~~----~~~~~~ 536 (885)
T KOG0059|consen 481 ESFYTLLLEWLLPLIGRRYLALVTEGVKDDLFFLLIFVP-------------FKRRMRAL-------TQN----MLKGFE 536 (885)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------------hccccccc-------ccc----ccCCCc
Confidence 0 111234555 3334455666666655555443321 00000000 000 000011
Q ss_pred CCCCCChhhHHHHhhcccCCCC---cceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHH
Q 000224 1440 LDLNEDIDVQVERNRVLSGSVD---NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMI 1516 (1833)
Q Consensus 1440 ~~~~ed~dV~~E~~rv~~~~~~---~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l 1516 (1833)
....||.||.+||+++...... ...+.+++|+|.|+... . |++++||.|++|||+|++|||||||||+++||
T Consensus 537 ~~~~e~~~v~~e~~~v~~~~~~~~~~~~~~~~~L~k~y~~~~----~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~ml 611 (885)
T KOG0059|consen 537 PVEVEKLDVARERNRVETLLFRSSYSSALVLNNLSKVYGGKD----G-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKML 611 (885)
T ss_pred CcchhhHHHHHHHHhhhhhhhcccccceEEEcceeeeecchh----h-hhcceEEEecCCceEEEecCCCCCchhhHHHH
Confidence 1236789999999887654332 36799999999997521 2 99999999999999999999999999999999
Q ss_pred hCCCCCCceEEEEcCeeCCCCh--HHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccc
Q 000224 1517 SGEEYPTDGTAFIFGKDIRSDP--KAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKH 1594 (1833)
Q Consensus 1517 ~Gl~~p~~G~i~i~G~~i~~~~--~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~ 1594 (1833)
+|+.+|++|+++++|.++.... .++++.||||||++++++.+|+||||.++++++|+++.++++.++++++.++|.++
T Consensus 612 tG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~ 691 (885)
T KOG0059|consen 612 TGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPY 691 (885)
T ss_pred hCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhh
Confidence 9999999999999999998743 45899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEE
Q 000224 1595 AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIG 1674 (1833)
Q Consensus 1595 ~~~~~~~LSgG~kqrl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~ 1674 (1833)
++++++.|||||||||++|.|++++|++++|||||+||||.+||.+|++|++++ ++|+ +||+|||+|||||++|||++
T Consensus 692 ~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~-k~g~-aiiLTSHsMeE~EaLCtR~a 769 (885)
T KOG0059|consen 692 ANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLR-KNGK-AIILTSHSMEEAEALCTRTA 769 (885)
T ss_pred hccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHH-hcCC-EEEEEcCCHHHHHHHhhhhh
Confidence 999999999999999999999999999999999999999999999999999986 4554 89999999999999999999
Q ss_pred EEECCEEEEecChhHHHhhcCCeEEEEEeecCCccccHHHHHHHHHhhcccCCcchhhhhhhhhhhhccccccccCCCce
Q 000224 1675 IMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSENATA 1754 (1833)
Q Consensus 1675 im~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1754 (1833)
||.+|+++|.|+++|||++||.+|.++++..+..+. +.+.+.+++.+.......+. . ..-.++....
T Consensus 770 Imv~G~l~ciGs~q~LKsrfG~gy~l~~~~~~~~~~--~~v~~~~~~~~p~a~~~~~~-----~----~~~~~~ip~~-- 836 (885)
T KOG0059|consen 770 IMVIGQLRCIGSPQELKSRYGSGYTLTVRIKELPEV--SEVEKLLQNRFPGAVLKERH-----A----GLLAFEIPKD-- 836 (885)
T ss_pred eeecCeeEEecChHHHHhhcCCcEEEEEEECCCccc--chHHHHHHHhCCCcchhhhh-----h----ceEEEEcccc--
Confidence 999999999999999999999999999887653322 44555555544332111100 0 0000000000
Q ss_pred eeecchHHHHHHHHHhhccccceeEeEecCCChhhHHHHhhccccc
Q 000224 1755 AEISLSQEMLLIVGRWLGNEERIKTLISSSSSPDRIFGEQLSEQLV 1800 (1833)
Q Consensus 1755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~vf~~~t~~~~~ 1800 (1833)
+.......+..+.. ....-++.+....+.+|||||++...++-.
T Consensus 837 -~~~~~~~vF~~le~-~~~~~~i~dyslsq~tLe~VFi~~a~~q~~ 880 (885)
T KOG0059|consen 837 -EVVSLSEVFLALEK-AKESFGIEDYSLSQTTLEDVFLILAKTQED 880 (885)
T ss_pred -hhhHHHHHHHHHHH-HHHhcCHHHHHHHHhhHHHHHHHHhccccc
Confidence 00000122222222 223557788999999999999999876544
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-79 Score=787.61 Aligned_cols=224 Identities=28% Similarity=0.455 Sum_probs=195.9
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHHhhc
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 636 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~ 636 (1833)
..|+++||+++|++++ +..+|+|+||+|++||.++|+|||||||||++++|.+++.|++|+|.|+|.|+.. +.+++|.
T Consensus 349 g~ief~nV~FsYPsRp-dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~ 427 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSRP-DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRS 427 (1228)
T ss_pred cceEEEEEEecCCCCC-cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHh
Confidence 4699999999999885 6789999999999999999999999999999999999999999999999999974 8889999
Q ss_pred ceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-------CCccccc----ccCCCChhHHHHHHH
Q 000224 637 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVG-------LADKVNI----VVRALSGGMKRKLSL 705 (1833)
Q Consensus 637 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~-------L~~~~~~----~~~~LSgGqkqrl~l 705 (1833)
+||+|.|+|+||. .|++||+.++. + +.-++++.++.+..+ |++..++ +.-+||||||||+||
T Consensus 428 ~iglV~QePvlF~-~tI~eNI~~G~-----~-dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAI 500 (1228)
T KOG0055|consen 428 QIGLVSQEPVLFA-TTIRENIRYGK-----P-DATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAI 500 (1228)
T ss_pred hcCeeeechhhhc-ccHHHHHhcCC-----C-cccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHH
Confidence 9999999999986 59999999852 1 122334444443332 3333333 334799999999999
Q ss_pred HHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhC
Q 000224 706 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 785 (1833)
Q Consensus 706 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~~g 785 (1833)
||||+.+|+|||||||||+||+++++.+.++|++.++|||.|+++|++.++.. ||+|++|++|++++.|++++|.+.-|
T Consensus 501 ARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-aD~I~v~~~G~IvE~G~h~ELi~~~G 579 (1228)
T KOG0055|consen 501 ARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQGTHDELIALGG 579 (1228)
T ss_pred HHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-cCEEEEEECCEEEEecCHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999998 99999999999999999999988776
Q ss_pred CcEEE
Q 000224 786 VGYTL 790 (1833)
Q Consensus 786 ~gy~l 790 (1833)
..+.+
T Consensus 580 ~Y~~l 584 (1228)
T KOG0055|consen 580 IYSSL 584 (1228)
T ss_pred hHHHH
Confidence 55443
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-77 Score=727.70 Aligned_cols=225 Identities=27% Similarity=0.467 Sum_probs=201.1
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCC----cceEEEcCccCCc----
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPT----TGDALVFGKNITA---- 629 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~----~G~i~i~g~~i~~---- 629 (1833)
..++++||++.|....+...||+|+||++.+||++||+|++||||||+.+.|.|++++. +|+|.++|.|+..
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 36999999999987755568999999999999999999999999999999999999987 8999999998743
Q ss_pred cHHHhh-cceEEEccCC--CCCCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCCcccc--cccCCCChhHHHHH
Q 000224 630 DMDEIR-KGLGVCPQYD--ILFPELTVREHLEMFAVLKG-VKEELLESVVAEMVDEVGLADKVN--IVVRALSGGMKRKL 703 (1833)
Q Consensus 630 ~~~~~r-~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~~-~~~~~~~~~v~~~l~~~~L~~~~~--~~~~~LSgGqkqrl 703 (1833)
.+..+| +.|+++||++ .|.|-+|+.+.+.-....++ ...++.++++.++|+.+||++... +++++||||||||+
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv 163 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV 163 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH
Confidence 334445 6799999998 46777999999976666554 558889999999999999997655 49999999999999
Q ss_pred HHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 704 SLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 704 ~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~--~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
.||+||+.+|++||+||||++||+..+.++.++|++++ .|.++|+||||++.+..+||||+||.+|++++.|+++++.
T Consensus 164 ~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~ 243 (539)
T COG1123 164 MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEIL 243 (539)
T ss_pred HHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999999995 4999999999999999999999999999999998875554
Q ss_pred h
Q 000224 782 H 782 (1833)
Q Consensus 782 ~ 782 (1833)
+
T Consensus 244 ~ 244 (539)
T COG1123 244 S 244 (539)
T ss_pred h
Confidence 3
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-75 Score=812.42 Aligned_cols=833 Identities=19% Similarity=0.229 Sum_probs=507.7
Q ss_pred CcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCC----CCCcceEEEcCccCCccHHHhhcceEEEccCCCCCC
Q 000224 574 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLI----PPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFP 649 (1833)
Q Consensus 574 ~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~----~p~~G~i~i~g~~i~~~~~~~r~~ig~~~Q~~~l~~ 649 (1833)
.++.+|+|+|+++++||+++|+||||||||||+|+|+|+. +|++|+|.++|.++.......|+.+|||+|++.+++
T Consensus 72 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred CcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence 3467999999999999999999999999999999999996 579999999999875333345677999999999999
Q ss_pred CCCHHHHHHHHHHhcC-------CCHHHHHHH-HHHHHHHcCCCccccccc-----CCCChhHHHHHHHHHHHhCCCcEE
Q 000224 650 ELTVREHLEMFAVLKG-------VKEELLESV-VAEMVDEVGLADKVNIVV-----RALSGGMKRKLSLGIALIGDSKVV 716 (1833)
Q Consensus 650 ~lTv~e~l~~~~~~~~-------~~~~~~~~~-v~~~l~~~~L~~~~~~~~-----~~LSgGqkqrl~lA~al~~~p~vl 716 (1833)
.+||+|++.|.++++. .++++.+++ ++++++.+||.+.+|+++ +.|||||||||+||+||+.+|+|+
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 9999999999877652 334443333 467899999998777654 679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCH-HHHHhhcCEEEEeeCCEEEeecCHHHHHhhh-CCcEEEEE
Q 000224 717 ILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSM-DEAEELGDRIAIMANGSLKCCGSSLFLKHQY-GVGYTLTL 792 (1833)
Q Consensus 717 iLDEPtsgLD~~~r~~l~~~l~~~~--~g~tiil~tH~~-~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~~-g~gy~l~~ 792 (1833)
+|||||+|||+.++..+.+.|+++. .|+|||+++|+. +++..++|||++|++|+++..|++.+++.-+ ..||. +
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~--~ 309 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFK--C 309 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCC--C
Confidence 9999999999999999999999985 389999999996 7899999999999999999999998887654 23442 1
Q ss_pred EecCCChhhHHHHHHHhC-CCceEEeeeCcEEEEEecCCCcchHHHHHHHHHHhhhhccccccccccccccCCCeeEEEe
Q 000224 793 VKSAPDASAAADIVYRHI-PSALCVSEVGTEITFKLPLASSSSFESMFREIESCIRKSVSKVEADATEDTDYLGIESFGI 871 (1833)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 871 (1833)
+......+++..-. |...... .+.+. ..|. ....+.+.+++-+...+ .....+...++.
T Consensus 310 ----p~~~n~aDfl~~~~~~~~~~~~-~~~e~--~~~~-~~~~~~~~~~~s~~~~~-----~~~~~~~~~~~~------- 369 (1394)
T TIGR00956 310 ----PDRQTTADFLTSLTSPAERQIK-PGYEK--KVPR-TPQEFETYWRNSPEYAQ-----LMKEIDEYLDRC------- 369 (1394)
T ss_pred ----CCCCChHHHHHhccChhhhhcc-ccccc--cCCC-CHHHHHHHHHcCHHHHH-----HHHHHHHHhhhc-------
Confidence 11111222222211 1000000 00000 0111 11112211111000000 000000000000
Q ss_pred cCCChHHHHHHHhcCCCcchhhhhhccccccccccccccCCCCccccccccccCCcccccceeeeeecchhhhhhHHhhh
Q 000224 872 SVTTLEEVFLRVAGCNLDESECISQRNNLVTLDYVSAESDDQAPKRISNCKLFGNYKWVFGFIVTVVQRACTLIVAAVLG 951 (1833)
Q Consensus 872 s~~tlE~vfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 951 (1833)
....-.+.+... . ...+. + . .
T Consensus 370 ~~~~~~~~~~~~--------------~-----------~~~~~-~-~--~------------------------------ 390 (1394)
T TIGR00956 370 SESDTKEAYRES--------------H-----------VAKQS-K-R--T------------------------------ 390 (1394)
T ss_pred cchhhHHHHHHH--------------H-----------Hhhhc-c-c--c------------------------------
Confidence 000000000000 0 00000 0 0 0
Q ss_pred hhhhhcccccccccccchhHHHHHHHHHHHHHhHhccchhHHHHHHHHHHHHH-HHHHHHHhccCCCCCCccccccccCC
Q 000224 952 FLNFLIKKCCTCCIISRSMFWQHCKALFIKRAVSARRDRKTIVFQLLIPAIFL-LVGLLFLKLKPHPDMLSVTFTTSNFN 1030 (1833)
Q Consensus 952 ~~~~~~~~~~~~~~~~~~~~~~q~~al~~Kr~~~~~R~~~~~~~~l~lP~~~~-~~~l~~~~~~~~~~~~~~~l~~~~~~ 1030 (1833)
.........+++|++.++++.+...+||+..+...++..+++. ++|.++...... +
T Consensus 391 ----------~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~--~----------- 447 (1394)
T TIGR00956 391 ----------RPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKN--T----------- 447 (1394)
T ss_pred ----------cCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCC--c-----------
Confidence 0000122458999999999999999999999988777665432 334433221000 0
Q ss_pred CccCCCCCCCCcccccCchhhhhhhhhhcCCcccccccCCCCCCChHHHHHHHHHhcCCCCcchhhchhHHHHHhhhhcc
Q 000224 1031 PLLSGGGGGGPIPFDLSWPIANEVSKYIQGGWIQRFKQSSYRFPNAEKALADAVDAAGPTLGPVLLSMSEYLMSSFNESY 1110 (1833)
Q Consensus 1031 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 1110 (1833)
. .+
T Consensus 448 ---------------------~--------------------------~~------------------------------ 450 (1394)
T TIGR00956 448 ---------------------S--------------------------DF------------------------------ 450 (1394)
T ss_pred ---------------------h--------------------------hH------------------------------
Confidence 0 00
Q ss_pred cceecEEEeeccCCCCceeEEEEeCCCCCChHHHHHHHHHHHHHHHhcCCCcceEEEEeecCCCchhhhhhhcchhhhHH
Q 000224 1111 QSRYGAIVMDDQNDDGSLGFTVLHNSSCQHAGPTFINVMNTAILRLATGNRNMTIRTRNHPLPTTQSQQLQRHDLDAFSV 1190 (1833)
Q Consensus 1111 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~hs~p~~ln~~~nailr~~~~~~~~~I~~~~~Plp~~~~~~~~~~~~~~~~~ 1190 (1833)
.....
T Consensus 451 ---------------------------------------------------------------------------~~r~g 455 (1394)
T TIGR00956 451 ---------------------------------------------------------------------------YSRGG 455 (1394)
T ss_pred ---------------------------------------------------------------------------HHHHH
Confidence 00000
Q ss_pred HHHHHHH-HHHHhhHhHHHHHHHHHHhHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcccccccCc
Q 000224 1191 SIIISIA-FSFIPASFAVAIVKEREVKAKQQQLISGV-SVLSYWTSTYIWDFISFLFPSSCAII-LFYIFGLDQFVGRGC 1267 (1833)
Q Consensus 1191 ~~~i~~~-~s~i~a~f~~~~V~ER~~k~k~lq~vsGv-~~~~YW~s~~l~D~i~~li~~~~~ii-i~~~f~~~~~~~~~~ 1267 (1833)
++++++. .++....-+.....||..-.|| .-+|. ++.+|.++..+.|+...++.+++..+ +++..++.. +.+.
T Consensus 456 ~lf~~~~~~~~~~~~~i~~~~~eR~i~~re--~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~--~~~~ 531 (1394)
T TIGR00956 456 ALFFAILFNAFSSLLEIASMYEARPIVEKH--RKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRR--TAGR 531 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcceeee--ccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcc--cHHH
Confidence 0011111 1111111112223455444333 33454 78999999999999876655544443 333433321 2233
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccCchhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcccc
Q 000224 1268 LLPTVLIFLGYGLAIASSTYCLTFFFSDHTMAQNVVLLV----HFFTGLILMVISFIMGLLEATRSANSLLKNFFRLSPG 1343 (1833)
Q Consensus 1268 ~~~~~ll~llyG~a~i~~~Yl~Sf~f~~~~~a~~~~~~i----~~~~g~~~~i~~~il~~~~~~~~~~~~l~~~f~l~P~ 1343 (1833)
++..++++++..+++..+..+++.++.+...|.....++ .++.|+ +-........++|+..+.|.
T Consensus 532 Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf-----------~i~~~~mp~~~~W~~yisp~ 600 (1394)
T TIGR00956 532 FFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGF-----------AIPRPSMLGWSKWIYYVNPL 600 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHccc-----------ccChhhccHHHHHHHHcCHH
Confidence 444555555566666667777777777766554332221 111221 11122233344555555553
Q ss_pred hhhhhHHHHHHHhhhc--cc-----------------CC----------CCC--------CccccccchhhHHHHHHHHH
Q 000224 1344 FCFADGLASLALLRQG--MK-----------------DK----------TSD--------GVFDWNVTSASICYLGCESI 1386 (1833)
Q Consensus 1344 ~~l~~gl~~l~~~~~~--~~-----------------~~----------~~~--------~~~~~~~~g~~i~~l~~~~i 1386 (1833)
.--..++......... +. .+ ... -.+.++..+.++.++++-.+
T Consensus 601 ~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v 680 (1394)
T TIGR00956 601 AYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTV 680 (1394)
T ss_pred HHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHH
Confidence 2222222211110000 00 00 000 01122233444555555555
Q ss_pred HHHHHHH-HHHhccCcchhhhhHhhhhccccccccCCCCCCCcccccCCCCCCc---CC-CCCChhhHHHHhhcccCCCC
Q 000224 1387 CYFLLTL-GLELLPSHKWTLMTIKEWWKGTRHRLCNTPSSYLEPLLQSSSESDT---LD-LNEDIDVQVERNRVLSGSVD 1461 (1833)
Q Consensus 1387 ~~~lL~l-~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~ed~dV~~E~~rv~~~~~~ 1461 (1833)
+|.++.+ .+++....... .....+-++..... .......+....+..+... .+ ..|..++. +..+... ..+
T Consensus 681 ~f~~~~~l~l~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~ 756 (1394)
T TIGR00956 681 FFFFVYILLTEFNKGAKQK-GEILVFRRGSLKRA-KKAGETSASNKNDIEAGEVLGSTDLTDESDDVN-DEKDMEK-ESG 756 (1394)
T ss_pred HHHHHHHHHHHhccccCCC-CceEeeccccccch-hhcccccccccccccccccCCCCcccccccccc-ccccccc-cCC
Confidence 5544433 34432110000 00000000000000 0000000000000000000 00 00000100 0000000 012
Q ss_pred cceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC---CCceEEEEcCeeCCCCh
Q 000224 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY---PTDGTAFIFGKDIRSDP 1538 (1833)
Q Consensus 1462 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~---p~~G~i~i~G~~i~~~~ 1538 (1833)
..+++++||++.|+.++ +++.+|+|||+++++||++||+||||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 757 ~~~l~~~nl~~~~~~~~--~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-- 832 (1394)
T TIGR00956 757 EDIFHWRNLTYEVKIKK--EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-- 832 (1394)
T ss_pred CceEEEEeeEEEecCCC--CCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh--
Confidence 34689999999996321 34679999999999999999999999999999999999997 789999999998842
Q ss_pred HHhccceEEEecCCCCCCCCCHHHHHHHHHHHcC---CChhhHHHHHHHHHHHcCCccccCCCCC----CCChhHHHHHH
Q 000224 1539 KAARRLIGYCPQFDALLEYLTVQEHLELYARIKG---VAEYRMDDVVMEKLVEFDLLKHAKKPSF----TLSGGNKRKLS 1611 (1833)
Q Consensus 1539 ~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g---~~~~~~~~~~~~~l~~~~L~~~~~~~~~----~LSgG~kqrl~ 1611 (1833)
..|+.+|||||++.+++.+||+|||.+.+.++. .++++..++++++++.++|.+.+|+.++ .|||||||||+
T Consensus 833 -~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~ 911 (1394)
T TIGR00956 833 -SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLT 911 (1394)
T ss_pred -hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHH
Confidence 467889999999988899999999999887652 3444556778999999999988898887 79999999999
Q ss_pred HHHHHhcCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHH-HHHHcCEEEEEECC-EEEEecChh
Q 000224 1612 VAIAMIGDPP-IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNE-AQALCTRIGIMVGG-QLRCIGSPQ 1688 (1833)
Q Consensus 1612 lA~al~~~p~-vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e-~~~l~drv~im~~G-~i~~~g~~~ 1688 (1833)
||+||+.+|+ ||+|||||+|||+.++..+++.|+++++ +| +|||+|||+++. +.+.|||+++|++| ++++.|++.
T Consensus 912 Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~-~g-~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~ 989 (1394)
T TIGR00956 912 IGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HG-QAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLG 989 (1394)
T ss_pred HHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cC-CEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcc
Confidence 9999999997 9999999999999999999999999964 44 589999999986 45789999999997 999999873
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-76 Score=765.88 Aligned_cols=229 Identities=25% Similarity=0.351 Sum_probs=199.2
Q ss_pred ceEEEEeEEEEcCCCcc-----ccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC
Q 000224 1463 AIIYLRNLRKVYPGGKR-----SDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD 1537 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~-----~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~ 1537 (1833)
++|+++||+|.|+.... .+.+.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++...
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~ 391 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL 391 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC
Confidence 47999999999963100 0124699999999999999999999999999999999999999999999999988642
Q ss_pred -h---HHhccceEEEecCC--CCCCCCCHHHHHHHHHHHcCC-ChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHH
Q 000224 1538 -P---KAARRLIGYCPQFD--ALLEYLTVQEHLELYARIKGV-AEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRK 1609 (1833)
Q Consensus 1538 -~---~~~~~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~~g~-~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~kqr 1609 (1833)
. ...+++|||+||++ .+++.+||.||+.+....++. ...+.++++.++++.+||. +..++++++||||||||
T Consensus 392 ~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQR 471 (623)
T PRK10261 392 SPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQR 471 (623)
T ss_pred CHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHH
Confidence 1 23467899999996 588899999999876555554 2334556788999999996 57899999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhH
Q 000224 1610 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1689 (1833)
Q Consensus 1610 l~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~ 1689 (1833)
|+|||||+.+|++|||||||+|||+.+++.++++|++++++.| .|||++|||++++..+||||++|.+|++++.|++++
T Consensus 472 v~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g-~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~ 550 (623)
T PRK10261 472 ICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFG-IAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRA 550 (623)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999999999999965444 689999999999999999999999999999999999
Q ss_pred HHh
Q 000224 1690 LKT 1692 (1833)
Q Consensus 1690 l~~ 1692 (1833)
+.+
T Consensus 551 i~~ 553 (623)
T PRK10261 551 VFE 553 (623)
T ss_pred Hhc
Confidence 864
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-74 Score=744.03 Aligned_cols=227 Identities=30% Similarity=0.414 Sum_probs=193.1
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEc-Cee---CCCC--
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIF-GKD---IRSD-- 1537 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~-G~~---i~~~-- 1537 (1833)
+|+++|++++|++.. .+.+.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++ |.+ +...
T Consensus 279 ~l~~~~l~~~~~~~~-~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~ 357 (520)
T TIGR03269 279 IIKVRNVSKRYISVD-RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP 357 (520)
T ss_pred eEEEeccEEEeccCC-CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccch
Confidence 688999999995310 023469999999999999999999999999999999999999999999996 643 2211
Q ss_pred --hHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCcc-----ccCCCCCCCChhHHHHH
Q 000224 1538 --PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK-----HAKKPSFTLSGGNKRKL 1610 (1833)
Q Consensus 1538 --~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~-----~~~~~~~~LSgG~kqrl 1610 (1833)
....+++|||+||++.+++.+||+||+.+.... +.+....++++.++++.++|.+ ..++++.+|||||||||
T Consensus 358 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv 436 (520)
T TIGR03269 358 DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRV 436 (520)
T ss_pred hhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHH
Confidence 123456799999998899999999999875433 3333334456788999999964 57899999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000224 1611 SVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690 (1833)
Q Consensus 1611 ~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l 1690 (1833)
+|||||+.+|++|||||||+|||+.+++.+++.|++++++.| .|||++|||++++..+|||+++|++|++++.|+++++
T Consensus 437 ~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g-~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 515 (520)
T TIGR03269 437 ALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEME-QTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEI 515 (520)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcC-cEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999865444 6899999999999999999999999999999999887
Q ss_pred Hhh
Q 000224 1691 KTR 1693 (1833)
Q Consensus 1691 ~~~ 1693 (1833)
.++
T Consensus 516 ~~~ 518 (520)
T TIGR03269 516 VEE 518 (520)
T ss_pred Hhh
Confidence 654
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-74 Score=742.28 Aligned_cols=214 Identities=23% Similarity=0.407 Sum_probs=191.3
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCC--CcceEEEcCccCCcc-H-HH
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP--TTGDALVFGKNITAD-M-DE 633 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p--~~G~i~i~g~~i~~~-~-~~ 633 (1833)
..|+++||+|+|+ ++.+++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... . ..
T Consensus 4 ~~l~~~nl~~~~~----~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~ 79 (506)
T PRK13549 4 YLLEMKNITKTFG----GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDT 79 (506)
T ss_pred ceEEEeeeEEEeC----CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHH
Confidence 3699999999995 34699999999999999999999999999999999999996 899999999988532 2 23
Q ss_pred hhcceEEEccCCCCCCCCCHHHHHHHHHHhc--C-CCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHh
Q 000224 634 IRKGLGVCPQYDILFPELTVREHLEMFAVLK--G-VKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALI 710 (1833)
Q Consensus 634 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~--~-~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~ 710 (1833)
.|+.+|||||++.+++.+||+||+.+..... + .+.++.+++++++++.+|+.+..++++++||||||||++|||||+
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~ 159 (506)
T PRK13549 80 ERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALN 159 (506)
T ss_pred HHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHh
Confidence 4678999999999999999999998865432 2 244456678999999999998889999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeec
Q 000224 711 GDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 775 (1833)
Q Consensus 711 ~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G 775 (1833)
.+|++|||||||+|||+.++++++++|++++ +|+|||++||+++++..+||||++|++|+++..|
T Consensus 160 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 225 (506)
T PRK13549 160 KQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTR 225 (506)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeec
Confidence 9999999999999999999999999999985 5899999999999999999999999999987544
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-74 Score=741.66 Aligned_cols=227 Identities=22% Similarity=0.393 Sum_probs=193.7
Q ss_pred eEEEEeEEEEcCCCcc-----ccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-
Q 000224 1464 IIYLRNLRKVYPGGKR-----SDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD- 1537 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~-----~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~- 1537 (1833)
+|+++|+++.|+.+.. .+++.+++|+||+|++||++||+||||||||||+|+|+|++ |++|+|+++|+++...
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccc
Confidence 5788899999952100 01356999999999999999999999999999999999998 4999999999988542
Q ss_pred hH---HhccceEEEecCC--CCCCCCCHHHHHHHHHHHcC--CChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHH
Q 000224 1538 PK---AARRLIGYCPQFD--ALLEYLTVQEHLELYARIKG--VAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRK 1609 (1833)
Q Consensus 1538 ~~---~~~~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~~g--~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~kqr 1609 (1833)
.. ..++++||+||++ .+++.+||+||+.+....++ .+..+.++++.++++.++|. +..++++.+||||||||
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qr 433 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQR 433 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHH
Confidence 21 2356799999996 47888999999987654332 34444456788899999997 56899999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhH
Q 000224 1610 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1689 (1833)
Q Consensus 1610 l~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~ 1689 (1833)
|+||+||+.+|++|||||||+|||+.+++.++++|++++++.| +|||++|||++++..+|||+++|++|++++.|++++
T Consensus 434 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 512 (529)
T PRK15134 434 IAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQ-LAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCER 512 (529)
T ss_pred HHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhC-CEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999999999999965434 589999999999999999999999999999999988
Q ss_pred HHh
Q 000224 1690 LKT 1692 (1833)
Q Consensus 1690 l~~ 1692 (1833)
+.+
T Consensus 513 ~~~ 515 (529)
T PRK15134 513 VFA 515 (529)
T ss_pred Hhc
Confidence 754
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-72 Score=773.01 Aligned_cols=822 Identities=20% Similarity=0.251 Sum_probs=496.6
Q ss_pred cccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCC---cceEEEcCccCCccHHHhhcceEEEccCCCCCCCC
Q 000224 575 NCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPT---TGDALVFGKNITADMDEIRKGLGVCPQYDILFPEL 651 (1833)
Q Consensus 575 ~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~---~G~i~i~g~~i~~~~~~~r~~ig~~~Q~~~l~~~l 651 (1833)
++.+|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..|+.+|||+|++.+++.+
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~--~~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEF--VPRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhh--cccceeEEecccccCCCcC
Confidence 356999999999999999999999999999999999999998 99999999987432 1267899999999999999
Q ss_pred CHHHHHHHHHHhcCCC----------HHHH------------------------HHHHHHHHHHcCCCccc-----cccc
Q 000224 652 TVREHLEMFAVLKGVK----------EELL------------------------ESVVAEMVDEVGLADKV-----NIVV 692 (1833)
Q Consensus 652 Tv~e~l~~~~~~~~~~----------~~~~------------------------~~~v~~~l~~~~L~~~~-----~~~~ 692 (1833)
||+|+|.|.+++++.. +++. +..++++++.+||++.. |+.+
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 9999999988766421 1110 12357799999998765 4566
Q ss_pred CCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCH-HHHHhhcCEEEEeeCC
Q 000224 693 RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSM-DEAEELGDRIAIMANG 769 (1833)
Q Consensus 693 ~~LSgGqkqrl~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~--~g~tiil~tH~~-~e~~~l~Dri~im~~G 769 (1833)
+.|||||||||+||+||+++|++++|||||+|||+.++.++.+.|+++. .|+|+|+++|+. +++..++|+|++|++|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 8999999999999999999999999999999999999999999999984 489999999996 6899999999999999
Q ss_pred EEEeecCHHHHHhhh-CCcEEEEEEecCCChhhHHHHHHHhCCCceEEeeeCcEE-EEEecCC--CcchHHHHHHHHHHh
Q 000224 770 SLKCCGSSLFLKHQY-GVGYTLTLVKSAPDASAAADIVYRHIPSALCVSEVGTEI-TFKLPLA--SSSSFESMFREIESC 845 (1833)
Q Consensus 770 ~l~~~G~~~~Lk~~~-g~gy~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~p~~--~~~~~~~~~~~le~~ 845 (1833)
+++..|+..+++..+ ..||. +. ......+++..-.... +..... .-..|.. ....+.+.++.-+..
T Consensus 415 ~ivy~G~~~~~~~yF~~lGf~--cP----~~~n~ADFl~~v~s~~----~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~ 484 (1470)
T PLN03140 415 QIVYQGPRDHILEFFESCGFK--CP----ERKGTADFLQEVTSKK----DQEQYWADRNKPYRYISVSEFAERFKSFHVG 484 (1470)
T ss_pred eEEEeCCHHHHHHHHHHcCCC--CC----CCCChHHHHHHhcCch----hhhhhhhccCCccccCCHHHHHHHHHhcHHH
Confidence 999999998887654 23552 11 1112223332211100 000000 0001110 011122211111000
Q ss_pred hhhccccccccccccccCCCeeEEEecCCChHHHHHHHhcCCCcchhhhhhccccccccccccccCCCCccccccccccC
Q 000224 846 IRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFLRVAGCNLDESECISQRNNLVTLDYVSAESDDQAPKRISNCKLFG 925 (1833)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~tlE~vfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 925 (1833)
.+ + ...+++.+ ++. . .+... ...
T Consensus 485 ~~----------------~--------~~~~~~~~--------~~~-----~--------------~~~~~-----~~~- 507 (1470)
T PLN03140 485 MQ----------------L--------ENELSVPF--------DKS-----Q--------------SHKAA-----LVF- 507 (1470)
T ss_pred HH----------------H--------HHHHhhhh--------hhh-----h--------------ccccc-----ccC-
Confidence 00 0 00000000 000 0 00000 000
Q ss_pred CcccccceeeeeecchhhhhhHHhhhhhhhhcccccccccccchhHHHHHHHHHHHHHhHhccchhHHHHHHHHHHHHH-
Q 000224 926 NYKWVFGFIVTVVQRACTLIVAAVLGFLNFLIKKCCTCCIISRSMFWQHCKALFIKRAVSARRDRKTIVFQLLIPAIFL- 1004 (1833)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~al~~Kr~~~~~R~~~~~~~~l~lP~~~~- 1004 (1833)
..-...++.|+++++++.+...+||+..+.+.++.-+++.
T Consensus 508 ---------------------------------------~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~al 548 (1470)
T PLN03140 508 ---------------------------------------SKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAA 548 (1470)
T ss_pred ---------------------------------------CCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 0011346889999999999999999998888776665543
Q ss_pred HHHHHHHhccCCCCCCccccccccCCCccCCCCCCCCcccccCchhhhhhhhhhcCCcccccccCCCCCCChHHHHHHHH
Q 000224 1005 LVGLLFLKLKPHPDMLSVTFTTSNFNPLLSGGGGGGPIPFDLSWPIANEVSKYIQGGWIQRFKQSSYRFPNAEKALADAV 1084 (1833)
Q Consensus 1005 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 1084 (1833)
++|.++.....+.. +..
T Consensus 549 i~GsvF~~~~~~~~--------------------------------------------------------~~~------- 565 (1470)
T PLN03140 549 IASTVFLRTEMHTR--------------------------------------------------------NEE------- 565 (1470)
T ss_pred HHHHHHhcCCCCCC--------------------------------------------------------cch-------
Confidence 33444433210000 000
Q ss_pred HhcCCCCcchhhchhHHHHHhhhhcccceecEEEeeccCCCCceeEEEEeCCCCCChHHHHHHHHHHHHHHHhcCCCcce
Q 000224 1085 DAAGPTLGPVLLSMSEYLMSSFNESYQSRYGAIVMDDQNDDGSLGFTVLHNSSCQHAGPTFINVMNTAILRLATGNRNMT 1164 (1833)
Q Consensus 1085 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~hs~p~~ln~~~nailr~~~~~~~~~ 1164 (1833)
++ +
T Consensus 566 ----------------------------------------~~--------------------~----------------- 568 (1470)
T PLN03140 566 ----------------------------------------DG--------------------A----------------- 568 (1470)
T ss_pred ----------------------------------------hH--------------------H-----------------
Confidence 00 0
Q ss_pred EEEEeecCCCchhhhhhhcchhhhHHHHHHH--HHHHHHhhHhHHHHHHHHHHhHHHHHHHhC-CChHHHHHHHHHHHHH
Q 000224 1165 IRTRNHPLPTTQSQQLQRHDLDAFSVSIIIS--IAFSFIPASFAVAIVKEREVKAKQQQLISG-VSVLSYWTSTYIWDFI 1241 (1833)
Q Consensus 1165 I~~~~~Plp~~~~~~~~~~~~~~~~~~~~i~--~~~s~i~a~f~~~~V~ER~~k~k~lq~vsG-v~~~~YW~s~~l~D~i 1241 (1833)
.....+..++.+. .+++-++..+ .||..=.||-.. + .++++|.++..+.|+.
T Consensus 569 ------------------~~~g~lff~~l~~~~~~~~~l~~~~-----~~r~vf~ker~~--~~Y~~~ay~la~~l~~iP 623 (1470)
T PLN03140 569 ------------------LYIGALLFSMIINMFNGFAELALMI-----QRLPVFYKQRDL--LFHPPWTFTLPTFLLGIP 623 (1470)
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHHH-----hccchhHHhhhc--cCcCHHHHHHHHHHHHHH
Confidence 0000000000000 0111122222 333332222221 3 4789999999999998
Q ss_pred HHHHHHHHH-HHHHHHHhcccccccCchHHHHHHHHHHHHHHHHHHHhhhhhccCchhhhHHHHHHHHHHHHHHHHHHHH
Q 000224 1242 SFLFPSSCA-IILFYIFGLDQFVGRGCLLPTVLIFLGYGLAIASSTYCLTFFFSDHTMAQNVVLLVHFFTGLILMVISFI 1320 (1833)
Q Consensus 1242 ~~li~~~~~-iii~~~f~~~~~~~~~~~~~~~ll~llyG~a~i~~~Yl~Sf~f~~~~~a~~~~~~i~~~~g~~~~i~~~i 1320 (1833)
..++.+++. +++++..++.. ..+.++..++++++..++...+..+++..+.+...|.....++.. +....
T Consensus 624 ~~~i~~~if~~I~Y~m~Gl~~--~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l-------~~~lf 694 (1470)
T PLN03140 624 ISIIESVVWVVITYYSIGFAP--EASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLL-------LVFLL 694 (1470)
T ss_pred HHHHHHHHHHhHHhhhcCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH-------HHHHH
Confidence 877666554 44444544432 223455555555555666666666777666665554433221110 00001
Q ss_pred HHHHHHhHHHHHHHHHhhhcccchhhhhHHHHHHHhhhcccCC------CCC--------Cccc-cccchhhHHHHHHHH
Q 000224 1321 MGLLEATRSANSLLKNFFRLSPGFCFADGLASLALLRQGMKDK------TSD--------GVFD-WNVTSASICYLGCES 1385 (1833)
Q Consensus 1321 l~~~~~~~~~~~~l~~~f~l~P~~~l~~gl~~l~~~~~~~~~~------~~~--------~~~~-~~~~g~~i~~l~~~~ 1385 (1833)
-+.+-........++|+..+.|..--..++..-.......... ... +... ....+.++..|++-.
T Consensus 695 ~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~ 774 (1470)
T PLN03140 695 GGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFT 774 (1470)
T ss_pred ccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHH
Confidence 1111112233445566666666322112222211100000000 000 0000 011123333444434
Q ss_pred HHHHHH-HHHHHhccCcchhhhhHhhhhccccccccCCCCCCCccc-ccCCC-CC---Cc------CCC---CCChhhHH
Q 000224 1386 ICYFLL-TLGLELLPSHKWTLMTIKEWWKGTRHRLCNTPSSYLEPL-LQSSS-ES---DT------LDL---NEDIDVQV 1450 (1833)
Q Consensus 1386 i~~~lL-~l~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~---~~------~~~---~ed~dV~~ 1450 (1833)
++|.++ .+.+++....... .....+...... .......+. .+... .. .. ... ..+....
T Consensus 775 v~f~~l~~l~L~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 848 (1470)
T PLN03140 775 ILFNVLFTLALTYLNPLGKK----QAIISEETAEEM-EGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRDSSLE- 848 (1470)
T ss_pred HHHHHHHHHHHHhcCccCCC----Cccccccchhhh-hccccccccccccccccccccccccccccccccccccccccc-
Confidence 444333 3333432110000 000000000000 000000000 00000 00 00 000 0000000
Q ss_pred HHhhccc--C---CCCcceEEEEeEEEEcCCCcc-------ccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhC
Q 000224 1451 ERNRVLS--G---SVDNAIIYLRNLRKVYPGGKR-------SDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG 1518 (1833)
Q Consensus 1451 E~~rv~~--~---~~~~~~l~v~~l~k~y~~~~~-------~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~G 1518 (1833)
+...+.. + ......+..+||++..+.... .+++.+|+|+|+++++||+++|+||||||||||+++|+|
T Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG 928 (1470)
T PLN03140 849 AANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAG 928 (1470)
T ss_pred cccccccccccccCCCcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcC
Confidence 0000000 0 011225899999988753210 134579999999999999999999999999999999999
Q ss_pred CCCC--CceEEEEcCeeCCCChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHc---CCChhhHHHHHHHHHHHcCCcc
Q 000224 1519 EEYP--TDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIK---GVAEYRMDDVVMEKLVEFDLLK 1593 (1833)
Q Consensus 1519 l~~p--~~G~i~i~G~~i~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~---g~~~~~~~~~~~~~l~~~~L~~ 1593 (1833)
..++ .+|+|.++|.+... ...++.+|||+|++.+++.+||+|+|.+.+.++ ..+.++..+.++++++.++|.+
T Consensus 929 ~~~~g~~~G~I~inG~~~~~--~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~ 1006 (1470)
T PLN03140 929 RKTGGYIEGDIRISGFPKKQ--ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDN 1006 (1470)
T ss_pred CCCCCcccceEEECCccCCh--HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChh
Confidence 9763 78999999987642 345677999999999999999999999887654 2333445567889999999998
Q ss_pred ccCCCC-----CCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHH-HHH
Q 000224 1594 HAKKPS-----FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMN-EAQ 1667 (1833)
Q Consensus 1594 ~~~~~~-----~~LSgG~kqrl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~-e~~ 1667 (1833)
.+++++ +.|||||||||+||++|+.+|+||+|||||+|||+.++..+++.|+++++ +| +|||+|||+++ ++.
T Consensus 1007 ~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~-~g-~tVI~t~Hq~~~~i~ 1084 (1470)
T PLN03140 1007 LKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TG-RTVVCTIHQPSIDIF 1084 (1470)
T ss_pred HhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCCCHHHH
Confidence 888886 58999999999999999999999999999999999999999999999964 45 58999999998 578
Q ss_pred HHcCEEEEEEC-CEEEEecChh
Q 000224 1668 ALCTRIGIMVG-GQLRCIGSPQ 1688 (1833)
Q Consensus 1668 ~l~drv~im~~-G~i~~~g~~~ 1688 (1833)
.+|||+++|++ |++++.|++.
T Consensus 1085 ~~~D~vllL~~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1085 EAFDELLLMKRGGQVIYSGPLG 1106 (1470)
T ss_pred HhCCEEEEEcCCCEEEEECCcc
Confidence 89999999996 8999999863
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-74 Score=738.38 Aligned_cols=215 Identities=32% Similarity=0.462 Sum_probs=190.9
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHH-Hhh
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMD-EIR 635 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~-~~r 635 (1833)
..++++||+|.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ... ..+
T Consensus 4 ~~l~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 79 (510)
T PRK09700 4 PYISMAGIGKSFGP----VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQ 79 (510)
T ss_pred ceEEEeeeEEEcCC----eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHH
Confidence 36999999999953 469999999999999999999999999999999999999999999999998853 222 235
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHH----hcCC---CHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHH
Q 000224 636 KGLGVCPQYDILFPELTVREHLEMFAV----LKGV---KEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIA 708 (1833)
Q Consensus 636 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~----~~~~---~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~a 708 (1833)
+++||+||++.+++.+||+||+.+... ..+. +.++.++++.++++.+||.+..++++++|||||||||+||||
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~a 159 (510)
T PRK09700 80 LGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKT 159 (510)
T ss_pred CCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHH
Confidence 679999999999999999999986432 1222 234556788999999999988999999999999999999999
Q ss_pred HhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecC
Q 000224 709 LIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776 (1833)
Q Consensus 709 l~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~ 776 (1833)
|+.+|++|||||||+|||+.++++++++|++++ +|+|||++||+++++..+||||++|++|++++.|+
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~ 228 (510)
T PRK09700 160 LMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGM 228 (510)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecc
Confidence 999999999999999999999999999999985 58999999999999999999999999999876554
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-73 Score=731.16 Aligned_cols=213 Identities=25% Similarity=0.433 Sum_probs=190.4
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCcc--HHHhhc
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD--MDEIRK 636 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~--~~~~r~ 636 (1833)
.|+++||+|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....++
T Consensus 4 ~i~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 79 (501)
T PRK10762 4 LLQLKGIDKAFPG----VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEA 79 (501)
T ss_pred eEEEeeeEEEeCC----eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhC
Confidence 5899999999953 4699999999999999999999999999999999999999999999999987532 223457
Q ss_pred ceEEEccCCCCCCCCCHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCC
Q 000224 637 GLGVCPQYDILFPELTVREHLEMFAVLK----GVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGD 712 (1833)
Q Consensus 637 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~----~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~ 712 (1833)
.+||+||++.+++.+||+||+.++.... ..+.++.++++.++++.+||.+..++++++||||||||++|||||+.+
T Consensus 80 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 159 (501)
T PRK10762 80 GIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFE 159 (501)
T ss_pred CEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcC
Confidence 8999999999999999999998864332 123445567889999999999888999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeec
Q 000224 713 SKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 775 (1833)
Q Consensus 713 p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G 775 (1833)
|++|||||||+|||+.++++++++|++++ +|+|||++|||++++..+||||++|++|+++..|
T Consensus 160 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~ 223 (501)
T PRK10762 160 SKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAER 223 (501)
T ss_pred CCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEec
Confidence 99999999999999999999999999985 5899999999999999999999999999987544
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-73 Score=727.51 Aligned_cols=211 Identities=24% Similarity=0.420 Sum_probs=186.7
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCC--CcceEEEcCccCCc-cH-HHhh
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP--TTGDALVFGKNITA-DM-DEIR 635 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p--~~G~i~i~g~~i~~-~~-~~~r 635 (1833)
|+++||+|.|+ ++.+++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. +. ...+
T Consensus 2 l~i~~l~~~~~----~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (500)
T TIGR02633 2 LEMKGIVKTFG----GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTER 77 (500)
T ss_pred EEEEeEEEEeC----CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHh
Confidence 78999999995 24699999999999999999999999999999999999997 79999999998853 22 2345
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhc--C--CCHHHHHHHHHHHHHHcCCCccc-ccccCCCChhHHHHHHHHHHHh
Q 000224 636 KGLGVCPQYDILFPELTVREHLEMFAVLK--G--VKEELLESVVAEMVDEVGLADKV-NIVVRALSGGMKRKLSLGIALI 710 (1833)
Q Consensus 636 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~--~--~~~~~~~~~v~~~l~~~~L~~~~-~~~~~~LSgGqkqrl~lA~al~ 710 (1833)
+.+||+||++.+++.+||+||+.+..... + .+.++.+++++++++.+||.+.. ++++++|||||||||+|||||+
T Consensus 78 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~ 157 (500)
T TIGR02633 78 AGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALN 157 (500)
T ss_pred CCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHh
Confidence 78999999999999999999998764432 1 33445667889999999998764 6789999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEee
Q 000224 711 GDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCC 774 (1833)
Q Consensus 711 ~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~ 774 (1833)
.+|++|||||||+|||+.++++++++|++++ +|+|||++||+++++..+||||++|++|+++..
T Consensus 158 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~ 222 (500)
T TIGR02633 158 KQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVAT 222 (500)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeee
Confidence 9999999999999999999999999999985 589999999999999999999999999998643
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-72 Score=723.75 Aligned_cols=212 Identities=26% Similarity=0.465 Sum_probs=190.8
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHH-hh
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDE-IR 635 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~-~r 635 (1833)
..|+++||+|+|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .... .+
T Consensus 10 ~~l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 85 (510)
T PRK15439 10 PLLCARSISKQYSG----VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQ 85 (510)
T ss_pred ceEEEEeEEEEeCC----ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 36999999999953 469999999999999999999999999999999999999999999999998753 2222 34
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcE
Q 000224 636 KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 715 (1833)
Q Consensus 636 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 715 (1833)
+.+||+||++.+++.+||+||+.+... ...+.++++.++++.+||.+..++++++|||||||||+|||||+.+|++
T Consensus 86 ~~i~~v~q~~~~~~~~tv~e~l~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~l 161 (510)
T PRK15439 86 LGIYLVPQEPLLFPNLSVKENILFGLP----KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRI 161 (510)
T ss_pred CCEEEEeccCccCCCCcHHHHhhcccc----cchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 579999999999999999999987532 1234567789999999999889999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCH
Q 000224 716 VILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSS 777 (1833)
Q Consensus 716 liLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~ 777 (1833)
|||||||+|||+.++++++++|++++ +|+|||++|||++++..+||||++|++|+++..|++
T Consensus 162 llLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~ 224 (510)
T PRK15439 162 LILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKT 224 (510)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCh
Confidence 99999999999999999999999985 589999999999999999999999999999877764
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-72 Score=723.34 Aligned_cols=212 Identities=27% Similarity=0.461 Sum_probs=190.4
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc--cHHHhh
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA--DMDEIR 635 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~--~~~~~r 635 (1833)
+.++++||+|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....|
T Consensus 3 ~~l~~~~l~~~~~~----~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 78 (501)
T PRK11288 3 PYLSFDGIGKTFPG----VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALA 78 (501)
T ss_pred ceEEEeeeEEEECC----EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHh
Confidence 36899999999953 469999999999999999999999999999999999999999999999998753 233457
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHH--hcC-CCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCC
Q 000224 636 KGLGVCPQYDILFPELTVREHLEMFAV--LKG-VKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGD 712 (1833)
Q Consensus 636 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~--~~~-~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~ 712 (1833)
+++||+||++.+++.+||.||+.+... ..+ .+..+.++++.++++.+||.+..++++++||||||||++|||||+.+
T Consensus 79 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~ 158 (501)
T PRK11288 79 AGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARN 158 (501)
T ss_pred CCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhC
Confidence 889999999999999999999987532 123 34455677899999999999888999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEe
Q 000224 713 SKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKC 773 (1833)
Q Consensus 713 p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~ 773 (1833)
|++|||||||+|||+.++++++++|++++ +|+|||++||+++++..+||||++|++|+++.
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~ 220 (501)
T PRK11288 159 ARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220 (501)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999985 58999999999999999999999999999864
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-72 Score=715.06 Aligned_cols=211 Identities=26% Similarity=0.401 Sum_probs=187.1
Q ss_pred EEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc--cHHHhhcceE
Q 000224 562 IRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA--DMDEIRKGLG 639 (1833)
Q Consensus 562 i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~--~~~~~r~~ig 639 (1833)
++||+|.|+ ++.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. .....++.+|
T Consensus 1 ~~nl~~~~~----~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 76 (491)
T PRK10982 1 MSNISKSFP----GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGIS 76 (491)
T ss_pred CCceEEEeC----CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEE
Confidence 368999995 3469999999999999999999999999999999999999999999999998753 2334567899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHH-hcC--CCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEE
Q 000224 640 VCPQYDILFPELTVREHLEMFAV-LKG--VKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVV 716 (1833)
Q Consensus 640 ~~~Q~~~l~~~lTv~e~l~~~~~-~~~--~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vl 716 (1833)
|+||++.+++.+||+||+.+... ..+ .+.++..++++++++.+|+.+..++++.+|||||||||+|||||+.+|++|
T Consensus 77 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~ll 156 (491)
T PRK10982 77 MVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIV 156 (491)
T ss_pred EEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 99999989999999999987532 223 234455678899999999998889999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecC
Q 000224 717 ILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776 (1833)
Q Consensus 717 iLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~ 776 (1833)
||||||+|||+.++++++++|++++ +|+|||++||+++++..+||||++|++|+++..|+
T Consensus 157 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~ 217 (491)
T PRK10982 157 IMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQP 217 (491)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999985 58999999999999999999999999999875443
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-68 Score=735.70 Aligned_cols=561 Identities=26% Similarity=0.424 Sum_probs=425.1
Q ss_pred eeeeccCCCcccchH---HHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHhHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 000224 263 IRMVPFPTREYTDDE---FQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLYMMGLKDGIFHLSWFITYAAQF 339 (1833)
Q Consensus 263 ~~~~~~p~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~v~~iv~EKe~~lke~m~~mGl~~~~~wlsw~i~~~~~~ 339 (1833)
+...|+|........ ........++++++++|.+..+.++.++|.||++|.|+++.++|++..+||+|.|++-++.+
T Consensus 1656 v~N~Plp~t~~~~~~~~~~~~~~~~~iai~ii~~~sfi~asfv~~~V~ER~skaK~lQ~vSGv~~~~YWls~fl~D~~~y 1735 (2272)
T TIGR01257 1656 VISQPLNLTKEQLSEITVLTTSVDAVVAICVIFAMSFVPASFVLYLIQERVNKAKHLQFISGVSPTTYWLTNFLWDIMNY 1735 (2272)
T ss_pred EEecCCCCchhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHheeeehHHhhhHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 345677765322111 11123345667777888888888999999999999999999999999999999999877777
Q ss_pred HHHHHHHHHHH----hcccccccChhhhHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH-HHH---hhhhc---
Q 000224 340 AVSSGIITACT----MDSLFKYSDKTVVFTYFFSFGLSAITLSFFISTFFARAKTAVAVGTLSFL-GAF---FPYYT--- 408 (1833)
Q Consensus 340 ~i~~~i~~~~~----~~~~f~~s~~~~~f~~~~l~~~s~i~~~f~iS~fF~~~~~a~~~~~l~~~-~~~---~~~~~--- 408 (1833)
+|.+++++++. ...+....++..+++++++||+|.|.|+|++|.+|+++.+|.++..++.+ ..+ +..++
T Consensus 1736 ~i~~~~~i~i~~~f~~~~~~~~~~l~~~~lll~lyG~a~ip~tYl~SflF~~~~~A~~~~~~in~~~G~~~~i~~~il~~ 1815 (2272)
T TIGR01257 1736 AVSAGLVVGIFIGFQKKAYTSPENLPALVALLMLYGWAVIPMMYPASFLFDVPSTAYVALSCANLFIGINSSAITFVLEL 1815 (2272)
T ss_pred HHHHHHHHHHHHHhChhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76655443221 12223335677889999999999999999999999999998654332221 111 11111
Q ss_pred ccC----CCchhHHhHHHhhhchhHHHHHHHHHHHHhh-------ccC-----CccccccccCCCCchHHHHHHHHHHHH
Q 000224 409 VND----EAVPMVLKVIASLLSPTAFALGSVNFADYER-------AHV-----GLRWSNMWRASSGVNFLVCLLMMLLDT 472 (1833)
Q Consensus 409 ~~~----~~~~~~~~~~~sl~~~~a~~~~~~~~~~~e~-------~~~-----g~~~~~~~~~~~~~~~~~~~~~l~~~~ 472 (1833)
+.. ......+++++.++|..+++.|+..++.... .+. ..+|+. .+..+++|++++
T Consensus 1816 ~~~~~~~~~~~~~l~~if~i~P~f~lg~gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~g~~ll~m~~~~ 1886 (2272)
T TIGR01257 1816 FENNRTLLRFNAMLRKLLIVFPHFCLGRGLIDLALSQAVTDVYAQFGEEHSANPFQWDL---------IGKNLVAMAVEG 1886 (2272)
T ss_pred hcccchhhhHHHHHHHHHeeCchhhhHHHHHHHHHhHHHHHHHHhhcccccCCccchhh---------ccHHHHHHHHHH
Confidence 111 1124567888888999999988877764321 110 011211 234567888999
Q ss_pred HHHHHHHHHHhccccCCCCccccccccccccccCccccccccccchhHHhhhhhhhhhhhhhccccCcchhhhhhhhccc
Q 000224 473 LLYGVIGLYLDKVLPKENGVRYRWNFIFQNCFRRKKSVIKHHVSSAEVKINKKLSKEKECAFALDACEPVVEAISLDMKQ 552 (1833)
Q Consensus 473 ~ly~~l~~yld~v~p~~~G~~~p~~f~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 552 (1833)
++|++|.+++|.-. .... |.+...... . ...+++..+|+.. + ..
T Consensus 1887 iv~flLl~~ie~~~-----~~~~---------~~~~~~~~~----~-~~eD~DV~~Er~r-------------V----~~ 1930 (2272)
T TIGR01257 1887 VVYFLLTLLIQHHF-----FLSR---------WIAEPAKEP----I-FDEDDDVAEERQR-------------I----IS 1930 (2272)
T ss_pred HHHHHHHHHHHhhh-----hhhh---------hccccCcCc----C-CCchhHHHHHHHH-------------H----hc
Confidence 99999999998521 0001 111110000 0 0001111111110 0 00
Q ss_pred cccCcceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHH
Q 000224 553 QEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMD 632 (1833)
Q Consensus 553 ~~~~~~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~ 632 (1833)
.......|+++||+|.|+++ ++.||+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++..+..
T Consensus 1931 ~~~~~~~L~v~nLsK~Y~~~--~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~ 2008 (2272)
T TIGR01257 1931 GGNKTDILRLNELTKVYSGT--SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNIS 2008 (2272)
T ss_pred cCCCCceEEEEEEEEEECCC--CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHH
Confidence 01123579999999999632 2579999999999999999999999999999999999999999999999999876566
Q ss_pred HhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCC
Q 000224 633 EIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGD 712 (1833)
Q Consensus 633 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~ 712 (1833)
+.|+.||||||++.+++.+||+||+.++++++|.+.++.+++++++++.+||.+..++++++|||||||||+||+||+++
T Consensus 2009 ~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~ 2088 (2272)
T TIGR01257 2009 DVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGC 2088 (2272)
T ss_pred HHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 67888999999999999999999999999999988777788899999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhCCcEEEE
Q 000224 713 SKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLT 791 (1833)
Q Consensus 713 p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~~g~gy~l~ 791 (1833)
|+||||||||+||||.+|+.+|++|++++ +|+|||+|||+|+|++.+||||++|++|+++|.|++++||++||.||.++
T Consensus 2089 P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g~g~~l~ 2168 (2272)
T TIGR01257 2089 PPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYIVT 2168 (2272)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHhCCceEEE
Confidence 99999999999999999999999999985 68999999999999999999999999999999999999999999999988
Q ss_pred EEecCCCh------hhHHHHHHHhCCCceEEeeeCcEEEEEecCCCcchHHHHHHHHHHhhhhccccccccccccccCCC
Q 000224 792 LVKSAPDA------SAAADIVYRHIPSALCVSEVGTEITFKLPLASSSSFESMFREIESCIRKSVSKVEADATEDTDYLG 865 (1833)
Q Consensus 792 ~~~~~~~~------~~~~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~ 865 (1833)
+....+.. ....+.+.+.+|++...+.....++|.+|.. .+.++|+.+++. ++.++
T Consensus 2169 i~~~~~~~~~~~~~~~v~~~i~~~fp~a~~~e~~~~~l~~~i~~~---~~~~if~~L~~~---------------k~~l~ 2230 (2272)
T TIGR01257 2169 MKIKSPKDDLLPDLNPVEQFFQGNFPGSVQRERHYNMLQFQVSSS---SLARIFQLLISH---------------KDSLL 2230 (2272)
T ss_pred EEEcCcchhhhhHHHHHHHHHhhcCccceeeccccceEEEEeCcc---cHHHHHHHHHhc---------------CCCCC
Confidence 76443221 1233456677888777666677888999853 577888888763 34688
Q ss_pred eeEEEecCCChHHHHHHHhcCCC
Q 000224 866 IESFGISVTTLEEVFLRVAGCNL 888 (1833)
Q Consensus 866 i~~~~~s~~tlE~vfl~~~~~~~ 888 (1833)
|.+|+++++||||||+++++...
T Consensus 2231 I~dysvsqtSLE~VFl~l~~~q~ 2253 (2272)
T TIGR01257 2231 IEEYSVTQTTLDQVFVNFAKQQT 2253 (2272)
T ss_pred eEEEEcCCCCHHHHHHHHhcccc
Confidence 99999999999999999987543
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-71 Score=705.47 Aligned_cols=207 Identities=23% Similarity=0.279 Sum_probs=182.5
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHHhhcc
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 637 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~ 637 (1833)
.|+++||+|.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +....++.
T Consensus 3 ~l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~ 78 (490)
T PRK10938 3 SLQISQGTFRLSD----TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKL 78 (490)
T ss_pred eEEEEeEEEEcCC----eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHH
Confidence 4899999999953 359999999999999999999999999999999999999999999999987643 33445667
Q ss_pred eEEEccCCCC--C------CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHH
Q 000224 638 LGVCPQYDIL--F------PELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIAL 709 (1833)
Q Consensus 638 ig~~~Q~~~l--~------~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al 709 (1833)
+|+++|++.+ + ..+|++|++.+. ...+++++++++.+||.+..++++++|||||||||+||+||
T Consensus 79 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 150 (490)
T PRK10938 79 VSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE--------VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQAL 150 (490)
T ss_pred hceeccCcchhhcccchhhccccHHHhcccc--------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHH
Confidence 9999998642 1 147888887542 12356788999999999889999999999999999999999
Q ss_pred hCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCH
Q 000224 710 IGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSS 777 (1833)
Q Consensus 710 ~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~ 777 (1833)
+.+|++|||||||+|||+.++++++++|++++ +|+|||++||+++++..+||||++|++|+++..|++
T Consensus 151 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~ 219 (490)
T PRK10938 151 MSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGER 219 (490)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999985 489999999999999999999999999999876654
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-68 Score=738.98 Aligned_cols=221 Identities=20% Similarity=0.318 Sum_probs=185.5
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC---------------------
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP--------------------- 1522 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p--------------------- 1522 (1833)
.|+++||+++|+++ +++++|+|+||+|++||++||+||+||||||++++|.|+++|
T Consensus 1165 ~I~f~nVsF~Y~~~---~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~ 1241 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR---PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQD 1241 (1466)
T ss_pred eEEEEEEEEECCCC---CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccc
Confidence 49999999999752 134699999999999999999999999999999999999998
Q ss_pred ---------------------------------CceEEEEcCeeCCC-ChHHhccceEEEecCCCCCCCCCHHHHHHHHH
Q 000224 1523 ---------------------------------TDGTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYA 1568 (1833)
Q Consensus 1523 ---------------------------------~~G~i~i~G~~i~~-~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~ 1568 (1833)
++|+|.+||.|++. +...+|++||||||++.||+ .|++|||.++.
T Consensus 1242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~ 1320 (1466)
T PTZ00265 1242 YQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGK 1320 (1466)
T ss_pred cccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCC
Confidence 69999999999976 66788999999999999986 79999998752
Q ss_pred HHcCCChhhHHHHHHHHHHHcCCc-----------cccCCCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q 000224 1569 RIKGVAEYRMDDVVMEKLVEFDLL-----------KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK 1637 (1833)
Q Consensus 1569 ~~~g~~~~~~~~~~~~~l~~~~L~-----------~~~~~~~~~LSgG~kqrl~lA~al~~~p~vllLDEPTsgLD~~~~ 1637 (1833)
...+. +++.++++..++. .........||||||||++|||||+++|+|||||||||+||+++.
T Consensus 1321 --~~at~----eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE 1394 (1466)
T PTZ00265 1321 --EDATR----EDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSE 1394 (1466)
T ss_pred --CCCCH----HHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 12232 2344445544443 233345668999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEEC----CEEE-EecChhHHHhh-cCC
Q 000224 1638 RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVG----GQLR-CIGSPQHLKTR-FGN 1696 (1833)
Q Consensus 1638 ~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~----G~i~-~~g~~~~l~~~-~~~ 1696 (1833)
+.+.+.|.++...++ +|+|++||+++.+.. ||||++|++ |+++ +.|++++|.++ .|.
T Consensus 1395 ~~I~~~L~~~~~~~~-~TvIiIaHRlsti~~-aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~ 1457 (1466)
T PTZ00265 1395 KLIEKTIVDIKDKAD-KTIITIAHRIASIKR-SDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGV 1457 (1466)
T ss_pred HHHHHHHHHHhccCC-CEEEEEechHHHHHh-CCEEEEEeCCCCCCCEEEEecCHHHHHhcCCCh
Confidence 999999998742233 589999999998875 999999999 9955 89999999863 443
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-69 Score=618.17 Aligned_cols=223 Identities=26% Similarity=0.479 Sum_probs=200.3
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCC-----CcceEEEcCccCCc---
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP-----TTGDALVFGKNITA--- 629 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~g~~i~~--- 629 (1833)
..+.++||+..|....+.+.||+++||+|++||.+||+|++|||||-+.+.+.|+++- -+|+|.++|.|+-.
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred cceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 5699999999998777788999999999999999999999999999999999999985 37999999999842
Q ss_pred -cHHHhh-cceEEEccCC--CCCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCCcc---cccccCCCChhHHH
Q 000224 630 -DMDEIR-KGLGVCPQYD--ILFPELTVREHLEMFAVL-KGVKEELLESVVAEMVDEVGLADK---VNIVVRALSGGMKR 701 (1833)
Q Consensus 630 -~~~~~r-~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~---~~~~~~~LSgGqkq 701 (1833)
.+..+| .+||++||+| .|.|-.|+...+.-..++ +|+++++.++++.++|+.+|+.+. .+.++++|||||||
T Consensus 85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQ 164 (534)
T COG4172 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQ 164 (534)
T ss_pred HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhh
Confidence 345566 5799999999 588888998887655444 588999999999999999999863 58899999999999
Q ss_pred HHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHH
Q 000224 702 KLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLF 779 (1833)
Q Consensus 702 rl~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~--g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~ 779 (1833)
||.||+||+.+|++||-||||++||..-+.++.++|+++++ |.++++||||+.-+..+||||+||.+|++++.|+.+.
T Consensus 165 RVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~ 244 (534)
T COG4172 165 RVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTET 244 (534)
T ss_pred HHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHH
Confidence 99999999999999999999999999999999999999963 9999999999999999999999999999998887544
Q ss_pred H
Q 000224 780 L 780 (1833)
Q Consensus 780 L 780 (1833)
|
T Consensus 245 l 245 (534)
T COG4172 245 L 245 (534)
T ss_pred H
Confidence 4
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-68 Score=688.44 Aligned_cols=207 Identities=24% Similarity=0.319 Sum_probs=181.9
Q ss_pred cceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHh
Q 000224 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAA 1541 (1833)
Q Consensus 1462 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 1541 (1833)
+.+|+++|++|+|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.
T Consensus 317 ~~~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~--------- 381 (530)
T PRK15064 317 RNALEVENLTKGFDN------GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN--------- 381 (530)
T ss_pred CceEEEEeeEEeeCC------ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc---------
Confidence 357999999999953 45899999999999999999999999999999999999999999999873
Q ss_pred ccceEEEecCCC--CCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHHHHHHHHhc
Q 000224 1542 RRLIGYCPQFDA--LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIAMIG 1618 (1833)
Q Consensus 1542 ~~~ig~~pQ~~~--l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~kqrl~lA~al~~ 1618 (1833)
+++||+||++. +++.+|++|++.++.. . ...++.+.++++.+++. +..++++.+|||||||||+||+||+.
T Consensus 382 -~~i~~~~q~~~~~~~~~~t~~~~~~~~~~----~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~ 455 (530)
T PRK15064 382 -ANIGYYAQDHAYDFENDLTLFDWMSQWRQ----E-GDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQ 455 (530)
T ss_pred -eEEEEEcccccccCCCCCcHHHHHHHhcc----C-CccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhc
Confidence 46999999863 5567999999865321 1 11235677899999994 67899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEE-EecChhHHHhhc
Q 000224 1619 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLR-CIGSPQHLKTRF 1694 (1833)
Q Consensus 1619 ~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~-~~g~~~~l~~~~ 1694 (1833)
+|++|||||||+|||+.+++.+++.|+++ + .|||++|||++++..+|||+++|++|+++ +.|+++++.+..
T Consensus 456 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~-~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~~ 527 (530)
T PRK15064 456 KPNVLVMDEPTNHMDMESIESLNMALEKY----E-GTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRSQ 527 (530)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHC----C-CEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHHh
Confidence 99999999999999999999999999876 2 38999999999999999999999999998 889998887654
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-68 Score=648.03 Aligned_cols=212 Identities=29% Similarity=0.489 Sum_probs=197.1
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCC--ccHHHhh
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT--ADMDEIR 635 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~--~~~~~~r 635 (1833)
+.++++|++|+|+ .+.||+|+||++++||++||+|+||||||||+|+|+|.++||+|+|.++|+.+. ...+..+
T Consensus 7 ~ll~~~~i~K~Fg----gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~ 82 (500)
T COG1129 7 PLLELRGISKSFG----GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALA 82 (500)
T ss_pred ceeeeecceEEcC----CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHh
Confidence 4689999999994 578999999999999999999999999999999999999999999999999885 3455667
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhC
Q 000224 636 KGLGVCPQYDILFPELTVREHLEMFAVLKG----VKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIG 711 (1833)
Q Consensus 636 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~----~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~ 711 (1833)
..|+.++|+..|+|+|||.||+.++..... +++..+.+++.++|+.+|+....++++++||+||||.|+|||||..
T Consensus 83 ~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~ 162 (500)
T COG1129 83 AGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSF 162 (500)
T ss_pred CCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhc
Confidence 899999999999999999999988765432 5778899999999999999755899999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEe
Q 000224 712 DSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKC 773 (1833)
Q Consensus 712 ~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~ 773 (1833)
+++|||||||||+|++...+.+++++++++ +|.+||++||+|+|+.++||||.||+||+.++
T Consensus 163 ~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~ 225 (500)
T COG1129 163 DARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVG 225 (500)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEee
Confidence 999999999999999999999999999997 69999999999999999999999999999764
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-67 Score=683.36 Aligned_cols=208 Identities=27% Similarity=0.374 Sum_probs=178.8
Q ss_pred cceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHh
Q 000224 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAA 1541 (1833)
Q Consensus 1462 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 1541 (1833)
+++|+++|+++.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++ ++
T Consensus 322 ~~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~------- 387 (556)
T PRK11819 322 DKVIEAENLSKSFGD------RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV------- 387 (556)
T ss_pred CeEEEEEeEEEEECC------eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce-------
Confidence 357999999999953 4699999999999999999999999999999999999999999999843 21
Q ss_pred ccceEEEecCC-CCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCcc-ccCCCCCCCChhHHHHHHHHHHHhcC
Q 000224 1542 RRLIGYCPQFD-ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK-HAKKPSFTLSGGNKRKLSVAIAMIGD 1619 (1833)
Q Consensus 1542 ~~~ig~~pQ~~-~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgG~kqrl~lA~al~~~ 1619 (1833)
+|||+||++ .+++.+|++||+.+.....+.... +..+.++++.+++.+ ..++++++|||||||||+||+||+.+
T Consensus 388 --~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~ 463 (556)
T PRK11819 388 --KLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNR--EIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQG 463 (556)
T ss_pred --EEEEEeCchhhcCCCCCHHHHHHhhccccccccc--HHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 499999996 788889999999876433333221 223456899999964 57999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEEC-CEEE-EecChhHHHh
Q 000224 1620 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVG-GQLR-CIGSPQHLKT 1692 (1833)
Q Consensus 1620 p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~-G~i~-~~g~~~~l~~ 1692 (1833)
|++|||||||+|||+.+++.+++.|+++ . + |||++|||+++++.+||||++|++ |++. ..|+.+++.+
T Consensus 464 p~lllLDEPt~~LD~~~~~~l~~~l~~~--~-~--tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~ 533 (556)
T PRK11819 464 GNVLLLDEPTNDLDVETLRALEEALLEF--P-G--CAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEE 533 (556)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHhC--C-C--eEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHH
Confidence 9999999999999999999999999986 2 2 799999999999999999999986 7876 4777776644
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-66 Score=673.97 Aligned_cols=208 Identities=25% Similarity=0.349 Sum_probs=178.0
Q ss_pred cceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHh
Q 000224 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAA 1541 (1833)
Q Consensus 1462 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 1541 (1833)
+++++++|+++.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++ ++
T Consensus 320 ~~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~------- 385 (552)
T TIGR03719 320 DKVIEAENLSKGFGD------KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV------- 385 (552)
T ss_pred CeEEEEeeEEEEECC------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce-------
Confidence 357999999999953 4699999999999999999999999999999999999999999999843 21
Q ss_pred ccceEEEecCC-CCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCcc-ccCCCCCCCChhHHHHHHHHHHHhcC
Q 000224 1542 RRLIGYCPQFD-ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK-HAKKPSFTLSGGNKRKLSVAIAMIGD 1619 (1833)
Q Consensus 1542 ~~~ig~~pQ~~-~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgG~kqrl~lA~al~~~ 1619 (1833)
+|||+||++ .+++.+|+.||+.+.....+.... +..+.++++.+++.+ ..++++.+|||||||||+||+||+.+
T Consensus 386 --~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~ 461 (552)
T TIGR03719 386 --KLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSG 461 (552)
T ss_pred --EEEEEeCCccccCCCCcHHHHHHhhccccccCcc--hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhC
Confidence 599999986 478889999999876433333221 223557899999964 57999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEEC-CEEE-EecChhHHHh
Q 000224 1620 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVG-GQLR-CIGSPQHLKT 1692 (1833)
Q Consensus 1620 p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~-G~i~-~~g~~~~l~~ 1692 (1833)
|++|||||||+|||+.+++.+++.|+++. + |||++|||+++++.+|||+++|++ |+++ ..|+.++.++
T Consensus 462 p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~-~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 462 GNVLLLDEPTNDLDVETLRALEEALLEFA----G-CAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHCC----C-eEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 99999999999999999999999999862 2 799999999999999999999987 5876 5577765543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-65 Score=718.00 Aligned_cols=215 Identities=23% Similarity=0.360 Sum_probs=186.8
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHh
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAA 1541 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 1541 (1833)
..|+++|++++|++ +.+++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+++ +...+
T Consensus 1236 g~I~f~nVsf~Y~~----~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~L 1311 (1622)
T PLN03130 1236 GSIKFEDVVLRYRP----ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDL 1311 (1622)
T ss_pred CcEEEEEEEEEeCC----CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHH
Confidence 46999999999963 23469999999999999999999999999999999999999999999999999987 67789
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-----------cccCCCCCCCChhHHHHH
Q 000224 1542 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-----------KHAKKPSFTLSGGNKRKL 1610 (1833)
Q Consensus 1542 ~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~-----------~~~~~~~~~LSgG~kqrl 1610 (1833)
|++||++||++.||.. |+||||.++. ..++ +++.++++..++. ........+||||||||+
T Consensus 1312 R~~IsiVpQdp~LF~G-TIreNLd~~~---~~td----eei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrl 1383 (1622)
T PLN03130 1312 RKVLGIIPQAPVLFSG-TVRFNLDPFN---EHND----ADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLL 1383 (1622)
T ss_pred HhccEEECCCCccccc-cHHHHhCcCC---CCCH----HHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHH
Confidence 9999999999999975 9999997642 2222 3344555555443 333445568999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000224 1611 SVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690 (1833)
Q Consensus 1611 ~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l 1690 (1833)
+|||||+++|+||||||||++||+++.+.+.+.|++.. ++ +|||+++|+++.+.. ||||++|++|++++.|+|++|
T Consensus 1384 aLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~--~~-~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE~Gt~~eL 1459 (1622)
T PLN03130 1384 SLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KS-CTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENL 1459 (1622)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CC-CEEEEEeCChHHHHh-CCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999873 33 699999999999987 999999999999999999999
Q ss_pred Hhh
Q 000224 1691 KTR 1693 (1833)
Q Consensus 1691 ~~~ 1693 (1833)
.++
T Consensus 1460 l~~ 1462 (1622)
T PLN03130 1460 LSN 1462 (1622)
T ss_pred HhC
Confidence 875
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-65 Score=717.07 Aligned_cols=217 Identities=23% Similarity=0.326 Sum_probs=187.5
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHh
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAA 1541 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 1541 (1833)
..|+++|++++|++ +.+++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+ +...+
T Consensus 1233 g~I~f~nVsf~Y~~----~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~l 1308 (1495)
T PLN03232 1233 GSIKFEDVHLRYRP----GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDL 1308 (1495)
T ss_pred CcEEEEEEEEEECC----CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHH
Confidence 35999999999953 23569999999999999999999999999999999999999999999999999976 56788
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-----------cccCCCCCCCChhHHHHH
Q 000224 1542 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-----------KHAKKPSFTLSGGNKRKL 1610 (1833)
Q Consensus 1542 ~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~-----------~~~~~~~~~LSgG~kqrl 1610 (1833)
|++|+||||++.+|+. |+||||.++. ..++ +++.++++..++. ........+||||||||+
T Consensus 1309 R~~i~iVpQdp~LF~g-TIr~NL~~~~---~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl 1380 (1495)
T PLN03232 1309 RRVLSIIPQSPVLFSG-TVRFNIDPFS---EHND----ADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLL 1380 (1495)
T ss_pred HhhcEEECCCCeeeCc-cHHHHcCCCC---CCCH----HHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHH
Confidence 9999999999999975 9999998642 2232 3344555555543 333445678999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000224 1611 SVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690 (1833)
Q Consensus 1611 ~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l 1690 (1833)
+|||||+++|+||||||||++||+++.+.+.+.|++.. ++ +|||+++|+++.+.. ||||++|++|++++.|++++|
T Consensus 1381 aLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~--~~-~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~Gt~~eL 1456 (1495)
T PLN03232 1381 SLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF--KS-CTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQEL 1456 (1495)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CC-CEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999863 33 689999999999987 999999999999999999999
Q ss_pred HhhcC
Q 000224 1691 KTRFG 1695 (1833)
Q Consensus 1691 ~~~~~ 1695 (1833)
.++.+
T Consensus 1457 l~~~~ 1461 (1495)
T PLN03232 1457 LSRDT 1461 (1495)
T ss_pred HhCCC
Confidence 87643
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-66 Score=611.90 Aligned_cols=211 Identities=28% Similarity=0.497 Sum_probs=198.4
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCC--ccHHHhh
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT--ADMDEIR 635 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~--~~~~~~r 635 (1833)
..+++++++|.|+ ...|.+||||+|++|||+||+|+|||||||||++|.|+++||+|+|+++|+.+. .+.+++|
T Consensus 3 ~~l~~~~itK~f~----~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~ 78 (501)
T COG3845 3 PALEMRGITKRFP----GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIR 78 (501)
T ss_pred ceEEEeccEEEcC----CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHH
Confidence 4799999999995 578999999999999999999999999999999999999999999999999875 5678899
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCC
Q 000224 636 KGLGVCPQYDILFPELTVREHLEMFAVL---KGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGD 712 (1833)
Q Consensus 636 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~---~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~ 712 (1833)
..||+|+||..|++.+||.||+.++..- ..++....++++.++.++.||+-..++++.+||-||||||.|-+||..+
T Consensus 79 ~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~ 158 (501)
T COG3845 79 LGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRG 158 (501)
T ss_pred cCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcC
Confidence 9999999999999999999999987643 2356778899999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEE
Q 000224 713 SKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLK 772 (1833)
Q Consensus 713 p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~ 772 (1833)
|++|||||||+-|-|...++++++|++++ +|+|||++||.++|+.++|||+.||++|+++
T Consensus 159 a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvv 219 (501)
T COG3845 159 ARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV 219 (501)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEE
Confidence 99999999999999999999999999996 5999999999999999999999999999964
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-66 Score=675.22 Aligned_cols=204 Identities=21% Similarity=0.389 Sum_probs=177.0
Q ss_pred cceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHh
Q 000224 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAA 1541 (1833)
Q Consensus 1462 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 1541 (1833)
+.+|+++||+|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++.
T Consensus 310 ~~~l~~~~l~~~y~~------~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------- 374 (638)
T PRK10636 310 NPLLKMEKVSAGYGD------RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG--------- 374 (638)
T ss_pred CceEEEEeeEEEeCC------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC---------
Confidence 357999999999953 46999999999999999999999999999999999999999999998641
Q ss_pred ccceEEEecCC--CCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHHHHHHHHhc
Q 000224 1542 RRLIGYCPQFD--ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIAMIG 1618 (1833)
Q Consensus 1542 ~~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~kqrl~lA~al~~ 1618 (1833)
.++||++|+. .+.+..|+.+++.. .. .....+.+.++|+.+++. +..++++++|||||||||+||++|+.
T Consensus 375 -~~igy~~Q~~~~~l~~~~~~~~~~~~---~~---~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~ 447 (638)
T PRK10636 375 -IKLGYFAQHQLEFLRADESPLQHLAR---LA---PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQ 447 (638)
T ss_pred -EEEEEecCcchhhCCccchHHHHHHH---hC---chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 2599999974 35566778776532 11 122345678899999996 46899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEE-EecChhHHHh
Q 000224 1619 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLR-CIGSPQHLKT 1692 (1833)
Q Consensus 1619 ~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~-~~g~~~~l~~ 1692 (1833)
+|+||||||||+|||+.+++.+.++|+++ . + |||+||||+++++.+||||++|++|+++ +.|+.++...
T Consensus 448 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~-g-tvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 448 RPNLLLLDEPTNHLDLDMRQALTEALIDF---E-G-ALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc---C-C-eEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 99999999999999999999999999986 2 3 8999999999999999999999999997 7899988743
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-64 Score=705.01 Aligned_cols=217 Identities=21% Similarity=0.304 Sum_probs=187.2
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHh
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAA 1541 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 1541 (1833)
..|+++|++++|+.+ ...+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+++ +...+
T Consensus 1283 g~I~f~nVsf~Y~~~----~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~L 1358 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRED----LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDL 1358 (1522)
T ss_pred CcEEEEEEEEEeCCC----CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHH
Confidence 469999999999642 2469999999999999999999999999999999999999999999999999987 66789
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-----------cccCCCCCCCChhHHHHH
Q 000224 1542 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-----------KHAKKPSFTLSGGNKRKL 1610 (1833)
Q Consensus 1542 ~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~-----------~~~~~~~~~LSgG~kqrl 1610 (1833)
|++|||+||++.+|+. |+||||..+. ..++ +++.++++..++. .........||||||||+
T Consensus 1359 R~~i~iVpQdp~LF~g-TIr~NLdp~~---~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl 1430 (1522)
T TIGR00957 1359 RFKITIIPQDPVLFSG-SLRMNLDPFS---QYSD----EEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLV 1430 (1522)
T ss_pred HhcCeEECCCCcccCc-cHHHHcCccc---CCCH----HHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHH
Confidence 9999999999999985 9999997542 2233 3344555555543 233445567999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000224 1611 SVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690 (1833)
Q Consensus 1611 ~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l 1690 (1833)
+|||||+++|+||||||||++||+++.+.+.+.|++.. ++ +|||+++|+++.+.. ||||++|++|++++.|++++|
T Consensus 1431 ~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~--~~-~TvI~IAHRl~ti~~-~DrIlVld~G~IvE~G~~~eL 1506 (1522)
T TIGR00957 1431 CLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF--ED-CTVLTIAHRLNTIMD-YTRVIVLDKGEVAEFGAPSNL 1506 (1522)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CC-CEEEEEecCHHHHHh-CCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999863 33 689999999999886 999999999999999999999
Q ss_pred HhhcC
Q 000224 1691 KTRFG 1695 (1833)
Q Consensus 1691 ~~~~~ 1695 (1833)
.++.|
T Consensus 1507 l~~~~ 1511 (1522)
T TIGR00957 1507 LQQRG 1511 (1522)
T ss_pred HhCCC
Confidence 87633
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-66 Score=689.79 Aligned_cols=566 Identities=30% Similarity=0.449 Sum_probs=417.9
Q ss_pred HHHHHHHHHHHHhHHHHHhHHHHHHHHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccChhh
Q 000224 284 RVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLYMMGLKDGIFHLSWFITYAAQFAVSSGIITACT-MDSLFKYSDKTV 362 (1833)
Q Consensus 284 ~~~~~~~~l~~~~~~~~~v~~iv~EKe~~lke~m~~mGl~~~~~wlsw~i~~~~~~~i~~~i~~~~~-~~~~f~~s~~~~ 362 (1833)
-..++++++.+++..+..+.+.+.||+.|.|+.|+++|+++++||++|+++.++.+++..+++..+. ....+...+..+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~li~e~~~~~~~~~~i~G~~~~~yw~~~~~~d~~~~~l~~~~~~~~~~~f~~~~~~~~~~ 377 (885)
T KOG0059|consen 298 LLGALFLLFVFLLLFSVFLLSLILERQQRLRHQQLIAGLSPSTYWLFALVWDLLLYLLILLILLIFVLIFGFFAGNNTVI 377 (885)
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccchHH
Confidence 3455666666777777778889999999999999999999999999999998877776655443321 112456677889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH----hhhhcc-cCCCchhHHhHHHhhhchhHHHHHHHHH
Q 000224 363 VFTYFFSFGLSAITLSFFISTFFARAKTAVAVGTLSFLGAF----FPYYTV-NDEAVPMVLKVIASLLSPTAFALGSVNF 437 (1833)
Q Consensus 363 ~f~~~~l~~~s~i~~~f~iS~fF~~~~~a~~~~~l~~~~~~----~~~~~~-~~~~~~~~~~~~~sl~~~~a~~~~~~~~ 437 (1833)
+++++++|+.+.+.+.|++|.+|++...|..+..+..++.. +++... .....+....+...+.|++.+..+...+
T Consensus 378 ~~~~~~l~~~s~i~l~y~~s~~f~~~~~~~v~~~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~l 457 (885)
T KOG0059|consen 378 ILLLLLLYIRSAIPLTYILSFIFSKESTASVILSIYNLISGLLVFFAVFILQSFANGRTGDIFSMILVPGFTLFLPLYEL 457 (885)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcCceeehhhHHHHHHHHHHHHHhhhhhcccccHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999999999999999999998766554433222 222211 1112222233333344444333232222
Q ss_pred HH--Hhh---ccCCccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccccccccccccCcccccc
Q 000224 438 AD--YER---AHVGLRWSNMWRASSGVNFLVCLLMMLLDTLLYGVIGLYLDKVLPKENGVRYRWNFIFQNCFRRKKSVIK 512 (1833)
Q Consensus 438 ~~--~e~---~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~ly~~l~~yld~v~p~~~G~~~p~~f~~~~~~w~~~~~~~ 512 (1833)
.. .+. ...|..|.++.......... +.+.+...+.+.+.+...|+..|.+|....++|.++....
T Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~ 527 (885)
T KOG0059|consen 458 SSLAAEGNLNLNDGMSLEVLGNDESFYTLL----------LEWLLPLIGRRYLALVTEGVKDDLFFLLIFVPFKRRMRAL 527 (885)
T ss_pred HHHHHHhhhcchhhhhhhhhcccccccchh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc
Confidence 21 111 23455666654320000000 0011111111112222345555554544444443322100
Q ss_pred ccccchhHHhhhhhhhhhhhhhccccCcchhhhhhhhccccccCcceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEE
Q 000224 513 HHVSSAEVKINKKLSKEKECAFALDACEPVVEAISLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQIL 592 (1833)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~ 592 (1833)
.. .......+...|+..+..... .++ ..........++.++||+|.|+.+.+ |++++|+.|++|||+
T Consensus 528 ~~---~~~~~~~~~~~e~~~v~~e~~---~v~----~~~~~~~~~~~~~~~~L~k~y~~~~~---Av~~ls~~V~~gecf 594 (885)
T KOG0059|consen 528 TQ---NMLKGFEPVEVEKLDVARERN---RVE----TLLFRSSYSSALVLNNLSKVYGGKDG---AVRGLSFAVPPGECF 594 (885)
T ss_pred cc---cccCCCcCcchhhHHHHHHHH---hhh----hhhhcccccceEEEcceeeeecchhh---hhcceEEEecCCceE
Confidence 00 000000000011111000000 000 01111122357999999999975432 999999999999999
Q ss_pred EEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc--cHHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHH
Q 000224 593 ALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA--DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEEL 670 (1833)
Q Consensus 593 ~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~--~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~ 670 (1833)
|++|+|||||||+++||+|..+|++|+++++|+++.. +.+++++.||||||++.+|+.+|.+||+.++++++|+++.+
T Consensus 595 gLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~d 674 (885)
T KOG0059|consen 595 GLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSD 674 (885)
T ss_pred EEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhH
Confidence 9999999999999999999999999999999999976 45569999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CcEEEEE
Q 000224 671 LESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK-GRIILLT 749 (1833)
Q Consensus 671 ~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~-g~tiil~ 749 (1833)
+++.++++++.+||.+..+++++.+||||||||++|.|++++|++++|||||+||||.+||.+|+++++.++ |+.||+|
T Consensus 675 i~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLT 754 (885)
T KOG0059|consen 675 IGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILT 754 (885)
T ss_pred HHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999976 5699999
Q ss_pred cCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhCCcEEEEEEecC-CChhhHHHHHHHhCCCceEEeeeCcEEEEEec
Q 000224 750 THSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKSA-PDASAAADIVYRHIPSALCVSEVGTEITFKLP 828 (1833)
Q Consensus 750 tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~~g~gy~l~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~p 828 (1833)
||.|+|++.+|||++||.+|+++|.|++++||++||.||.+++.... ++.+...+.+.+.+|++....+....+.|.+|
T Consensus 755 SHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG~gy~l~~~~~~~~~~~~v~~~~~~~~p~a~~~~~~~~~~~~~ip 834 (885)
T KOG0059|consen 755 SHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSRYGSGYTLTVRIKELPEVSEVEKLLQNRFPGAVLKERHAGLLAFEIP 834 (885)
T ss_pred cCCHHHHHHHhhhhheeecCeeEEecChHHHHhhcCCcEEEEEEECCCcccchHHHHHHHhCCCcchhhhhhceEEEEcc
Confidence 99999999999999999999999999999999999999999987655 33357778899999999999888888999999
Q ss_pred CCCcchHHHHHHHHHHhhhhccccccccccccccCCCeeEEEecCCChHHHHHHHhcCC
Q 000224 829 LASSSSFESMFREIESCIRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFLRVAGCN 887 (1833)
Q Consensus 829 ~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~tlE~vfl~~~~~~ 887 (1833)
.+......+.|..+|.. ++.+++++|+++++||||||++++...
T Consensus 835 ~~~~~~~~~vF~~le~~---------------~~~~~i~dyslsq~tLe~VFi~~a~~q 878 (885)
T KOG0059|consen 835 KDEVVSLSEVFLALEKA---------------KESFGIEDYSLSQTTLEDVFLILAKTQ 878 (885)
T ss_pred cchhhHHHHHHHHHHHH---------------HHhcCHHHHHHHHhhHHHHHHHHhccc
Confidence 98888888899999875 347899999999999999999998753
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-65 Score=657.82 Aligned_cols=198 Identities=22% Similarity=0.278 Sum_probs=174.7
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhc
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1542 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~ 1542 (1833)
++++++|++|.|++ . .++++||+|++||++||+||||||||||+|+|+|+++|++|+|.++
T Consensus 339 ~~l~~~~ls~~~~~------~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~------------ 399 (590)
T PRK13409 339 TLVEYPDLTKKLGD------F-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE------------ 399 (590)
T ss_pred eEEEEcceEEEECC------E-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe------------
Confidence 47899999999952 2 4999999999999999999999999999999999999999999875
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCE
Q 000224 1543 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPI 1622 (1833)
Q Consensus 1543 ~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~v 1622 (1833)
.++||+||+..+++.+||+|++.+..... .. ...+.++++.++|.+..++++.+|||||||||+||+||+.+|++
T Consensus 400 ~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~--~~---~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~l 474 (590)
T PRK13409 400 LKISYKPQYIKPDYDGTVEDLLRSITDDL--GS---SYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADL 474 (590)
T ss_pred eeEEEecccccCCCCCcHHHHHHHHhhhc--Ch---HHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 14999999988888899999998643221 11 23467889999999889999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecC
Q 000224 1623 VILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS 1686 (1833)
Q Consensus 1623 llLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~ 1686 (1833)
|||||||+|||+.+++.++++|++++++.| +|||++|||++++..+|||+++|+ |++...|+
T Consensus 475 lLLDEPt~~LD~~~~~~l~~~l~~l~~~~g-~tviivsHD~~~~~~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 475 YLLDEPSAHLDVEQRLAVAKAIRRIAEERE-ATALVVDHDIYMIDYISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhCCEEEEEc-Ccceeeee
Confidence 999999999999999999999999975444 589999999999999999999996 57776654
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-63 Score=654.04 Aligned_cols=206 Identities=25% Similarity=0.350 Sum_probs=177.7
Q ss_pred cceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHh
Q 000224 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAA 1541 (1833)
Q Consensus 1462 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 1541 (1833)
+.+|+++||+|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+ |.++
T Consensus 317 ~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~------- 382 (635)
T PRK11147 317 KIVFEMENVNYQIDG------KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL------- 382 (635)
T ss_pred CceEEEeeeEEEECC------eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc-------
Confidence 357999999999953 46999999999999999999999999999999999999999999998 5432
Q ss_pred ccceEEEecCC-CCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHHHHHHHHhcC
Q 000224 1542 RRLIGYCPQFD-ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIAMIGD 1619 (1833)
Q Consensus 1542 ~~~ig~~pQ~~-~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~kqrl~lA~al~~~ 1619 (1833)
+|||++|+. .+++.+||.||+.+........ .....+.++++.+++. +..++++++|||||||||+||+||+.+
T Consensus 383 --~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~ 458 (635)
T PRK11147 383 --EVAYFDQHRAELDPEKTVMDNLAEGKQEVMVN--GRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKP 458 (635)
T ss_pred --EEEEEeCcccccCCCCCHHHHHHhhccccccc--chHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcC
Confidence 499999985 6888999999997643211111 1234577889999996 568999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEE-CCEEEE-ecChhHH
Q 000224 1620 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMV-GGQLRC-IGSPQHL 1690 (1833)
Q Consensus 1620 p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~-~G~i~~-~g~~~~l 1690 (1833)
|++|||||||+|||+.+++.+.++|+++ + .|||++|||++++..+|||+++|+ +|++.. .|+.++.
T Consensus 459 p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~-~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 459 SNLLILDEPTNDLDVETLELLEELLDSY----Q-GTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHhC----C-CeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 9999999999999999999999999875 2 389999999999999999999998 899875 5777665
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-61 Score=679.72 Aligned_cols=215 Identities=20% Similarity=0.328 Sum_probs=186.2
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHh
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAA 1541 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 1541 (1833)
..|+++||+++|+++ .+.+|+||||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+ +...+
T Consensus 1307 G~I~f~nVsf~Y~~~----~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~L 1382 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREG----LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLREL 1382 (1560)
T ss_pred CeEEEEEEEEEeCCC----CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHH
Confidence 359999999999642 3469999999999999999999999999999999999999999999999999987 56789
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccc-----------cCCCCCCCChhHHHHH
Q 000224 1542 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKH-----------AKKPSFTLSGGNKRKL 1610 (1833)
Q Consensus 1542 ~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LSgG~kqrl 1610 (1833)
|++|||+||++.||+. |+||||..+. ..+ ++++.++++..++.+. ......+||||||||+
T Consensus 1383 R~~I~iVpQdp~LF~g-TIreNIdp~~---~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrL 1454 (1560)
T PTZ00243 1383 RRQFSMIPQDPVLFDG-TVRQNVDPFL---EAS----SAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLM 1454 (1560)
T ss_pred HhcceEECCCCccccc-cHHHHhCccc---CCC----HHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHH
Confidence 9999999999999975 9999997532 222 2456666777766543 2234467999999999
Q ss_pred HHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhH
Q 000224 1611 SVAIAMIGD-PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1689 (1833)
Q Consensus 1611 ~lA~al~~~-p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~ 1689 (1833)
+|||||+++ |+||||||||++||+++.+.+.+.|++.. ++ +|||+++|+++.+.. ||||++|++|++++.|++++
T Consensus 1455 aLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~--~~-~TvI~IAHRl~ti~~-~DrIlVLd~G~VvE~Gt~~e 1530 (1560)
T PTZ00243 1455 CMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF--SA-YTVITIAHRLHTVAQ-YDKIIVMDHGAVAEMGSPRE 1530 (1560)
T ss_pred HHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC--CC-CEEEEEeccHHHHHh-CCEEEEEECCEEEEECCHHH
Confidence 999999995 89999999999999999999999999863 23 689999999998875 99999999999999999999
Q ss_pred HHhh
Q 000224 1690 LKTR 1693 (1833)
Q Consensus 1690 l~~~ 1693 (1833)
|.++
T Consensus 1531 Ll~~ 1534 (1560)
T PTZ00243 1531 LVMN 1534 (1560)
T ss_pred HHhC
Confidence 9864
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-60 Score=667.65 Aligned_cols=215 Identities=25% Similarity=0.407 Sum_probs=185.9
Q ss_pred cceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHH
Q 000224 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKA 1540 (1833)
Q Consensus 1462 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~ 1540 (1833)
...|+++||+++|+. +.+.+|+|+||+|++||.+||+|++|||||||+++|.|+++ ++|+|.+||.|+.. ....
T Consensus 1215 ~g~I~f~nVs~~Y~~----~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~ 1289 (1490)
T TIGR01271 1215 GGQMDVQGLTAKYTE----AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQT 1289 (1490)
T ss_pred CCeEEEEEEEEEeCC----CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHH
Confidence 346999999999964 23579999999999999999999999999999999999997 89999999999976 5677
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccC-----------CCCCCCChhHHHH
Q 000224 1541 ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAK-----------KPSFTLSGGNKRK 1609 (1833)
Q Consensus 1541 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgG~kqr 1609 (1833)
+|++|+|+||++.+|+. |+||||..+. ..+ ++++.++++..+|.+... .....||||||||
T Consensus 1290 lR~~is~IpQdp~LF~G-TIR~NLdp~~---~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQr 1361 (1490)
T TIGR01271 1290 WRKAFGVIPQKVFIFSG-TFRKNLDPYE---QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQL 1361 (1490)
T ss_pred HHhceEEEeCCCccCcc-CHHHHhCccc---CCC----HHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHH
Confidence 89999999999999985 9999997542 122 345566777777654322 2334799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhH
Q 000224 1610 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1689 (1833)
Q Consensus 1610 l~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~ 1689 (1833)
++|||||+++|+||||||||++||+.+.+.|.+.|++.. + ++|||++||+++.+.. ||||++|++|++++.|+|++
T Consensus 1362 L~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~--~-~~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE~g~p~~ 1437 (1490)
T TIGR01271 1362 MCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF--S-NCTVILSEHRVEALLE-CQQFLVIEGSSVKQYDSIQK 1437 (1490)
T ss_pred HHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--C-CCEEEEEecCHHHHHh-CCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999863 2 3699999999999876 99999999999999999999
Q ss_pred HHhh
Q 000224 1690 LKTR 1693 (1833)
Q Consensus 1690 l~~~ 1693 (1833)
|.++
T Consensus 1438 Ll~~ 1441 (1490)
T TIGR01271 1438 LLNE 1441 (1490)
T ss_pred HHcC
Confidence 9864
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=615.50 Aligned_cols=206 Identities=27% Similarity=0.408 Sum_probs=176.6
Q ss_pred CcceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHH
Q 000224 1461 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKA 1540 (1833)
Q Consensus 1461 ~~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~ 1540 (1833)
++.+++++|++|.|++ ++.+++++||.|.+|+.+||+||||+|||||+|+|+|...|.+|+|.+.- .
T Consensus 318 g~~vl~~~~~~~~y~~-----~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~-~------- 384 (530)
T COG0488 318 GKLVLEFENVSKGYDG-----GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE-T------- 384 (530)
T ss_pred CCeeEEEeccccccCC-----CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC-c-------
Confidence 4568999999999964 25799999999999999999999999999999999999999999987632 1
Q ss_pred hccceEEEecCC-CCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHHHHHHHHhc
Q 000224 1541 ARRLIGYCPQFD-ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIAMIG 1618 (1833)
Q Consensus 1541 ~~~~ig~~pQ~~-~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~kqrl~lA~al~~ 1618 (1833)
-+|||.+|+. .+.++.|+.|++.-.. +. ..+..+...|.+|++. +...++++.||||||.||.+|+.++.
T Consensus 385 --v~igyf~Q~~~~l~~~~t~~d~l~~~~-----~~-~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~ 456 (530)
T COG0488 385 --VKIGYFDQHRDELDPDKTVLEELSEGF-----PD-GDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQ 456 (530)
T ss_pred --eEEEEEEehhhhcCccCcHHHHHHhhC-----cc-ccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhcc
Confidence 2499999985 4557779999886432 11 1156778899999996 56789999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEe-cChhHHHhh
Q 000224 1619 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCI-GSPQHLKTR 1693 (1833)
Q Consensus 1619 ~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~-g~~~~l~~~ 1693 (1833)
+|++|||||||++||..+++.+.++|.++. | |||+||||.++++++|++++++.+ ++... |+.++....
T Consensus 457 ~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~---G--tvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 457 PPNLLLLDEPTNHLDIESLEALEEALLDFE---G--TVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHhCC---C--eEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 999999999999999999999999999872 3 899999999999999999999998 66554 777665543
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-62 Score=638.31 Aligned_cols=204 Identities=27% Similarity=0.440 Sum_probs=173.0
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhc
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1542 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~ 1542 (1833)
++|+++|+++.|++ .+.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++ +
T Consensus 507 ~~L~~~~ls~~y~~-----~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~----------~ 571 (718)
T PLN03073 507 PIISFSDASFGYPG-----GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA----------K 571 (718)
T ss_pred ceEEEEeeEEEeCC-----CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC----------c
Confidence 57999999999953 24589999999999999999999999999999999999999999999864 2
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHH-HH-HcCCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHHHHHHHHhcC
Q 000224 1543 RLIGYCPQFDALLEYLTVQEHLELY-AR-IKGVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIAMIGD 1619 (1833)
Q Consensus 1543 ~~ig~~pQ~~~l~~~lTv~e~l~~~-~~-~~g~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~kqrl~lA~al~~~ 1619 (1833)
.+|||++|++ .+.+++.++..+. .. ..+.. ++.+.++++.+++. +..++++.+|||||||||+||+||+.+
T Consensus 572 ~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~~~~----~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~ 645 (718)
T PLN03073 572 VRMAVFSQHH--VDGLDLSSNPLLYMMRCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK 645 (718)
T ss_pred eeEEEEeccc--cccCCcchhHHHHHHHhcCCCC----HHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcC
Confidence 3699999985 2345666664332 12 12222 34577899999997 467899999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEE-EecChhHHHh
Q 000224 1620 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLR-CIGSPQHLKT 1692 (1833)
Q Consensus 1620 p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~-~~g~~~~l~~ 1692 (1833)
|++|||||||+|||+.+++.+.+.|+++ + + |||++|||++++..+|||+++|.+|+++ ..|++++.++
T Consensus 646 p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~-g-tvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~~ 714 (718)
T PLN03073 646 PHILLLDEPSNHLDLDAVEALIQGLVLF---Q-G-GVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYKK 714 (718)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHc---C-C-EEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 9999999999999999999999888764 2 3 8999999999999999999999999998 6788877654
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-60 Score=630.79 Aligned_cols=225 Identities=22% Similarity=0.337 Sum_probs=194.4
Q ss_pred cccCCCCcceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeC
Q 000224 1455 VLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDI 1534 (1833)
Q Consensus 1455 v~~~~~~~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i 1534 (1833)
.+.+++.+..|+++|++.+|.. +...||+||||+|++||.+||+|..|||||||+++|-++.+|++|+|.|||.|+
T Consensus 1129 pp~~WP~~G~I~f~~~~~RYrp----~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI 1204 (1381)
T KOG0054|consen 1129 PPPSWPSKGEIEFEDLSLRYRP----NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDI 1204 (1381)
T ss_pred CCCCCCCCCeEEEEEeEEEeCC----CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeec
Confidence 4456677778999999999964 346799999999999999999999999999999999999999999999999999
Q ss_pred CC-ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-----------cccCCCCCCC
Q 000224 1535 RS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-----------KHAKKPSFTL 1602 (1833)
Q Consensus 1535 ~~-~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~-----------~~~~~~~~~L 1602 (1833)
.+ ....+|++++.+||||.||.. |+|.||.-+... ++ +++-++|++.+|. .....-..++
T Consensus 1205 ~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf~e~---sD----~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~ 1276 (1381)
T KOG0054|consen 1205 SKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPFDEY---SD----DEIWEALERCQLKDVVSSLPGGLDSEVSEGGENF 1276 (1381)
T ss_pred ccccHHHHHhcCeeeCCCCceecC-ccccccCccccc---CH----HHHHHHHHHhChHHHHhhCCcCCCceecCCCccC
Confidence 87 678899999999999999975 999999866542 22 2333444444443 3333445689
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEE
Q 000224 1603 SGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLR 1682 (1833)
Q Consensus 1603 SgG~kqrl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~ 1682 (1833)
|-||||-|||||||+++++||+|||+|+++|+++-..+.+.|++-- .++|||.+.|+++.+.. ||||+||++|+++
T Consensus 1277 SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F---~dcTVltIAHRl~TVmd-~DrVlVld~G~v~ 1352 (1381)
T KOG0054|consen 1277 SVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF---KDCTVLTIAHRLNTVMD-SDRVLVLDAGRVV 1352 (1381)
T ss_pred ChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh---cCCeEEEEeeccchhhh-cCeEEEeeCCeEe
Confidence 9999999999999999999999999999999999999999999843 34799999999999998 9999999999999
Q ss_pred EecChhHHHhhcC
Q 000224 1683 CIGSPQHLKTRFG 1695 (1833)
Q Consensus 1683 ~~g~~~~l~~~~~ 1695 (1833)
+.|+|++|.++.+
T Consensus 1353 EfdsP~~Ll~~~~ 1365 (1381)
T KOG0054|consen 1353 EFDSPAELLSDKD 1365 (1381)
T ss_pred ecCChHHHHhCCc
Confidence 9999999987644
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-54 Score=559.86 Aligned_cols=816 Identities=20% Similarity=0.294 Sum_probs=495.3
Q ss_pred cccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCC---CcceEEEcCccCCccHHHhhcceEEEccCCCCCCCC
Q 000224 575 NCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP---TTGDALVFGKNITADMDEIRKGLGVCPQYDILFPEL 651 (1833)
Q Consensus 575 ~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p---~~G~i~i~g~~i~~~~~~~r~~ig~~~Q~~~l~~~l 651 (1833)
...+++|+|.-+++|+.+.++||.|||||||++.|+|-++- ..|+|..+|++...... ++.++|++|+++.++.|
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~--~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP--KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc--CceEEecccccccccee
Confidence 35799999999999999999999999999999999998764 35799999998865433 77899999999999999
Q ss_pred CHHHHHHHHHHhcCC-------CHHH-HHHHHHHHHHHcCCCccccccc-----CCCChhHHHHHHHHHHHhCCCcEEEE
Q 000224 652 TVREHLEMFAVLKGV-------KEEL-LESVVAEMVDEVGLADKVNIVV-----RALSGGMKRKLSLGIALIGDSKVVIL 718 (1833)
Q Consensus 652 Tv~e~l~~~~~~~~~-------~~~~-~~~~v~~~l~~~~L~~~~~~~~-----~~LSgGqkqrl~lA~al~~~p~vliL 718 (1833)
||+|.|.|.++.++. ++.+ ..+..+.+++.+||++..|+.+ +-.|||||+||++|-+++++++++++
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeee
Confidence 999999999998864 1221 2225678999999998877766 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCH-HHHHhhcCEEEEeeCCEEEeecCHHHHHhhhC-CcEEEEEEe
Q 000224 719 DEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSM-DEAEELGDRIAIMANGSLKCCGSSLFLKHQYG-VGYTLTLVK 794 (1833)
Q Consensus 719 DEPtsgLD~~~r~~l~~~l~~~~~--g~tiil~tH~~-~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~~g-~gy~l~~~~ 794 (1833)
||+|.|||..+.-++.+.|+++.+ +.|.+++=|.. +++-.+-|.|.+|.+|+++.+|+.++.+.-+. .||. +.
T Consensus 285 De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~--cP- 361 (1391)
T KOG0065|consen 285 DEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFK--CP- 361 (1391)
T ss_pred ecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCcc--CC-
Confidence 999999999999999999999853 77877777776 78888999999999999999999988876553 3553 11
Q ss_pred cCCChhhHHHHHHHhCCCceEEeeeCcEEEEEecCCCcchHHHHHHHHHHhhhhccccccccccccccCCCeeEEEecCC
Q 000224 795 SAPDASAAADIVYRHIPSALCVSEVGTEITFKLPLASSSSFESMFREIESCIRKSVSKVEADATEDTDYLGIESFGISVT 874 (1833)
Q Consensus 795 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 874 (1833)
......+++.+- ..-+...+...+-.-..|......+.+.+...+..
T Consensus 362 ---~r~~~ADfLt~v-ts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~----------------------------- 408 (1391)
T KOG0065|consen 362 ---PRKGTADFLTEV-TSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDY----------------------------- 408 (1391)
T ss_pred ---CccCHHHHHHHh-hcCccccccccccCCCcccCCHHHHHHHHhcchhh-----------------------------
Confidence 111222232221 11000000000000001111111122221111110
Q ss_pred ChHHHHHHHhcCCCcchhhhhhccccccccccccccCCCCccccccccccCCcccccceeeeeecchhhhhhHHhhhhhh
Q 000224 875 TLEEVFLRVAGCNLDESECISQRNNLVTLDYVSAESDDQAPKRISNCKLFGNYKWVFGFIVTVVQRACTLIVAAVLGFLN 954 (1833)
Q Consensus 875 tlE~vfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 954 (1833)
.++... -+ ...++.... ....
T Consensus 409 ------~~l~~~----------l~---------~~~~~~k~~--~~al-------------------------------- 429 (1391)
T KOG0065|consen 409 ------AKLKKE----------LS---------KPYDKSKKH--KAAL-------------------------------- 429 (1391)
T ss_pred ------HHHHHH----------hc---------chhhhhhcc--chhh--------------------------------
Confidence 000000 00 000000000 0000
Q ss_pred hhcccccccccccchhHHHHHHHHHHHHHhHhccchhHHHHHHHHHHHHHHH-HHHHHhccCCCCCCccccccccCCCcc
Q 000224 955 FLIKKCCTCCIISRSMFWQHCKALFIKRAVSARRDRKTIVFQLLIPAIFLLV-GLLFLKLKPHPDMLSVTFTTSNFNPLL 1033 (1833)
Q Consensus 955 ~~~~~~~~~~~~~~~~~~~q~~al~~Kr~~~~~R~~~~~~~~l~lP~~~~~~-~l~~~~~~~~~~~~~~~l~~~~~~~~~ 1033 (1833)
....-...+|.|+++.+++-++..+||...+++..+.+++..++ +-++.+.. .. ++.
T Consensus 430 --------~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~-~~-------t~~------ 487 (1391)
T KOG0065|consen 430 --------VSSKYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTP-MS-------TTS------ 487 (1391)
T ss_pred --------cCCceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeecc-Cc-------ccc------
Confidence 00001235799999999999999999999888887776654332 22222110 00 000
Q ss_pred CCCCCCCCcccccCchhhhhhhhhhcCCcccccccCCCCCCChHHHHHHHHHhcCCCCcchhhchhHHHHHhhhhcccce
Q 000224 1034 SGGGGGGPIPFDLSWPIANEVSKYIQGGWIQRFKQSSYRFPNAEKALADAVDAAGPTLGPVLLSMSEYLMSSFNESYQSR 1113 (1833)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 1113 (1833)
++ +
T Consensus 488 --------------------------~~---------------------------------------~------------ 490 (1391)
T KOG0065|consen 488 --------------------------GG---------------------------------------Y------------ 490 (1391)
T ss_pred --------------------------cc---------------------------------------h------------
Confidence 00 0
Q ss_pred ecEEEeeccCCCCceeEEEEeCCCCCChHHHHHHHHHHHHHHHhcCCCcceEEEEeecCCCchhhhhhhcchhhhHHHHH
Q 000224 1114 YGAIVMDDQNDDGSLGFTVLHNSSCQHAGPTFINVMNTAILRLATGNRNMTIRTRNHPLPTTQSQQLQRHDLDAFSVSII 1193 (1833)
Q Consensus 1114 ~~~~~~~~~~~~~~~~~~~~~n~~~~hs~p~~ln~~~nailr~~~~~~~~~I~~~~~Plp~~~~~~~~~~~~~~~~~~~~ 1193 (1833)
..++..+..++ ++
T Consensus 491 -------------------------~~~~~lffsll------------------------------------------~~ 503 (1391)
T KOG0065|consen 491 -------------------------SRGGALFFALL------------------------------------------FN 503 (1391)
T ss_pred -------------------------hhhhHHHHHHH------------------------------------------HH
Confidence 00000000000 00
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHhHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccccccCchHHHH
Q 000224 1194 ISIAFSFIPASFAVAIVKEREVKAKQQQLISGVSVLSYWTSTYIWDFISFLFPSSC-AIILFYIFGLDQFVGRGCLLPTV 1272 (1833)
Q Consensus 1194 i~~~~s~i~a~f~~~~V~ER~~k~k~lq~vsGv~~~~YW~s~~l~D~i~~li~~~~-~iii~~~f~~~~~~~~~~~~~~~ 1272 (1833)
...+++=++..|.-.+|.+|+. -.+=..+++|=++..+.|+..-++.+++ .+++++..++.. ..+.++..+
T Consensus 504 ~f~~laEi~~~~~~~pv~~Khr------~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~--~A~rFF~~f 575 (1391)
T KOG0065|consen 504 LFNGLAEIALTFQRLPVFYKHR------DLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKR--NAGRFFIQF 575 (1391)
T ss_pred HHHhHHHHHHHHhhcchHHHhh------cccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCc--chHHHHHHH
Confidence 0111111222233333333322 1233578899999999998876655544 444444544331 223344444
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhHHHH
Q 000224 1273 LIFLGYGLAIASSTYCLTFFFSDHTMAQNVVLLVHFFTGLILMVISFIMGLLEATRSANSLLKNFFRLSPGFCFADGLAS 1352 (1833)
Q Consensus 1273 ll~llyG~a~i~~~Yl~Sf~f~~~~~a~~~~~~i~~~~g~~~~i~~~il~~~~~~~~~~~~l~~~f~l~P~~~l~~gl~~ 1352 (1833)
+++++.-.++..+-=+++-...+...| +.+.|+..+++...-+..-........++|+..+.|.---..+++.
T Consensus 576 L~lf~~~~~~s~lFr~ia~l~~t~~~A-------n~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~ 648 (1391)
T KOG0065|consen 576 LFLFLCQFCMSGLFRFIASLSRTLSIA-------NLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMS 648 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHH-------hhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHH
Confidence 444444444443333333333333222 2333333332222222222223444566777777774222222222
Q ss_pred HHHhhh----c------------ccCC----------------C------CCCccccccchhhHHHHHHHHHHHHHHHHH
Q 000224 1353 LALLRQ----G------------MKDK----------------T------SDGVFDWNVTSASICYLGCESICYFLLTLG 1394 (1833)
Q Consensus 1353 l~~~~~----~------------~~~~----------------~------~~~~~~~~~~g~~i~~l~~~~i~~~lL~l~ 1394 (1833)
-..... . ...+ . .+..+-|-..|+.++|.+.-.+++.+++-+
T Consensus 649 NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~y 728 (1391)
T KOG0065|consen 649 NEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEY 728 (1391)
T ss_pred hhhhcccCCCCCCCCcccccccccccchhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHh
Confidence 111100 0 0000 0 011234555566666665444444333333
Q ss_pred HHhccCcchhhhhHhhhhccccccccCCCCCCCcccccCCCCCCcCCCCCChhhHHHHhhcc----cCCCCcceEEEEeE
Q 000224 1395 LELLPSHKWTLMTIKEWWKGTRHRLCNTPSSYLEPLLQSSSESDTLDLNEDIDVQVERNRVL----SGSVDNAIIYLRNL 1470 (1833)
Q Consensus 1395 le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~dV~~E~~rv~----~~~~~~~~l~v~~l 1470 (1833)
+..... +.... .+++.+... .+....... ..+..+|...+.++..+. .....+.+...+|+
T Consensus 729 l~p~~~-~~~~l----~~~~~~~~~--------~~~~~~~~~--~~~~~~~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl 793 (1391)
T KOG0065|consen 729 LKPLKK-SGAIL----VFKKGKEKK--------KVKSAGSSS--EIEKLDDSSHQEKNKMVLPFTPLSLTFKDVFYWVDL 793 (1391)
T ss_pred cCcccc-cccee----eeccchhhh--------cchhccccc--cccccccccccccccccCCCccccccccceEEEEeC
Confidence 221100 00000 000000000 000000000 000000000000111110 01123345666677
Q ss_pred EEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC--CCceEEEEcCeeCCCChHHhccceEEE
Q 000224 1471 RKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY--PTDGTAFIFGKDIRSDPKAARRLIGYC 1548 (1833)
Q Consensus 1471 ~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~--p~~G~i~i~G~~i~~~~~~~~~~ig~~ 1548 (1833)
.+.-+.. .+++..|+||+=-++||-..||+|++|||||||+++|+|-.. -.+|+|.|+|.+... +..+|.+|||
T Consensus 794 ~~~~~~q--G~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q--~tF~R~~GYv 869 (1391)
T KOG0065|consen 794 PYEMPIQ--GGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ--ETFARVSGYV 869 (1391)
T ss_pred Ccccccc--ccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch--hhhcccccee
Confidence 6655322 145779999999999999999999999999999999999743 246999999998653 5678889999
Q ss_pred ecCCCCCCCCCHHHHHHHHHHHc---CCChhhHHHHHHHHHHHcCCccccCCCCCC----CChhHHHHHHHHHHHhcCC-
Q 000224 1549 PQFDALLEYLTVQEHLELYARIK---GVAEYRMDDVVMEKLVEFDLLKHAKKPSFT----LSGGNKRKLSVAIAMIGDP- 1620 (1833)
Q Consensus 1549 pQ~~~l~~~lTv~e~l~~~~~~~---g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~----LSgG~kqrl~lA~al~~~p- 1620 (1833)
-|+|...+.+||||-|.+.|.+| .++.++..+.++++++.++|++.+|..++. ||.+||+||.||.-|+.+|
T Consensus 870 qQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~ 949 (1391)
T KOG0065|consen 870 EQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPS 949 (1391)
T ss_pred ecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCc
Confidence 99998889999999999999887 345555567899999999999888887777 9999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHH-HHHHHcCEEEEEE-CCEEEEecChhH
Q 000224 1621 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMN-EAQALCTRIGIMV-GGQLRCIGSPQH 1689 (1833)
Q Consensus 1621 ~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~-e~~~l~drv~im~-~G~i~~~g~~~~ 1689 (1833)
.||+|||||||||.++.-.+.+.+++++. .| .||+.|-|... ++-+--||+++|+ .|+.+..|++.+
T Consensus 950 ~ilFLDEPTSGLDsqaA~~i~~~lrkla~-tG-qtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 950 SILFLDEPTSGLDSQAAAIVMRFLRKLAD-TG-QTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred eeEEecCCCCCccHHHHHHHHHHHHHHHh-cC-CeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 99999999999999999999999999974 56 58999999865 3344479999996 578999998754
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-52 Score=448.99 Aligned_cols=220 Identities=30% Similarity=0.496 Sum_probs=208.6
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc--cHHHhhc
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA--DMDEIRK 636 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~--~~~~~r~ 636 (1833)
.|+++||+|+|+ +..+|+|+|++|++||+++|+||+||||||||++|.|+.+|++|+|.++|.++.. +..++|+
T Consensus 2 mi~i~~l~K~fg----~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~ 77 (240)
T COG1126 2 MIEIKNLSKSFG----DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRR 77 (240)
T ss_pred eEEEEeeeEEeC----CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHH
Confidence 589999999994 5679999999999999999999999999999999999999999999999987743 6778999
Q ss_pred ceEEEccCCCCCCCCCHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcE
Q 000224 637 GLGVCPQYDILFPELTVREHLEMFA-VLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 715 (1833)
Q Consensus 637 ~ig~~~Q~~~l~~~lTv~e~l~~~~-~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 715 (1833)
++|+|||+..|||.+||.||+.+.. ..+|.+++++++++.++|+++||.++.+.++.+|||||||||+|||||+.+|++
T Consensus 78 ~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~v 157 (240)
T COG1126 78 KVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKV 157 (240)
T ss_pred hcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCE
Confidence 9999999999999999999998764 568999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 716 VILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 716 liLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
+++|||||+|||+...++.+.+++++ +|.|+|++||+|.+|.++||||+.|++|++++.|+|+++-.
T Consensus 158 mLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~ 225 (240)
T COG1126 158 MLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFD 225 (240)
T ss_pred EeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhc
Confidence 99999999999999999999999996 59999999999999999999999999999999999987643
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-52 Score=451.79 Aligned_cols=297 Identities=27% Similarity=0.463 Sum_probs=246.3
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhcc
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1543 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~~ 1543 (1833)
++++++|+|+|+ ++.||+|+||+|++||++|++|||||||||++|||.|+++||+|+|.++|.+++. ..+.
T Consensus 2 ~L~ie~vtK~Fg------~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~---~~~~ 72 (300)
T COG4152 2 ALEIEGVTKSFG------DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ---EIKN 72 (300)
T ss_pred ceEEecchhccC------ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh---hhhh
Confidence 589999999995 5789999999999999999999999999999999999999999999999998863 4567
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEE
Q 000224 1544 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1623 (1833)
Q Consensus 1544 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~vl 1623 (1833)
+|||+|.+.+||+.+||.|.|.|+++++|++.+++++.+..+|+++++..+..+++.+||.||+||+.+..|++++|+++
T Consensus 73 rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLl 152 (300)
T COG4152 73 RIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELL 152 (300)
T ss_pred hcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhhcCCeEEEEEe
Q 000224 1624 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVK 1703 (1833)
Q Consensus 1624 lLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~~~~~~~~~~~ 1703 (1833)
|||||+|||||.+.+.+.+.|.+++ ++| .|||++||.|+-+|.+|||+++|++|+.+..|+.+++++.+|....+ +.
T Consensus 153 ILDEPFSGLDPVN~elLk~~I~~lk-~~G-atIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~Gkk~~~-ie 229 (300)
T COG4152 153 ILDEPFSGLDPVNVELLKDAIFELK-EEG-ATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGKKRLV-IE 229 (300)
T ss_pred EecCCccCCChhhHHHHHHHHHHHH-hcC-CEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcCCceEE-Ee
Confidence 9999999999999999999999996 455 69999999999999999999999999999999999999999864322 22
Q ss_pred ecCCccccHHHHHHHHHhhcccCCcchhhhhhhhhhhhccccccccCCCceeeecchHHHHHHHHHhhccccceeEeEec
Q 000224 1704 PTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSENATAAEISLSQEMLLIVGRWLGNEERIKTLISS 1783 (1833)
Q Consensus 1704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1783 (1833)
.. ...+.+. .+|..... . ...++.-..++.-++. -..+-+....+.-|+++..+
T Consensus 230 s~----~s~eeL~--------~ipgi~~~------------~-~~~~G~~~i~ie~e~~-a~~ifq~~a~~g~i~~Fe~~ 283 (300)
T COG4152 230 SD----LSLEELA--------NIPGILKI------------T-ETKDGSWRIQIENETV-AREIFQEVARDGYIQRFELQ 283 (300)
T ss_pred cc----CchHHHh--------cCCCceee------------e-eccCCceEeecccchH-HHHHHHHHhccceeEEEeec
Confidence 11 1111111 22211110 0 0111111112221122 22333333356678999999
Q ss_pred CCChhhHHHHhhccc
Q 000224 1784 SSSPDRIFGEQLSEQ 1798 (1833)
Q Consensus 1784 ~~sl~~vf~~~t~~~ 1798 (1833)
.|||+|+|++.+|.+
T Consensus 284 ~PsL~diFi~~~g~~ 298 (300)
T COG4152 284 EPSLHDIFIEKVGGV 298 (300)
T ss_pred CCCHHHHHHHHhccc
Confidence 999999999999875
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-53 Score=446.44 Aligned_cols=225 Identities=34% Similarity=0.528 Sum_probs=214.6
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhcc
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1543 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~~ 1543 (1833)
||++.+++|+|+. ...|++||||++++||++||+|||||||||++|||++++.|++|.|+++|.|..+++..+|+
T Consensus 1 Ml~v~~l~K~y~~-----~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr 75 (245)
T COG4555 1 MLEVTDLTKSYGS-----KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRR 75 (245)
T ss_pred CeeeeehhhhccC-----HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhh
Confidence 5889999999974 34599999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEE
Q 000224 1544 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1623 (1833)
Q Consensus 1544 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~vl 1623 (1833)
+||+++....+|..||++|||.|+++++|+...+++++++++.++++|.+.+|++++.||.||||||+|||||+++|+++
T Consensus 76 ~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~ 155 (245)
T COG4555 76 KIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSIL 155 (245)
T ss_pred hcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeE
Confidence 99999988999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhhcC
Q 000224 1624 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 1695 (1833)
Q Consensus 1624 lLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~~~ 1695 (1833)
+|||||||||..+++.+.+.|++++ +.| .+||++||+|+|++++||||+++++|+++..|+++++..+.+
T Consensus 156 vlDEP~sGLDi~~~r~~~dfi~q~k-~eg-r~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~~ 225 (245)
T COG4555 156 VLDEPTSGLDIRTRRKFHDFIKQLK-NEG-RAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTV 225 (245)
T ss_pred EEcCCCCCccHHHHHHHHHHHHHhh-cCC-cEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHHh
Confidence 9999999999999999999999985 344 589999999999999999999999999999999999987644
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-52 Score=452.09 Aligned_cols=221 Identities=34% Similarity=0.544 Sum_probs=211.4
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHHhhcc
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 637 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~ 637 (1833)
.|+++||+|.|. ++.||+|+||+|++||+++++||+||||||+|+||.++++||+|+|+++|.++.. +..+.|++
T Consensus 1 MI~~~nvsk~y~----~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~ 76 (309)
T COG1125 1 MIEFENVSKRYG----NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRK 76 (309)
T ss_pred CceeeeeehhcC----CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHh
Confidence 378999999995 4579999999999999999999999999999999999999999999999999975 77889999
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCc--ccccccCCCChhHHHHHHHHHHHhCCCcE
Q 000224 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLAD--KVNIVVRALSGGMKRKLSLGIALIGDSKV 715 (1833)
Q Consensus 638 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~--~~~~~~~~LSgGqkqrl~lA~al~~~p~v 715 (1833)
||||-|...|||++||.||+.+...++|.++++++++++++|+.+||+. +.++++++|||||||||.+||||+.+|++
T Consensus 77 IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~i 156 (309)
T COG1125 77 IGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPI 156 (309)
T ss_pred hhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCe
Confidence 9999999999999999999999999999999999999999999999974 78999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q 000224 716 VILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 783 (1833)
Q Consensus 716 liLDEPtsgLD~~~r~~l~~~l~~~~~--g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~ 783 (1833)
+++|||+++|||.+|.++.+.++++++ |+|||++||||+||..+||||++|++|+++..|+|+++.++
T Consensus 157 lLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~ 226 (309)
T COG1125 157 LLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226 (309)
T ss_pred EeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC
Confidence 999999999999999999999999864 99999999999999999999999999999999999988754
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-51 Score=440.88 Aligned_cols=222 Identities=28% Similarity=0.467 Sum_probs=208.6
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC--ChHHh
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS--DPKAA 1541 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~--~~~~~ 1541 (1833)
+|+++||+|+|| +..+|+|||++|++||++.|+||+|||||||+|+|.|+.+|++|+|.++|.++.. +..+.
T Consensus 2 mi~i~~l~K~fg------~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~ 75 (240)
T COG1126 2 MIEIKNLSKSFG------DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKL 75 (240)
T ss_pred eEEEEeeeEEeC------CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHH
Confidence 689999999996 4679999999999999999999999999999999999999999999999987743 45678
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHH-HHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCC
Q 000224 1542 RRLIGYCPQFDALLEYLTVQEHLELYA-RIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDP 1620 (1833)
Q Consensus 1542 ~~~ig~~pQ~~~l~~~lTv~e~l~~~~-~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p 1620 (1833)
|+++|+|+|+..|||.+||.||+.+.. ..+|.+++++++.+.++|+++||.++++.+|.+|||||||||+|||||+.+|
T Consensus 76 R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P 155 (240)
T COG1126 76 RRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDP 155 (240)
T ss_pred HHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCC
Confidence 999999999999999999999998754 4579999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000224 1621 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693 (1833)
Q Consensus 1621 ~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~ 1693 (1833)
+++++|||||+|||+...++.+.++++++ +| .|.|++||+|.++..+||||+.|++|++++.|+|+++...
T Consensus 156 ~vmLFDEPTSALDPElv~EVL~vm~~LA~-eG-mTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~ 226 (240)
T COG1126 156 KVMLFDEPTSALDPELVGEVLDVMKDLAE-EG-MTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226 (240)
T ss_pred CEEeecCCcccCCHHHHHHHHHHHHHHHH-cC-CeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence 99999999999999999999999999974 55 7999999999999999999999999999999999998754
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-50 Score=478.07 Aligned_cols=290 Identities=37% Similarity=0.652 Sum_probs=241.6
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhcc
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1543 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~~ 1543 (1833)
+++++||+|+|++ ++.||+||||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|.++..+..+.++
T Consensus 4 ~i~~~~l~k~~~~-----~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~ 78 (293)
T COG1131 4 VIEVRNLTKKYGG-----DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRR 78 (293)
T ss_pred eeeecceEEEeCC-----CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHh
Confidence 5789999999962 36799999999999999999999999999999999999999999999999999877778899
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEE
Q 000224 1544 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1623 (1833)
Q Consensus 1544 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~vl 1623 (1833)
+|||+||++.+++.+||+|||.+++.+++.+....+++++++++.++|.+..++++++||+||||||+||+||+++|++|
T Consensus 79 ~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~ll 158 (293)
T COG1131 79 RIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELL 158 (293)
T ss_pred heEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999999999999999876556678999999999998778999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhhcCCeEEEEEe
Q 000224 1624 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVK 1703 (1833)
Q Consensus 1624 lLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~~~~~~~~~~~ 1703 (1833)
||||||+||||.+++.+|++|++++++ |++||+++||.++|++.+||||++|++|++++.|+++++...++....+...
T Consensus 159 iLDEPt~GLDp~~~~~~~~~l~~l~~~-g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~~~~~~~~~ 237 (293)
T COG1131 159 ILDEPTSGLDPESRREIWELLRELAKE-GGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELE 237 (293)
T ss_pred EECCCCcCCCHHHHHHHHHHHHHHHhC-CCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHhhccCceEEEe
Confidence 999999999999999999999999754 4479999999999999999999999999999999999998887654433332
Q ss_pred ecCCccccHHHHHHHHHhhcccCCcchhhhhhhhhhhhccccccccCCCceeeecchHHHHHHHHHhhccccceeEeEec
Q 000224 1704 PTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSENATAAEISLSQEMLLIVGRWLGNEERIKTLISS 1783 (1833)
Q Consensus 1704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1783 (1833)
..... . .. . ... . .... + .............+...+..+...
T Consensus 238 ~~~~~-~--~~---~-~~~---~---------------~~~~-----~--------~~~~~~~~~~~~~~~~~~~~~~~~ 279 (293)
T COG1131 238 PERLE-L--AE---L-LEG---L---------------KLVK-----G--------EEELAEILEALLEEGVKIESIEVK 279 (293)
T ss_pred ccccc-c--hh---h-hhc---c---------------cccc-----c--------chhHHHHHHHHHHcCCceeeeecC
Confidence 21100 0 00 0 000 0 0000 0 122223333344456666788999
Q ss_pred CCChhhHHHHhhcc
Q 000224 1784 SSSPDRIFGEQLSE 1797 (1833)
Q Consensus 1784 ~~sl~~vf~~~t~~ 1797 (1833)
.++|+++|+.++++
T Consensus 280 ~~~l~~~~~~~~~~ 293 (293)
T COG1131 280 EPSLEDVFLELTGR 293 (293)
T ss_pred CCCHHHHHHHHccC
Confidence 99999999998863
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=434.74 Aligned_cols=223 Identities=32% Similarity=0.524 Sum_probs=215.0
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcceE
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 639 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 639 (1833)
+++.+|+|+|++ .+.|++|+||++++|||+||+|+|||||||+|+||++++.|++|.|+++|.|...++...|++||
T Consensus 2 l~v~~l~K~y~~---~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS---KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC---HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcc
Confidence 789999999975 34599999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEEe
Q 000224 640 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 719 (1833)
Q Consensus 640 ~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 719 (1833)
+++-+..++..||++|||.|++++.|+.+.+++++++++.+.++|.+.+|++++.||-||||||+|||||+++|++++||
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlD 158 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLD 158 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEc
Confidence 99988899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhC
Q 000224 720 EPTSGMDPYSMRLTWQLIKKIKK-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 785 (1833)
Q Consensus 720 EPtsgLD~~~r~~l~~~l~~~~~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~~g 785 (1833)
|||||||..+++.+.+.+++++. |++||++||.|+|++.+||||+++++|+++..|++..++.+.+
T Consensus 159 EP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~~ 225 (245)
T COG4555 159 EPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTV 225 (245)
T ss_pred CCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHHh
Confidence 99999999999999999999985 9999999999999999999999999999999999999887654
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-51 Score=445.71 Aligned_cols=223 Identities=34% Similarity=0.542 Sum_probs=213.0
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhc
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAAR 1542 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~~ 1542 (1833)
||+++|++|+|+ ++.||+|+||+|++||++.++||+||||||++|||.++++||+|+|+++|++++. +..++|
T Consensus 1 MI~~~nvsk~y~------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LR 74 (309)
T COG1125 1 MIEFENVSKRYG------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELR 74 (309)
T ss_pred CceeeeeehhcC------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHH
Confidence 578999999996 4679999999999999999999999999999999999999999999999999987 678899
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc--cccCCCCCCCChhHHHHHHHHHHHhcCC
Q 000224 1543 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL--KHAKKPSFTLSGGNKRKLSVAIAMIGDP 1620 (1833)
Q Consensus 1543 ~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LSgG~kqrl~lA~al~~~p 1620 (1833)
++|||+-|..+|||++||.||+.+.-.+.|.++++++++++++|+.+||. ++++|++++|||||||||.+||||+.+|
T Consensus 75 r~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP 154 (309)
T COG1125 75 RKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADP 154 (309)
T ss_pred HhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999997 4899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000224 1621 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693 (1833)
Q Consensus 1621 ~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~ 1693 (1833)
+||+||||+++|||.+|..+.+.++++.++-| +|||++||||+|+..++|||++|++|+++..++|+++..+
T Consensus 155 ~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~-kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~ 226 (309)
T COG1125 155 PILLMDEPFGALDPITRKQLQEEIKELQKELG-KTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226 (309)
T ss_pred CeEeecCCccccChhhHHHHHHHHHHHHHHhC-CEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC
Confidence 99999999999999999999999999987665 6899999999999999999999999999999999998764
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-51 Score=457.42 Aligned_cols=223 Identities=30% Similarity=0.500 Sum_probs=211.0
Q ss_pred eEEEEeeEEEecC-CCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc----cHHH
Q 000224 559 CIQIRKLHKVYAT-KRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA----DMDE 633 (1833)
Q Consensus 559 ~i~i~~l~k~y~~-~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~----~~~~ 633 (1833)
.|++++|+|.|.. +.+...||+|+||+|++|||+||+|++|||||||++++.|+.+|++|+|.++|.++.. ...+
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 3789999999987 3335689999999999999999999999999999999999999999999999998852 5678
Q ss_pred hhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCC
Q 000224 634 IRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDS 713 (1833)
Q Consensus 634 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p 713 (1833)
.|++||++|||..|+...||+||++|..++.|.+++++++++.++|+.+||+++.++++.+|||||||||+|||||+.+|
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P 160 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNP 160 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 714 KVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 714 ~vliLDEPtsgLD~~~r~~l~~~l~~~~~--g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
+||+.|||||+|||.+.+.+.++|+++.+ |-||+++||.||.+..+|||+++|++|++++.|+..++-
T Consensus 161 ~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 161 KILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred CEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999953 999999999999999999999999999999999976653
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-49 Score=475.42 Aligned_cols=225 Identities=40% Similarity=0.641 Sum_probs=209.2
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhc
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1542 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~ 1542 (1833)
.+++++||+|+|+ ++.||+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.......+
T Consensus 6 ~~i~i~~l~k~~~------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~ 79 (306)
T PRK13537 6 APIDFRNVEKRYG------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHAR 79 (306)
T ss_pred ceEEEEeEEEEEC------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHH
Confidence 5799999999995 3569999999999999999999999999999999999999999999999999977666678
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCE
Q 000224 1543 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPI 1622 (1833)
Q Consensus 1543 ~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~v 1622 (1833)
++||||||++.+++.+|++||+.+++..+|.+..+..+++.++++.++|.+..++++++|||||||||+||+||+++|++
T Consensus 80 ~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~l 159 (306)
T PRK13537 80 QRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDV 159 (306)
T ss_pred hcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCE
Confidence 89999999999999999999999988888877666667788999999999899999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhhcC
Q 000224 1623 VILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 1695 (1833)
Q Consensus 1623 llLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~~~ 1695 (1833)
|||||||+||||.+++.+|++|++++ ++| +|||++||+++|++.+||||++|++|++++.|++++++++..
T Consensus 160 llLDEPt~gLD~~~~~~l~~~l~~l~-~~g-~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~~~ 230 (306)
T PRK13537 160 LVLDEPTTGLDPQARHLMWERLRSLL-ARG-KTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIESEI 230 (306)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHH-hCC-CEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhccC
Confidence 99999999999999999999999996 344 689999999999999999999999999999999999987643
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=455.53 Aligned_cols=228 Identities=28% Similarity=0.481 Sum_probs=213.7
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC----ChH
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS----DPK 1539 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~----~~~ 1539 (1833)
||++++++|.|+.+ ..+...||+||||+|++|||+||+|.+|||||||+|++.++.+|++|+|.++|.++.. ...
T Consensus 1 mI~l~~vsK~~~~~-~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr 79 (339)
T COG1135 1 MIELENVSKTFGQT-GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELR 79 (339)
T ss_pred CeEEEeeeeeeccC-CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHH
Confidence 58999999999864 2245679999999999999999999999999999999999999999999999998864 235
Q ss_pred HhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcC
Q 000224 1540 AARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1619 (1833)
Q Consensus 1540 ~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~ 1619 (1833)
..|++||+++|+..|+...||.||+.|...+.|.+++++++++.++|+.+||.+++++++.+|||||||||+|||||+.+
T Consensus 80 ~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~ 159 (339)
T COG1135 80 QLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANN 159 (339)
T ss_pred HHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000224 1620 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693 (1833)
Q Consensus 1620 p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~ 1693 (1833)
|+||+.|||||+|||++.+.+.++|++++++.| .||+++||.|+-+..+||||++|++|++++.|+..++...
T Consensus 160 P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lg-lTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~ 232 (339)
T COG1135 160 PKILLCDEATSALDPETTQSILELLKDINRELG-LTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFAN 232 (339)
T ss_pred CCEEEecCccccCChHHHHHHHHHHHHHHHHcC-CEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcC
Confidence 999999999999999999999999999987765 8999999999999999999999999999999999887653
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-48 Score=470.51 Aligned_cols=228 Identities=38% Similarity=0.629 Sum_probs=209.3
Q ss_pred CcceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHH
Q 000224 1461 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKA 1540 (1833)
Q Consensus 1461 ~~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~ 1540 (1833)
...+|+++||+|+|+ ++.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++......
T Consensus 38 ~~~~i~i~nl~k~y~------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~ 111 (340)
T PRK13536 38 STVAIDLAGVSKSYG------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARL 111 (340)
T ss_pred CceeEEEEEEEEEEC------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHH
Confidence 446899999999995 35699999999999999999999999999999999999999999999999998765566
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCC
Q 000224 1541 ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDP 1620 (1833)
Q Consensus 1541 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p 1620 (1833)
.++.|||+||++.+++.+|++||+.+++..++.+..+..++++++++.++|.+..++++++|||||||||+||+||+++|
T Consensus 112 ~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P 191 (340)
T PRK13536 112 ARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDP 191 (340)
T ss_pred HhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCC
Confidence 78899999999999999999999998888877665555667788999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhhcCC
Q 000224 1621 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN 1696 (1833)
Q Consensus 1621 ~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~~~~ 1696 (1833)
++|||||||+||||.+++.+|++|+++++ +| +|||++||++++++.+||||++|++|++++.|++++++++...
T Consensus 192 ~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g-~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~~~~ 265 (340)
T PRK13536 192 QLLILDEPTTGLDPHARHLIWERLRSLLA-RG-KTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHIG 265 (340)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHh-CC-CEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhhccC
Confidence 99999999999999999999999999964 44 5899999999999999999999999999999999999876543
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=463.34 Aligned_cols=229 Identities=43% Similarity=0.736 Sum_probs=214.7
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcce
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 638 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~i 638 (1833)
.++++||+|.|+. ++.||+||||++++||++||+||||||||||+++|+|+++|++|+|.++|.++..+..+.|++|
T Consensus 4 ~i~~~~l~k~~~~---~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG---DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC---CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhhe
Confidence 5889999999952 3579999999999999999999999999999999999999999999999999987777889999
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEE
Q 000224 639 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVIL 718 (1833)
Q Consensus 639 g~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliL 718 (1833)
||+||++.+++.+||+|||.|++.+++.+.+..+++++++++.+||.+..++++++||+||||||+||+||+++|++|||
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliL 160 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLIL 160 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999999999999987666678999999999999877899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhC-C-cEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhCCcEEE
Q 000224 719 DEPTSGMDPYSMRLTWQLIKKIKK-G-RIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTL 790 (1833)
Q Consensus 719 DEPtsgLD~~~r~~l~~~l~~~~~-g-~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~~g~gy~l 790 (1833)
||||+||||.+|+.+|++|+++++ | +||+++||.++|++.+||||++|++|+++++|++.+++..++.....
T Consensus 161 DEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~~~~~~ 234 (293)
T COG1131 161 DEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVI 234 (293)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHhhccCceE
Confidence 999999999999999999999964 5 89999999999999999999999999999999999999887765443
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-48 Score=463.45 Aligned_cols=230 Identities=36% Similarity=0.594 Sum_probs=213.0
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcc
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 637 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ 637 (1833)
..++++||+|.|+ ++.||+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++.....+.|++
T Consensus 6 ~~i~i~~l~k~~~----~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ 81 (306)
T PRK13537 6 APIDFRNVEKRYG----DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQR 81 (306)
T ss_pred ceEEEEeEEEEEC----CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhc
Confidence 4699999999995 356999999999999999999999999999999999999999999999999987655667889
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEE
Q 000224 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVI 717 (1833)
Q Consensus 638 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vli 717 (1833)
||||||++.+++.+||+||+.+++..+|.+..+.+++++++++.++|.+..++++++||||||||++||+||+++|++||
T Consensus 82 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lll 161 (306)
T PRK13537 82 VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLV 161 (306)
T ss_pred EEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEE
Confidence 99999999999999999999998888888777777889999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhCCcEEEE
Q 000224 718 LDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLT 791 (1833)
Q Consensus 718 LDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~~g~gy~l~ 791 (1833)
|||||+||||.+|+++|++|++++ +|+|||++||+++|++.+||||++|++|++++.|++.++++.......+.
T Consensus 162 LDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~~~~~~~~~ 236 (306)
T PRK13537 162 LDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIESEIGCDVIE 236 (306)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhccCCCeEEE
Confidence 999999999999999999999986 58999999999999999999999999999999999999987754443333
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-49 Score=424.56 Aligned_cols=294 Identities=27% Similarity=0.494 Sum_probs=250.8
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcce
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 638 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~i 638 (1833)
++++++|+|+| +++.||+|+||++++|+|+|++|||||||||+++||.|+++||+|+|.++|.+++. ..+.+|
T Consensus 2 ~L~ie~vtK~F----g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~---~~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSF----GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ---EIKNRI 74 (300)
T ss_pred ceEEecchhcc----CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh---hhhhhc
Confidence 48899999999 45679999999999999999999999999999999999999999999999998864 456789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEE
Q 000224 639 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVIL 718 (1833)
Q Consensus 639 g~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliL 718 (1833)
||.|.+..|++.+||.|.|.|+++++|++.++++++++.+|+++++..+..+++.+||-|++||+++-.|++++|+++||
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlIL 154 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLIL 154 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhCCcEEEEEEecCC
Q 000224 719 DEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKSAP 797 (1833)
Q Consensus 719 DEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~~g~gy~l~~~~~~~ 797 (1833)
|||+|||||.+.+.+.+.+.+++ +|.|||++||.|+.++++||++++|++|+.+..|+....++.||.--. .+. ...
T Consensus 155 DEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~Gkk~~-~ie-s~~ 232 (300)
T COG4152 155 DEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGKKRL-VIE-SDL 232 (300)
T ss_pred cCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcCCceE-EEe-ccC
Confidence 99999999999999999999997 599999999999999999999999999999999999999999987432 222 221
Q ss_pred ChhhHHHHHHHhCCCceEEeee-CcEEEEEecCCCcchHHHHHHHHHHhhhhccccccccccccccCCCeeEEEecCCCh
Q 000224 798 DASAAADIVYRHIPSALCVSEV-GTEITFKLPLASSSSFESMFREIESCIRKSVSKVEADATEDTDYLGIESFGISVTTL 876 (1833)
Q Consensus 798 ~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~tl 876 (1833)
..++ ...+|+....... .+..... .++......+|+.+.. ..-|..|.+..+||
T Consensus 233 s~ee-----L~~ipgi~~~~~~~~G~~~i~--ie~e~~a~~ifq~~a~------------------~g~i~~Fe~~~PsL 287 (300)
T COG4152 233 SLEE-----LANIPGILKITETKDGSWRIQ--IENETVAREIFQEVAR------------------DGYIQRFELQEPSL 287 (300)
T ss_pred chHH-----HhcCCCceeeeeccCCceEee--cccchHHHHHHHHHhc------------------cceeEEEeecCCCH
Confidence 1111 2345665544432 2222222 2333344556655433 35688999999999
Q ss_pred HHHHHHHhcC
Q 000224 877 EEVFLRVAGC 886 (1833)
Q Consensus 877 E~vfl~~~~~ 886 (1833)
+|+|+--++.
T Consensus 288 ~diFi~~~g~ 297 (300)
T COG4152 288 HDIFIEKVGG 297 (300)
T ss_pred HHHHHHHhcc
Confidence 9999966543
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-49 Score=464.67 Aligned_cols=204 Identities=23% Similarity=0.323 Sum_probs=168.4
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhc
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1542 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~ 1542 (1833)
+++.+.|+++.|.+ +..++++++|.|+.++.++++||||||||||+|+++|++.|+.|.|.-.- .
T Consensus 388 pvi~~~nv~F~y~~-----~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~----------H 452 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSD-----NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHS----------H 452 (614)
T ss_pred CeEEEeccccCCCC-----cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccc----------c
Confidence 57889999999964 23689999999999999999999999999999999999999999975432 2
Q ss_pred cceEEEecC--CCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHHHHHHHHhcC
Q 000224 1543 RLIGYCPQF--DALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIAMIGD 1619 (1833)
Q Consensus 1543 ~~ig~~pQ~--~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~kqrl~lA~al~~~ 1619 (1833)
.++++.-|+ ..+.-+.++-|++. .. .++....+.+..+|.++||+ +..+.+.++||+|||+||.+|++++..
T Consensus 453 ~~~~~y~Qh~~e~ldl~~s~le~~~---~~--~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kq 527 (614)
T KOG0927|consen 453 NKLPRYNQHLAEQLDLDKSSLEFMM---PK--FPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQ 527 (614)
T ss_pred ccchhhhhhhHhhcCcchhHHHHHH---Hh--ccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcC
Confidence 236666676 34444567766653 21 12223356678899999998 667899999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEE-EecChhHHH
Q 000224 1620 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLR-CIGSPQHLK 1691 (1833)
Q Consensus 1620 p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~-~~g~~~~l~ 1691 (1833)
|.+|+|||||+|||..+...+.+.|.++ .| +||++|||+..+..++++|.+..+|.+. ..|+...-+
T Consensus 528 P~lLlLDEPtnhLDi~tid~laeaiNe~---~G--gvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk 595 (614)
T KOG0927|consen 528 PHLLLLDEPTNHLDIETIDALAEAINEF---PG--GVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYK 595 (614)
T ss_pred CcEEEecCCCcCCCchhHHHHHHHHhcc---CC--ceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHH
Confidence 9999999999999999999999999886 23 5999999999999999999999998875 456654433
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-47 Score=460.00 Aligned_cols=231 Identities=37% Similarity=0.588 Sum_probs=212.8
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcc
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 637 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ 637 (1833)
..|+++||+|.|+ ++.||+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.......++.
T Consensus 40 ~~i~i~nl~k~y~----~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ 115 (340)
T PRK13536 40 VAIDLAGVSKSYG----DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARAR 115 (340)
T ss_pred eeEEEEEEEEEEC----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhcc
Confidence 4699999999995 346999999999999999999999999999999999999999999999999987655667889
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEE
Q 000224 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVI 717 (1833)
Q Consensus 638 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vli 717 (1833)
+|||||++.+++.+||.||+.+++..++.+..+.+++++++++.+||.+..++++++||||||||++||+||+++|++||
T Consensus 116 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLi 195 (340)
T PRK13536 116 IGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLI 195 (340)
T ss_pred EEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999999988877777666667788899999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhCCcEEEEE
Q 000224 718 LDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTL 792 (1833)
Q Consensus 718 LDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~~g~gy~l~~ 792 (1833)
|||||+||||.+|+++|++|++++ +|+|||++||++++++.+||||++|++|++++.|++.++++.+...+...+
T Consensus 196 LDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~~~~~~~~~~ 271 (340)
T PRK13536 196 LDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHIGCQVIEI 271 (340)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhhccCceEEEE
Confidence 999999999999999999999986 589999999999999999999999999999999999999887655444433
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=425.18 Aligned_cols=221 Identities=33% Similarity=0.566 Sum_probs=208.3
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc----cHHH
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA----DMDE 633 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~----~~~~ 633 (1833)
..|++++|+|+| |++.+++|+||+|++||+++++|++|+|||||+++|.|+++|++|+|.++|.++.. ...+
T Consensus 7 ~~I~vr~v~~~f----G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 7 PLIEVRGVTKSF----GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred ceEEEeeeeeec----CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHH
Confidence 579999999999 45679999999999999999999999999999999999999999999999999853 4457
Q ss_pred hhcceEEEccCCCCCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCChhHHHHHHHHHHHhC
Q 000224 634 IRKGLGVCPQYDILFPELTVREHLEMFAVL-KGVKEELLESVVAEMVDEVGLADK-VNIVVRALSGGMKRKLSLGIALIG 711 (1833)
Q Consensus 634 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~-~~~~~~~LSgGqkqrl~lA~al~~ 711 (1833)
+|+++|+++|+..||..|||+||+.|..+- ..++++.+++.+..-|+.+||... .+..+++|||||++|++||||++.
T Consensus 83 ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAial 162 (263)
T COG1127 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIAL 162 (263)
T ss_pred HHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhc
Confidence 899999999999999999999999997654 468899999999999999999987 899999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 712 DSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 712 ~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~--g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
+|+++++||||+||||.+...+-++|+++++ |.|++++|||++++..+|||++++.+|+++..|+++++.+
T Consensus 163 dPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 163 DPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred CCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999974 8999999999999999999999999999999999999865
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=423.89 Aligned_cols=224 Identities=30% Similarity=0.479 Sum_probs=208.6
Q ss_pred cceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC----
Q 000224 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD---- 1537 (1833)
Q Consensus 1462 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~---- 1537 (1833)
+++|++++|+|+|+ ++.+++||||+|++||++||+||+|+|||||+|.|.|+++|++|+|.++|+++..-
T Consensus 6 ~~~I~vr~v~~~fG------~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~ 79 (263)
T COG1127 6 EPLIEVRGVTKSFG------DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEE 79 (263)
T ss_pred cceEEEeeeeeecC------CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHH
Confidence 46899999999995 46799999999999999999999999999999999999999999999999998652
Q ss_pred hHHhccceEEEecCCCCCCCCCHHHHHHHHHHH-cCCChhhHHHHHHHHHHHcCCccc-cCCCCCCCChhHHHHHHHHHH
Q 000224 1538 PKAARRLIGYCPQFDALLEYLTVQEHLELYARI-KGVAEYRMDDVVMEKLVEFDLLKH-AKKPSFTLSGGNKRKLSVAIA 1615 (1833)
Q Consensus 1538 ~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~-~g~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgG~kqrl~lA~a 1615 (1833)
..++|+++|+++|+-+||..+||+||+.|..+- ..++++.+++.+...|+.+||... +++.+++|||||++|++||||
T Consensus 80 ~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARA 159 (263)
T COG1127 80 LYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARA 159 (263)
T ss_pred HHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHH
Confidence 235789999999999999999999999997654 468888888999999999999876 999999999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1616 MIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1616 l~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
++.||++|++||||+||||.+...+-++|++++++-| .|++++|||++++..+|||++++.+|+++..|+++++.+
T Consensus 160 ialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg-~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 160 IALDPELLFLDEPTSGLDPISAGVIDELIRELNDALG-LTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred HhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhC-CEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999986654 799999999999999999999999999999999999875
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-47 Score=453.98 Aligned_cols=290 Identities=32% Similarity=0.522 Sum_probs=233.4
Q ss_pred ccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcceEEEccCCCCCCCCCHHH
Q 000224 576 CCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVRE 655 (1833)
Q Consensus 576 ~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e 655 (1833)
+.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.......|+.+|||||++.+++.+||+|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 85 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRE 85 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHH
Confidence 46999999999999999999999999999999999999999999999999986555566788999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHH
Q 000224 656 HLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ 735 (1833)
Q Consensus 656 ~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~ 735 (1833)
|+.+++..++.+..+.+++++++++.+||.+..++++++|||||||||+||+||+++|++|||||||+||||.+++.+|+
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~ 165 (302)
T TIGR01188 86 NLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWD 165 (302)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 99998888887777777889999999999998999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhCCcEEEEEEecCCC-hhhHHHHH----HHh
Q 000224 736 LIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKSAPD-ASAAADIV----YRH 809 (1833)
Q Consensus 736 ~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~~g~gy~l~~~~~~~~-~~~~~~~~----~~~ 809 (1833)
+|++++ +|+|||++||++++++.+||||++|++|++++.|++.+++++++..+ +.+...... ........ ..+
T Consensus 166 ~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (302)
T TIGR01188 166 YIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDT-LESRPRDIQSLKVEVSMLIAELGET 244 (302)
T ss_pred HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHhcCCce-EEEEecCchhhhhhhhHHHhhhhhc
Confidence 999986 58999999999999999999999999999999999999988876543 222221111 11000111 111
Q ss_pred CCCceEEeeeCcEEEEEecCCCcchHHHHHHHHHHhhhhccccccccccccccCCCeeEEEecCCChHHHHHHHh
Q 000224 810 IPSALCVSEVGTEITFKLPLASSSSFESMFREIESCIRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFLRVA 884 (1833)
Q Consensus 810 ~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~tlE~vfl~~~ 884 (1833)
.+........++.+.+.++.. .....++++.+.. ....+.++.+..++|||+|+++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~-----------------~~~~i~~~~~~~~~Le~~f~~~~ 301 (302)
T TIGR01188 245 GLGLLAVTVDSDRIKILVPDG-DETVPEIVEAAIR-----------------NGIRIRSISTERPSLDDVFLKLT 301 (302)
T ss_pred cccceeeeecCCeEEEEEcCc-hhHHHHHHHHHHH-----------------CCCceEEEEcCCCCHHHHHHHHh
Confidence 222211222233444444422 1123444444432 24678899999999999999874
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-47 Score=453.17 Aligned_cols=223 Identities=33% Similarity=0.533 Sum_probs=206.8
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhcc
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1543 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~~ 1543 (1833)
.++++|++|+|+ ++.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.......++
T Consensus 2 ~l~~~~l~~~~~------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~ 75 (301)
T TIGR03522 2 SIRVSSLTKLYG------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQR 75 (301)
T ss_pred EEEEEEEEEEEC------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHh
Confidence 478999999995 35699999999999999999999999999999999999999999999999998766566788
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEE
Q 000224 1544 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1623 (1833)
Q Consensus 1544 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~vl 1623 (1833)
++||+||++.+++.+|+.||+.+.+..+|.+.++..++++++++.+||.+..++++++|||||||||+||+||+++|++|
T Consensus 76 ~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 155 (301)
T TIGR03522 76 NIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVL 155 (301)
T ss_pred ceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999999999888888766666677889999999999899999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhhcC
Q 000224 1624 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 1695 (1833)
Q Consensus 1624 lLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~~~ 1695 (1833)
||||||+||||.+++.+|+.|++++ + + +|||++||++++++.+||||++|++|++++.|++++++.+.+
T Consensus 156 iLDEPt~gLD~~~~~~l~~~l~~~~-~-~-~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 224 (301)
T TIGR03522 156 ILDEPTTGLDPNQLVEIRNVIKNIG-K-D-KTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAANK 224 (301)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHhc-C-C-CEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHhcC
Confidence 9999999999999999999999984 3 4 689999999999999999999999999999999999987644
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=450.25 Aligned_cols=297 Identities=29% Similarity=0.474 Sum_probs=240.5
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcceE
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 639 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 639 (1833)
++++|++|+|+ ++.+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++......+++++|
T Consensus 3 l~~~~l~~~~~----~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYG----TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEEC----CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceE
Confidence 78999999995 34699999999999999999999999999999999999999999999999998765566788999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEEe
Q 000224 640 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 719 (1833)
Q Consensus 640 ~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 719 (1833)
||||++.+++.+||.||+.+++.++|.+.++.+++++++++.+||.+..++++++||||||||++||+||+++|++||||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLD 158 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILD 158 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999999999888888776767788999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhCCcEEEEEEecCCCh
Q 000224 720 EPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKSAPDA 799 (1833)
Q Consensus 720 EPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~~g~gy~l~~~~~~~~~ 799 (1833)
|||+||||.+++++|++|+++++++|||++||++++++.+||||++|++|++++.|++.++++.++ +..+.+.......
T Consensus 159 EPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~-~~~~~i~~~~~~~ 237 (301)
T TIGR03522 159 EPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAANK-KQVIEVEFEEQID 237 (301)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHhcC-CceEEEEecCcch
Confidence 999999999999999999999878999999999999999999999999999999999999987744 3334433222111
Q ss_pred hhHHHHHHHhCCCceEEee-eCcEEEEEecCCCcchHHHHHHHHHHhhhhccccccccccccccCCCeeEEEecCCChHH
Q 000224 800 SAAADIVYRHIPSALCVSE-VGTEITFKLPLASSSSFESMFREIESCIRKSVSKVEADATEDTDYLGIESFGISVTTLEE 878 (1833)
Q Consensus 800 ~~~~~~~~~~~p~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~tlE~ 878 (1833)
. ... +..+....... .++...+..+.. .....++.+.+.. ....+.++....++|||
T Consensus 238 ~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~sLe~ 295 (301)
T TIGR03522 238 L---QLF-ETLEEISSVKNTGGNTWKLTFETP-NDTRPEIFKLAQQ-----------------KGLKLISLQQNEKNLEQ 295 (301)
T ss_pred h---HHH-hhccccceeeecCCCeEEEEEcCc-cchHHHHHHHHHH-----------------CCCceEEEEeCCCCHHH
Confidence 1 111 11111111111 223333332221 1122333333321 24567889999999999
Q ss_pred HHHHH
Q 000224 879 VFLRV 883 (1833)
Q Consensus 879 vfl~~ 883 (1833)
+|.++
T Consensus 296 ~~~~~ 300 (301)
T TIGR03522 296 VFREI 300 (301)
T ss_pred HHHHh
Confidence 99875
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=452.17 Aligned_cols=213 Identities=42% Similarity=0.715 Sum_probs=197.3
Q ss_pred ccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccceEEEecCCCCCCCCCHH
Q 000224 1482 AKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQ 1561 (1833)
Q Consensus 1482 ~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~~~ig~~pQ~~~l~~~lTv~ 1561 (1833)
++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++...+...++++||+||++.+++.+|++
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHH
Confidence 35699999999999999999999999999999999999999999999999998765556778899999999999999999
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Q 000224 1562 EHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMW 1641 (1833)
Q Consensus 1562 e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~ 1641 (1833)
||+.+.+..++.+..+.++++.++++.++|.+..++++++|||||||||+||+||+++|++|||||||+||||.+++.++
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~ 164 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIW 164 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH
Confidence 99999888887766666677889999999998899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhhcCC
Q 000224 1642 EVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN 1696 (1833)
Q Consensus 1642 ~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~~~~ 1696 (1833)
+.|+++++ +| +|||++||++++++.+||||++|++|++++.|++++++++++.
T Consensus 165 ~~l~~~~~-~g-~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~ 217 (302)
T TIGR01188 165 DYIRALKE-EG-VTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGK 217 (302)
T ss_pred HHHHHHHh-CC-CEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHhcCC
Confidence 99999964 44 6899999999999999999999999999999999999887654
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-46 Score=449.20 Aligned_cols=225 Identities=39% Similarity=0.632 Sum_probs=204.9
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhc
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1542 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~ 1542 (1833)
.+|+++||+|.|++ +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.......+
T Consensus 3 ~~i~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 76 (303)
T TIGR01288 3 VAIDLVGVSKSYGD------KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLAR 76 (303)
T ss_pred cEEEEEeEEEEeCC------eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHh
Confidence 47999999999953 469999999999999999999999999999999999999999999999999865555567
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCE
Q 000224 1543 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPI 1622 (1833)
Q Consensus 1543 ~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~v 1622 (1833)
+++||+||++.+++.+|++||+.+++..++.+..+.++++.++++.++|.+..++++++|||||||||+||+||+++|++
T Consensus 77 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 156 (303)
T TIGR01288 77 VAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQL 156 (303)
T ss_pred hcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 88999999999999999999999877666665555556778899999999889999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhhcC
Q 000224 1623 VILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 1695 (1833)
Q Consensus 1623 llLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~~~ 1695 (1833)
|||||||+||||.+++.+++.|+++++ +| +|||++||++++++.+|||+++|++|++++.|+++++.+...
T Consensus 157 llLDEPt~gLD~~~~~~l~~~l~~~~~-~g-~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 227 (303)
T TIGR01288 157 LILDEPTTGLDPHARHLIWERLRSLLA-RG-KTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDEQI 227 (303)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHh-CC-CEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhhcC
Confidence 999999999999999999999999864 44 689999999999999999999999999999999999987643
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-47 Score=422.69 Aligned_cols=203 Identities=29% Similarity=0.472 Sum_probs=191.8
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcce
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 638 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~i 638 (1833)
.+++++++|.|+. ..||+|+||+|.+||+++|+||+|||||||+|+|+|+.+|++|+|.++|..+. .....+
T Consensus 3 ~l~i~~v~~~f~~----~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~----~p~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG----VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVT----GPGPDI 74 (248)
T ss_pred eEEEEeeEEEeCc----eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccC----CCCCCE
Confidence 5899999999953 67999999999999999999999999999999999999999999999998873 234579
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEE
Q 000224 639 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVIL 718 (1833)
Q Consensus 639 g~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliL 718 (1833)
|||||++.|+|.+||+||+.++....|.++++.++++.++|+.+||.+..++++++|||||||||+|||||+.+|++|+|
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLl 154 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLL 154 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999999999999988888888999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEeeCC
Q 000224 719 DEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANG 769 (1833)
Q Consensus 719 DEPtsgLD~~~r~~l~~~l~~~~--~g~tiil~tH~~~e~~~l~Dri~im~~G 769 (1833)
|||+++||+.+|..+.+.|.++. .++||+++|||.+||-.++|||++|.++
T Consensus 155 DEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 155 DEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 99999999999999999998873 4899999999999999999999999984
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=442.55 Aligned_cols=231 Identities=38% Similarity=0.618 Sum_probs=209.9
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcc
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 637 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ 637 (1833)
..|+++||+|.|+ ++.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.......|+.
T Consensus 3 ~~i~~~~l~~~~~----~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 78 (303)
T TIGR01288 3 VAIDLVGVSKSYG----DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVA 78 (303)
T ss_pred cEEEEEeEEEEeC----CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhc
Confidence 3699999999995 346999999999999999999999999999999999999999999999999886544556788
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEE
Q 000224 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVI 717 (1833)
Q Consensus 638 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vli 717 (1833)
+||+||++.+++.+||+||+.+++...+.+..+.+++++++++.++|.+..++++++||||||||++||+||+.+|++||
T Consensus 79 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 158 (303)
T TIGR01288 79 IGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLI 158 (303)
T ss_pred EEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999999987766666666667788899999999998999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhCCcEEEEE
Q 000224 718 LDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTL 792 (1833)
Q Consensus 718 LDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~~g~gy~l~~ 792 (1833)
|||||+|||+.+++.++++|++++ +|+|||++||++++++.+||||++|++|++++.|++.++++.+...+...+
T Consensus 159 LDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 234 (303)
T TIGR01288 159 LDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDEQIGCNVIEI 234 (303)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhhcCCCeEEEE
Confidence 999999999999999999999985 589999999999999999999999999999999999999877655444433
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-47 Score=445.01 Aligned_cols=223 Identities=30% Similarity=0.493 Sum_probs=210.0
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcce
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 638 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~i 638 (1833)
.|+++||+|.|++ ..||+|+||+|++||+++|+|||||||||||++|+|+.+|++|+|.|+|.+++.- .-.+|+|
T Consensus 3 ~i~l~~v~K~yg~----~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l-~P~~R~i 77 (338)
T COG3839 3 ELELKNVRKSFGS----FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDL-PPEKRGI 77 (338)
T ss_pred EEEEeeeEEEcCC----ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC-ChhHCCE
Confidence 5899999999953 2299999999999999999999999999999999999999999999999999752 2335789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEE
Q 000224 639 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVIL 718 (1833)
Q Consensus 639 g~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliL 718 (1833)
|+|||+..|||.|||+||+.|+.++++.+++++++++.++.+.++|++.+++++.+|||||||||+|||||+.+|++++|
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~ 157 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLL 157 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhCC
Q 000224 719 DEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGV 786 (1833)
Q Consensus 719 DEPtsgLD~~~r~~l~~~l~~~~~--g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~~g~ 786 (1833)
|||.|+||+..|..+...|+++.+ |.|+|.+|||-.||..++|||++|++|++...|+|.++.++...
T Consensus 158 DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n 227 (338)
T COG3839 158 DEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPAN 227 (338)
T ss_pred cCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccc
Confidence 999999999999999999999854 89999999999999999999999999999999999999776543
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-48 Score=404.76 Aligned_cols=223 Identities=33% Similarity=0.552 Sum_probs=204.0
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCCh--HH
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDP--KA 1540 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~--~~ 1540 (1833)
..|.++||.|+|+ ++.+|+||||+|++||++||+|||||||||+|.|++|+.+|++|+|.++|.|++..+ .+
T Consensus 3 ~~L~a~~l~K~y~------kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~R 76 (243)
T COG1137 3 STLVAENLAKSYK------KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKR 76 (243)
T ss_pred cEEEehhhhHhhC------CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHH
Confidence 3689999999996 467999999999999999999999999999999999999999999999999998754 45
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChh--hHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhc
Q 000224 1541 ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEY--RMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIG 1618 (1833)
Q Consensus 1541 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~--~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~ 1618 (1833)
+|..|||+||++.+|..+||+||+.....++..+.+ +.+.+++++|++|++.+.++++..+||||||||+.|||||+.
T Consensus 77 ArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~ 156 (243)
T COG1137 77 ARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAA 156 (243)
T ss_pred hhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhc
Confidence 677899999999999999999999988877664444 334457799999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000224 1619 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693 (1833)
Q Consensus 1619 ~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~ 1693 (1833)
+|+.++||||++|+||.+...+.++|+.++ ++| ..|++|-|+..|...+|||.+||.+|++.+.|+|+++.+.
T Consensus 157 ~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~-~rg-iGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 157 NPKFILLDEPFAGVDPIAVIDIQRIIKHLK-DRG-IGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred CCCEEEecCCccCCCchhHHHHHHHHHHHH-hCC-ceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 999999999999999999999999999996 444 6899999999999999999999999999999999998753
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=441.72 Aligned_cols=227 Identities=32% Similarity=0.500 Sum_probs=212.4
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhc
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1542 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~ 1542 (1833)
..|+++||+|.|++ ..+|+++||+|++||+++|+||||||||||||||+|+++|++|+|+++|.+++.-+. .+
T Consensus 2 ~~i~l~~v~K~yg~------~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P-~~ 74 (338)
T COG3839 2 AELELKNVRKSFGS------FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPP-EK 74 (338)
T ss_pred cEEEEeeeEEEcCC------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-hH
Confidence 36899999999963 229999999999999999999999999999999999999999999999999987332 34
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCE
Q 000224 1543 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPI 1622 (1833)
Q Consensus 1543 ~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~v 1622 (1833)
|.||+|+|+.+|||.|||+||+.|..+.++.+++++++++++..+.++|++..++++.+|||||||||++||||+++|++
T Consensus 75 R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v 154 (338)
T COG3839 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKV 154 (338)
T ss_pred CCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCE
Confidence 77999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhhcCCe
Q 000224 1623 VILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNF 1697 (1833)
Q Consensus 1623 llLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~~~~~ 1697 (1833)
++||||.|.||+..|..+...|+++.++-| .|+|++|||..|+..++|||++|++|++...|+|.++.++..+.
T Consensus 155 ~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~-~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n~ 228 (338)
T COG3839 155 FLLDEPLSNLDAKLRVLMRSEIKKLHERLG-TTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPANL 228 (338)
T ss_pred EEecCchhHhhHHHHHHHHHHHHHHHHhcC-CcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccch
Confidence 999999999999999999999999976554 78999999999999999999999999999999999998765443
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-47 Score=447.96 Aligned_cols=220 Identities=29% Similarity=0.503 Sum_probs=206.3
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcc
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 637 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ 637 (1833)
..++++||+|.|+ +..||+|+||+|++||+++|||||||||||||+||+|+..|++|+|.++|+++.. ....+|.
T Consensus 4 ~~l~i~~v~k~yg----~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~-lpp~kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFG----DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITD-VPPEKRP 78 (352)
T ss_pred ceEEEEeeeeecC----CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC-CChhhcc
Confidence 4799999999994 5679999999999999999999999999999999999999999999999999975 3345678
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEE
Q 000224 638 LGVCPQYDILFPELTVREHLEMFAVLKG-VKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVV 716 (1833)
Q Consensus 638 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~-~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vl 716 (1833)
||+|||+-.|||+|||+||++|+.+.++ .++++++++++++|+.++|++..++++++|||||||||+|||||+.+|++|
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vL 158 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVL 158 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchh
Confidence 9999999999999999999999998655 455779999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 717 ILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 717 iLDEPtsgLD~~~r~~l~~~l~~~~--~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
+||||.|+||..-|.++...|+++. .|.|.|++|||-+||..++|||+||++|+|...|+|.++-.
T Consensus 159 LLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~ 226 (352)
T COG3842 159 LLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYE 226 (352)
T ss_pred hhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhh
Confidence 9999999999999999999999984 49999999999999999999999999999999999988854
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-47 Score=401.66 Aligned_cols=220 Identities=30% Similarity=0.496 Sum_probs=203.7
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cH-HHhhc
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DM-DEIRK 636 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~-~~~r~ 636 (1833)
.+.++||.|+|+ ++.+++|+||++++|||+||+|||||||||++.|++|+.+|++|+|.++|.|++. ++ .+.|.
T Consensus 4 ~L~a~~l~K~y~----kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArl 79 (243)
T COG1137 4 TLVAENLAKSYK----KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79 (243)
T ss_pred EEEehhhhHhhC----CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhc
Confidence 588999999994 4579999999999999999999999999999999999999999999999999975 33 45678
Q ss_pred ceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHH--HHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCc
Q 000224 637 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEE--LLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSK 714 (1833)
Q Consensus 637 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~--~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~ 714 (1833)
.|||+||++..|-.|||+||+....+.+..+.+ +.+.+++++|+++++.+.++++..+||||||||+.|||||+.+|+
T Consensus 80 GigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~ 159 (243)
T COG1137 80 GIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPK 159 (243)
T ss_pred CcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCC
Confidence 899999999999999999999988877764443 455568899999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 715 VVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 715 vliLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
+++||||++|+||.+...+.++++.++ .|..|++|.|+..|...+|||.+||++|++.+.|+|+++-+
T Consensus 160 fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 160 FILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred EEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 999999999999999999999999997 48999999999999999999999999999999999988754
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-46 Score=415.30 Aligned_cols=206 Identities=29% Similarity=0.479 Sum_probs=193.1
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhc
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1542 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~ 1542 (1833)
..+++++++|.|++ ..||+|+||+|++||+++|+||+|||||||+|+|+|+.+|++|+|.++|..+.. ..
T Consensus 2 ~~l~i~~v~~~f~~------~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~----p~ 71 (248)
T COG1116 2 ALLEIEGVSKSFGG------VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTG----PG 71 (248)
T ss_pred ceEEEEeeEEEeCc------eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCC----CC
Confidence 36899999999963 679999999999999999999999999999999999999999999999998842 34
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCE
Q 000224 1543 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPI 1622 (1833)
Q Consensus 1543 ~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~v 1622 (1833)
..+|||+|++.|+|.+||+||+.+.....|.++++.++++.++|+.+||.++.++++++|||||||||+|||||+.+|+|
T Consensus 72 ~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~l 151 (248)
T COG1116 72 PDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKL 151 (248)
T ss_pred CCEEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCE
Confidence 56999999999999999999999999988888877788999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECC
Q 000224 1623 VILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGG 1679 (1833)
Q Consensus 1623 llLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G 1679 (1833)
|+||||+++||+.+|..+++.|.++.++.+ .||+++|||.+||-.++|||++|.++
T Consensus 152 LLlDEPFgALDalTR~~lq~~l~~lw~~~~-~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 152 LLLDEPFGALDALTREELQDELLRLWEETR-KTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred EEEcCCcchhhHHHHHHHHHHHHHHHHhhC-CEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 999999999999999999999999987665 69999999999999999999999984
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=443.55 Aligned_cols=223 Identities=30% Similarity=0.511 Sum_probs=208.4
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhc
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1542 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~ 1542 (1833)
..++++|++|.|+ +..||+|+||+|++||+++||||+|||||||||||+|+..|++|+|.++|+++..-+. .+
T Consensus 4 ~~l~i~~v~k~yg------~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp-~k 76 (352)
T COG3842 4 PALEIRNVSKSFG------DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPP-EK 76 (352)
T ss_pred ceEEEEeeeeecC------CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-hh
Confidence 5799999999996 4679999999999999999999999999999999999999999999999999987443 46
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHHHHcC-CChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCC
Q 000224 1543 RLIGYCPQFDALLEYLTVQEHLELYARIKG-VAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1621 (1833)
Q Consensus 1543 ~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~ 1621 (1833)
|.||+|+|+.+|||.|||+||+.|..+.++ .+++++++++.++++.++|.+++++++.+|||||||||+|||||+.+|+
T Consensus 77 R~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~ 156 (352)
T COG3842 77 RPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPK 156 (352)
T ss_pred cccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcc
Confidence 779999999999999999999999998655 4446688999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000224 1622 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693 (1833)
Q Consensus 1622 vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~ 1693 (1833)
+||||||.++||..-|.++..-|+++.++.| .|.|++|||-+|+..++|||++|++|+|.-.|+|+++..+
T Consensus 157 vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~g-iT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 157 VLLLDEPLSALDAKLREQMRKELKELQRELG-ITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred hhhhcCcccchhHHHHHHHHHHHHHHHHhcC-CeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 9999999999999999999999999987665 7999999999999999999999999999999999998764
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-42 Score=478.95 Aligned_cols=446 Identities=19% Similarity=0.223 Sum_probs=286.1
Q ss_pred HcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHh--cccccc-cChhhhHHHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Q 000224 319 MMGL-KDGIFHLSWFITYAAQFAVSSGIITACTM--DSLFKY-SDKTVVFTYFFSFGLSAITLSFFISTFFARAKTAVAV 394 (1833)
Q Consensus 319 ~mGl-~~~~~wlsw~i~~~~~~~i~~~i~~~~~~--~~~f~~-s~~~~~f~~~~l~~~s~i~~~f~iS~fF~~~~~a~~~ 394 (1833)
..|+ +.++|.+|-.+..++..++.+++..++.+ ..+-.. ..+++.+++.++..++..++..++|+++.+...|..+
T Consensus 487 ~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~ 566 (1394)
T TIGR00956 487 KYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTP 566 (1394)
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3444 67788888888877766555544443322 111111 2233334444555666777888999999999999887
Q ss_pred HHHHHHHHHh-hhhcccCCCchhHHhHHHhhhchhHHHHHHHHHHHHhhccC--------Ccccccc------cc-----
Q 000224 395 GTLSFLGAFF-PYYTVNDEAVPMVLKVIASLLSPTAFALGSVNFADYERAHV--------GLRWSNM------WR----- 454 (1833)
Q Consensus 395 ~~l~~~~~~~-~~~~~~~~~~~~~~~~~~sl~~~~a~~~~~~~~~~~e~~~~--------g~~~~~~------~~----- 454 (1833)
+.++++...+ --+++....++...+|+ ..++|+.+++.......|..... |-.+++. ..
T Consensus 567 ~~~~~~~~~lf~Gf~i~~~~mp~~~~W~-~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~ 645 (1394)
T TIGR00956 567 AAILLLALSIYTGFAIPRPSMLGWSKWI-YYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAE 645 (1394)
T ss_pred HHHHHHHHHHHcccccChhhccHHHHHH-HHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCc
Confidence 7765443222 22345555677767776 46788888876655554432211 0011111 00
Q ss_pred ----CCC---------C---chHHHHHHHHHHHHHHHHHHHHHH-hccccCCCCccccccccccccccCccccccccccc
Q 000224 455 ----ASS---------G---VNFLVCLLMMLLDTLLYGVIGLYL-DKVLPKENGVRYRWNFIFQNCFRRKKSVIKHHVSS 517 (1833)
Q Consensus 455 ----~~~---------~---~~~~~~~~~l~~~~~ly~~l~~yl-d~v~p~~~G~~~p~~f~~~~~~w~~~~~~~~~~~~ 517 (1833)
..+ + ...+.-+++++.-+++|.++++.. +.+.|...+-... -|.-...-|..+...+
T Consensus 646 ~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----- 719 (1394)
T TIGR00956 646 PGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKGAKQKGEIL-VFRRGSLKRAKKAGET----- 719 (1394)
T ss_pred CCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCceE-eeccccccchhhcccc-----
Confidence 000 0 112333334444444444443322 2222222110000 0000000010000000
Q ss_pred hhHHhhhhhhhhhhhhhccccCcchhhhhhhhccc-cccCcceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEec
Q 000224 518 AEVKINKKLSKEKECAFALDACEPVVEAISLDMKQ-QEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLG 596 (1833)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~-~~~~~~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG 596 (1833)
.+.+. ...++..........+..+....+... ....+..++++||++.|+.+++.+.+|+|+|+++++||++||+|
T Consensus 720 ~~~~~---~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G 796 (1394)
T TIGR00956 720 SASNK---NDIEAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMG 796 (1394)
T ss_pred ccccc---ccccccccCCCCccccccccccccccccccCCCceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEEC
Confidence 00000 000000000000000000000000000 00112358999999999754445679999999999999999999
Q ss_pred CCCCChHHHHHHHcCCCC---CCcceEEEcCccCCccHHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcC---CCHHH
Q 000224 597 HNGAGKSTTISMLVGLIP---PTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKG---VKEEL 670 (1833)
Q Consensus 597 ~NGaGKSTll~~l~Gl~~---p~~G~i~i~g~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~---~~~~~ 670 (1833)
|||||||||+++|+|+.+ |++|+|.++|+++.. ..|+.+|||+|++.+++.+||+||+.+.+.++. .+.++
T Consensus 797 ~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~---~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~ 873 (1394)
T TIGR00956 797 ASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS---SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSE 873 (1394)
T ss_pred CCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh---hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHH
Confidence 999999999999999998 789999999998742 467889999999999999999999999887753 44556
Q ss_pred HHHHHHHHHHHcCCCcccccccC----CCChhHHHHHHHHHHHhCCCc-EEEEeCCCCCCCHHHHHHHHHHHHHHh-CCc
Q 000224 671 LESVVAEMVDEVGLADKVNIVVR----ALSGGMKRKLSLGIALIGDSK-VVILDEPTSGMDPYSMRLTWQLIKKIK-KGR 744 (1833)
Q Consensus 671 ~~~~v~~~l~~~~L~~~~~~~~~----~LSgGqkqrl~lA~al~~~p~-vliLDEPtsgLD~~~r~~l~~~l~~~~-~g~ 744 (1833)
.+++++++++.+||.+.+|+.++ .|||||||||+||+||+.+|+ ||+|||||+|||+.+++.++++|++++ +|+
T Consensus 874 ~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~ 953 (1394)
T TIGR00956 874 KMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQ 953 (1394)
T ss_pred HHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCC
Confidence 67789999999999998999887 799999999999999999997 999999999999999999999999985 689
Q ss_pred EEEEEcCCHHH-HHhhcCEEEEeeCC-EEEeecCH
Q 000224 745 IILLTTHSMDE-AEELGDRIAIMANG-SLKCCGSS 777 (1833)
Q Consensus 745 tiil~tH~~~e-~~~l~Dri~im~~G-~l~~~G~~ 777 (1833)
|||+|||+++. +...+||+++|++| +++..|++
T Consensus 954 tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~ 988 (1394)
T TIGR00956 954 AILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDL 988 (1394)
T ss_pred EEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCc
Confidence 99999999986 45679999999997 99999986
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=466.10 Aligned_cols=438 Identities=18% Similarity=0.220 Sum_probs=278.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHh--cccccc-cChhhhHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 000224 323 KDGIFHLSWFITYAAQFAVSSGIITACTM--DSLFKY-SDKTVVFTYFFSFGLSAITLSFFISTFFARAKTAVAVGTLSF 399 (1833)
Q Consensus 323 ~~~~~wlsw~i~~~~~~~i~~~i~~~~~~--~~~f~~-s~~~~~f~~~~l~~~s~i~~~f~iS~fF~~~~~a~~~~~l~~ 399 (1833)
+.++|.++-++.-++..++.+++..++.+ ..+=+. ..++..++++++-.++..++..++++++++...|..++.++.
T Consensus 609 ~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~ 688 (1470)
T PLN03140 609 PPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVL 688 (1470)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 67899999888877766665544433221 111111 223333444445556677778889999999998888877655
Q ss_pred HHHHh-hhhcccCCCchhHHhHHHhhhchhHHHHHHHHHHHHhhccCCccccccccC------------CCCc-----hH
Q 000224 400 LGAFF-PYYTVNDEAVPMVLKVIASLLSPTAFALGSVNFADYERAHVGLRWSNMWRA------------SSGV-----NF 461 (1833)
Q Consensus 400 ~~~~~-~~~~~~~~~~~~~~~~~~sl~~~~a~~~~~~~~~~~e~~~~g~~~~~~~~~------------~~~~-----~~ 461 (1833)
+..++ --|++....++...+|+ ..++|..+++.......|. |.+|.+.... ..++ ..
T Consensus 689 l~~~lf~Gf~i~~~~ip~w~~W~-~yisp~~Ya~eal~~NEf~----~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~ 763 (1470)
T PLN03140 689 LLVFLLGGFILPKGEIPNWWEWA-YWVSPLSYGFNALAVNEMF----APRWMNKMASDNSTRLGTAVLNIFDVFTDKNWY 763 (1470)
T ss_pred HHHHHHccceechHhCchHHHHH-HHhCHHHHHHHHHHHHhcc----CccccCcccCCCCcccHHHHHHhcCcCccccch
Confidence 43332 22445556677777775 4678888887665555442 2223221000 0011 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc-cccCCCCccccccccccccccCcc-ccccccccchhH--Hhhhhhh--hhhh---h
Q 000224 462 LVCLLMMLLDTLLYGVIGLYLDK-VLPKENGVRYRWNFIFQNCFRRKK-SVIKHHVSSAEV--KINKKLS--KEKE---C 532 (1833)
Q Consensus 462 ~~~~~~l~~~~~ly~~l~~yld~-v~p~~~G~~~p~~f~~~~~~w~~~-~~~~~~~~~~~~--~~~~~~~--~~~~---~ 532 (1833)
+..+++|+.-+++|.+++.+.=. +-|..-+.... .+.+ +..+........ ..++... ..+. .
T Consensus 764 w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (1470)
T PLN03140 764 WIGVGALLGFTILFNVLFTLALTYLNPLGKKQAII---------SEETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMS 834 (1470)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccc---------cccchhhhhccccccccccccccccccccccccccc
Confidence 22233333333444443322221 11111110000 0000 000000000000 0000000 0000 0
Q ss_pred hhcc---ccCcchhhhhhhhcccc----ccCcceEEEEeeEEEecCCC---------CcccceeeeeEEEeCCeEEEEec
Q 000224 533 AFAL---DACEPVVEAISLDMKQQ----EVDGRCIQIRKLHKVYATKR---------GNCCAVNSLQLTLYENQILALLG 596 (1833)
Q Consensus 533 ~~~~---~~~~~~~e~~~~~~~~~----~~~~~~i~i~~l~k~y~~~~---------~~~~al~~vsl~i~~Gei~~llG 596 (1833)
.... +..+...+..... ... ......+..+||++..+.+. +++.+|+|+|+++++||+++|+|
T Consensus 835 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G 913 (1470)
T PLN03140 835 NPEGLSKNRDSSLEAANGVA-PKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMG 913 (1470)
T ss_pred cccccccccccccccccccc-cccccccCCCcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEEC
Confidence 0000 0000000000000 000 01123589999998875321 23579999999999999999999
Q ss_pred CCCCChHHHHHHHcCCCCC--CcceEEEcCccCCccHHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhc---CCCHHHH
Q 000224 597 HNGAGKSTTISMLVGLIPP--TTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLK---GVKEELL 671 (1833)
Q Consensus 597 ~NGaGKSTll~~l~Gl~~p--~~G~i~i~g~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~---~~~~~~~ 671 (1833)
||||||||||++|+|..++ .+|+|.++|++... ...++.+|||+|++.+++.+||+|||.+.+.++ ..+.++.
T Consensus 914 ~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~--~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~ 991 (1470)
T PLN03140 914 VSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ--ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEK 991 (1470)
T ss_pred CCCCCHHHHHHHHcCCCCCCcccceEEECCccCCh--HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHH
Confidence 9999999999999999874 78999999987642 235677999999999999999999999987654 2344556
Q ss_pred HHHHHHHHHHcCCCccccccc-----CCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCcE
Q 000224 672 ESVVAEMVDEVGLADKVNIVV-----RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRI 745 (1833)
Q Consensus 672 ~~~v~~~l~~~~L~~~~~~~~-----~~LSgGqkqrl~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~g~t 745 (1833)
+++++++++.+||.+..|+.+ +.|||||||||+||+||+.+|++|+|||||+|||+.++..++++|++++ +|+|
T Consensus 992 ~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~t 1071 (1470)
T PLN03140 992 MMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1071 (1470)
T ss_pred HHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCE
Confidence 678999999999998888886 5899999999999999999999999999999999999999999999986 5899
Q ss_pred EEEEcCCHH-HHHhhcCEEEEeeC-CEEEeecCH
Q 000224 746 ILLTTHSMD-EAEELGDRIAIMAN-GSLKCCGSS 777 (1833)
Q Consensus 746 iil~tH~~~-e~~~l~Dri~im~~-G~l~~~G~~ 777 (1833)
||+|||+++ ++..++||+++|++ |++++.|++
T Consensus 1072 VI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~ 1105 (1470)
T PLN03140 1072 VVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPL 1105 (1470)
T ss_pred EEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCc
Confidence 999999998 57789999999996 899999985
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=443.24 Aligned_cols=222 Identities=31% Similarity=0.459 Sum_probs=205.0
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-c---HHHhh
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-D---MDEIR 635 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~---~~~~r 635 (1833)
|+++||+|.|+++++.+.+|+|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.++|.++.. . ....|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999643223579999999999999999999999999999999999999999999999999853 1 23467
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcE
Q 000224 636 KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 715 (1833)
Q Consensus 636 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 715 (1833)
++|||+||++.+++.+||+||+.+.....+.++++.++++.++++.+||.+..++++++|||||||||+|||||+.+|++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~i 161 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKV 161 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 89999999999999999999999988777777778888999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 716 VILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 716 liLDEPtsgLD~~~r~~l~~~l~~~~~--g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
|||||||++|||.+++.++++|+++++ |.|||++||+|+++..+||||++|++|++++.|++.++.
T Consensus 162 LLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 162 LLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999853 899999999999999999999999999999999987764
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-46 Score=420.61 Aligned_cols=221 Identities=30% Similarity=0.470 Sum_probs=199.4
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhc
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAAR 1542 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~~ 1542 (1833)
+++++||++.|+ ++.+++|+||+|++||+++|+||||||||||+|+|+|+++|.+|+|+++|+++.+ ..+++.
T Consensus 2 ~L~~~~ls~~y~------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelA 75 (258)
T COG1120 2 MLEVENLSFGYG------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELA 75 (258)
T ss_pred eeEEEEEEEEEC------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHh
Confidence 589999999996 4679999999999999999999999999999999999999999999999999976 567788
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHHH----HcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhc
Q 000224 1543 RLIGYCPQFDALLEYLTVQEHLELYAR----IKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIG 1618 (1833)
Q Consensus 1543 ~~ig~~pQ~~~l~~~lTv~e~l~~~~~----~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~ 1618 (1833)
+++||+||.+.....+||+|-+.++.. ..+...++.++.+++.|+.+|+.+.++|.+.+||||||||+.|||||+.
T Consensus 76 k~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ 155 (258)
T COG1120 76 KKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQ 155 (258)
T ss_pred hhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhc
Confidence 899999999877778999998876432 1122233445578899999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHH
Q 000224 1619 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1691 (1833)
Q Consensus 1619 ~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~ 1691 (1833)
+|++|+|||||++||+..+.+++++++++++++| .|||+++||++.+.++|||+++|++|++++.|+|+++.
T Consensus 156 ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~-~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 156 ETPILLLDEPTSHLDIAHQIEVLELLRDLNREKG-LTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred CCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 9999999999999999999999999999986655 68999999999999999999999999999999987654
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-46 Score=417.59 Aligned_cols=225 Identities=26% Similarity=0.444 Sum_probs=205.3
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCc---cCCccHHHhh
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGK---NITADMDEIR 635 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~---~i~~~~~~~r 635 (1833)
.|++++++|.|++ ..|++|+|++|+.||.+||+|||||||||||++|+|+..|++|+|.++|. |.+. .....
T Consensus 2 ~i~i~~~~~~~~~----~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~-~~~~~ 76 (345)
T COG1118 2 SIRINNVKKRFGA----FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSN-LAVRD 76 (345)
T ss_pred ceeehhhhhhccc----ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhc-cchhh
Confidence 4789999999954 56999999999999999999999999999999999999999999999999 5543 23344
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCC
Q 000224 636 KGLGVCPQYDILFPELTVREHLEMFAVLKG--VKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDS 713 (1833)
Q Consensus 636 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~--~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p 713 (1833)
++||+|+||..||+.|||.+||+|+.+.+. .++.+++.++.++|+.++|+...++++.+||||||||++|||||+.+|
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP 156 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEP 156 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCC
Confidence 789999999999999999999999987663 345678999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhCCcE
Q 000224 714 KVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGY 788 (1833)
Q Consensus 714 ~vliLDEPtsgLD~~~r~~l~~~l~~~~~--g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~~g~gy 788 (1833)
++|+||||+++||+.-|+.+...|+++.+ |.|+|++|||.+|+.++||||++|++|+|...|++.+.-...+.-+
T Consensus 157 ~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P~s~f 233 (345)
T COG1118 157 KVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRF 233 (345)
T ss_pred CeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCCCccc
Confidence 99999999999999999999999999853 8999999999999999999999999999999999998876655443
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-45 Score=441.75 Aligned_cols=226 Identities=27% Similarity=0.466 Sum_probs=205.1
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-h---H
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-P---K 1539 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~-~---~ 1539 (1833)
||+++||+|+|+++. +.+.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++... . .
T Consensus 1 mI~~~~lsk~y~~~~--~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~ 78 (343)
T TIGR02314 1 MIKLSNITKVFHQGT--KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELT 78 (343)
T ss_pred CEEEEEEEEEECCCC--cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 488999999996321 134699999999999999999999999999999999999999999999999998652 2 2
Q ss_pred HhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcC
Q 000224 1540 AARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1619 (1833)
Q Consensus 1540 ~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~ 1619 (1833)
..|++|||+||+..+++.+||+||+.+.....+.++.+.++++.++++.+||.+..++++.+|||||||||+|||||+.+
T Consensus 79 ~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~ 158 (343)
T TIGR02314 79 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASN 158 (343)
T ss_pred HHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhC
Confidence 35778999999999999999999999877777777767778889999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1620 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1620 p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
|++|||||||+||||.+++.++++|++++++.| .|||++||+|+++.++||||++|++|++++.|+++++..
T Consensus 159 P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g-~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 159 PKVLLCDEATSALDPATTQSILELLKEINRRLG-LTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 999999999999999999999999999975445 689999999999999999999999999999999988864
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=418.47 Aligned_cols=222 Identities=29% Similarity=0.472 Sum_probs=208.6
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCC--ccHHHhhc
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT--ADMDEIRK 636 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~--~~~~~~r~ 636 (1833)
.++++++++.|+++ ..+++|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+...+|+
T Consensus 3 ~i~~~~l~~~y~~~---~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~ 79 (235)
T COG1122 3 MIEAENLSFRYPGR---KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQ 79 (235)
T ss_pred eEEEEEEEEEcCCC---ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhc
Confidence 58899999999754 57999999999999999999999999999999999999999999999999886 56778999
Q ss_pred ceEEEccCC-CCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcE
Q 000224 637 GLGVCPQYD-ILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 715 (1833)
Q Consensus 637 ~ig~~~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 715 (1833)
++|+|+|+| ..+..-||.|.++|+....|++.+++++++.++++.+|+.+.+++++.+|||||||||+||.+|+.+|++
T Consensus 80 ~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~i 159 (235)
T COG1122 80 KVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEI 159 (235)
T ss_pred ceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCE
Confidence 999999998 3455669999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q 000224 716 VILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 783 (1833)
Q Consensus 716 liLDEPtsgLD~~~r~~l~~~l~~~~~--g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~ 783 (1833)
||||||||||||.+++++.++++++++ |+|||++|||++++..+|||+++|++|+++.+|+|.++.+.
T Consensus 160 liLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 160 LLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 999999999999999999999999963 68999999999999999999999999999999998776543
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=399.70 Aligned_cols=224 Identities=27% Similarity=0.449 Sum_probs=205.2
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC----h
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD----P 1538 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~----~ 1538 (1833)
.+|+++||+|.|++ ++.+|+||||+|++||+++|+||+|||||||+|+|.|+..|++|+|.++|.++... .
T Consensus 2 ~~i~~~nl~k~yp~-----~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~l 76 (258)
T COG3638 2 MMIEVKNLSKTYPG-----GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKEL 76 (258)
T ss_pred ceEEEeeeeeecCC-----CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHH
Confidence 47999999999974 46799999999999999999999999999999999999999999999999988652 3
Q ss_pred HHhccceEEEecCCCCCCCCCHHHHHHHHH--------HHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHH
Q 000224 1539 KAARRLIGYCPQFDALLEYLTVQEHLELYA--------RIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKL 1610 (1833)
Q Consensus 1539 ~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~--------~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl 1610 (1833)
++.|++|||++|.+.|.+.+||.+|+..+. .+-|+..++.+..+.+.|+++|+.+++.+++++|||||||||
T Consensus 77 r~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRV 156 (258)
T COG3638 77 RKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRV 156 (258)
T ss_pred HHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHH
Confidence 457889999999999999999999987642 234666666677888999999999999999999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000224 1611 SVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690 (1833)
Q Consensus 1611 ~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l 1690 (1833)
+|||||+.+|+++|-|||+++|||.+.+.+++.|++++++.| .|||++.|+++.+.++||||+-|++|+++.+|+++++
T Consensus 157 aIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g-~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el 235 (258)
T COG3638 157 AIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDG-ITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASEL 235 (258)
T ss_pred HHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcC-CEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhh
Confidence 999999999999999999999999999999999999987776 6899999999999999999999999999999999886
Q ss_pred Hh
Q 000224 1691 KT 1692 (1833)
Q Consensus 1691 ~~ 1692 (1833)
.+
T Consensus 236 ~~ 237 (258)
T COG3638 236 TD 237 (258)
T ss_pred hH
Confidence 54
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-46 Score=415.10 Aligned_cols=231 Identities=31% Similarity=0.478 Sum_probs=212.3
Q ss_pred ceEEEEeeEEEecCCC--------------------CcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCc
Q 000224 558 RCIQIRKLHKVYATKR--------------------GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTT 617 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~--------------------~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~ 617 (1833)
..|+++||+|.|+.+. +-+..++|+||+|++|||++|.|-+|||||||+++|.++++||+
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~ 82 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR 82 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC
Confidence 3589999999997521 23467899999999999999999999999999999999999999
Q ss_pred ceEEEcCccCCc----cHHHh-hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCccccccc
Q 000224 618 GDALVFGKNITA----DMDEI-RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVV 692 (1833)
Q Consensus 618 G~i~i~g~~i~~----~~~~~-r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~ 692 (1833)
|+|.++|.|+.. ...+. |+++++|||+..|+|..||.||..|+.+++|+++++.++++.+.|+.+||....++++
T Consensus 83 G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp 162 (386)
T COG4175 83 GEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP 162 (386)
T ss_pred ceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc
Confidence 999999999853 23343 4779999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEeeCCE
Q 000224 693 RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGS 770 (1833)
Q Consensus 693 ~~LSgGqkqrl~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~--g~tiil~tH~~~e~~~l~Dri~im~~G~ 770 (1833)
++|||||||||.|||||+.+|+||++|||+|+|||.-|.++.+.|.++.+ .+|||++|||+|||.+++|||++|++|+
T Consensus 163 ~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ 242 (386)
T COG4175 163 NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGE 242 (386)
T ss_pred ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCe
Confidence 99999999999999999999999999999999999999999999999853 8999999999999999999999999999
Q ss_pred EEeecCHHHHHhhhCCcE
Q 000224 771 LKCCGSSLFLKHQYGVGY 788 (1833)
Q Consensus 771 l~~~G~~~~Lk~~~g~gy 788 (1833)
++.+|+|+++-......|
T Consensus 243 ivQ~Gtp~eIl~~PAndY 260 (386)
T COG4175 243 IVQVGTPEEILLNPANDY 260 (386)
T ss_pred EEEeCCHHHHHcCccHHH
Confidence 999999999876544433
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=412.86 Aligned_cols=226 Identities=26% Similarity=0.445 Sum_probs=204.7
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCe---eCCCChHH
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGK---DIRSDPKA 1540 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~---~i~~~~~~ 1540 (1833)
+|++++++|.|+ ...|++|||++|+.||.+||+||||||||||+|+|+|++.|++|+|.++|+ |.+. ...
T Consensus 2 ~i~i~~~~~~~~------~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~-~~~ 74 (345)
T COG1118 2 SIRINNVKKRFG------AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSN-LAV 74 (345)
T ss_pred ceeehhhhhhcc------cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhc-cch
Confidence 478999999995 467999999999999999999999999999999999999999999999999 6544 222
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHHHcCC--ChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhc
Q 000224 1541 ARRLIGYCPQFDALLEYLTVQEHLELYARIKGV--AEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIG 1618 (1833)
Q Consensus 1541 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~--~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~ 1618 (1833)
..++||+++|+.+||+.|||.+|+.|..+.+.. ++.+++.++.++|+.+.|+..+++++.+||||||||+++||||+-
T Consensus 75 ~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~ 154 (345)
T COG1118 75 RDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAV 154 (345)
T ss_pred hhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhc
Confidence 346799999999999999999999998876532 345678889999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhhcCCe
Q 000224 1619 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNF 1697 (1833)
Q Consensus 1619 ~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~~~~~ 1697 (1833)
+|++|+||||+++||..-|+++...|+++.++-| .|++++|||++|+.++||||++|++|+|...|+++++...-...
T Consensus 155 eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~-~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P~s~ 232 (345)
T COG1118 155 EPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLG-VTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASR 232 (345)
T ss_pred CCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhC-ceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCCCcc
Confidence 9999999999999999999999999999976655 68999999999999999999999999999999999997765443
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-45 Score=415.16 Aligned_cols=228 Identities=27% Similarity=0.434 Sum_probs=205.1
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHHhhcc
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 637 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~ 637 (1833)
.++++||++.|+ ++.+++|+||++++||+++|+||||||||||+|+|+|+++|.+|+|.++|+++.. ...++.+.
T Consensus 2 ~L~~~~ls~~y~----~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ 77 (258)
T COG1120 2 MLEVENLSFGYG----GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKK 77 (258)
T ss_pred eeEEEEEEEEEC----CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhh
Confidence 488999999995 4579999999999999999999999999999999999999999999999999964 66778889
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCC
Q 000224 638 LGVCPQYDILFPELTVREHLEMFAVL----KGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDS 713 (1833)
Q Consensus 638 ig~~~Q~~~l~~~lTv~e~l~~~~~~----~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p 713 (1833)
+||+||.+.....+||+|-+.++..- .+...++.++.++++|+.+|+.+..++.+.+||||||||+.|||||+++|
T Consensus 78 ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~ 157 (258)
T COG1120 78 LAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQET 157 (258)
T ss_pred EEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCC
Confidence 99999999888889999999876432 12224445568999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHH------HHHhhhC
Q 000224 714 KVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSL------FLKHQYG 785 (1833)
Q Consensus 714 ~vliLDEPtsgLD~~~r~~l~~~l~~~~--~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~------~Lk~~~g 785 (1833)
++|+|||||++||...+-+++++++++. +|+|||+++||++.|.++||++++|++|++.+.|+|. .|++-||
T Consensus 158 ~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~e~l~~Vyg 237 (258)
T COG1120 158 PILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENLREVYG 237 (258)
T ss_pred CEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCHHHHHHHhC
Confidence 9999999999999999999999999996 4899999999999999999999999999999999975 4667777
Q ss_pred CcEEE
Q 000224 786 VGYTL 790 (1833)
Q Consensus 786 ~gy~l 790 (1833)
.....
T Consensus 238 v~~~~ 242 (258)
T COG1120 238 VDADV 242 (258)
T ss_pred CceEE
Confidence 66543
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=392.32 Aligned_cols=219 Identities=30% Similarity=0.467 Sum_probs=205.0
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCc-----ceEEEcCccCCc---
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTT-----GDALVFGKNITA--- 629 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~-----G~i~i~g~~i~~--- 629 (1833)
..++++||++.|+ .+.||+|||++|++++++||+||+||||||+|+++..+....+ |+|.++|+|+..
T Consensus 6 ~~~~~~~l~~yYg----~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~ 81 (253)
T COG1117 6 PAIEVRDLNLYYG----DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKV 81 (253)
T ss_pred ceeEecceeEEEC----chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCC
Confidence 5799999999994 5679999999999999999999999999999999999988764 999999999964
Q ss_pred cHHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHHH
Q 000224 630 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLSL 705 (1833)
Q Consensus 630 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~----~~~~~~~~~LSgGqkqrl~l 705 (1833)
+..++|++||+|+|.|.-|| +|++||+.++.++.|...+++++.+++.|+...|- +.+++.+..|||||||||||
T Consensus 82 d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcI 160 (253)
T COG1117 82 DVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCI 160 (253)
T ss_pred CHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHH
Confidence 57789999999999999999 89999999999999988888999999999999875 45678888999999999999
Q ss_pred HHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 706 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 706 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
||||+-+|+|||||||||+|||.+...+.++|.++++.-|||++||+|..|.+++|+.+.+..|++++.|+...+-
T Consensus 161 ARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 161 ARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986653
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-45 Score=412.66 Aligned_cols=218 Identities=30% Similarity=0.453 Sum_probs=190.5
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhc
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1542 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~ 1542 (1833)
.+|+++|+++.|++ . +||+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.+.|+++..... +
T Consensus 3 ~~i~v~nl~v~y~~-----~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~--~ 74 (254)
T COG1121 3 PMIEVENLTVSYGN-----R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK--R 74 (254)
T ss_pred cEEEEeeeEEEECC-----E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc--C
Confidence 47999999999963 2 59999999999999999999999999999999999999999999999998754322 4
Q ss_pred cceEEEecCC---CCCCCCCHHHHHHHHHHHc----CCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHH
Q 000224 1543 RLIGYCPQFD---ALLEYLTVQEHLELYARIK----GVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIA 1615 (1833)
Q Consensus 1543 ~~ig~~pQ~~---~l~~~lTv~e~l~~~~~~~----g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~a 1615 (1833)
.+||||||.. .-|| +||+|-+.+....+ +...++.++.++++|+++|+.+.+++++++|||||+||+.||||
T Consensus 75 ~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARA 153 (254)
T COG1121 75 LRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARA 153 (254)
T ss_pred CeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHH
Confidence 6799999953 3344 79999988753211 12233346889999999999999999999999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1616 MIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1616 l~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
|+.+|++|+|||||+|+|+.++..+.++|++++++ | +||+++|||++.+.++||||+.++ +++.|.|++++..+
T Consensus 154 L~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g-~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~~ 227 (254)
T COG1121 154 LAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-G-KTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLT 227 (254)
T ss_pred hccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-C-CEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhccC
Confidence 99999999999999999999999999999999754 5 699999999999999999999995 68999999987643
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=385.27 Aligned_cols=214 Identities=27% Similarity=0.442 Sum_probs=203.5
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc----cHHHh
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA----DMDEI 634 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~----~~~~~ 634 (1833)
.|+++||+|.|+.. ..||+|+||+|++||++.|+||+||||||++|+|.|..+||+|+|.++|+|+.. +..-.
T Consensus 1 mI~f~~V~k~Y~~g---~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~L 77 (223)
T COG2884 1 MIRFENVSKAYPGG---REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77 (223)
T ss_pred CeeehhhhhhcCCC---chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchh
Confidence 37899999999753 579999999999999999999999999999999999999999999999999853 45568
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCc
Q 000224 635 RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSK 714 (1833)
Q Consensus 635 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~ 714 (1833)
|++||+|+|+..|.++.||+||++|..+..|.+++++++++.++|+.+||.++.+..+.+||||||||++||||++.+|+
T Consensus 78 RR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~ 157 (223)
T COG2884 78 RRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPA 157 (223)
T ss_pred hheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeec
Q 000224 715 VVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 775 (1833)
Q Consensus 715 vliLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G 775 (1833)
+||-||||.+|||....++++++.++. .|.|||++|||.+.++.+--|++.+++|+++...
T Consensus 158 vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 158 VLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred eEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 999999999999999999999999996 5999999999999999999999999999998543
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=403.45 Aligned_cols=221 Identities=30% Similarity=0.484 Sum_probs=203.0
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc--cHHHhh
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA--DMDEIR 635 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~--~~~~~r 635 (1833)
..+++++|+|+| |...||+|+||++++||+++|+|||||||||++|+|+|.++|++|+|.++|++++. .....|
T Consensus 3 ~lL~v~~l~k~F----GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar 78 (250)
T COG0411 3 PLLEVRGLSKRF----GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIAR 78 (250)
T ss_pred ceeeeccceeec----CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHh
Confidence 357899999999 55789999999999999999999999999999999999999999999999999974 334567
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcC------------CCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHH
Q 000224 636 KGLGVCPQYDILFPELTVREHLEMFAVLKG------------VKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKL 703 (1833)
Q Consensus 636 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~------------~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl 703 (1833)
..|+--||...+|++|||.||+......+. ...++..+++.++|+.+||.+..++++++||+||||||
T Consensus 79 ~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~L 158 (250)
T COG0411 79 LGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRL 158 (250)
T ss_pred ccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHH
Confidence 889999999999999999999988654221 13467788999999999999999999999999999999
Q ss_pred HHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 704 SLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 704 ~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~--g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
.|||||+.+|++|+||||.+||.|...+++.++|+++++ |.||++|.|||+.+..+||||+||+.|+++++|+|++..
T Consensus 159 EIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~ 238 (250)
T COG0411 159 EIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVR 238 (250)
T ss_pred HHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHh
Confidence 999999999999999999999999999999999999974 699999999999999999999999999999999998876
Q ss_pred h
Q 000224 782 H 782 (1833)
Q Consensus 782 ~ 782 (1833)
+
T Consensus 239 ~ 239 (250)
T COG0411 239 N 239 (250)
T ss_pred c
Confidence 5
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-45 Score=400.04 Aligned_cols=226 Identities=27% Similarity=0.469 Sum_probs=203.0
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC--ChHH
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS--DPKA 1540 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~--~~~~ 1540 (1833)
.+|+++||++.|+++. ....||++|||+|.+||++||+|++|||||||.++|+|+.+|++|+|.++|.++.. ..+.
T Consensus 2 ~~l~v~nl~~~y~~~~--~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~ 79 (252)
T COG1124 2 TLLSVRNLSIVYGGGK--FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKA 79 (252)
T ss_pred ceEEEeceEEEecCCc--chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchh
Confidence 4799999999997543 12369999999999999999999999999999999999999999999999987643 2235
Q ss_pred hccceEEEecCC--CCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHHHHHHHHh
Q 000224 1541 ARRLIGYCPQFD--ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIAMI 1617 (1833)
Q Consensus 1541 ~~~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~kqrl~lA~al~ 1617 (1833)
.++.|.+|+||+ +|.|..||++.|.-.....|.++. ++++.++++.+||. ..+++++.+|||||+||++|||||+
T Consensus 80 ~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~--~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~ 157 (252)
T COG1124 80 FYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKS--QQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALI 157 (252)
T ss_pred hccceeEEecCCccccCcchhHHHHHhhhhccCCccHH--HHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhc
Confidence 678899999996 688999999999887777777654 34589999999996 5789999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000224 1618 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693 (1833)
Q Consensus 1618 ~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~ 1693 (1833)
-+|++||||||||+||+..+.++|+++.+++++. +.|.|++|||+..++.+||||+||++|++++.++.+++++.
T Consensus 158 ~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~-~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 158 PEPKLLILDEPTSALDVSVQAQILNLLLELKKER-GLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred cCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhc-CceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 9999999999999999999999999999998665 47999999999999999999999999999999999998765
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-45 Score=396.64 Aligned_cols=221 Identities=29% Similarity=0.490 Sum_probs=204.1
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc----cHHH
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA----DMDE 633 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~----~~~~ 633 (1833)
..|+++||+|.|++ ++.||+||||+|++||+++|+|++||||||||++|.|+.+|++|+|.++|.++.. ...+
T Consensus 2 ~~i~~~nl~k~yp~---~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~ 78 (258)
T COG3638 2 MMIEVKNLSKTYPG---GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRK 78 (258)
T ss_pred ceEEEeeeeeecCC---CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHH
Confidence 36999999999973 4579999999999999999999999999999999999999999999999998853 4677
Q ss_pred hhcceEEEccCCCCCCCCCHHHHHHHHH--------HhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHH
Q 000224 634 IRKGLGVCPQYDILFPELTVREHLEMFA--------VLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSL 705 (1833)
Q Consensus 634 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~--------~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~l 705 (1833)
.|++|||++|++.|.+.+||.+|+..+. .+-|+..++.+.++-++|+++|+.++..+++++|||||||||+|
T Consensus 79 ~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaI 158 (258)
T COG3638 79 LRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAI 158 (258)
T ss_pred HHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHH
Confidence 8999999999999999999999997643 33466666678889999999999999999999999999999999
Q ss_pred HHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 706 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 706 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~--~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
||||+.+|++++-|||+|+|||.+.+.+++.|+++. .|.|+|+.-|++|.|.++||||+-|++|+++..|++.+|.
T Consensus 159 ARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~ 236 (258)
T COG3638 159 ARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELT 236 (258)
T ss_pred HHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhh
Confidence 999999999999999999999999999999999984 5999999999999999999999999999999999987664
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-45 Score=403.64 Aligned_cols=211 Identities=28% Similarity=0.555 Sum_probs=193.6
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc----cHHHh-
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA----DMDEI- 634 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~----~~~~~- 634 (1833)
++++||+|.|........||+++||+|++||+++|+||+||||||||++|.|+.+||+|+|.++|.++.. .....
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 6789999999865545789999999999999999999999999999999999999999999999998863 23334
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccc-cccCCCChhHHHHHHHHHHHhCCC
Q 000224 635 RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVN-IVVRALSGGMKRKLSLGIALIGDS 713 (1833)
Q Consensus 635 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-~~~~~LSgGqkqrl~lA~al~~~p 713 (1833)
|++|||++|+..|.|.+||.||+.+...+.+.+....+++++++++.+||.+..+ +++.+|||||||||+|||||+.+|
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P 161 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNP 161 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCC
Confidence 4779999999999999999999999998888876667888999999999997766 889999999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEeeCCEE
Q 000224 714 KVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSL 771 (1833)
Q Consensus 714 ~vliLDEPtsgLD~~~r~~l~~~l~~~~--~g~tiil~tH~~~e~~~l~Dri~im~~G~l 771 (1833)
++++.||||.+||..+.+.++++++++. .|+|||++|||.+.|. .|||++.|.+|++
T Consensus 162 ~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~ 220 (226)
T COG1136 162 KIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKI 220 (226)
T ss_pred CeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCee
Confidence 9999999999999999999999999994 4899999999999997 6999999999994
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-45 Score=400.25 Aligned_cols=223 Identities=30% Similarity=0.451 Sum_probs=202.9
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc--cHHHhhc
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA--DMDEIRK 636 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~--~~~~~r~ 636 (1833)
.++++||++.|+.+.....||+||||+|.+||++||+|++|||||||.++|+|+.+|++|+|.++|..... .....++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 58999999999865544579999999999999999999999999999999999999999999999987643 2335678
Q ss_pred ceEEEccCC--CCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCChhHHHHHHHHHHHhCCC
Q 000224 637 GLGVCPQYD--ILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLAD-KVNIVVRALSGGMKRKLSLGIALIGDS 713 (1833)
Q Consensus 637 ~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~LSgGqkqrl~lA~al~~~p 713 (1833)
.|.+||||| .|.|..||.+.|.-.....|.++. ++++.++|+.+||.+ .+++++++|||||+||+||||||+.+|
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~--~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~P 160 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKS--QQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEP 160 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHH--HHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCC
Confidence 899999998 589999999999888777777654 455999999999985 579999999999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q 000224 714 KVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 783 (1833)
Q Consensus 714 ~vliLDEPtsgLD~~~r~~l~~~l~~~~~--g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~ 783 (1833)
++||||||||+||+....++|++|.++++ +-|.|++|||+..++.+||||+||++|++++.++..+++..
T Consensus 161 klLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 161 KLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred CEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 99999999999999999999999999975 56999999999999999999999999999999999888765
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=436.47 Aligned_cols=224 Identities=29% Similarity=0.449 Sum_probs=206.5
Q ss_pred cceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHh
Q 000224 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAA 1541 (1833)
Q Consensus 1462 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 1541 (1833)
.++|+++|++|.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..
T Consensus 4 ~~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~-~~ 76 (351)
T PRK11432 4 KNFVVLKNITKRFGS------NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRS-IQ 76 (351)
T ss_pred CcEEEEEeEEEEECC------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC-HH
Confidence 357999999999953 45899999999999999999999999999999999999999999999999986533 23
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCC
Q 000224 1542 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1621 (1833)
Q Consensus 1542 ~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~ 1621 (1833)
+++||||||++.+|+.+||+||+.+..+.++.++.+.+++++++++.++|.+..++++.+|||||||||+|||||+.+|+
T Consensus 77 ~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~ 156 (351)
T PRK11432 77 QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPK 156 (351)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 57899999999999999999999998877777777777889999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000224 1622 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693 (1833)
Q Consensus 1622 vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~ 1693 (1833)
+|||||||+|||+.+|+.+++.|+++.++.| +|+|++|||++|+..+||||++|++|+++..|+++++.++
T Consensus 157 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 157 VLLFDEPLSNLDANLRRSMREKIRELQQQFN-ITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999965444 6899999999999999999999999999999999998654
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-45 Score=401.94 Aligned_cols=224 Identities=31% Similarity=0.490 Sum_probs=203.0
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCCh--HH
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDP--KA 1540 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~--~~ 1540 (1833)
+++++++|+|+|| ...||+||||+|++||++||+|||||||||++|+|+|.++||+|+|.++|+++...+ ..
T Consensus 3 ~lL~v~~l~k~FG------Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~i 76 (250)
T COG0411 3 PLLEVRGLSKRFG------GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76 (250)
T ss_pred ceeeeccceeecC------CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHH
Confidence 4789999999996 467999999999999999999999999999999999999999999999999997633 33
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHHHc-------CC-----ChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHH
Q 000224 1541 ARRLIGYCPQFDALLEYLTVQEHLELYARIK-------GV-----AEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKR 1608 (1833)
Q Consensus 1541 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~-------g~-----~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kq 1608 (1833)
.|..|+--+|...+|++|||.||+......+ +. ..++..+++.++|+.+||.+.+++++++||+||||
T Consensus 77 ar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR 156 (250)
T COG0411 77 ARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQR 156 (250)
T ss_pred HhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhH
Confidence 5677889999999999999999998764422 11 23556778889999999999999999999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChh
Q 000224 1609 KLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1688 (1833)
Q Consensus 1609 rl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~ 1688 (1833)
||.|||||+.+|++|+||||.+||.|....++.+.|+++++ +++.||+++-|||+.+..+||||++|+.|+++++|+|+
T Consensus 157 ~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~-~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~ 235 (250)
T COG0411 157 RLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRD-RGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPE 235 (250)
T ss_pred HHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHH
Confidence 99999999999999999999999999999999999999974 34589999999999999999999999999999999999
Q ss_pred HHHhh
Q 000224 1689 HLKTR 1693 (1833)
Q Consensus 1689 ~l~~~ 1693 (1833)
++.+.
T Consensus 236 eV~~d 240 (250)
T COG0411 236 EVRNN 240 (250)
T ss_pred HHhcC
Confidence 98763
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=437.18 Aligned_cols=223 Identities=30% Similarity=0.467 Sum_probs=205.7
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhc
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1542 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~ 1542 (1833)
.+|+++||+|+|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .+
T Consensus 3 ~~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~-~~ 75 (353)
T TIGR03265 3 PYLSIDNIRKRFGA------FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPP-QK 75 (353)
T ss_pred cEEEEEEEEEEeCC------eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH-HH
Confidence 36999999999963 458999999999999999999999999999999999999999999999999865333 35
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCE
Q 000224 1543 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPI 1622 (1833)
Q Consensus 1543 ~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~v 1622 (1833)
+.||||||+..+|+.+||+||+.+..+.++.+..+.+++++++++.++|.+..++++.+|||||||||+|||||+.+|++
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~l 155 (353)
T TIGR03265 76 RDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGL 155 (353)
T ss_pred CCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 78999999999999999999999987777777777778899999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000224 1623 VILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693 (1833)
Q Consensus 1623 llLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~ 1693 (1833)
|||||||+|||+.+|+.+++.|+++.++.| .|+|++|||++|+..+||||++|++|+++..|+++++.++
T Consensus 156 lLLDEP~s~LD~~~r~~l~~~L~~l~~~~~-~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~ 225 (353)
T TIGR03265 156 LLLDEPLSALDARVREHLRTEIRQLQRRLG-VTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225 (353)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999865444 6899999999999999999999999999999999998764
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=400.82 Aligned_cols=214 Identities=30% Similarity=0.483 Sum_probs=191.8
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCCh----H
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDP----K 1539 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~----~ 1539 (1833)
+++++||+|.|+.+.. ...||+++||+|++||+++|+||+|||||||+++|.|+.+||+|+|.++|.++.... .
T Consensus 1 ~i~~~~v~k~y~~~~~--~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~ 78 (226)
T COG1136 1 MIELKNVSKIYGLGGE--KVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELA 78 (226)
T ss_pred CcEEeeeEEEeccCCc--ceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHH
Confidence 3679999999975432 257999999999999999999999999999999999999999999999999986522 2
Q ss_pred H-hccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccC-CCCCCCChhHHHHHHHHHHHh
Q 000224 1540 A-ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAK-KPSFTLSGGNKRKLSVAIAMI 1617 (1833)
Q Consensus 1540 ~-~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LSgG~kqrl~lA~al~ 1617 (1833)
. .+++|||++|+..|.+.+||+||+.+...+.+.+....++.+.++++.+||.+..+ +++.+|||||||||+|||||+
T Consensus 79 ~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~ 158 (226)
T COG1136 79 KLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALI 158 (226)
T ss_pred HHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHh
Confidence 2 35679999999999999999999999888888876556777888999999997666 889999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEE
Q 000224 1618 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681 (1833)
Q Consensus 1618 ~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i 1681 (1833)
.+|++|+.||||.+||..+.+.+++++++++++.| +|||++|||.+.+. .|||++.|.+|++
T Consensus 159 ~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g-~tii~VTHd~~lA~-~~dr~i~l~dG~~ 220 (226)
T COG1136 159 NNPKIILADEPTGNLDSKTAKEVLELLRELNKERG-KTIIMVTHDPELAK-YADRVIELKDGKI 220 (226)
T ss_pred cCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHH-hCCEEEEEeCCee
Confidence 99999999999999999999999999999986655 68999999987766 7999999999994
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-45 Score=382.33 Aligned_cols=216 Identities=31% Similarity=0.467 Sum_probs=203.3
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC----ChH
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS----DPK 1539 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~----~~~ 1539 (1833)
||+++|++|.|++ .+.||+||||+|++||++-|+||+||||||++|+|.+.++||+|+|.++|+|+.. +..
T Consensus 1 mI~f~~V~k~Y~~-----g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP 75 (223)
T COG2884 1 MIRFENVSKAYPG-----GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIP 75 (223)
T ss_pred CeeehhhhhhcCC-----CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccc
Confidence 5889999999985 3679999999999999999999999999999999999999999999999999865 223
Q ss_pred HhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcC
Q 000224 1540 AARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1619 (1833)
Q Consensus 1540 ~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~ 1619 (1833)
-+|++||+|+||.-|.++.||.||+++..++.|.+++++++++.++|+.+||.+.++..+.+||||||||++||||++++
T Consensus 76 ~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~ 155 (223)
T COG2884 76 FLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQ 155 (223)
T ss_pred hhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecC
Q 000224 1620 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS 1686 (1833)
Q Consensus 1620 p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~ 1686 (1833)
|++||-||||-+|||....++++++.+++ +.| +|||+.|||.+.+..+-.|++.+.+|+++....
T Consensus 156 P~vLlADEPTGNLDp~~s~~im~lfeein-r~G-tTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 156 PAVLLADEPTGNLDPDLSWEIMRLFEEIN-RLG-TTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred CCeEeecCCCCCCChHHHHHHHHHHHHHh-hcC-cEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 99999999999999999999999999996 444 899999999999999999999999999987653
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-45 Score=428.36 Aligned_cols=203 Identities=22% Similarity=0.305 Sum_probs=170.4
Q ss_pred cceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHh
Q 000224 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAA 1541 (1833)
Q Consensus 1462 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 1541 (1833)
.+.+++.++++.|..+ ....+.+++++++.-+..+++|+||+||||++|++.|...|+.|.+.+.+
T Consensus 360 ~p~l~i~~V~f~y~p~----~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~---------- 425 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPS----EYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP---------- 425 (582)
T ss_pred CCeeEEEeeeccCCCc----chhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc----------
Confidence 4679999999999643 22689999999999999999999999999999999999999999987643
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHHHHHHHHhcCC
Q 000224 1542 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIAMIGDP 1620 (1833)
Q Consensus 1542 ~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~kqrl~lA~al~~~p 1620 (1833)
|++|+|..|+..=+-++.|.+--.+-....|.++ +++++.+..+||. +.+.+++.+||||||-||++|.+...+|
T Consensus 426 r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~----ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~P 501 (582)
T KOG0062|consen 426 RLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTE----EEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNP 501 (582)
T ss_pred cceecchhHhhhhHHHHHhHHHHHHHHhCCCCCH----HHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCC
Confidence 5679999998543334555443333334456644 4566779999996 5677889999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEE-ecCh
Q 000224 1621 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRC-IGSP 1687 (1833)
Q Consensus 1621 ~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~-~g~~ 1687 (1833)
.+|+|||||++||..+...+-+.|+.+ +| .||+||||.+++..+|+.+++.++|++.- .|..
T Consensus 502 hlLVLDEPTNhLD~dsl~AL~~Al~~F---~G--GVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~ 564 (582)
T KOG0062|consen 502 HLLVLDEPTNHLDRDSLGALAKALKNF---NG--GVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGI 564 (582)
T ss_pred cEEEecCCCccccHHHHHHHHHHHHhc---CC--cEEEEECcHHHHhhcCceeEEEcCCcEEeeeccH
Confidence 999999999999999999999999987 23 49999999999999999999999999975 3444
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=411.09 Aligned_cols=225 Identities=28% Similarity=0.471 Sum_probs=208.6
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCC--CChHH
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIR--SDPKA 1540 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~--~~~~~ 1540 (1833)
.+++++++++.|+++ ..+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .....
T Consensus 2 ~~i~~~~l~~~y~~~-----~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~ 76 (235)
T COG1122 2 RMIEAENLSFRYPGR-----KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLE 76 (235)
T ss_pred ceEEEEEEEEEcCCC-----ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHH
Confidence 368999999999742 57999999999999999999999999999999999999999999999999987 45678
Q ss_pred hccceEEEecCC-CCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcC
Q 000224 1541 ARRLIGYCPQFD-ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1619 (1833)
Q Consensus 1541 ~~~~ig~~pQ~~-~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~ 1619 (1833)
+|+++|||+|++ ..+-.-||.|.+.|.....|++.+++++++.++++.+++.+.+++++.+|||||||||+||.+|+.+
T Consensus 77 ~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~ 156 (235)
T COG1122 77 LRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMG 156 (235)
T ss_pred hhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcC
Confidence 899999999996 2333469999999999999999988999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000224 1620 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693 (1833)
Q Consensus 1620 p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~ 1693 (1833)
|++|+|||||+||||.+++.+++.++++.++ ++.|||++|||++++..+|||+++|++|+++..|+|+++.+.
T Consensus 157 P~iliLDEPta~LD~~~~~~l~~~l~~L~~~-~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 157 PEILLLDEPTAGLDPKGRRELLELLKKLKEE-GGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 9999999999999999999999999999754 346999999999999999999999999999999999888764
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=436.58 Aligned_cols=221 Identities=27% Similarity=0.431 Sum_probs=205.9
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcc
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 637 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ 637 (1833)
..|+++||+|.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++
T Consensus 5 ~~l~~~~l~~~~~----~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~-~~~~r~ 79 (351)
T PRK11432 5 NFVVLKNITKRFG----SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHR-SIQQRD 79 (351)
T ss_pred cEEEEEeEEEEEC----CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCC-CHHHCC
Confidence 4699999999995 34699999999999999999999999999999999999999999999999988642 234578
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEE
Q 000224 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVI 717 (1833)
Q Consensus 638 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vli 717 (1833)
||||||++.+|+.+||+||+.|..+.++.++++.+++++++++.+||.+..++++++|||||||||+|||||+.+|++||
T Consensus 80 ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLL 159 (351)
T PRK11432 80 ICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLL 159 (351)
T ss_pred EEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999999999999887788888888999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q 000224 718 LDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 783 (1833)
Q Consensus 718 LDEPtsgLD~~~r~~l~~~l~~~~~--g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~ 783 (1833)
|||||+|||+.+|+++++.|+++.+ |+|+|++|||++|+..+||||++|++|+++..|++.++.++
T Consensus 160 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 160 FDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999853 89999999999999999999999999999999999888653
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-44 Score=436.54 Aligned_cols=223 Identities=28% Similarity=0.435 Sum_probs=204.3
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhcc
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1543 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~~ 1543 (1833)
+|+++|++|+|++ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .++
T Consensus 3 ~l~i~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~-~~r 76 (356)
T PRK11650 3 GLKLQAVRKSYDG-----KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEP-ADR 76 (356)
T ss_pred EEEEEeEEEEeCC-----CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH-HHC
Confidence 5899999999932 2469999999999999999999999999999999999999999999999999865332 347
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEE
Q 000224 1544 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1623 (1833)
Q Consensus 1544 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~vl 1623 (1833)
+||||||++.+|+.+||+||+.+..+.++.+..+.++++.++++.++|.+..++++.+|||||||||+|||||+.+|++|
T Consensus 77 ~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~ll 156 (356)
T PRK11650 77 DIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVF 156 (356)
T ss_pred CEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 89999999999999999999998877767766667778899999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000224 1624 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693 (1833)
Q Consensus 1624 lLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~ 1693 (1833)
||||||+|||+.+++.+++.|+++.++.| +|+|++|||++|+..+||||++|++|+++..|+++++.++
T Consensus 157 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 157 LFDEPLSNLDAKLRVQMRLEIQRLHRRLK-TTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 99999999999999999999999865444 6899999999999999999999999999999999998654
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=437.21 Aligned_cols=221 Identities=27% Similarity=0.441 Sum_probs=205.4
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcc
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 637 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ 637 (1833)
..|+++||+|+|++ +.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.... ..++.
T Consensus 3 ~~l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~-~~~r~ 77 (353)
T TIGR03265 3 PYLSIDNIRKRFGA----FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLP-PQKRD 77 (353)
T ss_pred cEEEEEEEEEEeCC----eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC-HHHCC
Confidence 35999999999953 46999999999999999999999999999999999999999999999999886422 24678
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEE
Q 000224 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVI 717 (1833)
Q Consensus 638 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vli 717 (1833)
+|||||++.+|+.+||+||+.|+.+.++.++++.+++++++++.+||.+..++++++|||||||||+|||||+.+|++||
T Consensus 78 ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llL 157 (353)
T TIGR03265 78 YGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLL 157 (353)
T ss_pred EEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999999998877777778888899999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q 000224 718 LDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 783 (1833)
Q Consensus 718 LDEPtsgLD~~~r~~l~~~l~~~~-~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~ 783 (1833)
|||||++||+.+|+++++.|+++. + |.|+|++|||++|+..+||||++|++|++++.|++.++.++
T Consensus 158 LDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~ 225 (353)
T TIGR03265 158 LDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225 (353)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999985 3 89999999999999999999999999999999999888653
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-44 Score=435.04 Aligned_cols=223 Identities=27% Similarity=0.417 Sum_probs=204.8
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc--eEEEEcCeeCCCChHHh
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD--GTAFIFGKDIRSDPKAA 1541 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~--G~i~i~G~~i~~~~~~~ 1541 (1833)
.|+++||+|+|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|+++...+. .
T Consensus 5 ~l~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~-~ 77 (362)
T TIGR03258 5 GIRIDHLRVAYGA------NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP-H 77 (362)
T ss_pred EEEEEEEEEEECC------eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH-H
Confidence 4889999999963 469999999999999999999999999999999999999999 999999999865332 3
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCC
Q 000224 1542 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1621 (1833)
Q Consensus 1542 ~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~ 1621 (1833)
++.|||++|++.+|+.+||+||+.+..+.++.+..+.+++++++++.++|.+..++++++|||||||||+|||||+.+|+
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~ 157 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPD 157 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 56799999999999999999999998777777777777889999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000224 1622 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693 (1833)
Q Consensus 1622 vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~ 1693 (1833)
+|||||||+|||+.+|+.+++.|+++.++.+++|+|++|||++|+..+||||++|++|+++..|+++++.++
T Consensus 158 llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 158 VLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999987543236899999999999999999999999999999999999765
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-44 Score=436.70 Aligned_cols=220 Identities=27% Similarity=0.433 Sum_probs=204.6
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCc--ceEEEcCccCCccHHHhhc
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTT--GDALVFGKNITADMDEIRK 636 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~--G~i~i~g~~i~~~~~~~r~ 636 (1833)
.++++||+|+|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+|++ |+|.++|.++... ...++
T Consensus 5 ~l~~~~l~~~~~~----~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~-~~~~r 79 (362)
T TIGR03258 5 GIRIDHLRVAYGA----NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHA-PPHKR 79 (362)
T ss_pred EEEEEEEEEEECC----eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCC-CHHHC
Confidence 5899999999953 469999999999999999999999999999999999999999 9999999988532 22457
Q ss_pred ceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEE
Q 000224 637 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVV 716 (1833)
Q Consensus 637 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vl 716 (1833)
.||||+|++.+|+.+||+||+.|+...++.++.+.+++++++++.+||.+..++++++|||||||||+|||||+.+|++|
T Consensus 80 ~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~ll 159 (362)
T TIGR03258 80 GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVL 159 (362)
T ss_pred CEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 89999999999999999999999888777887788889999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHh-C--CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q 000224 717 ILDEPTSGMDPYSMRLTWQLIKKIK-K--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 783 (1833)
Q Consensus 717 iLDEPtsgLD~~~r~~l~~~l~~~~-~--g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~ 783 (1833)
||||||+|||+.+|+++++.|+++. + |.|+|++|||++|+..+||||++|++|+++..|++.++..+
T Consensus 160 LLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 160 LLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999985 3 78999999999999999999999999999999999988654
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-44 Score=435.08 Aligned_cols=221 Identities=24% Similarity=0.411 Sum_probs=204.0
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcce
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 638 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~i 638 (1833)
.|+++||+|.|++ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.... ..++.|
T Consensus 3 ~l~i~~l~~~~~~---~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~-~~~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG---KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELE-PADRDI 78 (356)
T ss_pred EEEEEeEEEEeCC---CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC-HHHCCE
Confidence 4899999999942 246999999999999999999999999999999999999999999999999885422 234789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEE
Q 000224 639 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVIL 718 (1833)
Q Consensus 639 g~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliL 718 (1833)
|||||++.+|+.+||+||+.+..+.++.++.+.+++++++++.+||.+..++++++|||||||||+|||||+.+|++|||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLL 158 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLF 158 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999999988777777777888999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q 000224 719 DEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 783 (1833)
Q Consensus 719 DEPtsgLD~~~r~~l~~~l~~~~~--g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~ 783 (1833)
||||++||+.+|+.+++.|+++.+ |.|+|++|||++|+..+||||++|++|+++..|++.++.++
T Consensus 159 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 159 DEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 999999999999999999999853 89999999999999999999999999999999999888543
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=404.84 Aligned_cols=215 Identities=28% Similarity=0.479 Sum_probs=189.1
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcc
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 637 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ 637 (1833)
..|+++||++.|.+ . .||+||||++++|++++|+||||||||||+|+|.|+++|++|+|.+.|.++..... +.+
T Consensus 3 ~~i~v~nl~v~y~~---~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~--~~~ 76 (254)
T COG1121 3 PMIEVENLTVSYGN---R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK--RLR 76 (254)
T ss_pred cEEEEeeeEEEECC---E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc--CCe
Confidence 46999999999953 2 59999999999999999999999999999999999999999999999987753321 467
Q ss_pred eEEEccCC---CCCCCCCHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHh
Q 000224 638 LGVCPQYD---ILFPELTVREHLEMFAVLK----GVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALI 710 (1833)
Q Consensus 638 ig~~~Q~~---~l~~~lTv~e~l~~~~~~~----~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~ 710 (1833)
||||||.. .-|| +||+|-+..+..-+ +...+..+++++++|+.+|+.+.+++++++|||||+||+.|||||+
T Consensus 77 IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~ 155 (254)
T COG1121 77 IGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALA 155 (254)
T ss_pred EEEcCcccccCCCCC-cCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhc
Confidence 99999965 3355 69999998863222 1122334789999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q 000224 711 GDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFL 780 (1833)
Q Consensus 711 ~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~L 780 (1833)
.+|++|+|||||+|+|+.++..+.++|+++++ |+||+++|||++.+..++|||+.|+ +++.|.|++++.
T Consensus 156 ~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~ 225 (254)
T COG1121 156 QNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEV 225 (254)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhc
Confidence 99999999999999999999999999999974 9999999999999999999999985 588999987553
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=411.94 Aligned_cols=221 Identities=32% Similarity=0.531 Sum_probs=197.3
Q ss_pred EEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-h---HH
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-P---KA 1540 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~-~---~~ 1540 (1833)
|+++|+++.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... . ..
T Consensus 1 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 74 (235)
T cd03261 1 IELRGLTKSFGG------RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYR 74 (235)
T ss_pred CeEEEEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHH
Confidence 468999999952 4699999999999999999999999999999999999999999999999988542 2 34
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHHHc-CCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcC
Q 000224 1541 ARRLIGYCPQFDALLEYLTVQEHLELYARIK-GVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1619 (1833)
Q Consensus 1541 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~-g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~ 1619 (1833)
.++.|||+||++.+++.+|++||+.+..... +.+.++..+++.++++.+++.+..++++++|||||||||+||+||+.+
T Consensus 75 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~ 154 (235)
T cd03261 75 LRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALD 154 (235)
T ss_pred HhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 6778999999999999999999998765433 344445566788899999998888999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1620 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1620 p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
|++|||||||+|||+.+++.+++.|++++++.| +|||++|||++++..+|||+++|++|++++.|+++++.+
T Consensus 155 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 155 PELLLYDEPTAGLDPIASGVIDDLIRSLKKELG-LTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHhcC-cEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 999999999999999999999999999864334 589999999999999999999999999999999988764
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=407.81 Aligned_cols=219 Identities=38% Similarity=0.599 Sum_probs=198.1
Q ss_pred EEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccc
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1544 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~~~ 1544 (1833)
|+++|++|+|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.......+++
T Consensus 1 i~~~~~~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (220)
T cd03265 1 IEVENLVKKYGD------FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRR 74 (220)
T ss_pred CEEEEEEEEECC------EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhc
Confidence 468999999953 46999999999999999999999999999999999999999999999999876544456778
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000224 1545 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1624 (1833)
Q Consensus 1545 ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~vll 1624 (1833)
+||+||++.+++.+|++||+.+....++....+.++++.++++.++|.+..++++.+|||||||||+||+||+.+|++||
T Consensus 75 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~lll 154 (220)
T cd03265 75 IGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLF 154 (220)
T ss_pred EEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999899999999999987766666555556678899999999988899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000224 1625 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690 (1833)
Q Consensus 1625 LDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l 1690 (1833)
|||||+|||+.+++.+++.|++++++.| +|||++||+++++..+|||+++|++|++++.|+++++
T Consensus 155 lDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 155 LDEPTIGLDPQTRAHVWEYIEKLKEEFG-MTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred EcCCccCCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999865434 5899999999999999999999999999999988765
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=403.46 Aligned_cols=232 Identities=28% Similarity=0.436 Sum_probs=213.0
Q ss_pred eEEEEeEEEEcCCCc------------------cccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCce
Q 000224 1464 IIYLRNLRKVYPGGK------------------RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDG 1525 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~------------------~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G 1525 (1833)
.|+++|+.|.||++. +.+....|+|+||+|++|||+.|+|-+|||||||+|+|.++++||+|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 588999999998642 12345678999999999999999999999999999999999999999
Q ss_pred EEEEcCeeCCC-ChHH----hccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCC
Q 000224 1526 TAFIFGKDIRS-DPKA----ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSF 1600 (1833)
Q Consensus 1526 ~i~i~G~~i~~-~~~~----~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~ 1600 (1833)
+|.++|.|+.. +..+ .|+++++|+|..+|+|..||.||..|...+.|+++++.++++.++|+.+||..+.++++.
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~ 163 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN 163 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc
Confidence 99999999865 3322 356799999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCE
Q 000224 1601 TLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQ 1680 (1833)
Q Consensus 1601 ~LSgG~kqrl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~ 1680 (1833)
+|||||||||.|||||+.+|+||++|||+|+|||--|.++.+-|.++.++-+ +|||++|||++|+.++.|||+||++|+
T Consensus 164 eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~-KTIvFitHDLdEAlriG~rIaimkdG~ 242 (386)
T COG4175 164 ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLK-KTIVFITHDLDEALRIGDRIAIMKDGE 242 (386)
T ss_pred cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhC-CeEEEEecCHHHHHhccceEEEecCCe
Confidence 9999999999999999999999999999999999999999999999976554 699999999999999999999999999
Q ss_pred EEEecChhHHHhhcCC
Q 000224 1681 LRCIGSPQHLKTRFGN 1696 (1833)
Q Consensus 1681 i~~~g~~~~l~~~~~~ 1696 (1833)
++..|+|+|+.....+
T Consensus 243 ivQ~Gtp~eIl~~PAn 258 (386)
T COG4175 243 IVQVGTPEEILLNPAN 258 (386)
T ss_pred EEEeCCHHHHHcCccH
Confidence 9999999999765443
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-44 Score=408.33 Aligned_cols=217 Identities=39% Similarity=0.603 Sum_probs=198.8
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcceE
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 639 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 639 (1833)
|+++|+++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.......++.+|
T Consensus 1 i~~~~~~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD----FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC----EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEE
Confidence 478999999953 4699999999999999999999999999999999999999999999999887543345677899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEEe
Q 000224 640 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 719 (1833)
Q Consensus 640 ~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 719 (1833)
||||++.+++.+||+||+.+.....+.+.++.+++++++++.+||.+..++++++||||||||++||+||+.+|+++|||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllD 156 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLD 156 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999999998877667666666778999999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q 000224 720 EPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFL 780 (1833)
Q Consensus 720 EPtsgLD~~~r~~l~~~l~~~~-~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~L 780 (1833)
|||+|||+.+++.++++|++++ + |+|||++||+++++..+||||++|++|+++..|++.++
T Consensus 157 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 157 EPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999985 4 89999999999999999999999999999999887654
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-44 Score=382.30 Aligned_cols=221 Identities=24% Similarity=0.436 Sum_probs=204.4
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc-----eEEEEcCeeCCC-
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD-----GTAFIFGKDIRS- 1536 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~-----G~i~i~G~~i~~- 1536 (1833)
+.++++||++.|+ ++.||+|||++|++++++||+||+||||||++|++..+..... |+|.++|+++..
T Consensus 6 ~~~~~~~l~~yYg------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~ 79 (253)
T COG1117 6 PAIEVRDLNLYYG------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDP 79 (253)
T ss_pred ceeEecceeEEEC------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCC
Confidence 5689999999996 4679999999999999999999999999999999999988765 999999999965
Q ss_pred --ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHHHH
Q 000224 1537 --DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKRKL 1610 (1833)
Q Consensus 1537 --~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgG~kqrl 1610 (1833)
+..++|++||+|+|.|.-|| +|++||+.+..++.|+.+++.++.+++.|+...|. +..++.+..|||||||||
T Consensus 80 ~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRL 158 (253)
T COG1117 80 KVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRL 158 (253)
T ss_pred CCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHH
Confidence 46789999999999999999 99999999999999988878888899999988885 457788999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000224 1611 SVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690 (1833)
Q Consensus 1611 ~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l 1690 (1833)
||||||+-+|+|||||||||+|||.+...+.++|.++++ +-|||+|||+|..+.+++|+.++|..|++++.|+.+++
T Consensus 159 cIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~---~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 159 CIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK---KYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred HHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh---ccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 999999999999999999999999999999999999963 36999999999999999999999999999999999888
Q ss_pred Hhh
Q 000224 1691 KTR 1693 (1833)
Q Consensus 1691 ~~~ 1693 (1833)
...
T Consensus 236 F~~ 238 (253)
T COG1117 236 FTN 238 (253)
T ss_pred hcC
Confidence 754
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=430.58 Aligned_cols=227 Identities=30% Similarity=0.513 Sum_probs=203.7
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-h---H
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-P---K 1539 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~-~---~ 1539 (1833)
+|+++||+|+|+.+. +++.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++... . .
T Consensus 1 mi~i~~l~~~y~~~~--~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 78 (343)
T PRK11153 1 MIELKNISKVFPQGG--RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELR 78 (343)
T ss_pred CEEEEeEEEEeCCCC--CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHH
Confidence 478999999996311 135699999999999999999999999999999999999999999999999998642 2 2
Q ss_pred HhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcC
Q 000224 1540 AARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1619 (1833)
Q Consensus 1540 ~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~ 1619 (1833)
..+++|||+||++.+++.+|++||+.+.....+.+..+.++++.++++.++|.+..++++.+|||||||||+|||||+.+
T Consensus 79 ~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~ 158 (343)
T PRK11153 79 KARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASN 158 (343)
T ss_pred HHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcC
Confidence 34678999999999999999999999887766766656667788999999999889999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000224 1620 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693 (1833)
Q Consensus 1620 p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~ 1693 (1833)
|++|||||||+|||+.+++.+++.|++++++.| +|||++||++++++.+|||+++|++|++++.|+++++...
T Consensus 159 p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g-~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~ 231 (343)
T PRK11153 159 PKVLLCDEATSALDPATTRSILELLKDINRELG-LTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSH 231 (343)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999965444 6899999999999999999999999999999999988654
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=411.93 Aligned_cols=219 Identities=32% Similarity=0.556 Sum_probs=198.0
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-c---HHHhh
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-D---MDEIR 635 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~---~~~~r 635 (1833)
|+++||++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. + ....|
T Consensus 1 l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 76 (235)
T cd03261 1 IELRGLTKSFGG----RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLR 76 (235)
T ss_pred CeEEEEEEEECC----EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHh
Confidence 468999999953 469999999999999999999999999999999999999999999999998753 2 24567
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCc
Q 000224 636 KGLGVCPQYDILFPELTVREHLEMFAVLK-GVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSK 714 (1833)
Q Consensus 636 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~ 714 (1833)
+.+||+||++.+++.+||+||+.+..... +.+.++.++++.++++.+||.+..++++++|||||||||+|||||+.+|+
T Consensus 77 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~ 156 (235)
T cd03261 77 RRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPE 156 (235)
T ss_pred cceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 88999999999999999999998875433 45556667789999999999988899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 715 VVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 715 vliLDEPtsgLD~~~r~~l~~~l~~~~--~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
+|||||||+|||+.+++.++++|++++ .|+|||++||+++++..+||||++|++|++++.|++.++..
T Consensus 157 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 157 LLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 999999999999999999999999985 38999999999999999999999999999999999877643
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=431.39 Aligned_cols=224 Identities=32% Similarity=0.487 Sum_probs=204.2
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-c---HHHhh
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-D---MDEIR 635 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~---~~~~r 635 (1833)
|+++||+|+|+..++.+.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. + ....|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632223579999999999999999999999999999999999999999999999998853 2 23457
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcE
Q 000224 636 KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 715 (1833)
Q Consensus 636 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 715 (1833)
++|||+||++.+++.+||+||+.+.....+.+..+.++++.++++.+||.+..++++++||||||||++|||||+.+|++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~i 161 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKV 161 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 88999999999999999999999987777777767778899999999999989999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q 000224 716 VILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 783 (1833)
Q Consensus 716 liLDEPtsgLD~~~r~~l~~~l~~~~-~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~ 783 (1833)
|||||||+|||+.+++.++++|++++ + |+|||++||+++++..+||||++|++|++++.|++.++...
T Consensus 162 LlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~ 231 (343)
T PRK11153 162 LLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSH 231 (343)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999985 3 89999999999999999999999999999999999888654
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-44 Score=394.04 Aligned_cols=241 Identities=31% Similarity=0.452 Sum_probs=217.8
Q ss_pred eEEEEeEEEEcCCCc---------------cccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEE
Q 000224 1464 IIYLRNLRKVYPGGK---------------RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAF 1528 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~---------------~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~ 1528 (1833)
++.++||+|.|.... +.....||+|+||+|++||++|++|+||||||||+|||+|++.|++|.|.
T Consensus 3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~ 82 (325)
T COG4586 3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR 82 (325)
T ss_pred eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEE
Confidence 577888888885321 01134699999999999999999999999999999999999999999999
Q ss_pred EcCeeCCCChHHhccceEEEe-cCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHH
Q 000224 1529 IFGKDIRSDPKAARRLIGYCP-QFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNK 1607 (1833)
Q Consensus 1529 i~G~~i~~~~~~~~~~ig~~p-Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~k 1607 (1833)
++|++...+.++.-+++|+|. |...++.++.+.|.+.....++.++.++.+++.+.+.+.++|++..+.+++.||-|||
T Consensus 83 V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqR 162 (325)
T COG4586 83 VNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQR 162 (325)
T ss_pred ecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHH
Confidence 999998777777777888875 5577888888999999988899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecCh
Q 000224 1608 RKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1687 (1833)
Q Consensus 1608 qrl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~ 1687 (1833)
+|+.||.||+++|+||+|||||-|||..++..+++.|++++++++ +||++|||+|+.++++||||+.|++|+++.+|+.
T Consensus 163 mraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~-aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l 241 (325)
T COG4586 163 MRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQ-ATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTL 241 (325)
T ss_pred HHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhC-ceEEEEecchhhHHHhhhheEEeeCCcEeecccH
Confidence 999999999999999999999999999999999999999987765 7999999999999999999999999999999999
Q ss_pred hHHHhhcCCeEEEEEeec
Q 000224 1688 QHLKTRFGNFLELEVKPT 1705 (1833)
Q Consensus 1688 ~~l~~~~~~~~~~~~~~~ 1705 (1833)
++|+.+|+...++.+...
T Consensus 242 ~~l~~~f~~~k~~~~el~ 259 (325)
T COG4586 242 AQLQEQFGPYKEFSVELK 259 (325)
T ss_pred HHHHHHhCCceEEEEEEc
Confidence 999999998877665543
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=431.16 Aligned_cols=224 Identities=28% Similarity=0.482 Sum_probs=205.2
Q ss_pred cceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHh
Q 000224 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAA 1541 (1833)
Q Consensus 1462 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 1541 (1833)
.++|+++|++|.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .
T Consensus 12 ~~~L~l~~l~~~~~~------~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~-~ 84 (375)
T PRK09452 12 SPLVELRGISKSFDG------KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPA-E 84 (375)
T ss_pred CceEEEEEEEEEECC------eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH-H
Confidence 357999999999963 468999999999999999999999999999999999999999999999999865332 3
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCC
Q 000224 1542 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1621 (1833)
Q Consensus 1542 ~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~ 1621 (1833)
+++|||+||++.+|+.+||+||+.+..+.++.+..+.+++++++++.++|.+..++++.+|||||||||+|||||+.+|+
T Consensus 85 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~ 164 (375)
T PRK09452 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPK 164 (375)
T ss_pred HCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 56799999999999999999999987776677666667788999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000224 1622 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693 (1833)
Q Consensus 1622 vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~ 1693 (1833)
+|||||||+|||+.+|+.+++.|+++.++.| +|+|++|||++|+..+||||++|++|+++..|+++++.++
T Consensus 165 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g-~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~ 235 (375)
T PRK09452 165 VLLLDESLSALDYKLRKQMQNELKALQRKLG-ITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235 (375)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999975444 6899999999999999999999999999999999998764
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=432.03 Aligned_cols=221 Identities=24% Similarity=0.401 Sum_probs=204.5
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcc
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 637 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ 637 (1833)
..++++||+|.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++.
T Consensus 13 ~~L~l~~l~~~~~~----~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~-~~~r~ 87 (375)
T PRK09452 13 PLVELRGISKSFDG----KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVP-AENRH 87 (375)
T ss_pred ceEEEEEEEEEECC----eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-HHHCC
Confidence 46999999999953 46999999999999999999999999999999999999999999999999885422 23578
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEE
Q 000224 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVI 717 (1833)
Q Consensus 638 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vli 717 (1833)
+|||||++.+|+.+||+||+.|+.+.++.+..+.+++++++++.+||.+..++++.+|||||||||+|||||+.+|++||
T Consensus 88 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llL 167 (375)
T PRK09452 88 VNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLL 167 (375)
T ss_pred EEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999999998777777777778899999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q 000224 718 LDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 783 (1833)
Q Consensus 718 LDEPtsgLD~~~r~~l~~~l~~~~~--g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~ 783 (1833)
|||||++||+.+|+.+++.|+++.+ |.|+|++|||++|+..+||||++|++|+++..|++.++.++
T Consensus 168 LDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~ 235 (375)
T PRK09452 168 LDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235 (375)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999853 89999999999999999999999999999999999887653
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-43 Score=430.55 Aligned_cols=224 Identities=29% Similarity=0.476 Sum_probs=205.7
Q ss_pred cceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHh
Q 000224 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAA 1541 (1833)
Q Consensus 1462 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 1541 (1833)
..+|+++|++|+|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+ ..
T Consensus 17 ~~~l~l~~v~~~~~~------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~-~~ 89 (377)
T PRK11607 17 TPLLEIRNLTKSFDG------QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVP-PY 89 (377)
T ss_pred CceEEEEeEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-HH
Confidence 357999999999952 46999999999999999999999999999999999999999999999999986533 24
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCC
Q 000224 1542 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1621 (1833)
Q Consensus 1542 ~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~ 1621 (1833)
++.|||+||++.+|+.+||.||+.+..+.++.+..+.++++.++++.++|.+..++++.+|||||||||+|||||+.+|+
T Consensus 90 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~ 169 (377)
T PRK11607 90 QRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPK 169 (377)
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 67899999999999999999999988776677766777888999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000224 1622 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693 (1833)
Q Consensus 1622 vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~ 1693 (1833)
+|||||||+|||+.+|+.+++.|+++.++.| .|+|++|||++|+..+|||+++|++|+++..|+++++.++
T Consensus 170 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~ 240 (377)
T PRK11607 170 LLLLDEPMGALDKKLRDRMQLEVVDILERVG-VTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH 240 (377)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999865544 6899999999999999999999999999999999998764
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=428.10 Aligned_cols=222 Identities=25% Similarity=0.404 Sum_probs=200.9
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhcc
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1543 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~~ 1543 (1833)
+|+++|++|+|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++...+ ..++
T Consensus 2 ~L~i~~l~~~~~~------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~-~~~r 74 (353)
T PRK10851 2 SIEIANIKKSFGR------TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLH-ARDR 74 (353)
T ss_pred EEEEEEEEEEeCC------eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC-HHHC
Confidence 4889999999963 45999999999999999999999999999999999999999999999999986532 2356
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHc----CCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcC
Q 000224 1544 LIGYCPQFDALLEYLTVQEHLELYARIK----GVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1619 (1833)
Q Consensus 1544 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~----g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~ 1619 (1833)
+||||||++.+++.+||+||+.+..... +.+.++.++++.++++.++|.+..++++.+|||||||||+|||||+.+
T Consensus 75 ~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~ 154 (353)
T PRK10851 75 KVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVE 154 (353)
T ss_pred CEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999876542 344455667889999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000224 1620 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693 (1833)
Q Consensus 1620 p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~ 1693 (1833)
|++|||||||+|||+.+++.+++.|+++.++.| +|+|++|||++++..+||||++|++|+++..|+++++.++
T Consensus 155 P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g-~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 155 PQILLLDEPFGALDAQVRKELRRWLRQLHEELK-FTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999975434 6899999999999999999999999999999999998654
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=404.42 Aligned_cols=216 Identities=35% Similarity=0.582 Sum_probs=197.4
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcceE
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 639 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 639 (1833)
++++||++.|+++.+...+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.......++.+|
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 68999999996432222699999999999999999999999999999999999999999999999988654456678899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEEe
Q 000224 640 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 719 (1833)
Q Consensus 640 ~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 719 (1833)
||||++.+++.+||+||+.+....++.+..+.++++.++++.+|+.+..++++++||||||||++|||||+.+|++||||
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlD 161 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLD 161 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999999998777667666667788999999999998899999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeec
Q 000224 720 EPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 775 (1833)
Q Consensus 720 EPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G 775 (1833)
|||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|++++.|
T Consensus 162 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 162 EPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999985 5899999999999999999999999999998654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-43 Score=404.83 Aligned_cols=219 Identities=54% Similarity=0.863 Sum_probs=200.6
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcceE
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 639 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 639 (1833)
|+++||++.|++. .+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.......++++|
T Consensus 1 l~~~~l~~~~~~~--~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG--TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC--CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEE
Confidence 4689999999532 14699999999999999999999999999999999999999999999999988654455677899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEEe
Q 000224 640 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 719 (1833)
Q Consensus 640 ~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 719 (1833)
|++|++.+++.+|++||+.+.....+.+..+.+++++++++.++|.+..++++++||||||||++|||||+.+|++||||
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 158 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLD 158 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 99999999989999999998877777666666778999999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q 000224 720 EPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFL 780 (1833)
Q Consensus 720 EPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~L 780 (1833)
|||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++|++++.|++.++
T Consensus 159 EP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 159 EPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999998789999999999999999999999999999999988765
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=430.33 Aligned_cols=221 Identities=28% Similarity=0.420 Sum_probs=205.0
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcc
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 637 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ 637 (1833)
..++++|++|.|+ +..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++... ...++.
T Consensus 18 ~~l~l~~v~~~~~----~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~-~~~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFD----GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHV-PPYQRP 92 (377)
T ss_pred ceEEEEeEEEEEC----CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCC-CHHHCC
Confidence 4699999999995 34699999999999999999999999999999999999999999999999988532 235678
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEE
Q 000224 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVI 717 (1833)
Q Consensus 638 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vli 717 (1833)
+|||||++.+|+.+||.||+.+..+.++.+..+.++++.++++.++|.+..++++++|||||||||+|||||+.+|++||
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLL 172 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLL 172 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999999998877777777888899999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q 000224 718 LDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 783 (1833)
Q Consensus 718 LDEPtsgLD~~~r~~l~~~l~~~~--~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~ 783 (1833)
|||||++||+.+|+++++.|+++. .|.|+|++|||++|+..+||||++|++|++++.|++.++.++
T Consensus 173 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~ 240 (377)
T PRK11607 173 LDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH 240 (377)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC
Confidence 999999999999999999998874 389999999999999999999999999999999999888654
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=428.22 Aligned_cols=220 Identities=24% Similarity=0.408 Sum_probs=201.2
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcce
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 638 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~i 638 (1833)
.|+++||+|.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ...++++
T Consensus 2 ~L~i~~l~~~~~~----~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~-~~~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGR----TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRL-HARDRKV 76 (353)
T ss_pred EEEEEEEEEEeCC----eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-CHHHCCE
Confidence 3889999999953 4699999999999999999999999999999999999999999999999988542 2345789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCc
Q 000224 639 GVCPQYDILFPELTVREHLEMFAVLK----GVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSK 714 (1833)
Q Consensus 639 g~~~Q~~~l~~~lTv~e~l~~~~~~~----~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~ 714 (1833)
|||||++.+|+.+||+||+.+..... +.+.++.++++.++++.++|.+..++++.+|||||||||+|||||+.+|+
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~ 156 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQ 156 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999876542 34566678899999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q 000224 715 VVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 783 (1833)
Q Consensus 715 vliLDEPtsgLD~~~r~~l~~~l~~~~-~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~ 783 (1833)
+|||||||+|||+.+|+.+++.|++++ + |+|+|++|||++++..+||||++|++|+++..|++.++.++
T Consensus 157 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 157 ILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999985 3 89999999999999999999999999999999999888543
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-43 Score=415.69 Aligned_cols=227 Identities=29% Similarity=0.466 Sum_probs=199.9
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC---hHH
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD---PKA 1540 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~---~~~ 1540 (1833)
.|+++||+|.|++... ..+.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...
T Consensus 2 ~l~~~~l~~~y~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13637 2 SIKIENLTHIYMEGTP-FEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSD 80 (287)
T ss_pred EEEEEEEEEECCCCCc-cccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHH
Confidence 3889999999964210 124699999999999999999999999999999999999999999999999998652 245
Q ss_pred hccceEEEecCCC-CCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc--cccCCCCCCCChhHHHHHHHHHHHh
Q 000224 1541 ARRLIGYCPQFDA-LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL--KHAKKPSFTLSGGNKRKLSVAIAMI 1617 (1833)
Q Consensus 1541 ~~~~ig~~pQ~~~-l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LSgG~kqrl~lA~al~ 1617 (1833)
.+++|||+||++. .+..+||+||+.+.....+.+.++..+++.++++.+||. +..++++++||||||||++||+||+
T Consensus 81 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~ 160 (287)
T PRK13637 81 IRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVA 160 (287)
T ss_pred HhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHH
Confidence 6788999999863 223479999999876666777766777889999999997 5689999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1618 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1618 ~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
.+|++|||||||+|||+.+++.++++|++++++.| +|||++|||++++..+||||++|++|++++.|+++++.+
T Consensus 161 ~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g-~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 161 MEPKILILDEPTAGLDPKGRDEILNKIKELHKEYN-MTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999965434 689999999999999999999999999999999998764
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-43 Score=429.24 Aligned_cols=222 Identities=29% Similarity=0.458 Sum_probs=202.1
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhcc
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1543 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~~ 1543 (1833)
.|+++|++|+|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .++
T Consensus 3 ~l~i~~l~~~~~~------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~-~~~ 75 (369)
T PRK11000 3 SVTLRNVTKAYGD------VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP-AER 75 (369)
T ss_pred EEEEEEEEEEeCC------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH-hHC
Confidence 5899999999953 469999999999999999999999999999999999999999999999999865332 346
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEE
Q 000224 1544 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1623 (1833)
Q Consensus 1544 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~vl 1623 (1833)
+|||+||++.+++.+||+||+.+....++.+..+.++++.++++.++|.+..++++.+|||||||||+|||||+.+|++|
T Consensus 76 ~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lL 155 (369)
T PRK11000 76 GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVF 155 (369)
T ss_pred CEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 79999999999999999999998776666666666678899999999998899999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000224 1624 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693 (1833)
Q Consensus 1624 lLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~ 1693 (1833)
||||||+|||+.+++.+++.|+++.++.| +|||++|||++++..+||||++|++|+++..|+++++.++
T Consensus 156 LLDEPts~LD~~~~~~l~~~L~~l~~~~g-~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 156 LLDEPLSNLDAALRVQMRIEISRLHKRLG-RTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHHhC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999865444 6899999999999999999999999999999999988653
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-43 Score=430.51 Aligned_cols=219 Identities=28% Similarity=0.483 Sum_probs=202.0
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcce
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 638 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~i 638 (1833)
.|+++||+|.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++.|
T Consensus 3 ~l~i~~l~~~~~~----~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~-~~~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD----VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVP-PAERGV 77 (369)
T ss_pred EEEEEEEEEEeCC----eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-HhHCCE
Confidence 4899999999953 46999999999999999999999999999999999999999999999999885322 235679
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEE
Q 000224 639 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVIL 718 (1833)
Q Consensus 639 g~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliL 718 (1833)
|||||++.+|+.+||+||+.++...++.+.++.+++++++++.+||.+..++++.+|||||||||+|||||+.+|++|||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLL 157 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLL 157 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999999987777777777778899999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 719 DEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 719 DEPtsgLD~~~r~~l~~~l~~~~-~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
||||+|||+.+++.+++.|+++. + |+|+|++|||++++..+||||++|++|+++..|++.++..
T Consensus 158 DEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 158 DEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (369)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999984 3 8999999999999999999999999999999999988754
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=427.37 Aligned_cols=209 Identities=32% Similarity=0.479 Sum_probs=195.1
Q ss_pred cccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHHh----hcceEEEccCCCCCC
Q 000224 575 NCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEI----RKGLGVCPQYDILFP 649 (1833)
Q Consensus 575 ~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~----r~~ig~~~Q~~~l~~ 649 (1833)
.+.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. +.... |+++|||||++.+|+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 4569999999999999999999999999999999999999999999999999864 33333 678999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHH
Q 000224 650 ELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYS 729 (1833)
Q Consensus 650 ~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLDEPtsgLD~~~ 729 (1833)
.+||+||+.+.....|.++++.++++.++++.+||++..++++++|||||||||+|||||+.+|++|||||||+||||.+
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~ 164 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLI 164 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 99999999998888888877788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q 000224 730 MRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 783 (1833)
Q Consensus 730 r~~l~~~l~~~~--~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~ 783 (1833)
++++.+.+++++ .|+|||++|||++|+..+||||++|++|+++..|+++++...
T Consensus 165 r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 165 RDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 999999999985 389999999999999999999999999999999999887653
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-43 Score=425.33 Aligned_cols=211 Identities=27% Similarity=0.448 Sum_probs=195.1
Q ss_pred ccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHh----ccceEEEecCCCCCC
Q 000224 1482 AKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAA----RRLIGYCPQFDALLE 1556 (1833)
Q Consensus 1482 ~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~----~~~ig~~pQ~~~l~~ 1556 (1833)
.+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. +.... |++||||||++.+++
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 4669999999999999999999999999999999999999999999999999875 34344 678999999999999
Q ss_pred CCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 000224 1557 YLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIA 1636 (1833)
Q Consensus 1557 ~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~vllLDEPTsgLD~~~ 1636 (1833)
.+||+||+.+.....|.+.++..+++.++++.+||....++++.+|||||||||+|||||+.+|++|||||||+||||.+
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~ 164 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLI 164 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 99999999988777777776777889999999999989999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000224 1637 KRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693 (1833)
Q Consensus 1637 ~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~ 1693 (1833)
++.+.+.+.++.++.| +|||++|||++|+..+||||++|++|+++..|+++++..+
T Consensus 165 r~~l~~~l~~l~~~~~-~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 165 RDSMQDELKKLQATLQ-KTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred HHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 9999999999865444 6899999999999999999999999999999999998654
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=402.44 Aligned_cols=211 Identities=33% Similarity=0.538 Sum_probs=191.4
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcceE
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 639 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 639 (1833)
++++||++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.+|
T Consensus 1 l~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-~~~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS----VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGV-PPERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC----eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcC-chhhccEE
Confidence 468999999953 4699999999999999999999999999999999999999999999999987532 22456899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEEe
Q 000224 640 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 719 (1833)
Q Consensus 640 ~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 719 (1833)
|+||++.+++.+|++||+.+.....+......++++.++++.+||.+..++++.+||||||||++|||||+.+|++||||
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllD 155 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLD 155 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999999988765555555566778899999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeec
Q 000224 720 EPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 775 (1833)
Q Consensus 720 EPtsgLD~~~r~~l~~~l~~~~--~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G 775 (1833)
|||+|||+.++++++++|++++ .|+|||++||++++++.+||||++|++|++++.|
T Consensus 156 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 156 EPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999984 3899999999999999999999999999998755
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-43 Score=401.14 Aligned_cols=213 Identities=33% Similarity=0.516 Sum_probs=190.2
Q ss_pred EEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccc
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1544 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~~~ 1544 (1833)
++++|++|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ..+++
T Consensus 1 l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~-~~~~~ 73 (213)
T cd03259 1 LELKGLSKTYGS------VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP-PERRN 73 (213)
T ss_pred CeeeeeEEEeCC------eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc-hhhcc
Confidence 468999999953 46999999999999999999999999999999999999999999999999886432 24567
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000224 1545 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1624 (1833)
Q Consensus 1545 ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~vll 1624 (1833)
+||+||++.+++.+|++||+.+.....+......++++.++++.+++.+..++++.+||||||||++||+||+.+|++||
T Consensus 74 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~ll 153 (213)
T cd03259 74 IGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLL 153 (213)
T ss_pred EEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999888889999999876555555444455678889999999988899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEec
Q 000224 1625 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1685 (1833)
Q Consensus 1625 LDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g 1685 (1833)
|||||+|||+.+++.+++.|++++++.| +|||++||++++++.+|||+++|++|++++.|
T Consensus 154 lDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 154 LDEPLSALDAKLREELREELKELQRELG-ITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcC-CEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999864444 58999999999999999999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-43 Score=415.18 Aligned_cols=224 Identities=31% Similarity=0.513 Sum_probs=200.3
Q ss_pred eEEEEeeEEEecCCCC-cccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCcc---HHHh
Q 000224 559 CIQIRKLHKVYATKRG-NCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD---MDEI 634 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~-~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~---~~~~ 634 (1833)
.|+++||+|.|++..+ .+.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++... ....
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 4889999999964221 24699999999999999999999999999999999999999999999999988542 2456
Q ss_pred hcceEEEccCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC--cccccccCCCChhHHHHHHHHHHHhC
Q 000224 635 RKGLGVCPQYDI-LFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA--DKVNIVVRALSGGMKRKLSLGIALIG 711 (1833)
Q Consensus 635 r~~ig~~~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~~~~~~LSgGqkqrl~lA~al~~ 711 (1833)
++.+|||||++. .+...||+||+.++....+.+.++.++++.++++.+||. +..++++++||||||||++|||||+.
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~ 161 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM 161 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc
Confidence 789999999973 233579999999877767777777888999999999997 66899999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 712 DSKVVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 712 ~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
+|++|||||||+|||+.++++++++|++++ + |+|||++||+++++..+||||++|++|++++.|++.++.+
T Consensus 162 ~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 162 EPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999985 3 8999999999999999999999999999999999887643
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-43 Score=401.37 Aligned_cols=210 Identities=26% Similarity=0.475 Sum_probs=190.8
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc----cHHHhh
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA----DMDEIR 635 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~----~~~~~r 635 (1833)
++++|+++.|++. .+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....|
T Consensus 2 l~~~~l~~~~~~~--~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (216)
T TIGR00960 2 IRFEQVSKAYPGG--HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLR 79 (216)
T ss_pred eEEEEEEEEecCC--CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHH
Confidence 7899999999532 2359999999999999999999999999999999999999999999999998743 122457
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcE
Q 000224 636 KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 715 (1833)
Q Consensus 636 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 715 (1833)
+.+||+||++.+++.+||.||+.+.....+...++.++++.++++.+||.+..++++.+||||||||++|||||+.+|++
T Consensus 80 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (216)
T TIGR00960 80 RHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPL 159 (216)
T ss_pred HhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 78999999999999999999999877666666556677899999999999889999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEE
Q 000224 716 VILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSL 771 (1833)
Q Consensus 716 liLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l 771 (1833)
|||||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|++
T Consensus 160 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 160 LLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999985 589999999999999999999999999974
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=426.23 Aligned_cols=229 Identities=24% Similarity=0.420 Sum_probs=203.2
Q ss_pred eEEEEeEEEEcCCCc------------------cccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCce
Q 000224 1464 IIYLRNLRKVYPGGK------------------RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDG 1525 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~------------------~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G 1525 (1833)
+|+++||+|.|+... ..+...+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 688899999887632 11233589999999999999999999999999999999999999999
Q ss_pred EEEEcCeeCCCC-hHH----hccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCC
Q 000224 1526 TAFIFGKDIRSD-PKA----ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSF 1600 (1833)
Q Consensus 1526 ~i~i~G~~i~~~-~~~----~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~ 1600 (1833)
+|+++|.++... ... .++++||+||++.+++.+|++||+.+....++.+..+.++++.++++.++|.+..+++++
T Consensus 84 ~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~ 163 (400)
T PRK10070 84 QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD 163 (400)
T ss_pred EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcc
Confidence 999999998652 222 245799999999999999999999988777776665666778899999999989999999
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCE
Q 000224 1601 TLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQ 1680 (1833)
Q Consensus 1601 ~LSgG~kqrl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~ 1680 (1833)
+|||||||||+|||||+.+|++|||||||+|||+.+++.+++.|+++.++.| +|||++|||++++..+||||++|++|+
T Consensus 164 ~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g-~TIIivTHd~~~~~~~~Dri~vL~~G~ 242 (400)
T PRK10070 164 ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQ-RTIVFISHDLDEAMRIGDRIAIMQNGE 242 (400)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCC-CeEEEEECCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999864444 689999999999999999999999999
Q ss_pred EEEecChhHHHhh
Q 000224 1681 LRCIGSPQHLKTR 1693 (1833)
Q Consensus 1681 i~~~g~~~~l~~~ 1693 (1833)
+++.|+++++.++
T Consensus 243 i~~~g~~~~l~~~ 255 (400)
T PRK10070 243 VVQVGTPDEILNN 255 (400)
T ss_pred EEecCCHHHHHhC
Confidence 9999999988654
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=426.30 Aligned_cols=227 Identities=26% Similarity=0.456 Sum_probs=201.2
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHh
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAA 1541 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 1541 (1833)
.+|+++||+|.|+ ++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.. ...+.
T Consensus 2 ~~L~~~nls~~y~------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~ 75 (402)
T PRK09536 2 PMIDVSDLSVEFG------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAA 75 (402)
T ss_pred ceEEEeeEEEEEC------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHH
Confidence 3689999999995 3569999999999999999999999999999999999999999999999999876 45667
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHHHHc--CCC--hhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHh
Q 000224 1542 RRLIGYCPQFDALLEYLTVQEHLELYARIK--GVA--EYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMI 1617 (1833)
Q Consensus 1542 ~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~--g~~--~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~ 1617 (1833)
+++|||+||++.+++.+|++||+.+....+ ... ....+++++++++.+++.+..++++.+||||||||++|||||+
T Consensus 76 ~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~ 155 (402)
T PRK09536 76 SRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALA 155 (402)
T ss_pred hcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 788999999999988999999998743211 111 2334567889999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhH------HH
Q 000224 1618 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH------LK 1691 (1833)
Q Consensus 1618 ~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~------l~ 1691 (1833)
++|++|||||||+|||+.+++.++++|+++++ +| +|||++|||++++.++|||+++|++|++++.|++++ +.
T Consensus 156 ~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g-~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~~~l~ 233 (402)
T PRK09536 156 QATPVLLLDEPTASLDINHQVRTLELVRRLVD-DG-KTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLR 233 (402)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cC-CEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCcHHHH
Confidence 99999999999999999999999999999974 44 589999999999999999999999999999999987 44
Q ss_pred hhcCCe
Q 000224 1692 TRFGNF 1697 (1833)
Q Consensus 1692 ~~~~~~ 1697 (1833)
+.|+..
T Consensus 234 ~~~~~~ 239 (402)
T PRK09536 234 AAFDAR 239 (402)
T ss_pred HHhCCc
Confidence 556543
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-43 Score=399.56 Aligned_cols=218 Identities=33% Similarity=0.555 Sum_probs=195.7
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhcc
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1543 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~~ 1543 (1833)
+++++|++|+|++.. ....+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.......++
T Consensus 1 ~l~~~~v~~~~~~~~--~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 78 (218)
T cd03266 1 MITADALTKRFRDVK--KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARR 78 (218)
T ss_pred CeEEEEEEEecCCCC--ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHh
Confidence 478999999996421 112699999999999999999999999999999999999999999999999998755556678
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEE
Q 000224 1544 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1623 (1833)
Q Consensus 1544 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~vl 1623 (1833)
++||+||++.+++.+|++||+.+....++.+..+..+++.++++.+++.+..++++.+||||||||++||+||+.+|++|
T Consensus 79 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~il 158 (218)
T cd03266 79 RLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVL 158 (218)
T ss_pred hEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 89999999999998999999998776666655556677889999999998899999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEec
Q 000224 1624 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1685 (1833)
Q Consensus 1624 lLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g 1685 (1833)
||||||+|||+.+++.+++.|++++ ++| +|||++||+++++..+|||+++|++|++++.|
T Consensus 159 llDEPt~~LD~~~~~~l~~~l~~~~-~~~-~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 159 LLDEPTTGLDVMATRALREFIRQLR-ALG-KCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred EEcCCCcCCCHHHHHHHHHHHHHHH-HCC-CEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999985 344 58999999999999999999999999998654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=403.39 Aligned_cols=222 Identities=32% Similarity=0.502 Sum_probs=199.3
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCcc----HHHhh
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD----MDEIR 635 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~----~~~~r 635 (1833)
|+++||++.|+++.+.+.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996431113699999999999999999999999999999999999999999999999987531 12346
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcE
Q 000224 636 KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 715 (1833)
Q Consensus 636 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 715 (1833)
+.+||+||++.+++.+|++||+.+.....+.......+++.++++.+||.+..++++.+||||||||++|||||+.+|++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 161 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKV 161 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 78999999999999999999998876666665555677889999999999889999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 716 VILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 716 liLDEPtsgLD~~~r~~l~~~l~~~~-~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
+||||||+|||+.+++.++++|++++ + |+|||++||+++++..+|||+++|++|++++.|++.++.
T Consensus 162 llLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 162 LLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred EEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999985 3 899999999999999999999999999999999887664
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=403.91 Aligned_cols=221 Identities=29% Similarity=0.452 Sum_probs=195.6
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhcc
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1543 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~~ 1543 (1833)
+++++|+++.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++..... .++
T Consensus 2 ~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~ 74 (239)
T cd03296 2 SIEVRNVSKRFGD------FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV-QER 74 (239)
T ss_pred EEEEEeEEEEECC------EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc-ccc
Confidence 4889999999953 469999999999999999999999999999999999999999999999998754222 356
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCC----ChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcC
Q 000224 1544 LIGYCPQFDALLEYLTVQEHLELYARIKGV----AEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1619 (1833)
Q Consensus 1544 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~----~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~ 1619 (1833)
++||+||++.+++.+|++||+.+....++. ...+..+.+.++++.++|.+..++++.+|||||||||+||+||+.+
T Consensus 75 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 154 (239)
T cd03296 75 NVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVE 154 (239)
T ss_pred ceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 799999999998889999999876554432 2233445678899999998888999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1620 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1620 p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
|++|||||||+|||+.+++.+++.|++++++.| +|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 155 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~-~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 155 PKVLLLDEPFGALDAKVRKELRRWLRRLHDELH-VTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 999999999999999999999999999864434 589999999999999999999999999999999988753
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=426.13 Aligned_cols=225 Identities=30% Similarity=0.467 Sum_probs=201.5
Q ss_pred eEEEEeeEEEecCCC--------------------CcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcc
Q 000224 559 CIQIRKLHKVYATKR--------------------GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTG 618 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~--------------------~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G 618 (1833)
.|+++||+|.|+... +...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 477777777776532 123489999999999999999999999999999999999999999
Q ss_pred eEEEcCccCCc-cHH---H-hhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccC
Q 000224 619 DALVFGKNITA-DMD---E-IRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVR 693 (1833)
Q Consensus 619 ~i~i~g~~i~~-~~~---~-~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~ 693 (1833)
+|.++|.++.. +.. + .++++|||||++.+|+.+||+||+.+.....+.+.++.++++.++++.+||.+..+++++
T Consensus 84 ~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~ 163 (400)
T PRK10070 84 QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD 163 (400)
T ss_pred EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcc
Confidence 99999999853 221 2 246899999999999999999999998877777777777889999999999999999999
Q ss_pred CCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEeeCCEE
Q 000224 694 ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSL 771 (1833)
Q Consensus 694 ~LSgGqkqrl~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~--~g~tiil~tH~~~e~~~l~Dri~im~~G~l 771 (1833)
+|||||||||+|||||+.+|++|||||||+|||+.+++.+++.|++++ .|+|||++||+++++..+||||++|++|++
T Consensus 164 ~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i 243 (400)
T PRK10070 164 ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEV 243 (400)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999984 489999999999999999999999999999
Q ss_pred EeecCHHHHHhh
Q 000224 772 KCCGSSLFLKHQ 783 (1833)
Q Consensus 772 ~~~G~~~~Lk~~ 783 (1833)
++.|++.++...
T Consensus 244 ~~~g~~~~l~~~ 255 (400)
T PRK10070 244 VQVGTPDEILNN 255 (400)
T ss_pred EecCCHHHHHhC
Confidence 999999887543
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=402.16 Aligned_cols=226 Identities=30% Similarity=0.497 Sum_probs=199.0
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-h---H
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-P---K 1539 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~-~---~ 1539 (1833)
+|+++|++++|++.. +.+.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... . .
T Consensus 1 ~i~~~~l~~~~~~~~--~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (233)
T cd03258 1 MIELKNVSKVFGDTG--GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELR 78 (233)
T ss_pred CeEEecceEEccCCC--CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHH
Confidence 478999999996310 112699999999999999999999999999999999999999999999999988642 2 2
Q ss_pred HhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcC
Q 000224 1540 AARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1619 (1833)
Q Consensus 1540 ~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~ 1619 (1833)
..++.+||+||++.+++.+|++||+.+....++.......+.+.++++.+++.+..++++.+||||||||++||+||+.+
T Consensus 79 ~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 158 (233)
T cd03258 79 KARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANN 158 (233)
T ss_pred HHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 34678999999999998899999998766555555444556788899999999889999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1620 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1620 p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
|++|||||||+|||+.+++.+++.|++++++.| +|||++||++++++.+|||+++|++|++++.|+++++.+
T Consensus 159 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~-~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 159 PKVLLCDEATSALDPETTQSILALLRDINRELG-LTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred CCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999864434 689999999999999999999999999999999887753
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=398.56 Aligned_cols=212 Identities=31% Similarity=0.495 Sum_probs=189.1
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-h---H
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-P---K 1539 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~-~---~ 1539 (1833)
+++++|++++|+++ .+.+++++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++... . .
T Consensus 1 ~l~~~~l~~~~~~~----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 76 (216)
T TIGR00960 1 MIRFEQVSKAYPGG----HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIP 76 (216)
T ss_pred CeEEEEEEEEecCC----CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHH
Confidence 47899999999631 24599999999999999999999999999999999999999999999999987532 1 2
Q ss_pred HhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcC
Q 000224 1540 AARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1619 (1833)
Q Consensus 1540 ~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~ 1619 (1833)
..++++||+||++.+++.+|++||+.+.....+....+.++++.++++.+++.+..++++.+|||||||||+||+||+.+
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~ 156 (216)
T TIGR00960 77 FLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHK 156 (216)
T ss_pred HHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 35678999999999999999999998876665655444566788999999999889999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEE
Q 000224 1620 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681 (1833)
Q Consensus 1620 p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i 1681 (1833)
|++|||||||+|||+.+++.+++.|+++++ +| +|||++|||+++++.+|||+++|++|++
T Consensus 157 p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 157 PPLLLADEPTGNLDPELSRDIMRLFEEFNR-RG-TTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999863 44 5899999999999999999999999975
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=415.16 Aligned_cols=223 Identities=26% Similarity=0.441 Sum_probs=199.4
Q ss_pred eEEEEeeEEEecCCC-CcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc--------
Q 000224 559 CIQIRKLHKVYATKR-GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-------- 629 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~-~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-------- 629 (1833)
.|+++||++.|+++. ....+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 388999999996432 12369999999999999999999999999999999999999999999999876521
Q ss_pred -----------------cHHHhhcceEEEccCC-CCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-ccccc
Q 000224 630 -----------------DMDEIRKGLGVCPQYD-ILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA-DKVNI 690 (1833)
Q Consensus 630 -----------------~~~~~r~~ig~~~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~ 690 (1833)
.....++.||||||++ ..+...||+||+.|.....+.+.++.++++.++++.+||. +..++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 161 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR 161 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 2345678899999986 2334579999999887777888888888999999999997 67899
Q ss_pred ccCCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCC
Q 000224 691 VVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANG 769 (1833)
Q Consensus 691 ~~~~LSgGqkqrl~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G 769 (1833)
++.+||||||||++||+||+.+|++|||||||+|||+.+++.++++|++++ +|+|||++|||++++..+||||++|++|
T Consensus 162 ~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G 241 (305)
T PRK13651 162 SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDG 241 (305)
T ss_pred ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999999985 5899999999999999999999999999
Q ss_pred EEEeecCHHHHH
Q 000224 770 SLKCCGSSLFLK 781 (1833)
Q Consensus 770 ~l~~~G~~~~Lk 781 (1833)
++++.|++.++.
T Consensus 242 ~i~~~g~~~~~~ 253 (305)
T PRK13651 242 KIIKDGDTYDIL 253 (305)
T ss_pred EEEEECCHHHHh
Confidence 999999987764
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=396.90 Aligned_cols=211 Identities=34% Similarity=0.620 Sum_probs=193.4
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcceE
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 639 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 639 (1833)
|+++|+++.|++ +.+++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++.......++.+|
T Consensus 1 i~~~~~~~~~~~----~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK----KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC----EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheE
Confidence 468999999953 36999999999999 9999999999999999999999999999999999987543345678899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEEe
Q 000224 640 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 719 (1833)
Q Consensus 640 ~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 719 (1833)
|+||++.+++.+||.||+.+.....+.+.++.+++++++++.+||.+..++++.+||||||||++|||||+.+|+++|||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 155 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVD 155 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999999998776666665566778999999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeec
Q 000224 720 EPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 775 (1833)
Q Consensus 720 EPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G 775 (1833)
|||+|||+.++++++++|+++++++|||++||+++++..+|||+++|++|++++.|
T Consensus 156 EPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 156 EPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred CCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999987799999999999999999999999999998754
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=398.79 Aligned_cols=220 Identities=55% Similarity=0.928 Sum_probs=198.2
Q ss_pred EEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccc
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1544 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~~~ 1544 (1833)
|+++|++|.|+++ .+.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.......+++
T Consensus 1 l~~~~l~~~~~~~----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (220)
T cd03263 1 LQIRNLTKTYKKG----TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQS 76 (220)
T ss_pred CEEEeeEEEeCCC----CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhh
Confidence 4689999999631 246999999999999999999999999999999999999999999999999986544556778
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000224 1545 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1624 (1833)
Q Consensus 1545 ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~vll 1624 (1833)
+||+||++.+++.+|++||+.+....++.+..+..+.+.++++.++|.+..++++.+||||||||++||+||+.+|++||
T Consensus 77 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 156 (220)
T cd03263 77 LGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLL 156 (220)
T ss_pred EEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999998889999999987776666555555678889999999888899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHH
Q 000224 1625 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1691 (1833)
Q Consensus 1625 LDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~ 1691 (1833)
|||||+|||+.+++.+++.|++++ + + +|||++||+++++..+|||+++|++|++++.|++++++
T Consensus 157 lDEP~~~LD~~~~~~l~~~l~~~~-~-~-~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 220 (220)
T cd03263 157 LDEPTSGLDPASRRAIWDLILEVR-K-G-RSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220 (220)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHh-c-C-CEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHcC
Confidence 999999999999999999999985 3 3 58999999999999999999999999999999988753
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=401.30 Aligned_cols=223 Identities=27% Similarity=0.471 Sum_probs=199.1
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhcc
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1543 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~~ 1543 (1833)
+++++|++++|++ +.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.......++
T Consensus 1 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~ 74 (236)
T TIGR03864 1 ALEVAGLSFAYGA------RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALA 74 (236)
T ss_pred CEEEEeeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhh
Confidence 4789999999952 4699999999999999999999999999999999999999999999999988653334456
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEE
Q 000224 1544 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1623 (1833)
Q Consensus 1544 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~vl 1623 (1833)
.++|+||++.+++.+|++||+.+....++....+..+.+.++++.+|+.+..++++.+||||||||++|||||+.+|++|
T Consensus 75 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 154 (236)
T TIGR03864 75 RLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALL 154 (236)
T ss_pred hEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 89999999988888999999988766655554445567888999999998889999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhhc
Q 000224 1624 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRF 1694 (1833)
Q Consensus 1624 lLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~~ 1694 (1833)
||||||+|||+.+++.+++.|+++++++| +|||++||++++++. |||+++|++|++++.|+++++.+.+
T Consensus 155 llDEP~~~LD~~~~~~l~~~l~~~~~~~~-~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~ 223 (236)
T TIGR03864 155 LLDEPTVGLDPASRAAIVAHVRALCRDQG-LSVLWATHLVDEIEA-DDRLVVLHRGRVLADGAAAELRGAL 223 (236)
T ss_pred EEcCCccCCCHHHHHHHHHHHHHHHHhCC-CEEEEEecChhhHhh-CCEEEEEeCCeEEEeCCHHHHHHHc
Confidence 99999999999999999999999864344 589999999999985 9999999999999999999887654
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=420.76 Aligned_cols=228 Identities=25% Similarity=0.422 Sum_probs=200.3
Q ss_pred EEEEeEEEEcCCCc------------------cccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceE
Q 000224 1465 IYLRNLRKVYPGGK------------------RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1526 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~------------------~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~ 1526 (1833)
|+++||.|.||.++ +.+...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+
T Consensus 1 ~~~~~~~k~fg~~~~~~~~~~~~g~~~~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~ 80 (382)
T TIGR03415 1 IDFKNVDVVFGDQPAEALALLDQGKTREEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGS 80 (382)
T ss_pred CEEEeeEEeeCCCHHHHHHHHHcCCCHHHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcE
Confidence 35677777776432 124567999999999999999999999999999999999999999999
Q ss_pred EEEcCe----eCCC-ChH---Hh-ccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCC
Q 000224 1527 AFIFGK----DIRS-DPK---AA-RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKK 1597 (1833)
Q Consensus 1527 i~i~G~----~i~~-~~~---~~-~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~ 1597 (1833)
|+++|+ ++.. +.. +. +++|||+||++.+++.+|++||+.+.....+.++.+.++++.++++.+||.+..++
T Consensus 81 I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~ 160 (382)
T TIGR03415 81 VLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADK 160 (382)
T ss_pred EEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcC
Confidence 999997 4432 222 22 35799999999999999999999988777777766666788999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEE
Q 000224 1598 PSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMV 1677 (1833)
Q Consensus 1598 ~~~~LSgG~kqrl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~ 1677 (1833)
++.+||||||||++|||||+.+|+||||||||+||||.+++.+++.|.++.++.+ +|||++|||++++.++||||++|+
T Consensus 161 ~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~-~TII~iTHdl~e~~~l~DrI~vl~ 239 (382)
T TIGR03415 161 KPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLN-KTIIFVSHDLDEALKIGNRIAIME 239 (382)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999999965444 689999999999999999999999
Q ss_pred CCEEEEecChhHHHhh
Q 000224 1678 GGQLRCIGSPQHLKTR 1693 (1833)
Q Consensus 1678 ~G~i~~~g~~~~l~~~ 1693 (1833)
+|+++..|+++++..+
T Consensus 240 ~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 240 GGRIIQHGTPEEIVLN 255 (382)
T ss_pred CCEEEEecCHHHHhhC
Confidence 9999999999998653
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=412.13 Aligned_cols=221 Identities=30% Similarity=0.472 Sum_probs=199.5
Q ss_pred EEEEeeEEEecCCC-CcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-----cHHH
Q 000224 560 IQIRKLHKVYATKR-GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-----DMDE 633 (1833)
Q Consensus 560 i~i~~l~k~y~~~~-~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-----~~~~ 633 (1833)
|+++||++.|+... ..+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. ....
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999996421 12359999999999999999999999999999999999999999999999998742 2345
Q ss_pred hhcceEEEccCC--CCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-cccccccCCCChhHHHHHHHHHHHh
Q 000224 634 IRKGLGVCPQYD--ILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA-DKVNIVVRALSGGMKRKLSLGIALI 710 (1833)
Q Consensus 634 ~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSgGqkqrl~lA~al~ 710 (1833)
.|+.+||++|++ .+++ .||.||+.|.....+.+..+.++++.++++.+||. +..++.+++||||||||++|||||+
T Consensus 82 ~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~ 160 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILA 160 (288)
T ss_pred HHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHH
Confidence 778999999987 5665 59999999887766777777888999999999996 5679999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 711 GDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 711 ~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
.+|++|||||||+|||+.+++.++++|++++ +|+|||++|||++++..+||||++|++|++++.|++.++.
T Consensus 161 ~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 232 (288)
T PRK13643 161 MEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVF 232 (288)
T ss_pred hCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999986 5899999999999999999999999999999999998764
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=397.99 Aligned_cols=216 Identities=30% Similarity=0.486 Sum_probs=192.2
Q ss_pred EEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccc
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1544 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~~~ 1544 (1833)
++++|++|.|++.. +.+.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .+++
T Consensus 1 l~~~~l~~~~~~~~--~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~----~~~~ 74 (220)
T cd03293 1 LEVRNVSKTYGGGG--GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG----PGPD 74 (220)
T ss_pred CeEEEEEEEcCCCC--cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc----ccCc
Confidence 46899999996321 11469999999999999999999999999999999999999999999999998752 3567
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000224 1545 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1624 (1833)
Q Consensus 1545 ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~vll 1624 (1833)
+||+||++.+++.+|++||+.+....++.+.....+.+.++++.+++.+..++++.+||||||||++||+||+.+|++||
T Consensus 75 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lll 154 (220)
T cd03293 75 RGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLL 154 (220)
T ss_pred EEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999888889999999887666665544555678899999999988899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEE--CCEEEEecCh
Q 000224 1625 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMV--GGQLRCIGSP 1687 (1833)
Q Consensus 1625 LDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~--~G~i~~~g~~ 1687 (1833)
|||||+|||+.+++.+++.|+++.++.| +|||++||+++++..+|||+++|+ +|++++.++.
T Consensus 155 LDEPt~~LD~~~~~~~~~~l~~~~~~~~-~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 155 LDEPFSALDALTREQLQEELLDIWRETG-KTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHcC-CEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999864444 589999999999999999999999 7999988765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=424.37 Aligned_cols=225 Identities=26% Similarity=0.446 Sum_probs=202.3
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHHhhcc
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 637 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~ 637 (1833)
.++++||++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...+.+++
T Consensus 3 ~L~~~nls~~y~----~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ 78 (402)
T PRK09536 3 MIDVSDLSVEFG----DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRR 78 (402)
T ss_pred eEEEeeEEEEEC----CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcc
Confidence 589999999995 3569999999999999999999999999999999999999999999999998864 45567788
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhc--CCC--HHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCC
Q 000224 638 LGVCPQYDILFPELTVREHLEMFAVLK--GVK--EELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDS 713 (1833)
Q Consensus 638 ig~~~Q~~~l~~~lTv~e~l~~~~~~~--~~~--~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p 713 (1833)
+|+|+|++.+++.+||+||+.+....+ ... ....+++++++++.+|+.+..++++++||||||||++|||||+++|
T Consensus 79 ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P 158 (402)
T PRK09536 79 VASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQAT 158 (402)
T ss_pred eEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 999999999988999999998754221 111 2345678999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHH------HHhhhCC
Q 000224 714 KVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLF------LKHQYGV 786 (1833)
Q Consensus 714 ~vliLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~------Lk~~~g~ 786 (1833)
++|||||||+|||+.++++++++|+++. +|+|||++||+++++..+|||+++|++|++++.|++++ +.+.|+.
T Consensus 159 ~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~~~l~~~~~~ 238 (402)
T PRK09536 159 PVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLRAAFDA 238 (402)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCcHHHHHHhCC
Confidence 9999999999999999999999999986 58999999999999999999999999999999999986 5566664
Q ss_pred c
Q 000224 787 G 787 (1833)
Q Consensus 787 g 787 (1833)
.
T Consensus 239 ~ 239 (402)
T PRK09536 239 R 239 (402)
T ss_pred c
Confidence 3
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=411.51 Aligned_cols=225 Identities=27% Similarity=0.423 Sum_probs=198.2
Q ss_pred EEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-----ChH
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-----DPK 1539 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-----~~~ 1539 (1833)
++++||+|+|++... ..+.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. ...
T Consensus 3 l~~~~l~~~y~~~~~-~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 3 ITFQKVEHRYQYKTP-FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEECCCCc-ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 789999999964211 12469999999999999999999999999999999999999999999999998852 234
Q ss_pred HhccceEEEecCC--CCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHHHHHHHH
Q 000224 1540 AARRLIGYCPQFD--ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIAM 1616 (1833)
Q Consensus 1540 ~~~~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~kqrl~lA~al 1616 (1833)
..+++||||||++ .++ ..||+||+.+.....+.+..+.++++.++++.++|. +..++++.+|||||||||+||+||
T Consensus 82 ~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL 160 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVL 160 (290)
T ss_pred HHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 5677899999986 455 479999998876656666666667788999999997 567999999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1617 IGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1617 ~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
+.+|++|||||||+|||+.+++.++++|++++++.| .|||++|||++++..+||||++|++|++++.|+++++.+
T Consensus 161 ~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g-~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 161 AMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKG-LTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999999999965444 689999999999999999999999999999999988754
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=417.44 Aligned_cols=226 Identities=24% Similarity=0.391 Sum_probs=202.6
Q ss_pred ceEEEEeeEEEecCCC---------CcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCC
Q 000224 558 RCIQIRKLHKVYATKR---------GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT 628 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~---------~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~ 628 (1833)
..++++||++.|+.++ +.+.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 5799999999996422 1357999999999999999999999999999999999999999999999999885
Q ss_pred c----cHHHhhcceEEEccCC--CCCCCCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCC-cccccccCCCChhH
Q 000224 629 A----DMDEIRKGLGVCPQYD--ILFPELTVREHLEMFAVLK--GVKEELLESVVAEMVDEVGLA-DKVNIVVRALSGGM 699 (1833)
Q Consensus 629 ~----~~~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~--~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSgGq 699 (1833)
. +....|++|||++|++ .+++.+||.||+.+..... +.++++.++++.++++.+||. +..++.+++|||||
T Consensus 87 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~ 166 (331)
T PRK15079 87 GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQ 166 (331)
T ss_pred cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHH
Confidence 3 2334677899999998 5888999999998865543 366677788899999999995 46799999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCH
Q 000224 700 KRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSS 777 (1833)
Q Consensus 700 kqrl~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~--g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~ 777 (1833)
|||++|||||+.+|++|||||||+|||+.++++++++|+++++ |.|+|++|||++++..+||||++|.+|++++.|++
T Consensus 167 ~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~~ 246 (331)
T PRK15079 167 CQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTY 246 (331)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999853 89999999999999999999999999999999999
Q ss_pred HHHHhh
Q 000224 778 LFLKHQ 783 (1833)
Q Consensus 778 ~~Lk~~ 783 (1833)
.++.+.
T Consensus 247 ~~i~~~ 252 (331)
T PRK15079 247 DEVYHN 252 (331)
T ss_pred HHHHcC
Confidence 887644
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=402.80 Aligned_cols=218 Identities=32% Similarity=0.534 Sum_probs=195.5
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHH-hhcc
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDE-IRKG 637 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~-~r~~ 637 (1833)
++++||++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .... .++.
T Consensus 1 l~~~~l~~~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (236)
T cd03219 1 LEVRGLTKRFGG----LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLG 76 (236)
T ss_pred CeeeeeEEEECC----EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcC
Confidence 468999999952 469999999999999999999999999999999999999999999999998754 2222 3567
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCC----------CHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHH
Q 000224 638 LGVCPQYDILFPELTVREHLEMFAVLKGV----------KEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGI 707 (1833)
Q Consensus 638 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~----------~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~ 707 (1833)
+||+||++.+++.+||+||+.+.....+. ...+.++++.++++.+|+.+..++++++||||||||++|||
T Consensus 77 i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~ 156 (236)
T cd03219 77 IGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIAR 156 (236)
T ss_pred EEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHH
Confidence 99999999999999999999887654322 23445677899999999998889999999999999999999
Q ss_pred HHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 708 ALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 708 al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
||+.+|+++||||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|++++.|++.++.
T Consensus 157 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 157 ALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVR 231 (236)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence 9999999999999999999999999999999986 6899999999999999999999999999999999987764
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=412.56 Aligned_cols=221 Identities=31% Similarity=0.482 Sum_probs=198.7
Q ss_pred EEEEeeEEEecCCCC-cccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-----cHHH
Q 000224 560 IQIRKLHKVYATKRG-NCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-----DMDE 633 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~-~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-----~~~~ 633 (1833)
++++||+|.|++..+ .+.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. ....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 789999999964221 2469999999999999999999999999999999999999999999999998842 2445
Q ss_pred hhcceEEEccCC--CCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-cccccccCCCChhHHHHHHHHHHHh
Q 000224 634 IRKGLGVCPQYD--ILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA-DKVNIVVRALSGGMKRKLSLGIALI 710 (1833)
Q Consensus 634 ~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSgGqkqrl~lA~al~ 710 (1833)
.|+.+|||||++ .++ ..||+||+.+.....+.+.++.+++++++++.+||. +..++++.+|||||||||+|||||+
T Consensus 83 ~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~ 161 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLA 161 (290)
T ss_pred HHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 678899999986 455 469999999877666777777778899999999997 5679999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 711 GDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 711 ~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
.+|++|||||||+|||+.++++++++|++++ + |.|||++||+++++..+||||++|++|++++.|++.++.
T Consensus 162 ~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 162 MEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIF 234 (290)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999999985 3 899999999999999999999999999999999987764
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=399.30 Aligned_cols=211 Identities=31% Similarity=0.523 Sum_probs=188.4
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cH----HHh
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DM----DEI 634 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~----~~~ 634 (1833)
|+++||++.|++.++.+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +. ...
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 4689999999642111469999999999999999999999999999999999999999999999998753 11 124
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCc
Q 000224 635 RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSK 714 (1833)
Q Consensus 635 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~ 714 (1833)
++.+||+||++.+++.+||+||+.+....++......++++.++++.+||.+..++++++||||||||++|||||+.+|+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 160 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK 160 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCC
Confidence 56899999999999999999999987766666555566789999999999988899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEeeCCEE
Q 000224 715 VVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSL 771 (1833)
Q Consensus 715 vliLDEPtsgLD~~~r~~l~~~l~~~~~--g~tiil~tH~~~e~~~l~Dri~im~~G~l 771 (1833)
+|||||||+|||+.+++.++++|+++++ |+|||++||++++++ +|||+++|++|++
T Consensus 161 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 161 IILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 9999999999999999999999999853 899999999999998 8999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=403.09 Aligned_cols=219 Identities=26% Similarity=0.404 Sum_probs=196.0
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcce
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 638 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~i 638 (1833)
.++++||++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++.+
T Consensus 2 ~l~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~i 76 (239)
T cd03296 2 SIEVRNVSKRFGD----FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVP-VQERNV 76 (239)
T ss_pred EEEEEeEEEEECC----EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC-ccccce
Confidence 3789999999953 46999999999999999999999999999999999999999999999999875321 235679
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCc
Q 000224 639 GVCPQYDILFPELTVREHLEMFAVLKGV----KEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSK 714 (1833)
Q Consensus 639 g~~~Q~~~l~~~lTv~e~l~~~~~~~~~----~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~ 714 (1833)
||+||++.+++.+||.||+.+.....+. ...+.+++++++++.+||.+..++++.+|||||||||+|||||+.+|+
T Consensus 77 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 156 (239)
T cd03296 77 GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPK 156 (239)
T ss_pred EEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999887654433 334456678899999999988899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 715 VVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 715 vliLDEPtsgLD~~~r~~l~~~l~~~~-~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
+|||||||+|||+.+++.++++|++++ + |+|||++||+++++..+||||++|++|++++.|++.++.+
T Consensus 157 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 157 VLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 999999999999999999999999985 3 8999999999999999999999999999999999877643
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=401.17 Aligned_cols=217 Identities=32% Similarity=0.542 Sum_probs=196.5
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cH-HHhhcc
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DM-DEIRKG 637 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~-~~~r~~ 637 (1833)
++++||+|.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. +. ...++.
T Consensus 1 l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 76 (232)
T cd03218 1 LRAENLSKRYGK----RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLG 76 (232)
T ss_pred CeEEEEEEEeCC----EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhcc
Confidence 468999999953 469999999999999999999999999999999999999999999999998753 22 223567
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEE
Q 000224 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVI 717 (1833)
Q Consensus 638 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vli 717 (1833)
+||+||++.+++.+|++||+.+....++....+.+++++++++.+|+.+..++.+++||||||||++|||||+.+|++||
T Consensus 77 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 156 (232)
T cd03218 77 IGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLL 156 (232)
T ss_pred EEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999999987665565555566788999999999988999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q 000224 718 LDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFL 780 (1833)
Q Consensus 718 LDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~L 780 (1833)
|||||+|||+.+++.++++|++++ +|+|||++||+++++..+||||++|++|++++.|++.++
T Consensus 157 lDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 157 LDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 999999999999999999999986 589999999999999999999999999999999987665
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=395.68 Aligned_cols=213 Identities=31% Similarity=0.489 Sum_probs=191.1
Q ss_pred EEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccc
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1544 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~~~ 1544 (1833)
|+++|+++.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..... .+++
T Consensus 1 i~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~-~~~~ 73 (213)
T cd03301 1 VELENVTKRFGN------VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP-KDRD 73 (213)
T ss_pred CEEEeeEEEECC------eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc-ccce
Confidence 468999999953 469999999999999999999999999999999999999999999999998854222 2467
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000224 1545 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1624 (1833)
Q Consensus 1545 ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~vll 1624 (1833)
++|+||++.+++.+|++||+.+....++...++.++++.++++.+++.+..++++.+||||||||++||+||+.+|++||
T Consensus 74 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~lll 153 (213)
T cd03301 74 IAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFL 153 (213)
T ss_pred EEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999888889999999887666565555556678889999999988999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEec
Q 000224 1625 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1685 (1833)
Q Consensus 1625 LDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g 1685 (1833)
|||||+|||+.+++.+++.|++++++.| +|||++||+++++..+|||+++|++|++++.|
T Consensus 154 lDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 154 MDEPLSNLDAKLRVQMRAELKRLQQRLG-TTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999865444 58999999999999999999999999998875
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=397.86 Aligned_cols=213 Identities=32% Similarity=0.502 Sum_probs=192.6
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcceE
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 639 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 639 (1833)
++++||+|.|++..+.+.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .++.+|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~----~~~~i~ 76 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG----PGPDRG 76 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc----ccCcEE
Confidence 4689999999642212469999999999999999999999999999999999999999999999988752 357799
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEEe
Q 000224 640 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 719 (1833)
Q Consensus 640 ~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 719 (1833)
||||++.+++.+|++||+.+....++.+.+..+++++++++.+||.+..++++++||||||||++|||||+.+|+++|||
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLD 156 (220)
T cd03293 77 YVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLD 156 (220)
T ss_pred EEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 99999999998999999998776666665666778999999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEee--CCEEEeecC
Q 000224 720 EPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMA--NGSLKCCGS 776 (1833)
Q Consensus 720 EPtsgLD~~~r~~l~~~l~~~~--~g~tiil~tH~~~e~~~l~Dri~im~--~G~l~~~G~ 776 (1833)
|||+|||+.+++.++++|+++. .|+|||++||+++++..+|||+++|+ +|+++..++
T Consensus 157 EPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~ 217 (220)
T cd03293 157 EPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVE 217 (220)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEE
Confidence 9999999999999999999983 38999999999999999999999999 799987765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=414.57 Aligned_cols=231 Identities=23% Similarity=0.337 Sum_probs=202.3
Q ss_pred cceEEEEeEEEEcCCCcc-------ccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeC
Q 000224 1462 NAIIYLRNLRKVYPGGKR-------SDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDI 1534 (1833)
Q Consensus 1462 ~~~l~v~~l~k~y~~~~~-------~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i 1534 (1833)
+++|+++||+|.|+.+.. .+...+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 468999999999964210 0135699999999999999999999999999999999999999999999999998
Q ss_pred CCC-h---HHhccceEEEecCC--CCCCCCCHHHHHHHHHHHc--CCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChh
Q 000224 1535 RSD-P---KAARRLIGYCPQFD--ALLEYLTVQEHLELYARIK--GVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGG 1605 (1833)
Q Consensus 1535 ~~~-~---~~~~~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~~--g~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG 1605 (1833)
... . ...+++|||++|++ .+++.+|+.||+.+..... +.++++.++.+.++++.++|. +..++++++||||
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG 165 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGG 165 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHH
Confidence 642 2 23567899999997 6888999999998765443 355566677788999999995 5689999999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEec
Q 000224 1606 NKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1685 (1833)
Q Consensus 1606 ~kqrl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g 1685 (1833)
|||||+||+||+.+|++|||||||+|||+.+++.++++|+++.++.| .|||++|||++++..+||||++|.+|++++.|
T Consensus 166 ~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~-~til~iTHdl~~~~~~~dri~vl~~G~ive~g 244 (331)
T PRK15079 166 QCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMG-LSLIFIAHDLAVVKHISDRVLVMYLGHAVELG 244 (331)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 99999999999999999999999999999999999999999965444 68999999999999999999999999999999
Q ss_pred ChhHHHhh
Q 000224 1686 SPQHLKTR 1693 (1833)
Q Consensus 1686 ~~~~l~~~ 1693 (1833)
+++++.+.
T Consensus 245 ~~~~i~~~ 252 (331)
T PRK15079 245 TYDEVYHN 252 (331)
T ss_pred CHHHHHcC
Confidence 99988654
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=420.73 Aligned_cols=210 Identities=29% Similarity=0.451 Sum_probs=191.9
Q ss_pred CcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCc----cCCc-c---HHHhh-cceEEEccC
Q 000224 574 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGK----NITA-D---MDEIR-KGLGVCPQY 644 (1833)
Q Consensus 574 ~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~----~i~~-~---~~~~r-~~ig~~~Q~ 644 (1833)
+.+.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|. ++.. + ..+.| +++|||||+
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~ 114 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQK 114 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECC
Confidence 3467999999999999999999999999999999999999999999999996 4432 1 22333 689999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEEeCCCCC
Q 000224 645 DILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSG 724 (1833)
Q Consensus 645 ~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLDEPtsg 724 (1833)
+.+++.+||+||+.++....+.++.+.++++.++++.+||.+..++++.+||||||||++|||||+.+|+||||||||+|
T Consensus 115 ~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~ 194 (382)
T TIGR03415 115 FALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSA 194 (382)
T ss_pred CcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCcc
Confidence 99999999999999987777877777788999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q 000224 725 MDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 783 (1833)
Q Consensus 725 LD~~~r~~l~~~l~~~~~--g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~ 783 (1833)
|||.+++++++.|+++++ ++|||++|||++++..+||||++|++|+++..|+++++..+
T Consensus 195 LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 195 LDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 999999999999999853 89999999999999999999999999999999999888543
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=413.02 Aligned_cols=230 Identities=24% Similarity=0.379 Sum_probs=200.4
Q ss_pred CCCcceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-
Q 000224 1459 SVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD- 1537 (1833)
Q Consensus 1459 ~~~~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~- 1537 (1833)
..+.++|+++|+++.|++... ..+.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++...
T Consensus 16 ~~~~~~l~~~nl~~~y~~~~~-~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~ 94 (320)
T PRK13631 16 LSDDIILRVKNLYCVFDEKQE-NELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKK 94 (320)
T ss_pred CCCCceEEEEeEEEEeCCCCc-ccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccc
Confidence 344568999999999964210 124599999999999999999999999999999999999999999999999987532
Q ss_pred ----------------hHHhccceEEEecCC--CCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-cccCCC
Q 000224 1538 ----------------PKAARRLIGYCPQFD--ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-KHAKKP 1598 (1833)
Q Consensus 1538 ----------------~~~~~~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~-~~~~~~ 1598 (1833)
....+++||||+|++ .+++ .|++||+.+.....+.+.++..+++.++++.++|. +..++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~ 173 (320)
T PRK13631 95 NNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERS 173 (320)
T ss_pred ccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCC
Confidence 245678899999986 4665 59999998765444566666667788999999996 578999
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEEC
Q 000224 1599 SFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVG 1678 (1833)
Q Consensus 1599 ~~~LSgG~kqrl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~ 1678 (1833)
+.+|||||||||+|||||+.+|++|||||||+|||+.+++.+++.|+++++ +| +|||++|||++++..+||||++|++
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g-~TiiivtHd~~~~~~~adri~vl~~ 251 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NN-KTVFVITHTMEHVLEVADEVIVMDK 251 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CC-CEEEEEecCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999999863 44 6899999999999999999999999
Q ss_pred CEEEEecChhHHHh
Q 000224 1679 GQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1679 G~i~~~g~~~~l~~ 1692 (1833)
|++++.|+++++..
T Consensus 252 G~i~~~g~~~~~~~ 265 (320)
T PRK13631 252 GKILKTGTPYEIFT 265 (320)
T ss_pred CEEEEeCCHHHHhc
Confidence 99999999998754
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=396.22 Aligned_cols=211 Identities=27% Similarity=0.487 Sum_probs=192.2
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcceE
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 639 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 639 (1833)
|+++|+++.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ..++.+|
T Consensus 1 i~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~-~~~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN----VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLP-PKDRDIA 75 (213)
T ss_pred CEEEeeEEEECC----eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC-cccceEE
Confidence 468999999953 36999999999999999999999999999999999999999999999999875321 2246799
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEEe
Q 000224 640 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 719 (1833)
Q Consensus 640 ~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 719 (1833)
|+||++.+++.+|++||+.++....+...++.+++++++++.+|+.+..++++++||||||||++|||||+.+|+++|||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllD 155 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMD 155 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999999998766666666667788999999999998899999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeec
Q 000224 720 EPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 775 (1833)
Q Consensus 720 EPtsgLD~~~r~~l~~~l~~~~--~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G 775 (1833)
|||+|||+.+++.++++|++++ .|+|||++||+++++..+||||++|++|++++.|
T Consensus 156 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 156 EPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999985 3899999999999999999999999999998765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=407.23 Aligned_cols=221 Identities=27% Similarity=0.429 Sum_probs=196.7
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhc
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAAR 1542 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~~ 1542 (1833)
+|+++|++|.|++ .+.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .....+
T Consensus 4 ~l~~~~l~~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 78 (274)
T PRK13647 4 IIEVEDLHFRYKD-----GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVR 78 (274)
T ss_pred eEEEEEEEEEeCC-----CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHH
Confidence 6899999999952 2459999999999999999999999999999999999999999999999999864 344567
Q ss_pred cceEEEecCCC-CCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCC
Q 000224 1543 RLIGYCPQFDA-LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1621 (1833)
Q Consensus 1543 ~~ig~~pQ~~~-l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~ 1621 (1833)
++|||+||++. .+..+|++||+.+.....+.+..+.++++.++++.++|.+..++++.+||||||||++||+||+.+|+
T Consensus 79 ~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~ 158 (274)
T PRK13647 79 SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPD 158 (274)
T ss_pred hhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 78999999962 34468999999876555566555566778899999999988999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHH
Q 000224 1622 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1691 (1833)
Q Consensus 1622 vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~ 1691 (1833)
+|||||||+|||+.+++.++++|+++++ +| +|||++||+++++.++||||++|++|++++.|+++++.
T Consensus 159 llllDEPt~~LD~~~~~~l~~~l~~~~~-~g-~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 159 VIVLDEPMAYLDPRGQETLMEILDRLHN-QG-KTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 9999999999999999999999999864 44 68999999999999999999999999999999987543
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=399.47 Aligned_cols=221 Identities=30% Similarity=0.480 Sum_probs=199.7
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcceE
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 639 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 639 (1833)
++++|++++|++ +.+++|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.......++.++
T Consensus 2 l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA----RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLG 77 (236)
T ss_pred EEEEeeEEEECC----EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEE
Confidence 789999999953 4699999999999999999999999999999999999999999999999987543233446899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEEe
Q 000224 640 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 719 (1833)
Q Consensus 640 ~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 719 (1833)
|+||++.+++.+|++||+.+....++.+..+.++++.++++.+||.+..++.+.+||||||||++|||||+.+|+++|||
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 157 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLD 157 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999988889999999988776666665566778899999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhC
Q 000224 720 EPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 785 (1833)
Q Consensus 720 EPtsgLD~~~r~~l~~~l~~~~--~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~~g 785 (1833)
|||+|||+.+++.+++.|++++ +|+|||++||+++++.. |||+++|++|++++.|++.++.+.++
T Consensus 158 EP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~ 224 (236)
T TIGR03864 158 EPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLADGAAAELRGALG 224 (236)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEEeCCHHHHHHHcC
Confidence 9999999999999999999985 48999999999999985 99999999999999999988876543
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=409.14 Aligned_cols=225 Identities=26% Similarity=0.445 Sum_probs=199.0
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-----Ch
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-----DP 1538 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-----~~ 1538 (1833)
+|+++|+++.|+++.. ..+.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++.. ..
T Consensus 1 mi~~~~v~~~y~~~~~-~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 79 (288)
T PRK13643 1 MIKFEKVNYTYQPNSP-FASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEI 79 (288)
T ss_pred CEEEEEEEEEeCCCCc-ccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccH
Confidence 4789999999964211 12359999999999999999999999999999999999999999999999999852 23
Q ss_pred HHhccceEEEecCC--CCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHHHHHHH
Q 000224 1539 KAARRLIGYCPQFD--ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIA 1615 (1833)
Q Consensus 1539 ~~~~~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~kqrl~lA~a 1615 (1833)
...++++||++|++ .+++ .|+.||+.+.....+.+..+.++++.++++.++|. +..++++.+||||||||++||+|
T Consensus 80 ~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~a 158 (288)
T PRK13643 80 KPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGI 158 (288)
T ss_pred HHHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHH
Confidence 45678899999986 5665 69999999876666776666777889999999996 57899999999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1616 MIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1616 l~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
|+.+|++|||||||+|||+.+++.+++.|+++++ +| .|||++|||++++..+||||++|++|++++.|+++++..
T Consensus 159 L~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g-~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 159 LAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SG-QTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred HHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CC-CEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 9999999999999999999999999999999864 44 689999999999999999999999999999999998864
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=408.04 Aligned_cols=220 Identities=31% Similarity=0.433 Sum_probs=195.4
Q ss_pred EEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-hHH----
Q 000224 1466 YLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-PKA---- 1540 (1833)
Q Consensus 1466 ~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~~---- 1540 (1833)
.++|++|.|+ ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...
T Consensus 26 ~~~~~~~~~~------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~ 99 (269)
T cd03294 26 SKEEILKKTG------QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99 (269)
T ss_pred hhhhhhhhcC------CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhh
Confidence 4668888885 35689999999999999999999999999999999999999999999999988542 211
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCC
Q 000224 1541 ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDP 1620 (1833)
Q Consensus 1541 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p 1620 (1833)
.++++||+||++.+++.+|++||+.+.....+.......+++.++++.++|.+..++++.+|||||||||+||+||+.+|
T Consensus 100 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p 179 (269)
T cd03294 100 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDP 179 (269)
T ss_pred hcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 24579999999999988999999988765555554445567888999999998899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1621 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1621 ~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
++|||||||+|||+.+++.+++.|++++++.| +|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 180 ~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g-~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 180 DILLMDEAFSALDPLIRREMQDELLRLQAELQ-KTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999864434 589999999999999999999999999999999988765
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=410.07 Aligned_cols=222 Identities=26% Similarity=0.410 Sum_probs=199.5
Q ss_pred eEEEEeeEEEecCCC-CcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-----cHH
Q 000224 559 CIQIRKLHKVYATKR-GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-----DMD 632 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~-~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-----~~~ 632 (1833)
.++++||+|.|+++. ..+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 388999999996421 12469999999999999999999999999999999999999999999999998843 234
Q ss_pred HhhcceEEEccCC--CCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-cccccccCCCChhHHHHHHHHHHH
Q 000224 633 EIRKGLGVCPQYD--ILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA-DKVNIVVRALSGGMKRKLSLGIAL 709 (1833)
Q Consensus 633 ~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSgGqkqrl~lA~al 709 (1833)
..|+.||||||++ .+++ .||.||+.+.....+.+.++.++++.++++.+||. +..++.+.+||||||||++|||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL 160 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSIL 160 (286)
T ss_pred HHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 6788999999986 4665 59999999877666777777888899999999997 678899999999999999999999
Q ss_pred hCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 710 IGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 710 ~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~--~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
+.+|++|||||||+|||+.++++++++|++++ +|+|||++||+++++..+||||++|++|++++.|++.++.
T Consensus 161 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 161 AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999984 4899999999999999999999999999999999987764
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=400.13 Aligned_cols=220 Identities=34% Similarity=0.534 Sum_probs=194.5
Q ss_pred EEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-hHH-hc
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-PKA-AR 1542 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~~-~~ 1542 (1833)
++++|+++.|++ +.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ... .+
T Consensus 1 l~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (236)
T cd03219 1 LEVRGLTKRFGG------LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIAR 74 (236)
T ss_pred CeeeeeEEEECC------EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHh
Confidence 468999999952 4599999999999999999999999999999999999999999999999988653 222 35
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHHHHcCC----------ChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHH
Q 000224 1543 RLIGYCPQFDALLEYLTVQEHLELYARIKGV----------AEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSV 1612 (1833)
Q Consensus 1543 ~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~----------~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~l 1612 (1833)
+.+||+||++.+++.+|++||+.+.....+. ...+..+.+.++++.+++.+..++++++||||||||++|
T Consensus 75 ~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 154 (236)
T cd03219 75 LGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEI 154 (236)
T ss_pred cCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHH
Confidence 6799999999999999999999876544322 123345567889999999988899999999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1613 AIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1613 A~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
|+||+.+|++|||||||+|||+.+++.+++.|+++++ +| +|||++||++++++.+|||+++|++|++++.|+++++.+
T Consensus 155 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 155 ARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RG-ITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 9999999999999999999999999999999999864 44 589999999999999999999999999999999988754
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=398.99 Aligned_cols=219 Identities=34% Similarity=0.558 Sum_probs=195.4
Q ss_pred EEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-hHH-hc
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-PKA-AR 1542 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~~-~~ 1542 (1833)
++++|++|.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++... ... .+
T Consensus 1 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 74 (232)
T cd03218 1 LRAENLSKRYGK------RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRAR 74 (232)
T ss_pred CeEEEEEEEeCC------EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHh
Confidence 468999999953 4599999999999999999999999999999999999999999999999987542 222 34
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCE
Q 000224 1543 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPI 1622 (1833)
Q Consensus 1543 ~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~v 1622 (1833)
+.+||+||++.+++.+|++||+.+....++....+..+.++++++.+++.+..++++.+||||||||++||+||+.+|++
T Consensus 75 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 154 (232)
T cd03218 75 LGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKF 154 (232)
T ss_pred ccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 67999999999999999999998866555554444556778899999999889999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHH
Q 000224 1623 VILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1691 (1833)
Q Consensus 1623 llLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~ 1691 (1833)
|||||||+|||+.+++.+++.|+++++ +| +|||++||+++++..+|||+++|++|++++.|+++++.
T Consensus 155 lllDEPt~~LD~~~~~~~~~~l~~~~~-~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 155 LLLDEPFAGVDPIAVQDIQKIIKILKD-RG-IGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 999999999999999999999999864 44 58999999999999999999999999999999988764
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=400.35 Aligned_cols=222 Identities=35% Similarity=0.577 Sum_probs=198.0
Q ss_pred EEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhcc
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARR 1543 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~~~ 1543 (1833)
++++|++++|++ .+.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .....++
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (242)
T cd03295 1 IEFENVTKRYGG-----GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRR 75 (242)
T ss_pred CEEEEEEEEeCC-----cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhc
Confidence 468999999963 1459999999999999999999999999999999999999999999999998864 3445577
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCcc--ccCCCCCCCChhHHHHHHHHHHHhcCCC
Q 000224 1544 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK--HAKKPSFTLSGGNKRKLSVAIAMIGDPP 1621 (1833)
Q Consensus 1544 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~LSgG~kqrl~lA~al~~~p~ 1621 (1833)
.+||+||++.+++.+|++||+.+.....+.......+.+.++++.+++.+ ..++++.+|||||||||+||+||+.+|+
T Consensus 76 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 155 (242)
T cd03295 76 KIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPP 155 (242)
T ss_pred ceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 89999999999988999999988766655554445567889999999985 7899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1622 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1622 vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
+|||||||+|||+.+++.+++.|++++++.| +|||++||++++++.+||||++|++|++++.|+++++.+
T Consensus 156 llllDEPt~~LD~~~~~~l~~~L~~~~~~~g-~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 156 LLLMDEPFGALDPITRDQLQEEFKRLQQELG-KTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHHcC-CEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999999999999999999864334 689999999999999999999999999999999888754
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=400.88 Aligned_cols=222 Identities=30% Similarity=0.482 Sum_probs=193.9
Q ss_pred EEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC----hHH
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD----PKA 1540 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~----~~~ 1540 (1833)
++++||++.|++ ++.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++... ...
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (241)
T cd03256 1 IEVENLSKTYPN-----GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQ 75 (241)
T ss_pred CEEeeEEEecCC-----ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHH
Confidence 468999999963 14599999999999999999999999999999999999999999999999988642 234
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHH--------HcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHH
Q 000224 1541 ARRLIGYCPQFDALLEYLTVQEHLELYAR--------IKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSV 1612 (1833)
Q Consensus 1541 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~--------~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~l 1612 (1833)
.++.+||+||++.+++.+|++||+.+... +.+.......+++.++++.+++.+..++++.+|||||||||+|
T Consensus 76 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 155 (241)
T cd03256 76 LRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAI 155 (241)
T ss_pred HHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHH
Confidence 56789999999999988999999976421 1122223344567889999999888899999999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1613 AIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1613 A~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
|+||+.+|++|||||||+|||+.+++.+++.|++++++.| +|||++||++++++.+|||+++|++|++++.|+++++.+
T Consensus 156 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 234 (241)
T cd03256 156 ARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEG-ITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELTD 234 (241)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhhH
Confidence 9999999999999999999999999999999999864444 589999999999999999999999999999999888643
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-42 Score=410.23 Aligned_cols=225 Identities=24% Similarity=0.394 Sum_probs=198.4
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-------
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS------- 1536 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~------- 1536 (1833)
+|+++|++++|+++.. ....+++|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++..
T Consensus 2 ~i~~~~l~~~y~~~~~-~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (305)
T PRK13651 2 QIKVKNIVKIFNKKLP-TELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEK 80 (305)
T ss_pred EEEEEEEEEEECCCCC-ccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccc
Confidence 4889999999964211 12369999999999999999999999999999999999999999999999876521
Q ss_pred ------------------ChHHhccceEEEecCC--CCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-ccc
Q 000224 1537 ------------------DPKAARRLIGYCPQFD--ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-KHA 1595 (1833)
Q Consensus 1537 ------------------~~~~~~~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~-~~~ 1595 (1833)
.....+++|||+||++ .++ ..||+||+.+.....+.+.++..+++.++++.+||. +..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~ 159 (305)
T PRK13651 81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYL 159 (305)
T ss_pred cccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhh
Confidence 2245678899999985 444 479999999876666777777778889999999996 678
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEE
Q 000224 1596 KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGI 1675 (1833)
Q Consensus 1596 ~~~~~~LSgG~kqrl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~i 1675 (1833)
++++.+||||||||++||+||+.+|++|||||||+|||+.+++.+++.|++++ ++| +|||++|||++++..+||||++
T Consensus 160 ~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~-~~g-~tiiivtHd~~~~~~~adrv~v 237 (305)
T PRK13651 160 QRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLN-KQG-KTIILVTHDLDNVLEWTKRTIF 237 (305)
T ss_pred hCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCC-CEEEEEeeCHHHHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999999999986 444 6899999999999999999999
Q ss_pred EECCEEEEecChhHHHh
Q 000224 1676 MVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1676 m~~G~i~~~g~~~~l~~ 1692 (1833)
|++|++++.|+++++.+
T Consensus 238 l~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 238 FKDGKIIKDGDTYDILS 254 (305)
T ss_pred EECCEEEEECCHHHHhc
Confidence 99999999999998764
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=400.87 Aligned_cols=219 Identities=32% Similarity=0.519 Sum_probs=198.5
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHHhhcce
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGL 638 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~i 638 (1833)
++++||+++|++. +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +....++.+
T Consensus 1 l~~~~l~~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 77 (242)
T cd03295 1 IEFENVTKRYGGG---KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKI 77 (242)
T ss_pred CEEEEEEEEeCCc---ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcce
Confidence 4689999999631 459999999999999999999999999999999999999999999999998753 344567789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCc--ccccccCCCChhHHHHHHHHHHHhCCCcEE
Q 000224 639 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLAD--KVNIVVRALSGGMKRKLSLGIALIGDSKVV 716 (1833)
Q Consensus 639 g~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~--~~~~~~~~LSgGqkqrl~lA~al~~~p~vl 716 (1833)
||+||++.+++.+|++||+.++....+.+.++.++++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|++|
T Consensus 78 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 157 (242)
T cd03295 78 GYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLL 157 (242)
T ss_pred EEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999998766666655566778999999999986 779999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 717 ILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 717 iLDEPtsgLD~~~r~~l~~~l~~~~-~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
||||||+|||+.+++.+++.|++++ + |+|||++||+++++..+||||++|++|++++.|++..+.
T Consensus 158 llDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 158 LMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999985 3 899999999999999999999999999999999887764
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-42 Score=408.11 Aligned_cols=226 Identities=26% Similarity=0.434 Sum_probs=198.8
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-----h
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-----P 1538 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~-----~ 1538 (1833)
.++++||+|.|+++.. ..+.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... .
T Consensus 2 ~l~~~~l~~~y~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (286)
T PRK13646 2 TIRFDNVSYTYQKGTP-YEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYI 80 (286)
T ss_pred EEEEEEEEEEECCCCc-cccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchH
Confidence 3789999999963210 124699999999999999999999999999999999999999999999999998531 2
Q ss_pred HHhccceEEEecCC--CCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHHHHHHH
Q 000224 1539 KAARRLIGYCPQFD--ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIA 1615 (1833)
Q Consensus 1539 ~~~~~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~kqrl~lA~a 1615 (1833)
...+++||||||++ .+++ .|+.||+.+.....+.+..+..+++.++++.+||. +..++++.+||||||||++||+|
T Consensus 81 ~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lara 159 (286)
T PRK13646 81 RPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSI 159 (286)
T ss_pred HHHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence 45678899999986 4555 59999998876555666666777888999999996 67889999999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1616 MIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1616 l~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
|+.+|++|||||||+|||+.+++.++++|++++++.| +|||++||+++++..+||||++|++|++++.|+++++.+
T Consensus 160 L~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g-~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 160 LAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDEN-KTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCC-CEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999864444 699999999999999999999999999999999988764
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=392.93 Aligned_cols=209 Identities=33% Similarity=0.596 Sum_probs=191.9
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcceE
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 639 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 639 (1833)
++++|+++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ..++.+|
T Consensus 1 l~~~~l~~~~~~----~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~---~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR----VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI---AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC----EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH---HHHccEE
Confidence 468999999952 469999999999999999999999999999999999999999999999988753 3567899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEEe
Q 000224 640 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 719 (1833)
Q Consensus 640 ~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 719 (1833)
|+||++.+++.+|++||+.+.....+.+..+.++++.++++.+|+.+..++++.+||||||||++||+||+.+|+++|||
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllD 153 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILD 153 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999999998776666666667788999999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeec
Q 000224 720 EPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 775 (1833)
Q Consensus 720 EPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G 775 (1833)
|||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|++.+.|
T Consensus 154 EP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 154 EPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999999985 5899999999999999999999999999997654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-42 Score=406.95 Aligned_cols=225 Identities=28% Similarity=0.414 Sum_probs=200.5
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhc
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAAR 1542 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~~ 1542 (1833)
+++++|+++.|++. +.+.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.. .....+
T Consensus 4 ~l~~~~l~~~~~~~---~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (279)
T PRK13650 4 IIEVKNLTFKYKED---QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIR 80 (279)
T ss_pred eEEEEeEEEEcCCC---CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHH
Confidence 68999999999632 12459999999999999999999999999999999999999999999999999864 344567
Q ss_pred cceEEEecCC-CCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCC
Q 000224 1543 RLIGYCPQFD-ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1621 (1833)
Q Consensus 1543 ~~ig~~pQ~~-~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~ 1621 (1833)
+++||+||++ .+++.+|++||+.+.....+.+.++..+++.++++.++|.+..++++.+||||||||++||+||+.+|+
T Consensus 81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 160 (279)
T PRK13650 81 HKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPK 160 (279)
T ss_pred hhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 7899999997 366778999999876655666666667788999999999988999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000224 1622 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693 (1833)
Q Consensus 1622 vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~ 1693 (1833)
+|||||||+|||+.+++.+++.|++++++.| +|||++||++++++ .||||++|++|+++..|+++++..+
T Consensus 161 lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g-~tilivtH~~~~~~-~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 161 IIILDEATSMLDPEGRLELIKTIKGIRDDYQ-MTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHHcC
Confidence 9999999999999999999999999965434 68999999999995 7999999999999999999887643
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-42 Score=400.75 Aligned_cols=218 Identities=30% Similarity=0.476 Sum_probs=197.7
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCC-----cceEEEcCccCCc---c
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPT-----TGDALVFGKNITA---D 630 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~-----~G~i~i~g~~i~~---~ 630 (1833)
+++++||++.|++ ..+++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. .
T Consensus 1 ~l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~ 76 (247)
T TIGR00972 1 AIEIENLNLFYGE----KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76 (247)
T ss_pred CEEEEEEEEEECC----eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccc
Confidence 3789999999953 35999999999999999999999999999999999999998 9999999998853 2
Q ss_pred HHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHHH
Q 000224 631 MDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKG-VKEELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLSL 705 (1833)
Q Consensus 631 ~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~-~~~~~~~~~v~~~l~~~~L~----~~~~~~~~~LSgGqkqrl~l 705 (1833)
....++.+||+||++.+++ +|++||+.+.....+ .+.++.++++.++++.+||. +..++++++||||||||++|
T Consensus 77 ~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~l 155 (247)
T TIGR00972 77 VVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCI 155 (247)
T ss_pred hHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHH
Confidence 3456788999999999998 999999998766555 34455667889999999998 67889999999999999999
Q ss_pred HHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 706 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 706 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++|++++.|++.++.
T Consensus 156 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 156 ARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999876799999999999999999999999999999999987764
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=397.12 Aligned_cols=218 Identities=28% Similarity=0.462 Sum_probs=193.8
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHH---H
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMD---E 633 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~---~ 633 (1833)
+.++++||++.|+.+...+.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. +.. .
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 469999999999643212469999999999999999999999999999999999999999999999998853 211 2
Q ss_pred h-hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCC
Q 000224 634 I-RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGD 712 (1833)
Q Consensus 634 ~-r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~ 712 (1833)
. ++.+||+||++.+++.+|++||+.+.....+...++.++++.++++.+||.+..++.+.+||||||||++|||||+.+
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~ 163 (233)
T PRK11629 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNN 163 (233)
T ss_pred HHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 3 367999999999999999999999876555555566677899999999999888999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecC
Q 000224 713 SKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776 (1833)
Q Consensus 713 p~vliLDEPtsgLD~~~r~~l~~~l~~~~--~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~ 776 (1833)
|++|||||||+|||+.+++.++++|++++ +|+|||++||++++++. +||+++|++|++++.|+
T Consensus 164 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~-~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 164 PRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKR-MSRQLEMRDGRLTAELS 228 (233)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh-hCEEEEEECCEEEEEec
Confidence 99999999999999999999999999984 48999999999999987 57999999999998775
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=398.98 Aligned_cols=215 Identities=34% Similarity=0.496 Sum_probs=191.8
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCC-----CCCcceEEEcCccCCc-c--H
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLI-----PPTTGDALVFGKNITA-D--M 631 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~-----~p~~G~i~i~g~~i~~-~--~ 631 (1833)
|+++||++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|++ +|++|+|.++|.++.. + .
T Consensus 1 i~~~~l~~~~~~----~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 76 (227)
T cd03260 1 IELRDLNVYYGD----KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDV 76 (227)
T ss_pred CEEEEEEEEcCC----ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHH
Confidence 468999999953 36999999999999999999999999999999999999 9999999999998753 2 3
Q ss_pred HHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHcCCCcccccc--cCCCChhHHHHHHHHHH
Q 000224 632 DEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKE-ELLESVVAEMVDEVGLADKVNIV--VRALSGGMKRKLSLGIA 708 (1833)
Q Consensus 632 ~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~-~~~~~~v~~~l~~~~L~~~~~~~--~~~LSgGqkqrl~lA~a 708 (1833)
...++++||+||++.++ .+||+||+.+.....+... ++.++++.++++.+|+.+..+++ +.+||||||||++||||
T Consensus 77 ~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~a 155 (227)
T cd03260 77 LELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARA 155 (227)
T ss_pred HHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHH
Confidence 45678899999999888 7899999988766555433 33567889999999998877776 59999999999999999
Q ss_pred HhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHH
Q 000224 709 LIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLF 779 (1833)
Q Consensus 709 l~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~ 779 (1833)
|+.+|++|||||||+|||+.+++.++++|+++++.+|||++||+++++..+|||+++|++|++++.|++.+
T Consensus 156 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 156 LANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 99999999999999999999999999999998645999999999999999999999999999999887643
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=406.85 Aligned_cols=219 Identities=28% Similarity=0.419 Sum_probs=198.1
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHHhhcc
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 637 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~ 637 (1833)
.++++||+|.|++ .+.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ...+.++.
T Consensus 4 ~l~~~~l~~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 80 (274)
T PRK13647 4 IIEVEDLHFRYKD---GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSK 80 (274)
T ss_pred eEEEEEEEEEeCC---CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhh
Confidence 5899999999953 2359999999999999999999999999999999999999999999999998853 34556778
Q ss_pred eEEEccCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEE
Q 000224 638 LGVCPQYDI-LFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVV 716 (1833)
Q Consensus 638 ig~~~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vl 716 (1833)
+||+||++. .+...||.||+.+.....+.+..+.++++.++++.+||.+..++++.+||||||||++|||||+.+|++|
T Consensus 81 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~ll 160 (274)
T PRK13647 81 VGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVI 160 (274)
T ss_pred EEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999973 3446799999998766666766667788999999999998899999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q 000224 717 ILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFL 780 (1833)
Q Consensus 717 iLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~L 780 (1833)
||||||+|||+.++++++++|++++ +|+|||++||+++++..+||||++|++|++++.|+++.+
T Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 161 VLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999985 589999999999999999999999999999999998654
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=377.23 Aligned_cols=220 Identities=31% Similarity=0.500 Sum_probs=197.3
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc--cHHHhh
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA--DMDEIR 635 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~--~~~~~r 635 (1833)
..++++||+-.| +...||+||||++++|||++|+|+||||||||++.|+|+.+|.+|+|.++|.|++. .-+..|
T Consensus 2 ~mL~v~~l~~~Y----G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r 77 (237)
T COG0410 2 PMLEVENLSAGY----GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERAR 77 (237)
T ss_pred CceeEEeEeecc----cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHh
Confidence 358999999999 45689999999999999999999999999999999999999999999999999974 345678
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-CCcccccccCCCChhHHHHHHHHHHHhCCCc
Q 000224 636 KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVG-LADKVNIVVRALSGGMKRKLSLGIALIGDSK 714 (1833)
Q Consensus 636 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~-L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~ 714 (1833)
..|+||||...+|+.|||+|||..++....- +...+..++++.+.+- |.+.++++.++|||||||.|+|||||+.+|+
T Consensus 78 ~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~-~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pk 156 (237)
T COG0410 78 LGIAYVPEGRRIFPRLTVEENLLLGAYARRD-KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPK 156 (237)
T ss_pred CCeEeCcccccchhhCcHHHHHhhhhhcccc-cccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999987654322 1112222677777774 6788899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 715 VVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 715 vliLDEPtsgLD~~~r~~l~~~l~~~~~--g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
+|+|||||.||-|.-.+++.+.|+++++ |.||+++.++...|..++||.++|++|+++..|++++|.+
T Consensus 157 lLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~ 226 (237)
T COG0410 157 LLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226 (237)
T ss_pred EEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhc
Confidence 9999999999999999999999999973 7899999999999999999999999999999999988864
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-42 Score=395.60 Aligned_cols=220 Identities=26% Similarity=0.448 Sum_probs=192.4
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCCh-H--
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDP-K-- 1539 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~-~-- 1539 (1833)
++++++|++|.|+++. ..+.+++++||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++.... .
T Consensus 4 ~~l~~~~l~~~~~~~~--~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~ 81 (233)
T PRK11629 4 ILLQCDNLCKRYQEGS--VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAK 81 (233)
T ss_pred ceEEEEeEEEEcCCCC--cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHH
Confidence 5799999999996421 1146999999999999999999999999999999999999999999999999986532 1
Q ss_pred -Hh-ccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHh
Q 000224 1540 -AA-RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMI 1617 (1833)
Q Consensus 1540 -~~-~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~ 1617 (1833)
.. ++.+||+||++.+++.+|++||+.+.....+....+.++++.++++.+||.+..++++.+||||||||++||+||+
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~ 161 (233)
T PRK11629 82 AELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALV 161 (233)
T ss_pred HHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHh
Confidence 12 3679999999989999999999988655555554455667889999999998889999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecC
Q 000224 1618 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS 1686 (1833)
Q Consensus 1618 ~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~ 1686 (1833)
.+|++|||||||+|||+.+++.+++.|+++++++| +|||++||++++++.+ ||+++|++|++++.++
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g-~tvii~sH~~~~~~~~-~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 162 NNPRLVLADEPTGNLDARNADSIFQLLGELNRLQG-TAFLVVTHDLQLAKRM-SRQLEMRDGRLTAELS 228 (233)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHhh-CEEEEEECCEEEEEec
Confidence 99999999999999999999999999999864444 6899999999999875 6999999999998775
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=375.62 Aligned_cols=223 Identities=30% Similarity=0.429 Sum_probs=198.2
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCCh--HH
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDP--KA 1540 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~--~~ 1540 (1833)
++++++||+..|+ ...||++|||++++|||++|+|+||||||||+|.|+|+.+|.+|+|.++|+|+...+ ..
T Consensus 2 ~mL~v~~l~~~YG------~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r 75 (237)
T COG0410 2 PMLEVENLSAGYG------KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHER 75 (237)
T ss_pred CceeEEeEeeccc------ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHH
Confidence 4799999999996 467999999999999999999999999999999999999999999999999998743 45
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcC-CccccCCCCCCCChhHHHHHHHHHHHhcC
Q 000224 1541 ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFD-LLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1619 (1833)
Q Consensus 1541 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~-L~~~~~~~~~~LSgG~kqrl~lA~al~~~ 1619 (1833)
.|..|+||||...+|+.|||+|||.+.+....- +...+...++..+.|- |.+..+++.++|||||||-|+|||||+.+
T Consensus 76 ~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~-~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 76 ARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD-KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred HhCCeEeCcccccchhhCcHHHHHhhhhhcccc-cccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 788899999999999999999999987654322 1112222566777765 67889999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000224 1620 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693 (1833)
Q Consensus 1620 p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~ 1693 (1833)
|++|+|||||.||-|.-.+++.+.|++++++.| .||+++-++...+.+++||.++|++|+++..|+.++|.+.
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g-~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGG-MTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCC-cEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 999999999999999999999999999975544 7999999999999999999999999999999999998754
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-42 Score=407.95 Aligned_cols=222 Identities=27% Similarity=0.459 Sum_probs=198.2
Q ss_pred eEEEEeeEEEecCCCC-cccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-----cHH
Q 000224 559 CIQIRKLHKVYATKRG-NCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-----DMD 632 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~-~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-----~~~ 632 (1833)
.|+++||+|.|++... .+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ...
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 4789999999963211 2469999999999999999999999999999999999999999999999998743 234
Q ss_pred HhhcceEEEccCC--CCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-cccccccCCCChhHHHHHHHHHHH
Q 000224 633 EIRKGLGVCPQYD--ILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA-DKVNIVVRALSGGMKRKLSLGIAL 709 (1833)
Q Consensus 633 ~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSgGqkqrl~lA~al 709 (1833)
..++.+||+||++ .++ .+||.||+.+.....+...++.+++++++++.+||. +..++++++||||||||++|||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral 160 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVM 160 (287)
T ss_pred HHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHH
Confidence 5677899999997 355 579999998876655666667778899999999997 678999999999999999999999
Q ss_pred hCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 710 IGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 710 ~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
+.+|++|||||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|+++..|++.++.
T Consensus 161 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 161 AYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIF 233 (287)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999985 5899999999999999999999999999999999987764
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-42 Score=404.88 Aligned_cols=224 Identities=25% Similarity=0.419 Sum_probs=198.8
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHh
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAA 1541 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 1541 (1833)
.+++++|++|+|++ .+.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++.. .....
T Consensus 2 ~~l~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 76 (277)
T PRK13652 2 HLIETRDLCYSYSG-----SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREV 76 (277)
T ss_pred ceEEEEEEEEEeCC-----CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 36899999999953 2359999999999999999999999999999999999999999999999998864 34456
Q ss_pred ccceEEEecCCC-CCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCC
Q 000224 1542 RRLIGYCPQFDA-LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDP 1620 (1833)
Q Consensus 1542 ~~~ig~~pQ~~~-l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p 1620 (1833)
++++||+||++. .+...|+.||+.+.....+.......+.+.++++.++|.+..++++.+||||||||++||+||+.+|
T Consensus 77 ~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p 156 (277)
T PRK13652 77 RKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEP 156 (277)
T ss_pred HhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 778999999963 2335799999987655455655556667889999999998899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1621 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1621 ~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
++|||||||+|||+.+++.+++.|++++++.| +|||++||+++++.++|||+++|++|++++.|+++++.+
T Consensus 157 ~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g-~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 157 QVLVLDEPTAGLDPQGVKELIDFLNDLPETYG-MTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 99999999999999999999999999865434 689999999999999999999999999999999998864
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-42 Score=406.32 Aligned_cols=224 Identities=24% Similarity=0.390 Sum_probs=199.1
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC---ChH
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS---DPK 1539 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~---~~~ 1539 (1833)
++|+++|++++|++ ++.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ...
T Consensus 4 ~~l~~~~l~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~ 78 (283)
T PRK13636 4 YILKVEELNYNYSD-----GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLM 78 (283)
T ss_pred ceEEEEeEEEEeCC-----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHH
Confidence 47999999999952 2459999999999999999999999999999999999999999999999999842 234
Q ss_pred HhccceEEEecCCC-CCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhc
Q 000224 1540 AARRLIGYCPQFDA-LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIG 1618 (1833)
Q Consensus 1540 ~~~~~ig~~pQ~~~-l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~ 1618 (1833)
..++.+||+||++. .+...|++||+.+.....+.+..+..+++.++++.++|.+..++++.+||||||||++||+||+.
T Consensus 79 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~ 158 (283)
T PRK13636 79 KLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVM 158 (283)
T ss_pred HHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 56788999999863 23357999999876555566666566778899999999989999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1619 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1619 ~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
+|++|||||||+|||+.+++.++++|++++++.| +|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 159 ~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g-~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 159 EPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELG-LTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC-CEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999965434 689999999999999999999999999999999988764
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-42 Score=411.99 Aligned_cols=223 Identities=26% Similarity=0.431 Sum_probs=199.7
Q ss_pred ceEEEEeeEEEecCCC-CcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-------
Q 000224 558 RCIQIRKLHKVYATKR-GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA------- 629 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~-~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~------- 629 (1833)
..|+++||++.|++.. ..+.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++..
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 4699999999996421 12469999999999999999999999999999999999999999999999988743
Q ss_pred ----------cHHHhhcceEEEccCC--CCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-cccccccCCCC
Q 000224 630 ----------DMDEIRKGLGVCPQYD--ILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA-DKVNIVVRALS 696 (1833)
Q Consensus 630 ----------~~~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LS 696 (1833)
.....|+.+|||+|++ .+++ .||+||+.++....+.+.++..+++.++++.+||. +..++.+.+||
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LS 178 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLS 178 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCC
Confidence 2345678999999997 4675 49999998876555667777778899999999997 57899999999
Q ss_pred hhHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeec
Q 000224 697 GGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 775 (1833)
Q Consensus 697 gGqkqrl~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G 775 (1833)
||||||++|||||+.+|++|||||||+|||+.++++++++|++++ +|+|||++||+++++..+||||++|++|++++.|
T Consensus 179 gGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~g 258 (320)
T PRK13631 179 GGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTG 258 (320)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999885 5899999999999999999999999999999999
Q ss_pred CHHHHH
Q 000224 776 SSLFLK 781 (1833)
Q Consensus 776 ~~~~Lk 781 (1833)
++.++.
T Consensus 259 ~~~~~~ 264 (320)
T PRK13631 259 TPYEIF 264 (320)
T ss_pred CHHHHh
Confidence 998764
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-42 Score=405.64 Aligned_cols=224 Identities=28% Similarity=0.428 Sum_probs=199.8
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-hHHh
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-PKAA 1541 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~~~ 1541 (1833)
++++++||++.|++. .+.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++... ....
T Consensus 4 ~~l~~~~l~~~~~~~----~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~ 79 (279)
T PRK13635 4 EIIRVEHISFRYPDA----ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDV 79 (279)
T ss_pred ceEEEEEEEEEeCCC----CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHH
Confidence 479999999999631 24599999999999999999999999999999999999999999999999998653 3456
Q ss_pred ccceEEEecCC-CCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCC
Q 000224 1542 RRLIGYCPQFD-ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDP 1620 (1833)
Q Consensus 1542 ~~~ig~~pQ~~-~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p 1620 (1833)
++.|||+||++ .++..+|+.||+.+.....+.+.++..+++.++++.+||.+..++++.+||||||||++||+||+.+|
T Consensus 80 ~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (279)
T PRK13635 80 RRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQP 159 (279)
T ss_pred hhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 77899999997 36667899999988766656665556677889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1621 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1621 ~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
++|||||||+|||+.+++.+++.|++++++.| +|||++||++++++. |||+++|++|++++.|+++++..
T Consensus 160 ~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~-~tilivsH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 160 DIIILDEATSMLDPRGRREVLETVRQLKEQKG-ITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHcCC-CEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999965434 689999999999975 99999999999999999988764
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=422.22 Aligned_cols=217 Identities=28% Similarity=0.420 Sum_probs=192.9
Q ss_pred EEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCC--cceEEEcCccCCccHHHhhcce
Q 000224 561 QIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPT--TGDALVFGKNITADMDEIRKGL 638 (1833)
Q Consensus 561 ~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~--~G~i~i~g~~i~~~~~~~r~~i 638 (1833)
.++|++|+|+ ++.+|+|+|+++++||++||+||||||||||+++|+|..+|+ +|+|.++|+++.. ..++++
T Consensus 70 ~~~~l~~~~~----~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~---~~~~~i 142 (659)
T PLN03211 70 KISDETRQIQ----ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK---QILKRT 142 (659)
T ss_pred ccccccccCC----CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch---hhccce
Confidence 4667778884 346999999999999999999999999999999999999986 9999999998742 345679
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCcccc-----cccCCCChhHHHHHHHHHHHh
Q 000224 639 GVCPQYDILFPELTVREHLEMFAVLK---GVKEELLESVVAEMVDEVGLADKVN-----IVVRALSGGMKRKLSLGIALI 710 (1833)
Q Consensus 639 g~~~Q~~~l~~~lTv~e~l~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~-----~~~~~LSgGqkqrl~lA~al~ 710 (1833)
|||+|++.+++.+||+||+.+.+.++ ..+.++.+++++++++.+||.+..| +.+++||||||||++||+||+
T Consensus 143 ~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~ 222 (659)
T PLN03211 143 GFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML 222 (659)
T ss_pred EEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHH
Confidence 99999999999999999999877654 2345556678999999999987664 456789999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHH-HHHhhcCEEEEeeCCEEEeecCHHHHHhhh
Q 000224 711 GDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMD-EAEELGDRIAIMANGSLKCCGSSLFLKHQY 784 (1833)
Q Consensus 711 ~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~-e~~~l~Dri~im~~G~l~~~G~~~~Lk~~~ 784 (1833)
.+|+||+|||||+|||+.+++++.++|++++ +|+|||++||+++ ++..++|+|++|++|++++.|+++++...+
T Consensus 223 ~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f 298 (659)
T PLN03211 223 INPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYF 298 (659)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHH
Confidence 9999999999999999999999999999986 5999999999998 688999999999999999999999887655
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=407.61 Aligned_cols=218 Identities=32% Similarity=0.458 Sum_probs=196.5
Q ss_pred EEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHH----hh
Q 000224 561 QIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDE----IR 635 (1833)
Q Consensus 561 ~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~----~r 635 (1833)
.++|++|.|+ .+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +... .+
T Consensus 26 ~~~~~~~~~~----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 101 (269)
T cd03294 26 SKEEILKKTG----QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRR 101 (269)
T ss_pred hhhhhhhhcC----CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhc
Confidence 5678899984 3569999999999999999999999999999999999999999999999998753 1111 24
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcE
Q 000224 636 KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 715 (1833)
Q Consensus 636 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 715 (1833)
+++||+||++.+++.+||.||+.+.....+......++++.++++.+||.+..++++++||||||||++|||||+.+|++
T Consensus 102 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~i 181 (269)
T cd03294 102 KKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDI 181 (269)
T ss_pred CcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 67999999999999999999999876666665556667889999999999889999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 716 VILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 716 liLDEPtsgLD~~~r~~l~~~l~~~~-~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
|||||||+|||+.+++.++++|++++ + |+|||++||+++++..+|||+++|++|++++.|++.++.+
T Consensus 182 llLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 182 LLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999984 3 8999999999999999999999999999999999888754
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-42 Score=397.61 Aligned_cols=221 Identities=24% Similarity=0.405 Sum_probs=196.6
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC---hHH
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD---PKA 1540 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~---~~~ 1540 (1833)
+++++|+++.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|+++|.++... ...
T Consensus 1 ~l~~~~l~~~~~~------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 74 (240)
T PRK09493 1 MIEFKNVSKHFGP------TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERL 74 (240)
T ss_pred CEEEEeEEEEECC------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHH
Confidence 4789999999952 4599999999999999999999999999999999999999999999999988642 234
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHH-HcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcC
Q 000224 1541 ARRLIGYCPQFDALLEYLTVQEHLELYAR-IKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1619 (1833)
Q Consensus 1541 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~-~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~ 1619 (1833)
.++++||+||++.+++.+|++||+.+... ..+....+..+.+.++++.+|+.+..++++.+||||||||++||+||+.+
T Consensus 75 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 154 (240)
T PRK09493 75 IRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVK 154 (240)
T ss_pred HhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcC
Confidence 57789999999989888999999987542 23444444556788899999998888999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1620 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1620 p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
|++|+|||||+|||+.+++.+++.|++++ ++| +|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 155 p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~-~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (240)
T PRK09493 155 PKLMLFDEPTSALDPELRHEVLKVMQDLA-EEG-MTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225 (240)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHH-HcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhc
Confidence 99999999999999999999999999986 344 589999999999999999999999999999999887654
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=395.16 Aligned_cols=213 Identities=31% Similarity=0.480 Sum_probs=186.7
Q ss_pred EEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCCh-H----
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDP-K---- 1539 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~-~---- 1539 (1833)
|+++|++++|++++ ..+.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.... .
T Consensus 1 l~~~~l~~~~~~~~--~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 78 (218)
T cd03255 1 IELKNLSKTYGGGG--EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAA 78 (218)
T ss_pred CeEeeeEEEecCCC--cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHH
Confidence 46899999996421 0146999999999999999999999999999999999999999999999999886422 1
Q ss_pred HhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcC
Q 000224 1540 AARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1619 (1833)
Q Consensus 1540 ~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~ 1619 (1833)
..++++||+||++.+++.+|++||+.+....++......++.+.++++.+||.+..++++++|||||||||+||+||+.+
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 158 (218)
T cd03255 79 FRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALAND 158 (218)
T ss_pred HHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccC
Confidence 13567999999999999999999999876666654444556788899999999888999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEE
Q 000224 1620 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681 (1833)
Q Consensus 1620 p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i 1681 (1833)
|++|||||||+|||+.+++.+++.|+++++++| +|||++||++++++ +|||+++|++|++
T Consensus 159 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 159 PKIILADEPTGNLDSETGKEVMELLRELNKEAG-TTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC-CeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 999999999999999999999999999864334 68999999999998 9999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=400.22 Aligned_cols=219 Identities=30% Similarity=0.483 Sum_probs=193.9
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCcc----HHHhh
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD----MDEIR 635 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~----~~~~r 635 (1833)
++++||++.|++ ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....+
T Consensus 1 l~~~~l~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (241)
T cd03256 1 IEVENLSKTYPN---GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLR 77 (241)
T ss_pred CEEeeEEEecCC---ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHH
Confidence 468999999953 14699999999999999999999999999999999999999999999999987532 34567
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHH--------hcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHH
Q 000224 636 KGLGVCPQYDILFPELTVREHLEMFAV--------LKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGI 707 (1833)
Q Consensus 636 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~--------~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~ 707 (1833)
+.+||+||++.+++.+||+||+.+... +.+...+..++++.++++.+||.+..++++.+|||||||||+|||
T Consensus 78 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~ 157 (241)
T cd03256 78 RQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIAR 157 (241)
T ss_pred hccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHH
Confidence 789999999999999999999976432 112222344567889999999998889999999999999999999
Q ss_pred HHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 708 ALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 708 al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~--~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
||+.+|++|||||||+|||+.+++.++++|++++ .|+|||++||+++++..+|||+++|++|+++..|++.++.
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 158 ALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 9999999999999999999999999999999985 3899999999999999999999999999999999887663
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-42 Score=397.98 Aligned_cols=218 Identities=26% Similarity=0.459 Sum_probs=197.4
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc---cHHHhhc
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA---DMDEIRK 636 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~---~~~~~r~ 636 (1833)
++++|+++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .....++
T Consensus 2 l~~~~l~~~~~~----~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (240)
T PRK09493 2 IEFKNVSKHFGP----TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQ 77 (240)
T ss_pred EEEEeEEEEECC----eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhh
Confidence 789999999953 469999999999999999999999999999999999999999999999998753 2345677
Q ss_pred ceEEEccCCCCCCCCCHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcE
Q 000224 637 GLGVCPQYDILFPELTVREHLEMFAV-LKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 715 (1833)
Q Consensus 637 ~ig~~~Q~~~l~~~lTv~e~l~~~~~-~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 715 (1833)
.+||+||++.+++.+||+||+.+... ..+...++.++++.++++.+||++..++++++||||||||++|||||+.+|++
T Consensus 78 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 157 (240)
T PRK09493 78 EAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKL 157 (240)
T ss_pred ceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 89999999999999999999987542 33555566677889999999999888999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 716 VILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 716 liLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
+||||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|+++..|++.++.
T Consensus 158 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 158 MLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 99999999999999999999999986 5899999999999999999999999999999999877654
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-42 Score=403.17 Aligned_cols=223 Identities=25% Similarity=0.382 Sum_probs=197.0
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-h---
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-P--- 1538 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~-~--- 1538 (1833)
.+|+++|++|.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... .
T Consensus 6 ~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 79 (269)
T PRK11831 6 NLVDMRGVSFTRGN------RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRL 79 (269)
T ss_pred ceEEEeCeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhH
Confidence 47999999999952 4699999999999999999999999999999999999999999999999987542 1
Q ss_pred HHhccceEEEecCCCCCCCCCHHHHHHHHHHHc-CCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHh
Q 000224 1539 KAARRLIGYCPQFDALLEYLTVQEHLELYARIK-GVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMI 1617 (1833)
Q Consensus 1539 ~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~-g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~ 1617 (1833)
...++++||+||++.+++.+|+.||+.+..... +.+....++.+.++++.+++.+..++++.+||||||||++||+||+
T Consensus 80 ~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~ 159 (269)
T PRK11831 80 YTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIA 159 (269)
T ss_pred HHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh
Confidence 234677999999999999899999998754332 2333334556778899999998899999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1618 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1618 ~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
.+|++|||||||+|||+.+++.+++.|+++++++| +|||++|||++++..+|||+++|++|++++.|+++++.+
T Consensus 160 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g-~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 160 LEPDLIMFDEPFVGQDPITMGVLVKLISELNSALG-VTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC-cEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999864434 689999999999999999999999999999999988754
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-42 Score=406.48 Aligned_cols=221 Identities=29% Similarity=0.434 Sum_probs=200.4
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHHhhcc
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 637 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~ 637 (1833)
.++++||++.|++. +.+.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .....|++
T Consensus 4 ~l~~~~l~~~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13650 4 IIEVKNLTFKYKED-QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK 82 (279)
T ss_pred eEEEEeEEEEcCCC-CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhh
Confidence 58999999999642 12459999999999999999999999999999999999999999999999998854 34456788
Q ss_pred eEEEccCC-CCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEE
Q 000224 638 LGVCPQYD-ILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVV 716 (1833)
Q Consensus 638 ig~~~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vl 716 (1833)
+||+||++ .+++.+||+||+.+.....+.+.++.++++.++++.+||.+..++.+.+||||||||++|||||+.+|++|
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lL 162 (279)
T PRK13650 83 IGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKII 162 (279)
T ss_pred ceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999997 36777899999998766667777777888999999999998899999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 717 ILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 717 iLDEPtsgLD~~~r~~l~~~l~~~~-~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
||||||+|||+.+++.++++|++++ + |+|||++||+++++. .||||++|++|+++..|++.++.
T Consensus 163 lLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 163 ILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999985 3 899999999999995 79999999999999999987664
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=405.86 Aligned_cols=225 Identities=27% Similarity=0.444 Sum_probs=196.9
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-----h
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-----P 1538 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~-----~ 1538 (1833)
+|+++|++|.|++... ..+.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++... .
T Consensus 2 ~i~~~~l~~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13641 2 SIKFENVDYIYSPGTP-MEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNL 80 (287)
T ss_pred EEEEEEEEEEcCCCCC-ccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchH
Confidence 4789999999963210 124699999999999999999999999999999999999999999999999988531 2
Q ss_pred HHhccceEEEecCC--CCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHHHHHHH
Q 000224 1539 KAARRLIGYCPQFD--ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIA 1615 (1833)
Q Consensus 1539 ~~~~~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~kqrl~lA~a 1615 (1833)
...++.|||+||++ .++ .+|++||+.+.....+...++..+++.++++.++|. +..++++++|||||||||+||+|
T Consensus 81 ~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~lara 159 (287)
T PRK13641 81 KKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGV 159 (287)
T ss_pred HHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHH
Confidence 44567899999996 355 589999998765555555555666788999999997 67899999999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1616 MIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1616 l~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
|+.+|++|||||||+|||+.+++.+++.|++++ ++| +|||++||++++++.+|||+++|++|++++.|+++++.+
T Consensus 160 l~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~-~~g-~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 160 MAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQ-KAG-HTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-hCC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999985 344 689999999999999999999999999999999998764
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=426.22 Aligned_cols=210 Identities=31% Similarity=0.439 Sum_probs=191.3
Q ss_pred CcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCC---cceEEEcCccCCccHHHhhcceEEEccCCCCCCC
Q 000224 574 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPT---TGDALVFGKNITADMDEIRKGLGVCPQYDILFPE 650 (1833)
Q Consensus 574 ~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~---~G~i~i~g~~i~~~~~~~r~~ig~~~Q~~~l~~~ 650 (1833)
+++.+|+|+|+++++||+++|+||||||||||+++|+|..+|. +|+|.++|.++.. ...|+.+|||+|++.+++.
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~--~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA--KEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCH--HHHhhhceeeccccccCcc
Confidence 4567999999999999999999999999999999999999885 8999999998752 3567889999999999999
Q ss_pred CCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCCcccccccC------CCChhHHHHHHHHHHHhCCCcEEEEeCC
Q 000224 651 LTVREHLEMFAVLKG---VKEELLESVVAEMVDEVGLADKVNIVVR------ALSGGMKRKLSLGIALIGDSKVVILDEP 721 (1833)
Q Consensus 651 lTv~e~l~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~~~~~------~LSgGqkqrl~lA~al~~~p~vliLDEP 721 (1833)
+||+|||.|.+.++. .++++.+++++++++.+||.+..|++++ .|||||||||+||+||+.+|++++||||
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEP 193 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEP 193 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCC
Confidence 999999999887752 3456677889999999999998888876 4999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHH-HHHhhcCEEEEeeCCEEEeecCHHHHHhhhC
Q 000224 722 TSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMD-EAEELGDRIAIMANGSLKCCGSSLFLKHQYG 785 (1833)
Q Consensus 722 tsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~-e~~~l~Dri~im~~G~l~~~G~~~~Lk~~~g 785 (1833)
|+|||+.++..+++.|++++ +|+|||+++|++. ++..++||+++|++|+++..|++.++++.+.
T Consensus 194 tsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~ 259 (617)
T TIGR00955 194 TSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFS 259 (617)
T ss_pred CcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHH
Confidence 99999999999999999986 4899999999995 8888999999999999999999998876553
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-42 Score=390.96 Aligned_cols=207 Identities=33% Similarity=0.617 Sum_probs=188.6
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcceE
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 639 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 639 (1833)
|+++||+|.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... ...++.+|
T Consensus 1 l~~~~l~~~~~~----~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK----KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN-IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC----eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch-HHHHhhEE
Confidence 468999999943 4699999999999999999999999999999999999999999999999987543 45567899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEEe
Q 000224 640 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 719 (1833)
Q Consensus 640 ~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 719 (1833)
||||++.+++.+||+||+.++....+.. +++++++++.+++.+..++++++|||||||||+|||||+.+|+++|||
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 151 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIR----KKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILD 151 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCc----HHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 9999999999999999998876554432 456888999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeec
Q 000224 720 EPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 775 (1833)
Q Consensus 720 EPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G 775 (1833)
|||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|++++.|
T Consensus 152 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 152 EPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999986 5899999999999999999999999999998654
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-42 Score=395.59 Aligned_cols=215 Identities=27% Similarity=0.486 Sum_probs=190.0
Q ss_pred EEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC-----CCCceEEEEcCeeCCCC--
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE-----YPTDGTAFIFGKDIRSD-- 1537 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~-----~p~~G~i~i~G~~i~~~-- 1537 (1833)
|+++||++.|++ +.+++|+||+|++||++||+||||||||||+++|+|++ +|++|+|.++|+++...
T Consensus 1 i~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 74 (227)
T cd03260 1 IELRDLNVYYGD------KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74 (227)
T ss_pred CEEEEEEEEcCC------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcch
Confidence 468999999953 46999999999999999999999999999999999999 99999999999987542
Q ss_pred -hHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChh-hHHHHHHHHHHHcCCccccCCC--CCCCChhHHHHHHHH
Q 000224 1538 -PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEY-RMDDVVMEKLVEFDLLKHAKKP--SFTLSGGNKRKLSVA 1613 (1833)
Q Consensus 1538 -~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~-~~~~~~~~~l~~~~L~~~~~~~--~~~LSgG~kqrl~lA 1613 (1833)
....++++||+||++.++ .+|++||+.+.....+.... +.++++.++++.+++.+..+++ +.+||||||||++||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la 153 (227)
T cd03260 75 DVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLA 153 (227)
T ss_pred HHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHH
Confidence 344577899999998888 79999999886655554332 2456778899999998776766 599999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhH
Q 000224 1614 IAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1689 (1833)
Q Consensus 1614 ~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~ 1689 (1833)
+||+.+|++|||||||+|||+.+++.+++.|+++++ + +|||++|||++++.++|||+++|++|++++.|++++
T Consensus 154 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~--~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 154 RALANEPEVLLLDEPTSALDPISTAKIEELIAELKK-E--YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh-C--cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999999999999999853 3 589999999999999999999999999999998765
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-42 Score=392.49 Aligned_cols=208 Identities=26% Similarity=0.513 Sum_probs=189.5
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCcc----HHHhh
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD----MDEIR 635 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~----~~~~r 635 (1833)
++++|+++.|++ ++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....+
T Consensus 2 l~~~~l~~~~~~---~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (214)
T TIGR02673 2 IEFHNVSKAYPG---GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLR 78 (214)
T ss_pred EEEEeeeEEeCC---CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 789999999942 23699999999999999999999999999999999999999999999999988531 23456
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcE
Q 000224 636 KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 715 (1833)
Q Consensus 636 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 715 (1833)
+.+||+||++.+++.+|+.||+.+.....+...+..++++.++++.+||.+..++.+.+||||||||++|||||+.+|++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 158 (214)
T TIGR02673 79 RRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPL 158 (214)
T ss_pred hheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCE
Confidence 78999999999999999999999876666665566677899999999999888999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCE
Q 000224 716 VILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGS 770 (1833)
Q Consensus 716 liLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~ 770 (1833)
+||||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|+
T Consensus 159 llLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 159 LLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999985 58999999999999999999999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=410.74 Aligned_cols=227 Identities=24% Similarity=0.350 Sum_probs=202.7
Q ss_pred ceEEEEeeEEEecCCCC------cccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc--
Q 000224 558 RCIQIRKLHKVYATKRG------NCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-- 629 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~------~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-- 629 (1833)
..|+++||+|.|+.+.+ .+.||+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++..
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 46999999999974322 3579999999999999999999999999999999999999999999999998853
Q ss_pred --cHHHhhcceEEEccCC--CCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCc-ccccccCCCChhHHHHH
Q 000224 630 --DMDEIRKGLGVCPQYD--ILFPELTVREHLEMFAVLK-GVKEELLESVVAEMVDEVGLAD-KVNIVVRALSGGMKRKL 703 (1833)
Q Consensus 630 --~~~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~LSgGqkqrl 703 (1833)
.....|++|||+||++ .+++.+|+.+++....... +..+++.++++.++++.+||.+ ..++++++||||||||+
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv 163 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRI 163 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHH
Confidence 2335677899999998 5889999999998765543 4566677788999999999974 67999999999999999
Q ss_pred HHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 704 SLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 704 ~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~--~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
+|||||+.+|++||+||||+|||+.++++++++|++++ .|.|||++|||++++..+||||++|.+|++++.|+..++.
T Consensus 164 ~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 164 AIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred HHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999999985 3899999999999999999999999999999999998886
Q ss_pred hhh
Q 000224 782 HQY 784 (1833)
Q Consensus 782 ~~~ 784 (1833)
+..
T Consensus 244 ~~p 246 (327)
T PRK11308 244 NNP 246 (327)
T ss_pred cCC
Confidence 543
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-42 Score=389.65 Aligned_cols=211 Identities=36% Similarity=0.599 Sum_probs=190.6
Q ss_pred EEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccc
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1544 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~~~ 1544 (1833)
|+++|++|.|++ +.+++|+||++++| ++||+||||||||||+++|+|+++|++|+|.++|.++.......+++
T Consensus 1 i~~~~~~~~~~~------~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 73 (211)
T cd03264 1 LQLENLTKRYGK------KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRR 73 (211)
T ss_pred CEEEEEEEEECC------EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhh
Confidence 468999999953 45999999999999 99999999999999999999999999999999999886544556788
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000224 1545 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1624 (1833)
Q Consensus 1545 ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~vll 1624 (1833)
++|+||++.+++.+|++||+.+.....+.+..+.++.+.++++.+++.+..++++.+||||||||++||+||+.+|++||
T Consensus 74 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 153 (211)
T cd03264 74 IGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILI 153 (211)
T ss_pred eEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999989999999987666665545556678889999999888899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEec
Q 000224 1625 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1685 (1833)
Q Consensus 1625 LDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g 1685 (1833)
|||||+|||+.+++.+++.|++++ + + .|||++||++++++.+|||+++|++|++++.|
T Consensus 154 lDEPt~~LD~~~~~~l~~~l~~~~-~-~-~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 154 VDEPTAGLDPEERIRFRNLLSELG-E-D-RIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHh-C-C-CEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999985 3 3 58999999999999999999999999998764
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=403.81 Aligned_cols=228 Identities=26% Similarity=0.419 Sum_probs=200.3
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC--hHH
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD--PKA 1540 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~--~~~ 1540 (1833)
.+++++|++|+|++....+.+.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++... ...
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 479999999999742211135699999999999999999999999999999999999999999999999988642 345
Q ss_pred hccceEEEecCCC--CCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhc
Q 000224 1541 ARRLIGYCPQFDA--LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIG 1618 (1833)
Q Consensus 1541 ~~~~ig~~pQ~~~--l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~ 1618 (1833)
.++++||+||++. ++ ..|+.||+.+.....+.+..+.++++.++++.+||.+..++++.+||||||||++||+||+.
T Consensus 83 ~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~ 161 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAM 161 (280)
T ss_pred HhhheEEEecChhhhhc-cccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 6788999999974 44 46999999887665566666666778899999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000224 1619 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693 (1833)
Q Consensus 1619 ~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~ 1693 (1833)
+|++|||||||+|||+.+++.+++.|++++++.| .|||++||++++++. |||+++|++|++++.|+++++...
T Consensus 162 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g-~tillvtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 162 RPECIIFDEPTAMLDPSGRREVVNTIKELNKKYG-ITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEecChHHHhc-CCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999864434 689999999999987 999999999999999999998754
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=396.56 Aligned_cols=219 Identities=27% Similarity=0.417 Sum_probs=195.7
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHH-Hhhc
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMD-EIRK 636 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~-~~r~ 636 (1833)
.|+++|+++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. +.. ..++
T Consensus 2 ~i~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (242)
T TIGR03411 2 ILYLEGLSVSFDG----FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARA 77 (242)
T ss_pred eEEEEeeEEEcCC----eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhc
Confidence 4889999999953 469999999999999999999999999999999999999999999999998753 222 2356
Q ss_pred ceEEEccCCCCCCCCCHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHH
Q 000224 637 GLGVCPQYDILFPELTVREHLEMFAVLK--------GVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIA 708 (1833)
Q Consensus 637 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~--------~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~a 708 (1833)
.+||+||++.+++.+||+||+.++.... +...+..+++++++++.+|+.+..++.+++||||||||++||||
T Consensus 78 ~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~lara 157 (242)
T TIGR03411 78 GIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGML 157 (242)
T ss_pred CeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 7999999999999999999998764321 12233456788999999999988899999999999999999999
Q ss_pred HhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 709 LIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 709 l~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
|+.+|++|||||||+|||+.+++.++++|+++++++|||++||+++++..+||||++|++|++++.|++.++.
T Consensus 158 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 158 LMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQ 230 (242)
T ss_pred HhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence 9999999999999999999999999999999987899999999999999999999999999999999887663
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-42 Score=398.60 Aligned_cols=222 Identities=28% Similarity=0.456 Sum_probs=193.1
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-h---H
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-P---K 1539 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~-~---~ 1539 (1833)
+++++|+++.|+. ++.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++... . .
T Consensus 1 ~l~~~~l~~~~~~-----~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (243)
T TIGR02315 1 MLEVENLSKVYPN-----GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLR 75 (243)
T ss_pred CeEEEeeeeecCC-----CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHH
Confidence 4789999999951 24599999999999999999999999999999999999999999999999987542 1 2
Q ss_pred HhccceEEEecCCCCCCCCCHHHHHHHHHH--------HcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHH
Q 000224 1540 AARRLIGYCPQFDALLEYLTVQEHLELYAR--------IKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLS 1611 (1833)
Q Consensus 1540 ~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~--------~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~ 1611 (1833)
..++++||+||++.+++.+|++||+.+... +.+......++++.++++.+++.+..++++.+|||||||||+
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 155 (243)
T TIGR02315 76 KLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVA 155 (243)
T ss_pred HHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHH
Confidence 356789999999999988999999975321 111122334556788999999988889999999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHH
Q 000224 1612 VAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1691 (1833)
Q Consensus 1612 lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~ 1691 (1833)
||+||+.+|++|||||||+|||+.+++.+++.|++++++.| +|||++||+++++.++|||+++|++|++++.|+++++.
T Consensus 156 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (243)
T TIGR02315 156 IARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDG-ITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELD 234 (243)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHhC
Confidence 99999999999999999999999999999999999864434 68999999999999999999999999999999988763
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=407.96 Aligned_cols=230 Identities=20% Similarity=0.355 Sum_probs=201.5
Q ss_pred ceEEEEeEEEEcCCCcc----ccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCCh
Q 000224 1463 AIIYLRNLRKVYPGGKR----SDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDP 1538 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~----~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~ 1538 (1833)
++|+++||+|.|+.... .+...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++....
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 57999999999963210 01356999999999999999999999999999999999999999999999999986532
Q ss_pred ----HHhccceEEEecCC--CCCCCCCHHHHHHHHHHHc-CCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHH
Q 000224 1539 ----KAARRLIGYCPQFD--ALLEYLTVQEHLELYARIK-GVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKL 1610 (1833)
Q Consensus 1539 ----~~~~~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~~-g~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~kqrl 1610 (1833)
...|++|||+||++ .+.+.+|+.+++....... +....+.++++.++++.+||. +..++++++||||||||+
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv 163 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRI 163 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHH
Confidence 24567899999997 6888999999987655443 455555667889999999996 467999999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000224 1611 SVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690 (1833)
Q Consensus 1611 ~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l 1690 (1833)
+|||||+.+|++||+||||+|||+.+++.++++|++++++.| +|||++|||++++..+||||++|.+|++++.|+.+++
T Consensus 164 ~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g-~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~ 242 (327)
T PRK11308 164 AIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELG-LSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQI 242 (327)
T ss_pred HHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999975444 6899999999999999999999999999999999988
Q ss_pred Hhh
Q 000224 1691 KTR 1693 (1833)
Q Consensus 1691 ~~~ 1693 (1833)
.+.
T Consensus 243 ~~~ 245 (327)
T PRK11308 243 FNN 245 (327)
T ss_pred hcC
Confidence 764
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=404.07 Aligned_cols=222 Identities=25% Similarity=0.402 Sum_probs=199.6
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc---cHHHh
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA---DMDEI 634 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~---~~~~~ 634 (1833)
..|+++||++.|++ ++.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .....
T Consensus 4 ~~l~~~~l~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~ 80 (283)
T PRK13636 4 YILKVEELNYNYSD---GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKL 80 (283)
T ss_pred ceEEEEeEEEEeCC---CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHH
Confidence 46999999999952 2469999999999999999999999999999999999999999999999998842 23457
Q ss_pred hcceEEEccCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCC
Q 000224 635 RKGLGVCPQYDI-LFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDS 713 (1833)
Q Consensus 635 r~~ig~~~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p 713 (1833)
|+.+||+||++. .+...|++||+.+.....+.+.++.+++++++++.+||.+..++++.+||||||||++|||||+.+|
T Consensus 81 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p 160 (283)
T PRK13636 81 RESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEP 160 (283)
T ss_pred HhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 788999999973 2335799999988765556676667788999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 714 KVVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 714 ~vliLDEPtsgLD~~~r~~l~~~l~~~~-~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
++|||||||+|||+.+++.++++|++++ + |+|||++||+++++..+|||+++|++|++++.|++.++..
T Consensus 161 ~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 161 KVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999985 3 8999999999999999999999999999999999877643
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=401.46 Aligned_cols=221 Identities=27% Similarity=0.459 Sum_probs=197.7
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-c---HHH
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-D---MDE 633 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~---~~~ 633 (1833)
..|+++||++.|+ ++.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. . ...
T Consensus 6 ~~l~~~~l~~~~~----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (269)
T PRK11831 6 NLVDMRGVSFTRG----NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYT 81 (269)
T ss_pred ceEEEeCeEEEEC----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHH
Confidence 4699999999995 3469999999999999999999999999999999999999999999999998753 1 223
Q ss_pred hhcceEEEccCCCCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCC
Q 000224 634 IRKGLGVCPQYDILFPELTVREHLEMFAVLK-GVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGD 712 (1833)
Q Consensus 634 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~ 712 (1833)
.++.+||+||++.+++.+|+.||+.+..... +.+....++++.++++.+||.+..++++++||||||||++|||||+.+
T Consensus 82 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~ 161 (269)
T PRK11831 82 VRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALE 161 (269)
T ss_pred HhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 5678999999999999999999998764332 344455566788999999999888999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 713 SKVVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 713 p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
|++|||||||+|||+.+++.++++|++++ + |+|||++||+++++..+|||+++|++|+++..|++.++.+
T Consensus 162 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 162 PDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999985 3 8999999999999999999999999999999999877653
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=388.38 Aligned_cols=210 Identities=37% Similarity=0.582 Sum_probs=190.0
Q ss_pred EEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccc
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1544 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~~~ 1544 (1833)
++++|+++.|++ +.+++++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.. ..+++
T Consensus 1 l~~~~l~~~~~~------~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~---~~~~~ 71 (210)
T cd03269 1 LEVENVTKRFGR------VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI---AARNR 71 (210)
T ss_pred CEEEEEEEEECC------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH---HHHcc
Confidence 468999999952 459999999999999999999999999999999999999999999999988742 35678
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000224 1545 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1624 (1833)
Q Consensus 1545 ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~vll 1624 (1833)
++|+||++.+++.+|++||+.+....++.+..+.++.+.++++.+++.+..++++.+||||||||++||+||+.+|++||
T Consensus 72 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~ll 151 (210)
T cd03269 72 IGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLI 151 (210)
T ss_pred EEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999999887766666555556778899999999888899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEec
Q 000224 1625 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1685 (1833)
Q Consensus 1625 LDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g 1685 (1833)
|||||+|||+.+++.+++.|+++++ ++ +|||++||++++++.+|||+++|++|++++.|
T Consensus 152 lDEP~~~LD~~~~~~~~~~l~~~~~-~~-~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 152 LDEPFSGLDPVNVELLKDVIRELAR-AG-KTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHH-CC-CEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999999999864 44 58999999999999999999999999998754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=396.00 Aligned_cols=219 Identities=26% Similarity=0.464 Sum_probs=195.5
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-----ceEEEEcCeeCCC--
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT-----DGTAFIFGKDIRS-- 1536 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~-----~G~i~i~G~~i~~-- 1536 (1833)
+++++|++|+|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 1 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~ 74 (247)
T TIGR00972 1 AIEIENLNLFYGE------KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKK 74 (247)
T ss_pred CEEEEEEEEEECC------eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccc
Confidence 4789999999963 45999999999999999999999999999999999999998 9999999998864
Q ss_pred -ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCC-ChhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHHHH
Q 000224 1537 -DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGV-AEYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKRKL 1610 (1833)
Q Consensus 1537 -~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~-~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgG~kqrl 1610 (1833)
.....++.+||+||++.+++ +|++||+.+....++. +..+..+.+.++++.+++. +..++++.+||||||||+
T Consensus 75 ~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv 153 (247)
T TIGR00972 75 IDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRL 153 (247)
T ss_pred cchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHH
Confidence 23456778999999998888 9999999886655552 3344556788899999997 678899999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000224 1611 SVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690 (1833)
Q Consensus 1611 ~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l 1690 (1833)
+|||||+.+|++|||||||+|||+.+++.++++|+++++ + +|||++||+++++..+|||+++|++|++++.|+++++
T Consensus 154 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 154 CIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--K-YTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--c-CeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999853 3 5899999999999999999999999999999999887
Q ss_pred Hh
Q 000224 1691 KT 1692 (1833)
Q Consensus 1691 ~~ 1692 (1833)
.+
T Consensus 231 ~~ 232 (247)
T TIGR00972 231 FT 232 (247)
T ss_pred Hh
Confidence 54
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-42 Score=390.34 Aligned_cols=209 Identities=26% Similarity=0.455 Sum_probs=190.1
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCcc----HHHhh
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD----MDEIR 635 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~----~~~~r 635 (1833)
++++|+++.|+++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....|
T Consensus 1 l~~~~l~~~~~~~---~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 77 (214)
T cd03292 1 IEFINVTKTYPNG---TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLR 77 (214)
T ss_pred CEEEEEEEEeCCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHH
Confidence 4689999999532 3699999999999999999999999999999999999999999999999987531 23467
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcE
Q 000224 636 KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 715 (1833)
Q Consensus 636 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 715 (1833)
+.++|+||++.+++.+|++||+.++....+...++.++++.++++.+|+.+..++++.+||||||||++|||||+.+|++
T Consensus 78 ~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 157 (214)
T cd03292 78 RKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTI 157 (214)
T ss_pred HheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCE
Confidence 78999999999999999999999877666666666677899999999999888999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEE
Q 000224 716 VILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSL 771 (1833)
Q Consensus 716 liLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l 771 (1833)
+||||||+|||+.+++.+++.|++++ +|+|||++||++++++.+||++++|++|++
T Consensus 158 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 158 LIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999985 589999999999999999999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-42 Score=392.49 Aligned_cols=216 Identities=30% Similarity=0.507 Sum_probs=192.6
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHH-Hhhcc
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMD-EIRKG 637 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~-~~r~~ 637 (1833)
|+++||+++|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.. ..++.
T Consensus 1 l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (222)
T cd03224 1 LEVENLNAGYGK----SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAG 76 (222)
T ss_pred CEEeeEEeecCC----eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcC
Confidence 468999999953 469999999999999999999999999999999999999999999999998753 222 24577
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-CCCcccccccCCCChhHHHHHHHHHHHhCCCcEE
Q 000224 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEV-GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVV 716 (1833)
Q Consensus 638 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~-~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vl 716 (1833)
+||+||++.+++.+|++||+.+.....+ ..+.++++.++++.+ ++.+..++++++||||||||++|||||+.+|++|
T Consensus 77 i~~~~q~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 154 (222)
T cd03224 77 IGYVPEGRRIFPELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLL 154 (222)
T ss_pred eEEeccccccCCCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999999988765443 233456677888888 5888889999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 717 ILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 717 iLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
||||||+|||+.+++.++++|++++ +|+|||++||+++++..+||||++|++|++++.|++.++.
T Consensus 155 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 155 LLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred EECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9999999999999999999999986 5899999999999999999999999999999999877654
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-42 Score=388.33 Aligned_cols=208 Identities=36% Similarity=0.552 Sum_probs=187.2
Q ss_pred EEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccc
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1544 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~~~ 1544 (1833)
|+++|++|+|++ +.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.
T Consensus 1 l~~~~l~~~~~~------~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~ 73 (208)
T cd03268 1 LKTNDLTKTYGK------KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN-IEALRR 73 (208)
T ss_pred CEEEEEEEEECC------eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch-HHHHhh
Confidence 468999999952 4699999999999999999999999999999999999999999999999987543 445678
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000224 1545 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1624 (1833)
Q Consensus 1545 ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~vll 1624 (1833)
+||+||++.+++.+|++||+.++...++.. ++++.++++.+++.+..++++.+|||||||||+||+||+.+|++||
T Consensus 74 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 149 (208)
T cd03268 74 IGALIEAPGFYPNLTARENLRLLARLLGIR----KKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLI 149 (208)
T ss_pred EEEecCCCccCccCcHHHHHHHHHHhcCCc----HHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999998998999999998876554432 3457788999999988899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEec
Q 000224 1625 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1685 (1833)
Q Consensus 1625 LDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g 1685 (1833)
|||||+|||+.+++.+++.|+++++ +| .|||++||+++++..+|||+++|++|++++.|
T Consensus 150 lDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 150 LDEPTNGLDPDGIKELRELILSLRD-QG-ITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred ECCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999864 44 58999999999999999999999999998764
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=397.60 Aligned_cols=219 Identities=28% Similarity=0.423 Sum_probs=197.5
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCcc--------
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD-------- 630 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~-------- 630 (1833)
.++++||++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 3 ~l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (250)
T PRK11264 3 AIEVKNLVKKFHG----QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKG 78 (250)
T ss_pred cEEEeceEEEECC----eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhh
Confidence 4899999999953 3599999999999999999999999999999999999999999999999987421
Q ss_pred -HHHhhcceEEEccCCCCCCCCCHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHH
Q 000224 631 -MDEIRKGLGVCPQYDILFPELTVREHLEMFAV-LKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIA 708 (1833)
Q Consensus 631 -~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~-~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~a 708 (1833)
....++.+||+||++.+++.+|+.||+.+... .++...+..++++.++++.+||.+..++.+++||||||||++||||
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~a 158 (250)
T PRK11264 79 LIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARA 158 (250)
T ss_pred HHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHH
Confidence 23457789999999999999999999987543 3445555566788999999999988899999999999999999999
Q ss_pred HhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 709 LIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 709 l~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
|+.+|++|||||||+|||+.+++.++++|++++ +|+|||++||+++++..+||||++|++|+++..|++.++.
T Consensus 159 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 159 LAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999986 4899999999999999999999999999999999987764
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=402.85 Aligned_cols=222 Identities=28% Similarity=0.447 Sum_probs=200.3
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHHhhc
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 636 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~ 636 (1833)
..++++||++.|++. .+.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. .....++
T Consensus 4 ~~l~~~~l~~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (279)
T PRK13635 4 EIIRVEHISFRYPDA--ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRR 81 (279)
T ss_pred ceEEEEEEEEEeCCC--CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhh
Confidence 469999999999632 2469999999999999999999999999999999999999999999999999864 3345677
Q ss_pred ceEEEccCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcE
Q 000224 637 GLGVCPQYDI-LFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 715 (1833)
Q Consensus 637 ~ig~~~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 715 (1833)
.|||+||++. ++...||.||+.+.....+.+.++.++++.++++.+||.+..++++.+||||||||++|||||+.+|++
T Consensus 82 ~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~l 161 (279)
T PRK13635 82 QVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDI 161 (279)
T ss_pred heEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 8999999973 677789999999877666666666778899999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 716 VILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 716 liLDEPtsgLD~~~r~~l~~~l~~~~~--g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
|||||||+|||+.+++.++++|+++++ |+|||++||+++++.. ||||++|++|++++.|++.++..
T Consensus 162 llLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 162 IILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999863 8999999999999975 99999999999999999877643
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=401.22 Aligned_cols=221 Identities=26% Similarity=0.393 Sum_probs=196.4
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC--hHHh
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD--PKAA 1541 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~--~~~~ 1541 (1833)
+++++|++|+|++ ++.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++... ....
T Consensus 1 ml~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 75 (274)
T PRK13644 1 MIRLENVSYSYPD-----GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGI 75 (274)
T ss_pred CEEEEEEEEEcCC-----CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHH
Confidence 4789999999952 24599999999999999999999999999999999999999999999999988642 2456
Q ss_pred ccceEEEecCCC-CCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCC
Q 000224 1542 RRLIGYCPQFDA-LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDP 1620 (1833)
Q Consensus 1542 ~~~ig~~pQ~~~-l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p 1620 (1833)
++.+||+||++. .+...|+.||+.+.....+.+..+..+.+.++++.++|.+..++++.+||||||||++||+||+.+|
T Consensus 76 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p 155 (274)
T PRK13644 76 RKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEP 155 (274)
T ss_pred HhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 778999999975 3556899999987765556666666677888999999998899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1621 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1621 ~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
+||||||||+|||+.+++.+++.|+++++ +| +|||++||++++++ .|||+++|++|++++.|+++++..
T Consensus 156 ~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g-~til~~tH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 156 ECLIFDEVTSMLDPDSGIAVLERIKKLHE-KG-KTIVYITHNLEELH-DADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHh-CC-CEEEEEecCHHHHh-hCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999863 44 68999999999995 599999999999999999988754
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=391.18 Aligned_cols=218 Identities=30% Similarity=0.445 Sum_probs=191.6
Q ss_pred EEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-hHH-hc
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-PKA-AR 1542 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~~-~~ 1542 (1833)
|+++|++|+|++ +.+++++||++++||++||+||||||||||+++|+|+++|++|+|.++|.++... ... .+
T Consensus 1 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (222)
T cd03224 1 LEVENLNAGYGK------SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74 (222)
T ss_pred CEEeeEEeecCC------eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHh
Confidence 468999999953 4699999999999999999999999999999999999999999999999988642 222 35
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHc-CCccccCCCCCCCChhHHHHHHHHHHHhcCCC
Q 000224 1543 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEF-DLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1621 (1833)
Q Consensus 1543 ~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~-~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~ 1621 (1833)
+++||+||++.+++.+|++||+.+.....+ ..+.++.+.++++.+ ++.+..++++.+||||||||++|||||+.+|+
T Consensus 75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 152 (222)
T cd03224 75 AGIGYVPEGRRIFPELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPK 152 (222)
T ss_pred cCeEEeccccccCCCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 679999999999999999999988665443 223345566778888 57777899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1622 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1622 vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
+|||||||+|||+.+++.+++.|+++++ +| +|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 153 LLLLDEPSEGLAPKIVEEIFEAIRELRD-EG-VTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999999864 44 689999999999999999999999999999999887653
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=397.52 Aligned_cols=222 Identities=28% Similarity=0.457 Sum_probs=195.4
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhc
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAAR 1542 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~~ 1542 (1833)
+|+++|++|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .....+
T Consensus 2 ~l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~ 75 (258)
T PRK13548 2 MLEARNLSVRLGG------RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELA 75 (258)
T ss_pred eEEEEeEEEEeCC------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhh
Confidence 5899999999963 459999999999999999999999999999999999999999999999998754 334456
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHh-----
Q 000224 1543 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMI----- 1617 (1833)
Q Consensus 1543 ~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~----- 1617 (1833)
+.+||+||++.+++.+|++||+.+.....+...++.++.+.++++.+++.+..++++.+|||||||||+||+||+
T Consensus 76 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~ 155 (258)
T PRK13548 76 RRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEP 155 (258)
T ss_pred hheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccc
Confidence 789999999888788999999987543333323334456788999999998889999999999999999999999
Q ss_pred -cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1618 -GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1618 -~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
.+|++|||||||+|||+.+++.+.+.|+++++++| .|||++||+++++..+||||++|++|+++..|+++++.+
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 156 DGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERG-LAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred CCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 59999999999999999999999999999863444 589999999999999999999999999999999887653
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=389.13 Aligned_cols=210 Identities=31% Similarity=0.496 Sum_probs=187.7
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-h---H
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-P---K 1539 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~-~---~ 1539 (1833)
+++++|++|.|++ ++.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... . .
T Consensus 1 ~l~~~~l~~~~~~-----~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (214)
T TIGR02673 1 MIEFHNVSKAYPG-----GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLP 75 (214)
T ss_pred CEEEEeeeEEeCC-----CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHH
Confidence 4789999999942 24599999999999999999999999999999999999999999999999998642 1 2
Q ss_pred HhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcC
Q 000224 1540 AARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1619 (1833)
Q Consensus 1540 ~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~ 1619 (1833)
..++.+||+||++.+++.+|++||+.+....++......++++.++++.+++.+..++++.+|||||||||+||+||+.+
T Consensus 76 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (214)
T TIGR02673 76 LLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNS 155 (214)
T ss_pred HHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCC
Confidence 35678999999999998899999998876655555445566788999999999888999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCE
Q 000224 1620 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQ 1680 (1833)
Q Consensus 1620 p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~ 1680 (1833)
|++|||||||+|||+.+++.+++.|+++++ +| +|||++||++++++.+|||+++|++|+
T Consensus 156 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 156 PPLLLADEPTGNLDPDLSERILDLLKRLNK-RG-TTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999853 44 589999999999999999999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=398.11 Aligned_cols=220 Identities=28% Similarity=0.432 Sum_probs=197.8
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCC-----CcceEEEcCccCCc---
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP-----TTGDALVFGKNITA--- 629 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~g~~i~~--- 629 (1833)
..|+++|+++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++..
T Consensus 11 ~~l~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 86 (258)
T PRK14268 11 PQIKVENLNLWYGE----KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDV 86 (258)
T ss_pred eeEEEeeeEEEeCC----eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccc
Confidence 57999999999953 4599999999999999999999999999999999999985 89999999998753
Q ss_pred cHHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHHH
Q 000224 630 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLSL 705 (1833)
Q Consensus 630 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~----~~~~~~~~~LSgGqkqrl~l 705 (1833)
.....++.+||+||++.+++ +|++||+.+.....+.+.+..++++.++++.+|+. +..++++.+|||||||||+|
T Consensus 87 ~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~l 165 (258)
T PRK14268 87 DVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCI 165 (258)
T ss_pred hHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHH
Confidence 22345778999999998888 89999999876666666666667889999999984 45688999999999999999
Q ss_pred HHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 706 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 706 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+||||++|++|++++.|++.++..
T Consensus 166 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 242 (258)
T PRK14268 166 ARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH 242 (258)
T ss_pred HHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998778999999999999999999999999999999999887753
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=401.71 Aligned_cols=221 Identities=28% Similarity=0.453 Sum_probs=199.0
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHHhhcc
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 637 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~ 637 (1833)
.++++||+|.|++. ..+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .....++.
T Consensus 3 ~l~~~~l~~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 79 (277)
T PRK13652 3 LIETRDLCYSYSGS---KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKF 79 (277)
T ss_pred eEEEEEEEEEeCCC---CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 48899999999532 359999999999999999999999999999999999999999999999998853 34456788
Q ss_pred eEEEccCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEE
Q 000224 638 LGVCPQYDI-LFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVV 716 (1833)
Q Consensus 638 ig~~~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vl 716 (1833)
+|||||++. .+...||.||+.+.....+.+.+..+++++++++.+||.+..++.+.+||||||||++|||||+.+|++|
T Consensus 80 i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~ll 159 (277)
T PRK13652 80 VGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVL 159 (277)
T ss_pred eEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999974 2335799999987665556666677788999999999998899999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 717 ILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 717 iLDEPtsgLD~~~r~~l~~~l~~~~-~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
||||||+|||+.+++.++++|++++ + |+|||++||+++++..+||||++|++|+++..|++.++..
T Consensus 160 ilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 160 VLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 9999999999999999999999985 3 8999999999999999999999999999999999988753
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=390.61 Aligned_cols=210 Identities=25% Similarity=0.430 Sum_probs=191.1
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-c---HHHhh
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-D---MDEIR 635 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~---~~~~r 635 (1833)
|+++|++|.|++ ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . ....|
T Consensus 2 l~~~~l~~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 78 (222)
T PRK10908 2 IRFEHVSKAYLG---GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLR 78 (222)
T ss_pred EEEEeeEEEecC---CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHH
Confidence 789999999942 2369999999999999999999999999999999999999999999999998753 1 22357
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcE
Q 000224 636 KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 715 (1833)
Q Consensus 636 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 715 (1833)
+.+||+||++.+++.+|++||+.+.....+.+.++.++++.++++.+|+.+..++.+++||||||||++|||||+.+|++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 158 (222)
T PRK10908 79 RQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAV 158 (222)
T ss_pred hheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCE
Confidence 78999999998888899999999877666666666677889999999999888999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEE
Q 000224 716 VILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLK 772 (1833)
Q Consensus 716 liLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~ 772 (1833)
|||||||+|||+.+++.++++|++++ +|+|||++||+++++..+||||++|++|+++
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 159 LLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 99999999999999999999999985 5899999999999999999999999999985
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=395.93 Aligned_cols=221 Identities=26% Similarity=0.373 Sum_probs=196.4
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC------
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD------ 1537 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~------ 1537 (1833)
+++++|+++.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (250)
T PRK11264 3 AIEVKNLVKKFHG------QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76 (250)
T ss_pred cEEEeceEEEECC------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccch
Confidence 6899999999963 4599999999999999999999999999999999999999999999999987531
Q ss_pred ---hHHhccceEEEecCCCCCCCCCHHHHHHHHHH-HcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHH
Q 000224 1538 ---PKAARRLIGYCPQFDALLEYLTVQEHLELYAR-IKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVA 1613 (1833)
Q Consensus 1538 ---~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~-~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA 1613 (1833)
....++.+||+||++.+++.+|++||+.+... .++.......+.+.++++.+++.+..++++++|||||||||+||
T Consensus 77 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la 156 (250)
T PRK11264 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIA 156 (250)
T ss_pred hhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHH
Confidence 13456789999999999988999999987543 23444444556778899999998888999999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1614 IAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1614 ~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
+||+.+|++|||||||+|||+.+++.+++.|+++++ +| .|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 157 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 233 (250)
T PRK11264 157 RALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EK-RTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233 (250)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-cC-CEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999863 44 589999999999999999999999999999999888754
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=396.71 Aligned_cols=214 Identities=25% Similarity=0.413 Sum_probs=191.5
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhcc
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1543 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~~ 1543 (1833)
+|+++|++|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ++
T Consensus 1 ml~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----~~ 70 (255)
T PRK11248 1 MLQISHLYADYGG------KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP----GA 70 (255)
T ss_pred CEEEEEEEEEeCC------eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC----CC
Confidence 4789999999953 4599999999999999999999999999999999999999999999999987531 24
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEE
Q 000224 1544 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1623 (1833)
Q Consensus 1544 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~vl 1623 (1833)
.+||+||++.+++.+|++||+.+.....+....+..+++.++++.++|.+..++++.+|||||||||+||+||+.+|++|
T Consensus 71 ~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~ll 150 (255)
T PRK11248 71 ERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLL 150 (255)
T ss_pred cEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 58999999999888999999987665556555555567889999999988889999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEE--CCEEEEecChh
Q 000224 1624 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMV--GGQLRCIGSPQ 1688 (1833)
Q Consensus 1624 lLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~--~G~i~~~g~~~ 1688 (1833)
||||||+|||+.+++.+++.|+++++++| +|||++|||++++..+|||+++|+ +|++++.++.+
T Consensus 151 lLDEPt~~LD~~~~~~l~~~L~~~~~~~g-~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 151 LLDEPFGALDAFTREQMQTLLLKLWQETG-KQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999999999999999999999854444 689999999999999999999998 59999887654
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=401.31 Aligned_cols=218 Identities=28% Similarity=0.385 Sum_probs=197.2
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc--cHHHhhcc
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA--DMDEIRKG 637 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~--~~~~~r~~ 637 (1833)
++++||+|.|++ ++.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.. .....++.
T Consensus 2 l~~~~l~~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (274)
T PRK13644 2 IRLENVSYSYPD---GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKL 78 (274)
T ss_pred EEEEEEEEEcCC---CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhh
Confidence 789999999953 2359999999999999999999999999999999999999999999999998853 23456788
Q ss_pred eEEEccCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEE
Q 000224 638 LGVCPQYDI-LFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVV 716 (1833)
Q Consensus 638 ig~~~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vl 716 (1833)
+|||||++. .+...|+.||+.+.....+.+..+.+++++++++.+||.+..++++++||||||||++||+||+.+|++|
T Consensus 79 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 158 (274)
T PRK13644 79 VGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECL 158 (274)
T ss_pred eEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999975 3666899999998766666777777788999999999999899999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 717 ILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 717 iLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
||||||+|||+.+++.++++|++++ +|+|||++||+++++. .||||++|++|++++.|++.++.
T Consensus 159 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 159 IFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999986 5899999999999996 59999999999999999987764
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=399.87 Aligned_cols=224 Identities=27% Similarity=0.428 Sum_probs=197.9
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHh
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAA 1541 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 1541 (1833)
.+++++|++|.|++ +++.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .....
T Consensus 6 ~~l~~~nl~~~~~~----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 81 (271)
T PRK13632 6 VMIKVENVSFSYPN----SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEI 81 (271)
T ss_pred eEEEEEeEEEEcCC----CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHH
Confidence 57999999999963 13469999999999999999999999999999999999999999999999999864 33456
Q ss_pred ccceEEEecCCC-CCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCC
Q 000224 1542 RRLIGYCPQFDA-LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDP 1620 (1833)
Q Consensus 1542 ~~~ig~~pQ~~~-l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p 1620 (1833)
++++||+||++. .++.+|++||+.+.....+...++.++.+.++++.++|.+..++++.+||||||||++|||||+.+|
T Consensus 82 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 161 (271)
T PRK13632 82 RKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNP 161 (271)
T ss_pred hcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 788999999974 5667899999987655445555555667888999999998899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1621 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1621 ~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
++|||||||+|||+.+++.++++|++++++ +++|||++||++++++ .|||+++|++|++++.|+++++..
T Consensus 162 ~lllLDEP~~gLD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 162 EIIIFDESTSMLDPKGKREIKKIMVDLRKT-RKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEEechhHHh-hCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999998643 3368999999999996 799999999999999999887654
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=397.09 Aligned_cols=218 Identities=28% Similarity=0.462 Sum_probs=192.6
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-c---HHHhh
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-D---MDEIR 635 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~---~~~~r 635 (1833)
++++||++.|+. ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . ....+
T Consensus 2 l~~~~l~~~~~~---~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR02315 2 LEVENLSKVYPN---GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLR 78 (243)
T ss_pred eEEEeeeeecCC---CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHH
Confidence 689999999951 2469999999999999999999999999999999999999999999999998753 1 23457
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHH--------hcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHH
Q 000224 636 KGLGVCPQYDILFPELTVREHLEMFAV--------LKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGI 707 (1833)
Q Consensus 636 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~--------~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~ 707 (1833)
+.+||+||++.+++.+||+||+.+... +.+....+.++++.++++.+||.+..++++.+||||||||++|||
T Consensus 79 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~ 158 (243)
T TIGR02315 79 RRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIAR 158 (243)
T ss_pred hheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHH
Confidence 789999999999999999999976421 111222344677899999999998889999999999999999999
Q ss_pred HHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q 000224 708 ALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFL 780 (1833)
Q Consensus 708 al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~L 780 (1833)
||+.+|++|||||||+|||+.+++.++++|++++ + |+|||++||+++++..+||++++|++|++++.|++.++
T Consensus 159 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 159 ALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 9999999999999999999999999999999984 3 89999999999999999999999999999999988665
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-42 Score=387.55 Aligned_cols=203 Identities=31% Similarity=0.462 Sum_probs=180.7
Q ss_pred EEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcceEE
Q 000224 561 QIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGV 640 (1833)
Q Consensus 561 ~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig~ 640 (1833)
+++||+|.|++. +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...++++||
T Consensus 1 ~~~~l~~~~~~~---~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG---TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA--KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc---CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh--HHhhcceEE
Confidence 367999999531 469999999999999999999999999999999999999999999999998753 345678999
Q ss_pred EccCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEEe
Q 000224 641 CPQYDI-LFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 719 (1833)
Q Consensus 641 ~~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 719 (1833)
+||++. .+..+|++||+.++....+. .++++.++++.+||.+..++++++||||||||++|||||+.+|++||||
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 151 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDA----GNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFD 151 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCc----cHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 999974 23467999999886544331 2357889999999999899999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEE
Q 000224 720 EPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLK 772 (1833)
Q Consensus 720 EPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~ 772 (1833)
|||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|+++
T Consensus 152 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 152 EPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999984 6899999999999999999999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=396.19 Aligned_cols=221 Identities=23% Similarity=0.390 Sum_probs=198.2
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc--------
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-------- 629 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-------- 629 (1833)
..++++||++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..
T Consensus 4 ~~l~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (257)
T PRK10619 4 NKLNVIDLHKRYGE----HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79 (257)
T ss_pred ccEEEeeeEEEECC----EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccc
Confidence 35999999999953 469999999999999999999999999999999999999999999999987742
Q ss_pred ------cHHHhhcceEEEccCCCCCCCCCHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCCccc-ccccCCCChhHHH
Q 000224 630 ------DMDEIRKGLGVCPQYDILFPELTVREHLEMFA-VLKGVKEELLESVVAEMVDEVGLADKV-NIVVRALSGGMKR 701 (1833)
Q Consensus 630 ------~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~-~~~~~~~~~~~~~v~~~l~~~~L~~~~-~~~~~~LSgGqkq 701 (1833)
+....++.+||+||++.+++.+|++||+.+.. ...+....+.++++.++++.+|+.+.. ++.+.+|||||||
T Consensus 80 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~q 159 (257)
T PRK10619 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQ 159 (257)
T ss_pred ccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHH
Confidence 12356788999999999999999999998743 334455556678899999999998764 8889999999999
Q ss_pred HHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q 000224 702 KLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFL 780 (1833)
Q Consensus 702 rl~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~L 780 (1833)
|++|||||+.+|+++||||||+|||+.+++.++++|++++ +|+|||++||+++++..+||||++|++|+++..|++.++
T Consensus 160 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (257)
T PRK10619 160 RVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQL 239 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999999999999999999986 589999999999999999999999999999999998776
Q ss_pred Hh
Q 000224 781 KH 782 (1833)
Q Consensus 781 k~ 782 (1833)
.+
T Consensus 240 ~~ 241 (257)
T PRK10619 240 FG 241 (257)
T ss_pred hh
Confidence 43
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=388.30 Aligned_cols=213 Identities=28% Similarity=0.429 Sum_probs=189.6
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-h---H
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-P---K 1539 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~-~---~ 1539 (1833)
+|+++|++|.|++ ++.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... . .
T Consensus 1 ~l~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~ 75 (222)
T PRK10908 1 MIRFEHVSKAYLG-----GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVP 75 (222)
T ss_pred CEEEEeeEEEecC-----CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHH
Confidence 4789999999942 24599999999999999999999999999999999999999999999999988542 1 2
Q ss_pred HhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcC
Q 000224 1540 AARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1619 (1833)
Q Consensus 1540 ~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~ 1619 (1833)
..++.+||+||++.+++.+|++||+.+....++....+..+.+.++++.+++.+..++++.+||||||||++||+||+.+
T Consensus 76 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (222)
T PRK10908 76 FLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNK 155 (222)
T ss_pred HHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcC
Confidence 35678999999998888899999998876666655555556678899999998888999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEE
Q 000224 1620 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRC 1683 (1833)
Q Consensus 1620 p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~ 1683 (1833)
|++|||||||+|||+.+++.+++.|+++++ ++ +|||++||++++++.+|||+++|++|+++.
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 156 PAVLLADEPTGNLDDALSEGILRLFEEFNR-VG-VTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999864 44 589999999999999999999999999853
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=389.51 Aligned_cols=212 Identities=27% Similarity=0.490 Sum_probs=188.0
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cH---HHhh
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DM---DEIR 635 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~---~~~r 635 (1833)
++++||++.|+++.+.+.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +. ...|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 7899999999643223469999999999999999999999999999999999999999999999998753 21 1233
Q ss_pred -cceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCc
Q 000224 636 -KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSK 714 (1833)
Q Consensus 636 -~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~ 714 (1833)
+.+||+||++.+++.+|++||+.+.....+.+..+.++++.++++.+|+.+..++.+++||||||||++|||||+.+|+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 161 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPS 161 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCC
Confidence 6799999999999999999999886655555555556788999999999988899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEE
Q 000224 715 VVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLK 772 (1833)
Q Consensus 715 vliLDEPtsgLD~~~r~~l~~~l~~~~--~g~tiil~tH~~~e~~~l~Dri~im~~G~l~ 772 (1833)
+|||||||+|||+.+++.++++|++++ .|+|||++||++++++. |||+++|++|+++
T Consensus 162 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 162 LVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence 999999999999999999999999985 38999999999999976 8999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=399.41 Aligned_cols=221 Identities=24% Similarity=0.390 Sum_probs=195.1
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC---ChHH
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS---DPKA 1540 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~---~~~~ 1540 (1833)
||+++|++|+|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. ....
T Consensus 1 ml~~~~l~~~~~~------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 74 (271)
T PRK13638 1 MLATSDLWFRYQD------EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLA 74 (271)
T ss_pred CeEEEEEEEEcCC------cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHH
Confidence 4789999999953 459999999999999999999999999999999999999999999999999842 2234
Q ss_pred hccceEEEecCCCC-CCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcC
Q 000224 1541 ARRLIGYCPQFDAL-LEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1619 (1833)
Q Consensus 1541 ~~~~ig~~pQ~~~l-~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~ 1619 (1833)
.+++|||+||++.+ +...|+.||+.+.....+....+..+.+.++++.+++.+..++++.+||||||||++||+||+.+
T Consensus 75 ~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~ 154 (271)
T PRK13638 75 LRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQ 154 (271)
T ss_pred HHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcC
Confidence 56789999999753 34468999998766555655555556778899999998888999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1620 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1620 p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
|++|||||||+|||+.+++.+++.|+++++ +| +|||++|||++++..+|||+++|++|++++.|+++++.+
T Consensus 155 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g-~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (271)
T PRK13638 155 ARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QG-NHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225 (271)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999864 44 589999999999999999999999999999999988754
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=394.39 Aligned_cols=219 Identities=29% Similarity=0.503 Sum_probs=197.2
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-c-HHHhhc
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-D-MDEIRK 636 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~-~~~~r~ 636 (1833)
.++++||+|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. + ....|+
T Consensus 3 ~l~~~~l~~~~~~----~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (241)
T PRK10895 3 TLTAKNLAKAYKG----RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARR 78 (241)
T ss_pred eEEEeCcEEEeCC----EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHh
Confidence 5889999999953 469999999999999999999999999999999999999999999999998753 2 233567
Q ss_pred ceEEEccCCCCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcE
Q 000224 637 GLGVCPQYDILFPELTVREHLEMFAVLK-GVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 715 (1833)
Q Consensus 637 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 715 (1833)
.+||+||++.+++.+|+.||+.+..... +.+.++.+++++++++.+|+.+..++++++||||||||++|||||+.+|++
T Consensus 79 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 158 (241)
T PRK10895 79 GIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKF 158 (241)
T ss_pred CeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 8999999999999999999998765443 344455667889999999999888999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 716 VILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 716 liLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
|||||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|++++.|++.++.
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 159 ILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 99999999999999999999999986 5899999999999999999999999999999999987653
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=388.26 Aligned_cols=208 Identities=34% Similarity=0.546 Sum_probs=186.0
Q ss_pred EEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHHhhcceE
Q 000224 561 QIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGLG 639 (1833)
Q Consensus 561 ~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~ig 639 (1833)
+++||++.|++. .+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +....++.+|
T Consensus 1 ~~~~l~~~~~~~--~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (211)
T cd03225 1 ELKNLSFSYPDG--ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVG 78 (211)
T ss_pred CceeEEEecCCC--CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhce
Confidence 368999999531 1469999999999999999999999999999999999999999999999998753 3445678899
Q ss_pred EEccCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEE
Q 000224 640 VCPQYDI-LFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVIL 718 (1833)
Q Consensus 640 ~~~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliL 718 (1833)
|+||++. .++.+|++||+.+.....+......++++.++++.+||.+..++++++||||||||++|||||+.+|++|||
T Consensus 79 ~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llll 158 (211)
T cd03225 79 LVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLL 158 (211)
T ss_pred EEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999974 356789999998876555555555667889999999999888999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCE
Q 000224 719 DEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGS 770 (1833)
Q Consensus 719 DEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~ 770 (1833)
||||+|||+.+++++++.|++++ +|+|||++||+++++..+||||++|++|+
T Consensus 159 DEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 159 DEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999986 48999999999999999999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=407.95 Aligned_cols=228 Identities=19% Similarity=0.329 Sum_probs=199.8
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCC----CCcceEEEcCccCCc-cH--
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP----PTTGDALVFGKNITA-DM-- 631 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~----p~~G~i~i~g~~i~~-~~-- 631 (1833)
.++++||++.|+.+.+.+.||+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.. ..
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 48999999999764333579999999999999999999999999999999999998 489999999999853 22
Q ss_pred -HHh-hcceEEEccCC--CCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCc---ccccccCCCChhHHHHH
Q 000224 632 -DEI-RKGLGVCPQYD--ILFPELTVREHLEMFAVLK-GVKEELLESVVAEMVDEVGLAD---KVNIVVRALSGGMKRKL 703 (1833)
Q Consensus 632 -~~~-r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~---~~~~~~~~LSgGqkqrl 703 (1833)
.+. ++.|||+||++ .+++.+|+.+++....... +...++.++++.++|+.+||.+ ..++.+++|||||||||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv 162 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV 162 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence 222 24799999998 5889999999987655443 5566667788999999999974 46889999999999999
Q ss_pred HHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 704 SLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 704 ~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~--~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
+|||||+.+|++|||||||+|||+.++++++++|++++ .|.|+|++|||++++..+||||++|.+|++++.|++.++.
T Consensus 163 ~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 163 MIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999999985 3899999999999999999999999999999999998886
Q ss_pred hhhCC
Q 000224 782 HQYGV 786 (1833)
Q Consensus 782 ~~~g~ 786 (1833)
+....
T Consensus 243 ~~p~h 247 (326)
T PRK11022 243 RAPRH 247 (326)
T ss_pred hCCCC
Confidence 54433
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=392.62 Aligned_cols=219 Identities=29% Similarity=0.418 Sum_probs=193.6
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-hH-Hh
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-PK-AA 1541 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~-~~ 1541 (1833)
+|+++|+++.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... .. ..
T Consensus 2 ~i~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 75 (242)
T TIGR03411 2 ILYLEGLSVSFDG------FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIA 75 (242)
T ss_pred eEEEEeeEEEcCC------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHH
Confidence 6899999999953 4699999999999999999999999999999999999999999999999987542 22 23
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHHHHc--------CCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHH
Q 000224 1542 RRLIGYCPQFDALLEYLTVQEHLELYARIK--------GVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVA 1613 (1833)
Q Consensus 1542 ~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~--------g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA 1613 (1833)
++.+||+||++.+++.+|++||+.+..... +...+..++++.++++.+++.+..++++++||||||||++||
T Consensus 76 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~la 155 (242)
T TIGR03411 76 RAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIG 155 (242)
T ss_pred hcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 457999999999999999999998754311 112233455678899999999888999999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHH
Q 000224 1614 IAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1691 (1833)
Q Consensus 1614 ~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~ 1691 (1833)
|||+.+|++|||||||+|||+.+++.+++.|++++ + + .|||++||+++++.++|||+++|++|++++.|+++++.
T Consensus 156 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~-~-~-~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 156 MLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLA-G-K-HSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQ 230 (242)
T ss_pred HHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHh-c-C-CEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence 99999999999999999999999999999999985 3 3 58999999999999999999999999999999988875
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=386.90 Aligned_cols=208 Identities=32% Similarity=0.537 Sum_probs=183.4
Q ss_pred EEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhccce
Q 000224 1467 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARRLI 1545 (1833)
Q Consensus 1467 v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~~~~i 1545 (1833)
++|++|.|++. .+.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .....+++|
T Consensus 2 ~~~l~~~~~~~----~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 77 (211)
T cd03225 2 LKNLSFSYPDG----ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKV 77 (211)
T ss_pred ceeEEEecCCC----CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhc
Confidence 68999999631 1469999999999999999999999999999999999999999999999998864 234567789
Q ss_pred EEEecCCC-CCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000224 1546 GYCPQFDA-LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1624 (1833)
Q Consensus 1546 g~~pQ~~~-l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~vll 1624 (1833)
||+||++. .++.+|++||+.+.....+......++.+.++++.+++.+..++++.+|||||||||+|||||+.+|++||
T Consensus 78 ~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 157 (211)
T cd03225 78 GLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILL 157 (211)
T ss_pred eEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999974 35678999999876555554444455677889999999888899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCE
Q 000224 1625 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQ 1680 (1833)
Q Consensus 1625 LDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~ 1680 (1833)
|||||+|||+.+++.+++.|+++++ +| +|||++||++++++.+|||+++|++|+
T Consensus 158 lDEPt~~LD~~~~~~~~~~l~~~~~-~~-~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 158 LDEPTAGLDPAGRRELLELLKKLKA-EG-KTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999864 34 689999999999999999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=393.42 Aligned_cols=221 Identities=33% Similarity=0.533 Sum_probs=196.3
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-h-HHh
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-P-KAA 1541 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~-~-~~~ 1541 (1833)
+++++|++|+|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++... . ...
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (241)
T PRK10895 3 TLTAKNLAKAYKG------RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARA 76 (241)
T ss_pred eEEEeCcEEEeCC------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 6899999999953 4699999999999999999999999999999999999999999999999988642 2 234
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHHHHc-CCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCC
Q 000224 1542 RRLIGYCPQFDALLEYLTVQEHLELYARIK-GVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDP 1620 (1833)
Q Consensus 1542 ~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~-g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p 1620 (1833)
++.+||+||++.+++.+|++||+.+..... +....+.++.+.++++.+++.+..++++++|||||||||+||+||+.+|
T Consensus 77 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 156 (241)
T PRK10895 77 RRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANP 156 (241)
T ss_pred HhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCC
Confidence 678999999999998899999998765433 2333344567888999999988889999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1621 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1621 ~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
++|||||||+|||+.+++.+++.|++++ ++| .|||++||+++++..+|||+++|++|++++.|+++++..
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~-~~g-~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 157 KFILLDEPFAGVDPISVIDIKRIIEHLR-DSG-LGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHH-hcC-CEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 9999999999999999999999999986 344 589999999999999999999999999999999887753
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=406.32 Aligned_cols=227 Identities=21% Similarity=0.293 Sum_probs=197.1
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC----CCceEEEEcCeeCCCC-h
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY----PTDGTAFIFGKDIRSD-P 1538 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~----p~~G~i~i~G~~i~~~-~ 1538 (1833)
+|+++||++.|+... +...||+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++... .
T Consensus 3 ~L~v~~l~~~~~~~~--~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~ 80 (326)
T PRK11022 3 LLNVDKLSVHFGDES--APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE 80 (326)
T ss_pred eEEEeCeEEEECCCC--ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCH
Confidence 689999999996421 22469999999999999999999999999999999999998 4899999999998652 2
Q ss_pred HH----hccceEEEecCC--CCCCCCCHHHHHHHHHHHc-CCChhhHHHHHHHHHHHcCCcc---ccCCCCCCCChhHHH
Q 000224 1539 KA----ARRLIGYCPQFD--ALLEYLTVQEHLELYARIK-GVAEYRMDDVVMEKLVEFDLLK---HAKKPSFTLSGGNKR 1608 (1833)
Q Consensus 1539 ~~----~~~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~~-g~~~~~~~~~~~~~l~~~~L~~---~~~~~~~~LSgG~kq 1608 (1833)
.. .++.|||+||++ .+.+.+|+.+++....... +...++.++++.++++.+||.+ ..++++++|||||||
T Consensus 81 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~Q 160 (326)
T PRK11022 81 KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ 160 (326)
T ss_pred HHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHH
Confidence 22 224799999997 5788999998886654433 4555556678899999999964 468999999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChh
Q 000224 1609 KLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1688 (1833)
Q Consensus 1609 rl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~ 1688 (1833)
||+||+||+.+|++||+||||+|||+.+++.++++|++++++.| .|||++|||++++..+||||++|.+|++++.|+++
T Consensus 161 Rv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g-~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~ 239 (326)
T PRK11022 161 RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKEN-MALVLITHDLALVAEAAHKIIVMYAGQVVETGKAH 239 (326)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999975444 68999999999999999999999999999999999
Q ss_pred HHHhh
Q 000224 1689 HLKTR 1693 (1833)
Q Consensus 1689 ~l~~~ 1693 (1833)
++.+.
T Consensus 240 ~~~~~ 244 (326)
T PRK11022 240 DIFRA 244 (326)
T ss_pred HHhhC
Confidence 98754
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=387.57 Aligned_cols=215 Identities=25% Similarity=0.440 Sum_probs=186.6
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-hH---
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-PK--- 1539 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~--- 1539 (1833)
+|+++|+++.|+++. +.+.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ..
T Consensus 1 ~l~~~~v~~~~~~~~--~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (221)
T TIGR02211 1 LLKCENLGKRYQEGK--LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERA 78 (221)
T ss_pred CEEEEeeeEEccCCC--cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHH
Confidence 378999999996421 124699999999999999999999999999999999999999999999999988542 21
Q ss_pred Hhc-cceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhc
Q 000224 1540 AAR-RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIG 1618 (1833)
Q Consensus 1540 ~~~-~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~ 1618 (1833)
..+ +++||+||++.+++.+|++||+.+....++....+..+.+.++++.+++.+..++++.+||||||||++|||||+.
T Consensus 79 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 158 (221)
T TIGR02211 79 KLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVN 158 (221)
T ss_pred HHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhC
Confidence 123 6799999999999889999999876554444444445667889999999888899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEE
Q 000224 1619 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLR 1682 (1833)
Q Consensus 1619 ~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~ 1682 (1833)
+|++|||||||+|||+.+++.+++.|++++++.| .|||++||++++++. |||+++|++|+++
T Consensus 159 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tii~~tH~~~~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 159 QPSLVLADEPTGNLDNNNAKIIFDLMLELNRELN-TSFLVVTHDLELAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence 9999999999999999999999999999864434 589999999999975 8999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=399.48 Aligned_cols=218 Identities=23% Similarity=0.343 Sum_probs=195.8
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc---cHHHhhc
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA---DMDEIRK 636 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~---~~~~~r~ 636 (1833)
|+++||++.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .....|+
T Consensus 2 l~~~~l~~~~~~----~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 77 (271)
T PRK13638 2 LATSDLWFRYQD----EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQ 77 (271)
T ss_pred eEEEEEEEEcCC----cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHh
Confidence 789999999953 359999999999999999999999999999999999999999999999998742 2345677
Q ss_pred ceEEEccCCCC-CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcE
Q 000224 637 GLGVCPQYDIL-FPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 715 (1833)
Q Consensus 637 ~ig~~~Q~~~l-~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 715 (1833)
.+||+||++.+ +...|+.||+.+.....+....+..++++++++.+|+.+..++++.+||||||||++|||||+.+|++
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~l 157 (271)
T PRK13638 78 QVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARY 157 (271)
T ss_pred heEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCE
Confidence 89999999753 34568999998876666666666677889999999999888999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 716 VILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 716 liLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
|||||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|++++.|++.++.
T Consensus 158 llLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 158 LLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999985 5899999999999999999999999999999999987764
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=406.00 Aligned_cols=231 Identities=25% Similarity=0.427 Sum_probs=203.0
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCC---cceEEEcCccCCc-c---
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPT---TGDALVFGKNITA-D--- 630 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~---~G~i~i~g~~i~~-~--- 630 (1833)
..++++||++.|+.+.+...+|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.++.. .
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~ 90 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKE 90 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHH
Confidence 57999999999975444567999999999999999999999999999999999999996 9999999999853 2
Q ss_pred HHHhh-cceEEEccCC--CCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCcc---cccccCCCChhHHHHH
Q 000224 631 MDEIR-KGLGVCPQYD--ILFPELTVREHLEMFAVLK-GVKEELLESVVAEMVDEVGLADK---VNIVVRALSGGMKRKL 703 (1833)
Q Consensus 631 ~~~~r-~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~---~~~~~~~LSgGqkqrl 703 (1833)
....| +.|||+||++ .+++.+|+.+++....... +.+.++..+++.++++.+||.+. .++.+++||||||||+
T Consensus 91 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv 170 (330)
T PRK09473 91 LNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRV 170 (330)
T ss_pred HHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHH
Confidence 22334 5799999998 6889999999998765544 45666777889999999999753 4789999999999999
Q ss_pred HHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 704 SLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 704 ~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~--g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
+|||||+.+|++||+||||+|||+.++++++++|+++++ |.|+|++|||++++..+||||++|.+|++++.|++.++.
T Consensus 171 ~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 171 MIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVF 250 (330)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999999853 899999999999999999999999999999999998887
Q ss_pred hhhCCcE
Q 000224 782 HQYGVGY 788 (1833)
Q Consensus 782 ~~~g~gy 788 (1833)
+.....|
T Consensus 251 ~~p~~py 257 (330)
T PRK09473 251 YQPSHPY 257 (330)
T ss_pred hCCCCHH
Confidence 6544333
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=400.70 Aligned_cols=224 Identities=27% Similarity=0.403 Sum_probs=200.7
Q ss_pred ceEEEEeeEEEecCCC--CcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc--cHHH
Q 000224 558 RCIQIRKLHKVYATKR--GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA--DMDE 633 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~--~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~--~~~~ 633 (1833)
..++++||+|+|++.. +.+.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ....
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 3689999999996432 13469999999999999999999999999999999999999999999999998853 2345
Q ss_pred hhcceEEEccCCC--CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhC
Q 000224 634 IRKGLGVCPQYDI--LFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIG 711 (1833)
Q Consensus 634 ~r~~ig~~~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~ 711 (1833)
.++.+|||||++. ++ ..||.||+.+.....+.+..+.+++++++++.+||.+..++++.+||||||||++|||||+.
T Consensus 83 ~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~ 161 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAM 161 (280)
T ss_pred HhhheEEEecChhhhhc-cccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 6788999999974 44 46999999987766677677777889999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q 000224 712 DSKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 783 (1833)
Q Consensus 712 ~p~vliLDEPtsgLD~~~r~~l~~~l~~~~--~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~ 783 (1833)
+|++|||||||+|||+.+++.++++|++++ .|+|||++||+++++.. |||+++|++|++++.|++.++...
T Consensus 162 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 162 RPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999984 38999999999999986 999999999999999999887643
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=386.99 Aligned_cols=208 Identities=31% Similarity=0.567 Sum_probs=188.6
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc---cHHHhhc
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA---DMDEIRK 636 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~---~~~~~r~ 636 (1833)
++++||++.|++ +.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....++
T Consensus 1 l~~~~l~~~~~~----~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (213)
T cd03262 1 IEIKNLHKSFGD----FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQ 76 (213)
T ss_pred CEEEEEEEEECC----eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHh
Confidence 468999999953 469999999999999999999999999999999999999999999999998742 3345678
Q ss_pred ceEEEccCCCCCCCCCHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcE
Q 000224 637 GLGVCPQYDILFPELTVREHLEMFAV-LKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 715 (1833)
Q Consensus 637 ~ig~~~Q~~~l~~~lTv~e~l~~~~~-~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 715 (1833)
.+||+||++.+++.+|+.||+.++.. .++...++.++++.++++.+|+.+..++++.+||||||||++||+||+.+|++
T Consensus 77 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 156 (213)
T cd03262 77 KVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKV 156 (213)
T ss_pred cceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCE
Confidence 89999999999999999999988643 34555556677889999999999888999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEE
Q 000224 716 VILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSL 771 (1833)
Q Consensus 716 liLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l 771 (1833)
|||||||+|||+.+++.++++|++++ +|+|||++||+++++..+||||++|++|++
T Consensus 157 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 157 MLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999986 589999999999999999999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=394.92 Aligned_cols=210 Identities=26% Similarity=0.433 Sum_probs=191.3
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcceE
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 639 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 639 (1833)
++++||++.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+..+|
T Consensus 2 l~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~----~~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG----KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEG----PGAERG 73 (255)
T ss_pred EEEEEEEEEeCC----eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC----CCCcEE
Confidence 789999999953 469999999999999999999999999999999999999999999999998753 224589
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEEe
Q 000224 640 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 719 (1833)
Q Consensus 640 ~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 719 (1833)
|+||++.+++.+||.||+.+.....+....+.++++.++++.+||.+..++++.+||||||||++|||||+.+|++||||
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLD 153 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLD 153 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999999988766666666666778999999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHH-h-CCcEEEEEcCCHHHHHhhcCEEEEee--CCEEEeecCH
Q 000224 720 EPTSGMDPYSMRLTWQLIKKI-K-KGRIILLTTHSMDEAEELGDRIAIMA--NGSLKCCGSS 777 (1833)
Q Consensus 720 EPtsgLD~~~r~~l~~~l~~~-~-~g~tiil~tH~~~e~~~l~Dri~im~--~G~l~~~G~~ 777 (1833)
|||+|||+.+++.++++|+++ + +|+|||++||+++++..+||||++|+ +|++++.++.
T Consensus 154 EPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 154 EPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999999999997 4 48999999999999999999999998 5999887764
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=399.25 Aligned_cols=225 Identities=25% Similarity=0.423 Sum_probs=199.5
Q ss_pred cceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc---eEEEEcCeeCCC-C
Q 000224 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD---GTAFIFGKDIRS-D 1537 (1833)
Q Consensus 1462 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~---G~i~i~G~~i~~-~ 1537 (1833)
+.+|+++|++|.|++. .+.+++++||+|++||++||+||||||||||+++|+|+++|++ |+|.++|.++.. .
T Consensus 3 ~~~l~i~~l~~~~~~~----~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~ 78 (282)
T PRK13640 3 DNIVEFKHVSFTYPDS----KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKT 78 (282)
T ss_pred CceEEEEEEEEEcCCC----CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCC
Confidence 3579999999999632 2459999999999999999999999999999999999999998 899999999865 3
Q ss_pred hHHhccceEEEecCCC-CCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHH
Q 000224 1538 PKAARRLIGYCPQFDA-LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAM 1616 (1833)
Q Consensus 1538 ~~~~~~~ig~~pQ~~~-l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al 1616 (1833)
....++++||+||++. +++..|++||+.+.....+.+.++..+++.++++.++|.+..++++++||||||||++||+||
T Consensus 79 ~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral 158 (282)
T PRK13640 79 VWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGIL 158 (282)
T ss_pred HHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 3456778999999974 566789999998765555666666667788999999999889999999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1617 IGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1617 ~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
+.+|++|||||||+|||+.+++.+++.|++++++.| +|||++||++++++ .|||+++|++|++++.|+++++..
T Consensus 159 ~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g-~tvli~tH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 159 AVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNN-LTVISITHDIDEAN-MADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHH-hCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999864434 68999999999996 799999999999999999988754
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-41 Score=397.64 Aligned_cols=222 Identities=27% Similarity=0.480 Sum_probs=194.7
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC---ChHH
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS---DPKA 1540 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~---~~~~ 1540 (1833)
+|+++|++++|++ .+.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....
T Consensus 1 ~l~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (275)
T PRK13639 1 ILETRDLKYSYPD-----GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLE 75 (275)
T ss_pred CEEEEEEEEEeCC-----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHH
Confidence 4789999999963 2459999999999999999999999999999999999999999999999999852 2234
Q ss_pred hccceEEEecCCC-CCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcC
Q 000224 1541 ARRLIGYCPQFDA-LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1619 (1833)
Q Consensus 1541 ~~~~ig~~pQ~~~-l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~ 1619 (1833)
.++.|||+||++. .+..+|+.||+.+.....+...++..+++.++++.++|.+..++++++||||||||++||+||+.+
T Consensus 76 ~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~ 155 (275)
T PRK13639 76 VRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMK 155 (275)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 6778999999963 233479999998654333444445556788899999999889999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1620 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1620 p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
|++|||||||+|||+.+++.+++.|+++++ +| +|||++||+++++..+|||+++|++|++++.|+++++..
T Consensus 156 p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~-~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 156 PEIIVLDEPTSGLDPMGASQIMKLLYDLNK-EG-ITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CC-CEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999864 44 689999999999999999999999999999999998754
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=394.43 Aligned_cols=219 Identities=28% Similarity=0.422 Sum_probs=195.1
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCC-----CCcceEEEcCccCCc---
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP-----PTTGDALVFGKNITA--- 629 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~g~~i~~--- 629 (1833)
+.|+++||++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 5 ~~l~~~~l~~~~~~----~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 80 (253)
T PRK14242 5 PKMEARGLSFFYGD----FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHV 80 (253)
T ss_pred cEEEEeeeEEEECC----eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccccc
Confidence 57999999999953 359999999999999999999999999999999999974 689999999998753
Q ss_pred cHHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCCc----ccccccCCCChhHHHHHH
Q 000224 630 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV-KEELLESVVAEMVDEVGLAD----KVNIVVRALSGGMKRKLS 704 (1833)
Q Consensus 630 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~v~~~l~~~~L~~----~~~~~~~~LSgGqkqrl~ 704 (1833)
+....|+.+||+||++.+++ .||+||+.+.....+. ..+..+++++++++.+|+.+ ..++++.+|||||||||+
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~ 159 (253)
T PRK14242 81 DVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLC 159 (253)
T ss_pred CHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHH
Confidence 23456788999999998888 5999999887655554 23445678899999999853 468889999999999999
Q ss_pred HHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 705 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 705 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
|||||+.+|++|||||||+|||+.+++.++++|+++++++|||++||+++++..+||||++|++|++++.|++.++.
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 160 IARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999977899999999999999999999999999999999987764
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=392.32 Aligned_cols=218 Identities=25% Similarity=0.409 Sum_probs=196.3
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-------cH
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-------DM 631 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-------~~ 631 (1833)
.++++|+++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..
T Consensus 2 ~l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (242)
T PRK11124 2 SIQLNGINCFYGA----HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAI 77 (242)
T ss_pred EEEEEeeEEEECC----eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhH
Confidence 4789999999953 359999999999999999999999999999999999999999999999998631 23
Q ss_pred HHhhcceEEEccCCCCCCCCCHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHh
Q 000224 632 DEIRKGLGVCPQYDILFPELTVREHLEM-FAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALI 710 (1833)
Q Consensus 632 ~~~r~~ig~~~Q~~~l~~~lTv~e~l~~-~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~ 710 (1833)
...++.+||+||++.+++.+|+.||+.+ .....+...++..+++.++++.+|+.+..++.+.+||||||||++|||||+
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~ 157 (242)
T PRK11124 78 RELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALM 157 (242)
T ss_pred HHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh
Confidence 4567789999999999999999999975 334455555556678899999999998889999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q 000224 711 GDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFL 780 (1833)
Q Consensus 711 ~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~L 780 (1833)
.+|+++||||||+|||+.+++.++++|++++ +|+|+|++||+++++..+|||+++|++|+++..|++.++
T Consensus 158 ~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 158 MEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred cCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999999999986 489999999999999999999999999999999987654
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-41 Score=393.81 Aligned_cols=222 Identities=22% Similarity=0.398 Sum_probs=196.0
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC------
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS------ 1536 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~------ 1536 (1833)
..++++||++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++..
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~ 77 (257)
T PRK10619 4 NKLNVIDLHKRYGE------HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDG 77 (257)
T ss_pred ccEEEeeeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccc
Confidence 46899999999953 469999999999999999999999999999999999999999999999998742
Q ss_pred --------ChHHhccceEEEecCCCCCCCCCHHHHHHHHH-HHcCCChhhHHHHHHHHHHHcCCccc-cCCCCCCCChhH
Q 000224 1537 --------DPKAARRLIGYCPQFDALLEYLTVQEHLELYA-RIKGVAEYRMDDVVMEKLVEFDLLKH-AKKPSFTLSGGN 1606 (1833)
Q Consensus 1537 --------~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~-~~~g~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgG~ 1606 (1833)
.....++++||+||++.+++.+|++||+.+.. ...+....+.++++.++++.+|+.+. .++++.+|||||
T Consensus 78 ~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~ 157 (257)
T PRK10619 78 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQ 157 (257)
T ss_pred ccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHH
Confidence 12345678999999999999899999998643 23344444556678889999999876 488999999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecC
Q 000224 1607 KRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS 1686 (1833)
Q Consensus 1607 kqrl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~ 1686 (1833)
|||++|||||+.+|++|||||||+|||+.+++.+++.|+++++ +| +|||++|||++++..+||||++|++|++++.|+
T Consensus 158 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g-~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 235 (257)
T PRK10619 158 QQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EG-KTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGA 235 (257)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cC-CEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999863 44 689999999999999999999999999999999
Q ss_pred hhHHHh
Q 000224 1687 PQHLKT 1692 (1833)
Q Consensus 1687 ~~~l~~ 1692 (1833)
++++.+
T Consensus 236 ~~~~~~ 241 (257)
T PRK10619 236 PEQLFG 241 (257)
T ss_pred HHHhhh
Confidence 888754
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=387.48 Aligned_cols=218 Identities=25% Similarity=0.405 Sum_probs=189.6
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-hH--
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-PK-- 1539 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~-- 1539 (1833)
++|+++|++++|+++. ....+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++... ..
T Consensus 5 ~~l~~~~l~~~~~~~~--~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~ 82 (228)
T PRK10584 5 NIVEVHHLKKSVGQGE--HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEAR 82 (228)
T ss_pred ceEEEeeeEEEccCCC--cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHH
Confidence 5799999999996421 013589999999999999999999999999999999999999999999999988642 22
Q ss_pred -Hh-ccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHh
Q 000224 1540 -AA-RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMI 1617 (1833)
Q Consensus 1540 -~~-~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~ 1617 (1833)
.. ++.+||+||++.+++.+|+.||+.+....++.+..+.++++.++++.+++.+..++++.+||||||||++||+||+
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~ 162 (228)
T PRK10584 83 AKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFN 162 (228)
T ss_pred HHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHh
Confidence 12 3579999999999998999999987655555544455667889999999998889999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEe
Q 000224 1618 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCI 1684 (1833)
Q Consensus 1618 ~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~ 1684 (1833)
.+|++|||||||+|||+.+++.+++.|++++++.| +|||++|||+++++. |||+++|++|++++.
T Consensus 163 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH~~~~~~~-~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 163 GRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHG-TTLILVTHDLQLAAR-CDRRLRLVNGQLQEE 227 (228)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHh-CCEEEEEECCEEEec
Confidence 99999999999999999999999999999864434 589999999999865 999999999998753
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-41 Score=399.60 Aligned_cols=222 Identities=31% Similarity=0.448 Sum_probs=196.8
Q ss_pred eEEEEeeEEEecCCCC-cccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-----cHH
Q 000224 559 CIQIRKLHKVYATKRG-NCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-----DMD 632 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~-~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-----~~~ 632 (1833)
.++++||++.|++... .+.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 3789999999964211 1369999999999999999999999999999999999999999999999998753 234
Q ss_pred HhhcceEEEccCC--CCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-cccccccCCCChhHHHHHHHHHHH
Q 000224 633 EIRKGLGVCPQYD--ILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA-DKVNIVVRALSGGMKRKLSLGIAL 709 (1833)
Q Consensus 633 ~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSgGqkqrl~lA~al 709 (1833)
..|+.|||+||++ .+++ .||+||+.+.....+.+.++.+++++++++.+||. ...++++.+||||||||++|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al 160 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGIL 160 (280)
T ss_pred HHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 5678899999997 4555 69999999876555666666677889999999997 467999999999999999999999
Q ss_pred hCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 710 IGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 710 ~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
+.+|++|||||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|++++.|++.++.
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 161 AMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999986 4899999999999999999999999999999999987764
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=394.47 Aligned_cols=220 Identities=29% Similarity=0.458 Sum_probs=196.4
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCC-----CcceEEEcCccCCc---
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP-----TTGDALVFGKNITA--- 629 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~g~~i~~--- 629 (1833)
..++++|+++.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++..
T Consensus 6 ~~l~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (254)
T PRK14273 6 AIIETENLNLFYTD----FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNF 81 (254)
T ss_pred ceEEEeeeEEEeCC----ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccc
Confidence 46999999999953 3599999999999999999999999999999999999997 59999999998742
Q ss_pred cHHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCC----CcccccccCCCChhHHHHHH
Q 000224 630 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV-KEELLESVVAEMVDEVGL----ADKVNIVVRALSGGMKRKLS 704 (1833)
Q Consensus 630 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~v~~~l~~~~L----~~~~~~~~~~LSgGqkqrl~ 704 (1833)
.....|+.+||+||++.+++ +||+||+.+.....+. .....++++.++++.+++ .+..++++++||||||||++
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~ 160 (254)
T PRK14273 82 DILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLC 160 (254)
T ss_pred cHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHH
Confidence 23456788999999998885 8999999987655443 344566788999999998 34578899999999999999
Q ss_pred HHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 705 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 705 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
|||||+.+|++|||||||+|||+.+++.++++|+++++++|||++||+++++..+||||++|++|++++.|++.++.+
T Consensus 161 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 238 (254)
T PRK14273 161 IARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFF 238 (254)
T ss_pred HHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999999999878999999999999999999999999999999999888754
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=393.90 Aligned_cols=221 Identities=29% Similarity=0.453 Sum_probs=196.7
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCC-----CcceEEEcCccCCc---
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP-----TTGDALVFGKNITA--- 629 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~g~~i~~--- 629 (1833)
..|+++||++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++..
T Consensus 3 ~~l~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 78 (253)
T PRK14267 3 FAIETVNLRVYYGS----NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78 (253)
T ss_pred ceEEEEeEEEEeCC----eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 36899999999953 4599999999999999999999999999999999999997 49999999998851
Q ss_pred cHHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHH
Q 000224 630 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV--KEELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKL 703 (1833)
Q Consensus 630 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~--~~~~~~~~v~~~l~~~~L~----~~~~~~~~~LSgGqkqrl 703 (1833)
+....|+++||+||++.+++.+||.||+.+....++. +.+..++++.++++.+|+. +..++++.+||||||||+
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 158 (253)
T PRK14267 79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRL 158 (253)
T ss_pred ChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHH
Confidence 3345677899999999999999999999887654443 3445567788999999984 356889999999999999
Q ss_pred HHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 704 SLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 704 ~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
+|||||+.+|+++||||||+|||+.++++++++|+++++++|||++||+++++..+||||++|++|++++.|++.++..
T Consensus 159 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (253)
T PRK14267 159 VIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFE 237 (253)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999999778999999999999999999999999999999999877643
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-41 Score=393.02 Aligned_cols=219 Identities=26% Similarity=0.396 Sum_probs=196.4
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCC-----CcceEEEcCccCCc-cHH
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP-----TTGDALVFGKNITA-DMD 632 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~g~~i~~-~~~ 632 (1833)
.++++||++.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. +..
T Consensus 3 ~l~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 78 (250)
T PRK14247 3 KIEIRDLKVSFGQ----VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVI 78 (250)
T ss_pred eEEEEeeEEEECC----eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHH
Confidence 4899999999953 4699999999999999999999999999999999999984 79999999998853 344
Q ss_pred HhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHcCCCc----ccccccCCCChhHHHHHHHH
Q 000224 633 EIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV--KEELLESVVAEMVDEVGLAD----KVNIVVRALSGGMKRKLSLG 706 (1833)
Q Consensus 633 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~--~~~~~~~~v~~~l~~~~L~~----~~~~~~~~LSgGqkqrl~lA 706 (1833)
..|+.+||+||++.+++.+||.||+.+.....+. +.++.++++.++++.+||.+ ..++.+.+||||||||++||
T Consensus 79 ~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la 158 (250)
T PRK14247 79 ELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIA 158 (250)
T ss_pred HHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHH
Confidence 5678899999999888899999999886554432 34455678899999999853 56889999999999999999
Q ss_pred HHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 707 IALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 707 ~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
|||+.+|+++||||||+|||+.++++++++|+++++|+|+|++||+++++..+|||+++|++|++++.|++.++.
T Consensus 159 ral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 159 RALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 999999999999999999999999999999999977899999999999999999999999999999999987764
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=389.27 Aligned_cols=216 Identities=27% Similarity=0.443 Sum_probs=186.6
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCcc----HHHhh
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD----MDEIR 635 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~----~~~~r 635 (1833)
|+++||++.|+++++...+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996431113699999999999999999999999999999999999999999999999988542 24567
Q ss_pred cceEEEccCC--CCCCCCCHHHHHHHHHHhcCCCH-HHHHHH-HHHHHHHcCCC-cccccccCCCChhHHHHHHHHHHHh
Q 000224 636 KGLGVCPQYD--ILFPELTVREHLEMFAVLKGVKE-ELLESV-VAEMVDEVGLA-DKVNIVVRALSGGMKRKLSLGIALI 710 (1833)
Q Consensus 636 ~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~~~~~-~~~~~~-v~~~l~~~~L~-~~~~~~~~~LSgGqkqrl~lA~al~ 710 (1833)
+.+||+||++ .+++.+||+||+.+.....+... ++..++ ++++++.+++. +..++++.+||||||||++|||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~ 161 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALA 161 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHh
Confidence 8899999998 46778999999987655443222 222223 36899999996 5789999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeec
Q 000224 711 GDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 775 (1833)
Q Consensus 711 ~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G 775 (1833)
.+|++|||||||+|||+.+++.++++|++++ + |+|||++||+++++..+||||++|++|++++.|
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 162 LNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred cCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999999999985 3 899999999999999999999999999998654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=390.76 Aligned_cols=204 Identities=32% Similarity=0.448 Sum_probs=182.4
Q ss_pred cccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccceEEEe-cCCCCCCCCC
Q 000224 1481 DAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCP-QFDALLEYLT 1559 (1833)
Q Consensus 1481 ~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~~~ig~~p-Q~~~l~~~lT 1559 (1833)
+.+.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.......++++||+| |++.+++.+|
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~t 111 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLP 111 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCc
Confidence 345799999999999999999999999999999999999999999999999987544445677899998 5577888899
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Q 000224 1560 VQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF 1639 (1833)
Q Consensus 1560 v~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~vllLDEPTsgLD~~~~~~ 1639 (1833)
++||+.+....++....+..+.+.++++.+++.+..++++.+||||||||++||+||+.+|++|||||||+|||+.+++.
T Consensus 112 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~ 191 (236)
T cd03267 112 VIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQEN 191 (236)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence 99999887766666555556677888999999888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEec
Q 000224 1640 MWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1685 (1833)
Q Consensus 1640 l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g 1685 (1833)
+.+.|++++++++ +|||++||++++++.+|||+++|.+|++++.|
T Consensus 192 l~~~l~~~~~~~~-~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 192 IRNFLKEYNRERG-TTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHhcCC-CEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999864434 68999999999999999999999999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=394.22 Aligned_cols=219 Identities=27% Similarity=0.412 Sum_probs=195.4
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHHhhcc
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 637 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~ 637 (1833)
.|+++||+|.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .....++.
T Consensus 2 ~l~~~~l~~~~~~----~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (258)
T PRK13548 2 MLEARNLSVRLGG----RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARR 77 (258)
T ss_pred eEEEEeEEEEeCC----eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhh
Confidence 4889999999953 469999999999999999999999999999999999999999999999998753 33445678
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHh------C
Q 000224 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALI------G 711 (1833)
Q Consensus 638 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~------~ 711 (1833)
+||+||++.+++.+||+||+.+.....+...+..+++++++++.+||.+..++.+.+|||||||||+||+||+ .
T Consensus 78 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~ 157 (258)
T PRK13548 78 RAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDG 157 (258)
T ss_pred eEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCC
Confidence 9999999988788999999988654333333445567899999999998889999999999999999999999 5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 712 DSKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 712 ~p~vliLDEPtsgLD~~~r~~l~~~l~~~~--~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
+|++|||||||+|||+.+++.+.++|++++ +|+|||++||+++++..+||||++|++|+++..|++.++.
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 158 PPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 999999999999999999999999999985 4899999999999999999999999999999999876653
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=396.27 Aligned_cols=223 Identities=28% Similarity=0.438 Sum_probs=195.3
Q ss_pred cceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHH
Q 000224 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKA 1540 (1833)
Q Consensus 1462 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~ 1540 (1833)
+.+|+++|+++.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....
T Consensus 9 ~~~l~i~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 82 (265)
T PRK10575 9 DTTFALRNVSFRVPG------RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKA 82 (265)
T ss_pred CceEEEeeEEEEECC------EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHH
Confidence 457999999999953 469999999999999999999999999999999999999999999999998754 3445
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHH-HcC---CChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHH
Q 000224 1541 ARRLIGYCPQFDALLEYLTVQEHLELYAR-IKG---VAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAM 1616 (1833)
Q Consensus 1541 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~-~~g---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al 1616 (1833)
.++.+||+||++.+++.+|+.||+.+... ..+ ......++++.++++.+++.+..++++++|||||||||+||+||
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral 162 (265)
T PRK10575 83 FARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLV 162 (265)
T ss_pred HhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 66789999999888888999999986421 111 11223345678899999998888999999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHH
Q 000224 1617 IGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1691 (1833)
Q Consensus 1617 ~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~ 1691 (1833)
+.+|+||||||||+|||+.+++.+++.|++++++.| +|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 163 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~-~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 163 AQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERG-LTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 999999999999999999999999999999864434 68999999999999999999999999999999887764
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-41 Score=392.75 Aligned_cols=221 Identities=24% Similarity=0.427 Sum_probs=195.2
Q ss_pred cceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEEcCeeCCC
Q 000224 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP-----TDGTAFIFGKDIRS 1536 (1833)
Q Consensus 1462 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~G~~i~~ 1536 (1833)
.++|+++|+++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++..
T Consensus 10 ~~~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~ 83 (258)
T PRK14268 10 QPQIKVENLNLWYGE------KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYE 83 (258)
T ss_pred ceeEEEeeeEEEeCC------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccc
Confidence 357999999999952 4599999999999999999999999999999999999985 89999999998753
Q ss_pred C---hHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHHH
Q 000224 1537 D---PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKRK 1609 (1833)
Q Consensus 1537 ~---~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgG~kqr 1609 (1833)
. ....++.+||+||++.+++ +|++||+.+.....+.+..+..+.+.++++.+++. +..++++.+||||||||
T Consensus 84 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qr 162 (258)
T PRK14268 84 PDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQR 162 (258)
T ss_pred ccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHH
Confidence 2 2345678999999988887 89999998866555655544556678899999883 45788999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhH
Q 000224 1610 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1689 (1833)
Q Consensus 1610 l~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~ 1689 (1833)
|+|||||+.+|++|||||||+|||+.+++.+++.|++++ + + +|||++||+++++..+|||+++|++|++++.|++++
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~-~-~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 239 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK-K-D-YTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQ 239 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-h-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999984 3 4 689999999999999999999999999999999988
Q ss_pred HHh
Q 000224 1690 LKT 1692 (1833)
Q Consensus 1690 l~~ 1692 (1833)
+.+
T Consensus 240 ~~~ 242 (258)
T PRK14268 240 IFH 242 (258)
T ss_pred Hhc
Confidence 754
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=402.76 Aligned_cols=229 Identities=24% Similarity=0.407 Sum_probs=199.1
Q ss_pred cceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceEEEEcCeeCCCC-
Q 000224 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT---DGTAFIFGKDIRSD- 1537 (1833)
Q Consensus 1462 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~---~G~i~i~G~~i~~~- 1537 (1833)
+++|+++||++.|+.+. +...+|+||||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.++...
T Consensus 10 ~~~L~i~~l~~~~~~~~--~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~ 87 (330)
T PRK09473 10 DALLDVKDLRVTFSTPD--GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLP 87 (330)
T ss_pred CceEEEeCeEEEEecCC--CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCC
Confidence 45799999999996421 2356999999999999999999999999999999999999996 99999999998652
Q ss_pred hHH---hc-cceEEEecCC--CCCCCCCHHHHHHHHHHHc-CCChhhHHHHHHHHHHHcCCcc---ccCCCCCCCChhHH
Q 000224 1538 PKA---AR-RLIGYCPQFD--ALLEYLTVQEHLELYARIK-GVAEYRMDDVVMEKLVEFDLLK---HAKKPSFTLSGGNK 1607 (1833)
Q Consensus 1538 ~~~---~~-~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~~-g~~~~~~~~~~~~~l~~~~L~~---~~~~~~~~LSgG~k 1607 (1833)
..+ .| ++|||+||++ .+.+.+|+.+++....... +....+..+++.++++.++|.+ ..++.+++||||||
T Consensus 88 ~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~ 167 (330)
T PRK09473 88 EKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMR 167 (330)
T ss_pred HHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHH
Confidence 222 23 4799999997 6889999999987655443 4555556677889999999964 35789999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecCh
Q 000224 1608 RKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1687 (1833)
Q Consensus 1608 qrl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~ 1687 (1833)
||++||+||+.+|++||+||||+|||+.+++.++++|++++++.| .|||++|||++++..+||||++|.+|++++.|++
T Consensus 168 QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g-~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~ 246 (330)
T PRK09473 168 QRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFN-TAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNA 246 (330)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcC-CEEEEEECCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999975444 6899999999999999999999999999999999
Q ss_pred hHHHhh
Q 000224 1688 QHLKTR 1693 (1833)
Q Consensus 1688 ~~l~~~ 1693 (1833)
+++.+.
T Consensus 247 ~~i~~~ 252 (330)
T PRK09473 247 RDVFYQ 252 (330)
T ss_pred HHHHhC
Confidence 998764
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-41 Score=393.50 Aligned_cols=223 Identities=28% Similarity=0.433 Sum_probs=193.9
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-hHH-
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-PKA- 1540 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~~- 1540 (1833)
.+++++|++|.|++ +.+++++||++++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 77 (255)
T PRK11300 4 PLLSVSGLMMRFGG------LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQI 77 (255)
T ss_pred ceEEEeeEEEEECC------EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHH
Confidence 47999999999952 4699999999999999999999999999999999999999999999999988653 222
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHHH-------cCC------C--hhhHHHHHHHHHHHcCCccccCCCCCCCChh
Q 000224 1541 ARRLIGYCPQFDALLEYLTVQEHLELYARI-------KGV------A--EYRMDDVVMEKLVEFDLLKHAKKPSFTLSGG 1605 (1833)
Q Consensus 1541 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~-------~g~------~--~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG 1605 (1833)
.+..++|+||++.+++.+|++||+.+.... .+. . ..+..+.+.++++.+|+.+..++++++||||
T Consensus 78 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G 157 (255)
T PRK11300 78 ARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYG 157 (255)
T ss_pred HhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHH
Confidence 345699999999999999999999875321 011 1 1122345778899999988899999999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEec
Q 000224 1606 NKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1685 (1833)
Q Consensus 1606 ~kqrl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g 1685 (1833)
||||++||+||+.+|++|||||||+|||+.+++.+++.|++++++.| +|||++||+++++..+|||+++|++|++++.|
T Consensus 158 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 236 (255)
T PRK11300 158 QQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHN-VTVLLIEHDMKLVMGISDRIYVVNQGTPLANG 236 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcC-CEEEEEeCCHHHHHHhCCEEEEEECCeEEecC
Confidence 99999999999999999999999999999999999999999864434 68999999999999999999999999999999
Q ss_pred ChhHHHh
Q 000224 1686 SPQHLKT 1692 (1833)
Q Consensus 1686 ~~~~l~~ 1692 (1833)
+++++.+
T Consensus 237 ~~~~~~~ 243 (255)
T PRK11300 237 TPEEIRN 243 (255)
T ss_pred CHHHHhh
Confidence 9887643
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=384.31 Aligned_cols=210 Identities=30% Similarity=0.442 Sum_probs=187.5
Q ss_pred EEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-h---HH
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-P---KA 1540 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~-~---~~ 1540 (1833)
++++|+++.|++ .+.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++... . ..
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~ 75 (214)
T cd03292 1 IEFINVTKTYPN-----GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPY 75 (214)
T ss_pred CEEEEEEEEeCC-----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHH
Confidence 468999999953 24599999999999999999999999999999999999999999999999988542 1 23
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCC
Q 000224 1541 ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDP 1620 (1833)
Q Consensus 1541 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p 1620 (1833)
.++.++|+||++.+++.+|++||+.+....++...++.++++.++++.+++.+..++++.+||||||||++|||||+.+|
T Consensus 76 ~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 155 (214)
T cd03292 76 LRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSP 155 (214)
T ss_pred HHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCC
Confidence 56789999999999999999999988766555555555667888999999988889999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEE
Q 000224 1621 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681 (1833)
Q Consensus 1621 ~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i 1681 (1833)
+++||||||+|||+.+++.+++.|+++++ +| +|||++||++++++.+|||+++|++|++
T Consensus 156 ~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~-~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 156 TILIADEPTGNLDPDTTWEIMNLLKKINK-AG-TTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999853 44 5899999999999999999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=383.05 Aligned_cols=204 Identities=29% Similarity=0.456 Sum_probs=179.2
Q ss_pred EEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccce
Q 000224 1466 YLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLI 1545 (1833)
Q Consensus 1466 ~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~~~i 1545 (1833)
+++|++|+|++ .+.+++++||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ...++++
T Consensus 1 ~~~~l~~~~~~-----~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~i 73 (205)
T cd03226 1 RIENISFSYKK-----GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA--KERRKSI 73 (205)
T ss_pred CcccEEEEeCC-----cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh--HHhhcce
Confidence 36899999953 1459999999999999999999999999999999999999999999999998753 3456789
Q ss_pred EEEecCCC-CCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000224 1546 GYCPQFDA-LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1624 (1833)
Q Consensus 1546 g~~pQ~~~-l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~vll 1624 (1833)
||+||++. .+..+|++||+.++....+. ..+++.++++.+++.+..++++.+||||||||++|||||+.+|++||
T Consensus 74 ~~~~q~~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 149 (205)
T cd03226 74 GYVMQDVDYQLFTDSVREELLLGLKELDA----GNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLI 149 (205)
T ss_pred EEEecChhhhhhhccHHHHHhhhhhhcCc----cHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 99999974 23457999999876543321 12467889999999988999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEE
Q 000224 1625 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLR 1682 (1833)
Q Consensus 1625 LDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~ 1682 (1833)
|||||+|||+.+++.+++.|+++++ +| +|||++||++++++.+|||+++|++|+++
T Consensus 150 lDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 150 FDEPTSGLDYKNMERVGELIRELAA-QG-KAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999863 44 58999999999999999999999999974
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-41 Score=395.05 Aligned_cols=224 Identities=24% Similarity=0.388 Sum_probs=198.3
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHh
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAA 1541 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 1541 (1833)
++++++|++|.|++. .+.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .....
T Consensus 6 ~~l~i~~l~~~~~~~----~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~ 81 (269)
T PRK13648 6 SIIVFKNVSFQYQSD----ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKL 81 (269)
T ss_pred ceEEEEEEEEEcCCC----CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 579999999999631 2458999999999999999999999999999999999999999999999998854 34556
Q ss_pred ccceEEEecCCC-CCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCC
Q 000224 1542 RRLIGYCPQFDA-LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDP 1620 (1833)
Q Consensus 1542 ~~~ig~~pQ~~~-l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p 1620 (1833)
++++||+||++. +++..|+++|+.+.....+.+.++..+.+.++++.+++.+..++++.+||||||||++|||||+.+|
T Consensus 82 ~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 161 (269)
T PRK13648 82 RKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNP 161 (269)
T ss_pred HhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 788999999974 6777899999987655555555555667788999999998899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1621 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1621 ~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
++|||||||+|||+.+++.+++.|++++++.| +|||++||+++++.. ||||++|++|++++.|+++++.+
T Consensus 162 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~-~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 162 SVIILDEATSMLDPDARQNLLDLVRKVKSEHN-ITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCchHHhc-CCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999864334 689999999999986 99999999999999999988754
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-41 Score=394.18 Aligned_cols=229 Identities=23% Similarity=0.351 Sum_probs=196.7
Q ss_pred ceEEEEeEEEEcCCCcc---ccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-h
Q 000224 1463 AIIYLRNLRKVYPGGKR---SDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-P 1538 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~---~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~-~ 1538 (1833)
++|+++||+|+|++... .+.+.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... .
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 47999999999963110 0134699999999999999999999999999999999999999999999999988642 2
Q ss_pred HHhccceEEEecCCC--CCCCCCHHHHHHHHHHHc-CCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHHHHHH
Q 000224 1539 KAARRLIGYCPQFDA--LLEYLTVQEHLELYARIK-GVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAI 1614 (1833)
Q Consensus 1539 ~~~~~~ig~~pQ~~~--l~~~lTv~e~l~~~~~~~-g~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~kqrl~lA~ 1614 (1833)
...++.+||+||++. +++.+|+.+++.+..... +....+..+.+.++++.+++. ...++++.+|||||||||+||+
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lar 162 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLAR 162 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHH
Confidence 334567999999974 567789999998765543 334444556788899999995 6778899999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1615 AMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1615 al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
||+.+|+||||||||+|||+.+++.+++.|++++++.| +|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 163 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g-~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 239 (267)
T PRK15112 163 ALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQG-ISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLA 239 (267)
T ss_pred HHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC-cEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhc
Confidence 99999999999999999999999999999999864434 689999999999999999999999999999999888764
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-41 Score=386.80 Aligned_cols=219 Identities=26% Similarity=0.440 Sum_probs=186.0
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCCh----H
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDP----K 1539 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~----~ 1539 (1833)
+|+++|++++|++.. ....+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.... .
T Consensus 1 ~l~~~~v~~~~~~~~--~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (228)
T cd03257 1 LLEVKNLSVSFPTGG--GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRK 78 (228)
T ss_pred CeEEEeeeEeccCCC--cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHH
Confidence 478999999996321 0126999999999999999999999999999999999999999999999999886532 3
Q ss_pred HhccceEEEecCC--CCCCCCCHHHHHHHHHHHcCCCh-hhHHHH-HHHHHHHcCCc-cccCCCCCCCChhHHHHHHHHH
Q 000224 1540 AARRLIGYCPQFD--ALLEYLTVQEHLELYARIKGVAE-YRMDDV-VMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAI 1614 (1833)
Q Consensus 1540 ~~~~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~~g~~~-~~~~~~-~~~~l~~~~L~-~~~~~~~~~LSgG~kqrl~lA~ 1614 (1833)
..++++||+||++ .+++.+|++||+.+.....+... ....+. +.++++.+++. +..++++.+||||||||++|||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lar 158 (228)
T cd03257 79 IRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIAR 158 (228)
T ss_pred HhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHH
Confidence 4567899999998 46678999999987654443222 122222 35788999995 5789999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEec
Q 000224 1615 AMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1685 (1833)
Q Consensus 1615 al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g 1685 (1833)
||+.+|++|||||||+|||+.+++.+++.|++++++.| +|||++||++++++.+|||+++|++|++++.|
T Consensus 159 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 159 ALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELG-LTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999999864334 58999999999999999999999999998754
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=391.68 Aligned_cols=210 Identities=27% Similarity=0.419 Sum_probs=187.9
Q ss_pred cceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHh
Q 000224 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAA 1541 (1833)
Q Consensus 1462 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 1541 (1833)
.++|+++|++|+|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..
T Consensus 10 ~~~l~i~~l~~~~~~------~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~----~~ 79 (257)
T PRK11247 10 GTPLLLNAVSKRYGE------RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA----EA 79 (257)
T ss_pred CCcEEEEEEEEEECC------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH----Hh
Confidence 357999999999953 45999999999999999999999999999999999999999999999998753 35
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCC
Q 000224 1542 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1621 (1833)
Q Consensus 1542 ~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~ 1621 (1833)
++.+||+||++.+++.+|++||+.+.. ++ ..++++.++++.++|.+..++++.+|||||||||+||+||+.+|+
T Consensus 80 ~~~i~~v~q~~~l~~~~tv~enl~~~~--~~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~ 153 (257)
T PRK11247 80 REDTRLMFQDARLLPWKKVIDNVGLGL--KG----QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPG 153 (257)
T ss_pred hCceEEEecCccCCCCCcHHHHHHhcc--cc----hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 678999999999988899999998642 11 124567789999999988899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChh
Q 000224 1622 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1688 (1833)
Q Consensus 1622 vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~ 1688 (1833)
+|||||||+|||+.+++.+++.|+++.++.+ +|||++|||+++++.+||||++|++|++++.|+.+
T Consensus 154 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~-~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 154 LLLLDEPLGALDALTRIEMQDLIESLWQQHG-FTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999999864444 58999999999999999999999999999888654
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=390.52 Aligned_cols=201 Identities=27% Similarity=0.468 Sum_probs=183.0
Q ss_pred cccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcceEEEc-cCCCCCCCCCH
Q 000224 575 NCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCP-QYDILFPELTV 653 (1833)
Q Consensus 575 ~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig~~~-Q~~~l~~~lTv 653 (1833)
.+.+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.......++.+||++ |++.+++.+|+
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcH
Confidence 45799999999999999999999999999999999999999999999999876544445677899998 56778889999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHH
Q 000224 654 REHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLT 733 (1833)
Q Consensus 654 ~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLDEPtsgLD~~~r~~l 733 (1833)
+||+.+.....+...++.++++.++++.+|+.+..++++.+||||||||++||+||+.+|++|||||||+|||+.+++++
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l 192 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENI 192 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence 99999877776766666677889999999999888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeec
Q 000224 734 WQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 775 (1833)
Q Consensus 734 ~~~l~~~~--~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G 775 (1833)
+++|++++ +++|||++||+++++..+||++++|++|++++.|
T Consensus 193 ~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 193 RNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 99999985 3799999999999999999999999999998654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-41 Score=386.65 Aligned_cols=215 Identities=25% Similarity=0.446 Sum_probs=190.4
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHH---H
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMD---E 633 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~---~ 633 (1833)
..|+++||++.|++......+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. +.. .
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 469999999999642211359999999999999999999999999999999999999999999999998753 221 2
Q ss_pred h-hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCC
Q 000224 634 I-RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGD 712 (1833)
Q Consensus 634 ~-r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~ 712 (1833)
. ++.+||+||++.+++.+|+.||+.+....++.+..+.++++.++++.+|+.+..++++.+||||||||++|||||+.+
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~ 164 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGR 164 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 2 367999999999999999999998866555555556678899999999999888999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEe
Q 000224 713 SKVVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKC 773 (1833)
Q Consensus 713 p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~ 773 (1833)
|++|||||||+|||+.+++.++++|++++ + |+|||++||++++++. |||+++|++|++++
T Consensus 165 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~l~~g~i~~ 226 (228)
T PRK10584 165 PDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQLQE 226 (228)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEECCEEEe
Confidence 99999999999999999999999999984 3 8999999999999965 99999999999864
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=389.27 Aligned_cols=220 Identities=25% Similarity=0.415 Sum_probs=192.3
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-hH-H
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-PK-A 1540 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~-~ 1540 (1833)
++++++|++|.|++ +.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... .. .
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~ 77 (237)
T PRK11614 4 VMLSFDKVSAHYGK------IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKI 77 (237)
T ss_pred cEEEEEeEEEeeCC------ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHH
Confidence 47999999999952 4699999999999999999999999999999999999999999999999988653 22 3
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHc-CCccccCCCCCCCChhHHHHHHHHHHHhcC
Q 000224 1541 ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEF-DLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1619 (1833)
Q Consensus 1541 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~-~L~~~~~~~~~~LSgG~kqrl~lA~al~~~ 1619 (1833)
.++.+||+||++.+++.+|++||+.+..... ...+..+.+.++++.+ ++.+..++++.+||||||||++||+||+.+
T Consensus 78 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 78 MREAVAIVPEGRRVFSRMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred HHhCEEEeccCcccCCCCcHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 5678999999998998899999998743222 1223344566777777 577777889999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1620 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1620 p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
|++|||||||+|||+.+++.+++.|+++++ +| +|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QG-MTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 999999999999999999999999999864 44 689999999999999999999999999999999988753
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-41 Score=389.01 Aligned_cols=220 Identities=26% Similarity=0.399 Sum_probs=194.8
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-------
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS------- 1536 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~------- 1536 (1833)
+++++|+++.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 75 (242)
T PRK11124 2 SIQLNGINCFYGA------HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDK 75 (242)
T ss_pred EEEEEeeEEEECC------eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchh
Confidence 5789999999953 459999999999999999999999999999999999999999999999998731
Q ss_pred ChHHhccceEEEecCCCCCCCCCHHHHHHH-HHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHH
Q 000224 1537 DPKAARRLIGYCPQFDALLEYLTVQEHLEL-YARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIA 1615 (1833)
Q Consensus 1537 ~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~-~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~a 1615 (1833)
.....+++|||+||++.+++.+|+.||+.+ .....+....+..+.+.++++.+|+.+..++++.+||||||||++||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lara 155 (242)
T PRK11124 76 AIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARA 155 (242)
T ss_pred hHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 123456789999999999999999999975 3334455444455678889999999888899999999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHH
Q 000224 1616 MIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1691 (1833)
Q Consensus 1616 l~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~ 1691 (1833)
|+.+|++|||||||+|||+.+++.+++.|++++ ++| +|||++||+++++..+|||+++|.+|+++..|+++++.
T Consensus 156 l~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~-~~~-~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 229 (242)
T PRK11124 156 LMMEPQVLLFDEPTAALDPEITAQIVSIIRELA-ETG-ITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred HhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHH-HcC-CEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhc
Confidence 999999999999999999999999999999985 344 58999999999999999999999999999999887653
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-41 Score=387.75 Aligned_cols=217 Identities=29% Similarity=0.397 Sum_probs=189.6
Q ss_pred EEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-hH-Hhc
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-PK-AAR 1542 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~-~~~ 1542 (1833)
|+++||++.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++... .. ..+
T Consensus 1 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (230)
T TIGR03410 1 LEVSNLNVYYGQ------SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74 (230)
T ss_pred CEEEeEEEEeCC------eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHH
Confidence 468999999963 4699999999999999999999999999999999999999999999999988642 22 235
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcC-CccccCCCCCCCChhHHHHHHHHHHHhcCCC
Q 000224 1543 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFD-LLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1621 (1833)
Q Consensus 1543 ~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~-L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~ 1621 (1833)
+++||+||++.+++.+|++||+.+....++.. ..+...++++.++ +.+..++++.+||||||||++||+||+.+|+
T Consensus 75 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 151 (230)
T TIGR03410 75 AGIAYVPQGREIFPRLTVEENLLTGLAALPRR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPK 151 (230)
T ss_pred hCeEEeccCCcccCCCcHHHHHHHHHHhcCcc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 68999999999999899999998765544322 1234566777776 5677899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHH
Q 000224 1622 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1691 (1833)
Q Consensus 1622 vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~ 1691 (1833)
+|||||||+|||+.+++.+++.|++++++.+ +|||++||+++++..+|||+++|++|++++.|+++++.
T Consensus 152 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 152 LLLLDEPTEGIQPSIIKDIGRVIRRLRAEGG-MAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHcCC-cEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 9999999999999999999999999864334 68999999999999999999999999999999988763
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=396.29 Aligned_cols=225 Identities=27% Similarity=0.468 Sum_probs=195.5
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-----Ch
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-----DP 1538 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-----~~ 1538 (1833)
.|+++|++|.|++... ..+.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. ..
T Consensus 2 ~l~~~~l~~~~~~~~~-~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (280)
T PRK13649 2 GINLQNVSYTYQAGTP-FEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDI 80 (280)
T ss_pred eEEEEEEEEEcCCCCc-cccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCH
Confidence 3789999999964210 11459999999999999999999999999999999999999999999999998753 23
Q ss_pred HHhccceEEEecCC--CCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHHHHHHH
Q 000224 1539 KAARRLIGYCPQFD--ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIA 1615 (1833)
Q Consensus 1539 ~~~~~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~kqrl~lA~a 1615 (1833)
...++.|||+||++ .+++ .|++||+.+.....+...++..+.+.++++.++|. ...++++.+||||||||++||+|
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~a 159 (280)
T PRK13649 81 KQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGI 159 (280)
T ss_pred HHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence 45677899999996 4555 69999998765555555555566778899999997 46799999999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1616 MIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1616 l~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
|+.+|++|||||||+|||+.+++.+++.|+++++ +| +|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 160 LAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SG-MTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999863 44 689999999999999999999999999999999988754
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-41 Score=383.60 Aligned_cols=209 Identities=27% Similarity=0.450 Sum_probs=186.2
Q ss_pred EEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC---ChHHh
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS---DPKAA 1541 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~---~~~~~ 1541 (1833)
++++|+++.|++ +.+++++||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .....
T Consensus 1 l~~~~l~~~~~~------~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (213)
T cd03262 1 IEIKNLHKSFGD------FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINEL 74 (213)
T ss_pred CEEEEEEEEECC------eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHH
Confidence 468999999953 459999999999999999999999999999999999999999999999998853 23345
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHHH-HcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCC
Q 000224 1542 RRLIGYCPQFDALLEYLTVQEHLELYAR-IKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDP 1620 (1833)
Q Consensus 1542 ~~~ig~~pQ~~~l~~~lTv~e~l~~~~~-~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p 1620 (1833)
++++||+||++.+++.+|++||+.+... .++....+.++++.++++.+++.+..++++.+||||||||++||+||+.+|
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 154 (213)
T cd03262 75 RQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNP 154 (213)
T ss_pred HhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCC
Confidence 7789999999999988999999987643 345444445567788999999988889999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEE
Q 000224 1621 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681 (1833)
Q Consensus 1621 ~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i 1681 (1833)
++|||||||+|||+.+++.+++.|+++++ .| +|||++||++++++.+|||+++|++|++
T Consensus 155 ~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~-~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 155 KVMLFDEPTSALDPELVGEVLDVMKDLAE-EG-MTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999864 44 5899999999999999999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-41 Score=395.69 Aligned_cols=219 Identities=29% Similarity=0.457 Sum_probs=195.4
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc---cHHHhhc
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA---DMDEIRK 636 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~---~~~~~r~ 636 (1833)
++++||++.|++ .+.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .....++
T Consensus 2 l~~~~l~~~~~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (275)
T PRK13639 2 LETRDLKYSYPD---GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRK 78 (275)
T ss_pred EEEEEEEEEeCC---CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHh
Confidence 789999999953 2359999999999999999999999999999999999999999999999998742 2335678
Q ss_pred ceEEEccCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcE
Q 000224 637 GLGVCPQYDI-LFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 715 (1833)
Q Consensus 637 ~ig~~~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 715 (1833)
.|||+||++. .+...||.||+.+.....+...++.++++.++++.+||.+..++++++||||||||++|||||+.+|++
T Consensus 79 ~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~l 158 (275)
T PRK13639 79 TVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEI 158 (275)
T ss_pred heEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 8999999973 333469999998765444555566677899999999999989999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 716 VILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 716 liLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
+||||||+|||+.++++++++|++++ +|+|||++||+++++..+|||+++|++|++++.|+++++.
T Consensus 159 lllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 159 IVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999986 5899999999999999999999999999999999987764
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=399.09 Aligned_cols=222 Identities=30% Similarity=0.444 Sum_probs=195.4
Q ss_pred eEEEEeeEEEecCCCC-cccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc------cH
Q 000224 559 CIQIRKLHKVYATKRG-NCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA------DM 631 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~-~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~------~~ 631 (1833)
.|+++||+|.|+++.+ .+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. +.
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 85 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEV 85 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccH
Confidence 5899999999964321 1359999999999999999999999999999999999999999999999998742 23
Q ss_pred HHhhcceEEEccCCC--CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-cccccccCCCChhHHHHHHHHHH
Q 000224 632 DEIRKGLGVCPQYDI--LFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA-DKVNIVVRALSGGMKRKLSLGIA 708 (1833)
Q Consensus 632 ~~~r~~ig~~~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSgGqkqrl~lA~a 708 (1833)
...|+.+||+||++. +++ .|++||+.+.....+...++..+++.++++.++|. +..++++++||||||||++||||
T Consensus 86 ~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lara 164 (289)
T PRK13645 86 KRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGI 164 (289)
T ss_pred HHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHH
Confidence 456788999999973 454 59999998876555555566667788999999995 67899999999999999999999
Q ss_pred HhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 709 LIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 709 l~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~--~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
|+.+|++|||||||+|||+.+++.++++|+++. .|+|||++||+++++..+||||++|++|++++.|++.++.
T Consensus 165 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 165 IAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999985 3899999999999999999999999999999999987663
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-41 Score=387.16 Aligned_cols=217 Identities=29% Similarity=0.472 Sum_probs=196.7
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcceE
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 639 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 639 (1833)
|+++|+++.|++ .+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++..... .++.+|
T Consensus 1 l~~~~l~~~~~~-----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~-~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE-----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP-EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC-----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh-hHcCEE
Confidence 468999999952 28999999999999999999999999999999999999999999999998754222 367899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEEe
Q 000224 640 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 719 (1833)
Q Consensus 640 ~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 719 (1833)
||||++.+++.+|+.||+.+.....+.+..+.++++.++++.+||.+..++++.+||||||||++||||++.+|++++||
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 154 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLD 154 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 99999999999999999988765556666667778899999999998899999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 720 EPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 720 EPtsgLD~~~r~~l~~~l~~~~~--g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
|||+|||+.++++++++|+++.+ |+|||++||+++++..+|||+++|++|++++.|++..+..
T Consensus 155 EPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 219 (235)
T cd03299 155 EPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFK 219 (235)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999853 8999999999999999999999999999999999876643
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-41 Score=392.59 Aligned_cols=220 Identities=28% Similarity=0.428 Sum_probs=193.6
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cH-HHhh
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DM-DEIR 635 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~-~~~r 635 (1833)
..++++|++|.|+ ++.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. +. ...+
T Consensus 4 ~~l~~~~l~~~~~----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (255)
T PRK11300 4 PLLSVSGLMMRFG----GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIAR 79 (255)
T ss_pred ceEEEeeEEEEEC----CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHh
Confidence 3699999999995 3469999999999999999999999999999999999999999999999998754 22 2345
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHh-------cCC--------CHHHHHHHHHHHHHHcCCCcccccccCCCChhHH
Q 000224 636 KGLGVCPQYDILFPELTVREHLEMFAVL-------KGV--------KEELLESVVAEMVDEVGLADKVNIVVRALSGGMK 700 (1833)
Q Consensus 636 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~-------~~~--------~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqk 700 (1833)
..++|+||++.+++.+||+||+.+.... .+. ...+..+++.++++.+||.+..++++++||||||
T Consensus 80 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~ 159 (255)
T PRK11300 80 MGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQ 159 (255)
T ss_pred cCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHH
Confidence 6799999999999999999999875321 111 1112345688899999999889999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHH
Q 000224 701 RKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSL 778 (1833)
Q Consensus 701 qrl~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~ 778 (1833)
||++||+||+.+|++|||||||+|||+.+++.++++|++++ + |+|||++||+++++..+|||+++|++|++++.|++.
T Consensus 160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 239 (255)
T PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPE 239 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHH
Confidence 99999999999999999999999999999999999999985 3 899999999999999999999999999999999887
Q ss_pred HHH
Q 000224 779 FLK 781 (1833)
Q Consensus 779 ~Lk 781 (1833)
++.
T Consensus 240 ~~~ 242 (255)
T PRK11300 240 EIR 242 (255)
T ss_pred HHh
Confidence 653
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=390.57 Aligned_cols=221 Identities=25% Similarity=0.366 Sum_probs=195.5
Q ss_pred EEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-------
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD------- 1537 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~------- 1537 (1833)
|+++||++.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 i~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~ 74 (252)
T TIGR03005 1 VRFSDVTKRFGI------LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74 (252)
T ss_pred CEEEEEEEEeCC------eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccc
Confidence 468999999953 4599999999999999999999999999999999999999999999999987431
Q ss_pred -------hHHhccceEEEecCCCCCCCCCHHHHHHHHHH-HcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHH
Q 000224 1538 -------PKAARRLIGYCPQFDALLEYLTVQEHLELYAR-IKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRK 1609 (1833)
Q Consensus 1538 -------~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~-~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqr 1609 (1833)
....++.+||++|++.+++.+|+.||+.+... .++.......+.+.++++.+++.+..++.+.+||||||||
T Consensus 75 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr 154 (252)
T TIGR03005 75 VPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQR 154 (252)
T ss_pred cccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHH
Confidence 12457789999999999998999999987432 2344444455678889999999888899999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhH
Q 000224 1610 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1689 (1833)
Q Consensus 1610 l~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~ 1689 (1833)
++||+||+.+|++|||||||+|||+.+++.+++.|++++++.| +|||++||+++++..+|||+++|++|++++.|++++
T Consensus 155 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~-~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T TIGR03005 155 VAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHD-LTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDE 233 (252)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-cEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999864434 689999999999999999999999999999999888
Q ss_pred HHh
Q 000224 1690 LKT 1692 (1833)
Q Consensus 1690 l~~ 1692 (1833)
+.+
T Consensus 234 ~~~ 236 (252)
T TIGR03005 234 IFR 236 (252)
T ss_pred Hhc
Confidence 754
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=389.00 Aligned_cols=218 Identities=25% Similarity=0.436 Sum_probs=193.8
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cH-HHhh
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DM-DEIR 635 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~-~~~r 635 (1833)
..++++||+|.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +. ...+
T Consensus 4 ~~l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 79 (237)
T PRK11614 4 VMLSFDKVSAHYGK----IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMR 79 (237)
T ss_pred cEEEEEeEEEeeCC----ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHH
Confidence 46899999999953 469999999999999999999999999999999999999999999999998754 22 2356
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-CCCcccccccCCCChhHHHHHHHHHHHhCCCc
Q 000224 636 KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEV-GLADKVNIVVRALSGGMKRKLSLGIALIGDSK 714 (1833)
Q Consensus 636 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~-~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~ 714 (1833)
+.+||+||++.+++.+||.||+.+..... .....+++++++++.+ ++.+..++++++||||||||++|||||+.+|+
T Consensus 80 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (237)
T PRK11614 80 EAVAIVPEGRRVFSRMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPR 157 (237)
T ss_pred hCEEEeccCcccCCCCcHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCC
Confidence 78999999999999999999998754322 2333456678888888 58777888999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 715 VVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 715 vliLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
+|||||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 158 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 158 LLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 999999999999999999999999985 5899999999999999999999999999999999987774
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=352.56 Aligned_cols=215 Identities=27% Similarity=0.447 Sum_probs=191.5
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcceE
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 639 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 639 (1833)
+.+++|+++|+. .==.++++|+.||+++|+||+|||||||+|+|+|+..|.+|+|.|+|.|.+... -.++-+.
T Consensus 2 l~L~~V~~~y~~------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~-P~~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGH------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASP-PAERPVS 74 (231)
T ss_pred ccccceEEeeCc------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCC-cccCChh
Confidence 567889999953 335788999999999999999999999999999999999999999999986432 2345699
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEE
Q 000224 640 VCPQYDILFPELTVREHLEMFAVLKGVK-EELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVIL 718 (1833)
Q Consensus 640 ~~~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliL 718 (1833)
+++|++.||..+||++|+.++.. .|+. ..+.+++++.++..+||..+.++.+.+||||||||++|||+|+.+-+|++|
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~-P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLL 153 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLS-PGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLL 153 (231)
T ss_pred hhhhccccchhhhhhhhhcccCC-cccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEe
Confidence 99999999999999999988532 1222 245577899999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 719 DEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 719 DEPtsgLD~~~r~~l~~~l~~~~--~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
|||+|+|||.-|.++..++.++. ++.|++++||+.+++..++||++++++|+|...|+..++..
T Consensus 154 DEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~ 219 (231)
T COG3840 154 DEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLS 219 (231)
T ss_pred cCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhc
Confidence 99999999999999999999985 48999999999999999999999999999999999876643
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=392.83 Aligned_cols=219 Identities=26% Similarity=0.412 Sum_probs=195.6
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCC-----CcceEEEcCccCCc---
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP-----TTGDALVFGKNITA--- 629 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~g~~i~~--- 629 (1833)
..|+++||+|.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|+++|.++..
T Consensus 18 ~~l~~~nl~~~~~~----~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 18 IKMRARDVSVFYGE----KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred ceEEEEeEEEEECC----EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 57999999999953 4699999999999999999999999999999999999975 89999999998853
Q ss_pred cHHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHcCCCc----ccccccCCCChhHHHHH
Q 000224 630 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV--KEELLESVVAEMVDEVGLAD----KVNIVVRALSGGMKRKL 703 (1833)
Q Consensus 630 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~--~~~~~~~~v~~~l~~~~L~~----~~~~~~~~LSgGqkqrl 703 (1833)
+....|+.+||+||++.+++. |+.||+.+....++. +..+.++++.++++.+|+.+ ..++.+.+||||||||+
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv 172 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRL 172 (267)
T ss_pred chHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHH
Confidence 234567889999999988875 999999887655443 33455677899999999964 46788999999999999
Q ss_pred HHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 704 SLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 704 ~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
+|||||+.+|++|||||||+|||+.+++.+.++|+++++++|||++||+++++..+|||+++|++|+++..|++.++.
T Consensus 173 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 173 CIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999977889999999999999999999999999999999987764
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-41 Score=391.80 Aligned_cols=219 Identities=28% Similarity=0.443 Sum_probs=196.5
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc----------
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA---------- 629 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~---------- 629 (1833)
|+++||++.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..
T Consensus 1 i~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 76 (252)
T TIGR03005 1 VRFSDVTKRFGI----LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVP 76 (252)
T ss_pred CEEEEEEEEeCC----eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccc
Confidence 468999999953 469999999999999999999999999999999999999999999999988742
Q ss_pred ----cHHHhhcceEEEccCCCCCCCCCHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHH
Q 000224 630 ----DMDEIRKGLGVCPQYDILFPELTVREHLEMFAV-LKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLS 704 (1833)
Q Consensus 630 ----~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~-~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~ 704 (1833)
.....++.+||++|++.+++.+|+.||+.+... .++......++++.++++.+|+.+..++.+.+||||||||++
T Consensus 77 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~ 156 (252)
T TIGR03005 77 ADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVA 156 (252)
T ss_pred cchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHH
Confidence 123457889999999999999999999987532 345555566778899999999998889999999999999999
Q ss_pred HHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 705 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 705 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
|||||+.+|+++||||||+|||+.+++.++++|+++. + |+|||++||+++++..+|||+++|++|++++.|++.++.+
T Consensus 157 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 236 (252)
T TIGR03005 157 IARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFR 236 (252)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999999985 3 8999999999999999999999999999999999877643
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-41 Score=395.25 Aligned_cols=221 Identities=27% Similarity=0.471 Sum_probs=198.2
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHHhhc
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 636 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~ 636 (1833)
..++++|+++.|++. ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +....|+
T Consensus 6 ~~l~~~nl~~~~~~~--~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 83 (271)
T PRK13632 6 VMIKVENVSFSYPNS--ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRK 83 (271)
T ss_pred eEEEEEeEEEEcCCC--CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhc
Confidence 469999999999631 2469999999999999999999999999999999999999999999999998853 3446678
Q ss_pred ceEEEccCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcE
Q 000224 637 GLGVCPQYDI-LFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 715 (1833)
Q Consensus 637 ~ig~~~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 715 (1833)
.+|||||++. .++.+|++||+.+.....+.+.++.++++.++++.+||.+..++.+.+||||||||++|||||+.+|++
T Consensus 84 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 163 (271)
T PRK13632 84 KIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEI 163 (271)
T ss_pred ceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 8999999974 677789999998876555566666677899999999999889999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 716 VILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 716 liLDEPtsgLD~~~r~~l~~~l~~~~-~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
|||||||+|||+.+++.++++|++++ + ++|||++||+++++. .|||+++|++|++++.|++.++.
T Consensus 164 llLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 164 IIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999985 3 589999999999996 79999999999999999876653
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=393.98 Aligned_cols=225 Identities=27% Similarity=0.380 Sum_probs=198.5
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhc
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAAR 1542 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~~ 1542 (1833)
+|+++|++++|++. ..+.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++.. .....+
T Consensus 4 ~l~~~~l~~~~~~~---~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 80 (277)
T PRK13642 4 ILEVENLVFKYEKE---SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLR 80 (277)
T ss_pred eEEEEEEEEEcCCC---CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHh
Confidence 78999999999632 12459999999999999999999999999999999999999999999999999864 334567
Q ss_pred cceEEEecCCC-CCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCC
Q 000224 1543 RLIGYCPQFDA-LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1621 (1833)
Q Consensus 1543 ~~ig~~pQ~~~-l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~ 1621 (1833)
+.+||+||++. .++..|+.||+.+.....+....+..+++.++++.++|.+..++++.+||||||||++|||||+.+|+
T Consensus 81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~ 160 (277)
T PRK13642 81 RKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPE 160 (277)
T ss_pred cceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 88999999974 56678999999876554455555556678889999999988999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000224 1622 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693 (1833)
Q Consensus 1622 vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~ 1693 (1833)
+|||||||+|||+.+++.+++.|++++++.| +|||++||+++++. .|||+++|++|++++.|+++++.+.
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~l~~~~g-~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 161 IIILDESTSMLDPTGRQEIMRVIHEIKEKYQ-LTVLSITHDLDEAA-SSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHH-hCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999865434 68999999999997 5999999999999999999887654
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=392.10 Aligned_cols=228 Identities=26% Similarity=0.406 Sum_probs=195.8
Q ss_pred eEEEEeEEEEcCCCc---cccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-h-
Q 000224 1464 IIYLRNLRKVYPGGK---RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-P- 1538 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~---~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~-~- 1538 (1833)
+|+++||+|.|++.. ..+++.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... .
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 589999999996310 00135699999999999999999999999999999999999999999999999988642 2
Q ss_pred --HHhccceEEEecCC--CCCCCCCHHHHHHHHHHH-cCCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHHHH
Q 000224 1539 --KAARRLIGYCPQFD--ALLEYLTVQEHLELYARI-KGVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSV 1612 (1833)
Q Consensus 1539 --~~~~~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~-~g~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~kqrl~l 1612 (1833)
...++.|||+||++ .+++.+|++||+.+.... .+......++++.++++.+++. ...++++.+||||||||++|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l 161 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 22467899999996 466789999999765432 2344434456788899999996 67899999999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1613 AIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1613 A~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
||||+.+|++|||||||+|||+.+++.+++.|+++.++.| +|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 162 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g-~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (265)
T TIGR02769 162 ARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFG-TAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLS 240 (265)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-cEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcC
Confidence 9999999999999999999999999999999999864434 689999999999999999999999999999999988764
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=386.00 Aligned_cols=218 Identities=30% Similarity=0.473 Sum_probs=198.5
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcceE
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 639 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 639 (1833)
|+++||+++|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.... ..++.+|
T Consensus 1 l~~~~l~~~~~~----~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG----FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLP-PHKRPVN 75 (232)
T ss_pred CEEEeEEEEeCC----eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC-hhhcceE
Confidence 468999999953 46999999999999999999999999999999999999999999999999875422 2367899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEEe
Q 000224 640 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 719 (1833)
Q Consensus 640 ~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 719 (1833)
||+|++.+++.+|+.||+.+.....+......+++++++++.+|+.+..++.+.+||||||||++|||||+.+|+++|||
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllD 155 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLD 155 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999999988776666666666778899999999998899999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 720 EPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 720 EPtsgLD~~~r~~l~~~l~~~~~--g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
|||+|||+.++++++++|+++++ |+|||++||+++++..+|||+++|++|++.+.|++.++.+
T Consensus 156 EP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~ 220 (232)
T cd03300 156 EPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE 220 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHh
Confidence 99999999999999999999863 8999999999999999999999999999999998877654
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=384.86 Aligned_cols=219 Identities=29% Similarity=0.482 Sum_probs=195.8
Q ss_pred EEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccc
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1544 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~~~ 1544 (1833)
|+++|+++.|++ + +++|+||++++||++||+|+||||||||+++|+|+++|++|+|+++|.++..... .++.
T Consensus 1 l~~~~l~~~~~~------~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~-~~~~ 72 (235)
T cd03299 1 LKVENLSKDWKE------F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP-EKRD 72 (235)
T ss_pred CeeEeEEEEeCC------c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh-hHcC
Confidence 468999999952 2 7999999999999999999999999999999999999999999999998865322 3578
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000224 1545 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1624 (1833)
Q Consensus 1545 ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~vll 1624 (1833)
+||+||++.+++.+|+.||+.+.....+....+..+.+.++++.++|.+..++++.+|||||||||+||+||+.+|++++
T Consensus 73 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 152 (235)
T cd03299 73 ISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILL 152 (235)
T ss_pred EEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999889999999876555555545556677889999999988999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1625 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1625 LDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
|||||+|||+.+++.+++.|++++.+.| +|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 153 lDEPt~gLD~~~~~~l~~~l~~~~~~~~-~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 219 (235)
T cd03299 153 LDEPFSALDVRTKEKLREELKKIRKEFG-VTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFK 219 (235)
T ss_pred ECCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 9999999999999999999999864434 689999999999999999999999999999999887754
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=390.93 Aligned_cols=219 Identities=26% Similarity=0.432 Sum_probs=195.8
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCC-----CcceEEEcCccCCc---c
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP-----TTGDALVFGKNITA---D 630 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~g~~i~~---~ 630 (1833)
.++++|++|.|++ +.+|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .
T Consensus 4 ~l~i~~v~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~ 79 (258)
T PRK14241 4 RIDVKDLNIYYGS----FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVD 79 (258)
T ss_pred cEEEeeEEEEECC----EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccC
Confidence 5899999999953 4699999999999999999999999999999999999974 79999999998742 2
Q ss_pred HHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHHH
Q 000224 631 MDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV-KEELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLSL 705 (1833)
Q Consensus 631 ~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~v~~~l~~~~L~----~~~~~~~~~LSgGqkqrl~l 705 (1833)
....|+.+||++|++.+++.+||+||+.+.....+. +.+..+++++++++.+|+. +..++.+.+|||||||||+|
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 159 (258)
T PRK14241 80 PVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCI 159 (258)
T ss_pred hHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHH
Confidence 345678899999999999999999999887655443 4455667889999999984 46788999999999999999
Q ss_pred HHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEee------CCEEEeecCHHH
Q 000224 706 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMA------NGSLKCCGSSLF 779 (1833)
Q Consensus 706 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~------~G~l~~~G~~~~ 779 (1833)
||||+.+|+++||||||+|||+.++++++++|+++++++|||++||+++++..+||||++|+ +|++++.|++.+
T Consensus 160 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~ 239 (258)
T PRK14241 160 ARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEK 239 (258)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCHHH
Confidence 99999999999999999999999999999999999778999999999999999999999997 899999999877
Q ss_pred HH
Q 000224 780 LK 781 (1833)
Q Consensus 780 Lk 781 (1833)
+.
T Consensus 240 ~~ 241 (258)
T PRK14241 240 IF 241 (258)
T ss_pred HH
Confidence 64
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=393.34 Aligned_cols=223 Identities=23% Similarity=0.319 Sum_probs=195.2
Q ss_pred cceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHH
Q 000224 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKA 1540 (1833)
Q Consensus 1462 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~ 1540 (1833)
+.+|+++|++|+|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.. ....
T Consensus 5 ~~~l~i~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~ 78 (265)
T PRK10253 5 VARLRGEQLTLGYGK------YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKE 78 (265)
T ss_pred ccEEEEEEEEEEECC------EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHH
Confidence 357999999999963 459999999999999999999999999999999999999999999999998854 3345
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHH-HcC---CChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHH
Q 000224 1541 ARRLIGYCPQFDALLEYLTVQEHLELYAR-IKG---VAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAM 1616 (1833)
Q Consensus 1541 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~-~~g---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al 1616 (1833)
.++.+||+||++.+++.+|++||+.+... ..+ ...+..++.+.++++.+++.+..++++.+||||||||++|||||
T Consensus 79 ~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral 158 (265)
T PRK10253 79 VARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVL 158 (265)
T ss_pred HhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHH
Confidence 56789999999988888999999976421 111 11122345678899999998889999999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHH
Q 000224 1617 IGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1691 (1833)
Q Consensus 1617 ~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~ 1691 (1833)
+.+|++|||||||+|||+.+++.+++.|++++++.| .|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 159 ~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~-~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 159 AQETAIMLLDEPTTWLDISHQIDLLELLSELNREKG-YTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999864334 68999999999999999999999999999999988765
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=389.54 Aligned_cols=221 Identities=24% Similarity=0.421 Sum_probs=194.2
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEEcCeeCC--
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP-----TDGTAFIFGKDIR-- 1535 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~G~~i~-- 1535 (1833)
.+|+++|++|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|+++.
T Consensus 3 ~~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~ 76 (253)
T PRK14267 3 FAIETVNLRVYYGS------NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSP 76 (253)
T ss_pred ceEEEEeEEEEeCC------eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccc
Confidence 46899999999953 4599999999999999999999999999999999999987 4999999999885
Q ss_pred C-ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCC--ChhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHH
Q 000224 1536 S-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGV--AEYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKR 1608 (1833)
Q Consensus 1536 ~-~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~--~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgG~kq 1608 (1833)
. .....++++||+||++.+++.+|+.||+.+....++. +.+...+.+.++++.+++. +..++++.+|||||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 156 (253)
T PRK14267 77 DVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQ 156 (253)
T ss_pred ccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHH
Confidence 2 3345677899999999999989999999876554443 2334445677889999884 3578899999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChh
Q 000224 1609 KLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1688 (1833)
Q Consensus 1609 rl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~ 1688 (1833)
|++|||||+.+|++|||||||+|||+.+++.+++.|++++ + + +|||++||+++++..+||||++|++|++++.|+++
T Consensus 157 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~-~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 157 RLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELK-K-E-YTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-h-C-CEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999985 3 3 58999999999999999999999999999999998
Q ss_pred HHHh
Q 000224 1689 HLKT 1692 (1833)
Q Consensus 1689 ~l~~ 1692 (1833)
++.+
T Consensus 234 ~~~~ 237 (253)
T PRK14267 234 KVFE 237 (253)
T ss_pred HHHh
Confidence 8754
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=391.21 Aligned_cols=220 Identities=31% Similarity=0.492 Sum_probs=196.1
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCC--C---CcceEEEcCccCCc---
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP--P---TTGDALVFGKNITA--- 629 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~--p---~~G~i~i~g~~i~~--- 629 (1833)
+.|+++|++|.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++..
T Consensus 11 ~~l~i~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~ 86 (259)
T PRK14274 11 EVYQINGMNLWYGQ----HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV 86 (259)
T ss_pred ceEEEeeEEEEECC----eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccccc
Confidence 57999999999953 469999999999999999999999999999999999997 3 69999999998752
Q ss_pred cHHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCCc----ccccccCCCChhHHHHHH
Q 000224 630 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV-KEELLESVVAEMVDEVGLAD----KVNIVVRALSGGMKRKLS 704 (1833)
Q Consensus 630 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~v~~~l~~~~L~~----~~~~~~~~LSgGqkqrl~ 704 (1833)
+....|+.+||+||++.+++. |++||+.+.....+. ..++.+++++++++.+++.+ ..++++.+||||||||++
T Consensus 87 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~ 165 (259)
T PRK14274 87 DLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLC 165 (259)
T ss_pred CHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHH
Confidence 234567889999999988875 999999887655553 34555677889999999853 468899999999999999
Q ss_pred HHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 705 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 705 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
|||||+.+|+++||||||+|||+.+++.++++|+++++++|+|++||+++++..+|||+++|++|++++.|++.++.+
T Consensus 166 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 243 (259)
T PRK14274 166 IARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFS 243 (259)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhh
Confidence 999999999999999999999999999999999999878999999999999999999999999999999999887653
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=393.88 Aligned_cols=221 Identities=24% Similarity=0.394 Sum_probs=199.3
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHHhhc
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 636 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~ 636 (1833)
+.++++|+++.|++. .+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +....++
T Consensus 6 ~~l~i~~l~~~~~~~--~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (269)
T PRK13648 6 SIIVFKNVSFQYQSD--ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRK 83 (269)
T ss_pred ceEEEEEEEEEcCCC--CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHh
Confidence 469999999999642 2359999999999999999999999999999999999999999999999998853 4456778
Q ss_pred ceEEEccCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcE
Q 000224 637 GLGVCPQYDI-LFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 715 (1833)
Q Consensus 637 ~ig~~~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 715 (1833)
.+|||||++. +++..|+.+|+.+.....+.+.+...+++.++++.+|+.+..++.+.+||||||||++|||||+.+|++
T Consensus 84 ~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 163 (269)
T PRK13648 84 HIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSV 163 (269)
T ss_pred heeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 8999999984 677889999998876655666666677889999999999888999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 716 VILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 716 liLDEPtsgLD~~~r~~l~~~l~~~~-~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
|||||||+|||+.+++.++++|++++ + |+|||++||+++++.. ||||++|++|++++.|++.++.
T Consensus 164 llLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~ 230 (269)
T PRK13648 164 IILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIF 230 (269)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999985 3 8999999999999986 9999999999999999987764
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=392.78 Aligned_cols=224 Identities=25% Similarity=0.417 Sum_probs=196.6
Q ss_pred eEEEEeeEEEecCCC-----CcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-c--
Q 000224 559 CIQIRKLHKVYATKR-----GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-D-- 630 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~-----~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~-- 630 (1833)
.|+++||+|.|+... +++.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 488999999996321 13579999999999999999999999999999999999999999999999998753 1
Q ss_pred -HHHhhcceEEEccCC--CCCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCC-cccccccCCCChhHHHHHHH
Q 000224 631 -MDEIRKGLGVCPQYD--ILFPELTVREHLEMFAVL-KGVKEELLESVVAEMVDEVGLA-DKVNIVVRALSGGMKRKLSL 705 (1833)
Q Consensus 631 -~~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~-~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSgGqkqrl~l 705 (1833)
....|+.+||+||++ .+++.+||+||+.+.... .+...+..++++.++++.+|+. ...++++.+||||||||++|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l 161 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 123567899999997 467789999999876542 3444445567889999999996 67899999999999999999
Q ss_pred HHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 706 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 706 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
||||+.+|++|||||||+|||+.+++.++++|++++ + |+|||++||+++++..+|||+++|++|+++..|++.++.+
T Consensus 162 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (265)
T TIGR02769 162 ARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLS 240 (265)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcC
Confidence 999999999999999999999999999999999985 3 8999999999999999999999999999999999887753
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-41 Score=387.20 Aligned_cols=214 Identities=29% Similarity=0.475 Sum_probs=189.3
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cH-HHhhcc
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DM-DEIRKG 637 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~-~~~r~~ 637 (1833)
|+++||++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. +. ...++.
T Consensus 1 l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (230)
T TIGR03410 1 LEVSNLNVYYGQ----SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAG 76 (230)
T ss_pred CEEEeEEEEeCC----eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhC
Confidence 468999999953 469999999999999999999999999999999999999999999999998753 22 234578
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-CCcccccccCCCChhHHHHHHHHHHHhCCCcEE
Q 000224 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVG-LADKVNIVVRALSGGMKRKLSLGIALIGDSKVV 716 (1833)
Q Consensus 638 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~-L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vl 716 (1833)
+||+||++.+++.+|+.||+.+.....+.. .++.++++++.++ +.+..++++++||||||||++|||||+.+|+++
T Consensus 77 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~il 153 (230)
T TIGR03410 77 IAYVPQGREIFPRLTVEENLLTGLAALPRR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLL 153 (230)
T ss_pred eEEeccCCcccCCCcHHHHHHHHHHhcCcc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999998875544322 2334577788887 567789999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q 000224 717 ILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFL 780 (1833)
Q Consensus 717 iLDEPtsgLD~~~r~~l~~~l~~~~~--g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~L 780 (1833)
||||||+|||+.++++++++|+++++ |+|||++||+++++..+||||++|++|++++.|++.++
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 154 LLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999863 89999999999999999999999999999999998766
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-41 Score=381.54 Aligned_cols=211 Identities=26% Similarity=0.420 Sum_probs=183.2
Q ss_pred EEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccc
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1544 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~~~ 1544 (1833)
++++|++|+|++ +. .|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++..... .++.
T Consensus 1 i~~~~l~~~~~~------~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~-~~~~ 71 (211)
T cd03298 1 VRLDKIRFSYGE------QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP-ADRP 71 (211)
T ss_pred CEEEeEEEEeCC------Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH-hHcc
Confidence 468999999953 22 39999999999999999999999999999999999999999999998864322 3567
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000224 1545 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1624 (1833)
Q Consensus 1545 ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~vll 1624 (1833)
+||+||++.+++.+|++||+.+.........+..++++.++++.+++.+..++++.+||||||||++||+||+.+|++||
T Consensus 72 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~lll 151 (211)
T cd03298 72 VSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLL 151 (211)
T ss_pred EEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999989999999864332111112335567889999999988899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEec
Q 000224 1625 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1685 (1833)
Q Consensus 1625 LDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g 1685 (1833)
|||||+|||+.+++.+++.|++++++.| +|||++||+++++..+|||+++|++|++++.|
T Consensus 152 lDEP~~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 152 LDEPFAALDPALRAEMLDLVLDLHAETK-MTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999864444 68999999999999999999999999998754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=393.73 Aligned_cols=225 Identities=28% Similarity=0.390 Sum_probs=197.7
Q ss_pred ceEEEEeeEEEecCCC-----CcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cH
Q 000224 558 RCIQIRKLHKVYATKR-----GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DM 631 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~-----~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~ 631 (1833)
..|+++||+|+|+.+. +.+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 3699999999996321 13469999999999999999999999999999999999999999999999998853 23
Q ss_pred HHhhcceEEEccCCC--CCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCC-cccccccCCCChhHHHHHHHHH
Q 000224 632 DEIRKGLGVCPQYDI--LFPELTVREHLEMFAVLK-GVKEELLESVVAEMVDEVGLA-DKVNIVVRALSGGMKRKLSLGI 707 (1833)
Q Consensus 632 ~~~r~~ig~~~Q~~~--l~~~lTv~e~l~~~~~~~-~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSgGqkqrl~lA~ 707 (1833)
...++.+|||||++. +++.+|+.+++.+..... +....+.++++.++++.+||. +..++.+.+||||||||++||+
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lar 162 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLAR 162 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHH
Confidence 344568999999974 678889999998765543 445555667889999999995 6678889999999999999999
Q ss_pred HHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 708 ALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 708 al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~--~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
||+.+|++|||||||+|||+.+++.++++|++++ .|+|||++||+++++..+|||+++|++|+++..|++.++..
T Consensus 163 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 239 (267)
T PRK15112 163 ALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLA 239 (267)
T ss_pred HHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhc
Confidence 9999999999999999999999999999999985 38999999999999999999999999999999999877754
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=382.68 Aligned_cols=209 Identities=25% Similarity=0.412 Sum_probs=183.9
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcceE
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 639 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 639 (1833)
|+++|+++.|++ +. .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++.+|
T Consensus 1 i~~~~l~~~~~~----~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~-~~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGE----QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAP-PADRPVS 73 (211)
T ss_pred CEEEeEEEEeCC----Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCC-HhHccEE
Confidence 468999999953 22 3999999999999999999999999999999999999999999999875322 2357899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEEe
Q 000224 640 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 719 (1833)
Q Consensus 640 ~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 719 (1833)
|++|++.+++.+|++||+.+.........+..++++.++++.+||.+..++++.+||||||||++|||||+.+|+++|||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllD 153 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLD 153 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999999987543211112334667899999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeec
Q 000224 720 EPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 775 (1833)
Q Consensus 720 EPtsgLD~~~r~~l~~~l~~~~--~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G 775 (1833)
|||+|||+.+++.++++|++++ .|+|||++||+++++..+|||+++|++|++++.|
T Consensus 154 EP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 154 EPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999985 3899999999999999999999999999998654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=387.31 Aligned_cols=217 Identities=28% Similarity=0.407 Sum_probs=191.9
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhc
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAAR 1542 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~~ 1542 (1833)
.++++|++|+|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .....+
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 76 (241)
T PRK14250 3 EIEFKEVSYSSFG------KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLR 76 (241)
T ss_pred eEEEEeEEEEeCC------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhh
Confidence 5889999999953 458999999999999999999999999999999999999999999999998854 334567
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHHHHHHHHhcCCC
Q 000224 1543 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1621 (1833)
Q Consensus 1543 ~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~kqrl~lA~al~~~p~ 1621 (1833)
+.+||+||++.+++ .|++||+.+....++. ..+++.++++.+++. +..++++.+||||||||++||+||+.+|+
T Consensus 77 ~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 151 (241)
T PRK14250 77 RKIGMVFQQPHLFE-GTVKDNIEYGPMLKGE----KNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPE 151 (241)
T ss_pred hcEEEEecCchhch-hhHHHHHhcchhhcCc----HHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 78999999998886 6999999865433321 234577889999996 57889999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1622 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1622 vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
+|||||||+|||+.+++.+++.|++++++.| +|||++||+++++..+||||++|++|+++..|+++++..
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~g-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (241)
T PRK14250 152 VLLLDEPTSALDPTSTEIIEELIVKLKNKMN-LTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221 (241)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhCC-CEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhc
Confidence 9999999999999999999999999864344 589999999999999999999999999999999988754
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=396.45 Aligned_cols=226 Identities=25% Similarity=0.370 Sum_probs=194.2
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC------C
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS------D 1537 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~------~ 1537 (1833)
.|+++|++|+|++... ....+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .
T Consensus 6 ~l~i~nl~~~~~~~~~-~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 6 DIILDNVSYTYAKKTP-FEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred eEEEEEEEEEeCCCCc-cccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 4899999999964210 01359999999999999999999999999999999999999999999999998742 2
Q ss_pred hHHhccceEEEecCCC--CCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHHHHHH
Q 000224 1538 PKAARRLIGYCPQFDA--LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAI 1614 (1833)
Q Consensus 1538 ~~~~~~~ig~~pQ~~~--l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~kqrl~lA~ 1614 (1833)
....++.|||+||++. +++ .|++||+.+.....+...++..+.+.++++.++|. +..++++.+||||||||++|||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lar 163 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG 163 (289)
T ss_pred HHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHH
Confidence 3456778999999963 444 69999998765444554444556678899999994 6789999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1615 AMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1615 al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
||+.+|++|||||||+|||+.+++.+++.|+++.++.| +|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 164 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (289)
T PRK13645 164 IIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYK-KRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFS 240 (289)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999864434 689999999999999999999999999999999988753
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=384.54 Aligned_cols=205 Identities=29% Similarity=0.489 Sum_probs=180.1
Q ss_pred EEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcceEEE
Q 000224 562 IRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVC 641 (1833)
Q Consensus 562 i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig~~ 641 (1833)
++||++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..++.+||+
T Consensus 2 ~~~l~~~~~~----~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~----~~~~~i~~v 73 (213)
T cd03235 2 VEDLTVSYGG----HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE----KERKRIGYV 73 (213)
T ss_pred cccceeEECC----EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH----HHHhheEEe
Confidence 6799999953 46999999999999999999999999999999999999999999999998763 356789999
Q ss_pred ccCCCCC--CCCCHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcE
Q 000224 642 PQYDILF--PELTVREHLEMFAVLKG----VKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 715 (1833)
Q Consensus 642 ~Q~~~l~--~~lTv~e~l~~~~~~~~----~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 715 (1833)
||++.++ ..+||+||+.+.....+ ...+..+++++++++.+|+.+..++++.+||||||||++|||||+.+|++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 153 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDL 153 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 9998763 34799999987543211 12234567789999999999888999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeec
Q 000224 716 VILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 775 (1833)
Q Consensus 716 liLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G 775 (1833)
|||||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++| +++.|
T Consensus 154 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 154 LLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999986 6899999999999999999999999886 55443
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=388.63 Aligned_cols=221 Identities=24% Similarity=0.400 Sum_probs=192.9
Q ss_pred cceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEEcCeeCCC
Q 000224 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY-----PTDGTAFIFGKDIRS 1536 (1833)
Q Consensus 1462 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~G~~i~~ 1536 (1833)
.++|+++|++++|++ +.+++++||+|++||++||+||||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 4 ~~~l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 77 (253)
T PRK14242 4 PPKMEARGLSFFYGD------FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYD 77 (253)
T ss_pred CcEEEEeeeEEEECC------eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccc
Confidence 367999999999953 459999999999999999999999999999999999974 689999999998853
Q ss_pred ---ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCC-hhhHHHHHHHHHHHcCCcc----ccCCCCCCCChhHHH
Q 000224 1537 ---DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVA-EYRMDDVVMEKLVEFDLLK----HAKKPSFTLSGGNKR 1608 (1833)
Q Consensus 1537 ---~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~-~~~~~~~~~~~l~~~~L~~----~~~~~~~~LSgG~kq 1608 (1833)
.....++++||+||++.+++ .|++||+.+....++.. .+..++++.++++.+++.+ ..++++.+|||||||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 156 (253)
T PRK14242 78 PHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQ 156 (253)
T ss_pred cccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHH
Confidence 23345778999999988887 59999998765555542 2334566788899999853 468889999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChh
Q 000224 1609 KLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1688 (1833)
Q Consensus 1609 rl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~ 1688 (1833)
||+|||||+.+|++|||||||+|||+.+++.+++.|++++ + + .|||++||+++++..+|||+++|++|++++.|+++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~-~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-A-R-YTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTE 233 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-C-CeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999984 3 4 58999999999999999999999999999999998
Q ss_pred HHHh
Q 000224 1689 HLKT 1692 (1833)
Q Consensus 1689 ~l~~ 1692 (1833)
++.+
T Consensus 234 ~~~~ 237 (253)
T PRK14242 234 QIFT 237 (253)
T ss_pred HHHc
Confidence 8754
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=352.25 Aligned_cols=222 Identities=25% Similarity=0.464 Sum_probs=201.3
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcce
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 638 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~i 638 (1833)
.+.+.+++.+|+++. +.+++|+|++|.+||.++++||+|||||||+|+++|+.+|+.|+|.++|..++.+-. .=
T Consensus 3 ~l~~~~~sl~y~g~~--~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga----er 76 (259)
T COG4525 3 MLNVSHLSLSYEGKP--RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA----ER 76 (259)
T ss_pred eeehhheEEecCCcc--hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc----cc
Confidence 366788999997653 569999999999999999999999999999999999999999999999998864321 24
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEE
Q 000224 639 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVIL 718 (1833)
Q Consensus 639 g~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliL 718 (1833)
|+|+|++.|+|.+|+.||++|+.+++|+++.+..+.+.+++..+||++..++.+.+||||||||+.|||||+.+|++|+|
T Consensus 77 gvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlL 156 (259)
T COG4525 77 GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLL 156 (259)
T ss_pred eeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHH-h-CCcEEEEEcCCHHHHHhhcCEEEEee--CCEEEeecCHHHHHhhhCCc
Q 000224 719 DEPTSGMDPYSMRLTWQLIKKI-K-KGRIILLTTHSMDEAEELGDRIAIMA--NGSLKCCGSSLFLKHQYGVG 787 (1833)
Q Consensus 719 DEPtsgLD~~~r~~l~~~l~~~-~-~g~tiil~tH~~~e~~~l~Dri~im~--~G~l~~~G~~~~Lk~~~g~g 787 (1833)
|||+++||.-+|+++.++|.++ + .|+.++++||+++||.-+|+|+++|+ .|+++..=++.+= ++|-.|
T Consensus 157 DEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~df~-rR~aag 228 (259)
T COG4525 157 DEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLDFA-RRYAAG 228 (259)
T ss_pred cCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCCHH-HHhhcC
Confidence 9999999999999999999886 3 49999999999999999999999999 6899887666543 344333
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=391.13 Aligned_cols=220 Identities=27% Similarity=0.406 Sum_probs=196.7
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCC-----CCcceEEEcCccCCc---
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP-----PTTGDALVFGKNITA--- 629 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~g~~i~~--- 629 (1833)
..++++|+++.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 12 ~~l~~~~l~~~~~~----~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 12 SKIQVRNLNFYYGK----FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred ceEEEEEEEEEeCC----eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 46999999999953 369999999999999999999999999999999999986 589999999998742
Q ss_pred cHHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHH
Q 000224 630 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLK-GVKEELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLS 704 (1833)
Q Consensus 630 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~-~~~~~~~~~~v~~~l~~~~L~----~~~~~~~~~LSgGqkqrl~ 704 (1833)
+....|+++||+||++.+++ .|++||+.+..... +.+.++.+++++++++.+++. +..++.+.+||||||||++
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 166 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLC 166 (260)
T ss_pred chHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHH
Confidence 33456788999999998887 79999998865543 456666677899999999984 4568889999999999999
Q ss_pred HHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 705 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 705 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
|||||+.+|++|||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++|+++..|++.++..
T Consensus 167 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 244 (260)
T PRK10744 167 IARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFT 244 (260)
T ss_pred HHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999999999778899999999999999999999999999999999877643
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=388.11 Aligned_cols=220 Identities=21% Similarity=0.344 Sum_probs=194.1
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEEcCeeCCC-C
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP-----TDGTAFIFGKDIRS-D 1537 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~G~~i~~-~ 1537 (1833)
+++++|++|+|++ +.+++|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++.. .
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 76 (250)
T PRK14247 3 KIEIRDLKVSFGQ------VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76 (250)
T ss_pred eEEEEeeEEEECC------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCC
Confidence 5899999999953 4599999999999999999999999999999999999974 79999999998864 3
Q ss_pred hHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCC--ChhhHHHHHHHHHHHcCCcc----ccCCCCCCCChhHHHHHH
Q 000224 1538 PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGV--AEYRMDDVVMEKLVEFDLLK----HAKKPSFTLSGGNKRKLS 1611 (1833)
Q Consensus 1538 ~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~--~~~~~~~~~~~~l~~~~L~~----~~~~~~~~LSgG~kqrl~ 1611 (1833)
....++.|||+||++.+++.+|++||+.+.....+. +..+..+.+.++++.++|.+ ..++++.+||||||||++
T Consensus 77 ~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ 156 (250)
T PRK14247 77 VIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLC 156 (250)
T ss_pred HHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHH
Confidence 445677899999999888889999999876544332 23344566788999999853 468999999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHH
Q 000224 1612 VAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1691 (1833)
Q Consensus 1612 lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~ 1691 (1833)
|||||+.+|++|||||||+|||+.+++.+++.|++++ + + +|||++||+++++..+|||+++|++|++++.|+++++.
T Consensus 157 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~-~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 157 IARALAFQPEVLLADEPTANLDPENTAKIESLFLELK-K-D-MTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-C-CEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 9999999999999999999999999999999999984 3 4 68999999999999999999999999999999998875
Q ss_pred h
Q 000224 1692 T 1692 (1833)
Q Consensus 1692 ~ 1692 (1833)
+
T Consensus 234 ~ 234 (250)
T PRK14247 234 T 234 (250)
T ss_pred c
Confidence 4
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=401.61 Aligned_cols=228 Identities=21% Similarity=0.304 Sum_probs=193.6
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC----CCceEEEEcCeeCCC-C
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY----PTDGTAFIFGKDIRS-D 1537 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~----p~~G~i~i~G~~i~~-~ 1537 (1833)
++|+++||+|.|+.+. +...||+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++.. .
T Consensus 2 ~~L~v~~l~~~y~~~~--~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~ 79 (330)
T PRK15093 2 PLLDIRNLTIEFKTSD--GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLS 79 (330)
T ss_pred CeEEEeeeEEEEeCCC--CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCC
Confidence 3689999999996421 23569999999999999999999999999999999999997 589999999999864 2
Q ss_pred hHH----hccceEEEecCCC--CCCCCCHHHHHHHHHHH---cCC---ChhhHHHHHHHHHHHcCCcc---ccCCCCCCC
Q 000224 1538 PKA----ARRLIGYCPQFDA--LLEYLTVQEHLELYARI---KGV---AEYRMDDVVMEKLVEFDLLK---HAKKPSFTL 1602 (1833)
Q Consensus 1538 ~~~----~~~~ig~~pQ~~~--l~~~lTv~e~l~~~~~~---~g~---~~~~~~~~~~~~l~~~~L~~---~~~~~~~~L 1602 (1833)
... .++.|||+||++. +.+.+|+.+++...... .+. ...+.++++.++++.+||.+ ..++++.+|
T Consensus 80 ~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~L 159 (330)
T PRK15093 80 PRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYEL 159 (330)
T ss_pred HHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhC
Confidence 222 2357999999974 67889999999753221 111 11234567889999999974 468999999
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEE
Q 000224 1603 SGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLR 1682 (1833)
Q Consensus 1603 SgG~kqrl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~ 1682 (1833)
||||||||+||+||+.+|++|||||||+|||+.+++.++++|+++.++.| .|||++|||++++..+||||++|.+|+++
T Consensus 160 SgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g-~tii~itHdl~~v~~~~dri~vm~~G~iv 238 (330)
T PRK15093 160 TEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNN-TTILLISHDLQMLSQWADKINVLYCGQTV 238 (330)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcC-CEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999965444 69999999999999999999999999999
Q ss_pred EecChhHHHhh
Q 000224 1683 CIGSPQHLKTR 1693 (1833)
Q Consensus 1683 ~~g~~~~l~~~ 1693 (1833)
+.|+++++.+.
T Consensus 239 e~g~~~~i~~~ 249 (330)
T PRK15093 239 ETAPSKELVTT 249 (330)
T ss_pred EECCHHHHHhC
Confidence 99999888653
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=385.09 Aligned_cols=219 Identities=23% Similarity=0.397 Sum_probs=190.6
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhcc
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1543 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~~ 1543 (1833)
+++++||+|+|++ + ..++||++++||++||+||||||||||+++|+|+++|++|+|.++|.++..... .++
T Consensus 1 ~l~~~~l~~~~~~------~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~ 71 (232)
T PRK10771 1 MLKLTDITWLYHH------L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP-SRR 71 (232)
T ss_pred CeEEEEEEEEECC------c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh-hhc
Confidence 4789999999953 2 238999999999999999999999999999999999999999999998764322 356
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEE
Q 000224 1544 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1623 (1833)
Q Consensus 1544 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~vl 1623 (1833)
.+||+||++.+++.+|+.||+.+.........+..++++.++++.+++.+..++++.+||||||||++||+|++.+|+++
T Consensus 72 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 151 (232)
T PRK10771 72 PVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPIL 151 (232)
T ss_pred cEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 79999999999998999999976432111112233556888999999998899999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1624 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1624 lLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
||||||+|||+.+++.+++.|+++.++.| +|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 152 lLDEP~~gLD~~~~~~~~~~l~~~~~~~~-~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 152 LLDEPFSALDPALRQEMLTLVSQVCQERQ-LTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219 (232)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999864434 589999999999999999999999999999999988764
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=393.59 Aligned_cols=220 Identities=24% Similarity=0.352 Sum_probs=195.0
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHHhhc
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 636 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~ 636 (1833)
..++++||++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .....++
T Consensus 10 ~~l~i~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 85 (265)
T PRK10575 10 TTFALRNVSFRVPG----RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR 85 (265)
T ss_pred ceEEEeeEEEEECC----EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhh
Confidence 56999999999953 469999999999999999999999999999999999999999999999998743 3445677
Q ss_pred ceEEEccCCCCCCCCCHHHHHHHHHH-hcC---CCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCC
Q 000224 637 GLGVCPQYDILFPELTVREHLEMFAV-LKG---VKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGD 712 (1833)
Q Consensus 637 ~ig~~~Q~~~l~~~lTv~e~l~~~~~-~~~---~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~ 712 (1833)
.+||+||++.+++.+|+.||+.+... ..+ ......+++++++++.+++.+..++++++|||||||||+|||||+.+
T Consensus 86 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~ 165 (265)
T PRK10575 86 KVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQD 165 (265)
T ss_pred heEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 89999999888889999999987431 111 11233456789999999999888999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 713 SKVVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 713 p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
|++|||||||+|||+.+++.++++|++++ + |+|||++||+++++..+||||++|++|+++..|++.++.
T Consensus 166 p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 166 SRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999999999999999999999999985 3 899999999999999999999999999999999876653
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=383.83 Aligned_cols=220 Identities=33% Similarity=0.522 Sum_probs=197.1
Q ss_pred EEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccc
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1544 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~~~ 1544 (1833)
|+++|++++|++ +.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++..... .++.
T Consensus 1 l~~~~l~~~~~~------~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~~ 73 (232)
T cd03300 1 IELENVSKFYGG------FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP-HKRP 73 (232)
T ss_pred CEEEeEEEEeCC------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh-hhcc
Confidence 468999999953 469999999999999999999999999999999999999999999999998865332 3578
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000224 1545 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1624 (1833)
Q Consensus 1545 ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~vll 1624 (1833)
+||+||++.+++.+|++||+.+....++.......+.+.++++.+++.+..++.+.+||||||||++|||||+.+|+++|
T Consensus 74 i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~lll 153 (232)
T cd03300 74 VNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLL 153 (232)
T ss_pred eEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999998889999999876655555545556677889999999988999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1625 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1625 LDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
|||||+|||+.+++.+++.|++++++.| +|||++||+++++..+|||+++|++|++.+.|+++++..
T Consensus 154 lDEP~~gLD~~~~~~l~~~l~~~~~~~~-~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~ 220 (232)
T cd03300 154 LDEPLGALDLKLRKDMQLELKRLQKELG-ITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE 220 (232)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHh
Confidence 9999999999999999999999864334 589999999999999999999999999999999887764
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=383.19 Aligned_cols=230 Identities=28% Similarity=0.488 Sum_probs=206.0
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCC-C----CcceEEEcCccCCc-c---
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP-P----TTGDALVFGKNITA-D--- 630 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~-p----~~G~i~i~g~~i~~-~--- 630 (1833)
++++||+..|....+...||+||||++++||++||+|++|||||||.+.|.|+++ | .+|+|.++|.|+.. +
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 6899999999887667889999999999999999999999999999999999998 4 57999999998853 2
Q ss_pred HHHhh-cceEEEccCC--CCCCCCCHHHHHHHHHHhcC-C-CHHHHHHHHHHHHHHcCCCc---ccccccCCCChhHHHH
Q 000224 631 MDEIR-KGLGVCPQYD--ILFPELTVREHLEMFAVLKG-V-KEELLESVVAEMVDEVGLAD---KVNIVVRALSGGMKRK 702 (1833)
Q Consensus 631 ~~~~r-~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~~-~-~~~~~~~~v~~~l~~~~L~~---~~~~~~~~LSgGqkqr 702 (1833)
+.++| +.|+++||++ .|.|-+||.+.+.-..+..+ . .+++.++++.++|+.+||++ ..+.++++||||||||
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQR 161 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQR 161 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHH
Confidence 23455 6799999997 68999999999876666543 3 46678899999999999986 4599999999999999
Q ss_pred HHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q 000224 703 LSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFL 780 (1833)
Q Consensus 703 l~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~--~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~L 780 (1833)
|.||+||+.+|++||.||||++||+..+.++.++|++++ .|.|+|+||||+..+..+||||+||..|++++.|+..++
T Consensus 162 V~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i 241 (316)
T COG0444 162 VMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEI 241 (316)
T ss_pred HHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHH
Confidence 999999999999999999999999999999999999996 489999999999999999999999999999999999988
Q ss_pred HhhhCCcEE
Q 000224 781 KHQYGVGYT 789 (1833)
Q Consensus 781 k~~~g~gy~ 789 (1833)
.+...+-|+
T Consensus 242 ~~~P~HPYT 250 (316)
T COG0444 242 FKNPKHPYT 250 (316)
T ss_pred hcCCCChHH
Confidence 776666664
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=387.74 Aligned_cols=219 Identities=28% Similarity=0.422 Sum_probs=195.2
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCC---CCcceEEEcCccCCc-cHHHh
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP---PTTGDALVFGKNITA-DMDEI 634 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~---p~~G~i~i~g~~i~~-~~~~~ 634 (1833)
.|+++|+++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. +....
T Consensus 2 ~~~~~~l~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~ 77 (246)
T PRK14269 2 IAKTTNLNLFYGK----KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77 (246)
T ss_pred ceeeeeeEEEECC----EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHH
Confidence 4789999999953 469999999999999999999999999999999999984 799999999998853 34556
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHHHHHH
Q 000224 635 RKGLGVCPQYDILFPELTVREHLEMFAVLKGV--KEELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLSLGIA 708 (1833)
Q Consensus 635 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~--~~~~~~~~v~~~l~~~~L~----~~~~~~~~~LSgGqkqrl~lA~a 708 (1833)
|+.+||+||++.+|+ .|++||+.++....+. ..+..++++.++++.++|. +..++.+.+||||||||++||||
T Consensus 78 ~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 156 (246)
T PRK14269 78 RKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARA 156 (246)
T ss_pred hhhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHH
Confidence 788999999999987 6999999987655543 2244566788999999995 34688899999999999999999
Q ss_pred HhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 709 LIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 709 l~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
|+.+|+++||||||+|||+.+++.+.+.|+++++|+|||++||+++++..+|||+++|++|+++..|++.++..
T Consensus 157 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 157 LAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999998778999999999999999999999999999999999877653
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=349.50 Aligned_cols=219 Identities=28% Similarity=0.456 Sum_probs=194.2
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhcc
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1543 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~~ 1543 (1833)
++.+++++..|+. .==..+++|++||+++|+||+|||||||+++|+|.+.|.+|+|.|+|+|....+. .+|
T Consensus 1 ~l~L~~V~~~y~~--------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P-~~R 71 (231)
T COG3840 1 MLALDDVRFSYGH--------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP-AER 71 (231)
T ss_pred CccccceEEeeCc--------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCc-ccC
Confidence 3568899999963 2235789999999999999999999999999999999999999999999865332 456
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCC-hhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCE
Q 000224 1544 LIGYCPQFDALLEYLTVQEHLELYARIKGVA-EYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPI 1622 (1833)
Q Consensus 1544 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~v 1622 (1833)
-+++++|++.||..+||.+|+.+... .|+. ..+.+++++.++.++||..+.++.+.+||||||||+++||+|+++-+|
T Consensus 72 PVSmlFQEnNLFaHLtV~qNigLGl~-P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~Pi 150 (231)
T COG3840 72 PVSMLFQENNLFAHLTVAQNIGLGLS-PGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPI 150 (231)
T ss_pred ChhhhhhccccchhhhhhhhhcccCC-cccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCe
Confidence 69999999999999999999987432 2322 233456788899999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000224 1623 VILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693 (1833)
Q Consensus 1623 llLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~ 1693 (1833)
|+||||+++|||.-|.+|..++.+++.+++ .|++++||..+++.+++||++++++|||.+.|+.+++.+.
T Consensus 151 lLLDEPFsALdP~LR~eMl~Lv~~l~~E~~-~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 151 LLLDEPFSALDPALRAEMLALVSQLCDERK-MTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred EEecCchhhcCHHHHHHHHHHHHHHHHhhC-CEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 999999999999999999999999987765 6999999999999999999999999999999999988764
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=394.93 Aligned_cols=221 Identities=28% Similarity=0.442 Sum_probs=199.3
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCc---ceEEEcCccCCc-cHHH
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTT---GDALVFGKNITA-DMDE 633 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~---G~i~i~g~~i~~-~~~~ 633 (1833)
..|+++|+++.|++. .+.+++|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++.. ....
T Consensus 4 ~~l~i~~l~~~~~~~--~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~ 81 (282)
T PRK13640 4 NIVEFKHVSFTYPDS--KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD 81 (282)
T ss_pred ceEEEEEEEEEcCCC--CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHH
Confidence 469999999999642 2359999999999999999999999999999999999999998 899999998854 3345
Q ss_pred hhcceEEEccCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCC
Q 000224 634 IRKGLGVCPQYDI-LFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGD 712 (1833)
Q Consensus 634 ~r~~ig~~~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~ 712 (1833)
.++++|||||++. +++..||.||+.+.....+.+.++.++++.++++.+||.+..++++++||||||||++||+||+.+
T Consensus 82 ~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~ 161 (282)
T PRK13640 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVE 161 (282)
T ss_pred HHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 6778999999984 677889999998876666777777778899999999999989999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 713 SKVVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 713 p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
|++|||||||+|||+.+++.++++|+++. + |+|||++||+++++. .|||+++|++|++++.|++.++.
T Consensus 162 P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 162 PKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999985 3 899999999999996 79999999999999999987764
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=394.11 Aligned_cols=222 Identities=26% Similarity=0.365 Sum_probs=199.2
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHHhhcc
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 637 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~ 637 (1833)
.++++||++.|++.. .+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .....++.
T Consensus 4 ~l~~~~l~~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 82 (277)
T PRK13642 4 ILEVENLVFKYEKES-DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82 (277)
T ss_pred eEEEEEEEEEcCCCC-cCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcc
Confidence 589999999996421 2459999999999999999999999999999999999999999999999998853 34456788
Q ss_pred eEEEccCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEE
Q 000224 638 LGVCPQYDI-LFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVV 716 (1833)
Q Consensus 638 ig~~~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vl 716 (1833)
+||+||++. +++..||.||+.+.....+...++..++++++++.+||.+..++++.+||||||||++|||||+.+|++|
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~ll 162 (277)
T PRK13642 83 IGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEII 162 (277)
T ss_pred eEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999974 5677899999987665556666666778999999999998899999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 717 ILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 717 iLDEPtsgLD~~~r~~l~~~l~~~~-~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
||||||+|||+.+++.++++|++++ + |+|||++||+++++. .||||++|++|++++.|++.++..
T Consensus 163 llDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~~ 229 (277)
T PRK13642 163 ILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIKEAAPSELFA 229 (277)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999985 3 899999999999997 599999999999999999877754
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=388.63 Aligned_cols=220 Identities=26% Similarity=0.423 Sum_probs=195.9
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCC--C---CcceEEEcCccCCc---c
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP--P---TTGDALVFGKNITA---D 630 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~--p---~~G~i~i~g~~i~~---~ 630 (1833)
.|+++|++|.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++.. .
T Consensus 4 ~l~~~nl~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 4 KVKLEQLNVHFGK----NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred EEEEEEEEEEeCC----eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 5899999999953 469999999999999999999999999999999999986 4 69999999998753 2
Q ss_pred HHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCCc----ccccccCCCChhHHHHHHH
Q 000224 631 MDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV-KEELLESVVAEMVDEVGLAD----KVNIVVRALSGGMKRKLSL 705 (1833)
Q Consensus 631 ~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~v~~~l~~~~L~~----~~~~~~~~LSgGqkqrl~l 705 (1833)
....|+.+||+||++.+++.+|+.||+.+.....+. +..+.++++.++++.+|+.. ..++.+.+||||||||++|
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~l 159 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCI 159 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHH
Confidence 345678899999999999999999999876554442 34455677899999999853 4578899999999999999
Q ss_pred HHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 706 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 706 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
||||+.+|++|||||||+|||+.++++++++|+++++++|||++||+++++..+|||+++|++|++++.|++.++..
T Consensus 160 aral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14256 160 ARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFT 236 (252)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999877899999999999999999999999999999999887754
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=402.34 Aligned_cols=225 Identities=24% Similarity=0.325 Sum_probs=194.8
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCC----CCcceEEEcCccCCc-cHH-
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP----PTTGDALVFGKNITA-DMD- 632 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~----p~~G~i~i~g~~i~~-~~~- 632 (1833)
.|+++||++.|+.+++.+.||+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. ...
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 58999999999754445679999999999999999999999999999999999997 589999999998853 222
Q ss_pred --Hh-hcceEEEccCCC--CCCCCCHHHHHHHHHHh---cCC---CHHHHHHHHHHHHHHcCCCc---ccccccCCCChh
Q 000224 633 --EI-RKGLGVCPQYDI--LFPELTVREHLEMFAVL---KGV---KEELLESVVAEMVDEVGLAD---KVNIVVRALSGG 698 (1833)
Q Consensus 633 --~~-r~~ig~~~Q~~~--l~~~lTv~e~l~~~~~~---~~~---~~~~~~~~v~~~l~~~~L~~---~~~~~~~~LSgG 698 (1833)
.. ++.|||+||++. +.+.+||.+++...... .+. ...+.++++.++|+.+||.+ ..++.+++||||
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG 162 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEG 162 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHH
Confidence 22 357999999985 67889999999764321 121 22345678899999999975 358899999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecC
Q 000224 699 MKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776 (1833)
Q Consensus 699 qkqrl~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~--g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~ 776 (1833)
|||||+|||||+.+|++|||||||+|||+.++++++++|+++++ |.|||++|||++++..+||||++|.+|++++.|+
T Consensus 163 ~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g~ 242 (330)
T PRK15093 163 ECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAP 242 (330)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999863 8999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 000224 777 SLFLKHQ 783 (1833)
Q Consensus 777 ~~~Lk~~ 783 (1833)
+.++...
T Consensus 243 ~~~i~~~ 249 (330)
T PRK15093 243 SKELVTT 249 (330)
T ss_pred HHHHHhC
Confidence 9887554
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=405.40 Aligned_cols=214 Identities=21% Similarity=0.365 Sum_probs=190.4
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-----h
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-----P 1538 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~-----~ 1538 (1833)
||++ ||+|+|++ +. + |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .
T Consensus 1 ~l~~-~l~k~~~~------~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~ 71 (352)
T PRK11144 1 MLEL-NFKQQLGD------LC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICL 71 (352)
T ss_pred CeEE-EEEEEeCC------EE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccc
Confidence 4677 99999963 22 3 89999999999999999999999999999999999999999999987531 2
Q ss_pred HHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhc
Q 000224 1539 KAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIG 1618 (1833)
Q Consensus 1539 ~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~ 1618 (1833)
...++++||+||++.+++.+|++||+.+... ...++++.++++.++|.+..++++.+|||||||||+|||||+.
T Consensus 72 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 72 PPEKRRIGYVFQDARLFPHYKVRGNLRYGMA------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred chhhCCEEEEcCCcccCCCCcHHHHHHhhhh------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 2346789999999999999999999986432 1224567889999999988999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000224 1619 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693 (1833)
Q Consensus 1619 ~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~ 1693 (1833)
+|++|||||||+|||+.+++.+++.|+++.++.| +|||++|||++++..+|||+++|++|+++..|+++++.++
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g-~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~ 219 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLAREIN-IPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWAS 219 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC-CeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhC
Confidence 9999999999999999999999999999865434 6899999999999999999999999999999999998765
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=387.64 Aligned_cols=219 Identities=29% Similarity=0.434 Sum_probs=195.4
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCC-----CcceEEEcCccCCc---
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP-----TTGDALVFGKNITA--- 629 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~g~~i~~--- 629 (1833)
+.++++|+++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++..
T Consensus 3 ~~l~~~~l~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 78 (251)
T PRK14270 3 IKMESKNLNLWYGE----KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDV 78 (251)
T ss_pred cEEEEEEeEEEECC----eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccc
Confidence 46899999999953 4699999999999999999999999999999999999875 89999999998853
Q ss_pred cHHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHH
Q 000224 630 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV-KEELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLS 704 (1833)
Q Consensus 630 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~v~~~l~~~~L~----~~~~~~~~~LSgGqkqrl~ 704 (1833)
+....++.+||+||++.+++ +|++||+.+.....+. ...+.++++.++++.+|+. +..++.+.+||||||||++
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 157 (251)
T PRK14270 79 DVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLC 157 (251)
T ss_pred cHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHH
Confidence 23456788999999999887 8999999987665554 3445567788999999884 3568889999999999999
Q ss_pred HHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 705 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 705 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
|||||+.+|+++||||||+|||+.++++++++|+++++++|||++||+++++..+|||+++|++|++++.|++.++.
T Consensus 158 laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 158 IARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 99999999999999999999999999999999999977799999999999999999999999999999999987764
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=385.41 Aligned_cols=218 Identities=27% Similarity=0.427 Sum_probs=197.8
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcceE
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 639 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 639 (1833)
++++|+++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... ...++.+|
T Consensus 1 i~i~~l~~~~~~----~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~-~~~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS----FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRV-HARDRKIG 75 (237)
T ss_pred CEEEEEEEEECC----eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcC-ChhhcCEE
Confidence 468999999953 4699999999999999999999999999999999999999999999999987532 23467899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEEe
Q 000224 640 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 719 (1833)
Q Consensus 640 ~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 719 (1833)
||||++.+|+.+|+.||+.+.....+.......++++++++.+++.+..++.+.+||||||||++||+||+.+|+++|||
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllD 155 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLD 155 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999999987766555555555678899999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 720 EPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 720 EPtsgLD~~~r~~l~~~l~~~~~--g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
|||+|||+.+++.++++|+++++ |+|||++||+++++..+|||+++|++|++++.|+++++++
T Consensus 156 EP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 156 EPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 99999999999999999999853 8999999999999999999999999999999999888754
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=389.16 Aligned_cols=220 Identities=25% Similarity=0.400 Sum_probs=193.3
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhc
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAAR 1542 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~~ 1542 (1833)
+++++|++++|++ +.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++.. .....+
T Consensus 2 ~l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (255)
T PRK11231 2 TLRTENLTVGYGT------KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLA 75 (255)
T ss_pred EEEEEeEEEEECC------EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHh
Confidence 5899999999952 469999999999999999999999999999999999999999999999998754 334556
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHHH----HcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhc
Q 000224 1543 RLIGYCPQFDALLEYLTVQEHLELYAR----IKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIG 1618 (1833)
Q Consensus 1543 ~~ig~~pQ~~~l~~~lTv~e~l~~~~~----~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~ 1618 (1833)
+.+||+||++.+++.+|+.||+.+... ..+.......+.+.++++.+++.+..++++.+|||||||||+||+||+.
T Consensus 76 ~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 155 (255)
T PRK11231 76 RRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQ 155 (255)
T ss_pred hheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhc
Confidence 789999999988888999999986421 1222223344567888999999888999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHH
Q 000224 1619 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1691 (1833)
Q Consensus 1619 ~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~ 1691 (1833)
+|++|||||||+|||+.+++.+++.|+++++ +| +|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 156 ~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~~-~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 156 DTPVVLLDEPTTYLDINHQVELMRLMRELNT-QG-KTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 9999999999999999999999999999853 44 58999999999999999999999999999999887764
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=387.84 Aligned_cols=220 Identities=25% Similarity=0.419 Sum_probs=192.8
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEEcCeeCCC-
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP-----TDGTAFIFGKDIRS- 1536 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~G~~i~~- 1536 (1833)
.+++++|++++|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++..
T Consensus 6 ~~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 79 (254)
T PRK14273 6 AIIETENLNLFYTD------FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSN 79 (254)
T ss_pred ceEEEeeeEEEeCC------ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccc
Confidence 47999999999953 4589999999999999999999999999999999999997 58999999998753
Q ss_pred --ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCC-ChhhHHHHHHHHHHHcCC----ccccCCCCCCCChhHHHH
Q 000224 1537 --DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGV-AEYRMDDVVMEKLVEFDL----LKHAKKPSFTLSGGNKRK 1609 (1833)
Q Consensus 1537 --~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~-~~~~~~~~~~~~l~~~~L----~~~~~~~~~~LSgG~kqr 1609 (1833)
.....+++|||+||++.+++ +|++||+.+.....+. .....++.+.++++.+++ .+..++++++||||||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qr 158 (254)
T PRK14273 80 NFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQR 158 (254)
T ss_pred cccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHH
Confidence 23346778999999988875 8999999886554443 233345667888888887 345788999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhH
Q 000224 1610 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1689 (1833)
Q Consensus 1610 l~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~ 1689 (1833)
++|||||+.+|++|||||||+|||+.+++.++++|++++ + + +|||++||+++++..+|||+++|++|++++.|++++
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~-~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 235 (254)
T PRK14273 159 LCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-E-S-YTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDE 235 (254)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-c-C-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999984 3 4 589999999999999999999999999999999988
Q ss_pred HHh
Q 000224 1690 LKT 1692 (1833)
Q Consensus 1690 l~~ 1692 (1833)
+.+
T Consensus 236 ~~~ 238 (254)
T PRK14273 236 LFF 238 (254)
T ss_pred HHh
Confidence 864
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=368.63 Aligned_cols=237 Identities=29% Similarity=0.437 Sum_probs=215.1
Q ss_pred eEEEEeeEEEecC-----------------CCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEE
Q 000224 559 CIQIRKLHKVYAT-----------------KRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDAL 621 (1833)
Q Consensus 559 ~i~i~~l~k~y~~-----------------~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~ 621 (1833)
+|.++||+|.|.- +.....||+|+||+|++|++++++|+|||||||++|||+|++.|++|.|.
T Consensus 3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~ 82 (325)
T COG4586 3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR 82 (325)
T ss_pred eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEE
Confidence 4666677776642 11235699999999999999999999999999999999999999999999
Q ss_pred EcCccCCccHHHhhcceEEEc-cCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHH
Q 000224 622 VFGKNITADMDEIRKGLGVCP-QYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMK 700 (1833)
Q Consensus 622 i~g~~i~~~~~~~r~~ig~~~-Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqk 700 (1833)
|+|++...+.++.-+++|+|. |.-.+|.++-+.|.+.....++.++.++.+++.+.+.+.++|+...+.+++.||-|||
T Consensus 83 V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqR 162 (325)
T COG4586 83 VNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQR 162 (325)
T ss_pred ecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHH
Confidence 999998776666667788875 7777888888999999988899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHH
Q 000224 701 RKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSL 778 (1833)
Q Consensus 701 qrl~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~--~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~ 778 (1833)
+|+.||.||+++|+||+|||||-|||..++..+.+.|+++. .+.||++|||+|+.+..+||||+.|+.|+++..|+..
T Consensus 163 mraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~ 242 (325)
T COG4586 163 MRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLA 242 (325)
T ss_pred HHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHH
Confidence 99999999999999999999999999999999999999985 4899999999999999999999999999999999999
Q ss_pred HHHhhhCCcEEEEEEec
Q 000224 779 FLKHQYGVGYTLTLVKS 795 (1833)
Q Consensus 779 ~Lk~~~g~gy~l~~~~~ 795 (1833)
.|+.+||..-.+.....
T Consensus 243 ~l~~~f~~~k~~~~el~ 259 (325)
T COG4586 243 QLQEQFGPYKEFSVELK 259 (325)
T ss_pred HHHHHhCCceEEEEEEc
Confidence 99999999877776554
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=381.86 Aligned_cols=189 Identities=24% Similarity=0.359 Sum_probs=152.6
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhcc
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1543 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~~ 1543 (1833)
.++-.+++|.|++ . .|+-=.=++..||++|++||||-||||+.++|+|.++|++|. ..+ -
T Consensus 342 lv~y~~~~k~~g~------F-~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~---------~ 401 (591)
T COG1245 342 LVEYPDLKKTYGD------F-KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED---------L 401 (591)
T ss_pred eeecchheeecCc------e-EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc---------c
Confidence 4556667777752 1 232223456789999999999999999999999999999998 222 2
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEE
Q 000224 1544 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1623 (1833)
Q Consensus 1544 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~vl 1623 (1833)
+|+|=||.-.-..+.||++.|.-...-. ..... .-.++++-++|++..++++.+||||+.|||+||.||..++++.
T Consensus 402 ~vSyKPQyI~~~~~gtV~~~l~~~~~~~-~~~s~---~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlY 477 (591)
T COG1245 402 KVSYKPQYISPDYDGTVEDLLRSAIRSA-FGSSY---FKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLY 477 (591)
T ss_pred eEeecceeecCCCCCcHHHHHHHhhhhh-cccch---hHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEE
Confidence 4899999754445689998776433221 22211 2346788899999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEE
Q 000224 1624 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMV 1677 (1833)
Q Consensus 1624 lLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~ 1677 (1833)
+||||++.||.+.|-.+-+.|+++.... +.|.+++-||+-.+.-++||+++..
T Consensus 478 llDEPSA~LDvEqR~~vakvIRR~~e~~-~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 478 LLDEPSAYLDVEQRIIVAKVIRRFIENN-EKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred EecCchhhccHHHHHHHHHHHHHHHhhc-CceEEEEecceehhhhhhceEEEEe
Confidence 9999999999999999999999997655 4689999999999999999999885
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=387.36 Aligned_cols=225 Identities=24% Similarity=0.346 Sum_probs=193.0
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCC--CCCcceEEEcCccCCc-cHHH-hh
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLI--PPTTGDALVFGKNITA-DMDE-IR 635 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~--~p~~G~i~i~g~~i~~-~~~~-~r 635 (1833)
|+++||+|.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+. +|++|+|.++|.++.. .... .+
T Consensus 1 l~~~~l~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (243)
T TIGR01978 1 LKIKDLHVSVED----KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERAR 76 (243)
T ss_pred CeEeeEEEEECC----EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhc
Confidence 468999999952 46999999999999999999999999999999999995 7999999999998753 2222 34
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHcCCC-cccccccC-CCChhHHHHHHHH
Q 000224 636 KGLGVCPQYDILFPELTVREHLEMFAVLKG-------VKEELLESVVAEMVDEVGLA-DKVNIVVR-ALSGGMKRKLSLG 706 (1833)
Q Consensus 636 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~-------~~~~~~~~~v~~~l~~~~L~-~~~~~~~~-~LSgGqkqrl~lA 706 (1833)
..++|+||++.+++.+|++|++.+...... .+..+..+++.++++.+||. +..++++. +|||||||||+||
T Consensus 77 ~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la 156 (243)
T TIGR01978 77 AGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEIL 156 (243)
T ss_pred cceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHH
Confidence 569999999999999999999987644321 12334557789999999997 45688887 5999999999999
Q ss_pred HHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhh-cCEEEEeeCCEEEeecCHHHHHhhh
Q 000224 707 IALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEEL-GDRIAIMANGSLKCCGSSLFLKHQY 784 (1833)
Q Consensus 707 ~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l-~Dri~im~~G~l~~~G~~~~Lk~~~ 784 (1833)
|||+.+|++|||||||+|||+.+++.++++|++++ +|+|||++||+++++..+ |||+++|++|+++..|+++++..--
T Consensus 157 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 236 (243)
T TIGR01978 157 QMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAKELE 236 (243)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHhcccc
Confidence 99999999999999999999999999999999986 589999999999999998 8999999999999999987665433
Q ss_pred CCcE
Q 000224 785 GVGY 788 (1833)
Q Consensus 785 g~gy 788 (1833)
..+|
T Consensus 237 ~~~~ 240 (243)
T TIGR01978 237 EKGY 240 (243)
T ss_pred ccCc
Confidence 3333
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=383.65 Aligned_cols=220 Identities=27% Similarity=0.435 Sum_probs=196.3
Q ss_pred EEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccc
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1544 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~~~ 1544 (1833)
++++|++++|++ +.+++|+||++.+||++||+||||||||||+++|+|+++|++|+|.++|.++.... ..++.
T Consensus 1 i~i~~l~~~~~~------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~-~~~~~ 73 (237)
T TIGR00968 1 IEIANISKRFGS------FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVH-ARDRK 73 (237)
T ss_pred CEEEEEEEEECC------eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC-hhhcC
Confidence 468999999963 46999999999999999999999999999999999999999999999999885422 34678
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000224 1545 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1624 (1833)
Q Consensus 1545 ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~vll 1624 (1833)
+||+||++.+++.+|+.||+.+....++.......+.+.++++.+++.+..++.+.+||||||||++||+||+.+|++++
T Consensus 74 i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~lll 153 (237)
T TIGR00968 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLL 153 (237)
T ss_pred EEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999889999999876555554444445667889999999988999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1625 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1625 LDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
|||||+|||+.+++.+++.|++++++.+ +|||++||+++++..+|||+++|++|++++.|+++++++
T Consensus 154 lDEP~~~LD~~~~~~~~~~l~~~~~~~~-~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 154 LDEPFGALDAKVRKELRSWLRKLHDEVH-VTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999999999999999864324 689999999999999999999999999999999988864
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=388.73 Aligned_cols=222 Identities=25% Similarity=0.423 Sum_probs=193.9
Q ss_pred CcceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEEcCeeCC
Q 000224 1461 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP-----TDGTAFIFGKDIR 1535 (1833)
Q Consensus 1461 ~~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~G~~i~ 1535 (1833)
.+..|+++|++|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|+++.
T Consensus 16 ~~~~l~~~nl~~~~~~------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~ 89 (267)
T PRK14235 16 TEIKMRARDVSVFYGE------KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIY 89 (267)
T ss_pred CCceEEEEeEEEEECC------EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECc
Confidence 3458999999999963 4599999999999999999999999999999999999975 8999999999985
Q ss_pred C---ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCC--ChhhHHHHHHHHHHHcCCcc----ccCCCCCCCChhH
Q 000224 1536 S---DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGV--AEYRMDDVVMEKLVEFDLLK----HAKKPSFTLSGGN 1606 (1833)
Q Consensus 1536 ~---~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~--~~~~~~~~~~~~l~~~~L~~----~~~~~~~~LSgG~ 1606 (1833)
. .....++.+||+||++.+++. |+.||+.+....++. +..+..+++.++++.+++.+ ..++++.+|||||
T Consensus 90 ~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq 168 (267)
T PRK14235 90 DPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQ 168 (267)
T ss_pred ccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHH
Confidence 3 234567789999999888874 999999876554443 23334566788999999953 4678899999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecC
Q 000224 1607 KRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS 1686 (1833)
Q Consensus 1607 kqrl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~ 1686 (1833)
|||++|||||+.+|++|||||||+|||+.+++.+.+.|++++ + + .|||++||++++++.+|||+++|++|++++.|+
T Consensus 169 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~-~-~-~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~ 245 (267)
T PRK14235 169 QQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELR-Q-N-YTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGD 245 (267)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHh-c-C-CeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999985 3 3 589999999999999999999999999999999
Q ss_pred hhHHHh
Q 000224 1687 PQHLKT 1692 (1833)
Q Consensus 1687 ~~~l~~ 1692 (1833)
++++..
T Consensus 246 ~~~~~~ 251 (267)
T PRK14235 246 TEKMFT 251 (267)
T ss_pred HHHHHh
Confidence 988754
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=388.71 Aligned_cols=206 Identities=29% Similarity=0.420 Sum_probs=186.8
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcc
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 637 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ 637 (1833)
..|+++||+++|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ ...++.
T Consensus 11 ~~l~i~~l~~~~~~----~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~----~~~~~~ 82 (257)
T PRK11247 11 TPLLLNAVSKRYGE----RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPL----AEARED 82 (257)
T ss_pred CcEEEEEEEEEECC----cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEH----HHhhCc
Confidence 46999999999953 4699999999999999999999999999999999999999999999998765 245678
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEE
Q 000224 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVI 717 (1833)
Q Consensus 638 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vli 717 (1833)
+||++|++.+++.+||+||+.+... + ..++++.++++.+||.+..++++.+||||||||++|||||+.+|+++|
T Consensus 83 i~~v~q~~~l~~~~tv~enl~~~~~--~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lll 156 (257)
T PRK11247 83 TRLMFQDARLLPWKKVIDNVGLGLK--G----QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLL 156 (257)
T ss_pred eEEEecCccCCCCCcHHHHHHhccc--c----hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999998999999987421 1 134678899999999988899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCH
Q 000224 718 LDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSS 777 (1833)
Q Consensus 718 LDEPtsgLD~~~r~~l~~~l~~~~--~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~ 777 (1833)
|||||+|||+.+++.++++|+++. .|+|||++||+++++..+||||++|++|++++.|+.
T Consensus 157 LDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 218 (257)
T PRK11247 157 LDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTV 218 (257)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeccc
Confidence 999999999999999999999973 489999999999999999999999999999987763
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=350.23 Aligned_cols=220 Identities=24% Similarity=0.418 Sum_probs=204.5
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc--------
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-------- 629 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-------- 629 (1833)
..++++||.|+|+ ...+|+++|++-++|+++.|+|.+||||||++++|.=+..|+.|.|.++|.++..
T Consensus 5 ~~l~v~dlHK~~G----~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l 80 (256)
T COG4598 5 NALEVEDLHKRYG----EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80 (256)
T ss_pred cceehhHHHhhcc----cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCe
Confidence 4699999999994 5579999999999999999999999999999999999999999999999988731
Q ss_pred ------cHHHhhcceEEEccCCCCCCCCCHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHH
Q 000224 630 ------DMDEIRKGLGVCPQYDILFPELTVREHLEM-FAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRK 702 (1833)
Q Consensus 630 ------~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~-~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqr 702 (1833)
....+|.++|+|+|+..||..|||.||+.- ....-|.++.+..++++.+|.++|+.++.+.++..|||||+||
T Consensus 81 ~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR 160 (256)
T COG4598 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQR 160 (256)
T ss_pred eeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHH
Confidence 235678899999999999999999999853 3455688999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 703 LSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 703 l~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
++|||||+.+|+++++|||||+|||+-.-++.+.++++. +|||++++||.|.+|..++.+++.+++|++-+.|+|+++.
T Consensus 161 ~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf 240 (256)
T COG4598 161 VAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVF 240 (256)
T ss_pred HHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHHh
Confidence 999999999999999999999999999999999999996 5999999999999999999999999999999999997763
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=389.03 Aligned_cols=219 Identities=26% Similarity=0.402 Sum_probs=192.6
Q ss_pred EEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhcc
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARR 1543 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~~~ 1543 (1833)
|+++|+++.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .....++
T Consensus 2 l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (256)
T TIGR03873 2 LRLSRVSWSAGG------RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR 75 (256)
T ss_pred ceEEeEEEEECC------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhh
Confidence 679999999953 469999999999999999999999999999999999999999999999998865 3345566
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHH-H---cCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcC
Q 000224 1544 LIGYCPQFDALLEYLTVQEHLELYAR-I---KGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1619 (1833)
Q Consensus 1544 ~ig~~pQ~~~l~~~lTv~e~l~~~~~-~---~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~ 1619 (1833)
.+||+||++.+++.+|++||+.+... . .+....+..+++.++++.+++.+..++++.+||||||||++||+||+.+
T Consensus 76 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (256)
T TIGR03873 76 RVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQE 155 (256)
T ss_pred heEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 79999999877788999999987421 1 1222223345678899999998889999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHH
Q 000224 1620 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1691 (1833)
Q Consensus 1620 p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~ 1691 (1833)
|+++||||||+|||+.+++.+++.|++++ ++| +|||++||+++++..+||||++|++|++++.|+++++.
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~-~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (256)
T TIGR03873 156 PKLLLLDEPTNHLDVRAQLETLALVRELA-ATG-VTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225 (256)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHH-hcC-CEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence 99999999999999999999999999986 344 58999999999999999999999999999999988764
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=386.87 Aligned_cols=215 Identities=30% Similarity=0.442 Sum_probs=191.8
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHHhhcc
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 637 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~ 637 (1833)
.++++|+++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .....|+.
T Consensus 3 ~l~~~~l~~~~~~----~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 78 (241)
T PRK14250 3 EIEFKEVSYSSFG----KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRK 78 (241)
T ss_pred eEEEEeEEEEeCC----eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhc
Confidence 4889999999953 359999999999999999999999999999999999999999999999998753 34456778
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-cccccccCCCChhHHHHHHHHHHHhCCCcEE
Q 000224 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA-DKVNIVVRALSGGMKRKLSLGIALIGDSKVV 716 (1833)
Q Consensus 638 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSgGqkqrl~lA~al~~~p~vl 716 (1833)
+||+||++.+++ .|++||+.+....++ ..++++.++++.+||. +..++.+.+||||||||++|||||+.+|++|
T Consensus 79 i~~~~q~~~~~~-~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 153 (241)
T PRK14250 79 IGMVFQQPHLFE-GTVKDNIEYGPMLKG----EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVL 153 (241)
T ss_pred EEEEecCchhch-hhHHHHHhcchhhcC----cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999998887 699999987544332 1235688899999997 5678999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 717 ILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 717 iLDEPtsgLD~~~r~~l~~~l~~~~--~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
||||||+|||+.+++.+++.|++++ .|+|||++||+++++..+||||++|++|+++..|++.++..
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (241)
T PRK14250 154 LLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221 (241)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhc
Confidence 9999999999999999999999985 38999999999999999999999999999999999877643
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=389.74 Aligned_cols=217 Identities=21% Similarity=0.327 Sum_probs=193.1
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHHhhcce
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGL 638 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~i 638 (1833)
++++|+++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .....++.+
T Consensus 2 l~~~~l~~~~~~----~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 77 (256)
T TIGR03873 2 LRLSRVSWSAGG----RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRV 77 (256)
T ss_pred ceEEeEEEEECC----EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhhe
Confidence 789999999953 469999999999999999999999999999999999999999999999998754 334556789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHH-h---cCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCc
Q 000224 639 GVCPQYDILFPELTVREHLEMFAV-L---KGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSK 714 (1833)
Q Consensus 639 g~~~Q~~~l~~~lTv~e~l~~~~~-~---~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~ 714 (1833)
||+||++.+++.+||+||+.++.. . .+....+..+++.++++.+++.+..++.+.+||||||||++|||||+.+|+
T Consensus 78 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (256)
T TIGR03873 78 ALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPK 157 (256)
T ss_pred EEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 999999887788999999987531 1 122223345678999999999988899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q 000224 715 VVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFL 780 (1833)
Q Consensus 715 vliLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~L 780 (1833)
++||||||+|||+.+++.++++|++++ +|+|||++||+++++..+||||++|++|+++..|++.++
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 158 LLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 999999999999999999999999986 489999999999999999999999999999999987665
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=377.97 Aligned_cols=212 Identities=22% Similarity=0.401 Sum_probs=185.4
Q ss_pred EEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccc
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1544 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~~~ 1544 (1833)
++++|++|.|+. .++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.... ..++.
T Consensus 1 ~~~~~l~~~~~~--------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~ 71 (213)
T TIGR01277 1 LALDKVRYEYEH--------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA-PYQRP 71 (213)
T ss_pred CeEEeeeEEeCC--------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC-hhccc
Confidence 368999999952 467999999999999999999999999999999999999999999999886422 35678
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000224 1545 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1624 (1833)
Q Consensus 1545 ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~vll 1624 (1833)
+||+||++.+++.+|++||+.+............++++.++++.+++.+..++++.+||||||||++||+||+.+|+++|
T Consensus 72 i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 151 (213)
T TIGR01277 72 VSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILL 151 (213)
T ss_pred eEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999889999999764332111122234567889999999888899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecC
Q 000224 1625 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS 1686 (1833)
Q Consensus 1625 LDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~ 1686 (1833)
|||||+|||+.+++.+++.|+++.++.+ +|||++||+++++..+|||+++|++|++++.|.
T Consensus 152 lDEPt~~LD~~~~~~~~~~l~~~~~~~~-~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 152 LDEPFSALDPLLREEMLALVKQLCSERQ-RTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999864434 689999999999999999999999999998874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=389.95 Aligned_cols=221 Identities=24% Similarity=0.414 Sum_probs=193.4
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceEEEEcCeeCCCC--
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT---DGTAFIFGKDIRSD-- 1537 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~---~G~i~i~G~~i~~~-- 1537 (1833)
++|+++||++.|++ +.+++++||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++...
T Consensus 3 ~~l~~~nl~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~ 76 (262)
T PRK09984 3 TIIRVEKLAKTFNQ------HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGR 76 (262)
T ss_pred cEEEEeeEEEEeCC------eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccc
Confidence 47999999999953 46999999999999999999999999999999999999987 49999999987531
Q ss_pred ----hHHhccceEEEecCCCCCCCCCHHHHHHHHHHH--------cCCChhhHHHHHHHHHHHcCCccccCCCCCCCChh
Q 000224 1538 ----PKAARRLIGYCPQFDALLEYLTVQEHLELYARI--------KGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGG 1605 (1833)
Q Consensus 1538 ----~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~--------~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG 1605 (1833)
....++++||+||++.+++.+|++||+.+.... .+....+.++++.++++.+++.+..++++.+||||
T Consensus 77 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G 156 (262)
T PRK09984 77 LARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGG 156 (262)
T ss_pred cchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHH
Confidence 234567899999999999999999999764320 01112334567888999999988889999999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEec
Q 000224 1606 NKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1685 (1833)
Q Consensus 1606 ~kqrl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g 1685 (1833)
|||||+|||||+.+|+||||||||+|||+.+++.+++.|+++++++| +|||++||+++++..+|||+++|++|++++.|
T Consensus 157 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g-~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g 235 (262)
T PRK09984 157 QQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDG-ITVVVTLHQVDYALRYCERIVALRQGHVFYDG 235 (262)
T ss_pred HHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999864444 68999999999999999999999999999999
Q ss_pred ChhHH
Q 000224 1686 SPQHL 1690 (1833)
Q Consensus 1686 ~~~~l 1690 (1833)
+++++
T Consensus 236 ~~~~~ 240 (262)
T PRK09984 236 SSQQF 240 (262)
T ss_pred CHHHh
Confidence 98775
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=389.79 Aligned_cols=218 Identities=26% Similarity=0.400 Sum_probs=193.7
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHHhhcc
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 637 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~ 637 (1833)
.++++|++++|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. +....++.
T Consensus 2 ~l~~~~l~~~~~~----~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (255)
T PRK11231 2 TLRTENLTVGYGT----KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARR 77 (255)
T ss_pred EEEEEeEEEEECC----EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhh
Confidence 4789999999953 469999999999999999999999999999999999999999999999988743 33455678
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHH----hcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCC
Q 000224 638 LGVCPQYDILFPELTVREHLEMFAV----LKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDS 713 (1833)
Q Consensus 638 ig~~~Q~~~l~~~lTv~e~l~~~~~----~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p 713 (1833)
+||+||++.+++.+|+.||+.++.. ..+......+++++++++.+||.+..++++++||||||||++|||||+.+|
T Consensus 78 i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 157 (255)
T PRK11231 78 LALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDT 157 (255)
T ss_pred eEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 9999999988888999999987421 122222344567889999999998889999999999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q 000224 714 KVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFL 780 (1833)
Q Consensus 714 ~vliLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~L 780 (1833)
++|||||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|+++..|++.++
T Consensus 158 ~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 158 PVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 9999999999999999999999999985 589999999999999999999999999999998887655
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=382.03 Aligned_cols=206 Identities=28% Similarity=0.456 Sum_probs=178.3
Q ss_pred EEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccceE
Q 000224 1467 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIG 1546 (1833)
Q Consensus 1467 v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~~~ig 1546 (1833)
++|++|+|++ +.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++. ..++++|
T Consensus 2 ~~~l~~~~~~------~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~----~~~~~i~ 71 (213)
T cd03235 2 VEDLTVSYGG------HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE----KERKRIG 71 (213)
T ss_pred cccceeEECC------EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH----HHHhheE
Confidence 6899999953 45999999999999999999999999999999999999999999999998764 3567899
Q ss_pred EEecCCCCC--CCCCHHHHHHHHHHHcC----CChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCC
Q 000224 1547 YCPQFDALL--EYLTVQEHLELYARIKG----VAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDP 1620 (1833)
Q Consensus 1547 ~~pQ~~~l~--~~lTv~e~l~~~~~~~g----~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p 1620 (1833)
|+||++.++ ..+|++||+.+.....+ ......++++.++++.+++.+..++++.+||||||||++||+||+.+|
T Consensus 72 ~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p 151 (213)
T cd03235 72 YVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDP 151 (213)
T ss_pred EeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 999998763 23799999987533211 122334566788999999988889999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEec
Q 000224 1621 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1685 (1833)
Q Consensus 1621 ~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g 1685 (1833)
++|||||||+|||+.+++.+++.|+++++ +| +|||++||++++++.+|||+++|++| +++.|
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 152 DLLLLDEPFAGVDPKTQEDIYELLRELRR-EG-MTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHh-cC-CEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999864 44 58999999999999999999999876 55543
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=386.25 Aligned_cols=218 Identities=29% Similarity=0.486 Sum_probs=194.3
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCC-----CcceEEEcCccCCc---c
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP-----TTGDALVFGKNITA---D 630 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~g~~i~~---~ 630 (1833)
.|+++||++.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.. +
T Consensus 3 ~l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 3 KISVKDLDLFYGD----FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred eEEEEEEEEEECC----ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 4889999999953 3599999999999999999999999999999999999863 79999999998753 3
Q ss_pred HHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHHH
Q 000224 631 MDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV-KEELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLSL 705 (1833)
Q Consensus 631 ~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~v~~~l~~~~L~----~~~~~~~~~LSgGqkqrl~l 705 (1833)
....|+.+||+||++.+++ +|++||+.+.....+. +.+..++++.++++.+++. +..++++.+||||||||++|
T Consensus 79 ~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 157 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCI 157 (250)
T ss_pred hHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHH
Confidence 3456788999999998887 8999999987655554 3345667888999999874 35688899999999999999
Q ss_pred HHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 706 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 706 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++|+++..|++.++.
T Consensus 158 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 158 ARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999977899999999999999999999999999999999987764
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=390.77 Aligned_cols=218 Identities=25% Similarity=0.378 Sum_probs=192.9
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCC-----CCcceEEEcCccCCc---
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP-----PTTGDALVFGKNITA--- 629 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~g~~i~~--- 629 (1833)
..|+++||++.|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 12 ~~l~i~nl~~~~~~----~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 12 IIISLQNVTISYGT----FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred ceEEEEeEEEEECC----EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 46999999999953 469999999999999999999999999999999999987 699999999998742
Q ss_pred cHHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHHH
Q 000224 630 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLSL 705 (1833)
Q Consensus 630 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~----~~~~~~~~~LSgGqkqrl~l 705 (1833)
+....|+.+||+||++.+++. ||+||+.+.....+... ..++++.++++.+++. +..++++.+||||||||++|
T Consensus 88 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~l 165 (269)
T PRK14259 88 DPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYTG-DMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCI 165 (269)
T ss_pred CHHHHhhceEEEccCCccchh-hHHHHHhhhhhhcCCcH-HHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHH
Confidence 344567889999999998884 99999998766555432 3456778889998874 45788999999999999999
Q ss_pred HHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeC-----------CEEEee
Q 000224 706 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMAN-----------GSLKCC 774 (1833)
Q Consensus 706 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~-----------G~l~~~ 774 (1833)
||||+.+|++|||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++ |++++.
T Consensus 166 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~ 245 (269)
T PRK14259 166 ARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEF 245 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEe
Confidence 999999999999999999999999999999999998789999999999999999999999996 678888
Q ss_pred cCHHHHH
Q 000224 775 GSSLFLK 781 (1833)
Q Consensus 775 G~~~~Lk 781 (1833)
|++.++.
T Consensus 246 ~~~~~~~ 252 (269)
T PRK14259 246 NETKKIF 252 (269)
T ss_pred CCHHHHH
Confidence 9887764
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=404.70 Aligned_cols=215 Identities=20% Similarity=0.333 Sum_probs=190.2
Q ss_pred eEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-----hHHhcc
Q 000224 1469 NLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-----PKAARR 1543 (1833)
Q Consensus 1469 ~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~-----~~~~~~ 1543 (1833)
||+|+|++ +. + |+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ....++
T Consensus 4 ~l~~~~~~------~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ 75 (354)
T TIGR02142 4 RFSKRLGD------FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75 (354)
T ss_pred EEEEEECC------EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhC
Confidence 89999953 23 4 89999999999999999999999999999999999999999999988532 123567
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEE
Q 000224 1544 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1623 (1833)
Q Consensus 1544 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~vl 1623 (1833)
++||+||++.+++.+||+||+.+..... ...+.++++.++++.++|.+..++++.+|||||||||+|||||+.+|++|
T Consensus 76 ~i~~v~q~~~l~~~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~ll 153 (354)
T TIGR02142 76 RIGYVFQEARLFPHLSVRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLL 153 (354)
T ss_pred CeEEEecCCccCCCCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 8999999999999999999998754322 22334456888999999998999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhhc
Q 000224 1624 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRF 1694 (1833)
Q Consensus 1624 lLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~~ 1694 (1833)
||||||+|||+.+++.+++.|++++++.| +|||++|||++++..+|||+++|++|++++.|+++++..+.
T Consensus 154 lLDEPts~LD~~~~~~l~~~L~~l~~~~g-~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 154 LMDEPLAALDDPRKYEILPYLERLHAEFG-IPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred EEcCCCcCCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 99999999999999999999999865434 68999999999999999999999999999999999987543
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=391.14 Aligned_cols=220 Identities=20% Similarity=0.330 Sum_probs=194.9
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHHhhc
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 636 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~ 636 (1833)
..|+++||+|+|++ +.+++|+||++.+||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. .....++
T Consensus 6 ~~l~i~~l~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (265)
T PRK10253 6 ARLRGEQLTLGYGK----YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81 (265)
T ss_pred cEEEEEEEEEEECC----EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhh
Confidence 47999999999953 469999999999999999999999999999999999999999999999998753 3345567
Q ss_pred ceEEEccCCCCCCCCCHHHHHHHHHH-hcC---CCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCC
Q 000224 637 GLGVCPQYDILFPELTVREHLEMFAV-LKG---VKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGD 712 (1833)
Q Consensus 637 ~ig~~~Q~~~l~~~lTv~e~l~~~~~-~~~---~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~ 712 (1833)
.+|||||++.+++.+|++||+.+... ..+ ...+..++++.++++.+||.+..++.+.+||||||||++|||||+.+
T Consensus 82 ~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~ 161 (265)
T PRK10253 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQE 161 (265)
T ss_pred heEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcC
Confidence 89999999999888999999986421 111 11233456788999999999888999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 713 SKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 713 p~vliLDEPtsgLD~~~r~~l~~~l~~~~--~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
|+++||||||+|||+.+++.++++|+++. .|+|||++||+++++..+||||++|++|+++..|++.++.
T Consensus 162 p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 162 TAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999985 3899999999999999999999999999999999887654
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=385.47 Aligned_cols=220 Identities=28% Similarity=0.448 Sum_probs=194.6
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCC---CCC--CcceEEEcCccCCc---
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGL---IPP--TTGDALVFGKNITA--- 629 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl---~~p--~~G~i~i~g~~i~~--- 629 (1833)
..++++|++|.|+. +.+++|+||++++||+++|+|+||||||||+++|+|+ .+| ++|+|.++|.++..
T Consensus 2 ~~l~~~~~~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 77 (250)
T PRK14245 2 VKIDARDVNFWYGD----FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGV 77 (250)
T ss_pred cEEEEEEEEEEECC----EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccc
Confidence 36899999999953 4699999999999999999999999999999999997 465 59999999998853
Q ss_pred cHHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCCc----ccccccCCCChhHHHHHH
Q 000224 630 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK-EELLESVVAEMVDEVGLAD----KVNIVVRALSGGMKRKLS 704 (1833)
Q Consensus 630 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~v~~~l~~~~L~~----~~~~~~~~LSgGqkqrl~ 704 (1833)
+....++.+||+||++.+++ .|+.||+.+....++.. .+..+++++++++.+|+.+ ..++++.+||||||||++
T Consensus 78 ~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 156 (250)
T PRK14245 78 QVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLC 156 (250)
T ss_pred cHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHH
Confidence 23456788999999998887 59999998876555543 3345677899999999853 468889999999999999
Q ss_pred HHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 705 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 705 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
|||||+.+|+++||||||+|||+.++++++++|+++++++|||++||+++++..+|||+++|++|+++..|++.++.+
T Consensus 157 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~ 234 (250)
T PRK14245 157 IARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFT 234 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999999999999999878999999999999999999999999999999999887753
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=404.59 Aligned_cols=211 Identities=25% Similarity=0.442 Sum_probs=189.7
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-----cHHHh
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-----DMDEI 634 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-----~~~~~ 634 (1833)
|++ ||+|+|++ +. + |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....
T Consensus 2 l~~-~l~k~~~~----~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 74 (352)
T PRK11144 2 LEL-NFKQQLGD----LC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPE 74 (352)
T ss_pred eEE-EEEEEeCC----EE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchh
Confidence 566 99999953 22 3 8999999999999999999999999999999999999999999988753 12345
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCc
Q 000224 635 RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSK 714 (1833)
Q Consensus 635 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~ 714 (1833)
++++|||||++.+|+.+||+||+.+... ...+++++++++.+||.+..++++++||||||||++|||||+.+|+
T Consensus 75 ~~~i~~v~q~~~l~~~~tv~enl~~~~~------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~ 148 (352)
T PRK11144 75 KRRIGYVFQDARLFPHYKVRGNLRYGMA------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPE 148 (352)
T ss_pred hCCEEEEcCCcccCCCCcHHHHHHhhhh------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 6789999999999999999999987532 1235678999999999998999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q 000224 715 VVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 783 (1833)
Q Consensus 715 vliLDEPtsgLD~~~r~~l~~~l~~~~-~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~ 783 (1833)
+|||||||+|||+.+++.+++.|+++. + |+|+|++|||++++..+||||++|++|+++..|++.++.+.
T Consensus 149 llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~ 219 (352)
T PRK11144 149 LLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWAS 219 (352)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhC
Confidence 999999999999999999999999985 3 89999999999999999999999999999999999888654
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=415.71 Aligned_cols=222 Identities=27% Similarity=0.454 Sum_probs=196.2
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHHhhc
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 636 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~ 636 (1833)
-.|+++||++.|+.++ +..+++|+||+|++||++||+||||+||||+.++|-.+|.|++|+|.+||+|+.. +....|+
T Consensus 464 G~IeF~~VsFaYP~Rp-~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~ 542 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTRP-DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRR 542 (716)
T ss_pred ceEEEEEeeeecCCCC-CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHH
Confidence 3699999999999875 6789999999999999999999999999999999999999999999999999974 7888999
Q ss_pred ceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHH-----HHHHHcCCCccccc----ccCCCChhHHHHHHHHH
Q 000224 637 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVA-----EMVDEVGLADKVNI----VVRALSGGMKRKLSLGI 707 (1833)
Q Consensus 637 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~-----~~l~~~~L~~~~~~----~~~~LSgGqkqrl~lA~ 707 (1833)
+||+|.|+|+||.. |++|||.++.. ..+.+++++.++ +.+. ++++..|+ +..+||||||||+||||
T Consensus 543 ~Ig~V~QEPvLFs~-sI~eNI~YG~~--~~t~e~i~~AAk~ANah~FI~--~~p~gY~T~VGEkG~qLSGGQKQRIAIAR 617 (716)
T KOG0058|consen 543 KIGLVGQEPVLFSG-SIRENIAYGLD--NATDEEIEAAAKMANAHEFIT--NFPDGYNTVVGEKGSQLSGGQKQRIAIAR 617 (716)
T ss_pred Heeeeeccceeecc-cHHHHHhcCCC--CCCHHHHHHHHHHhChHHHHH--hCccccccccCCccccccchHHHHHHHHH
Confidence 99999999999976 99999998754 344444433222 2222 44555544 44589999999999999
Q ss_pred HHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhCC
Q 000224 708 ALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGV 786 (1833)
Q Consensus 708 al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~~g~ 786 (1833)
||+.||+||||||.||+||.++...+.+.|.+..++||||+|.|++..++. ||+|++|++|++++.|+.++|.++.++
T Consensus 618 ALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~E~G~h~eLl~~~~g 695 (716)
T KOG0058|consen 618 ALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRH-ADQIVVIDKGRVVEMGTHDELLSKPNG 695 (716)
T ss_pred HHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhh-ccEEEEEcCCeEEecccHHHHhhCccc
Confidence 999999999999999999999999999999999999999999999999986 999999999999999999999887643
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=386.51 Aligned_cols=221 Identities=24% Similarity=0.395 Sum_probs=194.3
Q ss_pred cceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEEcCeeCCC
Q 000224 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY-----PTDGTAFIFGKDIRS 1536 (1833)
Q Consensus 1462 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~G~~i~~ 1536 (1833)
..+++++|++|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 11 ~~~l~~~~l~~~~~~------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~ 84 (260)
T PRK10744 11 PSKIQVRNLNFYYGK------FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILT 84 (260)
T ss_pred CceEEEEEEEEEeCC------eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccc
Confidence 357999999999953 459999999999999999999999999999999999986 589999999998853
Q ss_pred ---ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHc-CCChhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHH
Q 000224 1537 ---DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIK-GVAEYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKR 1608 (1833)
Q Consensus 1537 ---~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~-g~~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgG~kq 1608 (1833)
.....+++|||+||++.+++ .|++||+.+..... +.+.++..+++.++++.+++. +..++++.+|||||||
T Consensus 85 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 163 (260)
T PRK10744 85 PKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQ 163 (260)
T ss_pred cccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHH
Confidence 23456788999999988887 89999998765443 445445556788899999974 4578899999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChh
Q 000224 1609 KLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1688 (1833)
Q Consensus 1609 rl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~ 1688 (1833)
|++||+||+.+|++|||||||+|||+.+++.+++.|++++ + + +|||++||+++++..+|||+++|++|++++.|+++
T Consensus 164 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~-~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 164 RLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-Q-D-YTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999984 3 4 58999999999999999999999999999999998
Q ss_pred HHHh
Q 000224 1689 HLKT 1692 (1833)
Q Consensus 1689 ~l~~ 1692 (1833)
++.+
T Consensus 241 ~~~~ 244 (260)
T PRK10744 241 TIFT 244 (260)
T ss_pred HHHh
Confidence 8754
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=386.42 Aligned_cols=221 Identities=21% Similarity=0.400 Sum_probs=193.4
Q ss_pred cceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC--C---CceEEEEcCeeCCC
Q 000224 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY--P---TDGTAFIFGKDIRS 1536 (1833)
Q Consensus 1462 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~--p---~~G~i~i~G~~i~~ 1536 (1833)
+++|+++|++|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.++|+++..
T Consensus 10 ~~~l~i~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~ 83 (259)
T PRK14274 10 QEVYQINGMNLWYGQ------HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILK 83 (259)
T ss_pred CceEEEeeEEEEECC------eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccc
Confidence 468999999999953 459999999999999999999999999999999999987 3 69999999998853
Q ss_pred ---ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCC-ChhhHHHHHHHHHHHcCCcc----ccCCCCCCCChhHHH
Q 000224 1537 ---DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGV-AEYRMDDVVMEKLVEFDLLK----HAKKPSFTLSGGNKR 1608 (1833)
Q Consensus 1537 ---~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~-~~~~~~~~~~~~l~~~~L~~----~~~~~~~~LSgG~kq 1608 (1833)
.....++.+||+||++.+++. |++||+.+.....+. .+.+..+++.++++.+++.+ ..++++.+|||||||
T Consensus 84 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 84 GKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQ 162 (259)
T ss_pred cccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHH
Confidence 234567789999999988875 999999876555553 23344556778899998853 468899999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChh
Q 000224 1609 KLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1688 (1833)
Q Consensus 1609 rl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~ 1688 (1833)
|++||+||+.+|++|||||||+|||+.+++.+++.|++++ + + +|||++||+++++..+|||+++|++|++++.|+++
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~-~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 239 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK-E-K-YTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTN 239 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-c-C-CEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999985 3 4 58999999999999999999999999999999999
Q ss_pred HHHh
Q 000224 1689 HLKT 1692 (1833)
Q Consensus 1689 ~l~~ 1692 (1833)
++.+
T Consensus 240 ~~~~ 243 (259)
T PRK14274 240 KMFS 243 (259)
T ss_pred HHhh
Confidence 8764
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=404.85 Aligned_cols=214 Identities=22% Similarity=0.420 Sum_probs=191.2
Q ss_pred eeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCcc-----HHHhhcce
Q 000224 564 KLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD-----MDEIRKGL 638 (1833)
Q Consensus 564 ~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~-----~~~~r~~i 638 (1833)
||+|+|++ +. + |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....++.+
T Consensus 4 ~l~~~~~~----~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i 77 (354)
T TIGR02142 4 RFSKRLGD----FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRI 77 (354)
T ss_pred EEEEEECC----EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCe
Confidence 89999953 23 4 99999999999999999999999999999999999999999999987531 23456789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEE
Q 000224 639 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVIL 718 (1833)
Q Consensus 639 g~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliL 718 (1833)
||+||++.+|+.+||+||+.+..... ...+.+++++++++.+||.+..++++++|||||||||+|||||+.+|++|||
T Consensus 78 ~~v~q~~~l~~~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllL 155 (354)
T TIGR02142 78 GYVFQEARLFPHLSVRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLM 155 (354)
T ss_pred EEEecCCccCCCCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999998865422 2334556789999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhC
Q 000224 719 DEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 785 (1833)
Q Consensus 719 DEPtsgLD~~~r~~l~~~l~~~~-~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~~g 785 (1833)
||||+|||+.+++.+++.|++++ + |+|||++||+++++..+||||++|++|++++.|++.++.....
T Consensus 156 DEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 224 (354)
T TIGR02142 156 DEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPD 224 (354)
T ss_pred cCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcC
Confidence 99999999999999999999985 3 8999999999999999999999999999999999988865443
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=385.33 Aligned_cols=220 Identities=30% Similarity=0.460 Sum_probs=194.1
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCC--CC---CcceEEEcCccCCc---
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLI--PP---TTGDALVFGKNITA--- 629 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~--~p---~~G~i~i~g~~i~~--- 629 (1833)
..++++||++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+. +| ++|+|.++|.++..
T Consensus 4 ~~l~~~~l~~~~~~----~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~ 79 (252)
T PRK14239 4 PILQVSDLSVYYNK----KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT 79 (252)
T ss_pred ceEEEEeeEEEECC----eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCccc
Confidence 36899999999953 36999999999999999999999999999999999995 46 59999999998742
Q ss_pred cHHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHH
Q 000224 630 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK-EELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLS 704 (1833)
Q Consensus 630 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~v~~~l~~~~L~----~~~~~~~~~LSgGqkqrl~ 704 (1833)
+....|+.+||+||++.+++ +|++||+.+.....+.. .+..++++.++++.+++. +..++.+++||||||||++
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 158 (252)
T PRK14239 80 DTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVC 158 (252)
T ss_pred chHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHH
Confidence 23345778999999998887 79999999876555543 334567788899999874 3568899999999999999
Q ss_pred HHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 705 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 705 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
|||||+.+|++|||||||+|||+.+++.++++|+++++++|||++||+++++..+||||++|++|++++.|++.++.+
T Consensus 159 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 236 (252)
T PRK14239 159 IARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFM 236 (252)
T ss_pred HHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999999998777999999999999999999999999999999999877643
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=380.02 Aligned_cols=208 Identities=33% Similarity=0.569 Sum_probs=188.6
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcceE
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 639 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 639 (1833)
++++|++|.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... .++.+|
T Consensus 1 l~l~~v~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~---~~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGK----QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK---DLHKIG 73 (223)
T ss_pred CEEEeEEEEECC----EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc---ccccEE
Confidence 468999999953 4699999999999999999999999999999999999999999999999876421 135799
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEEe
Q 000224 640 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 719 (1833)
Q Consensus 640 ~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 719 (1833)
|+||++.+++.+|++||+.++....+.+ ++++.++++.+|+.+..++.+.+||||||||++||||++.+|+++|||
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllD 149 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILD 149 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHHcCCC----HHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 9999999999999999998876655533 346788999999998899999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHH
Q 000224 720 EPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSL 778 (1833)
Q Consensus 720 EPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~ 778 (1833)
|||+|||+.+++.++++|++++ +|+|||++||+++++..+||||++|++|++.+.|++.
T Consensus 150 EP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 150 EPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChh
Confidence 9999999999999999999986 5899999999999999999999999999999988763
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=382.22 Aligned_cols=216 Identities=23% Similarity=0.394 Sum_probs=189.9
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcceE
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 639 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 639 (1833)
++++||++.|+. + ..|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ..++.+|
T Consensus 2 l~~~~l~~~~~~----~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHH----L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTP-PSRRPVS 74 (232)
T ss_pred eEEEEEEEEECC----c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCC-hhhccEE
Confidence 789999999953 1 23899999999999999999999999999999999999999999999875321 2356799
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEEe
Q 000224 640 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 719 (1833)
Q Consensus 640 ~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 719 (1833)
|+||++.+++.+|+.||+.+.........+..++++.++++.+||.+..++++++||||||||++||||++.+|+++|||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 154 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLD 154 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999999986532111112334667899999999998899999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 720 EPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 720 EPtsgLD~~~r~~l~~~l~~~~-~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
|||+|||+.+++.++++|+++. + |+|||++||+++++..+|||+++|++|++.+.|++.++.+
T Consensus 155 EP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 155 EPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999984 3 8999999999999999999999999999999999877653
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=384.53 Aligned_cols=219 Identities=28% Similarity=0.473 Sum_probs=194.9
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCC-----CcceEEEcCccCCc---c
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP-----TTGDALVFGKNITA---D 630 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~g~~i~~---~ 630 (1833)
.|+++||++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .
T Consensus 3 ~l~~~~l~~~~~~----~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~ 78 (250)
T PRK14262 3 IIEIENFSAYYGE----KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLD 78 (250)
T ss_pred eEEEEeeEEEeCC----ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhh
Confidence 5899999999953 4699999999999999999999999999999999999984 89999999998753 2
Q ss_pred HHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCCc----ccccccCCCChhHHHHHHH
Q 000224 631 MDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK-EELLESVVAEMVDEVGLAD----KVNIVVRALSGGMKRKLSL 705 (1833)
Q Consensus 631 ~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~v~~~l~~~~L~~----~~~~~~~~LSgGqkqrl~l 705 (1833)
....++.+||+||++.+++ .|++||+.+.....+.. .+..+++++++++.+|+.+ ..++.+.+||||||||++|
T Consensus 79 ~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~l 157 (250)
T PRK14262 79 VTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCI 157 (250)
T ss_pred HHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHH
Confidence 2345778999999999887 89999998876554433 3345667889999999863 4688999999999999999
Q ss_pred HHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 706 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 706 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
||||+.+|++|||||||+|||+.++++++++|+++++++|||++||+++++..+|||+++|++|+++..|++.++.+
T Consensus 158 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14262 158 ARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVE 234 (250)
T ss_pred HHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999999999999999878999999999999999999999999999999999887754
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=376.63 Aligned_cols=205 Identities=30% Similarity=0.431 Sum_probs=180.6
Q ss_pred eEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-----ChHHhcc
Q 000224 1469 NLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-----DPKAARR 1543 (1833)
Q Consensus 1469 ~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-----~~~~~~~ 1543 (1833)
||+|+|++ +.+ |+||+|++ |++||+||||||||||+++|+|+++|++|+|.++|.++.. .....++
T Consensus 5 ~l~~~~~~------~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 5 DIEKRLPD------FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred eeeEecCC------eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 89999963 333 99999999 9999999999999999999999999999999999998753 1223567
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEE
Q 000224 1544 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1623 (1833)
Q Consensus 1544 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~vl 1623 (1833)
.+||+||++.+++.+|++||+.+..... .....++++.++++.+++.+..++++.+||||||||++||+||+.+|++|
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 153 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELL 153 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 8999999999998899999998764322 22234456788999999988889999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEec
Q 000224 1624 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1685 (1833)
Q Consensus 1624 lLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g 1685 (1833)
||||||+|||+.+++.+++.|++++++.| +|||++||++++++.+|||+++|++|++++.|
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 154 LLDEPFSALDRALRLQLLPELKQIKKNLN-IPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcC-cEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999865434 58999999999999999999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-40 Score=383.31 Aligned_cols=221 Identities=24% Similarity=0.396 Sum_probs=193.1
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC--C---CceEEEEcCeeCCC-
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY--P---TDGTAFIFGKDIRS- 1536 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~--p---~~G~i~i~G~~i~~- 1536 (1833)
..|+++|++|+|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.++|+++..
T Consensus 3 ~~l~~~nl~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~ 76 (252)
T PRK14256 3 NKVKLEQLNVHFGK------NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDR 76 (252)
T ss_pred cEEEEEEEEEEeCC------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccc
Confidence 36899999999952 459999999999999999999999999999999999986 4 69999999998853
Q ss_pred --ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCC-ChhhHHHHHHHHHHHcCCcc----ccCCCCCCCChhHHHH
Q 000224 1537 --DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGV-AEYRMDDVVMEKLVEFDLLK----HAKKPSFTLSGGNKRK 1609 (1833)
Q Consensus 1537 --~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~-~~~~~~~~~~~~l~~~~L~~----~~~~~~~~LSgG~kqr 1609 (1833)
.....++.+||+||++.+++.+|++||+.+.....+. ...+.++++.++++.+++.. ..++.+.+||||||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14256 77 GVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQR 156 (252)
T ss_pred cCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHH
Confidence 2335677899999999999989999999875544442 23344566788899999853 4678899999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhH
Q 000224 1610 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1689 (1833)
Q Consensus 1610 l~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~ 1689 (1833)
++||+||+.+|++|||||||+|||+.+++.+++.|++++ + + +|||++||+++++..+|||+++|++|++++.|++++
T Consensus 157 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~-~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14256 157 LCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELK-E-K-YTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKK 233 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-h-C-CcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999995 3 3 589999999999999999999999999999999988
Q ss_pred HHh
Q 000224 1690 LKT 1692 (1833)
Q Consensus 1690 l~~ 1692 (1833)
+..
T Consensus 234 ~~~ 236 (252)
T PRK14256 234 IFT 236 (252)
T ss_pred HHh
Confidence 764
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=376.92 Aligned_cols=210 Identities=26% Similarity=0.449 Sum_probs=186.0
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcceE
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 639 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 639 (1833)
++++||++.|+. .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.+|
T Consensus 1 ~~~~~l~~~~~~------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGL-APYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccC-ChhccceE
Confidence 368999999941 46899999999999999999999999999999999999999999999987532 23567899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEEe
Q 000224 640 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 719 (1833)
Q Consensus 640 ~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 719 (1833)
|+||++.+++.+|+.||+.+............+++++++++.+||.+..++.+++||||||||++|||||+.+|+++|||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 153 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLD 153 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999999986543211112234567889999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecC
Q 000224 720 EPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776 (1833)
Q Consensus 720 EPtsgLD~~~r~~l~~~l~~~~-~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~ 776 (1833)
|||+|||+.+++.++++|++++ + |+|||++||+++++..+|||+++|++|++++.|.
T Consensus 154 EPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 154 EPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999985 3 8999999999999999999999999999998764
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-40 Score=387.37 Aligned_cols=220 Identities=26% Similarity=0.429 Sum_probs=193.3
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCC-----CCcceEEEcCccCCc---
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP-----PTTGDALVFGKNITA--- 629 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~g~~i~~--- 629 (1833)
..++++|+++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|.++..
T Consensus 20 ~~l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 95 (268)
T PRK14248 20 HILEVKDLSIYYGE----KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNI 95 (268)
T ss_pred ceEEEEEEEEEeCC----ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccc
Confidence 46999999999953 469999999999999999999999999999999999864 799999999998853
Q ss_pred cHHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHH
Q 000224 630 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK-EELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLS 704 (1833)
Q Consensus 630 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~v~~~l~~~~L~----~~~~~~~~~LSgGqkqrl~ 704 (1833)
+....++++||+||++.+++. |++||+.+.....+.. ....++.+.++++.+++. +..++++++||||||||++
T Consensus 96 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~ 174 (268)
T PRK14248 96 NVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLC 174 (268)
T ss_pred cHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHH
Confidence 233467789999999998885 9999998765443332 233456788899999884 4468899999999999999
Q ss_pred HHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 705 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 705 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
|||||+.+|++|||||||+|||+.+++.++++|+++++++|||++||+++++..+||||++|++|+++..|++.++.+
T Consensus 175 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 252 (268)
T PRK14248 175 IARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFT 252 (268)
T ss_pred HHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999999999778999999999999999999999999999999999877643
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=388.52 Aligned_cols=219 Identities=27% Similarity=0.400 Sum_probs=193.5
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCC---cceEEEcCccCCc-----
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPT---TGDALVFGKNITA----- 629 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~---~G~i~i~g~~i~~----- 629 (1833)
..|+++||++.|++ +.+++|+||++.+||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++..
T Consensus 3 ~~l~~~nl~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~ 78 (262)
T PRK09984 3 TIIRVEKLAKTFNQ----HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLA 78 (262)
T ss_pred cEEEEeeEEEEeCC----eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccc
Confidence 36899999999953 46999999999999999999999999999999999999987 4999999998743
Q ss_pred -cHHHhhcceEEEccCCCCCCCCCHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHH
Q 000224 630 -DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVL--------KGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMK 700 (1833)
Q Consensus 630 -~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~--------~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqk 700 (1833)
.....++.+||+||++.+++.+|+.||+.+.... .+...++.+++++++++.+|+.+..++.+.+||||||
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 158 (262)
T PRK09984 79 RDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQ 158 (262)
T ss_pred hhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHH
Confidence 2244577899999999999999999999875321 1111234466889999999999888999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHH
Q 000224 701 RKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSL 778 (1833)
Q Consensus 701 qrl~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~--~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~ 778 (1833)
||++|||||+.+|++|||||||+|||+.+++.++++|++++ +|+|||++||+++++..+||||++|++|++.+.|++.
T Consensus 159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~ 238 (262)
T PRK09984 159 QRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQ 238 (262)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999985 3899999999999999999999999999999999876
Q ss_pred HH
Q 000224 779 FL 780 (1833)
Q Consensus 779 ~L 780 (1833)
++
T Consensus 239 ~~ 240 (262)
T PRK09984 239 QF 240 (262)
T ss_pred Hh
Confidence 54
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=377.98 Aligned_cols=232 Identities=24% Similarity=0.395 Sum_probs=201.8
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-C----CceEEEEcCeeCCCC-
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY-P----TDGTAFIFGKDIRSD- 1537 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~-p----~~G~i~i~G~~i~~~- 1537 (1833)
+|+++||+..|.... +...||+||||+|++||++||+|.+|||||||.+.|+|+++ | .+|+|.++|+++.+-
T Consensus 1 lL~v~nL~v~f~~~~--g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~ 78 (316)
T COG0444 1 LLEVKNLSVSFPTDA--GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLS 78 (316)
T ss_pred CceEeeeEEEEecCC--ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCC
Confidence 378999999997532 34679999999999999999999999999999999999998 4 579999999988653
Q ss_pred hH---Hh-ccceEEEecCC--CCCCCCCHHHHHHHHHHHcC-C-ChhhHHHHHHHHHHHcCCcc---ccCCCCCCCChhH
Q 000224 1538 PK---AA-RRLIGYCPQFD--ALLEYLTVQEHLELYARIKG-V-AEYRMDDVVMEKLVEFDLLK---HAKKPSFTLSGGN 1606 (1833)
Q Consensus 1538 ~~---~~-~~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~~g-~-~~~~~~~~~~~~l~~~~L~~---~~~~~~~~LSgG~ 1606 (1833)
.+ ++ .+.|+|+||++ +|.|-+|+.+.+.-..+.++ . .+++..+++.++|+.+|+.+ ..+.++.+|||||
T Consensus 79 ~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGM 158 (316)
T COG0444 79 EKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGM 158 (316)
T ss_pred HHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcH
Confidence 22 22 35799999995 78899999998876666443 3 45667788999999999974 5789999999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecC
Q 000224 1607 KRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS 1686 (1833)
Q Consensus 1607 kqrl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~ 1686 (1833)
||||.||+||+.+|++||.||||++||...+.++.++|++++++.| +|+|++|||+..+..+||||+||..|++++.|+
T Consensus 159 rQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~-~aiilITHDl~vva~~aDri~VMYaG~iVE~g~ 237 (316)
T COG0444 159 RQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKG-TALILITHDLGVVAEIADRVAVMYAGRIVEEGP 237 (316)
T ss_pred HHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhcceEEEEECcEEEEeCC
Confidence 9999999999999999999999999999999999999999986554 799999999999999999999999999999999
Q ss_pred hhHHHhhcCCeE
Q 000224 1687 PQHLKTRFGNFL 1698 (1833)
Q Consensus 1687 ~~~l~~~~~~~~ 1698 (1833)
.+++...-..-|
T Consensus 238 ~~~i~~~P~HPY 249 (316)
T COG0444 238 VEEIFKNPKHPY 249 (316)
T ss_pred HHHHhcCCCChH
Confidence 999876544333
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=384.92 Aligned_cols=220 Identities=25% Similarity=0.451 Sum_probs=193.6
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEEcCeeCCC--
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP-----TDGTAFIFGKDIRS-- 1536 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~G~~i~~-- 1536 (1833)
+++++|++|+|++ +.+|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++..
T Consensus 4 ~l~i~~v~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~ 77 (258)
T PRK14241 4 RIDVKDLNIYYGS------FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPG 77 (258)
T ss_pred cEEEeeEEEEECC------EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccc
Confidence 6899999999963 4599999999999999999999999999999999999974 79999999998742
Q ss_pred -ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCC-ChhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHHHH
Q 000224 1537 -DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGV-AEYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKRKL 1610 (1833)
Q Consensus 1537 -~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~-~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgG~kqrl 1610 (1833)
.....++.+||++|++.+++.+|++||+.+....++. +....++.+.++++.+++. +..++++.+|||||||||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 157 (258)
T PRK14241 78 VDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRL 157 (258)
T ss_pred cChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHH
Confidence 2345677899999999999989999999876655443 3344556778889999884 467889999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEE------CCEEEEe
Q 000224 1611 SVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMV------GGQLRCI 1684 (1833)
Q Consensus 1611 ~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~------~G~i~~~ 1684 (1833)
+|||||+.+|++|||||||+|||+.+++.+++.|++++ + + +|||++||+++++..+|||+++|+ +|++++.
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~-~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 158 CIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK-Q-D-YTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-C-CEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 99999999999999999999999999999999999984 3 3 589999999999999999999997 7999999
Q ss_pred cChhHHHh
Q 000224 1685 GSPQHLKT 1692 (1833)
Q Consensus 1685 g~~~~l~~ 1692 (1833)
|+++++.+
T Consensus 235 ~~~~~~~~ 242 (258)
T PRK14241 235 DDTEKIFS 242 (258)
T ss_pred CCHHHHHh
Confidence 99988754
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-40 Score=384.24 Aligned_cols=223 Identities=22% Similarity=0.365 Sum_probs=192.0
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCee-----CCCC
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKD-----IRSD 1537 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~-----i~~~ 1537 (1833)
.+|+++|+++.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.+ +...
T Consensus 5 ~~l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~ 78 (258)
T PRK11701 5 PLLSVRGLTKLYGP------RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYAL 78 (258)
T ss_pred ceEEEeeeEEEcCC------ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccC
Confidence 47999999999953 459999999999999999999999999999999999999999999999998 6432
Q ss_pred -hHH----hccceEEEecCC--CCCCCCCHHHHHHHHHHHcCC-ChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHH
Q 000224 1538 -PKA----ARRLIGYCPQFD--ALLEYLTVQEHLELYARIKGV-AEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKR 1608 (1833)
Q Consensus 1538 -~~~----~~~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~~g~-~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~kq 1608 (1833)
... .++.+||+||++ .+++.+|+.||+.+.....+. ...+.++.+.++++.+++. +..++++.+|||||||
T Consensus 79 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~q 158 (258)
T PRK11701 79 SEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQ 158 (258)
T ss_pred CHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHH
Confidence 222 356799999996 466778999998754322221 2233456678899999997 4788999999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChh
Q 000224 1609 KLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1688 (1833)
Q Consensus 1609 rl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~ 1688 (1833)
|++|||||+.+|++|||||||+|||+.+++.+++.|++++++.| .|||++||+++++..+|||+++|++|++++.|+++
T Consensus 159 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 237 (258)
T PRK11701 159 RLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELG-LAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTD 237 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC-cEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999865434 68999999999999999999999999999999998
Q ss_pred HHHh
Q 000224 1689 HLKT 1692 (1833)
Q Consensus 1689 ~l~~ 1692 (1833)
++.+
T Consensus 238 ~~~~ 241 (258)
T PRK11701 238 QVLD 241 (258)
T ss_pred HHhc
Confidence 8754
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=384.27 Aligned_cols=219 Identities=30% Similarity=0.461 Sum_probs=194.3
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCC-----CCcceEEEcCccCCc---c
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP-----PTTGDALVFGKNITA---D 630 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~g~~i~~---~ 630 (1833)
.|+++|+++.|+. +.+++|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .
T Consensus 4 ~l~~~~l~~~~~~----~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~ 79 (251)
T PRK14251 4 IISAKDVHLSYGN----YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79 (251)
T ss_pred eEEEEeeEEEECC----eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccch
Confidence 5899999999953 469999999999999999999999999999999999997 489999999998742 2
Q ss_pred HHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHHH
Q 000224 631 MDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK-EELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLSL 705 (1833)
Q Consensus 631 ~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~v~~~l~~~~L~----~~~~~~~~~LSgGqkqrl~l 705 (1833)
....++.+||++|++.+++ .||+||+.+.....+.. .+..++++.++++.+++. +..++.+.+||||||||++|
T Consensus 80 ~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~l 158 (251)
T PRK14251 80 LVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICI 158 (251)
T ss_pred HHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHH
Confidence 3456788999999998886 79999998765554443 334567788999999984 45688999999999999999
Q ss_pred HHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 706 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 706 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
||||+.+|+++||||||+|||+.+++.+++.|+++++++|||++||+++++..+||||++|++|++++.|++.++..
T Consensus 159 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 235 (251)
T PRK14251 159 ARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFI 235 (251)
T ss_pred HHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999778999999999999999999999999999999999877643
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-40 Score=382.89 Aligned_cols=221 Identities=22% Similarity=0.396 Sum_probs=193.5
Q ss_pred cceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEEcCeeCCC
Q 000224 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP-----TDGTAFIFGKDIRS 1536 (1833)
Q Consensus 1462 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~G~~i~~ 1536 (1833)
+++++++|+++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+.+| ++|+|.++|.++..
T Consensus 2 ~~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~ 75 (251)
T PRK14270 2 KIKMESKNLNLWYGE------KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYD 75 (251)
T ss_pred ccEEEEEEeEEEECC------eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccc
Confidence 357999999999952 4599999999999999999999999999999999999875 89999999999853
Q ss_pred ---ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCC-hhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHH
Q 000224 1537 ---DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVA-EYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKR 1608 (1833)
Q Consensus 1537 ---~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~-~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgG~kq 1608 (1833)
.....++.+||+||++.+++ +|++||+.+.....+.. ..+..+++.++++.+++. +..++++.+|||||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 154 (251)
T PRK14270 76 KDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQ 154 (251)
T ss_pred ccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHH
Confidence 22345778999999998887 89999998766555542 334455677889999874 4578899999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChh
Q 000224 1609 KLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1688 (1833)
Q Consensus 1609 rl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~ 1688 (1833)
|++||+||+.+|++|||||||+|||+.+++.+++.|++++ + + .|||++||+++++..+|||+++|++|++++.|+++
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~-~-~-~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 231 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELK-K-E-YTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTE 231 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-h-C-CeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHH
Confidence 9999999999999999999999999999999999999985 3 3 58999999999999999999999999999999998
Q ss_pred HHHh
Q 000224 1689 HLKT 1692 (1833)
Q Consensus 1689 ~l~~ 1692 (1833)
++..
T Consensus 232 ~~~~ 235 (251)
T PRK14270 232 KIFL 235 (251)
T ss_pred HHhc
Confidence 8753
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-40 Score=386.73 Aligned_cols=220 Identities=25% Similarity=0.434 Sum_probs=191.1
Q ss_pred cceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEEcCeeCCC
Q 000224 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY-----PTDGTAFIFGKDIRS 1536 (1833)
Q Consensus 1462 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~G~~i~~ 1536 (1833)
..+|+++|++++|++ +.+++|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 11 ~~~l~i~nl~~~~~~------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~ 84 (269)
T PRK14259 11 NIIISLQNVTISYGT------FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYD 84 (269)
T ss_pred CceEEEEeEEEEECC------EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 357999999999953 469999999999999999999999999999999999987 699999999998742
Q ss_pred ---ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHHH
Q 000224 1537 ---DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKRK 1609 (1833)
Q Consensus 1537 ---~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgG~kqr 1609 (1833)
+....++++||+||++.+++ .|++||+.+.....+... ..++.+.++++.+++. +..++++.+||||||||
T Consensus 85 ~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 162 (269)
T PRK14259 85 PRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARINGYTG-DMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQR 162 (269)
T ss_pred ccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcCCcH-HHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHH
Confidence 34456778999999998887 599999988765555432 2345567788888763 45788999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEEC-----------
Q 000224 1610 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVG----------- 1678 (1833)
Q Consensus 1610 l~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~----------- 1678 (1833)
|+|||||+.+|++|||||||+|||+.+++.++++|++++ + + .|||++||++++++.+|||+++|++
T Consensus 163 l~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~-~-~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~ 239 (269)
T PRK14259 163 LCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK-K-N-FTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKV 239 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-C-CEEEEEeCCHHHHHHhcCEEEEEecccccccccccc
Confidence 999999999999999999999999999999999999984 3 4 5899999999999999999999996
Q ss_pred CEEEEecChhHHHh
Q 000224 1679 GQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1679 G~i~~~g~~~~l~~ 1692 (1833)
|++++.|+++++.+
T Consensus 240 g~~~~~~~~~~~~~ 253 (269)
T PRK14259 240 GYLVEFNETKKIFN 253 (269)
T ss_pred ceEEEeCCHHHHHh
Confidence 67899999888754
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-40 Score=381.87 Aligned_cols=219 Identities=25% Similarity=0.432 Sum_probs=192.4
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC---CCceEEEEcCeeCCC-ChH
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY---PTDGTAFIFGKDIRS-DPK 1539 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~---p~~G~i~i~G~~i~~-~~~ 1539 (1833)
+++++|+++.|++ +.+++|+||++++||++||+||||||||||+++|+|+++ |++|+|.++|+++.. ...
T Consensus 2 ~~~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~ 75 (246)
T PRK14269 2 IAKTTNLNLFYGK------KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVV 75 (246)
T ss_pred ceeeeeeEEEECC------EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHH
Confidence 4789999999963 469999999999999999999999999999999999974 799999999999865 334
Q ss_pred HhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCC--hhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHHHHHHH
Q 000224 1540 AARRLIGYCPQFDALLEYLTVQEHLELYARIKGVA--EYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKRKLSVA 1613 (1833)
Q Consensus 1540 ~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~--~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgG~kqrl~lA 1613 (1833)
..++.|||+||++.+++ .|++||+.+....++.. ....++++.++++.+++. +..++++.+||||||||++||
T Consensus 76 ~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 154 (246)
T PRK14269 76 ALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIA 154 (246)
T ss_pred HHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHH
Confidence 56778999999998887 69999998866554432 233445677889999995 346888999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1614 IAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1614 ~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
|||+.+|++|||||||+|||+.+++.+.+.|+++. + + +|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 155 ral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~-~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 155 RALAIKPKLLLLDEPTSALDPISSGVIEELLKELS-H-N-LSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-C-C-CEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999984 3 4 589999999999999999999999999999999988764
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=377.58 Aligned_cols=210 Identities=35% Similarity=0.539 Sum_probs=188.0
Q ss_pred EEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccc
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1544 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~~~ 1544 (1833)
++++|++|.|++ +.+++++||++++||++||+||||||||||+++|+|+++|++|+|.++|.++... .++.
T Consensus 1 l~l~~v~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~---~~~~ 71 (223)
T TIGR03740 1 LETKNLSKRFGK------QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK---DLHK 71 (223)
T ss_pred CEEEeEEEEECC------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc---cccc
Confidence 468999999952 4699999999999999999999999999999999999999999999999987532 1357
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000224 1545 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1624 (1833)
Q Consensus 1545 ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~vll 1624 (1833)
+||+||++.+++.+|++||+.++....+.+ ++.+.++++.+++.+..++++.+||||||||++||+|++.+|++|+
T Consensus 72 ~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~lll 147 (223)
T TIGR03740 72 IGSLIESPPLYENLTARENLKVHTTLLGLP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLI 147 (223)
T ss_pred EEEEcCCCCccccCCHHHHHHHHHHHcCCC----HHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999998888899999998876655433 2456788999999988999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhH
Q 000224 1625 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1689 (1833)
Q Consensus 1625 LDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~ 1689 (1833)
|||||+|||+.+++.+++.|+++++ +| .|||++||+++++..+|||+++|++|++++.|++.+
T Consensus 148 lDEP~~~LD~~~~~~l~~~L~~~~~-~~-~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 148 LDEPTNGLDPIGIQELRELIRSFPE-QG-ITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred ECCCccCCCHHHHHHHHHHHHHHHH-CC-CEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999999863 44 589999999999999999999999999999998653
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=376.09 Aligned_cols=203 Identities=31% Similarity=0.467 Sum_probs=181.6
Q ss_pred eeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-----cHHHhhcce
Q 000224 564 KLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-----DMDEIRKGL 638 (1833)
Q Consensus 564 ~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-----~~~~~r~~i 638 (1833)
||+|+|++ +.+ |+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.. +....++.+
T Consensus 5 ~l~~~~~~----~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 77 (214)
T cd03297 5 DIEKRLPD----FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKI 77 (214)
T ss_pred eeeEecCC----eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcE
Confidence 89999954 234 99999999 9999999999999999999999999999999999988742 223457789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEE
Q 000224 639 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVIL 718 (1833)
Q Consensus 639 g~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliL 718 (1833)
||+||++.+++.+|+.||+.+..... .....++++.++++.+|+.+..++++.+||||||||++||+||+.+|+++||
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 155 (214)
T cd03297 78 GLVFQQYALFPHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLL 155 (214)
T ss_pred EEEecCCccCCCCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999998765322 3334566789999999999888999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeec
Q 000224 719 DEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 775 (1833)
Q Consensus 719 DEPtsgLD~~~r~~l~~~l~~~~-~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G 775 (1833)
||||+|||+.+++.++++|++++ + |+|||++||++++++.+|||+++|++|++++.|
T Consensus 156 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 156 DEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999985 3 899999999999999999999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=385.16 Aligned_cols=220 Identities=26% Similarity=0.393 Sum_probs=195.9
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCC-----CCcceEEEcCccCCc---
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP-----PTTGDALVFGKNITA--- 629 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~g~~i~~--- 629 (1833)
..|+++||++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 19 ~~l~~~nl~~~~~~----~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 19 IALSTKDLHVYYGK----KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred eEEEEeeEEEEECC----eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 47999999999943 469999999999999999999999999999999999996 589999999998842
Q ss_pred cHHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHH
Q 000224 630 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV-KEELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLS 704 (1833)
Q Consensus 630 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~v~~~l~~~~L~----~~~~~~~~~LSgGqkqrl~ 704 (1833)
+....++.+||+||++.+++ .||+||+.+.....+. .++..++++.++++.++|. +..++++++||||||||++
T Consensus 95 ~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~ 173 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLC 173 (267)
T ss_pred ChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHH
Confidence 23456788999999998887 5999999886554443 3445667888999999985 3568899999999999999
Q ss_pred HHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 705 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 705 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
|||||+.+|++|||||||+|||+.+++++.++|+++++++|||++||+++++..+|||+++|++|++++.|++.++..
T Consensus 174 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 251 (267)
T PRK14237 174 IARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFT 251 (267)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999999878999999999999999999999999999999999877643
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=382.35 Aligned_cols=220 Identities=26% Similarity=0.397 Sum_probs=194.9
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCC-----cceEEEcCccCCc---
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPT-----TGDALVFGKNITA--- 629 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~-----~G~i~i~g~~i~~--- 629 (1833)
..++++||++.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++..
T Consensus 3 ~~l~~~~l~~~~~~----~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 78 (251)
T PRK14249 3 PKIKIRGVNFFYHK----HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78 (251)
T ss_pred ceEEEEEEEEEECC----eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccccc
Confidence 36899999999953 45999999999999999999999999999999999999997 6999999998742
Q ss_pred cHHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHH
Q 000224 630 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK-EELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLS 704 (1833)
Q Consensus 630 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~v~~~l~~~~L~----~~~~~~~~~LSgGqkqrl~ 704 (1833)
+....|+.+||+||++.+++. |++||+.+....++.. .++.+++++++++.+++. +..++.+.+||||||||++
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~ 157 (251)
T PRK14249 79 DVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLC 157 (251)
T ss_pred ChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHH
Confidence 234567889999999998875 9999999876555543 234556788888888874 4568899999999999999
Q ss_pred HHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 705 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 705 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
|||||+.+|+++||||||+|||+.++++++++|+++++++|||++||+++++..+|||+++|++|++++.|++.++..
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 235 (251)
T PRK14249 158 IARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFS 235 (251)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999999999999999999999999778999999999999999999999999999999999877754
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-40 Score=383.16 Aligned_cols=221 Identities=28% Similarity=0.408 Sum_probs=195.7
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcC------ccCCc-c
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFG------KNITA-D 630 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g------~~i~~-~ 630 (1833)
+.+.++|++|+|++ +.+++|+||++.+||+++|+|+||||||||+++|+|+++|++|+|.++| .++.. .
T Consensus 9 ~~i~~~~~~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~ 84 (257)
T PRK14246 9 DVFNISRLYLYIND----KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84 (257)
T ss_pred hheeeeeEEEecCC----ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCC
Confidence 57999999999953 4699999999999999999999999999999999999999997777665 44432 3
Q ss_pred HHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHHH
Q 000224 631 MDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV-KEELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLSL 705 (1833)
Q Consensus 631 ~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~v~~~l~~~~L~----~~~~~~~~~LSgGqkqrl~l 705 (1833)
....|+.+||+||++.+++.+|++||+.+....++. ++++.++++.++++.+++. +..++.+..||||||||++|
T Consensus 85 ~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~l 164 (257)
T PRK14246 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTI 164 (257)
T ss_pred HHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHH
Confidence 345678899999999999999999999987655443 3455667889999999996 35688999999999999999
Q ss_pred HHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 706 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 706 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
||||+.+|+++||||||+|||+.++++++++|.++++++|||++||+++++..+|||+++|++|++++.|++.++.+
T Consensus 165 aral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~~ 241 (257)
T PRK14246 165 ARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFT 241 (257)
T ss_pred HHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999999778999999999999999999999999999999999877653
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-40 Score=388.69 Aligned_cols=220 Identities=25% Similarity=0.393 Sum_probs=194.4
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCC-----CCcceEEEcCccCCc---
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP-----PTTGDALVFGKNITA--- 629 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~g~~i~~--- 629 (1833)
+.|+++||++.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|.++..
T Consensus 38 ~~l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~ 113 (286)
T PRK14275 38 PHVVAKNFSIYYGE----FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT 113 (286)
T ss_pred eEEEEeeeEEEECC----EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhccc
Confidence 56999999999953 359999999999999999999999999999999999864 599999999998742
Q ss_pred cHHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHH
Q 000224 630 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK-EELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLS 704 (1833)
Q Consensus 630 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~v~~~l~~~~L~----~~~~~~~~~LSgGqkqrl~ 704 (1833)
.....|+.+||+||++.+++. ||.||+.+.....+.. ....++++.++++.+|+. +..++++.+||||||||++
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~ 192 (286)
T PRK14275 114 DEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLC 192 (286)
T ss_pred chHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHH
Confidence 223467889999999988875 9999999876555543 334566788899999873 4668899999999999999
Q ss_pred HHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 705 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 705 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
|||||+.+|++|||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++|+++..|++.++.+
T Consensus 193 LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~~ 270 (286)
T PRK14275 193 VARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFT 270 (286)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999999999777999999999999999999999999999999999887754
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=384.06 Aligned_cols=222 Identities=24% Similarity=0.410 Sum_probs=191.5
Q ss_pred CcceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEEcCeeCC
Q 000224 1461 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY-----PTDGTAFIFGKDIR 1535 (1833)
Q Consensus 1461 ~~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~G~~i~ 1535 (1833)
.+++++++|++|+|++ +.+++|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|.++|+++.
T Consensus 18 ~~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 91 (268)
T PRK14248 18 KEHILEVKDLSIYYGE------KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNIL 91 (268)
T ss_pred CCceEEEEEEEEEeCC------ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcc
Confidence 4468999999999953 459999999999999999999999999999999999865 79999999999885
Q ss_pred C---ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCCh-hhHHHHHHHHHHHcCCc----cccCCCCCCCChhHH
Q 000224 1536 S---DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAE-YRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNK 1607 (1833)
Q Consensus 1536 ~---~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~-~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgG~k 1607 (1833)
. .....++++||+||++.+++. |++||+.+.....+... ...++.+.+.++.+++. +..++++++||||||
T Consensus 92 ~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 92 DSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQ 170 (268)
T ss_pred cccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHH
Confidence 3 223457789999999988874 99999987644433322 22345567788888874 456889999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecCh
Q 000224 1608 RKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1687 (1833)
Q Consensus 1608 qrl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~ 1687 (1833)
||++|||||+.+|++|||||||+|||+.+++.+++.|++++ + + +|||++||+++++..+|||+++|++|++++.|++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~-~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~ 247 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELK-E-E-YSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQT 247 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHh-c-C-CEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999984 3 3 5899999999999999999999999999999999
Q ss_pred hHHHh
Q 000224 1688 QHLKT 1692 (1833)
Q Consensus 1688 ~~l~~ 1692 (1833)
+++.+
T Consensus 248 ~~~~~ 252 (268)
T PRK14248 248 EQIFT 252 (268)
T ss_pred HHHHh
Confidence 88764
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=387.36 Aligned_cols=219 Identities=25% Similarity=0.410 Sum_probs=194.3
Q ss_pred cceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCC-----CCcceEEEcCccCCc--
Q 000224 557 GRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP-----PTTGDALVFGKNITA-- 629 (1833)
Q Consensus 557 ~~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~g~~i~~-- 629 (1833)
++.|+++||++.|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 37 ~~~l~i~~l~~~~~~----~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~ 112 (285)
T PRK14254 37 ETVIEARDLNVFYGD----EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDAD 112 (285)
T ss_pred CceEEEEEEEEEECC----EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence 357999999999953 469999999999999999999999999999999999997 699999999998742
Q ss_pred -cHHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHH
Q 000224 630 -DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLS 704 (1833)
Q Consensus 630 -~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~----~~~~~~~~~LSgGqkqrl~ 704 (1833)
+....++.+||+||++.+++. ||.||+.+.....+.+. ..+++++++++.+||. +..++++.+||||||||++
T Consensus 113 ~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~ 190 (285)
T PRK14254 113 VDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLC 190 (285)
T ss_pred cchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHH
Confidence 234567889999999988885 99999988766655543 4567889999999985 4568899999999999999
Q ss_pred HHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEE-EeeCCEEEeecCHHHHH
Q 000224 705 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIA-IMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 705 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~-im~~G~l~~~G~~~~Lk 781 (1833)
|||||+.+|++|||||||+|||+.+++.++++|+++++++|||++||+++++..+|||++ +|++|+++..|++.++.
T Consensus 191 LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 191 IARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999767899999999999999999976 57999999999887764
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-40 Score=381.03 Aligned_cols=219 Identities=21% Similarity=0.309 Sum_probs=188.5
Q ss_pred EEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCceEEEEcCeeCCCC-hHH-
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE--YPTDGTAFIFGKDIRSD-PKA- 1540 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~--~p~~G~i~i~G~~i~~~-~~~- 1540 (1833)
|+++||+|+|++ +.+++|+||+|++||++||+||||||||||+++|+|++ +|++|+|.++|+++... ...
T Consensus 1 l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~ 74 (243)
T TIGR01978 1 LKIKDLHVSVED------KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDER 74 (243)
T ss_pred CeEeeEEEEECC------EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHh
Confidence 468999999952 46999999999999999999999999999999999995 79999999999988642 222
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHHHcC-------CChhhHHHHHHHHHHHcCCc-cccCCCCC-CCChhHHHHHH
Q 000224 1541 ARRLIGYCPQFDALLEYLTVQEHLELYARIKG-------VAEYRMDDVVMEKLVEFDLL-KHAKKPSF-TLSGGNKRKLS 1611 (1833)
Q Consensus 1541 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g-------~~~~~~~~~~~~~l~~~~L~-~~~~~~~~-~LSgG~kqrl~ 1611 (1833)
.+..++|+||++.+++.+|++|++.+...... ....+..+.+.++++.++|. +..++++. +|||||||||+
T Consensus 75 ~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~ 154 (243)
T TIGR01978 75 ARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNE 154 (243)
T ss_pred hccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHH
Confidence 34559999999999999999999987543221 12223345678899999997 46788887 59999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHH-cCEEEEEECCEEEEecChhHH
Q 000224 1612 VAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQAL-CTRIGIMVGGQLRCIGSPQHL 1690 (1833)
Q Consensus 1612 lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l-~drv~im~~G~i~~~g~~~~l 1690 (1833)
||+||+.+|++|||||||+|||+.+++.+++.|+++++ +| +|||++||++++++.+ |||+++|++|++++.|+++++
T Consensus 155 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (243)
T TIGR01978 155 ILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PD-RSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELA 232 (243)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CC-cEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHh
Confidence 99999999999999999999999999999999999863 44 5899999999999998 899999999999999998865
Q ss_pred H
Q 000224 1691 K 1691 (1833)
Q Consensus 1691 ~ 1691 (1833)
.
T Consensus 233 ~ 233 (243)
T TIGR01978 233 K 233 (243)
T ss_pred c
Confidence 5
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=382.30 Aligned_cols=220 Identities=26% Similarity=0.396 Sum_probs=194.3
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCC-----cceEEEcCccCCc---c
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPT-----TGDALVFGKNITA---D 630 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~-----~G~i~i~g~~i~~---~ 630 (1833)
.++++||+|.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. +
T Consensus 4 ~l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (252)
T PRK14272 4 LLSAQDVNIYYGD----KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79 (252)
T ss_pred EEEEeeeEEEECC----EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccC
Confidence 5899999999952 46999999999999999999999999999999999999875 8999999998752 2
Q ss_pred HHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHHH
Q 000224 631 MDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV-KEELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLSL 705 (1833)
Q Consensus 631 ~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~v~~~l~~~~L~----~~~~~~~~~LSgGqkqrl~l 705 (1833)
....|+.+||+||++.+++.+|+.||+.+.....+. ..++..+.+.++++.+++. +..++++++||||||||++|
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 159 (252)
T PRK14272 80 PVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCI 159 (252)
T ss_pred HHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHH
Confidence 335677899999999999999999999876544443 2344566777888888763 45688899999999999999
Q ss_pred HHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 706 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 706 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
||||+.+|++|||||||+|||+.+++.+.++|+++++++|||++||+++++..+|||+++|++|+++..|++.++..
T Consensus 160 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14272 160 ARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFT 236 (252)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999878999999999999999999999999999999999887754
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=382.79 Aligned_cols=220 Identities=26% Similarity=0.430 Sum_probs=194.8
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCC--C---CcceEEEcCccCCc---
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP--P---TTGDALVFGKNITA--- 629 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~--p---~~G~i~i~g~~i~~--- 629 (1833)
..|+++|+++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+.+ | ++|+|.++|.++..
T Consensus 5 ~~i~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 80 (253)
T PRK14261 5 IILSTKNLNLWYGE----KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGA 80 (253)
T ss_pred ceEEEeeeEEEECC----eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccccc
Confidence 46999999999953 469999999999999999999999999999999999976 3 58999999998853
Q ss_pred cHHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHH
Q 000224 630 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV-KEELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLS 704 (1833)
Q Consensus 630 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~v~~~l~~~~L~----~~~~~~~~~LSgGqkqrl~ 704 (1833)
+....++.+||+||++.+++. ||+||+.+....++. .....++++.++++.+++. +..++.+.+||||||||++
T Consensus 81 ~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 159 (253)
T PRK14261 81 DVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLC 159 (253)
T ss_pred chhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHH
Confidence 234567889999999998885 999999987666553 2334566788899999884 3468899999999999999
Q ss_pred HHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 705 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 705 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
|||||+.+|+++||||||+|||+.++++++++|+++++++|||++||+++++..+|||+++|++|++++.|++.++..
T Consensus 160 laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 237 (253)
T PRK14261 160 IARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFE 237 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHh
Confidence 999999999999999999999999999999999999877999999999999999999999999999999999877753
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=381.24 Aligned_cols=220 Identities=25% Similarity=0.434 Sum_probs=191.5
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC--CC---CceEEEEcCeeCCC-
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE--YP---TDGTAFIFGKDIRS- 1536 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~--~p---~~G~i~i~G~~i~~- 1536 (1833)
++++++|++|+|++ +.+++|+||+|++||++||+||||||||||+++|+|+. +| ++|+|.++|+++..
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~ 77 (252)
T PRK14239 4 PILQVSDLSVYYNK------KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSP 77 (252)
T ss_pred ceEEEEeeEEEECC------eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCc
Confidence 47999999999953 45999999999999999999999999999999999985 46 59999999998853
Q ss_pred --ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCCh-hhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHHH
Q 000224 1537 --DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAE-YRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKRK 1609 (1833)
Q Consensus 1537 --~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~-~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgG~kqr 1609 (1833)
.....++.+||+||++.+++ +|++||+.+.....+... ...++.+.++++.+++. +..++++.+||||||||
T Consensus 78 ~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14239 78 RTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQR 156 (252)
T ss_pred ccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHH
Confidence 22345678999999998887 899999987655555432 23456677888898874 35688999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhH
Q 000224 1610 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1689 (1833)
Q Consensus 1610 l~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~ 1689 (1833)
++||+||+.+|++|||||||+|||+.+++.++++|+++. + + +|||++||+++++..+|||+++|++|++++.|++++
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T PRK14239 157 VCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLK-D-D-YTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQ 233 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHh-h-C-CeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999984 3 3 589999999999999999999999999999999988
Q ss_pred HHh
Q 000224 1690 LKT 1692 (1833)
Q Consensus 1690 l~~ 1692 (1833)
+.+
T Consensus 234 ~~~ 236 (252)
T PRK14239 234 MFM 236 (252)
T ss_pred HHh
Confidence 754
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=380.51 Aligned_cols=220 Identities=24% Similarity=0.392 Sum_probs=191.6
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCC---CCC--CceEEEEcCeeCCCC
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGE---EYP--TDGTAFIFGKDIRSD 1537 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl---~~p--~~G~i~i~G~~i~~~ 1537 (1833)
++++++|++|.|+. +.+++|+||+|++||++||+||||||||||+++|+|+ .+| ++|+|.++|+++...
T Consensus 2 ~~l~~~~~~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~ 75 (250)
T PRK14245 2 VKIDARDVNFWYGD------FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDK 75 (250)
T ss_pred cEEEEEEEEEEECC------EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccc
Confidence 47899999999953 4599999999999999999999999999999999997 455 589999999988542
Q ss_pred ---hHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCCh-hhHHHHHHHHHHHcCCcc----ccCCCCCCCChhHHHH
Q 000224 1538 ---PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAE-YRMDDVVMEKLVEFDLLK----HAKKPSFTLSGGNKRK 1609 (1833)
Q Consensus 1538 ---~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~-~~~~~~~~~~l~~~~L~~----~~~~~~~~LSgG~kqr 1609 (1833)
....++.+||+||++.+++ .|+.||+.+....++... ...++.+.++++.+++.+ ..++++.+||||||||
T Consensus 76 ~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14245 76 GVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQR 154 (250)
T ss_pred cccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHH
Confidence 2456778999999988887 699999987655554432 234566788899999853 4688999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhH
Q 000224 1610 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1689 (1833)
Q Consensus 1610 l~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~ 1689 (1833)
++|||||+.+|++|||||||+|||+.+++.+++.|+++. + + +|||++||+++++..+|||+++|++|++++.|++++
T Consensus 155 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~-~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~ 231 (250)
T PRK14245 155 LCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-K-D-YTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKK 231 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-C-CeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999984 3 4 589999999999999999999999999999999998
Q ss_pred HHh
Q 000224 1690 LKT 1692 (1833)
Q Consensus 1690 l~~ 1692 (1833)
+.+
T Consensus 232 ~~~ 234 (250)
T PRK14245 232 IFT 234 (250)
T ss_pred Hhc
Confidence 864
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=381.41 Aligned_cols=218 Identities=28% Similarity=0.442 Sum_probs=193.3
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCC-----CcceEEEcCccCCc--cH
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP-----TTGDALVFGKNITA--DM 631 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~g~~i~~--~~ 631 (1833)
.++++|++|.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. +.
T Consensus 3 ~l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~ 78 (249)
T PRK14253 3 KFNIENLDLFYGE----NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78 (249)
T ss_pred eEEEeccEEEECC----eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccch
Confidence 4889999999953 4699999999999999999999999999999999999986 59999999998742 34
Q ss_pred HHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHHHH
Q 000224 632 DEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK-EELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLSLG 706 (1833)
Q Consensus 632 ~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~v~~~l~~~~L~----~~~~~~~~~LSgGqkqrl~lA 706 (1833)
...|+.+||+||++.+++ .||.||+.+.....+.. .+..++++.++++.+++. +..++++.+||||||||++||
T Consensus 79 ~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 157 (249)
T PRK14253 79 ADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIA 157 (249)
T ss_pred HHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHH
Confidence 566788999999999887 79999998765444433 344567788899999875 356788999999999999999
Q ss_pred HHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 707 IALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 707 ~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
|||+.+|++|||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++|+++..|++..+.
T Consensus 158 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 158 RTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999977799999999999999999999999999999999887664
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=402.42 Aligned_cols=230 Identities=28% Similarity=0.462 Sum_probs=205.4
Q ss_pred cceEEEEeeEEEecCC-------CCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCC-
Q 000224 557 GRCIQIRKLHKVYATK-------RGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT- 628 (1833)
Q Consensus 557 ~~~i~i~~l~k~y~~~-------~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~- 628 (1833)
.+.++++||+|.|..+ .+.+.||+||||++++||++||+|++|||||||.++|+|+++|++|+|.++|.+..
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~ 357 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDL 357 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccc
Confidence 3679999999999852 23578999999999999999999999999999999999999999999999998732
Q ss_pred --ccHHHhhcceEEEccCC--CCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCCc-ccccccCCCChhHHHH
Q 000224 629 --ADMDEIRKGLGVCPQYD--ILFPELTVREHLEMFAVLKGV-KEELLESVVAEMVDEVGLAD-KVNIVVRALSGGMKRK 702 (1833)
Q Consensus 629 --~~~~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~v~~~l~~~~L~~-~~~~~~~~LSgGqkqr 702 (1833)
.+....|+.+-+++||| .|.|.+||.+.|.-....++. ...+.++++.++++.+||.. ..++++++||||||||
T Consensus 358 ~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQR 437 (539)
T COG1123 358 TGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQR 437 (539)
T ss_pred ccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHH
Confidence 23455778899999998 599999999999887776543 34666778999999999986 6899999999999999
Q ss_pred HHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q 000224 703 LSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFL 780 (1833)
Q Consensus 703 l~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~--g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~L 780 (1833)
++|||||+.+|++|++|||||.||+..+.++.++|+++++ |.|.|+|||||+.++.+||||++|.+|++++.|+.+.+
T Consensus 438 vaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v 517 (539)
T COG1123 438 VAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKV 517 (539)
T ss_pred HHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999964 89999999999999999999999999999999988777
Q ss_pred HhhhCC
Q 000224 781 KHQYGV 786 (1833)
Q Consensus 781 k~~~g~ 786 (1833)
.+....
T Consensus 518 ~~~p~h 523 (539)
T COG1123 518 FENPQH 523 (539)
T ss_pred hcCCCC
Confidence 654333
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=384.53 Aligned_cols=219 Identities=28% Similarity=0.430 Sum_probs=194.9
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCC-----CCcceEEEcCccCCc---
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP-----PTTGDALVFGKNITA--- 629 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~g~~i~~--- 629 (1833)
..++++|+++.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 24 ~~l~~~nl~~~~~~----~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 24 TALEVRNLNLFYGD----KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred cEEEEEEEEEEECC----eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 46999999999953 369999999999999999999999999999999999988 489999999998853
Q ss_pred cHHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCCc----ccccccCCCChhHHHHHH
Q 000224 630 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK-EELLESVVAEMVDEVGLAD----KVNIVVRALSGGMKRKLS 704 (1833)
Q Consensus 630 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~v~~~l~~~~L~~----~~~~~~~~LSgGqkqrl~ 704 (1833)
+....|+.+||+||++.+++. |++||+.+.....+.. .+..+++++++++.+++.+ ..++.+.+||||||||++
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 178 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLV 178 (272)
T ss_pred CHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHH
Confidence 234567899999999998886 9999998876555542 3344567889999999863 568889999999999999
Q ss_pred HHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 705 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 705 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
|||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+||||++|++|+++..|++.++.
T Consensus 179 laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 179 IARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHh
Confidence 99999999999999999999999999999999999977899999999999999999999999999999999987764
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=382.82 Aligned_cols=221 Identities=21% Similarity=0.388 Sum_probs=192.8
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCcc-----CCc-cH
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKN-----ITA-DM 631 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~-----i~~-~~ 631 (1833)
..++++||++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ +.. ..
T Consensus 5 ~~l~~~~l~~~~~~----~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~ 80 (258)
T PRK11701 5 PLLSVRGLTKLYGP----RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSE 80 (258)
T ss_pred ceEEEeeeEEEcCC----ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCH
Confidence 36999999999953 369999999999999999999999999999999999999999999999987 642 12
Q ss_pred HH----hhcceEEEccCCC--CCCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCCc-ccccccCCCChhHHHHH
Q 000224 632 DE----IRKGLGVCPQYDI--LFPELTVREHLEMFAVLKG-VKEELLESVVAEMVDEVGLAD-KVNIVVRALSGGMKRKL 703 (1833)
Q Consensus 632 ~~----~r~~ig~~~Q~~~--l~~~lTv~e~l~~~~~~~~-~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~LSgGqkqrl 703 (1833)
.. .++.+||+||++. +++.+|+.||+.+.....+ ....+.++++.++++.+++.+ ..++.+.+||||||||+
T Consensus 81 ~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl 160 (258)
T PRK11701 81 AERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRL 160 (258)
T ss_pred HHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHH
Confidence 11 3567999999973 6778899999976433222 223355678899999999974 67899999999999999
Q ss_pred HHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 704 SLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 704 ~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
+|||||+.+|++|||||||+|||+.+++++++.|++++ + |.|||++||+++++..+||||++|++|+++..|++.++.
T Consensus 161 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 161 QIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999985 3 899999999999999999999999999999999988775
Q ss_pred h
Q 000224 782 H 782 (1833)
Q Consensus 782 ~ 782 (1833)
.
T Consensus 241 ~ 241 (258)
T PRK11701 241 D 241 (258)
T ss_pred c
Confidence 3
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=382.86 Aligned_cols=219 Identities=27% Similarity=0.443 Sum_probs=193.9
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCC-----CcceEEEcCccCCc---
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP-----TTGDALVFGKNITA--- 629 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~g~~i~~--- 629 (1833)
..++++||++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++..
T Consensus 6 ~~l~~~~l~~~~~~----~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (259)
T PRK14260 6 PAIKVKDLSFYYNT----SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRI 81 (259)
T ss_pred ceEEEEEEEEEECC----eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccccc
Confidence 36999999999953 4699999999999999999999999999999999999985 58999999998742
Q ss_pred cHHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHH
Q 000224 630 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKG-VKEELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLS 704 (1833)
Q Consensus 630 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~-~~~~~~~~~v~~~l~~~~L~----~~~~~~~~~LSgGqkqrl~ 704 (1833)
.....++++||+||++.+++ +|++||+.+.....+ .++.+.++++.++++.+|+. +..++.+.+||||||||++
T Consensus 82 ~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 160 (259)
T PRK14260 82 NINRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLC 160 (259)
T ss_pred chHhhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHH
Confidence 23456778999999999887 899999987655443 24445566788999999884 4578899999999999999
Q ss_pred HHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEee-----CCEEEeecCHHH
Q 000224 705 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMA-----NGSLKCCGSSLF 779 (1833)
Q Consensus 705 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~-----~G~l~~~G~~~~ 779 (1833)
|||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|+ +|++++.|++.+
T Consensus 161 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~ 240 (259)
T PRK14260 161 IARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQ 240 (259)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHH
Confidence 999999999999999999999999999999999999878999999999999999999999998 599999999887
Q ss_pred HH
Q 000224 780 LK 781 (1833)
Q Consensus 780 Lk 781 (1833)
+.
T Consensus 241 ~~ 242 (259)
T PRK14260 241 IF 242 (259)
T ss_pred Hh
Confidence 64
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=384.72 Aligned_cols=221 Identities=22% Similarity=0.325 Sum_probs=191.3
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC--------ceEEEEcCeeCC
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT--------DGTAFIFGKDIR 1535 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~--------~G~i~i~G~~i~ 1535 (1833)
+|+++|++|+|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.++|.++.
T Consensus 1 ml~~~nl~~~~~~------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~ 74 (272)
T PRK13547 1 MLTADHLHVARRH------RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLA 74 (272)
T ss_pred CeEEEEEEEEECC------EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcc
Confidence 4789999999953 46999999999999999999999999999999999999998 999999999885
Q ss_pred C-ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHc----CCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHH
Q 000224 1536 S-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIK----GVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKL 1610 (1833)
Q Consensus 1536 ~-~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~----g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl 1610 (1833)
. .....++.++|+||++.++..+|++||+.+..... +....+..+.+.++++.+++.+..++++.+|||||||||
T Consensus 75 ~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 154 (272)
T PRK13547 75 AIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARV 154 (272)
T ss_pred cCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHH
Confidence 4 34455667999999987656689999997643211 111123345678899999999888999999999999999
Q ss_pred HHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEE
Q 000224 1611 SVAIAMI---------GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681 (1833)
Q Consensus 1611 ~lA~al~---------~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i 1681 (1833)
+||+||+ .+|++|||||||+|||+.+++.+++.|+++.++.| +|||++||+++++..+|||+++|++|++
T Consensus 155 ~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tviiisH~~~~~~~~~d~i~~l~~G~i 233 (272)
T PRK13547 155 QFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWN-LGVLAIVHDPNLAARHADRIAMLADGAI 233 (272)
T ss_pred HHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcC-CEEEEEECCHHHHHHhCCEEEEEECCeE
Confidence 9999999 59999999999999999999999999999864334 6899999999999999999999999999
Q ss_pred EEecChhHHH
Q 000224 1682 RCIGSPQHLK 1691 (1833)
Q Consensus 1682 ~~~g~~~~l~ 1691 (1833)
+..|+++++.
T Consensus 234 ~~~g~~~~~~ 243 (272)
T PRK13547 234 VAHGAPADVL 243 (272)
T ss_pred EEecCHHHHc
Confidence 9999987764
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=379.70 Aligned_cols=219 Identities=23% Similarity=0.456 Sum_probs=191.5
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEEcCeeCCC--
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP-----TDGTAFIFGKDIRS-- 1536 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~G~~i~~-- 1536 (1833)
.|+++|++|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+.+| ++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14240 3 KISVKDLDLFYGD------FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD 76 (250)
T ss_pred eEEEEEEEEEECC------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 5889999999963 4599999999999999999999999999999999999763 79999999998863
Q ss_pred -ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCC-hhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHHHH
Q 000224 1537 -DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVA-EYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKRKL 1610 (1833)
Q Consensus 1537 -~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~-~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgG~kqrl 1610 (1833)
.....++.+||+||++.+++ +|++||+.+.....+.. ....++.+.++++.+++. +..++++.+||||||||+
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 155 (250)
T PRK14240 77 IDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRL 155 (250)
T ss_pred cchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHH
Confidence 23356778999999988887 89999998766555542 233456778888888874 356889999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000224 1611 SVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690 (1833)
Q Consensus 1611 ~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l 1690 (1833)
+|||||+.+|++|||||||+|||+.+++.+++.|++++ + + .|||++||+++++..+|||+++|++|++++.|+++++
T Consensus 156 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~-~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 156 CIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-K-D-YTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-C-CeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999984 3 4 5899999999999999999999999999999999887
Q ss_pred Hh
Q 000224 1691 KT 1692 (1833)
Q Consensus 1691 ~~ 1692 (1833)
..
T Consensus 233 ~~ 234 (250)
T PRK14240 233 FT 234 (250)
T ss_pred Hh
Confidence 54
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-40 Score=376.80 Aligned_cols=215 Identities=29% Similarity=0.479 Sum_probs=189.8
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCC---CCcceEEEcCccCCccHHHhh
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP---PTTGDALVFGKNITADMDEIR 635 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~---p~~G~i~i~g~~i~~~~~~~r 635 (1833)
.++++|++++|++.++.+.+++|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ...|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~--~~~~ 80 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP--DQFQ 80 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh--HHhc
Confidence 46789999999764334679999999999999999999999999999999999999 999999999998752 3567
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcCC---CHHHHHHHHHH-HHHHcCCCcccccccCCCChhHHHHHHHHHHHhC
Q 000224 636 KGLGVCPQYDILFPELTVREHLEMFAVLKGV---KEELLESVVAE-MVDEVGLADKVNIVVRALSGGMKRKLSLGIALIG 711 (1833)
Q Consensus 636 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~---~~~~~~~~v~~-~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~ 711 (1833)
+.+||+||++.+++.+||+||+.+.....+. ..+...+++++ .++.+++.+..++.+++||||||||++|||||+.
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 160 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLW 160 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHh
Confidence 8899999999999999999999987654321 22223345555 8999999988899999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCH-HHHHhhcCEEEEeeCCEEEeec
Q 000224 712 DSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSM-DEAEELGDRIAIMANGSLKCCG 775 (1833)
Q Consensus 712 ~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~-~e~~~l~Dri~im~~G~l~~~G 775 (1833)
+|+++||||||+|||+.+++.++++|++++ +|+|+|++||++ +++..+|||+++|++|++++.|
T Consensus 161 ~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 161 DPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999985 589999999999 6999999999999999998765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=380.79 Aligned_cols=218 Identities=23% Similarity=0.427 Sum_probs=192.1
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCC-----CCcceEEEcCccCCc---cH
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP-----PTTGDALVFGKNITA---DM 631 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~g~~i~~---~~ 631 (1833)
-+++||++.|+ ++.+++|+||+|.+||+++|+|+||||||||+++|+|+.+ |++|+|.++|.++.. ..
T Consensus 6 ~~~~~l~~~~~----~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 81 (251)
T PRK14244 6 ASVKNLNLWYG----SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNV 81 (251)
T ss_pred EEeeeEEEEEC----CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccch
Confidence 56899999995 3469999999999999999999999999999999999986 579999999988742 22
Q ss_pred HHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHcCCCc----ccccccCCCChhHHHHHHH
Q 000224 632 DEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV--KEELLESVVAEMVDEVGLAD----KVNIVVRALSGGMKRKLSL 705 (1833)
Q Consensus 632 ~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~--~~~~~~~~v~~~l~~~~L~~----~~~~~~~~LSgGqkqrl~l 705 (1833)
...|+.+||+||++.+++. |+.||+.+....++. .....++++.++++.+||.+ ..++.+.+||||||||++|
T Consensus 82 ~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~l 160 (251)
T PRK14244 82 VLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCI 160 (251)
T ss_pred HHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHH
Confidence 3467889999999988886 999999876544443 23445677889999999965 4578899999999999999
Q ss_pred HHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 706 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 706 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
||||+.+|++|||||||+|||+.+++.+++.|+++++|+|||++||+++++..+||||++|++|+++..|++.++.+
T Consensus 161 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (251)
T PRK14244 161 ARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFK 237 (251)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999878999999999999999999999999999999999877643
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=384.11 Aligned_cols=220 Identities=27% Similarity=0.453 Sum_probs=193.1
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCC-----CCcceEEEcCccCCc---
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP-----PTTGDALVFGKNITA--- 629 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~g~~i~~--- 629 (1833)
+.++++||++.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 23 ~~l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 98 (271)
T PRK14238 23 VVFDTQNLNLWYGE----DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY 98 (271)
T ss_pred eEEEEeeeEEEECC----cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc
Confidence 46999999999953 359999999999999999999999999999999999997 699999999998742
Q ss_pred cHHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCC----CcccccccCCCChhHHHHHH
Q 000224 630 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK-EELLESVVAEMVDEVGL----ADKVNIVVRALSGGMKRKLS 704 (1833)
Q Consensus 630 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~v~~~l~~~~L----~~~~~~~~~~LSgGqkqrl~ 704 (1833)
.....++.+||+||++.+++. |++||+.+.....+.. ....++.+.++++.+++ .+..++++.+||||||||++
T Consensus 99 ~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~ 177 (271)
T PRK14238 99 SVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLC 177 (271)
T ss_pred cHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHH
Confidence 334567889999999988874 9999999876544433 23345667788888754 45568899999999999999
Q ss_pred HHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 705 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 705 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
|||||+.+|++|||||||+|||+.+++++.++|+++++++|||++||+++++..+|||+++|++|+++..|++.++.+
T Consensus 178 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 255 (271)
T PRK14238 178 IARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFS 255 (271)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 999999999999999999999999999999999999878999999999999999999999999999999999877643
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=346.66 Aligned_cols=222 Identities=28% Similarity=0.434 Sum_probs=202.8
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcC-ccCCc--cHHHh
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFG-KNITA--DMDEI 634 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g-~~i~~--~~~~~ 634 (1833)
..+.++||+.+|+ +..||+++||++.+||.-+|+|||||||||+|.+|+|..+|+.|+|+++| .|++. ..+-.
T Consensus 4 ~iL~~~~vsVsF~----GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IA 79 (249)
T COG4674 4 IILYLDGVSVSFG----GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIA 79 (249)
T ss_pred ceEEEeceEEEEc----ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHH
Confidence 4689999999995 45699999999999999999999999999999999999999999999999 78864 34456
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHH--------hcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHH
Q 000224 635 RKGLGVCPQYDILFPELTVREHLEMFAV--------LKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLG 706 (1833)
Q Consensus 635 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~--------~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA 706 (1833)
|..||--+|.|..|+++||+|||.+... +......+-+++++++|...||.+.+++.+..||-||||+|.|+
T Consensus 80 r~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIG 159 (249)
T COG4674 80 RAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIG 159 (249)
T ss_pred HhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhh
Confidence 7889999999999999999999988543 22222344567899999999999999999999999999999999
Q ss_pred HHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q 000224 707 IALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 783 (1833)
Q Consensus 707 ~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~ 783 (1833)
+.++++|++|+||||++||....+++.-++|+.++++++|+++.|||+++..+||||.+|++|++.|.|+.+++.+.
T Consensus 160 Mll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~d 236 (249)
T COG4674 160 MLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQND 236 (249)
T ss_pred eeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887654
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=378.63 Aligned_cols=219 Identities=27% Similarity=0.475 Sum_probs=192.0
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEEcCeeCCCC-
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP-----TDGTAFIFGKDIRSD- 1537 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~G~~i~~~- 1537 (1833)
+|+++|++|.|++ +.+++|+||++++||++||+||||||||||+++|+|+++| ++|+|.++|.++...
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~ 76 (250)
T PRK14262 3 IIEIENFSAYYGE------KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQ 76 (250)
T ss_pred eEEEEeeEEEeCC------ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccch
Confidence 6899999999952 4699999999999999999999999999999999999884 899999999987532
Q ss_pred --hHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCC-hhhHHHHHHHHHHHcCCcc----ccCCCCCCCChhHHHHH
Q 000224 1538 --PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVA-EYRMDDVVMEKLVEFDLLK----HAKKPSFTLSGGNKRKL 1610 (1833)
Q Consensus 1538 --~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~-~~~~~~~~~~~l~~~~L~~----~~~~~~~~LSgG~kqrl 1610 (1833)
....++.+||+||++.+++ +|++||+.+.....+.. ....++.+.++++.+++.+ ..++++.+||||||||+
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~ 155 (250)
T PRK14262 77 LDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRL 155 (250)
T ss_pred hhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHH
Confidence 2345678999999998887 89999998765544433 2234556778888888853 47889999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000224 1611 SVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690 (1833)
Q Consensus 1611 ~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l 1690 (1833)
+||+||+.+|++|||||||+|||+.+++.+++.|++++ + + +|||++||+++++..+|||+++|++|++++.|+++++
T Consensus 156 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~-~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 156 CIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELS-E-N-YTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHh-c-C-cEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999985 3 4 5899999999999999999999999999999999888
Q ss_pred Hh
Q 000224 1691 KT 1692 (1833)
Q Consensus 1691 ~~ 1692 (1833)
.+
T Consensus 233 ~~ 234 (250)
T PRK14262 233 VE 234 (250)
T ss_pred Hh
Confidence 65
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=385.08 Aligned_cols=222 Identities=24% Similarity=0.364 Sum_probs=192.6
Q ss_pred CcceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEEcCeeCC
Q 000224 1461 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY-----PTDGTAFIFGKDIR 1535 (1833)
Q Consensus 1461 ~~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~G~~i~ 1535 (1833)
.+++|+++|++++|++ +.+++|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.++|.++.
T Consensus 36 ~~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~ 109 (286)
T PRK14275 36 GKPHVVAKNFSIYYGE------FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIY 109 (286)
T ss_pred CceEEEEeeeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhh
Confidence 4568999999999953 459999999999999999999999999999999999864 49999999999875
Q ss_pred C---ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCC-hhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHH
Q 000224 1536 S---DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVA-EYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNK 1607 (1833)
Q Consensus 1536 ~---~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~-~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgG~k 1607 (1833)
. .....++++||+||++.+++. |+.||+.+.....+.. ....++.+.++++.+++. +..++++.+||||||
T Consensus 110 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~ 188 (286)
T PRK14275 110 GKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQ 188 (286)
T ss_pred hcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHH
Confidence 3 223457789999999988874 9999999865554543 223445677888888873 467889999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecCh
Q 000224 1608 RKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1687 (1833)
Q Consensus 1608 qrl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~ 1687 (1833)
|||+|||||+.+|++|||||||+|||+.+++.+++.|++++ + + +|||++||+++++..+|||+++|++|+++..|++
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~-~-~-~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~ 265 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELR-G-S-YTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPT 265 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999985 3 3 5899999999999999999999999999999999
Q ss_pred hHHHh
Q 000224 1688 QHLKT 1692 (1833)
Q Consensus 1688 ~~l~~ 1692 (1833)
+++.+
T Consensus 266 ~~~~~ 270 (286)
T PRK14275 266 AQLFT 270 (286)
T ss_pred HHHHh
Confidence 88764
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=379.57 Aligned_cols=218 Identities=23% Similarity=0.349 Sum_probs=190.0
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC----CceEEEEcCeeCCCChH
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP----TDGTAFIFGKDIRSDPK 1539 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p----~~G~i~i~G~~i~~~~~ 1539 (1833)
+|+++|++|+|+ +.+++|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|+++.. ..
T Consensus 4 ~l~~~~l~~~~~-------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~-~~ 75 (254)
T PRK10418 4 QIELRNIALQAA-------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP-CA 75 (254)
T ss_pred EEEEeCeEEEec-------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccc-cc
Confidence 689999999992 3489999999999999999999999999999999999999 99999999998853 22
Q ss_pred HhccceEEEecCCC--CCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCcc---ccCCCCCCCChhHHHHHHHHH
Q 000224 1540 AARRLIGYCPQFDA--LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK---HAKKPSFTLSGGNKRKLSVAI 1614 (1833)
Q Consensus 1540 ~~~~~ig~~pQ~~~--l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~---~~~~~~~~LSgG~kqrl~lA~ 1614 (1833)
..++.+||+||++. +.+.+|+.+++.......+... .++.+.++++.+++.+ ..++++.+|||||||||+|||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~lar 153 (254)
T PRK10418 76 LRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPA--DDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIAL 153 (254)
T ss_pred cccceEEEEecCCccccCccccHHHHHHHHHHHcCCCh--HHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHH
Confidence 23467999999974 4456799999876554444432 2356788999999976 468999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1615 AMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1615 al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
||+.+|++|||||||+|||+.+++.+++.|++++++.| +|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 154 al~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g-~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 154 ALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRA-LGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred HHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcC-cEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999999999999999999864434 689999999999999999999999999999999988864
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=383.82 Aligned_cols=221 Identities=25% Similarity=0.453 Sum_probs=192.8
Q ss_pred CcceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEEcCeeCC
Q 000224 1461 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY-----PTDGTAFIFGKDIR 1535 (1833)
Q Consensus 1461 ~~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~G~~i~ 1535 (1833)
++++|+++|++|+|++ +.+++|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 36 ~~~~l~i~~l~~~~~~------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~ 109 (285)
T PRK14254 36 GETVIEARDLNVFYGD------EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVY 109 (285)
T ss_pred CCceEEEEEEEEEECC------EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcc
Confidence 4568999999999953 459999999999999999999999999999999999987 69999999999874
Q ss_pred C---ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHH
Q 000224 1536 S---DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKR 1608 (1833)
Q Consensus 1536 ~---~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgG~kq 1608 (1833)
. .....++++||+||++.+++. |+.||+.+.....+.+. ...+++.++++.+++. +..++++.+|||||||
T Consensus 110 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~q 187 (285)
T PRK14254 110 DADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQ 187 (285)
T ss_pred ccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHH
Confidence 3 234567789999999888875 99999987665555443 3456678889999884 4578999999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEE-EEECCEEEEecCh
Q 000224 1609 KLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIG-IMVGGQLRCIGSP 1687 (1833)
Q Consensus 1609 rl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~-im~~G~i~~~g~~ 1687 (1833)
||+||+||+.+|+||||||||+|||+.+++.++++|+++++ + .|||++||+++++..+|||++ +|++|++++.|++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~--~-~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~ 264 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE--E-YTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDT 264 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCH
Confidence 99999999999999999999999999999999999999853 3 489999999999999999976 5699999999998
Q ss_pred hHHHh
Q 000224 1688 QHLKT 1692 (1833)
Q Consensus 1688 ~~l~~ 1692 (1833)
+++..
T Consensus 265 ~~~~~ 269 (285)
T PRK14254 265 DKIFE 269 (285)
T ss_pred HHHHh
Confidence 88754
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=381.22 Aligned_cols=219 Identities=24% Similarity=0.422 Sum_probs=186.5
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHHhhcce
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGL 638 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~i 638 (1833)
|+++||++.|+.. .+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. +....++.+
T Consensus 1 i~~~~l~~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 78 (237)
T cd03252 1 ITFEHVRFRYKPD--GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQV 78 (237)
T ss_pred CEEEEEEEecCCC--CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcE
Confidence 4689999999642 2469999999999999999999999999999999999999999999999998753 344567889
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCCcccccccCCCChhHHHHHHHHHHHhC
Q 000224 639 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLES-----VVAEMVDEV--GLADKVNIVVRALSGGMKRKLSLGIALIG 711 (1833)
Q Consensus 639 g~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~~~~~~LSgGqkqrl~lA~al~~ 711 (1833)
||+||++.+++ .||.||+.+... +.......+ .+.++++.+ ++.+..++++.+|||||||||+|||||+.
T Consensus 79 ~~~~q~~~~~~-~tv~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~ 155 (237)
T cd03252 79 GVVLQENVLFN-RSIRDNIALADP--GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIH 155 (237)
T ss_pred EEEcCCchhcc-chHHHHhhccCC--CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhh
Confidence 99999998875 699999987431 222222211 234455555 66666788999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhh
Q 000224 712 DSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQY 784 (1833)
Q Consensus 712 ~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~~ 784 (1833)
+|++|||||||+|||+.+++.+++.|+++++|+|||++||++++++ .|||+++|++|+++..|++.++....
T Consensus 156 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~~~~~~~~~~~ 227 (237)
T cd03252 156 NPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK-NADRIIVMEKGRIVEQGSHDELLAEN 227 (237)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEEcCHHHHHhcc
Confidence 9999999999999999999999999999977999999999999996 59999999999999999988876553
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=342.62 Aligned_cols=222 Identities=23% Similarity=0.400 Sum_probs=202.8
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-----
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD----- 1537 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~----- 1537 (1833)
+.|+++||.|+|| ...+|++||++-++|+++.|+|.+||||||++++|.=+.+|+.|.|.++|+.++..
T Consensus 5 ~~l~v~dlHK~~G------~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G 78 (256)
T COG4598 5 NALEVEDLHKRYG------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDG 78 (256)
T ss_pred cceehhHHHhhcc------cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCC
Confidence 4689999999996 46799999999999999999999999999999999999999999999999887421
Q ss_pred ------h---HHhccceEEEecCCCCCCCCCHHHHHHHH-HHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHH
Q 000224 1538 ------P---KAARRLIGYCPQFDALLEYLTVQEHLELY-ARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNK 1607 (1833)
Q Consensus 1538 ------~---~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~-~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~k 1607 (1833)
. .++|.++|+|+|+..||..|||.||+.-. -..-|.++.+..++++.+|.++|+.+..+.++..||||||
T Consensus 79 ~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQ 158 (256)
T COG4598 79 QLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQ 158 (256)
T ss_pred CeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHH
Confidence 1 34677899999999999999999997542 2345888888889999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecCh
Q 000224 1608 RKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1687 (1833)
Q Consensus 1608 qrl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~ 1687 (1833)
||++|||||+.+|+++++|||||+|||+-.-++.+.+++++ ++| +|.+++||.|.++..++++|+.+++|++-+.|+|
T Consensus 159 QR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LA-eEg-rTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P 236 (256)
T COG4598 159 QRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLA-EEG-RTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPP 236 (256)
T ss_pred HHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHH-HhC-CeEEEEeeehhHHHhhhhheEEeecceecccCCh
Confidence 99999999999999999999999999999999999999997 455 5899999999999999999999999999999999
Q ss_pred hHHHh
Q 000224 1688 QHLKT 1692 (1833)
Q Consensus 1688 ~~l~~ 1692 (1833)
+++..
T Consensus 237 ~qvf~ 241 (256)
T COG4598 237 EQVFG 241 (256)
T ss_pred HHHhc
Confidence 99864
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=379.41 Aligned_cols=222 Identities=23% Similarity=0.417 Sum_probs=193.6
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-----ceEEEEcCeeCCC-
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT-----DGTAFIFGKDIRS- 1536 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~-----~G~i~i~G~~i~~- 1536 (1833)
.+|+++|++|+|++ ..+++|+||++++||++||+|+||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 6 ~~l~~~nl~~~~~~------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~ 79 (261)
T PRK14258 6 PAIKVNNLSFYYDT------QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYER 79 (261)
T ss_pred ceEEEeeEEEEeCC------eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcc
Confidence 36899999999953 35899999999999999999999999999999999999986 8999999998742
Q ss_pred --ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCC-ChhhHHHHHHHHHHHcCCcc----ccCCCCCCCChhHHHH
Q 000224 1537 --DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGV-AEYRMDDVVMEKLVEFDLLK----HAKKPSFTLSGGNKRK 1609 (1833)
Q Consensus 1537 --~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~-~~~~~~~~~~~~l~~~~L~~----~~~~~~~~LSgG~kqr 1609 (1833)
.....++.++|+||++.+++ +|++||+.+.....+. +..+..+.+.++++.+++.+ ..++++.+||||||||
T Consensus 80 ~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 158 (261)
T PRK14258 80 RVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQR 158 (261)
T ss_pred ccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHH
Confidence 22356778999999988887 8999999876554443 33334456778899998743 4688999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEEC-----CEEEEe
Q 000224 1610 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVG-----GQLRCI 1684 (1833)
Q Consensus 1610 l~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~-----G~i~~~ 1684 (1833)
++|||||+.+|++|||||||+|||+.+++.+++.|+++++++| +|||++||+++++..+||||++|++ |+++..
T Consensus 159 v~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~-~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 237 (261)
T PRK14258 159 LCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSE-LTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEF 237 (261)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCC-CEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEe
Confidence 9999999999999999999999999999999999999864444 6899999999999999999999999 999999
Q ss_pred cChhHHHh
Q 000224 1685 GSPQHLKT 1692 (1833)
Q Consensus 1685 g~~~~l~~ 1692 (1833)
|+++++.+
T Consensus 238 ~~~~~~~~ 245 (261)
T PRK14258 238 GLTKKIFN 245 (261)
T ss_pred CCHHHHHh
Confidence 99998864
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=380.12 Aligned_cols=221 Identities=24% Similarity=0.377 Sum_probs=193.3
Q ss_pred cceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEEcCeeCCC
Q 000224 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY-----PTDGTAFIFGKDIRS 1536 (1833)
Q Consensus 1462 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~G~~i~~ 1536 (1833)
..+|+++|++|+|+ ++.+++|+||++++||++||+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 18 ~~~l~~~nl~~~~~------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 91 (267)
T PRK14237 18 EIALSTKDLHVYYG------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINR 91 (267)
T ss_pred CeEEEEeeEEEEEC------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccc
Confidence 45799999999995 2569999999999999999999999999999999999986 589999999998853
Q ss_pred ---ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCC-ChhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHH
Q 000224 1537 ---DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGV-AEYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKR 1608 (1833)
Q Consensus 1537 ---~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~-~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgG~kq 1608 (1833)
.....++.|||+||++.+++ .|++||+.+.....+. .+...++++.++++.++|. +..++++.+|||||||
T Consensus 92 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~q 170 (267)
T PRK14237 92 KEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQ 170 (267)
T ss_pred ccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHH
Confidence 23355778999999988887 6999999876544443 2334456678889999884 3578899999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChh
Q 000224 1609 KLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1688 (1833)
Q Consensus 1609 rl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~ 1688 (1833)
|++|||||+.+|++|||||||+|||+.+++.++++|+++. + + .|||++||+++++..+|||+++|++|++++.|+++
T Consensus 171 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~-~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 247 (267)
T PRK14237 171 RLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-K-N-YTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTR 247 (267)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-C-CEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999984 3 4 58999999999999999999999999999999998
Q ss_pred HHHh
Q 000224 1689 HLKT 1692 (1833)
Q Consensus 1689 ~l~~ 1692 (1833)
++..
T Consensus 248 ~~~~ 251 (267)
T PRK14237 248 NIFT 251 (267)
T ss_pred HHhc
Confidence 8754
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=378.16 Aligned_cols=220 Identities=23% Similarity=0.391 Sum_probs=191.6
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEEcCeeCCC-
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY-----PTDGTAFIFGKDIRS- 1536 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~G~~i~~- 1536 (1833)
++|+++|++++|+. +.+++++||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 3 ~~l~~~~l~~~~~~------~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~ 76 (251)
T PRK14251 3 NIISAKDVHLSYGN------YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGS 76 (251)
T ss_pred ceEEEEeeEEEECC------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccc
Confidence 36899999999953 469999999999999999999999999999999999997 489999999998753
Q ss_pred --ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCCh-hhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHHH
Q 000224 1537 --DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAE-YRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKRK 1609 (1833)
Q Consensus 1537 --~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~-~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgG~kqr 1609 (1833)
.....++.+||++|++.+++ .|++||+.+.....+... +..++.+.++++.+++. +..++++.+||||||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14251 77 KMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQR 155 (251)
T ss_pred cchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHH
Confidence 22345778999999998886 799999987655444432 23445677888999984 44688999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhH
Q 000224 1610 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1689 (1833)
Q Consensus 1610 l~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~ 1689 (1833)
++|||||+.+|++|||||||+|||+.+++.+++.|+++. + + +|||++||+++++..+||||++|++|++++.|++++
T Consensus 156 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~-~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14251 156 ICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK-H-Q-YTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEE 232 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH-c-C-CeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999984 3 3 589999999999999999999999999999999988
Q ss_pred HHh
Q 000224 1690 LKT 1692 (1833)
Q Consensus 1690 l~~ 1692 (1833)
+..
T Consensus 233 ~~~ 235 (251)
T PRK14251 233 MFI 235 (251)
T ss_pred HHh
Confidence 753
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=372.81 Aligned_cols=211 Identities=29% Similarity=0.462 Sum_probs=188.8
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-c---HHHhh
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-D---MDEIR 635 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~---~~~~r 635 (1833)
++++|+++.|+.+.+.+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. . ....+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 7899999999643223579999999999999999999999999999999999999999999999998742 1 22457
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCc
Q 000224 636 KGLGVCPQYDILFPELTVREHLEMFAVLK-GVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSK 714 (1833)
Q Consensus 636 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~ 714 (1833)
+.+||+||++.+++.+|+.||+.+..... +...++.++++.++++.+||.+..++.+.+||||||||++|||||+.+|+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~ 161 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPK 161 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 88999999999999999999999876554 34556667789999999999988899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEeeCCEE
Q 000224 715 VVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSL 771 (1833)
Q Consensus 715 vliLDEPtsgLD~~~r~~l~~~l~~~~--~g~tiil~tH~~~e~~~l~Dri~im~~G~l 771 (1833)
++||||||+|||+.+++.++++|++++ +++|||++||+++.. .+||+|++|++|++
T Consensus 162 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 162 LVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL-DVADRIVHMEDGKL 219 (220)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEEEEEECCEE
Confidence 999999999999999999999999985 389999999999865 68999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=382.02 Aligned_cols=220 Identities=25% Similarity=0.374 Sum_probs=195.0
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCC-----CcceEEEcCccCCc--c
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP-----TTGDALVFGKNITA--D 630 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~g~~i~~--~ 630 (1833)
..++++||+|.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .
T Consensus 20 ~~l~i~nl~~~~~~----~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~ 95 (276)
T PRK14271 20 PAMAAVNLTLGFAG----KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95 (276)
T ss_pred cEEEEeeEEEEECC----EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccch
Confidence 46899999999953 4699999999999999999999999999999999999986 79999999998753 2
Q ss_pred HHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCCc----ccccccCCCChhHHHHHHH
Q 000224 631 MDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKG-VKEELLESVVAEMVDEVGLAD----KVNIVVRALSGGMKRKLSL 705 (1833)
Q Consensus 631 ~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~-~~~~~~~~~v~~~l~~~~L~~----~~~~~~~~LSgGqkqrl~l 705 (1833)
....++.+||+||++.+|+ .|++||+.+.....+ .+..+.++++.++++.+|+.. ..++.+.+||||||||++|
T Consensus 96 ~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~L 174 (276)
T PRK14271 96 VLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCL 174 (276)
T ss_pred hHHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHH
Confidence 3456788999999999888 799999987654332 344555667788999999974 3578899999999999999
Q ss_pred HHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 706 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 706 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
||||+.+|++|||||||+|||+.+++.+.++|+++++++|||++||+++++..+|||+++|++|+++..|++.++.+
T Consensus 175 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 251 (276)
T PRK14271 175 ARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251 (276)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999998767899999999999999999999999999999999887754
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=389.27 Aligned_cols=222 Identities=26% Similarity=0.424 Sum_probs=195.8
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCC-----CCcceEEEcCccCCc---
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP-----PTTGDALVFGKNITA--- 629 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~g~~i~~--- 629 (1833)
..|+++|+++.|.+. .+.+|+|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|.++|.++..
T Consensus 79 ~~i~~~nls~~y~~~--~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 79 NVFEIRNFNFWYMNR--TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred ceEEEEeeEEEecCC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 479999999999642 3469999999999999999999999999999999999986 579999999999853
Q ss_pred cHHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHH
Q 000224 630 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEE-LLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLS 704 (1833)
Q Consensus 630 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~-~~~~~v~~~l~~~~L~----~~~~~~~~~LSgGqkqrl~ 704 (1833)
....+|+.+|||||++.+|+ .|++||+.|+....+...+ ..++.+.++++.++|. +..++.+.+||||||||++
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~ 235 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLC 235 (329)
T ss_pred chHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHH
Confidence 23456889999999999886 6999999986555444433 3345678889999874 3467889999999999999
Q ss_pred HHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 705 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 705 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
|||||+.+|+||||||||+|||+.+++.+++.|+++++++|||++||+++++..+||||++|++|++++.|++.++..
T Consensus 236 LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~ 313 (329)
T PRK14257 236 IARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFI 313 (329)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999999888999999999999999999999999999999999988753
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=332.58 Aligned_cols=216 Identities=26% Similarity=0.417 Sum_probs=201.5
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCC-------ccH
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT-------ADM 631 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~-------~~~ 631 (1833)
.|+++|+++.|+. ..+|-|++|+.++||.+.|+||+|||||||++.|.=+..|.+|+..|.|.... +..
T Consensus 2 sirv~~in~~yg~----~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i 77 (242)
T COG4161 2 SIQLNGINCFYGA----HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAI 77 (242)
T ss_pred ceEEccccccccc----chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHH
Confidence 4899999999954 46999999999999999999999999999999999999999999999886542 234
Q ss_pred HHhhcceEEEccCCCCCCCCCHHHHHH-HHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHh
Q 000224 632 DEIRKGLGVCPQYDILFPELTVREHLE-MFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALI 710 (1833)
Q Consensus 632 ~~~r~~ig~~~Q~~~l~~~lTv~e~l~-~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~ 710 (1833)
.+.|+++|+|+|.-.|||.+||.||+. -.++..|+++++.+.++.++|+++.|.++.|+.+-.|||||+|||+|||||+
T Consensus 78 ~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralm 157 (242)
T COG4161 78 RDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALM 157 (242)
T ss_pred HHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHh
Confidence 568899999999999999999999974 5677889999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHH
Q 000224 711 GDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSL 778 (1833)
Q Consensus 711 ~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~ 778 (1833)
.+|+||++||||++|||+-..++.++|+++.+ |.|-+++||..+.|...|.|++.|++|+|++.|+..
T Consensus 158 mkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 158 MEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred cCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchh
Confidence 99999999999999999999999999999975 999999999999999999999999999999999863
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=377.53 Aligned_cols=220 Identities=27% Similarity=0.438 Sum_probs=191.0
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-----ceEEEEcCeeCCC--
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT-----DGTAFIFGKDIRS-- 1536 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~-----~G~i~i~G~~i~~-- 1536 (1833)
+++++|++|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 77 (252)
T PRK14272 4 LLSAQDVNIYYGD------KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR 77 (252)
T ss_pred EEEEeeeEEEECC------EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCc
Confidence 6899999999952 46999999999999999999999999999999999999875 8999999998853
Q ss_pred -ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCC-hhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHHHH
Q 000224 1537 -DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVA-EYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKRKL 1610 (1833)
Q Consensus 1537 -~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~-~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgG~kqrl 1610 (1833)
.....++.+||+||++.+++.+|+.||+.+.....+.. .++..+.+.++++.+++. +..++++++||||||||+
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 157 (252)
T PRK14272 78 VDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRL 157 (252)
T ss_pred cCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHH
Confidence 23355778999999999999899999998755444432 233445566677777653 456889999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000224 1611 SVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690 (1833)
Q Consensus 1611 ~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l 1690 (1833)
+||+||+.+|++|||||||+|||+.+++.+.+.|++++ + + +|||++||+++++..+|||+++|++|++++.|+++++
T Consensus 158 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~-~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 158 CIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-K-V-TTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999985 3 4 6899999999999999999999999999999999887
Q ss_pred Hh
Q 000224 1691 KT 1692 (1833)
Q Consensus 1691 ~~ 1692 (1833)
..
T Consensus 235 ~~ 236 (252)
T PRK14272 235 FT 236 (252)
T ss_pred Hh
Confidence 54
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=374.79 Aligned_cols=206 Identities=25% Similarity=0.388 Sum_probs=181.0
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC----CceEEEEcCeeCCCChHHhccceEEEecCCC--CCCCC
Q 000224 1485 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP----TDGTAFIFGKDIRSDPKAARRLIGYCPQFDA--LLEYL 1558 (1833)
Q Consensus 1485 al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p----~~G~i~i~G~~i~~~~~~~~~~ig~~pQ~~~--l~~~l 1558 (1833)
+++|+||++++||++||+||||||||||+++|+|+++| ++|+|.++|+++... ...++.+||++|++. +++.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~-~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL-SIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh-hhhhheeEEEecCchhhcCccc
Confidence 57899999999999999999999999999999999999 899999999988542 223457999999974 55678
Q ss_pred CHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc---cccCCCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 000224 1559 TVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL---KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPI 1635 (1833)
Q Consensus 1559 Tv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~---~~~~~~~~~LSgG~kqrl~lA~al~~~p~vllLDEPTsgLD~~ 1635 (1833)
|+.||+.+.....+......++++.++++.+++. +..++++.+|||||||||+|||||+.+|+||||||||+|||+.
T Consensus 80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~ 159 (230)
T TIGR02770 80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVV 159 (230)
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence 9999997765544443344456788999999997 5678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1636 AKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1636 ~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
+++.+++.|++++++.| +|||++||+++++..+|||+++|++|++++.|+++++..
T Consensus 160 ~~~~l~~~l~~~~~~~~-~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 215 (230)
T TIGR02770 160 NQARVLKLLRELRQLFG-TGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFY 215 (230)
T ss_pred HHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999864334 689999999999999999999999999999999998864
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=370.27 Aligned_cols=200 Identities=26% Similarity=0.409 Sum_probs=180.0
Q ss_pred EEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc----c-HHHhhc
Q 000224 562 IRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA----D-MDEIRK 636 (1833)
Q Consensus 562 i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~----~-~~~~r~ 636 (1833)
++||++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . ....++
T Consensus 1 i~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 76 (206)
T TIGR03608 1 LKNISKKFGD----KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRRE 76 (206)
T ss_pred CcceEEEECC----EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHh
Confidence 4689999953 469999999999999999999999999999999999999999999999998642 1 223567
Q ss_pred ceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEE
Q 000224 637 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVV 716 (1833)
Q Consensus 637 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vl 716 (1833)
.+||++|++.+++.+|++||+.+.....+....+.+++++++++.+|+.+..++++.+||||||||++|||||+.+|++|
T Consensus 77 ~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~ll 156 (206)
T TIGR03608 77 KLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLI 156 (206)
T ss_pred CeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 89999999999999999999998766556666666778999999999998889999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEe
Q 000224 717 ILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIM 766 (1833)
Q Consensus 717 iLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im 766 (1833)
||||||+|||+.+++.++++|+++. +|+|||++||++++++ +||||++|
T Consensus 157 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~i~~l 206 (206)
T TIGR03608 157 LADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAK-QADRVIEL 206 (206)
T ss_pred EEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh-hcCEEEeC
Confidence 9999999999999999999999985 5899999999999875 79999876
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=381.69 Aligned_cols=219 Identities=27% Similarity=0.414 Sum_probs=192.6
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCC-----CCcceEEEcCccCCc---
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP-----PTTGDALVFGKNITA--- 629 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~g~~i~~--- 629 (1833)
+.|+++||++.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 9 ~~l~i~~v~~~~~~----~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 84 (264)
T PRK14243 9 TVLRTENLNVYYGS----FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV 84 (264)
T ss_pred eEEEEeeeEEEECC----EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccccc
Confidence 46999999999953 469999999999999999999999999999999999986 489999999998742
Q ss_pred cHHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHHH
Q 000224 630 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLSL 705 (1833)
Q Consensus 630 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~----~~~~~~~~~LSgGqkqrl~l 705 (1833)
.....++.+||++|++.+++. |+.||+.+.....+.. ...++++.++++.+++. +..++.+.+||||||||++|
T Consensus 85 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~l 162 (264)
T PRK14243 85 DPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCI 162 (264)
T ss_pred ChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHH
Confidence 334567889999999988874 9999998876544432 23456677888888874 34688899999999999999
Q ss_pred HHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEee---------CCEEEeecC
Q 000224 706 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMA---------NGSLKCCGS 776 (1833)
Q Consensus 706 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~---------~G~l~~~G~ 776 (1833)
||||+.+|++|||||||+|||+.++++++++|+++++++|||++||+++++..+||||++|+ +|++++.|+
T Consensus 163 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~ 242 (264)
T PRK14243 163 ARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDR 242 (264)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCC
Confidence 99999999999999999999999999999999999877899999999999999999999998 899999999
Q ss_pred HHHHHh
Q 000224 777 SLFLKH 782 (1833)
Q Consensus 777 ~~~Lk~ 782 (1833)
+.++.+
T Consensus 243 ~~~~~~ 248 (264)
T PRK14243 243 TEKIFN 248 (264)
T ss_pred HHHHHh
Confidence 988854
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=377.86 Aligned_cols=220 Identities=25% Similarity=0.405 Sum_probs=189.4
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHHhhcce
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGL 638 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~i 638 (1833)
|+++|+++.|+++ ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....++.+
T Consensus 1 i~~~~l~~~~~~~--~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (234)
T cd03251 1 VEFKNVTFRYPGD--GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQI 78 (234)
T ss_pred CEEEEEEEEeCCC--CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhE
Confidence 4689999999643 1359999999999999999999999999999999999999999999999988753 344567889
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCCcccccccCCCChhHHHHHHHHHHHhC
Q 000224 639 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLES-----VVAEMVDEV--GLADKVNIVVRALSGGMKRKLSLGIALIG 711 (1833)
Q Consensus 639 g~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~~~~~~LSgGqkqrl~lA~al~~ 711 (1833)
||+||++.+++ .|++||+.++... .......+ .+.+.++.+ ++.+..++++.+||||||||++|||||+.
T Consensus 79 ~~~~q~~~~~~-~tv~enl~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 155 (234)
T cd03251 79 GLVSQDVFLFN-DTVAENIAYGRPG--ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLK 155 (234)
T ss_pred EEeCCCCeecc-ccHHHHhhccCCC--CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhc
Confidence 99999998886 6999999875321 12222221 245566666 67777888899999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhC
Q 000224 712 DSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 785 (1833)
Q Consensus 712 ~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~~g 785 (1833)
+|+++||||||+|||+.+++.+++.|+++++++|||++||+++++.. |||+++|++|+++..|+++++...++
T Consensus 156 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~ 228 (234)
T cd03251 156 DPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEELLAQGG 228 (234)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEecCCeEeeeCCHHHHHHcCc
Confidence 99999999999999999999999999999888999999999999986 99999999999999999988876654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=336.93 Aligned_cols=214 Identities=25% Similarity=0.417 Sum_probs=199.1
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc----cHHHh
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA----DMDEI 634 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~----~~~~~ 634 (1833)
.|++++++|..+...+...+|++|+|.|++||-++|+||+|||||||+-+|+|+..|++|+|.+.|++..+ .....
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 68999999999887788899999999999999999999999999999999999999999999999998853 23334
Q ss_pred h-cceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCC
Q 000224 635 R-KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDS 713 (1833)
Q Consensus 635 r-~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p 713 (1833)
| +++|+|+|...|.|+||..||+...+.++|-...+..+.+.++|+.+||.+..+.++++||||+||||+||||++..|
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P 165 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRP 165 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCC
Confidence 4 789999999999999999999999999999766777888999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEe
Q 000224 714 KVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKC 773 (1833)
Q Consensus 714 ~vliLDEPtsgLD~~~r~~l~~~l~~~~--~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~ 773 (1833)
+||+-||||-+||..+-+++-+++-.+. .|.|.|++|||...|.+ |||++-|++|+|+.
T Consensus 166 ~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l~~ 226 (228)
T COG4181 166 DVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGRLVE 226 (228)
T ss_pred CEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeecceecc
Confidence 9999999999999999999999998874 48999999999999986 99999999999874
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=380.22 Aligned_cols=228 Identities=25% Similarity=0.353 Sum_probs=194.9
Q ss_pred eEEEEeEEEEcCCCc---cccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-h-
Q 000224 1464 IIYLRNLRKVYPGGK---RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-P- 1538 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~---~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~-~- 1538 (1833)
+|+++||+|.|+.+. ...++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... .
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 689999999996310 00135699999999999999999999999999999999999999999999999987542 2
Q ss_pred --HHhccceEEEecCC--CCCCCCCHHHHHHHHHH-HcCCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHHHH
Q 000224 1539 --KAARRLIGYCPQFD--ALLEYLTVQEHLELYAR-IKGVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSV 1612 (1833)
Q Consensus 1539 --~~~~~~ig~~pQ~~--~l~~~lTv~e~l~~~~~-~~g~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~kqrl~l 1612 (1833)
...++.+||+||++ .+++..|+.|++.+... ..+....+..+.+.++++.+++. ...++++.+||||||||++|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~l 162 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCL 162 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHH
Confidence 24577899999997 46677899999876433 22344444455688999999996 57899999999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1613 AIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1613 A~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
|+||+.+|++|||||||+|||+.+++.+.+.|++++++.+ +|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 163 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~-~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 241 (268)
T PRK10419 163 ARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFG-TACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLT 241 (268)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcC-cEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhccC
Confidence 9999999999999999999999999999999999864434 689999999999999999999999999999999888653
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=372.94 Aligned_cols=216 Identities=27% Similarity=0.420 Sum_probs=187.3
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC---CCceEEEEcCeeCCCChHH
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY---PTDGTAFIFGKDIRSDPKA 1540 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~---p~~G~i~i~G~~i~~~~~~ 1540 (1833)
.+.++|++++|++.+ +.+.+++|+||++++||++||+||||||||||+++|+|+++ |++|+|.++|.++. ...
T Consensus 3 ~~~~~~~~~~~~~~~--~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~--~~~ 78 (226)
T cd03234 3 VLPWWDVGLKAKNWN--KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK--PDQ 78 (226)
T ss_pred cceeecceeeeecCc--cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC--hHH
Confidence 467999999997421 13679999999999999999999999999999999999999 99999999999875 235
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHHHcCC---ChhhHHHHHHH-HHHHcCCccccCCCCCCCChhHHHHHHHHHHH
Q 000224 1541 ARRLIGYCPQFDALLEYLTVQEHLELYARIKGV---AEYRMDDVVME-KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAM 1616 (1833)
Q Consensus 1541 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~---~~~~~~~~~~~-~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al 1616 (1833)
.++++||+||++.+++.+|++||+.+.....+. ......+.+.+ .++.+++.+..++.+++|||||||||+|||||
T Consensus 79 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred hcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHH
Confidence 678899999999999999999999886554321 11222234455 78899998888999999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCH-HHHHHHcCEEEEEECCEEEEec
Q 000224 1617 IGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSM-NEAQALCTRIGIMVGGQLRCIG 1685 (1833)
Q Consensus 1617 ~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~-~e~~~l~drv~im~~G~i~~~g 1685 (1833)
+.+|++|||||||+|||+.+++.+++.|+++++ +| .|||++||++ +++..+|||+++|++|++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~-~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RN-RIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CC-CEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999863 44 5899999999 6999999999999999998765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=418.24 Aligned_cols=128 Identities=28% Similarity=0.468 Sum_probs=112.5
Q ss_pred CCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCcc-ccCCCCCCCChhHHHHHHHHHHHhcCC---CEEEEeCCCCCC
Q 000224 1557 YLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK-HAKKPSFTLSGGNKRKLSVAIAMIGDP---PIVILDEPSTGM 1632 (1833)
Q Consensus 1557 ~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgG~kqrl~lA~al~~~p---~vllLDEPTsgL 1632 (1833)
+||+.|++.++..++++ ....+.++.+||.. ..++++.+||||||||+.||++|+.+| +++||||||+||
T Consensus 791 ~ltv~E~l~~f~~~~~i------~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGL 864 (943)
T PRK00349 791 DMTVEEALEFFEAIPKI------ARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGL 864 (943)
T ss_pred cCcHHHHHHHHHhchhh------hHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCC
Confidence 37999999998765432 23357899999975 578999999999999999999999999 999999999999
Q ss_pred CHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEE------ECCEEEEecChhHHHhh
Q 000224 1633 DPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIM------VGGQLRCIGSPQHLKTR 1693 (1833)
Q Consensus 1633 D~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im------~~G~i~~~g~~~~l~~~ 1693 (1833)
|+..++.+++.|+++. ++| .|||++||++++++ .||+|++| .+|++++.|+++++.+.
T Consensus 865 D~~~~~~L~~~L~~l~-~~G-~TVIiitH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~ 928 (943)
T PRK00349 865 HFEDIRKLLEVLHRLV-DKG-NTVVVIEHNLDVIK-TADWIIDLGPEGGDGGGEIVATGTPEEVAKV 928 (943)
T ss_pred CHHHHHHHHHHHHHHH-hCC-CEEEEEecCHHHHH-hCCEEEEecCCcCCCCCEEEEeCCHHHHHhC
Confidence 9999999999999986 345 58999999999986 69999999 79999999999998753
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-39 Score=379.74 Aligned_cols=221 Identities=26% Similarity=0.420 Sum_probs=192.5
Q ss_pred cceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEEcCeeCCC
Q 000224 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY-----PTDGTAFIFGKDIRS 1536 (1833)
Q Consensus 1462 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~G~~i~~ 1536 (1833)
..+++++|+++.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 23 ~~~l~~~nl~~~~~~------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~ 96 (272)
T PRK14236 23 QTALEVRNLNLFYGD------KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYD 96 (272)
T ss_pred CcEEEEEEEEEEECC------eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcc
Confidence 347999999999953 458999999999999999999999999999999999988 489999999999853
Q ss_pred ---ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCCh-hhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHH
Q 000224 1537 ---DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAE-YRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKR 1608 (1833)
Q Consensus 1537 ---~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~-~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgG~kq 1608 (1833)
.....++.+||+||++.+++. |++||+.+.....+... ...++.+.++++.+++. +..++++.+|||||||
T Consensus 97 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 175 (272)
T PRK14236 97 KKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQ 175 (272)
T ss_pred cccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHH
Confidence 233567889999999988885 99999987655555322 23345677888888885 3568899999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChh
Q 000224 1609 KLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1688 (1833)
Q Consensus 1609 rl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~ 1688 (1833)
|++|||||+.+|++|||||||+|||+.+++.+++.|++++ + + .|||++||+++++..+|||+++|++|++++.|+++
T Consensus 176 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~-~-~-~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 176 RLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELK-S-K-YTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-h-C-CeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 9999999999999999999999999999999999999985 3 4 58999999999999999999999999999999988
Q ss_pred HHHh
Q 000224 1689 HLKT 1692 (1833)
Q Consensus 1689 ~l~~ 1692 (1833)
++..
T Consensus 253 ~~~~ 256 (272)
T PRK14236 253 TLFT 256 (272)
T ss_pred HHhc
Confidence 8753
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=377.60 Aligned_cols=220 Identities=29% Similarity=0.454 Sum_probs=192.8
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCC--C---CcceEEEcCccCCc---
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP--P---TTGDALVFGKNITA--- 629 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~--p---~~G~i~i~g~~i~~--- 629 (1833)
..|+++||+|.|+. +.+++|+||++.+||+++|+|+||||||||+++|+|+.+ | ++|+|.++|.++..
T Consensus 4 ~~l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 79 (252)
T PRK14255 4 KIITSSDVHLFYGK----FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNE 79 (252)
T ss_pred ceEEEEeEEEEECC----eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccc
Confidence 46899999999953 469999999999999999999999999999999999975 5 59999999998742
Q ss_pred cHHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHH
Q 000224 630 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK-EELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLS 704 (1833)
Q Consensus 630 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~v~~~l~~~~L~----~~~~~~~~~LSgGqkqrl~ 704 (1833)
+....++.+||+||++.+++ .|++||+.+.....+.. .+..++++.+.++.+++. +..++.+.+||||||||++
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~ 158 (252)
T PRK14255 80 DVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVC 158 (252)
T ss_pred cHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHH
Confidence 23456778999999998888 69999998876555543 333456778888888764 4568889999999999999
Q ss_pred HHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 705 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 705 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
|||||+.+|++|||||||+|||+.+++.+.++|+++++++|||++||+++++..+||||++|++|+++..|++.++..
T Consensus 159 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14255 159 IARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFL 236 (252)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999999777899999999999999999999999999999998876643
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=376.72 Aligned_cols=219 Identities=25% Similarity=0.419 Sum_probs=190.8
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEEcCeeCCC--
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP-----TDGTAFIFGKDIRS-- 1536 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~G~~i~~-- 1536 (1833)
+++++|++|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~ 76 (249)
T PRK14253 3 KFNIENLDLFYGE------NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNI 76 (249)
T ss_pred eEEEeccEEEECC------eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccccc
Confidence 5899999999952 4599999999999999999999999999999999999986 59999999998842
Q ss_pred ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCC-hhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHHHHH
Q 000224 1537 DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVA-EYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKRKLS 1611 (1833)
Q Consensus 1537 ~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~-~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgG~kqrl~ 1611 (1833)
.....++.+||+||++.+++ .|+.||+.+.....+.. ....++++.+.++.+++. +..++++.+|||||||||+
T Consensus 77 ~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 155 (249)
T PRK14253 77 DVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLC 155 (249)
T ss_pred chHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHH
Confidence 34456778999999998887 89999998765444432 233445677788888874 3567899999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHH
Q 000224 1612 VAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1691 (1833)
Q Consensus 1612 lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~ 1691 (1833)
|||||+.+|++|||||||+|||+.+++.+++.|++++ + + +|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 156 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~-~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 156 IARTIAMEPDVILMDEPTSALDPIATHKIEELMEELK-K-N-YTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-C-CeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999985 3 3 58999999999999999999999999999999988775
Q ss_pred h
Q 000224 1692 T 1692 (1833)
Q Consensus 1692 ~ 1692 (1833)
+
T Consensus 233 ~ 233 (249)
T PRK14253 233 S 233 (249)
T ss_pred c
Confidence 3
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=370.52 Aligned_cols=214 Identities=27% Similarity=0.455 Sum_probs=187.2
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-h---H
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-P---K 1539 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~-~---~ 1539 (1833)
+++++|+++.|+++. +.+.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++... . .
T Consensus 1 ~l~~~~l~~~~~~~~--~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (220)
T TIGR02982 1 VISIRNLNHYYGHGS--LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELV 78 (220)
T ss_pred CEEEEEEEEEccCCC--cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHH
Confidence 378999999996421 125699999999999999999999999999999999999999999999999988532 1 2
Q ss_pred HhccceEEEecCCCCCCCCCHHHHHHHHHHHcC-CChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhc
Q 000224 1540 AARRLIGYCPQFDALLEYLTVQEHLELYARIKG-VAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIG 1618 (1833)
Q Consensus 1540 ~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~ 1618 (1833)
..++.+||+||++.+++.+|+.||+.+.....+ ...++..+.+.++++.+++.+..++++.+||||||||++|||||+.
T Consensus 79 ~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~ 158 (220)
T TIGR02982 79 QLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVH 158 (220)
T ss_pred HHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 356789999999999988999999998765542 3444556678899999999988999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEE
Q 000224 1619 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681 (1833)
Q Consensus 1619 ~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i 1681 (1833)
+|++|||||||+|||+.+++.+++.|+++.++.+ +|||++||+++. ..+||||++|++|++
T Consensus 159 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sh~~~~-~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 159 RPKLVLADEPTAALDSKSGRDVVELMQKLAREQG-CTILIVTHDNRI-LDVADRIVHMEDGKL 219 (220)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHH-HhhCCEEEEEECCEE
Confidence 9999999999999999999999999999864344 689999999985 569999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=380.47 Aligned_cols=223 Identities=19% Similarity=0.380 Sum_probs=191.8
Q ss_pred CCcceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEEcCeeC
Q 000224 1460 VDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY-----PTDGTAFIFGKDI 1534 (1833)
Q Consensus 1460 ~~~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~G~~i 1534 (1833)
++.++++++|+++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++
T Consensus 20 ~~~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~ 93 (271)
T PRK14238 20 PKKVVFDTQNLNLWYGE------DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNI 93 (271)
T ss_pred CCceEEEEeeeEEEECC------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEc
Confidence 34568999999999953 458999999999999999999999999999999999997 6999999999988
Q ss_pred CC---ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCCh-hhHHHHHHHHHHHcCC----ccccCCCCCCCChhH
Q 000224 1535 RS---DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAE-YRMDDVVMEKLVEFDL----LKHAKKPSFTLSGGN 1606 (1833)
Q Consensus 1535 ~~---~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~-~~~~~~~~~~l~~~~L----~~~~~~~~~~LSgG~ 1606 (1833)
.. .....++.+||+||++.+++ .|++||+.+.....+... ...++.+.+.++.+++ .+..++++.+|||||
T Consensus 94 ~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe 172 (271)
T PRK14238 94 FDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQ 172 (271)
T ss_pred ccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHH
Confidence 42 23455778999999998887 599999987654444332 2234456677777753 445788999999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecC
Q 000224 1607 KRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS 1686 (1833)
Q Consensus 1607 kqrl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~ 1686 (1833)
|||++||+||+.+|++|||||||+|||+.+++.+.+.|++++ + + +|||++||+++++..+|||+++|++|+++..|+
T Consensus 173 ~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~-~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~ 249 (271)
T PRK14238 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELK-K-D-YSIIIVTHNMQQAARISDKTAFFLNGYVNEYDD 249 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH-c-C-CEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999985 3 4 589999999999999999999999999999999
Q ss_pred hhHHHh
Q 000224 1687 PQHLKT 1692 (1833)
Q Consensus 1687 ~~~l~~ 1692 (1833)
++++.+
T Consensus 250 ~~~~~~ 255 (271)
T PRK14238 250 TDKIFS 255 (271)
T ss_pred HHHHHc
Confidence 988754
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=377.45 Aligned_cols=223 Identities=23% Similarity=0.375 Sum_probs=189.3
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCee-----CCC-
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKD-----IRS- 1536 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~-----i~~- 1536 (1833)
++|+++|+++.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +..
T Consensus 2 ~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 75 (253)
T TIGR02323 2 PLLQVSGLSKSYGG------GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQL 75 (253)
T ss_pred ceEEEeeeEEEeCC------ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccC
Confidence 47899999999953 458999999999999999999999999999999999999999999999977 543
Q ss_pred ChHH----hccceEEEecCCC--CCCCCCHHHHHHHHHHHcC-CChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHH
Q 000224 1537 DPKA----ARRLIGYCPQFDA--LLEYLTVQEHLELYARIKG-VAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKR 1608 (1833)
Q Consensus 1537 ~~~~----~~~~ig~~pQ~~~--l~~~lTv~e~l~~~~~~~g-~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~kq 1608 (1833)
.... .++.+||++|++. +++.+|+.||+.......+ ......++.+.++++.+++. ...++++.+|||||||
T Consensus 76 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~q 155 (253)
T TIGR02323 76 SEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQ 155 (253)
T ss_pred CHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHH
Confidence 2221 2457999999974 4456789999865322111 11223346678899999997 4789999999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChh
Q 000224 1609 KLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1688 (1833)
Q Consensus 1609 rl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~ 1688 (1833)
||+|||||+.+|++|||||||+|||+.+++.+++.|+++.++.| .|||++||+++++..+|||+++|++|+++..|+++
T Consensus 156 rv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~-~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~ 234 (253)
T TIGR02323 156 RLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLG-LAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTD 234 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999864434 68999999999999999999999999999999988
Q ss_pred HHHh
Q 000224 1689 HLKT 1692 (1833)
Q Consensus 1689 ~l~~ 1692 (1833)
++.+
T Consensus 235 ~~~~ 238 (253)
T TIGR02323 235 QVLD 238 (253)
T ss_pred HHhc
Confidence 8764
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=382.11 Aligned_cols=217 Identities=24% Similarity=0.319 Sum_probs=190.6
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCC--------cceEEEcCccCCc-c
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPT--------TGDALVFGKNITA-D 630 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~--------~G~i~i~g~~i~~-~ 630 (1833)
|+++||++.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. .
T Consensus 2 l~~~nl~~~~~~----~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~ 77 (272)
T PRK13547 2 LTADHLHVARRH----RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAID 77 (272)
T ss_pred eEEEEEEEEECC----EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCC
Confidence 789999999943 46999999999999999999999999999999999999998 9999999998753 3
Q ss_pred HHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHH
Q 000224 631 MDEIRKGLGVCPQYDILFPELTVREHLEMFAVLK----GVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLG 706 (1833)
Q Consensus 631 ~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~----~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA 706 (1833)
....++.+||+||++.+++.+|++||+.+..... +....+.++++.++++.+|+.+..++++.+||||||||++||
T Consensus 78 ~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 157 (272)
T PRK13547 78 APRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFA 157 (272)
T ss_pred HHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHH
Confidence 4455667999999987666689999998753211 111233456788999999999888999999999999999999
Q ss_pred HHHh---------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeec
Q 000224 707 IALI---------GDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 775 (1833)
Q Consensus 707 ~al~---------~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G 775 (1833)
|||+ .+|++|||||||+|||+.+++.++++|++++ + |+|||++||+++++..+|||+++|++|+++..|
T Consensus 158 ral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g 237 (272)
T PRK13547 158 RVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHG 237 (272)
T ss_pred HHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEec
Confidence 9999 5999999999999999999999999999985 3 899999999999999999999999999999999
Q ss_pred CHHHH
Q 000224 776 SSLFL 780 (1833)
Q Consensus 776 ~~~~L 780 (1833)
++.++
T Consensus 238 ~~~~~ 242 (272)
T PRK13547 238 APADV 242 (272)
T ss_pred CHHHH
Confidence 87665
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-39 Score=376.06 Aligned_cols=221 Identities=22% Similarity=0.405 Sum_probs=192.1
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-----ceEEEEcCeeCCC-
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT-----DGTAFIFGKDIRS- 1536 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~-----~G~i~i~G~~i~~- 1536 (1833)
++++++|++|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.++|.++..
T Consensus 3 ~~l~~~~l~~~~~~------~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~ 76 (251)
T PRK14249 3 PKIKIRGVNFFYHK------HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSP 76 (251)
T ss_pred ceEEEEEEEEEECC------eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccc
Confidence 46899999999953 45999999999999999999999999999999999999997 6999999998753
Q ss_pred --ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCCh-hhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHHH
Q 000224 1537 --DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAE-YRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKRK 1609 (1833)
Q Consensus 1537 --~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~-~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgG~kqr 1609 (1833)
.....++.+||+||++.+++. |++||+.+....++... +..++.+.+.++.+++. +..++++.+||||||||
T Consensus 77 ~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14249 77 NLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQR 155 (251)
T ss_pred ccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHH
Confidence 233567889999999988874 99999987655544432 23345567778888864 45789999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhH
Q 000224 1610 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1689 (1833)
Q Consensus 1610 l~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~ 1689 (1833)
++|||||+.+|++|||||||+|||+.+++.++++|+++. + + +|||++||+++++..+|||+++|++|++++.|++++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~-~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14249 156 LCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-Q-N-YTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGE 232 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-C-CEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 999999999999999999999999999999999999984 3 4 589999999999999999999999999999999988
Q ss_pred HHhh
Q 000224 1690 LKTR 1693 (1833)
Q Consensus 1690 l~~~ 1693 (1833)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14249 233 IFSR 236 (251)
T ss_pred HHhC
Confidence 8653
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=417.13 Aligned_cols=220 Identities=24% Similarity=0.410 Sum_probs=194.2
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-hHH-
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-PKA- 1540 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~~- 1540 (1833)
++|+++|++|+|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++... ...
T Consensus 3 ~~i~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~ 76 (501)
T PRK10762 3 ALLQLKGIDKAFPG------VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSS 76 (501)
T ss_pred ceEEEeeeEEEeCC------eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHH
Confidence 47999999999952 4699999999999999999999999999999999999999999999999998542 222
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHHHc---C-CChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHH
Q 000224 1541 ARRLIGYCPQFDALLEYLTVQEHLELYARIK---G-VAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAM 1616 (1833)
Q Consensus 1541 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~---g-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al 1616 (1833)
.++++||+||++.+++.+||+||+.+....+ + .+..+.++++.++++.+++.+..++++++|||||||||+||+||
T Consensus 77 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 156 (501)
T PRK10762 77 QEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVL 156 (501)
T ss_pred HhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHH
Confidence 3567999999999999999999998754322 1 22333456678899999999888999999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000224 1617 IGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690 (1833)
Q Consensus 1617 ~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l 1690 (1833)
+.+|++|||||||+|||+.+++.+++.|+++++ +| +|||++|||+++++.+||||++|++|++++.|+++++
T Consensus 157 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~-~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 157 SFESKVIIMDEPTDALTDTETESLFRVIRELKS-QG-RGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred hcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 999999999999999999999999999999863 44 6899999999999999999999999999999987654
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=422.97 Aligned_cols=225 Identities=24% Similarity=0.365 Sum_probs=199.9
Q ss_pred ceEEEEeeEEEecCCC-------CcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCcc
Q 000224 558 RCIQIRKLHKVYATKR-------GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD 630 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~-------~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~ 630 (1833)
..++++||+|.|+.++ +.+.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~ 391 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL 391 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC
Confidence 4799999999996321 124699999999999999999999999999999999999999999999999988531
Q ss_pred ----HHHhhcceEEEccCC--CCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCC-cccccccCCCChhHHHH
Q 000224 631 ----MDEIRKGLGVCPQYD--ILFPELTVREHLEMFAVLKGV-KEELLESVVAEMVDEVGLA-DKVNIVVRALSGGMKRK 702 (1833)
Q Consensus 631 ----~~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSgGqkqr 702 (1833)
....|++|||+||++ .+++.+||.||+.+.....+. ...+.++++.++|+.+||. +..++++++||||||||
T Consensus 392 ~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQR 471 (623)
T PRK10261 392 SPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQR 471 (623)
T ss_pred CHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHH
Confidence 233567899999997 589999999999886655554 3445667899999999996 57899999999999999
Q ss_pred HHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q 000224 703 LSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFL 780 (1833)
Q Consensus 703 l~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~L 780 (1833)
|+|||||+.+|++|||||||+|||+.++++++++|++++ + |.|||++|||++++..+||||++|++|++++.|++.++
T Consensus 472 v~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i 551 (623)
T PRK10261 472 ICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAV 551 (623)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999999985 3 89999999999999999999999999999999999887
Q ss_pred Hh
Q 000224 781 KH 782 (1833)
Q Consensus 781 k~ 782 (1833)
..
T Consensus 552 ~~ 553 (623)
T PRK10261 552 FE 553 (623)
T ss_pred hc
Confidence 54
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=376.81 Aligned_cols=220 Identities=26% Similarity=0.416 Sum_probs=191.7
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC--C---CceEEEEcCeeCCCC
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY--P---TDGTAFIFGKDIRSD 1537 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~--p---~~G~i~i~G~~i~~~ 1537 (1833)
++|+++|+++.|++ +.+++|+||++++||++||+||||||||||+++|+|+.+ | ++|+|.++|+++...
T Consensus 5 ~~i~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 78 (253)
T PRK14261 5 IILSTKNLNLWYGE------KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDS 78 (253)
T ss_pred ceEEEeeeEEEECC------eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccc
Confidence 57999999999953 469999999999999999999999999999999999976 3 489999999998642
Q ss_pred ---hHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCC-hhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHHH
Q 000224 1538 ---PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVA-EYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKRK 1609 (1833)
Q Consensus 1538 ---~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~-~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgG~kqr 1609 (1833)
....++.+||+||++.+++ .|++||+.+....++.. ....++.+.++++.+++. +..++++.+||||||||
T Consensus 79 ~~~~~~~~~~i~~~~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 157 (253)
T PRK14261 79 GADVVALRRKIGMVFQRPNPFP-KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQR 157 (253)
T ss_pred ccchhhhhceEEEEecCCccCc-ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHH
Confidence 3456778999999998887 49999999876655532 233455677888888874 34689999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhH
Q 000224 1610 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1689 (1833)
Q Consensus 1610 l~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~ 1689 (1833)
++|||||+.+|+++||||||+|||+.+++.+++.|++++ + + +|||++||+++++..+|||+++|++|++++.|++++
T Consensus 158 v~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~-~-~-~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14261 158 LCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLK-K-E-YTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQ 234 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-h-C-ceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHH
Confidence 999999999999999999999999999999999999985 3 3 589999999999999999999999999999999988
Q ss_pred HHh
Q 000224 1690 LKT 1692 (1833)
Q Consensus 1690 l~~ 1692 (1833)
+.+
T Consensus 235 ~~~ 237 (253)
T PRK14261 235 IFE 237 (253)
T ss_pred HHh
Confidence 764
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=334.82 Aligned_cols=216 Identities=25% Similarity=0.389 Sum_probs=197.2
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCCh----H
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDP----K 1539 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~----~ 1539 (1833)
+|++++++|.-+.+. +...+|++|+|.|++||.+||+||+|||||||+-+++|+..|++|+|++.|+++.+-. .
T Consensus 6 ii~~~~l~ktvg~~~--~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA 83 (228)
T COG4181 6 IIEVHHLSKTVGQGE--GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARA 83 (228)
T ss_pred eeehhhhhhhhcCCC--cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHH
Confidence 789999999987653 4677999999999999999999999999999999999999999999999999986522 1
Q ss_pred Hh-ccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhc
Q 000224 1540 AA-RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIG 1618 (1833)
Q Consensus 1540 ~~-~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~ 1618 (1833)
.+ .+++|+|+|...|.|+||..||+.....++|-...+..+.+.++|+++||.+..+.++.+||||+||||+||||++.
T Consensus 84 ~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~ 163 (228)
T COG4181 84 ALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAG 163 (228)
T ss_pred HhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcC
Confidence 22 36899999999999999999999999999986666667778899999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEE
Q 000224 1619 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRC 1683 (1833)
Q Consensus 1619 ~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~ 1683 (1833)
.|+|||-||||-+||-.+-+.+.+++-.++++.| +|.|++|||...+.+ |+|++-|.+|+++.
T Consensus 164 ~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G-~TlVlVTHD~~LA~R-c~R~~r~~~G~l~~ 226 (228)
T COG4181 164 RPDVLFADEPTGNLDRATGDKIADLLFALNRERG-TTLVLVTHDPQLAAR-CDRQLRLRSGRLVE 226 (228)
T ss_pred CCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcC-ceEEEEeCCHHHHHh-hhheeeeecceecc
Confidence 9999999999999999999999999999987665 799999999988776 99999999999975
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=377.88 Aligned_cols=219 Identities=23% Similarity=0.416 Sum_probs=194.3
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCC-----cceEEEcCccCCc---c
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPT-----TGDALVFGKNITA---D 630 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~-----~G~i~i~g~~i~~---~ 630 (1833)
.|+++|+++.|++ ..+++|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. .
T Consensus 7 ~l~~~nl~~~~~~----~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 7 AIKVNNLSFYYDT----QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred eEEEeeEEEEeCC----eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 6999999999953 35999999999999999999999999999999999999996 8999999988742 2
Q ss_pred HHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCCc----ccccccCCCChhHHHHHHH
Q 000224 631 MDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV-KEELLESVVAEMVDEVGLAD----KVNIVVRALSGGMKRKLSL 705 (1833)
Q Consensus 631 ~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~v~~~l~~~~L~~----~~~~~~~~LSgGqkqrl~l 705 (1833)
...+++.++|+||++.+++ +|++||+.+.....+. +..+.++++.++++.+++.+ ..++.+.+||||||||++|
T Consensus 83 ~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~l 161 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCI 161 (261)
T ss_pred hHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHH
Confidence 3456788999999998888 8999999887655554 33445567889999999853 5688899999999999999
Q ss_pred HHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEeeC-----CEEEeecCHH
Q 000224 706 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMAN-----GSLKCCGSSL 778 (1833)
Q Consensus 706 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~--~g~tiil~tH~~~e~~~l~Dri~im~~-----G~l~~~G~~~ 778 (1833)
||||+.+|++|||||||+|||+.+++.+++.|++++ +|+|||++||+++++..+||||++|++ |+++..|++.
T Consensus 162 aral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~ 241 (261)
T PRK14258 162 ARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTK 241 (261)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCCHH
Confidence 999999999999999999999999999999999974 489999999999999999999999999 9999999998
Q ss_pred HHHh
Q 000224 779 FLKH 782 (1833)
Q Consensus 779 ~Lk~ 782 (1833)
++..
T Consensus 242 ~~~~ 245 (261)
T PRK14258 242 KIFN 245 (261)
T ss_pred HHHh
Confidence 8743
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=364.54 Aligned_cols=197 Identities=20% Similarity=0.281 Sum_probs=172.1
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC---CCceEEEEcCeeCCCChHH
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY---PTDGTAFIFGKDIRSDPKA 1540 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~---p~~G~i~i~G~~i~~~~~~ 1540 (1833)
.+.++|++|.|+.+. +++.+++++||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++......
T Consensus 3 ~~~~~~~~~~~~~~~--~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~ 80 (202)
T cd03233 3 TLSWRNISFTTGKGR--SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEK 80 (202)
T ss_pred eEEEEccEEEeccCC--CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhh
Confidence 478999999998642 35679999999999999999999999999999999999999 8999999999998654445
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCC
Q 000224 1541 ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDP 1620 (1833)
Q Consensus 1541 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p 1620 (1833)
.++.+||+||++.+++.+|++||+.+..... .++++..||||||||++||+||+.+|
T Consensus 81 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----------------------~~~~~~~LS~Ge~qrl~laral~~~p 137 (202)
T cd03233 81 YPGEIIYVSEEDVHFPTLTVRETLDFALRCK-----------------------GNEFVRGISGGERKRVSIAEALVSRA 137 (202)
T ss_pred hcceEEEEecccccCCCCcHHHHHhhhhhhc-----------------------cccchhhCCHHHHHHHHHHHHHhhCC
Confidence 6778999999998999899999997653211 56788999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEec
Q 000224 1621 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1685 (1833)
Q Consensus 1621 ~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g 1685 (1833)
++|||||||+|||+.+++.+++.|++++++.+.++||+++|+++++..+|||+++|++|+++..|
T Consensus 138 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 138 SVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999865434334555667789999999999999999998654
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=374.35 Aligned_cols=204 Identities=27% Similarity=0.420 Sum_probs=182.1
Q ss_pred ceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCC----CcceEEEcCccCCccHHHhhcceEEEccCCC--CCCCC
Q 000224 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP----TTGDALVFGKNITADMDEIRKGLGVCPQYDI--LFPEL 651 (1833)
Q Consensus 578 al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p----~~G~i~i~g~~i~~~~~~~r~~ig~~~Q~~~--l~~~l 651 (1833)
+++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... +..++.+||++|++. +++.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~-~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL-SIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh-hhhhheeEEEecCchhhcCccc
Confidence 57999999999999999999999999999999999999 899999999987532 233468999999984 55678
Q ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC---cccccccCCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCCHH
Q 000224 652 TVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA---DKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPY 728 (1833)
Q Consensus 652 Tv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~---~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLDEPtsgLD~~ 728 (1833)
|+.||+.+.....+......++++.++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.
T Consensus 80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~ 159 (230)
T TIGR02770 80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVV 159 (230)
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence 9999998766554544445567899999999998 5678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 729 SMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 729 ~r~~l~~~l~~~~--~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
+++.+++.|++++ .|+|||++||+++++..+|||+++|++|++++.|++.++..
T Consensus 160 ~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 215 (230)
T TIGR02770 160 NQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFY 215 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999985 38999999999999999999999999999999999988754
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=377.41 Aligned_cols=220 Identities=23% Similarity=0.395 Sum_probs=191.3
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEEcCeeCCC-
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP-----TDGTAFIFGKDIRS- 1536 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~G~~i~~- 1536 (1833)
.+++++|++|.|++ +.+++|+||+|++||++||+|+||||||||+|+|+|+++| ++|+|.++|+++..
T Consensus 6 ~~l~~~~l~~~~~~------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 79 (259)
T PRK14260 6 PAIKVKDLSFYYNT------SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDP 79 (259)
T ss_pred ceEEEEEEEEEECC------eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccc
Confidence 36899999999953 4599999999999999999999999999999999999985 58999999998753
Q ss_pred --ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcC-CChhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHHH
Q 000224 1537 --DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKG-VAEYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKRK 1609 (1833)
Q Consensus 1537 --~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g-~~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgG~kqr 1609 (1833)
.....++++||+||++.+++ +|++||+.+....++ .++.+..+.+.++++.+++. +..++++.+||||||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 158 (259)
T PRK14260 80 RININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQR 158 (259)
T ss_pred ccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHH
Confidence 22455678999999998887 899999987654443 23334455677888888873 46788999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEE-----CCEEEEe
Q 000224 1610 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMV-----GGQLRCI 1684 (1833)
Q Consensus 1610 l~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~-----~G~i~~~ 1684 (1833)
++|||||+.+|++|||||||+|||+.+++.+++.|++++ + + .|||++||+++++..+|||+++|+ +|++++.
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~-~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 159 LCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLR-S-E-LTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-C-CEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 999999999999999999999999999999999999985 3 3 589999999999999999999998 5999999
Q ss_pred cChhHHHh
Q 000224 1685 GSPQHLKT 1692 (1833)
Q Consensus 1685 g~~~~l~~ 1692 (1833)
|+++++.+
T Consensus 236 ~~~~~~~~ 243 (259)
T PRK14260 236 GVTTQIFS 243 (259)
T ss_pred CCHHHHhc
Confidence 99998754
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=374.30 Aligned_cols=200 Identities=28% Similarity=0.430 Sum_probs=176.9
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccceEEEecCCCCCCCCCHHHHHH
Q 000224 1486 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLE 1565 (1833)
Q Consensus 1486 l~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~ 1565 (1833)
++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..... ..+|+||++.+++.+|++||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~----~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP----DRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh----hheEEecCcccCCCCCHHHHHH
Confidence 578999999999999999999999999999999999999999999998864221 2589999999999999999998
Q ss_pred HHHH--HcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q 000224 1566 LYAR--IKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEV 1643 (1833)
Q Consensus 1566 ~~~~--~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~ 1643 (1833)
+... ..+....+.++.+.++++.+++.+..++++.+||||||||++||+||+.+|++|||||||+|||+.+++.+++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~ 156 (230)
T TIGR01184 77 LAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEE 156 (230)
T ss_pred HHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence 7532 22344444556678899999999888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000224 1644 ISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690 (1833)
Q Consensus 1644 l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l 1690 (1833)
|++++++.| +|||++||+++++..+|||+++|++|++++.|++.++
T Consensus 157 l~~~~~~~~-~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 157 LMQIWEEHR-VTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHhcC-CEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 999865444 5899999999999999999999999999988876554
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=375.63 Aligned_cols=223 Identities=22% Similarity=0.379 Sum_probs=193.6
Q ss_pred cceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcC------eeCC
Q 000224 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFG------KDIR 1535 (1833)
Q Consensus 1462 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G------~~i~ 1535 (1833)
.+++.++|++|+|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++| .++.
T Consensus 8 ~~~i~~~~~~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~ 81 (257)
T PRK14246 8 EDVFNISRLYLYIND------KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIF 81 (257)
T ss_pred hhheeeeeEEEecCC------ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccc
Confidence 467999999999963 5699999999999999999999999999999999999999997777666 4443
Q ss_pred C-ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCC-ChhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHHH
Q 000224 1536 S-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGV-AEYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKRK 1609 (1833)
Q Consensus 1536 ~-~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~-~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgG~kqr 1609 (1833)
. .....++.+||+||++.+++.+|++||+.+.....+. ++.+..+.+.++++.+++. +..++++..||||||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qr 161 (257)
T PRK14246 82 QIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQR 161 (257)
T ss_pred cCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHH
Confidence 2 3345678899999999999889999999887554443 2334556678889999985 35688999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhH
Q 000224 1610 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1689 (1833)
Q Consensus 1610 l~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~ 1689 (1833)
++|||||+.+|++++|||||+|||+.+++.+++.|++++ + + +|||++||+++++..+|||+++|++|++++.|++++
T Consensus 162 l~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~-~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~ 238 (257)
T PRK14246 162 LTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELK-N-E-IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNE 238 (257)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-C-cEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999984 3 3 689999999999999999999999999999999988
Q ss_pred HHhh
Q 000224 1690 LKTR 1693 (1833)
Q Consensus 1690 l~~~ 1693 (1833)
+.++
T Consensus 239 ~~~~ 242 (257)
T PRK14246 239 IFTS 242 (257)
T ss_pred HHhC
Confidence 7643
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=379.41 Aligned_cols=219 Identities=25% Similarity=0.386 Sum_probs=191.8
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCC-----CcceEEEcCccCCc---
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP-----TTGDALVFGKNITA--- 629 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~g~~i~~--- 629 (1833)
..|+++||++.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++..
T Consensus 19 ~~l~~~nl~~~~~~----~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~ 94 (274)
T PRK14265 19 SVFEVEGVKVFYGG----FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQI 94 (274)
T ss_pred ceEEEeeEEEEeCC----eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccc
Confidence 47999999999953 4699999999999999999999999999999999999863 69999999998742
Q ss_pred cHHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHHH
Q 000224 630 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLSL 705 (1833)
Q Consensus 630 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~----~~~~~~~~~LSgGqkqrl~l 705 (1833)
.....++++||+||++.+++. |+.||+.+....++... ..++.+.++++.+++. +..++++.+|||||||||+|
T Consensus 95 ~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~L 172 (274)
T PRK14265 95 NSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYKG-NLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCI 172 (274)
T ss_pred hhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcCchH-HHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHH
Confidence 233567889999999988875 99999988655444322 2345677888888873 45688899999999999999
Q ss_pred HHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEee---------CCEEEeecC
Q 000224 706 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMA---------NGSLKCCGS 776 (1833)
Q Consensus 706 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~---------~G~l~~~G~ 776 (1833)
||||+.+|++|||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|+ +|++++.|+
T Consensus 173 AraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~ 252 (274)
T PRK14265 173 ARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSP 252 (274)
T ss_pred HHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCC
Confidence 99999999999999999999999999999999999878999999999999999999999997 899999999
Q ss_pred HHHHHh
Q 000224 777 SLFLKH 782 (1833)
Q Consensus 777 ~~~Lk~ 782 (1833)
+.++..
T Consensus 253 ~~~~~~ 258 (274)
T PRK14265 253 TEQMFG 258 (274)
T ss_pred HHHHHh
Confidence 877743
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=366.94 Aligned_cols=200 Identities=27% Similarity=0.361 Sum_probs=181.6
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcceE
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 639 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 639 (1833)
++++|+++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.......+++++
T Consensus 2 l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERDE----RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLL 77 (204)
T ss_pred eEEEEEEEEECC----EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheE
Confidence 789999999953 4699999999999999999999999999999999999999999999999988654445677899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEEe
Q 000224 640 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 719 (1833)
Q Consensus 640 ~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 719 (1833)
+++|++.+++.+|+.||+.+.....+. ..+++++++++.+||.+..++++++||||||||++||+||+.+|+++|||
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 154 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILD 154 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999999999999999987655442 23467889999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEe
Q 000224 720 EPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIM 766 (1833)
Q Consensus 720 EPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im 766 (1833)
|||+|||+.+++.++++|++++ +|+|||++||++++++...+|++.+
T Consensus 155 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 155 EPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 9999999999999999999985 5899999999999999988888776
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-39 Score=378.40 Aligned_cols=220 Identities=24% Similarity=0.378 Sum_probs=192.2
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEEcCeeCCCC
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP-----TDGTAFIFGKDIRSD 1537 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~G~~i~~~ 1537 (1833)
++|+++|++|+|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++...
T Consensus 20 ~~l~i~nl~~~~~~------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~ 93 (276)
T PRK14271 20 PAMAAVNLTLGFAG------KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY 93 (276)
T ss_pred cEEEEeeEEEEECC------EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcccc
Confidence 47999999999953 4699999999999999999999999999999999999986 799999999988542
Q ss_pred --hHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcC-CChhhHHHHHHHHHHHcCCcc----ccCCCCCCCChhHHHHH
Q 000224 1538 --PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKG-VAEYRMDDVVMEKLVEFDLLK----HAKKPSFTLSGGNKRKL 1610 (1833)
Q Consensus 1538 --~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g-~~~~~~~~~~~~~l~~~~L~~----~~~~~~~~LSgG~kqrl 1610 (1833)
....+++++|+||++.+++ +|++||+.+.....+ .+..+..+.+.++++.+++.+ ..++.+.+||||||||+
T Consensus 94 ~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl 172 (276)
T PRK14271 94 RDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLL 172 (276)
T ss_pred chhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHH
Confidence 3356778999999998887 899999987543322 233444456677889999863 35788999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000224 1611 SVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690 (1833)
Q Consensus 1611 ~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l 1690 (1833)
+|||||+.+|++|||||||+|||+.+++.+.+.|++++ + + +|||++||+++++..+|||+++|++|++++.|+++++
T Consensus 173 ~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~-~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~ 249 (276)
T PRK14271 173 CLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA-D-R-LTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQL 249 (276)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-c-C-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999985 3 3 5899999999999999999999999999999999988
Q ss_pred Hh
Q 000224 1691 KT 1692 (1833)
Q Consensus 1691 ~~ 1692 (1833)
.+
T Consensus 250 ~~ 251 (276)
T PRK14271 250 FS 251 (276)
T ss_pred Hh
Confidence 64
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=377.10 Aligned_cols=216 Identities=26% Similarity=0.399 Sum_probs=190.2
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCC----CcceEEEcCccCCccHHHh
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP----TTGDALVFGKNITADMDEI 634 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p----~~G~i~i~g~~i~~~~~~~ 634 (1833)
.++++||+|.| + +.+++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. ....
T Consensus 4 ~l~~~~l~~~~-~----~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~-~~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A----QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP-CALR 77 (254)
T ss_pred EEEEeCeEEEe-c----cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccc-cccc
Confidence 58999999999 2 2599999999999999999999999999999999999999 99999999998752 2223
Q ss_pred hcceEEEccCCC--CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCc---ccccccCCCChhHHHHHHHHHHH
Q 000224 635 RKGLGVCPQYDI--LFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLAD---KVNIVVRALSGGMKRKLSLGIAL 709 (1833)
Q Consensus 635 r~~ig~~~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~---~~~~~~~~LSgGqkqrl~lA~al 709 (1833)
++.+||+||++. +.+.+|+.+++.......+... .++++.++++.++|.+ ..++.+.+|||||||||+|||||
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral 155 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPA--DDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALAL 155 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCCh--HHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHH
Confidence 467999999974 4456799999877655445433 2467899999999987 46899999999999999999999
Q ss_pred hCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 710 IGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 710 ~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
+.+|++|||||||+|||+.+++.++++|+++. + |+|||++||+++++..+|||+++|++|+++..|++.++.+
T Consensus 156 ~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 156 LCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred hcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999999999999999984 3 8999999999999999999999999999999999877753
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=376.41 Aligned_cols=219 Identities=26% Similarity=0.374 Sum_probs=193.7
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCC-----CcceEEEcCccCCc---
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP-----TTGDALVFGKNITA--- 629 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~g~~i~~--- 629 (1833)
..+.++++++.|+ ++.+++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++..
T Consensus 7 ~~~~~~~~~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~ 82 (261)
T PRK14263 7 IVMDCKLDKIFYG----NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGV 82 (261)
T ss_pred ceEEEEeEEEEeC----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecccccc
Confidence 5789999999994 34699999999999999999999999999999999999987 79999999998742
Q ss_pred cHHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCc----ccccccCCCChhHHHHHHH
Q 000224 630 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLAD----KVNIVVRALSGGMKRKLSL 705 (1833)
Q Consensus 630 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~----~~~~~~~~LSgGqkqrl~l 705 (1833)
.....++.+||+||++.++ .+|+.||+.+.....+.. .+.++++.++++.++|.+ ..++++++||||||||++|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~l 160 (261)
T PRK14263 83 DPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYK-GDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCI 160 (261)
T ss_pred chHhhhhceEEEecCCccc-cccHHHHHHHHHhhcCch-HHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHH
Confidence 2235677899999999888 589999999876554432 345678899999999854 3467789999999999999
Q ss_pred HHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEee--------CCEEEeecCH
Q 000224 706 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMA--------NGSLKCCGSS 777 (1833)
Q Consensus 706 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~--------~G~l~~~G~~ 777 (1833)
||||+.+|++|||||||+|||+.++++++++|+++++++|||++||+++++..+||||++|+ +|++++.|++
T Consensus 161 aral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~ 240 (261)
T PRK14263 161 ARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPT 240 (261)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCH
Confidence 99999999999999999999999999999999999878999999999999999999999996 8999999998
Q ss_pred HHHHh
Q 000224 778 LFLKH 782 (1833)
Q Consensus 778 ~~Lk~ 782 (1833)
.++.+
T Consensus 241 ~~~~~ 245 (261)
T PRK14263 241 AQIFQ 245 (261)
T ss_pred HHHHh
Confidence 87753
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=384.82 Aligned_cols=225 Identities=24% Similarity=0.432 Sum_probs=193.8
Q ss_pred CCcceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEEcCeeC
Q 000224 1460 VDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY-----PTDGTAFIFGKDI 1534 (1833)
Q Consensus 1460 ~~~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~G~~i 1534 (1833)
+...+|+++|++++|.+ +.+.+|+|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|.++|.++
T Consensus 76 ~~~~~i~~~nls~~y~~----~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i 151 (329)
T PRK14257 76 NHANVFEIRNFNFWYMN----RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNT 151 (329)
T ss_pred CcCceEEEEeeEEEecC----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc
Confidence 34458999999999963 23469999999999999999999999999999999999986 5799999999998
Q ss_pred CC---ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhh-HHHHHHHHHHHcCCc----cccCCCCCCCChhH
Q 000224 1535 RS---DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYR-MDDVVMEKLVEFDLL----KHAKKPSFTLSGGN 1606 (1833)
Q Consensus 1535 ~~---~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~-~~~~~~~~l~~~~L~----~~~~~~~~~LSgG~ 1606 (1833)
.. ....+|+.+|||||++.++. .|++||+.+.....+...++ .++.+.+.++.++|. ...++++.+|||||
T Consensus 152 ~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGq 230 (329)
T PRK14257 152 RSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQ 230 (329)
T ss_pred cccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHH
Confidence 63 22456788999999998885 79999998755444443332 234467778888773 35688999999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecC
Q 000224 1607 KRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS 1686 (1833)
Q Consensus 1607 kqrl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~ 1686 (1833)
||||+|||||+.+|+||||||||+|||+.+++.+++.|+++. + + +|||++||+++++..+||||++|++|++++.|+
T Consensus 231 kqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~-~-~-~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~ 307 (329)
T PRK14257 231 QQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELK-K-K-YSIIIVTHSMAQAQRISDETVFFYQGWIEEAGE 307 (329)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-C-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999985 3 3 589999999999999999999999999999999
Q ss_pred hhHHHh
Q 000224 1687 PQHLKT 1692 (1833)
Q Consensus 1687 ~~~l~~ 1692 (1833)
++++.+
T Consensus 308 ~~~l~~ 313 (329)
T PRK14257 308 TKTIFI 313 (329)
T ss_pred HHHHhc
Confidence 999864
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=374.04 Aligned_cols=220 Identities=24% Similarity=0.393 Sum_probs=185.1
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHHhhcc
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 637 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~ 637 (1833)
.|+++|+++.|++ .+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +....++.
T Consensus 2 ~l~~~~l~~~~~~---~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 2 EIEFENVNFSYDE---KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred eEEEEEEEEecCC---CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 3789999999953 2359999999999999999999999999999999999999999999999988753 34456788
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCCcccccccCCCChhHHHHHHHHHHHh
Q 000224 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLES-----VVAEMVDEV--GLADKVNIVVRALSGGMKRKLSLGIALI 710 (1833)
Q Consensus 638 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~~~~~~LSgGqkqrl~lA~al~ 710 (1833)
+||+||++.+++. |++||+.++.... ......+ .+.+.++.+ |+....++.+.+|||||||||+||+||+
T Consensus 79 i~~~~q~~~~~~~-tv~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~ 155 (229)
T cd03254 79 IGVVLQDTFLFSG-TIMENIRLGRPNA--TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAML 155 (229)
T ss_pred EEEecCCchhhhh-HHHHHHhccCCCC--CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHh
Confidence 9999999988876 9999998753211 1111111 123344443 5555667778999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhC
Q 000224 711 GDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 785 (1833)
Q Consensus 711 ~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~~g 785 (1833)
.+|+++||||||+|||+.+++.+++.|+++++|+|||++||+++++.. |||+++|++|+++..|+.+++..++|
T Consensus 156 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~~~~~~~~~~~ 229 (229)
T cd03254 156 RDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN-ADKILVLDDGKIIEEGTHDELLAKKG 229 (229)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEEeCCeEEEeCCHHHHHhhCC
Confidence 999999999999999999999999999999779999999999999975 99999999999999999877766543
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=371.54 Aligned_cols=214 Identities=26% Similarity=0.374 Sum_probs=184.1
Q ss_pred cceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHH
Q 000224 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKA 1540 (1833)
Q Consensus 1462 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~ 1540 (1833)
+++|+++||+|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....
T Consensus 5 ~~~i~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 78 (225)
T PRK10247 5 SPLLQLQNVGYLAGD------AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEI 78 (225)
T ss_pred CceEEEeccEEeeCC------ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHH
Confidence 347999999999953 459999999999999999999999999999999999999999999999998864 3445
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHHHHHHHHhcC
Q 000224 1541 ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIAMIGD 1619 (1833)
Q Consensus 1541 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~kqrl~lA~al~~~ 1619 (1833)
.++.+||+||++.+++ .|++||+.+....++... .++.+.++++.+++. ...++++.+|||||||||+||+||+.+
T Consensus 79 ~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (225)
T PRK10247 79 YRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQQP--DPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFM 155 (225)
T ss_pred HHhccEEEeccccccc-ccHHHHHHhHHhhcCCCh--HHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 6778999999988887 599999987654443221 234567899999996 568999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEE-CCEEEEecC
Q 000224 1620 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMV-GGQLRCIGS 1686 (1833)
Q Consensus 1620 p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~-~G~i~~~g~ 1686 (1833)
|+++||||||+|||+.+++.+.+.|++++++.| +|||++||++++++ .|||+++|+ ++..+.+|+
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tvii~sh~~~~~~-~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 156 PKVLLLDEITSALDESNKHNVNEIIHRYVREQN-IAVLWVTHDKDEIN-HADKVITLQPHAGEMQEAR 221 (225)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEECChHHHH-hCCEEEEEecccchHhhhh
Confidence 999999999999999999999999999865444 58999999999997 599999995 555555554
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=376.39 Aligned_cols=219 Identities=24% Similarity=0.418 Sum_probs=183.2
Q ss_pred EEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhcc
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARR 1543 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~~~ 1543 (1833)
++++|+++.|+++ .+.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .....++
T Consensus 1 i~~~~l~~~~~~~----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (237)
T cd03252 1 ITFEHVRFRYKPD----GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRR 76 (237)
T ss_pred CEEEEEEEecCCC----CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhh
Confidence 4689999999632 2469999999999999999999999999999999999999999999999998754 3345677
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHH-----HHHHHHHHc--CCccccCCCCCCCChhHHHHHHHHHHH
Q 000224 1544 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDD-----VVMEKLVEF--DLLKHAKKPSFTLSGGNKRKLSVAIAM 1616 (1833)
Q Consensus 1544 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LSgG~kqrl~lA~al 1616 (1833)
.+||+||++.+++ .|++||+.+... +.......+ ...++++.+ ++....++++.+|||||||||+|||||
T Consensus 77 ~i~~~~q~~~~~~-~tv~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 153 (237)
T cd03252 77 QVGVVLQENVLFN-RSIRDNIALADP--GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARAL 153 (237)
T ss_pred cEEEEcCCchhcc-chHHHHhhccCC--CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 8999999988775 699999976421 222211111 122344444 555567789999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhhc
Q 000224 1617 IGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRF 1694 (1833)
Q Consensus 1617 ~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~~ 1694 (1833)
+.+|++|||||||+|||+.+++.+++.|++++ + | +|||++||++++++ .|||+++|++|+++..|+++++.++.
T Consensus 154 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~-~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~~~~~~~~~~~ 227 (237)
T cd03252 154 IHNPRILIFDEATSALDYESEHAIMRNMHDIC-A-G-RTVIIIAHRLSTVK-NADRIIVMEKGRIVEQGSHDELLAEN 227 (237)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-C-CEEEEEeCCHHHHH-hCCEEEEEECCEEEEEcCHHHHHhcc
Confidence 99999999999999999999999999999984 3 4 68999999999996 59999999999999999999887653
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-39 Score=374.85 Aligned_cols=218 Identities=24% Similarity=0.429 Sum_probs=188.8
Q ss_pred EEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEEcCeeCCCC--
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY-----PTDGTAFIFGKDIRSD-- 1537 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~G~~i~~~-- 1537 (1833)
-+++|+++.|+ ++.+++|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|.++|+++...
T Consensus 6 ~~~~~l~~~~~------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 79 (251)
T PRK14244 6 ASVKNLNLWYG------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79 (251)
T ss_pred EEeeeEEEEEC------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhccc
Confidence 36899999995 2469999999999999999999999999999999999986 5799999999987531
Q ss_pred -hHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCC--hhhHHHHHHHHHHHcCCcc----ccCCCCCCCChhHHHHH
Q 000224 1538 -PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVA--EYRMDDVVMEKLVEFDLLK----HAKKPSFTLSGGNKRKL 1610 (1833)
Q Consensus 1538 -~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~--~~~~~~~~~~~l~~~~L~~----~~~~~~~~LSgG~kqrl 1610 (1833)
....++.+||+||++.+++. |++||+.+....++.. ....++.+.++++.+++.+ ..++++.+||||||||+
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 158 (251)
T PRK14244 80 NVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRL 158 (251)
T ss_pred chHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHH
Confidence 23457789999999988875 9999998764444432 2334456778899999964 46788999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000224 1611 SVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690 (1833)
Q Consensus 1611 ~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l 1690 (1833)
+|||||+.+|++|||||||+|||+.+++.+++.|+++. + + +|||++||+++++..+|||+++|++|++++.|+++++
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~-~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 159 CIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-K-N-FTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-C-CeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999984 3 4 6899999999999999999999999999999999887
Q ss_pred Hh
Q 000224 1691 KT 1692 (1833)
Q Consensus 1691 ~~ 1692 (1833)
.+
T Consensus 236 ~~ 237 (251)
T PRK14244 236 FK 237 (251)
T ss_pred hc
Confidence 64
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=414.48 Aligned_cols=220 Identities=25% Similarity=0.369 Sum_probs=194.9
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC--CceEEEEcCeeCCCCh-H
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP--TDGTAFIFGKDIRSDP-K 1539 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p--~~G~i~i~G~~i~~~~-~ 1539 (1833)
++|+++|++|+|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|.++.... .
T Consensus 4 ~~l~~~nl~~~~~~------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~ 77 (506)
T PRK13549 4 YLLEMKNITKTFGG------VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIR 77 (506)
T ss_pred ceEEEeeeEEEeCC------eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHH
Confidence 47999999999952 4699999999999999999999999999999999999996 8999999999986532 2
Q ss_pred -HhccceEEEecCCCCCCCCCHHHHHHHHHHHc--C-CChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHH
Q 000224 1540 -AARRLIGYCPQFDALLEYLTVQEHLELYARIK--G-VAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIA 1615 (1833)
Q Consensus 1540 -~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~--g-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~a 1615 (1833)
..++.+||+||++.+++.+|++||+.+....+ + .+.++..+++.++++.+++.+..++++++|||||||||+||+|
T Consensus 78 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~a 157 (506)
T PRK13549 78 DTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKA 157 (506)
T ss_pred HHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHH
Confidence 24577999999998999999999998765432 2 2333445678899999999888999999999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000224 1616 MIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690 (1833)
Q Consensus 1616 l~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l 1690 (1833)
|+.+|++|||||||+|||+.+++.+++.|++++ ++| +|||++|||++++..+|||+++|++|+++..|+++++
T Consensus 158 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~-~~~-~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 158 LNKQARLLILDEPTASLTESETAVLLDIIRDLK-AHG-IACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCC-CEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 999999999999999999999999999999996 344 5899999999999999999999999999999988765
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=374.11 Aligned_cols=220 Identities=25% Similarity=0.430 Sum_probs=186.2
Q ss_pred EEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhcc
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARR 1543 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~~~ 1543 (1833)
++++|+++.|++. ++.+++++||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .....++
T Consensus 1 i~~~~l~~~~~~~----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (234)
T cd03251 1 VEFKNVTFRYPGD----GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRR 76 (234)
T ss_pred CEEEEEEEEeCCC----CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHh
Confidence 4689999999642 2358999999999999999999999999999999999999999999999998754 3445677
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHH-----HHHHHHHHc--CCccccCCCCCCCChhHHHHHHHHHHH
Q 000224 1544 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDD-----VVMEKLVEF--DLLKHAKKPSFTLSGGNKRKLSVAIAM 1616 (1833)
Q Consensus 1544 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LSgG~kqrl~lA~al 1616 (1833)
.+||+||++.+++ .|++||+.+.... .......+ .+.+.++.+ ++....++++.+||||||||++||+||
T Consensus 77 ~i~~~~q~~~~~~-~tv~enl~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al 153 (234)
T cd03251 77 QIGLVSQDVFLFN-DTVAENIAYGRPG--ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARAL 153 (234)
T ss_pred hEEEeCCCCeecc-ccHHHHhhccCCC--CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHH
Confidence 8999999998886 6999999765321 11111111 234455555 677778889999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhhcC
Q 000224 1617 IGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 1695 (1833)
Q Consensus 1617 ~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~~~ 1695 (1833)
+.+|+++||||||+|||+.+++.+++.|++++ + + .|||++||++++++. |||+++|++|++++.|+++++..+.+
T Consensus 154 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~-~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~ 228 (234)
T cd03251 154 LKDPPILILDEATSALDTESERLVQAALERLM-K-N-RTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEELLAQGG 228 (234)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-C-CEEEEEecCHHHHhh-CCEEEEecCCeEeeeCCHHHHHHcCc
Confidence 99999999999999999999999999999984 3 4 589999999999986 99999999999999999998876653
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=373.51 Aligned_cols=221 Identities=23% Similarity=0.410 Sum_probs=190.5
Q ss_pred cceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC--C---CceEEEEcCeeCCC
Q 000224 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY--P---TDGTAFIFGKDIRS 1536 (1833)
Q Consensus 1462 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~--p---~~G~i~i~G~~i~~ 1536 (1833)
+.+|+++|++|.|+. +.+++++||+|++||++||+|+||||||||+++|+|+.+ | ++|+|.++|.++..
T Consensus 3 ~~~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14255 3 KKIITSSDVHLFYGK------FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76 (252)
T ss_pred cceEEEEeEEEEECC------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccc
Confidence 357999999999962 469999999999999999999999999999999999975 5 59999999998853
Q ss_pred ---ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCCh-hhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHH
Q 000224 1537 ---DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAE-YRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKR 1608 (1833)
Q Consensus 1537 ---~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~-~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgG~kq 1608 (1833)
.....++.+||+||++.+++ .|++||+.+....++... +..++.+.+.++.+++. +..++.+.+|||||||
T Consensus 77 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 77 PNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQ 155 (252)
T ss_pred ccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHH
Confidence 23345678999999998887 799999987655555432 22344566778888763 4578899999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChh
Q 000224 1609 KLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1688 (1833)
Q Consensus 1609 rl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~ 1688 (1833)
|++||+||+.+|++|||||||+|||+.+++.+.+.|++++ + + .|||++||+++++..+||||++|++|+++..|++.
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~-~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELR-D-Q-YTIILVTHSMHQASRISDKTAFFLTGNLIEFADTK 232 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH-h-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999985 3 3 58999999999999999999999999999999988
Q ss_pred HHHh
Q 000224 1689 HLKT 1692 (1833)
Q Consensus 1689 ~l~~ 1692 (1833)
++..
T Consensus 233 ~~~~ 236 (252)
T PRK14255 233 QMFL 236 (252)
T ss_pred HHhc
Confidence 8754
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=414.81 Aligned_cols=220 Identities=27% Similarity=0.394 Sum_probs=194.2
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-hHH-
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-PKA- 1540 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~~- 1540 (1833)
++|+++|++|+|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++... ...
T Consensus 4 ~~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~ 77 (510)
T PRK09700 4 PYISMAGIGKSFGP------VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLA 77 (510)
T ss_pred ceEEEeeeEEEcCC------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHH
Confidence 47999999999953 4699999999999999999999999999999999999999999999999998653 222
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHH----HcCC---ChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHH
Q 000224 1541 ARRLIGYCPQFDALLEYLTVQEHLELYAR----IKGV---AEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVA 1613 (1833)
Q Consensus 1541 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~----~~g~---~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA 1613 (1833)
.++++||+||++.+++.+||+||+.+... ..+. +..+.++++.++++.+||.+..++++++|||||||||+||
T Consensus 78 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia 157 (510)
T PRK09700 78 AQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIA 157 (510)
T ss_pred HHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHH
Confidence 34679999999989999999999976432 1222 2234456788899999999889999999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000224 1614 IAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690 (1833)
Q Consensus 1614 ~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l 1690 (1833)
+||+.+|++|||||||+|||+.+++.+++.|+++++ +| +|||++|||++++..+|||+++|++|++++.|+++++
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g-~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 158 KTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-EG-TAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC-CEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhC
Confidence 999999999999999999999999999999999964 44 6899999999999999999999999999999988764
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=366.34 Aligned_cols=201 Identities=28% Similarity=0.494 Sum_probs=177.4
Q ss_pred EEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-C----hHHh
Q 000224 1467 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-D----PKAA 1541 (1833)
Q Consensus 1467 v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-~----~~~~ 1541 (1833)
++|+++.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. . ....
T Consensus 1 i~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 74 (206)
T TIGR03608 1 LKNISKKFGD------KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFR 74 (206)
T ss_pred CcceEEEECC------EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHH
Confidence 4689999952 459999999999999999999999999999999999999999999999998642 1 1235
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCC
Q 000224 1542 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1621 (1833)
Q Consensus 1542 ~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~ 1621 (1833)
++.+||++|++.+++.+|++||+.+.....+....+..+++.++++.+++.+..++++.+||||||||++||+||+.+|+
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~ 154 (206)
T TIGR03608 75 REKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPP 154 (206)
T ss_pred HhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 67899999999999889999999986655555555556678899999999888999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEE
Q 000224 1622 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIM 1676 (1833)
Q Consensus 1622 vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im 1676 (1833)
+|||||||+|||+.+++.+++.|+++.+ +| .|||++||++++++ +|||+++|
T Consensus 155 llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~~sh~~~~~~-~~d~i~~l 206 (206)
T TIGR03608 155 LILADEPTGSLDPKNRDEVLDLLLELND-EG-KTIIIVTHDPEVAK-QADRVIEL 206 (206)
T ss_pred EEEEeCCcCCCCHHHHHHHHHHHHHHHh-cC-CEEEEEeCCHHHHh-hcCEEEeC
Confidence 9999999999999999999999999864 44 58999999999764 79999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-39 Score=376.91 Aligned_cols=219 Identities=25% Similarity=0.421 Sum_probs=189.5
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEEcCeeCCC-
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY-----PTDGTAFIFGKDIRS- 1536 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~G~~i~~- 1536 (1833)
++|+++|++|+|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 9 ~~l~i~~v~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 82 (264)
T PRK14243 9 TVLRTENLNVYYGS------FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAP 82 (264)
T ss_pred eEEEEeeeEEEECC------EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccc
Confidence 47999999999953 468999999999999999999999999999999999986 489999999998742
Q ss_pred --ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHHHH
Q 000224 1537 --DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKRKL 1610 (1833)
Q Consensus 1537 --~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgG~kqrl 1610 (1833)
.....++++||++|++.+++ .|+.||+.+.....+.. ...++++.++++.+++. +..++++.+||||||||+
T Consensus 83 ~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 83 DVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRL 160 (264)
T ss_pred ccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHH
Confidence 33456778999999988887 59999998765444432 22344566777877774 356889999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEE---------CCEE
Q 000224 1611 SVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMV---------GGQL 1681 (1833)
Q Consensus 1611 ~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~---------~G~i 1681 (1833)
+|||||+.+|++|||||||+|||+.+++.+++.|++++ + + +|||++||+++++..+|||+++|+ +|++
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~-~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i 237 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELK-E-Q-YTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYL 237 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-C-CEEEEEecCHHHHHHhCCEEEEEecccccccccCceE
Confidence 99999999999999999999999999999999999985 3 3 589999999999999999999998 8999
Q ss_pred EEecChhHHHh
Q 000224 1682 RCIGSPQHLKT 1692 (1833)
Q Consensus 1682 ~~~g~~~~l~~ 1692 (1833)
++.|+++++.+
T Consensus 238 ~~~~~~~~~~~ 248 (264)
T PRK14243 238 VEFDRTEKIFN 248 (264)
T ss_pred EEeCCHHHHHh
Confidence 99999999864
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-39 Score=374.92 Aligned_cols=221 Identities=23% Similarity=0.395 Sum_probs=189.8
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCcc-----CCc-cH
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKN-----ITA-DM 631 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~-----i~~-~~ 631 (1833)
+.|+++||++.|++ ..+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ +.. ..
T Consensus 2 ~~l~~~~l~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (253)
T TIGR02323 2 PLLQVSGLSKSYGG----GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSE 77 (253)
T ss_pred ceEEEeeeEEEeCC----ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCH
Confidence 36899999999953 358999999999999999999999999999999999999999999999976 532 22
Q ss_pred H----HhhcceEEEccCCC--CCCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCC-cccccccCCCChhHHHHH
Q 000224 632 D----EIRKGLGVCPQYDI--LFPELTVREHLEMFAVLKG-VKEELLESVVAEMVDEVGLA-DKVNIVVRALSGGMKRKL 703 (1833)
Q Consensus 632 ~----~~r~~ig~~~Q~~~--l~~~lTv~e~l~~~~~~~~-~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSgGqkqrl 703 (1833)
. ..++.+||++|++. +++.+|+.||+.......+ ......++++.++++.+|+. +..++.+++||||||||+
T Consensus 78 ~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv 157 (253)
T TIGR02323 78 AERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRL 157 (253)
T ss_pred HHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHH
Confidence 1 13467999999974 4566799999875432111 12223457889999999997 478999999999999999
Q ss_pred HHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 704 SLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 704 ~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
+|||||+.+|++|||||||+|||+.+++.++++|+++. + |.|||++||+++++..+|||+++|++|+++..|++.++.
T Consensus 158 ~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 158 QIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVL 237 (253)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999999874 3 899999999999999999999999999999999887765
Q ss_pred h
Q 000224 782 H 782 (1833)
Q Consensus 782 ~ 782 (1833)
.
T Consensus 238 ~ 238 (253)
T TIGR02323 238 D 238 (253)
T ss_pred c
Confidence 3
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=377.62 Aligned_cols=223 Identities=27% Similarity=0.359 Sum_probs=195.0
Q ss_pred eEEEEeeEEEecCC-----CCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc----
Q 000224 559 CIQIRKLHKVYATK-----RGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA---- 629 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~-----~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~---- 629 (1833)
.|+++||+|.|+.. ..++.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 58999999999631 013569999999999999999999999999999999999999999999999998753
Q ss_pred cHHHhhcceEEEccCC--CCCCCCCHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCC-cccccccCCCChhHHHHHHH
Q 000224 630 DMDEIRKGLGVCPQYD--ILFPELTVREHLEMFAV-LKGVKEELLESVVAEMVDEVGLA-DKVNIVVRALSGGMKRKLSL 705 (1833)
Q Consensus 630 ~~~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~-~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSgGqkqrl~l 705 (1833)
.....++.+||+||++ .+++..|+.|++.+... ..+....+..++++++++.+|+. ...++.+.+||||||||++|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~l 162 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCL 162 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHH
Confidence 1234577899999997 46678899999876543 23444555566889999999997 57899999999999999999
Q ss_pred HHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 706 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 706 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~-g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
||||+.+|++|||||||+|||+.+++.+.++|++++ + |+|+|++||+++++..+|||+++|++|+++..|++.++.
T Consensus 163 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 163 ARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhcc
Confidence 999999999999999999999999999999999985 3 899999999999999999999999999999999987764
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=338.31 Aligned_cols=216 Identities=26% Similarity=0.439 Sum_probs=199.6
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhcc
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1543 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~~ 1543 (1833)
++.+++++-+|++. ...+++|+|++|.+||.+.++||+|||||||+++++|+.+|+.|+|.++|+.+.....
T Consensus 3 ~l~~~~~sl~y~g~----~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga---- 74 (259)
T COG4525 3 MLNVSHLSLSYEGK----PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA---- 74 (259)
T ss_pred eeehhheEEecCCc----chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc----
Confidence 46788999999753 2569999999999999999999999999999999999999999999999999875432
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEE
Q 000224 1544 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1623 (1833)
Q Consensus 1544 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~vl 1623 (1833)
.-|+|+|+++|+|.+++.||+.|..+++|+++.+..+.+.+.+..+||.+..++.+.+||||||||+.|||||+.+|++|
T Consensus 75 ergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~L 154 (259)
T COG4525 75 ERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLL 154 (259)
T ss_pred cceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceE
Confidence 35899999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEE--CCEEEEecChh
Q 000224 1624 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMV--GGQLRCIGSPQ 1688 (1833)
Q Consensus 1624 lLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~--~G~i~~~g~~~ 1688 (1833)
+||||..+||.-+|+.+.++|.++.++.| +.++++|||.||+--+++|+++|+ .|++++.-+++
T Consensus 155 lLDEPfgAlDa~tRe~mQelLldlw~~tg-k~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 155 LLDEPFGALDALTREQMQELLLDLWQETG-KQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred eecCchhhHHHHHHHHHHHHHHHHHHHhC-CeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 99999999999999999999999887776 479999999999999999999997 57898877665
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-39 Score=374.04 Aligned_cols=219 Identities=26% Similarity=0.417 Sum_probs=194.4
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCC-----CCcceEEEcCccCCc---c
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP-----PTTGDALVFGKNITA---D 630 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~g~~i~~---~ 630 (1833)
.++++||++.|++ +.+++|+||+|.+||+++|+|+||||||||+++|+|+.+ |++|+|.++|.++.. +
T Consensus 3 ~l~~~~v~~~~~~----~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 78 (250)
T PRK14266 3 RIEVENLNTYFDD----AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVD 78 (250)
T ss_pred EEEEEeEEEEeCC----eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccccc
Confidence 4889999999952 469999999999999999999999999999999999864 489999999998753 3
Q ss_pred HHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHHH
Q 000224 631 MDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV-KEELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLSL 705 (1833)
Q Consensus 631 ~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~v~~~l~~~~L~----~~~~~~~~~LSgGqkqrl~l 705 (1833)
....++++|||||++.+|+. |+.||+.+.....+. +.+..++++.++++.+|+. +..++++.+||||||||++|
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~l 157 (250)
T PRK14266 79 VVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCI 157 (250)
T ss_pred HHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHH
Confidence 44567889999999998885 999999876544443 3345677889999999984 34688899999999999999
Q ss_pred HHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 706 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 706 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++|++++.|++.++..
T Consensus 158 aral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14266 158 ARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFI 234 (250)
T ss_pred HHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999888754
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=364.56 Aligned_cols=202 Identities=28% Similarity=0.392 Sum_probs=180.4
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhcc
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1543 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~~ 1543 (1833)
+++++|++|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.......++
T Consensus 1 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~ 74 (204)
T PRK13538 1 MLEARNLACERDE------RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQ 74 (204)
T ss_pred CeEEEEEEEEECC------EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhh
Confidence 4789999999953 4599999999999999999999999999999999999999999999999998654455677
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEE
Q 000224 1544 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1623 (1833)
Q Consensus 1544 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~vl 1623 (1833)
+++|++|++.+++.+|++||+.+....++. ..+++++++++.+||.+..++++.+||||||||++||+||+.+|++|
T Consensus 75 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 151 (204)
T PRK13538 75 DLLYLGHQPGIKTELTALENLRFYQRLHGP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLW 151 (204)
T ss_pred heEEeCCccccCcCCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 899999999898889999999987655442 23456788999999988889999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEE
Q 000224 1624 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIM 1676 (1833)
Q Consensus 1624 lLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im 1676 (1833)
+|||||+|||+.+++.+++.|++++ ++| .|||++||+++++++..+|++.+
T Consensus 152 llDEPt~~LD~~~~~~l~~~l~~~~-~~~-~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 152 ILDEPFTAIDKQGVARLEALLAQHA-EQG-GMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHH-HCC-CEEEEEecChhhhccCCceEEec
Confidence 9999999999999999999999986 344 58999999999999977787665
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=375.74 Aligned_cols=220 Identities=27% Similarity=0.432 Sum_probs=185.0
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHHhhcce
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGL 638 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~i 638 (1833)
++++|+++.|++.+ ++.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .....++.+
T Consensus 1 l~i~~l~~~~~~~~-~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (238)
T cd03249 1 IEFKNVSFRYPSRP-DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQI 79 (238)
T ss_pred CeEEEEEEecCCCC-CccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhE
Confidence 46899999996421 2469999999999999999999999999999999999999999999999988753 334456789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCCcccccccCCCChhHHHHHHHHHHHhC
Q 000224 639 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLES-----VVAEMVDEV--GLADKVNIVVRALSGGMKRKLSLGIALIG 711 (1833)
Q Consensus 639 g~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~~~~~~LSgGqkqrl~lA~al~~ 711 (1833)
||+||++.+++ .||+||+.+....+ ..++..+ .+.+.++.+ ++....++.+.+||||||||++||+||+.
T Consensus 80 ~~~~q~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~ 156 (238)
T cd03249 80 GLVSQEPVLFD-GTIAENIRYGKPDA--TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLR 156 (238)
T ss_pred EEECCchhhhh-hhHHHHhhccCCCC--CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhc
Confidence 99999998886 69999998753221 1122111 123344444 56666788899999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhh
Q 000224 712 DSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQY 784 (1833)
Q Consensus 712 ~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~~ 784 (1833)
+|+++||||||+|||+.+++.+++.|+++++|+|||++||+++++. .|||+++|++|+++..|+..++....
T Consensus 157 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~~~~~~~~~~~~ 228 (238)
T cd03249 157 NPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR-NADLIAVLQNGQVVEQGTHDELMAQK 228 (238)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-hCCEEEEEECCEEEEeCCHHHHhhcC
Confidence 9999999999999999999999999999878899999999999997 79999999999999999987776543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=376.11 Aligned_cols=220 Identities=28% Similarity=0.412 Sum_probs=193.7
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCC-----CcceEEEcCccCC---c
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP-----TTGDALVFGKNIT---A 629 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~g~~i~---~ 629 (1833)
..|+++||+|.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++. .
T Consensus 15 ~~l~~~~l~~~~~~----~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 15 QKSEVNKLNFYYGG----YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred ceEEEEEEEEEECC----eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 46999999999953 3699999999999999999999999999999999999975 7999999998763 1
Q ss_pred --cHHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHcCCC----cccccccCCCChhHHHH
Q 000224 630 --DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEE-LLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRK 702 (1833)
Q Consensus 630 --~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~-~~~~~v~~~l~~~~L~----~~~~~~~~~LSgGqkqr 702 (1833)
.....++.+||+||++.+++. |++||+.+.....+.... ..++++.++++.+++. +..++.+.+||||||||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 169 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQR 169 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHH
Confidence 234567889999999999986 999999877655555432 3456788889988874 45678899999999999
Q ss_pred HHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 703 LSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 703 l~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
++|||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++|++++.|+..++..
T Consensus 170 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 249 (265)
T PRK14252 170 LCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIFI 249 (265)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999999878999999999999999999999999999999999877653
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=369.12 Aligned_cols=201 Identities=24% Similarity=0.402 Sum_probs=179.1
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcceE
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 639 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 639 (1833)
+.++++++.|+ ++.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++..
T Consensus 23 l~~~~~~~~~~----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~---------- 88 (224)
T cd03220 23 LGILGRKGEVG----EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL---------- 88 (224)
T ss_pred hhhhhhhhhcC----CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh----------
Confidence 77888899884 4579999999999999999999999999999999999999999999999986521
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEEe
Q 000224 640 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 719 (1833)
Q Consensus 640 ~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 719 (1833)
..+...+++.+||+||+.+.....+.+..+.++++.++++.+|+.+..++++++||||||||++|||||+.+|+++|||
T Consensus 89 -~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD 167 (224)
T cd03220 89 -LGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLID 167 (224)
T ss_pred -hcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 1122345567899999998776666655666678899999999999899999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeec
Q 000224 720 EPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 775 (1833)
Q Consensus 720 EPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G 775 (1833)
|||+|||+.+++.+++.|++++ +|+|||++||+++++..+|||+++|++|++++.|
T Consensus 168 EP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 168 EVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999985 5799999999999999999999999999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=420.63 Aligned_cols=218 Identities=27% Similarity=0.442 Sum_probs=191.7
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHHhhc
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 636 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~ 636 (1833)
..|+++|++++|+... ..+|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|++||+|+.. +....|+
T Consensus 470 g~I~~~nvsf~y~~~~--~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~ 547 (709)
T COG2274 470 GEIEFENVSFRYGPDD--PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRR 547 (709)
T ss_pred ceEEEEEEEEEeCCCC--cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHh
Confidence 3699999999997643 369999999999999999999999999999999999999999999999999964 7889999
Q ss_pred ceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-----------cccccccCCCChhHHHHHHH
Q 000224 637 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA-----------DKVNIVVRALSGGMKRKLSL 705 (1833)
Q Consensus 637 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~-----------~~~~~~~~~LSgGqkqrl~l 705 (1833)
+||||+|++.+|.. |++||+.++.. ..+ .+++.++++..|.. .........||||||||++|
T Consensus 548 ~ig~V~Q~~~Lf~g-SI~eNi~l~~p--~~~----~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlal 620 (709)
T COG2274 548 QVGYVLQDPFLFSG-SIRENIALGNP--EAT----DEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLAL 620 (709)
T ss_pred heeEEcccchhhcC-cHHHHHhcCCC--CCC----HHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHH
Confidence 99999999999987 99999987531 112 23444444444333 33344556899999999999
Q ss_pred HHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhC
Q 000224 706 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 785 (1833)
Q Consensus 706 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~~g 785 (1833)
||||+.+|+|||||||||+||+.+.+.+.+.|.++.+|+|+|++||++..+. .||||+||++|+++.+|++++|.+.-|
T Consensus 621 ARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~-~adrIiVl~~Gkiv~~gs~~ell~~~g 699 (709)
T COG2274 621 ARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR-SADRIIVLDQGKIVEQGSHEELLAQGG 699 (709)
T ss_pred HHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhh-hccEEEEccCCceeccCCHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999997 599999999999999999999998833
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-39 Score=411.40 Aligned_cols=217 Identities=25% Similarity=0.395 Sum_probs=193.5
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-hHH-
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-PKA- 1540 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~~- 1540 (1833)
++|+++|++|+|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...
T Consensus 10 ~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 83 (510)
T PRK15439 10 PLLCARSISKQYSG------VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKA 83 (510)
T ss_pred ceEEEEeEEEEeCC------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHH
Confidence 47999999999953 4599999999999999999999999999999999999999999999999988652 233
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCC
Q 000224 1541 ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDP 1620 (1833)
Q Consensus 1541 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p 1620 (1833)
.++.+||+||++.+++.+||+||+.+.... ..+.++++.++++.++|.+..++++++|||||||||+||+||+.+|
T Consensus 84 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p 159 (510)
T PRK15439 84 HQLGIYLVPQEPLLFPNLSVKENILFGLPK----RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDS 159 (510)
T ss_pred HhCCEEEEeccCccCCCCcHHHHhhccccc----chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCC
Confidence 235699999999999999999999874321 1234566788999999998899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHH
Q 000224 1621 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1691 (1833)
Q Consensus 1621 ~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~ 1691 (1833)
++|||||||+|||+.+++.+++.|+++++ +| +|||++|||+++++.+||||++|++|++++.|+++++.
T Consensus 160 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g-~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (510)
T PRK15439 160 RILILDEPTASLTPAETERLFSRIRELLA-QG-VGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLS 228 (510)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcC
Confidence 99999999999999999999999999864 44 58999999999999999999999999999999987663
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=372.39 Aligned_cols=195 Identities=32% Similarity=0.478 Sum_probs=175.6
Q ss_pred eeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcceEEEccCCCCCCCCCHHHHHH
Q 000224 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLE 658 (1833)
Q Consensus 579 l~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~ 658 (1833)
++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ...+|+||++.+++.+||+||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~----~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG----PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC----hhheEEecCcccCCCCCHHHHHH
Confidence 57999999999999999999999999999999999999999999999875321 12489999999999999999998
Q ss_pred HHHH--hcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHH
Q 000224 659 MFAV--LKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQL 736 (1833)
Q Consensus 659 ~~~~--~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~ 736 (1833)
++.. ..+.+..+.++++.++++.+||.+..++++++||||||||++|||||+.+|++|||||||+|||+.+++.++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~ 156 (230)
T TIGR01184 77 LAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEE 156 (230)
T ss_pred HHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence 7632 23445555667789999999999888999999999999999999999999999999999999999999999999
Q ss_pred HHHHh--CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCH
Q 000224 737 IKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSS 777 (1833)
Q Consensus 737 l~~~~--~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~ 777 (1833)
|+++. .|+|||++||+++++..+||||++|++|++++.|+.
T Consensus 157 l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~ 199 (230)
T TIGR01184 157 LMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQI 199 (230)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCc
Confidence 99874 389999999999999999999999999999988764
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=378.71 Aligned_cols=212 Identities=24% Similarity=0.441 Sum_probs=189.8
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHHhhcce
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGL 638 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~i 638 (1833)
|+++||++.|+.. ...+|+|+||+|++||+++|+|+||||||||+++|+|+++ ++|+|+++|.++.. +...+|+.|
T Consensus 3 i~~~nls~~~~~~--~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 3 MTVKDLTAKYTEG--GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred EEEEEEEEEeCCC--CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 8899999999642 2359999999999999999999999999999999999998 79999999998853 456678899
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCC-----------CChhHHHHHHHHH
Q 000224 639 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRA-----------LSGGMKRKLSLGI 707 (1833)
Q Consensus 639 g~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~-----------LSgGqkqrl~lA~ 707 (1833)
+||||++.+|+. |++||+..+. ... ++++.++++.+||.+..++.+.. ||||||||++|||
T Consensus 80 ~~v~q~~~lf~~-tv~~nl~~~~---~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaR 151 (275)
T cd03289 80 GVIPQKVFIFSG-TFRKNLDPYG---KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLAR 151 (275)
T ss_pred EEECCCcccchh-hHHHHhhhcc---CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHH
Confidence 999999999975 9999996432 122 24677888999998888887776 9999999999999
Q ss_pred HHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q 000224 708 ALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 783 (1833)
Q Consensus 708 al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~ 783 (1833)
||+.+|++|||||||++||+.+++.+.+.|++..+++|||++||+++++.. ||||++|++|+++..|++.+|.+.
T Consensus 152 all~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~-~dri~vl~~G~i~~~g~~~~l~~~ 226 (275)
T cd03289 152 SVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKLLNE 226 (275)
T ss_pred HHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh-CCEEEEecCCeEeecCCHHHHhhC
Confidence 999999999999999999999999999999998789999999999999975 999999999999999999998763
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=375.93 Aligned_cols=221 Identities=22% Similarity=0.404 Sum_probs=189.8
Q ss_pred CcceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEEcCeeCC
Q 000224 1461 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP-----TDGTAFIFGKDIR 1535 (1833)
Q Consensus 1461 ~~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~G~~i~ 1535 (1833)
..++|+++|+++.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|+++.
T Consensus 17 ~~~~l~~~nl~~~~~~------~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~ 90 (274)
T PRK14265 17 DHSVFEVEGVKVFYGG------FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIY 90 (274)
T ss_pred CCceEEEeeEEEEeCC------eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecc
Confidence 4468999999999953 4699999999999999999999999999999999999863 6999999999885
Q ss_pred C---ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHH
Q 000224 1536 S---DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKR 1608 (1833)
Q Consensus 1536 ~---~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgG~kq 1608 (1833)
. .....+++|||+||++.+++ .|+.||+.+....++... ..++.+.+.++.+++. +..++++.+|||||||
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~q 168 (274)
T PRK14265 91 DSQINSVKLRRQVGMVFQRPNPFP-KSIYENIAFAPRANGYKG-NLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQ 168 (274)
T ss_pred cccchhHHHhhcEEEEccCCcccc-ccHHHHHHhHHHhcCchH-HHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHH
Confidence 3 23345778999999988887 499999987654443321 2334456677887763 4568899999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEE---------CC
Q 000224 1609 KLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMV---------GG 1679 (1833)
Q Consensus 1609 rl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~---------~G 1679 (1833)
||+|||||+.+|++|||||||+|||+.+++.++++|++++ + + +|||++||+++++..+|||+++|+ +|
T Consensus 169 rv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~-~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G 245 (274)
T PRK14265 169 RLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELK-E-Q-YTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRG 245 (274)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-C-CEEEEEeCCHHHHHHhCCEEEEEecccccccccCc
Confidence 9999999999999999999999999999999999999985 3 3 589999999999999999999998 89
Q ss_pred EEEEecChhHHHh
Q 000224 1680 QLRCIGSPQHLKT 1692 (1833)
Q Consensus 1680 ~i~~~g~~~~l~~ 1692 (1833)
++++.|+++++..
T Consensus 246 ~~~~~g~~~~~~~ 258 (274)
T PRK14265 246 KLVEFSPTEQMFG 258 (274)
T ss_pred eEEEeCCHHHHHh
Confidence 9999999988754
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=372.62 Aligned_cols=219 Identities=25% Similarity=0.420 Sum_probs=191.3
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEEcCeeCCC-
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP-----TDGTAFIFGKDIRS- 1536 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~G~~i~~- 1536 (1833)
..+.+++++++|+ ++.+++|+||++++||++||+|+||||||||+++|+|+++| ++|+|.++|.++..
T Consensus 7 ~~~~~~~~~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~ 80 (261)
T PRK14263 7 IVMDCKLDKIFYG------NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGK 80 (261)
T ss_pred ceEEEEeEEEEeC------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecccc
Confidence 5789999999995 35699999999999999999999999999999999999987 79999999998853
Q ss_pred --ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCcc----ccCCCCCCCChhHHHHH
Q 000224 1537 --DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK----HAKKPSFTLSGGNKRKL 1610 (1833)
Q Consensus 1537 --~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~----~~~~~~~~LSgG~kqrl 1610 (1833)
.....++.+||+||++.++ .+|+.||+.+.....+.. .+..+.+.++++.+++.+ ..++++++||||||||+
T Consensus 81 ~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 81 GVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYK-GDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRL 158 (261)
T ss_pred ccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcCch-HHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHH
Confidence 2234577899999998887 599999998876554432 234456788899999853 44678899999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEE--------CCEEE
Q 000224 1611 SVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMV--------GGQLR 1682 (1833)
Q Consensus 1611 ~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~--------~G~i~ 1682 (1833)
+|||||+.+|++|||||||+|||+.+++.+++.|++++ + + +|||++||+++++..+|||+++|+ +|+++
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~-~-~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~ 235 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-K-D-YTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLV 235 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-C-CeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEE
Confidence 99999999999999999999999999999999999984 3 4 589999999999999999999996 89999
Q ss_pred EecChhHHHh
Q 000224 1683 CIGSPQHLKT 1692 (1833)
Q Consensus 1683 ~~g~~~~l~~ 1692 (1833)
+.|+++++.+
T Consensus 236 ~~g~~~~~~~ 245 (261)
T PRK14263 236 EMGPTAQIFQ 245 (261)
T ss_pred EeCCHHHHHh
Confidence 9999988764
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=372.56 Aligned_cols=216 Identities=24% Similarity=0.376 Sum_probs=195.1
Q ss_pred ceEEEEeeEEEecCCC----------------CcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEE
Q 000224 558 RCIQIRKLHKVYATKR----------------GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDAL 621 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~----------------~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~ 621 (1833)
..|+++||+|.|...+ +.+.+++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~ 82 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD 82 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence 4588999999987531 345699999999999999999999999999999999999999999999
Q ss_pred EcCccCCccHHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHH
Q 000224 622 VFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKR 701 (1833)
Q Consensus 622 i~g~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkq 701 (1833)
++|. +++++|++.+.+.+|+.||+.+.....+.+.++..+.++++++.+++.+..++++++|||||||
T Consensus 83 ~~g~------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~q 150 (264)
T PRK13546 83 RNGE------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRA 150 (264)
T ss_pred ECCE------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHH
Confidence 9984 5678888878888999999987766666666666777888999999999899999999999999
Q ss_pred HHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q 000224 702 KLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFL 780 (1833)
Q Consensus 702 rl~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~L 780 (1833)
|++||+||+.+|++|||||||+|||+.+++.+++.|.+++ +|+|||++||+++++..+||||++|++|++++.|+++++
T Consensus 151 rv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 230 (264)
T PRK13546 151 KLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDV 230 (264)
T ss_pred HHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999985 589999999999999999999999999999999999888
Q ss_pred HhhhC
Q 000224 781 KHQYG 785 (1833)
Q Consensus 781 k~~~g 785 (1833)
..+++
T Consensus 231 ~~~~~ 235 (264)
T PRK13546 231 LPKYE 235 (264)
T ss_pred HHHhH
Confidence 77654
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=372.80 Aligned_cols=219 Identities=26% Similarity=0.373 Sum_probs=189.4
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCC--CCCCcceEEEcCccCCc-cHHHh
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGL--IPPTTGDALVFGKNITA-DMDEI 634 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl--~~p~~G~i~i~g~~i~~-~~~~~ 634 (1833)
..++++||++.|++ +.+|+|+||++++||++||+|+||||||||+++|+|+ ++|++|+|.++|.++.. .....
T Consensus 6 ~~l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T CHL00131 6 PILEIKNLHASVNE----NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEER 81 (252)
T ss_pred ceEEEEeEEEEeCC----EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhh
Confidence 46999999999953 3599999999999999999999999999999999998 68999999999998754 22222
Q ss_pred h-cceEEEccCCCCCCCCCHHHHHHHHHHhc----CC---CHHHHHHHHHHHHHHcCCC-cccccccC-CCChhHHHHHH
Q 000224 635 R-KGLGVCPQYDILFPELTVREHLEMFAVLK----GV---KEELLESVVAEMVDEVGLA-DKVNIVVR-ALSGGMKRKLS 704 (1833)
Q Consensus 635 r-~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~----~~---~~~~~~~~v~~~l~~~~L~-~~~~~~~~-~LSgGqkqrl~ 704 (1833)
+ ..+++++|++.+++.+|+.+++.+..... +. ...+..+++.++++.+|+. ...++.+. +|||||||||+
T Consensus 82 ~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~ 161 (252)
T CHL00131 82 AHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNE 161 (252)
T ss_pred heeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHH
Confidence 3 35899999999999999999998754321 11 1223456788999999997 46788887 59999999999
Q ss_pred HHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhh-cCEEEEeeCCEEEeecCHHHH
Q 000224 705 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEEL-GDRIAIMANGSLKCCGSSLFL 780 (1833)
Q Consensus 705 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l-~Dri~im~~G~l~~~G~~~~L 780 (1833)
|||||+.+|+++||||||+|||+.++++++++|++++ +|+|||++||+++++..+ |||+++|++|+++..|+++.+
T Consensus 162 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 162 ILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhhh
Confidence 9999999999999999999999999999999999986 589999999999999887 899999999999999998744
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-39 Score=365.16 Aligned_cols=202 Identities=24% Similarity=0.331 Sum_probs=182.5
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcc
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 637 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ 637 (1833)
..++++|++++|++ +.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... ..++.
T Consensus 10 ~~l~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~--~~~~~ 83 (214)
T PRK13543 10 PLLAAHALAFSRNE----EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG--DRSRF 83 (214)
T ss_pred ceEEEeeEEEecCC----ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch--hhhhc
Confidence 56999999999953 3599999999999999999999999999999999999999999999999987532 34567
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEE
Q 000224 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVI 717 (1833)
Q Consensus 638 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vli 717 (1833)
+||++|++.+++.+|+.||+.+....++.. .++.+.++++.++|.+..++++.+||||||||++||||++.+|+++|
T Consensus 84 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 160 (214)
T PRK13543 84 MAYLGHLPGLKADLSTLENLHFLCGLHGRR---AKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWL 160 (214)
T ss_pred eEEeecCcccccCCcHHHHHHHHHHhcCCc---HHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999998999999999998876555432 34567889999999988899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeC
Q 000224 718 LDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMAN 768 (1833)
Q Consensus 718 LDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~ 768 (1833)
|||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++++.
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 161 LDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999875 589999999999999999999999864
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-39 Score=361.93 Aligned_cols=194 Identities=22% Similarity=0.318 Sum_probs=172.2
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCC---CCcceEEEcCccCCccHHHhh
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP---PTTGDALVFGKNITADMDEIR 635 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~---p~~G~i~i~g~~i~~~~~~~r 635 (1833)
.+.++||+|.|+.+++++.+++|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.......+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 47899999999876566789999999999999999999999999999999999999 899999999998865434567
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcE
Q 000224 636 KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 715 (1833)
Q Consensus 636 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 715 (1833)
+.+||+||++.+++.+||+||+.+..... .++++.+||||||||++|||||+.+|++
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----------------------~~~~~~~LS~Ge~qrl~laral~~~p~l 139 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRCK-----------------------GNEFVRGISGGERKRVSIAEALVSRASV 139 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhhc-----------------------cccchhhCCHHHHHHHHHHHHHhhCCCE
Confidence 78999999999999999999998753211 5678899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEE-cCCHHHHHhhcCEEEEeeCCEEEeec
Q 000224 716 VILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLT-THSMDEAEELGDRIAIMANGSLKCCG 775 (1833)
Q Consensus 716 liLDEPtsgLD~~~r~~l~~~l~~~~-~-g~tiil~-tH~~~e~~~l~Dri~im~~G~l~~~G 775 (1833)
+||||||+|||+.+++.++++|++++ + ++|+|++ +|+++++..+||++++|++|+++..|
T Consensus 140 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 140 LCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999985 3 5676655 56679999999999999999998654
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-39 Score=368.58 Aligned_cols=211 Identities=23% Similarity=0.343 Sum_probs=183.4
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHHhhc
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 636 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~ 636 (1833)
..|+++||++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +....++
T Consensus 6 ~~i~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (225)
T PRK10247 6 PLLQLQNVGYLAGD----AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQ 81 (225)
T ss_pred ceEEEeccEEeeCC----ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHh
Confidence 46999999999953 469999999999999999999999999999999999999999999999998753 3445677
Q ss_pred ceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-cccccccCCCChhHHHHHHHHHHHhCCCcE
Q 000224 637 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA-DKVNIVVRALSGGMKRKLSLGIALIGDSKV 715 (1833)
Q Consensus 637 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 715 (1833)
.+||+||++.+++. |++||+.+....++... .+++++++++.+|+. ...++++.+||||||||++|||||+.+|++
T Consensus 82 ~i~~~~q~~~l~~~-tv~enl~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~l 158 (225)
T PRK10247 82 QVSYCAQTPTLFGD-TVYDNLIFPWQIRNQQP--DPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKV 158 (225)
T ss_pred ccEEEecccccccc-cHHHHHHhHHhhcCCCh--HHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 89999999988874 99999987655443222 245678999999996 467999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEee-CCEEEeecC
Q 000224 716 VILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMA-NGSLKCCGS 776 (1833)
Q Consensus 716 liLDEPtsgLD~~~r~~l~~~l~~~~--~g~tiil~tH~~~e~~~l~Dri~im~-~G~l~~~G~ 776 (1833)
+||||||+|||+.+++.+.++|++++ .|+|||++||+++++. .|||+++|+ ++..+.+|+
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 159 LLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEMQEAR 221 (225)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchHhhhh
Confidence 99999999999999999999999984 3899999999999997 599999995 444444454
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=369.32 Aligned_cols=206 Identities=31% Similarity=0.503 Sum_probs=178.4
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHHhhcce
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGL 638 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~i 638 (1833)
++++|++|.|+++ .+.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. .....++.+
T Consensus 3 l~~~~l~~~~~~~--~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 3 IEFRNVSFSYPNQ--EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred EEEEEEEEEcCCC--CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 7899999999642 2469999999999999999999999999999999999999999999999988743 334457789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccc-----------cCCCChhHHHHHHHHH
Q 000224 639 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIV-----------VRALSGGMKRKLSLGI 707 (1833)
Q Consensus 639 g~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~-----------~~~LSgGqkqrl~lA~ 707 (1833)
||++|++.+++ .|+.||+.+.... . .++++.++++.+++.+..++. +.+||||||||++|||
T Consensus 81 ~~~~q~~~~~~-~tv~e~l~~~~~~--~----~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~ 153 (220)
T cd03245 81 GYVPQDVTLFY-GTLRDNITLGAPL--A----DDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALAR 153 (220)
T ss_pred EEeCCCCcccc-chHHHHhhcCCCC--C----CHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHH
Confidence 99999998886 6999999764211 1 134566788888887766654 4699999999999999
Q ss_pred HHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeec
Q 000224 708 ALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 775 (1833)
Q Consensus 708 al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G 775 (1833)
||+.+|++|||||||+|||+.+++.++++|+++++++|||++||+++++ .+|||+++|++|+++..|
T Consensus 154 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 154 ALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999999999997668999999999988 589999999999997643
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=380.08 Aligned_cols=220 Identities=24% Similarity=0.398 Sum_probs=191.6
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCC-----CCcceEEEcCccCCc---
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP-----PTTGDALVFGKNITA--- 629 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~g~~i~~--- 629 (1833)
..|+++||++.|++ +.+|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 44 ~~l~i~nl~~~~~~----~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~ 119 (305)
T PRK14264 44 AKLSVEDLDVYYGD----DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV 119 (305)
T ss_pred ceEEEEEEEEEeCC----eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 46999999999953 469999999999999999999999999999999999986 689999999998753
Q ss_pred cHHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhc------------CCC-HHHHHHHHHHHHHHcCCC----ccccccc
Q 000224 630 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLK------------GVK-EELLESVVAEMVDEVGLA----DKVNIVV 692 (1833)
Q Consensus 630 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~------------~~~-~~~~~~~v~~~l~~~~L~----~~~~~~~ 692 (1833)
+....|+.+|||||++.+++. ||+||+.+..... +.. .+..++++.++++.+++. +..++++
T Consensus 120 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 198 (305)
T PRK14264 120 NLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNA 198 (305)
T ss_pred cHHHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCcc
Confidence 234567889999999988874 9999998764332 111 123456788999999884 4568889
Q ss_pred CCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEE-EEeeCCEE
Q 000224 693 RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRI-AIMANGSL 771 (1833)
Q Consensus 693 ~~LSgGqkqrl~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri-~im~~G~l 771 (1833)
.+||||||||++||+||+.+|++|||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+ ++|++|++
T Consensus 199 ~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i 278 (305)
T PRK14264 199 LGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGEL 278 (305)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCEE
Confidence 99999999999999999999999999999999999999999999999977789999999999999999997 56799999
Q ss_pred EeecCHHHHHh
Q 000224 772 KCCGSSLFLKH 782 (1833)
Q Consensus 772 ~~~G~~~~Lk~ 782 (1833)
++.|++.++.+
T Consensus 279 ~~~g~~~~~~~ 289 (305)
T PRK14264 279 VEYDDTDKIFE 289 (305)
T ss_pred EEeCCHHHHHh
Confidence 99999877643
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=360.07 Aligned_cols=192 Identities=28% Similarity=0.385 Sum_probs=157.1
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhc
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1542 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~ 1542 (1833)
+++-+.++++.|++ .++.++.++|.|.--..++|+||||.|||||+++|.|-+.|+.|+.+- ..|
T Consensus 585 PvLGlH~VtFgy~g-----qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RK----------nhr 649 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPG-----QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRK----------NHR 649 (807)
T ss_pred CeeecccccccCCC-----CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhc----------cce
Confidence 57889999999974 567899999999999999999999999999999999999999998542 235
Q ss_pred cceEEEecCC--CCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccC-CCCCCCChhHHHHHHHHHHHhcC
Q 000224 1543 RLIGYCPQFD--ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAK-KPSFTLSGGNKRKLSVAIAMIGD 1619 (1833)
Q Consensus 1543 ~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LSgG~kqrl~lA~al~~~ 1619 (1833)
-+||+.-|+. .|-...|..|.| .+...++.. .++..|-.+||..+++ -++..||||||-||++|-.-++.
T Consensus 650 L~iG~FdQh~~E~L~~Eetp~EyL---qr~FNlpyq----~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~ 722 (807)
T KOG0066|consen 650 LRIGWFDQHANEALNGEETPVEYL---QRKFNLPYQ----EARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGG 722 (807)
T ss_pred eeeechhhhhHHhhccccCHHHHH---HHhcCCChH----HHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCC
Confidence 5799999974 455556766655 344456543 3456789999987766 57899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEE
Q 000224 1620 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681 (1833)
Q Consensus 1620 p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i 1681 (1833)
|+||||||||+.||.++...+-++|.++. | .||++|||-..+..---.++|+.+..|
T Consensus 723 PDvlILDEPTNNLDIESIDALaEAIney~---G--gVi~VsHDeRLi~eT~C~LwVvE~Q~i 779 (807)
T KOG0066|consen 723 PDVLILDEPTNNLDIESIDALAEAINEYN---G--GVIMVSHDERLIVETDCNLWVVENQGI 779 (807)
T ss_pred CCEEEecCCCCCcchhhHHHHHHHHHhcc---C--cEEEEecccceeeecCceEEEEccCCh
Confidence 99999999999999999999999999872 3 599999997776554334666655444
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-39 Score=340.54 Aligned_cols=226 Identities=28% Similarity=0.411 Sum_probs=197.9
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHHhhcce
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGL 638 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~i 638 (1833)
|+++||+.+-.+ +.+++++||++++||+.+|+||||||||||||.|+|.+.|++|++.++|.+... ...+..++-
T Consensus 2 i~a~nls~~~~G----r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~r 77 (259)
T COG4559 2 IRAENLSYSLAG----RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHR 77 (259)
T ss_pred eeeeeeEEEeec----ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHh
Confidence 788999988854 469999999999999999999999999999999999999999999999999864 445556778
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhC-----
Q 000224 639 GVCPQYDILFPELTVREHLEMFAVLKG--VKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIG----- 711 (1833)
Q Consensus 639 g~~~Q~~~l~~~lTv~e~l~~~~~~~~--~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~----- 711 (1833)
++.||+..+-...||+|-+.++..-.+ ....+..+.++++|...++.....+...+|||||||||.+||.|+.
T Consensus 78 aVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v 157 (259)
T COG4559 78 AVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPV 157 (259)
T ss_pred hhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCC
Confidence 999999987445799999999865543 3333555668899999999999999999999999999999999975
Q ss_pred -CCcEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHH------HHhh
Q 000224 712 -DSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLF------LKHQ 783 (1833)
Q Consensus 712 -~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~------Lk~~ 783 (1833)
++++|+||||||+||......+.++.+++. +|..|+.+-||++.+..+||||++|++||++++|+|++ |.+-
T Consensus 158 ~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~Etl~~v 237 (259)
T COG4559 158 PSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDETLERV 237 (259)
T ss_pred CCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCHHHHHHH
Confidence 557999999999999999999999999995 68899999999999999999999999999999999864 5566
Q ss_pred hCCcEE
Q 000224 784 YGVGYT 789 (1833)
Q Consensus 784 ~g~gy~ 789 (1833)
||..-.
T Consensus 238 yg~~~~ 243 (259)
T COG4559 238 YGADIR 243 (259)
T ss_pred hCCcee
Confidence 765543
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=362.35 Aligned_cols=204 Identities=25% Similarity=0.318 Sum_probs=181.9
Q ss_pred cceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHh
Q 000224 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAA 1541 (1833)
Q Consensus 1462 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 1541 (1833)
+++++++|++|+|++ +.+++++||++++||++||+|+||||||||+++|+|+++|++|+|.++|+++... ..
T Consensus 9 ~~~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~--~~ 80 (214)
T PRK13543 9 PPLLAAHALAFSRNE------EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG--DR 80 (214)
T ss_pred cceEEEeeEEEecCC------ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch--hh
Confidence 357999999999953 4599999999999999999999999999999999999999999999999988642 23
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCC
Q 000224 1542 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1621 (1833)
Q Consensus 1542 ~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~ 1621 (1833)
++.+||++|++.+++.+|++||+.+....++.. .++.+.++++.++|.+..++++.+||||||||++||+|++.+|+
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 157 (214)
T PRK13543 81 SRFMAYLGHLPGLKADLSTLENLHFLCGLHGRR---AKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAP 157 (214)
T ss_pred hhceEEeecCcccccCCcHHHHHHHHHHhcCCc---HHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 457999999998888899999998876554432 34456788999999888899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEEC
Q 000224 1622 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVG 1678 (1833)
Q Consensus 1622 vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~ 1678 (1833)
+|||||||+|||+.+++.+++.|+++++ +| +|||++||+++++..+|||+++++.
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 158 LWLLDEPYANLDLEGITLVNRMISAHLR-GG-GAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHh-CC-CEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999999999864 44 5899999999999999999999864
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=345.24 Aligned_cols=218 Identities=25% Similarity=0.393 Sum_probs=203.4
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCC-ccHHHhhcce
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT-ADMDEIRKGL 638 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~-~~~~~~r~~i 638 (1833)
|+++||+|+|+ ++.+|+|+|++|++|.+++++||||||||||+++++.++++++|+|+++|.++. .+.+++.+.+
T Consensus 2 I~i~nv~K~y~----~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~l 77 (252)
T COG4604 2 ITIENVSKSYG----TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKL 77 (252)
T ss_pred eeehhhhHhhC----CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHH
Confidence 78999999994 567999999999999999999999999999999999999999999999999996 4667788899
Q ss_pred EEEccCCCCCCCCCHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEE
Q 000224 639 GVCPQYDILFPELTVREHLEMFA--VLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVV 716 (1833)
Q Consensus 639 g~~~Q~~~l~~~lTv~e~l~~~~--~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vl 716 (1833)
.+.-|++..-..+||+|-+.|+. .-+|....+.+..++++++.++|++..|+...+||||||||.-+|+.++.+.+.+
T Consensus 78 SILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyv 157 (252)
T COG4604 78 SILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYV 157 (252)
T ss_pred HHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEE
Confidence 99999999999999999998853 3357667778899999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q 000224 717 ILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 717 iLDEPtsgLD~~~r~~l~~~l~~~~~--g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk 781 (1833)
+||||.++||.....++++.|+++.+ ||||+++-||.++|..++|.|+-|++|+++..|+++++-
T Consensus 158 lLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii 224 (252)
T COG4604 158 LLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEII 224 (252)
T ss_pred EecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhc
Confidence 99999999999999999999999853 999999999999999999999999999999999987753
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=393.28 Aligned_cols=219 Identities=30% Similarity=0.503 Sum_probs=193.0
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHHhhcc
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 637 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~ 637 (1833)
.++.+||++.|+++ +++++|+||++++|+.++|+|+||||||||+++|+|+.+|++|+|.+||.+.+. +....|++
T Consensus 320 ei~~~~l~~~y~~g---~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~ 396 (559)
T COG4988 320 EISLENLSFRYPDG---KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQ 396 (559)
T ss_pred eeeecceEEecCCC---CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhH
Confidence 35556999999753 379999999999999999999999999999999999999999999999999864 66788999
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCccc------cccc----CCCChhHHHHHHHHH
Q 000224 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKV------NIVV----RALSGGMKRKLSLGI 707 (1833)
Q Consensus 638 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~------~~~~----~~LSgGqkqrl~lA~ 707 (1833)
+++|+|+|.+|+. |++||+.++. .+..++++.++++..||.+.. |..+ ..|||||+|||++||
T Consensus 397 i~~v~Q~p~lf~g-TireNi~l~~------~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLAR 469 (559)
T COG4988 397 ISWVSQNPYLFAG-TIRENILLAR------PDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALAR 469 (559)
T ss_pred eeeeCCCCccccc-cHHHHhhccC------CcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHH
Confidence 9999999999987 9999999853 123356777888887776543 3333 459999999999999
Q ss_pred HHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhCCc
Q 000224 708 ALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVG 787 (1833)
Q Consensus 708 al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~~g~g 787 (1833)
||+.+++++|||||||+||.++.+.+.+.|.++.+++|+|++||+++.+.. +|||++|++|+++|.|++++|..+-|..
T Consensus 470 All~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~-~D~I~vld~G~l~~~g~~~~L~~~~~~y 548 (559)
T COG4988 470 ALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAAD-ADRIVVLDNGRLVEQGTHEELSEKQGLY 548 (559)
T ss_pred HhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhc-CCEEEEecCCceeccCCHHHHhhcCcHH
Confidence 999999999999999999999999999999999999999999999999976 9999999999999999999997765543
Q ss_pred E
Q 000224 788 Y 788 (1833)
Q Consensus 788 y 788 (1833)
+
T Consensus 549 ~ 549 (559)
T COG4988 549 A 549 (559)
T ss_pred H
Confidence 3
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=364.94 Aligned_cols=202 Identities=27% Similarity=0.351 Sum_probs=176.3
Q ss_pred EEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccc
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1544 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~~~ 1544 (1833)
+.+++++++|+ ++.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. .
T Consensus 23 l~~~~~~~~~~------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~----~--- 89 (224)
T cd03220 23 LGILGRKGEVG------EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL----L--- 89 (224)
T ss_pred hhhhhhhhhcC------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh----h---
Confidence 66778888885 4669999999999999999999999999999999999999999999999987531 1
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000224 1545 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1624 (1833)
Q Consensus 1545 ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~vll 1624 (1833)
.+...+++.+|++||+.+....++....+.++++.++++.+++.+..++++.+||||||||++|||||+.+|++||
T Consensus 90 ----~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 165 (224)
T cd03220 90 ----GLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILL 165 (224)
T ss_pred ----cccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 1123345678999999887665555544555667888999999988999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEec
Q 000224 1625 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1685 (1833)
Q Consensus 1625 LDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g 1685 (1833)
|||||+|||+.+++.+++.|+++++ +| +|||++||+++++..+|||+++|++|++++.|
T Consensus 166 lDEP~~gLD~~~~~~~~~~l~~~~~-~~-~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 166 IDEVLAVGDAAFQEKCQRRLRELLK-QG-KTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHh-CC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999864 44 58999999999999999999999999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=375.50 Aligned_cols=212 Identities=25% Similarity=0.402 Sum_probs=186.9
Q ss_pred EEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhcc
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARR 1543 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~~~ 1543 (1833)
|+++|++++|+++ ...+|+|+||+|++||++||+|+||||||||+++|+|+++ ++|+|+++|.++.. ....+|+
T Consensus 3 i~~~nls~~~~~~----~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~ 77 (275)
T cd03289 3 MTVKDLTAKYTEG----GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRK 77 (275)
T ss_pred EEEEEEEEEeCCC----CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhh
Confidence 7899999999632 3459999999999999999999999999999999999997 79999999999865 4556788
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCC-----------CChhHHHHHHH
Q 000224 1544 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFT-----------LSGGNKRKLSV 1612 (1833)
Q Consensus 1544 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----------LSgG~kqrl~l 1612 (1833)
+|+||||++.+++ .|+++|+..+.. .. .+++.++++.+||.+..++.+.. ||||||||++|
T Consensus 78 ~i~~v~q~~~lf~-~tv~~nl~~~~~---~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~L 149 (275)
T cd03289 78 AFGVIPQKVFIFS-GTFRKNLDPYGK---WS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCL 149 (275)
T ss_pred hEEEECCCcccch-hhHHHHhhhccC---CC----HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHH
Confidence 9999999999987 599999964321 12 23566778899998878887776 99999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1613 AIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1613 A~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
||||+.+|+||||||||+|||+.+++.+.+.|+++. .+ +|||++||+++++.. ||||++|++|++++.|+++++.+
T Consensus 150 aRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~--~~-~tii~isH~~~~i~~-~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 150 ARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--AD-CTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred HHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CC-CEEEEEECCHHHHHh-CCEEEEecCCeEeecCCHHHHhh
Confidence 999999999999999999999999999999999863 34 689999999999875 99999999999999999999877
Q ss_pred h
Q 000224 1693 R 1693 (1833)
Q Consensus 1693 ~ 1693 (1833)
.
T Consensus 226 ~ 226 (275)
T cd03289 226 E 226 (275)
T ss_pred C
Confidence 4
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=375.74 Aligned_cols=219 Identities=22% Similarity=0.376 Sum_probs=184.6
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhc
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1542 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~ 1542 (1833)
.+|+++|++|+|++ ++.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ...+
T Consensus 5 ~~l~~~~l~~~~~~-----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~--~~~~ 77 (272)
T PRK15056 5 AGIVVNDVTVTWRN-----GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ--ALQK 77 (272)
T ss_pred ceEEEEeEEEEecC-----CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH--hhcc
Confidence 36899999999952 2469999999999999999999999999999999999999999999999998742 1223
Q ss_pred cceEEEecCCCCC--CCCCHHHHHHHHHH----HcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHH
Q 000224 1543 RLIGYCPQFDALL--EYLTVQEHLELYAR----IKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAM 1616 (1833)
Q Consensus 1543 ~~ig~~pQ~~~l~--~~lTv~e~l~~~~~----~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al 1616 (1833)
+.+||+||++.+. ...++++++.+... ..+.+....++.+.++++.++|.+..++++.+||||||||++||+||
T Consensus 78 ~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL 157 (272)
T PRK15056 78 NLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAI 157 (272)
T ss_pred ceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 4699999997652 23478888754211 11112223345677889999999888999999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHH
Q 000224 1617 IGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1691 (1833)
Q Consensus 1617 ~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~ 1691 (1833)
+.+|++|||||||+|||+.+++.+.+.|+++++ +| +|||++||+++++..+|||++++ +|+++..|+++++.
T Consensus 158 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~g-~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 158 AQQGQVILLDEPFTGVDVKTEARIISLLRELRD-EG-KTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CC-CEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 999999999999999999999999999999863 44 58999999999999999999777 89999999988764
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=371.99 Aligned_cols=212 Identities=22% Similarity=0.313 Sum_probs=184.7
Q ss_pred EEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhccc
Q 000224 1466 YLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARRL 1544 (1833)
Q Consensus 1466 ~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~~~~ 1544 (1833)
+++||++. .+|+|+||++++||++||+||||||||||+++|+|+++ .+|+|.++|+++.. .....++.
T Consensus 2 ~~~~l~~~----------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~ 70 (248)
T PRK03695 2 QLNDVAVS----------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARH 70 (248)
T ss_pred cccccchh----------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhh
Confidence 46777763 17999999999999999999999999999999999985 59999999999864 34455667
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhc------
Q 000224 1545 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIG------ 1618 (1833)
Q Consensus 1545 ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~------ 1618 (1833)
+||+||++.+++.+|++||+.+.... +....+..+++.++++.+++.+..++++.+||||||||++||+||+.
T Consensus 71 i~~v~q~~~~~~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~ 149 (248)
T PRK03695 71 RAYLSQQQTPPFAMPVFQYLTLHQPD-KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDIN 149 (248)
T ss_pred eEEecccCccCCCccHHHHHHhcCcc-CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccC
Confidence 99999998888889999999875322 22333345677889999999888899999999999999999999997
Q ss_pred -CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHH
Q 000224 1619 -DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1691 (1833)
Q Consensus 1619 -~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~ 1691 (1833)
+|++|||||||+|||+.+++.+.++|+++++ +| +|||++||+++++..+|||+++|++|++++.|+++++.
T Consensus 150 p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~~-~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 150 PAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ-QG-IAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred CCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CC-CEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 6799999999999999999999999999863 44 68999999999999999999999999999999987764
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=368.09 Aligned_cols=218 Identities=25% Similarity=0.396 Sum_probs=181.1
Q ss_pred EEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhcc
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARR 1543 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~~~ 1543 (1833)
|+++|+++.|++ .+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....++
T Consensus 3 l~~~~l~~~~~~-----~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (229)
T cd03254 3 IEFENVNFSYDE-----KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRS 77 (229)
T ss_pred EEEEEEEEecCC-----CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhh
Confidence 789999999963 2358999999999999999999999999999999999999999999999998754 3445677
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHH-----HHHHHHHHc--CCccccCCCCCCCChhHHHHHHHHHHH
Q 000224 1544 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDD-----VVMEKLVEF--DLLKHAKKPSFTLSGGNKRKLSVAIAM 1616 (1833)
Q Consensus 1544 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LSgG~kqrl~lA~al 1616 (1833)
.+||+||++.+++. |++||+.++.... ...+..+ ...+.++.+ ++....++++.+|||||||||+||+||
T Consensus 78 ~i~~~~q~~~~~~~-tv~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al 154 (229)
T cd03254 78 MIGVVLQDTFLFSG-TIMENIRLGRPNA--TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAM 154 (229)
T ss_pred hEEEecCCchhhhh-HHHHHHhccCCCC--CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHH
Confidence 89999999988775 9999997653211 1111111 112233333 455556677899999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhhc
Q 000224 1617 IGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRF 1694 (1833)
Q Consensus 1617 ~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~~ 1694 (1833)
+.+|++|||||||+|||+.+++.+++.|++++ + + +|||++||++++++. |||+++|++|++++.|+.+++.+++
T Consensus 155 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~-~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~~~~~~~~~~ 228 (229)
T cd03254 155 LRDPKILILDEATSNIDTETEKLIQEALEKLM-K-G-RTSIIIAHRLSTIKN-ADKILVLDDGKIIEEGTHDELLAKK 228 (229)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-C-CEEEEEecCHHHHhh-CCEEEEEeCCeEEEeCCHHHHHhhC
Confidence 99999999999999999999999999999984 3 4 589999999999975 9999999999999999988887654
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-39 Score=340.34 Aligned_cols=221 Identities=27% Similarity=0.388 Sum_probs=193.8
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhc
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAAR 1542 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~~ 1542 (1833)
+|+++||+.+-. .+..++++||++++||+.||+||||||||||+|.|+|.+.|++|++.++|.++.. .+.+..
T Consensus 1 mi~a~nls~~~~------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA 74 (259)
T COG4559 1 MIRAENLSYSLA------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELA 74 (259)
T ss_pred CeeeeeeEEEee------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHH
Confidence 578999998875 3568999999999999999999999999999999999999999999999999876 456667
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHHHHcCCChh--hHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhc--
Q 000224 1543 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEY--RMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIG-- 1618 (1833)
Q Consensus 1543 ~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~--~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~-- 1618 (1833)
++-+++||+..+-...||+|-+.+...-.+...+ +..+.+++.|.+.++...+.+...+|||||||||.+||.|+.
T Consensus 75 ~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~ 154 (259)
T COG4559 75 RHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLW 154 (259)
T ss_pred HHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHcc
Confidence 7789999998775567999999886544422222 445568889999999999999999999999999999999964
Q ss_pred ----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1619 ----DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1619 ----~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
++++|+|||||+.||+..+...+++.++++++ | ..|+.+-||++.+..+||||++|.+||+++.|+|++..+
T Consensus 155 ~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g-~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt 230 (259)
T COG4559 155 PPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-G-GAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLT 230 (259)
T ss_pred CCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-C-CcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcC
Confidence 45699999999999999999999999999854 4 479999999999999999999999999999999987643
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=372.54 Aligned_cols=210 Identities=23% Similarity=0.385 Sum_probs=185.8
Q ss_pred EEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHHhhcceE
Q 000224 561 QIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGLG 639 (1833)
Q Consensus 561 ~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~ig 639 (1833)
+++||++. .+|+|+||++++||+++|+|+||||||||+++|+|++++ +|+|.++|.++.. .....++.+|
T Consensus 2 ~~~~l~~~--------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~ 72 (248)
T PRK03695 2 QLNDVAVS--------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRA 72 (248)
T ss_pred cccccchh--------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheE
Confidence 46677763 179999999999999999999999999999999999865 9999999998853 3445567799
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhC-------C
Q 000224 640 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIG-------D 712 (1833)
Q Consensus 640 ~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~-------~ 712 (1833)
|+||++.+++.+|+.||+.++... +.+.++.+++++++++.+||.+..++.+++||||||||++||+||+. +
T Consensus 73 ~v~q~~~~~~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~ 151 (248)
T PRK03695 73 YLSQQQTPPFAMPVFQYLTLHQPD-KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPA 151 (248)
T ss_pred EecccCccCCCccHHHHHHhcCcc-CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCC
Confidence 999998888889999999876322 23344456788999999999988899999999999999999999997 7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q 000224 713 SKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFL 780 (1833)
Q Consensus 713 p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~L 780 (1833)
|++|||||||+|||+.+++.+.++|++++ +|+|||++||+++++..+|||+++|++|+++..|++.++
T Consensus 152 p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 152 GQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 79999999999999999999999999986 589999999999999999999999999999999987665
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=369.03 Aligned_cols=220 Identities=21% Similarity=0.386 Sum_probs=191.4
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEEcCeeCCC--
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY-----PTDGTAFIFGKDIRS-- 1536 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~G~~i~~-- 1536 (1833)
+++++|+++.|++ +.+++|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.++|.++..
T Consensus 3 ~l~~~~v~~~~~~------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 76 (250)
T PRK14266 3 RIEVENLNTYFDD------AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA 76 (250)
T ss_pred EEEEEeEEEEeCC------eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccc
Confidence 5889999999952 459999999999999999999999999999999999864 489999999998854
Q ss_pred -ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCC-hhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHHHH
Q 000224 1537 -DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVA-EYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKRKL 1610 (1833)
Q Consensus 1537 -~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~-~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgG~kqrl 1610 (1833)
.....++++||+||++.+++. |+.||+.+.....+.. ....++++.++++.+++. +..++++.+||||||||+
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv 155 (250)
T PRK14266 77 VDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRL 155 (250)
T ss_pred ccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHH
Confidence 234567789999999988874 9999998765444332 233556778889999874 346889999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000224 1611 SVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690 (1833)
Q Consensus 1611 ~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l 1690 (1833)
+|||||+.+|++|+|||||+|||+.+++.++++|++++ + + +|||++||+++++..+|||+++|++|++++.|+++++
T Consensus 156 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~-~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 156 CIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-E-D-YTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-C-CeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 99999999999999999999999999999999999984 3 4 5899999999999999999999999999999999887
Q ss_pred Hhh
Q 000224 1691 KTR 1693 (1833)
Q Consensus 1691 ~~~ 1693 (1833)
...
T Consensus 233 ~~~ 235 (250)
T PRK14266 233 FIN 235 (250)
T ss_pred HhC
Confidence 543
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=369.20 Aligned_cols=220 Identities=23% Similarity=0.319 Sum_probs=187.4
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCC--CCCCceEEEEcCeeCCCC-hH
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGE--EYPTDGTAFIFGKDIRSD-PK 1539 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl--~~p~~G~i~i~G~~i~~~-~~ 1539 (1833)
++++++|+++.|++ +.+++|+||++++||++||+|+||||||||+++|+|+ ++|++|+|+++|.++... ..
T Consensus 6 ~~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~ 79 (252)
T CHL00131 6 PILEIKNLHASVNE------NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPE 79 (252)
T ss_pred ceEEEEeEEEEeCC------EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChh
Confidence 47999999999952 4599999999999999999999999999999999998 589999999999988653 22
Q ss_pred Hhcc-ceEEEecCCCCCCCCCHHHHHHHHHHHc----CCC---hhhHHHHHHHHHHHcCCc-cccCCCCC-CCChhHHHH
Q 000224 1540 AARR-LIGYCPQFDALLEYLTVQEHLELYARIK----GVA---EYRMDDVVMEKLVEFDLL-KHAKKPSF-TLSGGNKRK 1609 (1833)
Q Consensus 1540 ~~~~-~ig~~pQ~~~l~~~lTv~e~l~~~~~~~----g~~---~~~~~~~~~~~l~~~~L~-~~~~~~~~-~LSgG~kqr 1609 (1833)
..++ .++|++|++.+++.+|+.+++.+..... +.. ..+..+.+.++++.+++. ...++++. .||||||||
T Consensus 80 ~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qr 159 (252)
T CHL00131 80 ERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKR 159 (252)
T ss_pred hhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHH
Confidence 2222 5899999999999999999987653321 111 112345677889999997 46788887 599999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHH-cCEEEEEECCEEEEecChh
Q 000224 1610 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQAL-CTRIGIMVGGQLRCIGSPQ 1688 (1833)
Q Consensus 1610 l~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l-~drv~im~~G~i~~~g~~~ 1688 (1833)
|+||+||+.+|++|||||||+|||+.+++.++++|++++ ++| +|||++||++++++.+ |||+++|++|+++..|+++
T Consensus 160 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~g-~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~ 237 (252)
T CHL00131 160 NEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLM-TSE-NSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAE 237 (252)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-hCC-CEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChh
Confidence 999999999999999999999999999999999999986 344 5899999999999987 9999999999999999987
Q ss_pred HH
Q 000224 1689 HL 1690 (1833)
Q Consensus 1689 ~l 1690 (1833)
.+
T Consensus 238 ~~ 239 (252)
T CHL00131 238 LA 239 (252)
T ss_pred hh
Confidence 43
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=367.86 Aligned_cols=220 Identities=21% Similarity=0.345 Sum_probs=193.2
Q ss_pred ceEEEEeEEEEcCCCc--------------cccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEE
Q 000224 1463 AIIYLRNLRKVYPGGK--------------RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAF 1528 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~--------------~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~ 1528 (1833)
..|+++||+|.|...+ ....+.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~ 82 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD 82 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence 3588999999986531 11345699999999999999999999999999999999999999999999
Q ss_pred EcCeeCCCChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHH
Q 000224 1529 IFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKR 1608 (1833)
Q Consensus 1529 i~G~~i~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kq 1608 (1833)
++|. +++++|...+.+.+|++||+.+.....+...++..+.+.++++.+++.+..++++.+|||||||
T Consensus 83 ~~g~------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~q 150 (264)
T PRK13546 83 RNGE------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRA 150 (264)
T ss_pred ECCE------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHH
Confidence 9884 4677888777788999999987665556655555566677888899998899999999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChh
Q 000224 1609 KLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1688 (1833)
Q Consensus 1609 rl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~ 1688 (1833)
|++||+||+.+|++|||||||+|||+.+++.+++.|.+++ +.| +|||++||+++++..+|||+++|++|++++.|+++
T Consensus 151 rv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~-~~g-~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~ 228 (264)
T PRK13546 151 KLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFK-EQN-KTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELD 228 (264)
T ss_pred HHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHH-HCC-CEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999985 344 58999999999999999999999999999999999
Q ss_pred HHHhhcCC
Q 000224 1689 HLKTRFGN 1696 (1833)
Q Consensus 1689 ~l~~~~~~ 1696 (1833)
++..++..
T Consensus 229 ~~~~~~~~ 236 (264)
T PRK13546 229 DVLPKYEA 236 (264)
T ss_pred HHHHHhHH
Confidence 98876543
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=369.48 Aligned_cols=220 Identities=22% Similarity=0.411 Sum_probs=181.6
Q ss_pred EEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhcc
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARR 1543 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~~~ 1543 (1833)
++++|+++.|++. +++.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .....++
T Consensus 1 l~i~~l~~~~~~~---~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (238)
T cd03249 1 IEFKNVSFRYPSR---PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRS 77 (238)
T ss_pred CeEEEEEEecCCC---CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHh
Confidence 4689999999642 12469999999999999999999999999999999999999999999999998754 3344567
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHH-----HHHHHHHc--CCccccCCCCCCCChhHHHHHHHHHHH
Q 000224 1544 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDV-----VMEKLVEF--DLLKHAKKPSFTLSGGNKRKLSVAIAM 1616 (1833)
Q Consensus 1544 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~-----~~~~l~~~--~L~~~~~~~~~~LSgG~kqrl~lA~al 1616 (1833)
++||+||++.+++ .|++||+.+....+ ..++..+. +.++++.+ ++....++++.+|||||||||+||+||
T Consensus 78 ~i~~~~q~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al 154 (238)
T cd03249 78 QIGLVSQEPVLFD-GTIAENIRYGKPDA--TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARAL 154 (238)
T ss_pred hEEEECCchhhhh-hhHHHHhhccCCCC--CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHH
Confidence 7999999988876 69999997643211 11111111 12233333 455566788999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhhc
Q 000224 1617 IGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRF 1694 (1833)
Q Consensus 1617 ~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~~ 1694 (1833)
+.+|++|||||||+|||+.+++.+++.|++++ +| +|||++||++++++ +|||+++|++|++++.|+.+++.+..
T Consensus 155 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~g-~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~~~~~~~~~~~~ 228 (238)
T cd03249 155 LRNPKILLLDEATSALDAESEKLVQEALDRAM--KG-RTTIVIAHRLSTIR-NADLIAVLQNGQVVEQGTHDELMAQK 228 (238)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CC-CEEEEEeCCHHHHh-hCCEEEEEECCEEEEeCCHHHHhhcC
Confidence 99999999999999999999999999999984 34 68999999999997 79999999999999999988876543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=409.50 Aligned_cols=223 Identities=23% Similarity=0.390 Sum_probs=194.2
Q ss_pred EEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCceEEEEc------------
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE--YPTDGTAFIF------------ 1530 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~--~p~~G~i~i~------------ 1530 (1833)
|+++|++|+|++ +.+++|+||+|++||++||+||||||||||+|+|+|++ +|++|+|.++
T Consensus 1 l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~ 74 (520)
T TIGR03269 1 IEVKNLTKKFDG------KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74 (520)
T ss_pred CEEEEEEEEECC------eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccc
Confidence 468999999952 46999999999999999999999999999999999997 7999999997
Q ss_pred -----------CeeCC-------C-C---hHHhccceEEEecC-CCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 000224 1531 -----------GKDIR-------S-D---PKAARRLIGYCPQF-DALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLV 1587 (1833)
Q Consensus 1531 -----------G~~i~-------~-~---~~~~~~~ig~~pQ~-~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~ 1587 (1833)
|.++. . . ....++.+||+||+ +.+++.+|++||+.+.....+.+..+.++++.++++
T Consensus 75 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~ 154 (520)
T TIGR03269 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIE 154 (520)
T ss_pred ccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 33221 1 1 12346779999997 678888999999988665556655556677889999
Q ss_pred HcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHH
Q 000224 1588 EFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQ 1667 (1833)
Q Consensus 1588 ~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~ 1667 (1833)
.++|.+..++++++|||||||||+||+||+.+|++|||||||+|||+.+++.++++|++++++.| +|||++|||++++.
T Consensus 155 ~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g-~tviivtHd~~~~~ 233 (520)
T TIGR03269 155 MVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASG-ISMVLTSHWPEVIE 233 (520)
T ss_pred HcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcC-cEEEEEeCCHHHHH
Confidence 99998888999999999999999999999999999999999999999999999999999865444 68999999999999
Q ss_pred HHcCEEEEEECCEEEEecChhHHHhhc
Q 000224 1668 ALCTRIGIMVGGQLRCIGSPQHLKTRF 1694 (1833)
Q Consensus 1668 ~l~drv~im~~G~i~~~g~~~~l~~~~ 1694 (1833)
.+||||++|++|++++.|+++++..++
T Consensus 234 ~~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 234 DLSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred HhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 999999999999999999988776543
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=418.43 Aligned_cols=224 Identities=29% Similarity=0.472 Sum_probs=201.4
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHHhhcc
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 637 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~ 637 (1833)
.|+++||++.||.++ ...+++|+||+|++||.+|||||+||||||.+.+|-..|.|++|.|.|||+|+++ +..++|++
T Consensus 987 ~I~~~~V~F~YPsRP-~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~ 1065 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRP-DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQ 1065 (1228)
T ss_pred EEEEeeeEeeCCCCC-CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHh
Confidence 599999999999875 6789999999999999999999999999999999999999999999999999975 88999999
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-------CCCccccccc----CCCChhHHHHHHHH
Q 000224 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEV-------GLADKVNIVV----RALSGGMKRKLSLG 706 (1833)
Q Consensus 638 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~-------~L~~~~~~~~----~~LSgGqkqrl~lA 706 (1833)
||+|.|+|.||+. |++|||.++ ....+.+ ++.++++.. +|++..|+++ .+||||||||+|||
T Consensus 1066 i~lVsQEP~LF~~-TIrENI~YG--~~~vs~~----eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIA 1138 (1228)
T KOG0055|consen 1066 IGLVSQEPVLFNG-TIRENIAYG--SEEVSEE----EIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIA 1138 (1228)
T ss_pred cceeccCchhhcc-cHHHHHhcc--CCCCCHH----HHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHH
Confidence 9999999999976 999999987 2124443 444444443 4555566655 48999999999999
Q ss_pred HHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhCC
Q 000224 707 IALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGV 786 (1833)
Q Consensus 707 ~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~~g~ 786 (1833)
||++.||+||||||.||+||.+|.+.+.+.|++.+.|||.|+++|++..+.. ||.|+|+++|++++.|++++|.++-|.
T Consensus 1139 RAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqn-aD~I~Vi~~G~VvE~GtH~~L~~~~G~ 1217 (1228)
T KOG0055|consen 1139 RAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQN-ADVIAVLKNGKVVEQGTHDELLAKRGI 1217 (1228)
T ss_pred HHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhc-CCEEEEEECCEEEecccHHHHHhCCCc
Confidence 9999999999999999999999999999999999999999999999999975 999999999999999999999998888
Q ss_pred cEEEE
Q 000224 787 GYTLT 791 (1833)
Q Consensus 787 gy~l~ 791 (1833)
.|.|.
T Consensus 1218 Y~~Lv 1222 (1228)
T KOG0055|consen 1218 YFRLV 1222 (1228)
T ss_pred hHHHh
Confidence 77653
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=407.74 Aligned_cols=227 Identities=19% Similarity=0.338 Sum_probs=195.2
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEEcCeeCCCC
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP-----TDGTAFIFGKDIRSD 1537 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~G~~i~~~ 1537 (1833)
++++++|++++|+++. +.+.+++|+||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~~~--~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~ 81 (529)
T PRK15134 4 PLLAIENLSVAFRQQQ--TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHA 81 (529)
T ss_pred ceEEEeceEEEecCCC--CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccC
Confidence 4799999999996311 124699999999999999999999999999999999999987 799999999998542
Q ss_pred -hH---Hhc-cceEEEecCCC--CCCCCCHHHHHHHHHHH-cCCChhhHHHHHHHHHHHcCCcc---ccCCCCCCCChhH
Q 000224 1538 -PK---AAR-RLIGYCPQFDA--LLEYLTVQEHLELYARI-KGVAEYRMDDVVMEKLVEFDLLK---HAKKPSFTLSGGN 1606 (1833)
Q Consensus 1538 -~~---~~~-~~ig~~pQ~~~--l~~~lTv~e~l~~~~~~-~g~~~~~~~~~~~~~l~~~~L~~---~~~~~~~~LSgG~ 1606 (1833)
.. ..| ++|||+||++. +++.+|++|++.+.... .+.+..+..+++.++++.++|.+ ..++++.+|||||
T Consensus 82 ~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe 161 (529)
T PRK15134 82 SEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGE 161 (529)
T ss_pred CHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHH
Confidence 21 223 57999999964 66778999998765433 35555556677889999999975 3689999999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecC
Q 000224 1607 KRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS 1686 (1833)
Q Consensus 1607 kqrl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~ 1686 (1833)
||||+|||||+.+|++|||||||+|||+.+++.++++|++++++.| .|||++|||++++..+||||++|++|++++.|+
T Consensus 162 ~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g-~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~ 240 (529)
T PRK15134 162 RQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELN-MGLLFITHNLSIVRKLADRVAVMQNGRCVEQNR 240 (529)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcC-CeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999865434 589999999999999999999999999999999
Q ss_pred hhHHHh
Q 000224 1687 PQHLKT 1692 (1833)
Q Consensus 1687 ~~~l~~ 1692 (1833)
++++.+
T Consensus 241 ~~~~~~ 246 (529)
T PRK15134 241 AATLFS 246 (529)
T ss_pred HHHHhh
Confidence 988753
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=370.24 Aligned_cols=221 Identities=25% Similarity=0.386 Sum_probs=190.8
Q ss_pred cceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEEcCeeCCC
Q 000224 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP-----TDGTAFIFGKDIRS 1536 (1833)
Q Consensus 1462 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~G~~i~~ 1536 (1833)
...|+++|++|+|++ +.+++|+||+|++||++||+|+||||||||+++|+|+.+| ++|+|.++|.++..
T Consensus 14 ~~~l~~~~l~~~~~~------~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~ 87 (265)
T PRK14252 14 QQKSEVNKLNFYYGG------YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNI 87 (265)
T ss_pred CceEEEEEEEEEECC------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccc
Confidence 357999999999952 4699999999999999999999999999999999999985 79999999987631
Q ss_pred -----ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChh-hHHHHHHHHHHHcCCc----cccCCCCCCCChhH
Q 000224 1537 -----DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEY-RMDDVVMEKLVEFDLL----KHAKKPSFTLSGGN 1606 (1833)
Q Consensus 1537 -----~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~-~~~~~~~~~l~~~~L~----~~~~~~~~~LSgG~ 1606 (1833)
.....++.+||+||++.+++. |++||+.+.....+.... ..++.+.++++.+++. +..++++.+|||||
T Consensus 88 ~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 166 (265)
T PRK14252 88 LSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQ 166 (265)
T ss_pred cccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHH
Confidence 233567789999999988875 999999876554454332 2345677788888763 45678999999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecC
Q 000224 1607 KRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS 1686 (1833)
Q Consensus 1607 kqrl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~ 1686 (1833)
|||++|||||+.+|+++||||||+|||+.+++.+++.|++++ + + +|||++||+++++..+|||+++|++|++++.|+
T Consensus 167 ~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-~-~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 167 QQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLK-N-K-VTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-h-C-CEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999985 3 3 589999999999999999999999999999999
Q ss_pred hhHHHh
Q 000224 1687 PQHLKT 1692 (1833)
Q Consensus 1687 ~~~l~~ 1692 (1833)
.+++..
T Consensus 244 ~~~~~~ 249 (265)
T PRK14252 244 TDTIFI 249 (265)
T ss_pred HHHHHh
Confidence 988753
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=365.74 Aligned_cols=206 Identities=32% Similarity=0.511 Sum_probs=175.7
Q ss_pred EEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhcc
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARR 1543 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~~~ 1543 (1833)
++++|++|.|+++ .+.+++|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|.++.. .....++
T Consensus 3 l~~~~l~~~~~~~----~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 78 (220)
T cd03245 3 IEFRNVSFSYPNQ----EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRR 78 (220)
T ss_pred EEEEEEEEEcCCC----CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHh
Confidence 7899999999631 2469999999999999999999999999999999999999999999999998754 3344567
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCC-----------CCCCChhHHHHHHH
Q 000224 1544 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKP-----------SFTLSGGNKRKLSV 1612 (1833)
Q Consensus 1544 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LSgG~kqrl~l 1612 (1833)
.+||+||++.+++ .|+.||+.+... .. ..+.+.++++.+++.+..++. +.+||||||||++|
T Consensus 79 ~i~~~~q~~~~~~-~tv~e~l~~~~~---~~---~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~l 151 (220)
T cd03245 79 NIGYVPQDVTLFY-GTLRDNITLGAP---LA---DDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVAL 151 (220)
T ss_pred hEEEeCCCCcccc-chHHHHhhcCCC---CC---CHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHH
Confidence 8999999998876 699999876421 11 123455677888887655554 46999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEec
Q 000224 1613 AIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1685 (1833)
Q Consensus 1613 A~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g 1685 (1833)
|+||+.+|++|||||||+|||+.+++.+++.|++++ + + +|||++||+++++ .+|||+++|++|++++.|
T Consensus 152 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~-~tii~~sH~~~~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 152 ARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLL-G-D-KTLIIITHRPSLL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-C-CEEEEEeCCHHHH-HhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999999999999985 3 3 5899999999987 599999999999997654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=374.83 Aligned_cols=216 Identities=21% Similarity=0.346 Sum_probs=184.9
Q ss_pred eEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcce
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 638 (1833)
Q Consensus 559 ~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~i 638 (1833)
.++++||++.|++ ++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...++.+
T Consensus 6 ~l~~~~l~~~~~~---~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~--~~~~~~i 80 (272)
T PRK15056 6 GIVVNDVTVTWRN---GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ--ALQKNLV 80 (272)
T ss_pred eEEEEeEEEEecC---CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH--hhccceE
Confidence 5999999999952 2469999999999999999999999999999999999999999999999988642 1123469
Q ss_pred EEEccCCCCC--CCCCHHHHHHHHHH----hcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCC
Q 000224 639 GVCPQYDILF--PELTVREHLEMFAV----LKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGD 712 (1833)
Q Consensus 639 g~~~Q~~~l~--~~lTv~e~l~~~~~----~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~ 712 (1833)
||+||++.+. ...+++|++.+... ..+......++++.++++.+||.+..++++.+||||||||++|||||+.+
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~ 160 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQ 160 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 9999998652 23478888865311 11112233456788899999999888999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q 000224 713 SKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFL 780 (1833)
Q Consensus 713 p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~L 780 (1833)
|++|||||||+|||+.+++.+.++|++++ +|+|||++||+++++..+|||++++ +|+++..|++.++
T Consensus 161 p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 161 GQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 99999999999999999999999999986 5899999999999999999999777 8999999987665
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=363.15 Aligned_cols=211 Identities=25% Similarity=0.442 Sum_probs=178.4
Q ss_pred eEEEEeEEEEcCCCcccc-ccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEc--Ce--eCCC-C
Q 000224 1464 IIYLRNLRKVYPGGKRSD-AKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIF--GK--DIRS-D 1537 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~-~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~--G~--~i~~-~ 1537 (1833)
+|+++|++|+|+..+..+ .+.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++ |. ++.. .
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 478999999996321001 2469999999999999999999999999999999999999999999998 43 4432 1
Q ss_pred hH---H-hccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCcc-ccCCCCCCCChhHHHHHHH
Q 000224 1538 PK---A-ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK-HAKKPSFTLSGGNKRKLSV 1612 (1833)
Q Consensus 1538 ~~---~-~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgG~kqrl~l 1612 (1833)
.. . .++++||+||++.+++.+|++||+.+.....+.......+.+.++++.+++.+ ..++++.+||||||||++|
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~l 160 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNI 160 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHH
Confidence 21 1 24579999999999999999999987555445544445567788999999976 4588999999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEE
Q 000224 1613 AIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIM 1676 (1833)
Q Consensus 1613 A~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im 1676 (1833)
|+||+.+|++|||||||+|||+.+++.+.+.|++++ ++| +|||++||++++++.+|||++.+
T Consensus 161 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~g-~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 161 ARGFIADYPILLLDEPTASLDAANRQVVVELIAEAK-ARG-AALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-hcC-CEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999985 344 68999999999999999999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=363.38 Aligned_cols=208 Identities=24% Similarity=0.409 Sum_probs=180.5
Q ss_pred EEEEeeEEEecCCC--C-cccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcC--c--cCCc-cH
Q 000224 560 IQIRKLHKVYATKR--G-NCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFG--K--NITA-DM 631 (1833)
Q Consensus 560 i~i~~l~k~y~~~~--~-~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g--~--~i~~-~~ 631 (1833)
|+++||+|.|+..+ + ++.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| . ++.. +.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 78999999996421 1 24699999999999999999999999999999999999999999999984 3 4421 11
Q ss_pred H---H-hhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCChhHHHHHHHH
Q 000224 632 D---E-IRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADK-VNIVVRALSGGMKRKLSLG 706 (1833)
Q Consensus 632 ~---~-~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-~~~~~~~LSgGqkqrl~lA 706 (1833)
. + .++.+||+||++.+++.+||.|++.+.....+...+..++++.++++.+|+.+. .++++.+||||||||++||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la 161 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIA 161 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHH
Confidence 1 2 246799999999999999999999876555565555667788999999999864 5889999999999999999
Q ss_pred HHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEee
Q 000224 707 IALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMA 767 (1833)
Q Consensus 707 ~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~ 767 (1833)
|||+.+|+++||||||+|||+.+++.+.++|++++ +|+|||++||+++++..+|||++.+.
T Consensus 162 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 162 RGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEecC
Confidence 99999999999999999999999999999999986 58999999999999999999998763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=404.98 Aligned_cols=217 Identities=25% Similarity=0.402 Sum_probs=191.6
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC--hHH
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD--PKA 1540 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~--~~~ 1540 (1833)
++|+++|++|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...
T Consensus 3 ~~l~~~~l~~~~~~------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 76 (501)
T PRK11288 3 PYLSFDGIGKTFPG------VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAA 76 (501)
T ss_pred ceEEEeeeEEEECC------EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHH
Confidence 47999999999953 4599999999999999999999999999999999999999999999999998542 234
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHH--HcC-CChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHh
Q 000224 1541 ARRLIGYCPQFDALLEYLTVQEHLELYAR--IKG-VAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMI 1617 (1833)
Q Consensus 1541 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~--~~g-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~ 1617 (1833)
.+++|||+||++.+++.+|++||+.+... ..+ .+..+.++++.++++.+++.+..++++.+|||||||||+||+||+
T Consensus 77 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~ 156 (501)
T PRK11288 77 LAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALA 156 (501)
T ss_pred HhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHH
Confidence 56789999999989999999999987432 122 233445567888999999988889999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecCh
Q 000224 1618 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1687 (1833)
Q Consensus 1618 ~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~ 1687 (1833)
.+|++|||||||+|||+.+++.+++.|++++ ++| +|||++|||++++..+||||++|++|+++..++.
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~g-~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 157 RNARVIAFDEPTSSLSAREIEQLFRVIRELR-AEG-RVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred hCCCEEEEcCCCCCCCHHHHHHHHHHHHHHH-hCC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999999999986 344 5899999999999999999999999999877653
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=359.02 Aligned_cols=197 Identities=27% Similarity=0.360 Sum_probs=178.2
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcceE
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 639 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 639 (1833)
++++||++.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.......++++|
T Consensus 1 l~i~~l~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDG----RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCC----ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheE
Confidence 468999999953 4699999999999999999999999999999999999999999999999987544456678899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEEEe
Q 000224 640 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 719 (1833)
Q Consensus 640 ~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 719 (1833)
|+||++.+++.+|++||+.++... ..+++++++++.+|+.+..++++.+||||||||++|||||+.+|+++|||
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 150 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHAD------HSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILD 150 (201)
T ss_pred EeccccccCCCcCHHHHHHhhccc------ccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999998899999999875321 13467889999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEe
Q 000224 720 EPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIM 766 (1833)
Q Consensus 720 EPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im 766 (1833)
|||+|||+.++++++++|++++ +|+|+|++||+.++....|||++.+
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 151 EPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 9999999999999999999885 5899999999999999999999876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=367.57 Aligned_cols=204 Identities=25% Similarity=0.451 Sum_probs=178.9
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhc
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1542 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~~ 1542 (1833)
++++++|++|.|++ +.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++| +
T Consensus 3 ~~l~~~~l~~~~~~------~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~----------~ 66 (251)
T PRK09544 3 SLVSLENVSVSFGQ------RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG----------K 66 (251)
T ss_pred cEEEEeceEEEECC------ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC----------c
Confidence 37999999999963 4599999999999999999999999999999999999999999999976 2
Q ss_pred cceEEEecCCCCCCC--CCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCC
Q 000224 1543 RLIGYCPQFDALLEY--LTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDP 1620 (1833)
Q Consensus 1543 ~~ig~~pQ~~~l~~~--lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p 1620 (1833)
..+||+||++.+++. .|+++++.+. .+.. .+++.++++.+++.+..++++.+||||||||++||+||+.+|
T Consensus 67 ~~i~~v~q~~~~~~~l~~~~~~~~~~~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p 139 (251)
T PRK09544 67 LRIGYVPQKLYLDTTLPLTVNRFLRLR---PGTK----KEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRP 139 (251)
T ss_pred cCEEEeccccccccccChhHHHHHhcc---cccc----HHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 369999999877765 3777776432 1221 245678899999998899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHH
Q 000224 1621 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1691 (1833)
Q Consensus 1621 ~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~ 1691 (1833)
++|||||||+|||+.+++.+++.|++++++.| +|||++||+++++..+|||+++|+ |++++.|+++++.
T Consensus 140 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g-~tiiivsH~~~~i~~~~d~i~~l~-~~i~~~g~~~~~~ 208 (251)
T PRK09544 140 QLLVLDEPTQGVDVNGQVALYDLIDQLRRELD-CAVLMVSHDLHLVMAKTDEVLCLN-HHICCSGTPEVVS 208 (251)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHHhCCEEEEEC-CceEeeCCHHHHh
Confidence 99999999999999999999999999864434 589999999999999999999996 5899999988775
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=366.71 Aligned_cols=216 Identities=23% Similarity=0.397 Sum_probs=182.7
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHHhhcce
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGL 638 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~i 638 (1833)
++++|+++.|++ .+.+++|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.. +....++.+
T Consensus 1 l~~~~l~~~~~~---~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i 77 (236)
T cd03253 1 IEFENVTFAYDP---GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAI 77 (236)
T ss_pred CEEEEEEEEeCC---CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhE
Confidence 468999999953 2359999999999999999999999999999999999999999999999998753 445567789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCCcccccccCCCChhHHHHHHHHHHHhC
Q 000224 639 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLES-----VVAEMVDEV--GLADKVNIVVRALSGGMKRKLSLGIALIG 711 (1833)
Q Consensus 639 g~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~~~~~~LSgGqkqrl~lA~al~~ 711 (1833)
||++|++.+++ .|+.||+.++... .......+ .+.+.++.+ ++....++++.+||||||||++|||||+.
T Consensus 78 ~~~~q~~~~~~-~tv~~nl~~~~~~--~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~ 154 (236)
T cd03253 78 GVVPQDTVLFN-DTIGYNIRYGRPD--ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILK 154 (236)
T ss_pred EEECCCChhhc-chHHHHHhhcCCC--CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 99999998886 6999999875321 12222111 123344444 55556677889999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q 000224 712 DSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 712 ~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~ 782 (1833)
+|++|||||||+|||+.+++.++++|+++++|+|||++||+++++.. |||+++|++|+++..|+..++..
T Consensus 155 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~d~~~~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 155 NPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEELLA 224 (236)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh-CCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999999999999998778999999999999976 99999999999999999877765
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=385.10 Aligned_cols=217 Identities=27% Similarity=0.384 Sum_probs=196.3
Q ss_pred cceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChH-
Q 000224 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPK- 1539 (1833)
Q Consensus 1462 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~- 1539 (1833)
.++++++|++|+|++ ..||++|||+|++|||+||+|.||||||||+|+|+|.++||+|+|.++|+.+.. ++.
T Consensus 6 ~~ll~~~~i~K~Fgg------V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~ 79 (500)
T COG1129 6 PPLLELRGISKSFGG------VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRD 79 (500)
T ss_pred cceeeeecceEEcCC------ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHH
Confidence 357999999999964 679999999999999999999999999999999999999999999999998863 444
Q ss_pred HhccceEEEecCCCCCCCCCHHHHHHHHHHHc----CCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHH
Q 000224 1540 AARRLIGYCPQFDALLEYLTVQEHLELYARIK----GVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIA 1615 (1833)
Q Consensus 1540 ~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~----g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~a 1615 (1833)
.....|+.++|+.+|.|+|||.||+.+..... -++++...+++.++|+++++....+.++++||+||||-|.||||
T Consensus 80 A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArA 159 (500)
T COG1129 80 ALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARA 159 (500)
T ss_pred HHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHH
Confidence 44567999999999999999999997654432 25667778889999999999655999999999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecC
Q 000224 1616 MIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS 1686 (1833)
Q Consensus 1616 l~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~ 1686 (1833)
|..+++||||||||+.|+....+.+.+.|++++ ++| .+||++||.|+|+.++||||.||.+|+.++.++
T Consensus 160 l~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk-~~G-v~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 160 LSFDARVLILDEPTAALTVKETERLFDLIRRLK-AQG-VAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-hCC-CEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 999999999999999999999999999999996 455 689999999999999999999999999998776
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=374.35 Aligned_cols=222 Identities=23% Similarity=0.396 Sum_probs=190.1
Q ss_pred CcceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEEcCeeCC
Q 000224 1461 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY-----PTDGTAFIFGKDIR 1535 (1833)
Q Consensus 1461 ~~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~G~~i~ 1535 (1833)
.+.+|+++||++.|++ +.+|+++||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 42 ~~~~l~i~nl~~~~~~------~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~ 115 (305)
T PRK14264 42 GDAKLSVEDLDVYYGD------DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIY 115 (305)
T ss_pred CCceEEEEEEEEEeCC------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 4568999999999963 469999999999999999999999999999999999986 68999999999875
Q ss_pred C---ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHc------------CCCh-hhHHHHHHHHHHHcCCc----ccc
Q 000224 1536 S---DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIK------------GVAE-YRMDDVVMEKLVEFDLL----KHA 1595 (1833)
Q Consensus 1536 ~---~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~------------g~~~-~~~~~~~~~~l~~~~L~----~~~ 1595 (1833)
. .....++++||+||++.+++ .|++||+.+..... +... ...++.+.++++.+++. +..
T Consensus 116 ~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 194 (305)
T PRK14264 116 QDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL 194 (305)
T ss_pred cccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh
Confidence 3 23456778999999988887 59999998754322 1111 22345677888888874 456
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEE-E
Q 000224 1596 KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRI-G 1674 (1833)
Q Consensus 1596 ~~~~~~LSgG~kqrl~lA~al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv-~ 1674 (1833)
++++.+||||||||++||+||+.+|+||||||||+|||+.+++.++++|+++++ + .|||++||+++++..+|||+ +
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~-~tiiivtH~~~~i~~~~d~i~~ 271 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--E-YTVVVVTHNMQQAARISDQTAV 271 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEEcCHHHHHHhcCEEEE
Confidence 889999999999999999999999999999999999999999999999999853 3 58999999999999999997 4
Q ss_pred EEECCEEEEecChhHHHh
Q 000224 1675 IMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1675 im~~G~i~~~g~~~~l~~ 1692 (1833)
+|++|++++.|+++++.+
T Consensus 272 ~l~~G~i~~~g~~~~~~~ 289 (305)
T PRK14264 272 FLTGGELVEYDDTDKIFE 289 (305)
T ss_pred EecCCEEEEeCCHHHHHh
Confidence 679999999999988754
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=364.93 Aligned_cols=206 Identities=25% Similarity=0.429 Sum_probs=178.4
Q ss_pred EEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHHhhcce
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGL 638 (1833)
Q Consensus 560 i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~i 638 (1833)
++++|++++|+.. .+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. +....++.+
T Consensus 3 l~~~~l~~~~~~~--~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 3 IEFKNVSLRYRPN--LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred EEEEEEEEecCCC--CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 7899999999642 2469999999999999999999999999999999999999999999999998753 445567889
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcc-----------cccccCCCChhHHHHHHHHH
Q 000224 639 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADK-----------VNIVVRALSGGMKRKLSLGI 707 (1833)
Q Consensus 639 g~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-----------~~~~~~~LSgGqkqrl~lA~ 707 (1833)
||+||++.+++ .|++||+.++. ... .+++.+.++.+++.+. .++.+.+||||||||++|||
T Consensus 81 ~~~~q~~~l~~-~tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~lar 152 (221)
T cd03244 81 SIIPQDPVLFS-GTIRSNLDPFG---EYS----DEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLAR 152 (221)
T ss_pred EEECCCCcccc-chHHHHhCcCC---CCC----HHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHH
Confidence 99999998876 59999997542 122 2345555666665543 35688999999999999999
Q ss_pred HHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecC
Q 000224 708 ALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776 (1833)
Q Consensus 708 al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~ 776 (1833)
||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++.. |||+++|++|+++..|+
T Consensus 153 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 153 ALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID-SDRILVLDKGRVVEFDS 220 (221)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCeEEecCC
Confidence 999999999999999999999999999999999778999999999999986 99999999999988775
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-38 Score=384.28 Aligned_cols=217 Identities=25% Similarity=0.386 Sum_probs=189.8
Q ss_pred cceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHh
Q 000224 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAA 1541 (1833)
Q Consensus 1462 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 1541 (1833)
.++++++||++.|+++. .+.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 19 ~~mL~lknL~~~~~~~~---~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------- 88 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGE---YHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------- 88 (549)
T ss_pred cceeEEEEEEEecCCCc---cceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee-------
Confidence 35799999999996531 24699999999999999999999999999999999999999999999999752
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCC
Q 000224 1542 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1621 (1833)
Q Consensus 1542 ~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p~ 1621 (1833)
++++...+.+.+|++||+.+.....+.+..+..+.+.++++.+++.+..++++++||||||||++|||||+.+|+
T Consensus 89 -----~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~ 163 (549)
T PRK13545 89 -----LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPD 163 (549)
T ss_pred -----eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCC
Confidence 122334566778999999886655566555556667889999999988999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhhcC
Q 000224 1622 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 1695 (1833)
Q Consensus 1622 vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~~~ 1695 (1833)
+|||||||+|||+.+++.+++.|++++ ++| +|||++||++++++.+|||+++|++|++++.|+++++..++.
T Consensus 164 LLLLDEPTsgLD~~sr~~LlelL~el~-~~G-~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~~ 235 (549)
T PRK13545 164 ILVIDEALSVGDQTFTKKCLDKMNEFK-EQG-KTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYD 235 (549)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHH-hCC-CEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhHH
Confidence 999999999999999999999999985 344 589999999999999999999999999999999998876654
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=367.46 Aligned_cols=209 Identities=24% Similarity=0.420 Sum_probs=180.8
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCc-cHHHhhc
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 636 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~ 636 (1833)
..++++|+++.|+++. ++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....++
T Consensus 10 ~~l~~~~l~~~~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 10 GIVKFQNVTFAYPTRP-DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred ceEEEEEEEEEeCCCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 5799999999996532 2469999999999999999999999999999999999999999999999988743 3345667
Q ss_pred ceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CCCcccccccCCCChhHHHHHHHHHHH
Q 000224 637 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELL-----ESVVAEMVDEV--GLADKVNIVVRALSGGMKRKLSLGIAL 709 (1833)
Q Consensus 637 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~-----~~~v~~~l~~~--~L~~~~~~~~~~LSgGqkqrl~lA~al 709 (1833)
.+|||||++.+++ .|++||+.+.... ....+. +..++++++.+ |+.+..++++.+|||||||||+||+||
T Consensus 89 ~i~~~~q~~~l~~-~tv~~nl~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral 165 (226)
T cd03248 89 KVSLVGQEPVLFA-RSLQDNIAYGLQS--CSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARAL 165 (226)
T ss_pred hEEEEecccHHHh-hhHHHHhccccCC--CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 8999999998886 5999999864321 111111 12356788888 888888999999999999999999999
Q ss_pred hCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEeeCCEE
Q 000224 710 IGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 771 (1833)
Q Consensus 710 ~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~g~tiil~tH~~~e~~~l~Dri~im~~G~l 771 (1833)
+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++.. ||||++|++|++
T Consensus 166 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~i 226 (226)
T cd03248 166 IRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVER-ADQILVLDGGRI 226 (226)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh-CCEEEEecCCcC
Confidence 9999999999999999999999999999998777999999999999975 999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=393.05 Aligned_cols=223 Identities=24% Similarity=0.403 Sum_probs=188.5
Q ss_pred ceEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHh
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAA 1541 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 1541 (1833)
..++++|++++|+.. +..+|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|.+||.|+.. +...+
T Consensus 470 g~I~~~nvsf~y~~~----~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~l 545 (709)
T COG2274 470 GEIEFENVSFRYGPD----DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASL 545 (709)
T ss_pred ceEEEEEEEEEeCCC----CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHH
Confidence 359999999999752 3479999999999999999999999999999999999999999999999999976 77889
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHH-----HHHHHHHc--CCccccCCCCCCCChhHHHHHHHHH
Q 000224 1542 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDV-----VMEKLVEF--DLLKHAKKPSFTLSGGNKRKLSVAI 1614 (1833)
Q Consensus 1542 ~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~-----~~~~l~~~--~L~~~~~~~~~~LSgG~kqrl~lA~ 1614 (1833)
|++||||||++.+|. -|++||+.+... ..+.+++.+. +.+.+..+ |...........||||||||++|||
T Consensus 546 R~~ig~V~Q~~~Lf~-gSI~eNi~l~~p--~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalAR 622 (709)
T COG2274 546 RRQVGYVLQDPFLFS-GSIRENIALGNP--EATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALAR 622 (709)
T ss_pred HhheeEEcccchhhc-CcHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHH
Confidence 999999999999886 599999987432 1222222211 12223322 3334455677889999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhhc
Q 000224 1615 AMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRF 1694 (1833)
Q Consensus 1615 al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~~~ 1694 (1833)
||+++|+|||||||||+||+.+.+.+.+.|.++. +| +|+|++||++..+.. ||||++|++|+++++|+.+++.++.
T Consensus 623 aLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~-~T~I~IaHRl~ti~~-adrIiVl~~Gkiv~~gs~~ell~~~ 698 (709)
T COG2274 623 ALLSKPKILLLDEATSALDPETEAIILQNLLQIL--QG-RTVIIIAHRLSTIRS-ADRIIVLDQGKIVEQGSHEELLAQG 698 (709)
T ss_pred HhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh--cC-CeEEEEEccchHhhh-ccEEEEccCCceeccCCHHHHHHhc
Confidence 9999999999999999999999999999999984 34 589999999998875 9999999999999999999999875
Q ss_pred CC
Q 000224 1695 GN 1696 (1833)
Q Consensus 1695 ~~ 1696 (1833)
|.
T Consensus 699 g~ 700 (709)
T COG2274 699 GL 700 (709)
T ss_pred Ch
Confidence 43
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=385.06 Aligned_cols=214 Identities=21% Similarity=0.351 Sum_probs=190.6
Q ss_pred ceEEEEeeEEEecCCCCcccceeeeeEEEeCCeEEEEecCCCCChHHHHHHHcCCCCCCcceEEEcCccCCccHHHhhcc
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 637 (1833)
Q Consensus 558 ~~i~i~~l~k~y~~~~~~~~al~~vsl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ 637 (1833)
..++++||++.|+++. .+.+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 20 ~mL~lknL~~~~~~~~-~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~---------- 88 (549)
T PRK13545 20 PFDKLKDLFFRSKDGE-YHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA---------- 88 (549)
T ss_pred ceeEEEEEEEecCCCc-cceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee----------
Confidence 4689999999996532 24699999999999999999999999999999999999999999999999641
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhCCCcEEE
Q 000224 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVI 717 (1833)
Q Consensus 638 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vli 717 (1833)
++.+.+.+.+.+|++||+.+.....+.+.++.++++.++++.++|.+..++++++||||||||++|||||+.+|++||
T Consensus 89 --~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLL 166 (549)
T PRK13545 89 --LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILV 166 (549)
T ss_pred --eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEE
Confidence 122344567778999999887665666666677788899999999998999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhh
Q 000224 718 LDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQY 784 (1833)
Q Consensus 718 LDEPtsgLD~~~r~~l~~~l~~~~-~g~tiil~tH~~~e~~~l~Dri~im~~G~l~~~G~~~~Lk~~~ 784 (1833)
|||||+|||+.+++.+++.|++++ +|+|||++||+++++..+|||+++|++|++++.|++.++...+
T Consensus 167 LDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 167 IDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 999999999999999999999985 5899999999999999999999999999999999998886654
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=321.65 Aligned_cols=219 Identities=26% Similarity=0.410 Sum_probs=200.1
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeC--CCC----
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDI--RSD---- 1537 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i--~~~---- 1537 (1833)
.|+++|+++.||. ..+|-|++|+.++||.+.|+||+|||||||+|.|.=+..|.+|+..|.|... +..
T Consensus 2 sirv~~in~~yg~------~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k 75 (242)
T COG4161 2 SIQLNGINCFYGA------HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDK 75 (242)
T ss_pred ceEEccccccccc------chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHH
Confidence 3789999999963 5699999999999999999999999999999999999999999999987643 322
Q ss_pred -hHHhccceEEEecCCCCCCCCCHHHHHHH-HHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHH
Q 000224 1538 -PKAARRLIGYCPQFDALLEYLTVQEHLEL-YARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIA 1615 (1833)
Q Consensus 1538 -~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~-~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~a 1615 (1833)
..++|+.+|+|+|...|||.+||.|||.- ..+..|+++++.+.++.++|+++.|.+++|+.+-+|||||+|||+||||
T Consensus 76 ~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiara 155 (242)
T COG4161 76 AIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARA 155 (242)
T ss_pred HHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHH
Confidence 24578999999999999999999999854 4567899999999999999999999999999999999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000224 1616 MIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690 (1833)
Q Consensus 1616 l~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l 1690 (1833)
|+.+|++|++||||++|||+-..++.++|++++ +.| .|=+++||..+.+.+.+.||+.|.+|+|++.|+....
T Consensus 156 lmmkpqvllfdeptaaldpeitaqvv~iikel~-~tg-itqvivthev~va~k~as~vvyme~g~ive~g~a~~f 228 (242)
T COG4161 156 LMMEPQVLLFDEPTAALDPEITAQIVSIIKELA-ETG-ITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HhcCCcEEeecCcccccCHHHHHHHHHHHHHHH-hcC-ceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhc
Confidence 999999999999999999999999999999996 444 7889999999999999999999999999999987654
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=340.44 Aligned_cols=222 Identities=24% Similarity=0.353 Sum_probs=205.1
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhc
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAAR 1542 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~~ 1542 (1833)
|++++|++|+|+ .+.+++++|++|++|.+.+|+||||||||||+.++++++++++|+|.++|.++.. +.+++.
T Consensus 1 MI~i~nv~K~y~------~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LA 74 (252)
T COG4604 1 MITIENVSKSYG------TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELA 74 (252)
T ss_pred CeeehhhhHhhC------CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHH
Confidence 578999999995 4779999999999999999999999999999999999999999999999999976 566778
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHH--HHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCC
Q 000224 1543 RLIGYCPQFDALLEYLTVQEHLELYA--RIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDP 1620 (1833)
Q Consensus 1543 ~~ig~~pQ~~~l~~~lTv~e~l~~~~--~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrl~lA~al~~~p 1620 (1833)
++++.+-|+..+-..+||+|-+.|+. ..+|...++.+..++++++.++|++..++...+||||||||.-||+.++.+.
T Consensus 75 k~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdT 154 (252)
T COG4604 75 KKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDT 154 (252)
T ss_pred HHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccC
Confidence 88999999998888999999887632 2347677777888999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000224 1621 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1621 ~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l~~ 1692 (1833)
+.++||||.+.||......+++.|++++++-| +||+++-||..++..++|.|+-|++|+++..|+|+++.+
T Consensus 155 dyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~-KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 155 DYVLLDEPLNNLDMKHSVQIMKILRRLADELG-KTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred cEEEecCcccccchHHHHHHHHHHHHHHHHhC-CeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcC
Confidence 99999999999999999999999999987776 589999999999999999999999999999999998764
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=404.43 Aligned_cols=219 Identities=26% Similarity=0.424 Sum_probs=190.7
Q ss_pred eEEEEeEEEEcCCCccccccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC--CceEEEEcCeeCCCC-hH-
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP--TDGTAFIFGKDIRSD-PK- 1539 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Gei~gllG~NGaGKSTll~~l~Gl~~p--~~G~i~i~G~~i~~~-~~- 1539 (1833)
+|+++|++|.|++ +.+++|+||++++||++||+||||||||||+++|+|+++| ++|+|.++|+++... ..
T Consensus 1 ~l~i~~l~~~~~~------~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~ 74 (500)
T TIGR02633 1 LLEMKGIVKTFGG------VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRD 74 (500)
T ss_pred CEEEEeEEEEeCC------eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHH
Confidence 4789999999952 4599999999999999999999999999999999999987 799999999998652 22
Q ss_pred HhccceEEEecCCCCCCCCCHHHHHHHHHHHc--C--CChhhHHHHHHHHHHHcCCcccc-CCCCCCCChhHHHHHHHHH
Q 000224 1540 AARRLIGYCPQFDALLEYLTVQEHLELYARIK--G--VAEYRMDDVVMEKLVEFDLLKHA-KKPSFTLSGGNKRKLSVAI 1614 (1833)
Q Consensus 1540 ~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~--g--~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~LSgG~kqrl~lA~ 1614 (1833)
..+++|||+||++.+++.+|++||+.+..... + ...++..+++.++++.+++.+.. ++++++|||||||||+||+
T Consensus 75 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~ 154 (500)
T TIGR02633 75 TERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAK 154 (500)
T ss_pred HHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHH
Confidence 24567999999998999999999998754322 1 23334456788899999997654 6789999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000224 1615 AMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690 (1833)
Q Consensus 1615 al~~~p~vllLDEPTsgLD~~~~~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~~G~i~~~g~~~~l 1690 (1833)
||+.+|++|||||||+|||+.+++.+++.|++++ ++| +|||++|||++++..+||||++|++|+++..|+++++
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~-~~g-~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 155 ALNKQARLLILDEPSSSLTEKETEILLDIIRDLK-AHG-VACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCC-CEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999999999999999999999999999996 444 5899999999999999999999999999999887653
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=415.85 Aligned_cols=204 Identities=22% Similarity=0.305 Sum_probs=155.1
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHH---------HHhCCCCCCce----E----EEEcCeeCCCCh---------
Q 000224 1485 AVHSLTFSVQAGECFGFLGTNGAGKTTTLS---------MISGEEYPTDG----T----AFIFGKDIRSDP--------- 1538 (1833)
Q Consensus 1485 al~~vs~~v~~Gei~gllG~NGaGKSTll~---------~l~Gl~~p~~G----~----i~i~G~~i~~~~--------- 1538 (1833)
.|+++||+|++||++||.|+||||||||++ .|.|...+..+ . |.|+-..+...+
T Consensus 610 ~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQspigr~~rS~~atY~g 689 (1809)
T PRK00635 610 NLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITRDLPGRSQRSIPLTYIK 689 (1809)
T ss_pred CccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEecCCCCCCCCCCCceeehh
Confidence 699999999999999999999999999999 67776433211 1 233333221100
Q ss_pred --HHhc-------------------------------cceEE----EecC-----------------CCCCCCCCHHHHH
Q 000224 1539 --KAAR-------------------------------RLIGY----CPQF-----------------DALLEYLTVQEHL 1564 (1833)
Q Consensus 1539 --~~~~-------------------------------~~ig~----~pQ~-----------------~~l~~~lTv~e~l 1564 (1833)
+.+| +.+|+ .|.. ...+...||.|+|
T Consensus 690 ~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~e~L~~~~~~~tI~evL 769 (1809)
T PRK00635 690 AFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFLPQVLEVRYKGKNIADIL 769 (1809)
T ss_pred hhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccCHHHHhhccCCCCHHHHH
Confidence 0111 11221 1111 0246678999999
Q ss_pred HHHHHH---cCCChhhHHHHHHHHHHHcCCccc-cCCCCCCCChhHHHHHHHHHHHh---cCCCEEEEeCCCCCCCHHHH
Q 000224 1565 ELYARI---KGVAEYRMDDVVMEKLVEFDLLKH-AKKPSFTLSGGNKRKLSVAIAMI---GDPPIVILDEPSTGMDPIAK 1637 (1833)
Q Consensus 1565 ~~~~~~---~g~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgG~kqrl~lA~al~---~~p~vllLDEPTsgLD~~~~ 1637 (1833)
.+...- .+....++.+++ ++++.+||.+. .++++.+||||||||++||+||+ .+|+++||||||+|||+.++
T Consensus 770 ~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~ 848 (1809)
T PRK00635 770 EMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDI 848 (1809)
T ss_pred HcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHH
Confidence 875431 133334455566 58899999875 79999999999999999999997 69999999999999999999
Q ss_pred HHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEE------CCEEEEecChhHHHh
Q 000224 1638 RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMV------GGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1638 ~~l~~~l~~l~~~~g~~tvil~sH~~~e~~~l~drv~im~------~G~i~~~g~~~~l~~ 1692 (1833)
+.++++|++++ ++| .|||++||+++++ .+|||+++|. +|++++.|+++++.+
T Consensus 849 ~~Ll~lL~~L~-~~G-~TVIiIsHdl~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 849 KALIYVLQSLT-HQG-HTVVIIEHNMHVV-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred HHHHHHHHHHH-hcC-CEEEEEeCCHHHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 99999999996 445 5899999999999 7899999996 799999999988764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1833 | ||||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 4e-26 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 6e-26 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 6e-23 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-21 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 3e-21 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 6e-21 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 7e-21 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-20 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 3e-20 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 3e-20 | ||
| 1g29_1 | 372 | Malk Length = 372 | 6e-20 | ||
| 1g29_1 | 372 | Malk Length = 372 | 4e-19 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 7e-20 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 2e-19 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 3e-19 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 4e-19 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 3e-16 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-18 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 6e-18 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 2e-16 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 3e-07 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 3e-16 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 5e-16 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 1e-10 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 7e-16 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 8e-16 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 2e-10 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 9e-16 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 5e-15 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 7e-13 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 9e-15 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 3e-14 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 8e-14 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 9e-14 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 9e-14 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 3e-13 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 3e-13 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-13 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 4e-13 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 2e-12 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 3e-12 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 1e-11 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 1e-11 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 1e-11 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 1e-11 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-11 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-11 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 2e-11 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 3e-11 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 3e-11 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 3e-11 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 4e-11 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 7e-08 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 4e-10 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 5e-10 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-08 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-09 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-09 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 2e-09 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 1e-09 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-09 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-09 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 5e-09 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 6e-09 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 6e-09 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 6e-09 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 6e-09 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 7e-09 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 9e-09 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 9e-09 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 1e-08 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-08 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 1e-08 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 1e-08 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 3e-08 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 3e-08 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-08 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 5e-08 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 7e-07 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 1e-07 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 1e-07 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 2e-07 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 2e-07 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-07 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 6e-07 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 6e-07 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 8e-07 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 8e-07 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 2e-04 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 9e-07 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 2e-04 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 1e-06 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 4e-04 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 1e-06 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 1e-06 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 3e-06 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 3e-06 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 4e-06 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 4e-06 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 2e-05 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 6e-06 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 8e-06 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 1e-05 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 1e-05 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 2e-05 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 4e-05 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 1e-04 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 2e-04 |
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 267 bits (684), Expect = 3e-81
Identities = 72/257 (28%), Positives = 132/257 (51%), Gaps = 14/257 (5%)
Query: 1450 VERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGK 1509
+ +++ + +++LRK K + ++F ++ GE FG +G NGAGK
Sbjct: 1 MGSDKIHHHHHHMGAVVVKDLRKRI------GKKEILKGISFEIEEGEIFGLIGPNGAGK 54
Query: 1510 TTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYAR 1569
TTTL +IS P+ G +FGK++ +P R+LI Y P+ + E+L A
Sbjct: 55 TTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAG 114
Query: 1570 IKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPS 1629
+ ++++V L + K T S G RKL +A A++ +P + ILDEP+
Sbjct: 115 FYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPT 174
Query: 1630 TGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1689
+G+D + R + +++ + S ++G T +++++H+M E + LC RI ++ G + G+ +
Sbjct: 175 SGLDVLNAREVRKILKQAS-QEGLT-ILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEE 232
Query: 1690 LKTRFGN------FLEL 1700
LK R+ F E+
Sbjct: 233 LKERYKAQNIEEVFEEV 249
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 262 bits (671), Expect = 1e-79
Identities = 73/227 (32%), Positives = 122/227 (53%), Gaps = 5/227 (2%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+ ++ L K G + + + E +I L+G NGAGK+TT+ ++ LI P++G
Sbjct: 16 VVVKDLRKRI----GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 71
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 679
VFGKN+ + E+RK + P+ + + E+L A +E +V
Sbjct: 72 VTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERAT 131
Query: 680 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 739
+ GL +K+ V S GM RKL + AL+ + ++ ILDEPTSG+D + R +++K+
Sbjct: 132 EIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ 191
Query: 740 IKK-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 785
+ G IL+++H+M E E L DRIA++ NG++ G+ LK +Y
Sbjct: 192 ASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYK 238
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 222 bits (569), Expect = 2e-66
Identities = 45/214 (21%), Positives = 97/214 (45%), Gaps = 18/214 (8%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
++IR L Y + + +T+ + ++ G NG GK+T + + + P G+
Sbjct: 11 LEIRDLSVGYDKP-----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE 65
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 679
+ G IT +++ + P+ I+ +++V ++L+ A L GVK ++ + + +
Sbjct: 66 IIYNGVPIT----KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN--KNEIMDAL 119
Query: 680 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 739
+ V + D + LS G R++ L L+ ++++ +LD+P +D S + I +
Sbjct: 120 ESVEVLDLKKK-LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILE 178
Query: 740 IKK--GRIILLTTHSMDEAEELGDRIAIMANGSL 771
I K G +I+ + + D + S
Sbjct: 179 ILKEKGIVIISSREELSYC----DVNENLHKYST 208
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 215 bits (551), Expect = 4e-64
Identities = 48/221 (21%), Positives = 92/221 (41%), Gaps = 23/221 (10%)
Query: 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1522
+ + +R+L Y K + +T +++ G F G NG GKTT L IS P
Sbjct: 9 SKLEIRDLSVGY-------DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP 61
Query: 1523 TDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGV--AEYRMDD 1580
G G I + I + P+ + ++V+++L+ A + GV + + D
Sbjct: 62 LKGEIIYNGVPITK----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMD 117
Query: 1581 VVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1640
+ + VE + KK LS G R++ +A ++ + I +LD+P +D +K +
Sbjct: 118 AL--ESVE---VLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKV 172
Query: 1641 WEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
+ I + +G +I + ++ C +
Sbjct: 173 LKSILEILKEKGIV-IISSREELSY----CDVNENLHKYST 208
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 177 bits (450), Expect = 1e-49
Identities = 60/246 (24%), Positives = 111/246 (45%), Gaps = 23/246 (9%)
Query: 1461 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE 1520
+ +I L + ++ G K + +++ + G+ + G NGAGKTT L++++ E
Sbjct: 18 SHMLIQLDQIGRMKQG------KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYE 71
Query: 1521 YPTDGTAFIFGKDIRS---DPKAARRLIGYCPQ--FDALLEYLTVQE--------HLELY 1567
T GT +FGK + R+ IG+ + E V + + +Y
Sbjct: 72 PATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVY 131
Query: 1568 ARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDE 1627
I + L + A++ LS G K+++ +A A++G P ++ILDE
Sbjct: 132 QDIDDEIRNE----AHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDE 187
Query: 1628 PSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1687
P+ G+D IA+ + ++ LS A+I TH + E A ++I ++ GQ G+
Sbjct: 188 PAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAV 247
Query: 1688 QHLKTR 1693
+ + T
Sbjct: 248 EDILTS 253
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 2e-43
Identities = 49/236 (20%), Positives = 102/236 (43%), Gaps = 30/236 (12%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
IQ+ ++ ++ K + + + + L G NGAGK+T +++L P T+G
Sbjct: 22 IQLDQIGRMKQGKT----ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGT 77
Query: 620 ALVFGK---NITADMDEIRKGLGVCPQ---YDILFPELTVREHLEMFAVLKG-------- 665
+FGK + + +R+ +G E V + V+ G
Sbjct: 78 VNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGE-RVID-----VVISGAFKSIGVY 131
Query: 666 --VKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTS 723
+ +E+ +++ VG++ K + LS G K+++ + AL+G +V+ILDEP +
Sbjct: 132 QDIDDEIRN-EAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAA 190
Query: 724 GMDPYSMRLTWQLIKKI---KKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
G+D + ++ + ++ TH ++E +I ++ +G G+
Sbjct: 191 GLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGA 246
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 3e-43
Identities = 60/249 (24%), Positives = 109/249 (43%), Gaps = 17/249 (6%)
Query: 1459 SVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG 1518
S+++ I+ + L Y G A+ + +++ GE LG NG GK+T +G
Sbjct: 2 SLEDYILKVEELNYNYSDGTH-----ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNG 56
Query: 1519 EEYPTDGTAFIFGKDIRSDPKA---ARRLIGYCPQF-DALLEYLTVQEHLELYARIKGVA 1574
P+ G K I K R IG Q D L +V + + A +
Sbjct: 57 ILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLP 116
Query: 1575 EYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVA--IAMIGDPPIVILDEPSTGM 1632
E + V L + KP+ LS G K+++++A + M +P ++ILDEP+ G+
Sbjct: 117 EDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVM--EPKVLILDEPTAGL 174
Query: 1633 DPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692
DP+ + +++ + G T +I+ TH ++ C + +M G++ G+P+ +
Sbjct: 175 DPMGVSEIMKLLVEMQKELGIT-IIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV-- 231
Query: 1693 RFGNFLELE 1701
F +
Sbjct: 232 -FAEKEVIR 239
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 148 bits (377), Expect = 7e-40
Identities = 55/225 (24%), Positives = 112/225 (49%), Gaps = 13/225 (5%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+++ +L+ Y+ A+ + + + ++ A+LG NG GKST G++ P++G
Sbjct: 8 LKVEELNYNYSDGT---HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGR 64
Query: 620 ALVFGKNITAD---MDEIRKGLGVCPQY--DILFPELTVREHLEMFAVL-KGVKEELLES 673
L K I + ++R+ +G+ Q + LF +V + + F + + E+ +
Sbjct: 65 ILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLF-SASVYQDV-SFGAVNMKLPEDEIRK 122
Query: 674 VVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLT 733
V + G+ + LS G K+++++ L+ + KV+ILDEPT+G+DP +
Sbjct: 123 RVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEI 182
Query: 734 WQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
+L+ +++K G I++ TH +D D + +M G + G+
Sbjct: 183 MKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 227
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 1e-41
Identities = 68/261 (26%), Positives = 105/261 (40%), Gaps = 27/261 (10%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1523
+I L+N+ G + ++ ++ V GE LG NG+GKTT L ISG P
Sbjct: 1 MIQLKNVGITLSGK--GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY 56
Query: 1524 DGTAFIFGKDIRSDPKAARRLIGYCPQ-FDALLEYLTVQEHLELYARIKGVAEYRMDDVV 1582
G FI G ++R R I Y +A +TV + + LY +KG+
Sbjct: 57 SGNIFINGMEVRK----IRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDL----F 108
Query: 1583 MEKLVEFDLLKH-AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMW 1641
+E L L + ++ + LS G + ++A+ P IV LDEP +D + +
Sbjct: 109 LEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVIS 168
Query: 1642 EVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIM-VGGQLRCIGSPQHL-------KTR 1693
I GK IL TH ++ VG +L+ S L R
Sbjct: 169 RYIKEY----GKE-GILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESSIVEGER 223
Query: 1694 FGNFLELEVKPTEVSSVDLED 1714
L L++ +VS V +
Sbjct: 224 NDALLVLDIMDKKVSIVKGDL 244
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 149 bits (379), Expect = 3e-40
Identities = 47/212 (22%), Positives = 95/212 (44%), Gaps = 14/212 (6%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
IQ++ + + K ++ ++ L + + + +LG NG+GK+T + + GL+ P +G+
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFP-ELTVREHLEMFAVLKGVKEELLESVVAEM 678
+ G + +IR + + +TV + + ++ LKG+ +L EM
Sbjct: 60 IFINGMEVR----KIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDL----FLEM 111
Query: 679 VDEVGLADKV-NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLI 737
+ + L +++ + LS G + +AL ++V LDEP +D + + I
Sbjct: 112 LKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYI 171
Query: 738 KKIKKGRIILLTTHSMDEAEELGDRIAIMANG 769
K+ K +L TH +D + A G
Sbjct: 172 KEYGKE--GILVTHELDMLNLYKEYKAYFLVG 201
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 8e-39
Identities = 60/225 (26%), Positives = 113/225 (50%), Gaps = 14/225 (6%)
Query: 560 IQIRKLHKVYATKRGNCC-AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTG 618
I++ + ++ A+ ++ L + E + L + G+ G+GKST + ++ GLI PT+G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 619 DALVFGKNITADMDEIRKGLGVCPQY--DILFPELTVREHLEMFAVL-KGVKEELLESVV 675
D L G+ EIR+ +G+ QY D F V + + FAV + + V
Sbjct: 63 DVLYDGERK--KGYEIRRNIGIAFQYPEDQFF-AERVFDEV-AFAVKNFYPDRDPVPL-V 117
Query: 676 AEMVDEVGLADKVNIVVRA---LSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRL 732
+ ++ VGL D + R LSGG KR++++ ++ + ++ILDEP G+D
Sbjct: 118 KKAMEFVGL-DFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTD 176
Query: 733 TWQLIKKIKK-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
++++K K G+ ++L +H ++ DR+ ++ G G+
Sbjct: 177 LLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGT 221
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 6e-38
Identities = 59/278 (21%), Positives = 110/278 (39%), Gaps = 22/278 (7%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
I + N+ ++ G K A+ +++ + GEC G G+GK+T L +++G PT
Sbjct: 3 IEVVNVSHIFHRG-TPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 1525 GTAFIFGKDIRSDPKAARRLIGYCPQF-DALLEYLTVQEHLELYARIKGVAEYRMDDVVM 1583
G G+ RR IG Q+ + V + + + +V
Sbjct: 62 GDVLYDGERK--KGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDR-DPVPLVK 118
Query: 1584 E--KLVEFDLLKHAKKPSFTLSGGNKRKLSVA--IAMIGDPPIVILDEPSTGMDPIAKRF 1639
+ + V D + F LSGG KR++++A I +P I+ILDEP G+D K
Sbjct: 119 KAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVH--EPDILILDEPLVGLDREGKTD 176
Query: 1640 MWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLE 1699
+ ++ + GKT VIL +H + R+ ++ G+ G+ +
Sbjct: 177 LLRIVEKWK-TLGKT-VILISHDIETVINHVDRVVVLEKGKKVFDGTRMEF---LEKYDP 231
Query: 1700 LEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDDL 1737
+ + +++ + LL+ +
Sbjct: 232 RFFTSK------MLVMRRLVLKGEDPFSMSDDELLERV 263
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 4e-34
Identities = 75/276 (27%), Positives = 131/276 (47%), Gaps = 14/276 (5%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I++ + KV+ A+N++ L + QI ++G +GAGKST I + L PT G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 620 ALVFGKNITA----DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVV 675
LV G+ +T ++ + R+ +G+ Q+ L TV ++ + L ++ ++ V
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 144
Query: 676 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIA--LIGDSKVVILDEPTSGMDPYSMRLT 733
E++ VGL DK + LSGG K++ + IA L + KV++ D+ TS +DP + R
Sbjct: 145 TELLSLVGLGDKHDSYPSNLSGGQKQR--VAIARALASNPKVLLCDQATSALDPATTRSI 202
Query: 734 WQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS--SLFLKHQYGVGYT 789
+L+K I + G ILL TH MD + + D +A+++NG L + +F + +
Sbjct: 203 LELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPL--A 260
Query: 790 LTLVKSAPDASAAADIVYRHIPSALCVSEVGTEITF 825
++S D R + F
Sbjct: 261 QKFIQSTLHLDIPEDYQERLQAEPFTDCVPMLRLEF 296
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 4e-27
Identities = 66/258 (25%), Positives = 128/258 (49%), Gaps = 18/258 (6%)
Query: 1449 QVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAG 1508
+ D +I L N+ KV+ G R+ A+++++ V AG+ +G +G +GAG
Sbjct: 9 HHHHSSGHIDDDDKHMIKLSNITKVFHQGTRT--IQALNNVSLHVPAGQIYGVIGASGAG 66
Query: 1509 KTTTLSMISGEEYPTDGTAFIFGKDI----RSDPKAARRLIGYCPQFDALLEYLTVQEHL 1564
K+T + ++ E PT+G+ + G+++ S+ ARR IG Q LL TV ++
Sbjct: 67 KSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNV 126
Query: 1565 ELYARIKGVAEYRMDDVVMEKLVEF-DLLKHAKK-PSFTLSGGNKRKLSVAIAMIGDPPI 1622
L + + + V E L+ L PS LSGG K+++++A A+ +P +
Sbjct: 127 ALPLELDNTPKDEVKRRVTE-LLSLVGLGDKHDSYPS-NLSGGQKQRVAIARALASNPKV 184
Query: 1623 VILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLR 1682
++ D+ ++ +DP R + E++ ++ R G T ++L TH M+ + +C + ++ G+L
Sbjct: 185 LLCDQATSALDPATTRSILELLKDINRRLGLT-ILLITHEMDVVKRICDCVAVISNGELI 243
Query: 1683 CIGS-------PQHLKTR 1693
+ P+ +
Sbjct: 244 EQDTVSEVFSHPKTPLAQ 261
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 1e-33
Identities = 53/257 (20%), Positives = 101/257 (39%), Gaps = 23/257 (8%)
Query: 514 HVSSAEVKINKKLSKEKECAFALDACEPVVEAISLDMKQQEVDGRCIQIRKLHKVYATKR 573
+A V IN L A + ++ + ++ ++ K K+
Sbjct: 222 KSYAARVGINNFLKGYLP-AENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLG 280
Query: 574 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDE 633
V++ E +I+ +LG NG GK+T +LVG I G + ++
Sbjct: 281 DFQLVVDNG--EAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYK--- 335
Query: 634 IRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLES--VVAEMVDEVGLADKVNIV 691
PQ + TV+++LE K+ L S E+ + L +
Sbjct: 336 --------PQRIFPNYDGTVQQYLE-----NASKDALSTSSWFFEEVTKRLNLHRLLESN 382
Query: 692 VRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLT 749
V LSGG +KL + L ++ + +LD+P+S +D + + IK++ + + +
Sbjct: 383 VNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFII 442
Query: 750 THSMDEAEELGDRIAIM 766
H + + + DRI +
Sbjct: 443 DHDLSIHDYIADRIIVF 459
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 6e-30
Identities = 56/245 (22%), Positives = 98/245 (40%), Gaps = 18/245 (7%)
Query: 1461 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE 1520
D + + + + + + GE G LG NG GKTT ++ GE
Sbjct: 259 DLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEI 318
Query: 1521 YPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDD 1580
+G+ + + Y PQ TVQ++LE ++ +
Sbjct: 319 TADEGSVTPEKQILS-----------YKPQRIFPNYDGTVQQYLENASKDALSTSSWFFE 367
Query: 1581 VVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1640
V ++L +L + + LSGG +KL +A + + + +LD+PS+ +D + +
Sbjct: 368 EVTKRL---NLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIV 424
Query: 1641 WEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVG--GQLRCIGSPQHLKTRFGNFL 1698
+ I R++ + I H ++ + RI + G + SP LKT FL
Sbjct: 425 AKAIKRVTRERKAVTFI-IDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFL 483
Query: 1699 -ELEV 1702
ELEV
Sbjct: 484 RELEV 488
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 4e-24
Identities = 52/211 (24%), Positives = 89/211 (42%), Gaps = 28/211 (13%)
Query: 579 VNSLQL----TLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEI 634
VN +L T N IL +LG NG GK+T + +L G I P GD N DE+
Sbjct: 11 VNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGD-----PNSKVGKDEV 65
Query: 635 RKGLGVCPQYDI-----------LFPELTVREHLEMFAVLKGVKEELLESV-----VAEM 678
K +I L ++ LKG E+L + E+
Sbjct: 66 LKRF---RGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEV 122
Query: 679 VDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIK 738
+ + + + N LSGG ++L + +L+ ++ V I D+P+S +D + I+
Sbjct: 123 KELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIR 182
Query: 739 KIKKGRIILLTTHSMDEAEELGDRIAIMANG 769
++ K + +++ H + + L D I I+
Sbjct: 183 ELLKNKYVIVVDHDLIVLDYLTDLIHIIYGE 213
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 9e-20
Identities = 44/206 (21%), Positives = 77/206 (37%), Gaps = 33/206 (16%)
Query: 1493 VQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT-------------------AFIFGKD 1533
+ G LG NG GKTT L +++GE P G F +
Sbjct: 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKE- 80
Query: 1534 IRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK 1593
+ S+ I Y + ++L + + + + E ++
Sbjct: 81 LYSNELKIVHKIQY---VEYASKFLKGTVN-------EILTKIDERGKKDEVKELLNMTN 130
Query: 1594 HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGK 1653
K + LSGG ++L VA +++ + + I D+PS+ +D + M + I L + K
Sbjct: 131 LWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIREL--LKNK 188
Query: 1654 TAVILTTHSMNEAQALCTRIGIMVGG 1679
VI+ H + L I I+ G
Sbjct: 189 Y-VIVVDHDLIVLDYLTDLIHIIYGE 213
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 2e-31
Identities = 51/266 (19%), Positives = 101/266 (37%), Gaps = 27/266 (10%)
Query: 514 HVSSAEVKINKKLSKEKECAFALDACEPVVEAISLDMKQQEVDGRCIQIRKLHKVYATKR 573
+S IN L E + I+ + + D R K
Sbjct: 306 LPASVREGINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSA---SRAFSYPSLKKT 362
Query: 574 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDE 633
+N + +++IL ++G NG GK+T I +L G + P G +
Sbjct: 363 QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEG--------------Q 408
Query: 634 IRKGLGVC--PQYDILFPELTVREHLEMFAVLKGVKEELL-ESVVAEMVDEVGLADKVNI 690
L V PQ TVR+ K ++ + L ++V + + D ++
Sbjct: 409 DIPKLNVSMKPQKIAPKFPGTVRQLFF-----KKIRGQFLNPQFQTDVVKPLRIDDIIDQ 463
Query: 691 VVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI--KKGRIILL 748
V+ LSGG +++++ +AL + + ++DEP++ +D + ++I++ + +
Sbjct: 464 EVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFI 523
Query: 749 TTHSMDEAEELGDRIAIMANGSLKCC 774
H A L D++ + K
Sbjct: 524 VEHDFIMATYLADKVIVFEGIPSKNA 549
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 1e-28
Identities = 50/234 (21%), Positives = 91/234 (38%), Gaps = 19/234 (8%)
Query: 1468 RNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTA 1527
+ YP K++ ++ E +G NG GKTT + +++G P +G
Sbjct: 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQ- 408
Query: 1528 FIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLV 1587
I ++ P+ I TV++ R + + DV ++ L
Sbjct: 409 DIPKLNVSMKPQK----IAPKFP-------GTVRQLFFKKIRGQFLNPQFQTDV-VKPL- 455
Query: 1588 EFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRL 1647
+ + LSGG +++++ +A+ I ++DEPS +D + +VI R
Sbjct: 456 --RIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRF 513
Query: 1648 STRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCI--GSPQHLKTRFGNFLE 1699
KTA I H A L ++ + G + +P+ L T FL+
Sbjct: 514 ILHNKKTAFI-VEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLK 566
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 3e-26
Identities = 41/201 (20%), Positives = 82/201 (40%), Gaps = 16/201 (7%)
Query: 584 LTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT----ADMDEIRK--- 636
T Q+L L+G NG GKST + +L G P G + E++
Sbjct: 98 PTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFT 157
Query: 637 -------GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVN 689
+ PQY P ++ ++ L ++ E V + + L + +
Sbjct: 158 KMLEDDIKAIIKPQYVDNIPR-AIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLK 216
Query: 690 IVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK-GRIILL 748
+ LSGG ++ ++G++ + ++ V + DEP+S +D Q+I+ + + ++
Sbjct: 217 RDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVIC 276
Query: 749 TTHSMDEAEELGDRIAIMANG 769
H + + L D + I+
Sbjct: 277 VEHDLSVLDYLSDFVCIIYGV 297
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 4e-21
Identities = 49/256 (19%), Positives = 95/256 (37%), Gaps = 34/256 (13%)
Query: 1465 IYLRNLRKVYPGG--KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1522
I + NL R A + + G+ G +GTNG GK+T L +++G++ P
Sbjct: 70 IQIINLPTNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKP 129
Query: 1523 TDGTAFI-------------------FGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEH 1563
G F K + D KA + PQ+ + ++
Sbjct: 130 NLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIK-----PQYVDNIP-RAIKGP 183
Query: 1564 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1623
++ + + + + V + L K+ LSGG ++ ++ ++ + + +
Sbjct: 184 VQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVY 243
Query: 1624 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVG----- 1678
+ DEPS+ +D + ++I L K VI H ++ L + I+ G
Sbjct: 244 MFDEPSSYLDVKQRLNAAQIIRSL-LAPTKY-VICVEHDLSVLDYLSDFVCIIYGVPSVY 301
Query: 1679 GQLRCIGSPQHLKTRF 1694
G + S + F
Sbjct: 302 GVVTLPASVREGINIF 317
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 8e-31
Identities = 49/210 (23%), Positives = 99/210 (47%), Gaps = 16/210 (7%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT-ADMDEI-R 635
A++ + +++ + + ++G NG+GKST I+++ G + G K+IT + E+
Sbjct: 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 81
Query: 636 KGLGVCPQYDILFPELTVRE------HLEMFAVLKGV-------KEELLESVVAEMVDEV 682
G+ Q E+TV E + L + KEE + ++++ +
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 683 GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK- 741
L+ + LSGG + + +G AL+ + K++++DEP +G+ P + + ++K
Sbjct: 142 KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA 201
Query: 742 KGRIILLTTHSMDEAEELGDRIAIMANGSL 771
KG L+ H +D D + +M NG +
Sbjct: 202 KGITFLIIEHRLDIVLNYIDHLYVMFNGQI 231
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 9e-28
Identities = 47/241 (19%), Positives = 98/241 (40%), Gaps = 23/241 (9%)
Query: 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1522
I+ N+ K + G + A+ ++ SV G+ +G NG+GK+T +++I+G
Sbjct: 6 EILRTENIVKYF-GEFK-----ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA 59
Query: 1523 TDGTAFIFGKDIRSDP--KAARRLIGYCPQFDALLEYLTVQE------HLELYARIKGV- 1573
+G + KDI + + I Q L+ +TV E + + +
Sbjct: 60 DEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLF 119
Query: 1574 ------AEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDE 1627
E M + + L L + + LSGG + + + A++ +P ++++DE
Sbjct: 120 YKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDE 179
Query: 1628 PSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1687
P G+ P ++ + L + ++ H ++ + +M GQ+ G
Sbjct: 180 PIAGVAPGLAHDIFNHVLEL--KAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 237
Query: 1688 Q 1688
+
Sbjct: 238 E 238
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 2e-29
Identities = 43/216 (19%), Positives = 89/216 (41%), Gaps = 20/216 (9%)
Query: 1483 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1542
+ L+ V+AGE +G NGAGK+T L+ ++G G+ G+ + +
Sbjct: 13 STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKL 71
Query: 1543 -RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFT 1601
Y Q V +L L + +++ + L + +
Sbjct: 72 ALHRAYLSQQQTPPFATPVWHYLTL-----HQHDKTRTELLNDVAGALALDDKLGRSTNQ 126
Query: 1602 LSGGNKRKLSVAIAMI---------GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1652
LSGG ++ V +A + +++LDEP +D + + +++S L ++QG
Sbjct: 127 LSGGEWQR--VRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL-SQQG 183
Query: 1653 KTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1688
+++++H +N R ++ GG++ G +
Sbjct: 184 LA-IVMSSHDLNHTLRHAHRAWLLKGGKMLASGRRE 218
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 38/207 (18%), Positives = 85/207 (41%), Gaps = 15/207 (7%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 637
+ L + +IL L+G NGAGKST ++ + G+ G G+ + A ++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALH 74
Query: 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSG 697
Q V +L + ++ ++ ++ + L DK+ LSG
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTL-----HQHDKTRTELLNDVAGALALDDKLGRSTNQLSG 129
Query: 698 GMKRKLSLGIAL-------IGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-KKGRIILLT 749
G +++ L + ++++LDEP + +D +++ + ++G I+++
Sbjct: 130 GEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMS 189
Query: 750 THSMDEAEELGDRIAIMANGSLKCCGS 776
+H ++ R ++ G + G
Sbjct: 190 SHDLNHTLRHAHRAWLLKGGKMLASGR 216
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 5e-29
Identities = 46/199 (23%), Positives = 88/199 (44%), Gaps = 20/199 (10%)
Query: 571 TKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD 630
K + + + +++ ++G NG GK+T + ML G+ PT G + D
Sbjct: 364 VKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK-------VEWD 416
Query: 631 MDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLES-VVAEMVDEVGLADKVN 689
+ K PQY E TV E L K +L + E++ +G+ D +
Sbjct: 417 LTVAYK-----PQYIKAEYEGTVYELLS-----KIDSSKLNSNFYKTELLKPLGIIDLYD 466
Query: 690 IVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI--KKGRIIL 747
V LSGG +++++ L+ D+ + +LDEP++ +D + I+ + K + L
Sbjct: 467 RNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 526
Query: 748 LTTHSMDEAEELGDRIAIM 766
+ H + + + DR+ +
Sbjct: 527 VVEHDVLMIDYVSDRLIVF 545
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 3e-26
Identities = 52/228 (22%), Positives = 90/228 (39%), Gaps = 19/228 (8%)
Query: 1474 YPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKD 1533
YP + + ++ GE G +G NG GKTT + M++G E PT+G
Sbjct: 360 YPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT- 418
Query: 1534 IRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK 1593
+ Y PQ+ TV E L K + + ++ L ++
Sbjct: 419 -----------VAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTEL----LKPLGIID 463
Query: 1594 HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGK 1653
+ LSGG +++++A ++ D I +LDEPS +D + + I L + K
Sbjct: 464 LYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK 523
Query: 1654 TAVILTTHSMNEAQALCTRIGIMVGGQLRC--IGSPQHLKTRFGNFLE 1699
TA++ H + + R+ + G R P ++ FL
Sbjct: 524 TALV-VEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREGMNRFLA 570
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 97.8 bits (244), Expect = 1e-20
Identities = 43/205 (20%), Positives = 91/205 (44%), Gaps = 23/205 (11%)
Query: 579 VNSLQL----TLYENQILALLGHNGAGKSTTISMLVGLIPP------TTGDALVFGKNIT 628
VN+ L + + ++ ++G NG GK+T + +L G + P + D ++
Sbjct: 103 VNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGN 162
Query: 629 ADMDEIRKGLG------VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEV 682
+ + V PQY L P+ + V + +K+ E+V E+
Sbjct: 163 ELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGK------VRELLKKVDEVGKFEEVVKEL 216
Query: 683 GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK 742
L + ++ + LSGG +++++ AL+ + DEP+S +D ++I+++
Sbjct: 217 ELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN 276
Query: 743 -GRIILLTTHSMDEAEELGDRIAIM 766
G+ +L+ H + + L D I ++
Sbjct: 277 EGKAVLVVEHDLAVLDYLSDVIHVV 301
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 2e-20
Identities = 52/229 (22%), Positives = 88/229 (38%), Gaps = 22/229 (9%)
Query: 1465 IYLRNLRKVYPGG--KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGE--- 1519
I + NL + R V V+ G G +G NG GKTT + +++G+
Sbjct: 84 ISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIP 143
Query: 1520 ---EYPTDGTAFIFGKDIRSDPKAARRLIGYC------PQFDALLEYLTVQEHLELYARI 1570
E I RL PQ+ LL + EL ++
Sbjct: 144 NLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV 203
Query: 1571 KGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPST 1630
+ ++VV E +L + LSGG +++++A A++ DEPS+
Sbjct: 204 D--EVGKFEEVVK----ELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSS 257
Query: 1631 GMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGG 1679
+D + + VI RL+ +GK V++ H + L I ++ G
Sbjct: 258 YLDIRQRLKVARVIRRLA-NEGKA-VLVVEHDLAVLDYLSDVIHVVYGE 304
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 7e-29
Identities = 67/263 (25%), Positives = 130/263 (49%), Gaps = 27/263 (10%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1523
+I + +L + + ++ +L+ V++GE F LG GAGKT L +I+G P
Sbjct: 1 MIEIESLSRKWKN-------FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD 53
Query: 1524 DGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVM 1583
G + GKD+ + I + Q +L ++ V+++LE R+K + + V+
Sbjct: 54 SGRILLDGKDVTDLS-PEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD---PKRVL 109
Query: 1584 E--KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMW 1641
+ + ++ + L + P TLSGG ++++++A A++ +P I++LDEP + +DP +
Sbjct: 110 DTARDLKIEHLLD-RNPL-TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAR 167
Query: 1642 EVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL----KTRF--- 1694
E++S L + T V+ TH EA+ + RI +++ G+L +G P+ +
Sbjct: 168 EMLSVLHKKNKLT-VLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVAS 226
Query: 1695 ----GNFLELEVKPTEVSSVDLE 1713
N L+ V E + +
Sbjct: 227 FVGFENVLKGRVISAEQGLLRIR 249
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 7e-23
Identities = 52/218 (23%), Positives = 106/218 (48%), Gaps = 23/218 (10%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I+I L + + ++++L L + + +LG GAGK+ + ++ G P +G
Sbjct: 2 IEIESLSRKWKNF-----SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR 56
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREH----LEMFAVLKGV-KEELLESV 674
L+ GK++T D+ + + Q LFP + V+++ + M K + +
Sbjct: 57 ILLDGKDVT-DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRM----KKIKDPK----R 107
Query: 675 VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTW 734
V + ++ + ++ LSGG +++++L AL+ + K+++LDEP S +D +
Sbjct: 108 VLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALD-PRTQENA 166
Query: 735 QL-IKKIKK--GRIILLTTHSMDEAEELGDRIAIMANG 769
+ + + K +L TH EA + DRIA++ +G
Sbjct: 167 REMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDG 204
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 2e-28
Identities = 47/199 (23%), Positives = 88/199 (44%), Gaps = 20/199 (10%)
Query: 571 TKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD 630
K + + + +++ ++G NG GK+T + ML G+ PT G I D
Sbjct: 294 VKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK-------IEWD 346
Query: 631 MDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESV-VAEMVDEVGLADKVN 689
+ K PQY E TV E L K +L + E++ +G+ D +
Sbjct: 347 LTVAYK-----PQYIKADYEGTVYELLS-----KIDASKLNSNFYKTELLKPLGIIDLYD 396
Query: 690 IVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI--KKGRIIL 747
V LSGG +++++ L+ D+ + +LDEP++ +D + I+ + K + L
Sbjct: 397 REVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 456
Query: 748 LTTHSMDEAEELGDRIAIM 766
+ H + + + DR+ +
Sbjct: 457 VVEHDVLMIDYVSDRLMVF 475
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 1e-23
Identities = 52/234 (22%), Positives = 92/234 (39%), Gaps = 19/234 (8%)
Query: 1468 RNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTA 1527
R YP + + ++ GE G +G NG GKTT + M++G E PT+G
Sbjct: 284 RETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKI 343
Query: 1528 FIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLV 1587
+ Y PQ+ TV E L K + + ++ L
Sbjct: 344 EWDLT------------VAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTEL----LK 387
Query: 1588 EFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRL 1647
++ + LSGG +++++A ++ D I +LDEPS +D + + I L
Sbjct: 388 PLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 447
Query: 1648 STRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRC--IGSPQHLKTRFGNFLE 1699
+ KTA+++ H + + R+ + G + P ++ FL
Sbjct: 448 MEKNEKTALVV-EHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMREGMNRFLA 500
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 9e-22
Identities = 44/220 (20%), Positives = 95/220 (43%), Gaps = 19/220 (8%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP---- 615
+ +L + + G V + E ++ ++G NG GKST + +L G + P
Sbjct: 18 SHMEQLEEDCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCG 77
Query: 616 --TTGDALVFGKNITADMDEIRKGLGVC------PQYDILFPELTVREHLEMFAVLKGVK 667
+ D ++ + K PQY L P+ + V++ +K
Sbjct: 78 DNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGK------VIELLK 131
Query: 668 EELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP 727
+ + E+V + L + + ++ LSGG +++++ AL+ ++ DEP+S +D
Sbjct: 132 KADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDI 191
Query: 728 YSMRLTWQLIKKIKK-GRIILLTTHSMDEAEELGDRIAIM 766
+ I+++ + G+ +L+ H + + L D I ++
Sbjct: 192 RQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVV 231
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 2e-21
Identities = 57/295 (19%), Positives = 111/295 (37%), Gaps = 39/295 (13%)
Query: 1464 IIYLRNLRK--VYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY 1521
++ L + V+ G + V V+ G G +G NG GK+T + +++G+
Sbjct: 17 RSHMEQLEEDCVHRYGVNA----FVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLI 72
Query: 1522 P------TDGTAFIFGKDIRSDPKAARRLIGYC------PQFDALLEYLTVQEHLELYAR 1569
P I +L PQ+ L+ + +EL +
Sbjct: 73 PNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKK 132
Query: 1570 --IKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDE 1627
G E + + +E ++E ++ LSGG +++++A A++ + DE
Sbjct: 133 ADETGKLEEVVKALELENVLEREI--------QHLSGGELQRVAIAAALLRNATFYFFDE 184
Query: 1628 PSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVG--GQLRCIG 1685
PS+ +D + I RLS +GK+ V++ H + L I ++ G G
Sbjct: 185 PSSYLDIRQRLNAARAIRRLS-EEGKS-VLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFS 242
Query: 1686 SPQHLKTRFGNFLE-------LEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSL 1733
P+ + FL + +P E+ + +I +E + P +
Sbjct: 243 QPKGTRNGINEFLRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDY 297
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 2e-28
Identities = 70/270 (25%), Positives = 125/270 (46%), Gaps = 26/270 (9%)
Query: 1459 SVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG 1518
+ I + K+YPGG +V ++F ++ GE G LG +G+GKTT L +I+G
Sbjct: 9 HHGSMTIEFVGVEKIYPGGA-----RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAG 63
Query: 1519 EEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRM 1578
E PT G +I GK + P +R +G Q AL +++TV +++ R K V + M
Sbjct: 64 LERPTKGDVWIGGKRVTDLP-PQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEM 122
Query: 1579 DDVVME--KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIA 1636
D V E + + + + + P LSGG ++++++A A+ P +++ DEP +D
Sbjct: 123 DARVRELLRFMRLESYAN-RFPH-ELSGGQQQRVALARALAPRPQVLLFDEPFAAID--T 178
Query: 1637 K--RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL---- 1690
+ R + + ++ G T + TH EA + R+ ++ G + G+P+ +
Sbjct: 179 QIRRELRTFVRQVHDEMGVT-SVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237
Query: 1691 KTRF-------GNFLELEVKPTEVSSVDLE 1713
T F N V+ +
Sbjct: 238 GTLFVASFIGESNVWTRAVQNGRIEVAGAA 267
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 3e-25
Identities = 58/217 (26%), Positives = 113/217 (52%), Gaps = 16/217 (7%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I+ + K+Y G +V + + E +++ LLG +G+GK+T + ++ GL PT GD
Sbjct: 15 IEFVGVEKIYP---GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGD 71
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREH----LEMFAVLKGVKEELLESVV 675
+ GK +T D+ ++ +G+ Q LF +TV ++ L K V ++ +++ V
Sbjct: 72 VWIGGKRVT-DLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLRE----KRVPKDEMDARV 126
Query: 676 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ 735
E++ + L N LSGG +++++L AL +V++ DEP + +D +R +
Sbjct: 127 RELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAID-TQIRRELR 185
Query: 736 L-IKKIKK--GRIILLTTHSMDEAEELGDRIAIMANG 769
++++ G + TH +EA E+ DR+ ++ G
Sbjct: 186 TFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEG 222
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 114 bits (289), Expect = 2e-28
Identities = 57/257 (22%), Positives = 108/257 (42%), Gaps = 31/257 (12%)
Query: 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY 1521
N + + NL Y L F + G+ LG NG GK+T L ++ G
Sbjct: 2 NKALSVENLGFYYQAEN-----FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR 56
Query: 1522 PTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLEL--YARIKGVAEYRMD 1579
P G ++ + IG+ PQF + +V + + + I A+ +
Sbjct: 57 PIQGKIEVY------------QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSH 104
Query: 1580 D--VVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK 1637
D V M+ L +L AK+ +LSGG ++ + +A A+ + +++LDEP++ +D +
Sbjct: 105 DYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQ 164
Query: 1638 RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP------QHLK 1691
+ ++ L+ Q T V+ TTH N+ A+ + ++ + G ++L
Sbjct: 165 DIVLSLLIDLAQSQNMT-VVFTTHQPNQVVAIANKTLLLNKQNFKF-GETRNILTSENLT 222
Query: 1692 TRFGNFLELEVKPTEVS 1708
F L + + +
Sbjct: 223 ALFH--LPMFEQQAQYK 237
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 6e-25
Identities = 50/225 (22%), Positives = 96/225 (42%), Gaps = 31/225 (13%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+ + L Y + L L + ILA+LG NG GKST + +L+G+ P G
Sbjct: 5 LSVENLGFYYQAEN---FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGK 61
Query: 620 ALVFGKNITADMDEIRKGLGVCPQ-YDILFPELTVRE--------HLEMFAVLKGVKEEL 670
E+ + +G PQ + F +V + H+ FA K +
Sbjct: 62 I------------EVYQSIGFVPQFFSSPFA-YSVLDIVLMGRSTHINTFAKPK--SHD- 105
Query: 671 LESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSM 730
V + +D + L +LSGG ++ + + A+ + K+++LDEPTS +D +
Sbjct: 106 -YQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQ 164
Query: 731 RLTWQLIKKI--KKGRIILLTTHSMDEAEELGDRIAIMANGSLKC 773
+ L+ + + ++ TTH ++ + ++ ++ + K
Sbjct: 165 DIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKF 209
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 5e-28
Identities = 65/276 (23%), Positives = 106/276 (38%), Gaps = 37/276 (13%)
Query: 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY 1521
A +++ +L K + ++ ++ S+ GE +G +G GKTT L ++G E
Sbjct: 2 TAALHIGHLSKSF------QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ 55
Query: 1522 PTDGTAFIFGKDIRSDPK---AARRLIGYCPQFDALLEYLTVQEH----LELYARIKGVA 1574
P G + GK I S R +GY Q L +LTV + L
Sbjct: 56 PDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGL----GNGKGR 111
Query: 1575 EYRMDDVVMEKLVEFDLLKHAK-KPSFTLSGGNK-RKLSVAIA--MIGDPPIVILDEPST 1630
+ + L + + A P LSGG + R A+A + DP +++LDEP +
Sbjct: 112 TAQERQRIEAMLELTGISELAGRYPH-ELSGGQQQR---AALARALAPDPELILLDEPFS 167
Query: 1631 GMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
+D +R + E + GK+A + +H EA RI +M G++ SP L
Sbjct: 168 ALDEQLRRQIREDMIAALRANGKSA-VFVSHDREEALQYADRIAVMKQGRILQTASPHEL 226
Query: 1691 ----KTRF-------GNFLELEVKPTEVSSVDLEDL 1715
G + + L L
Sbjct: 227 YRQPADLDAALFIGEGIVFPAALNADGTADCRLGRL 262
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 9e-25
Identities = 58/220 (26%), Positives = 103/220 (46%), Gaps = 19/220 (8%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+ I L K + N +N + L+L +IL ++G +G GK+T + L G P +G+
Sbjct: 5 LHIGHLSKSF----QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGE 60
Query: 620 ALVFGKNITADMDEI---RKGLGVCPQYDILFPELTVREH----LEMFAVLKGVKEELLE 672
+ GK I + + + LG Q +LFP LTV + L +
Sbjct: 61 ISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGN----GKGRTAQER 116
Query: 673 SVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRL 732
+ M++ G+++ LSGG +++ +L AL D ++++LDEP S +D +R
Sbjct: 117 QRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALD-EQLRR 175
Query: 733 TWQL-IKKIKK--GRIILLTTHSMDEAEELGDRIAIMANG 769
+ + + G+ + +H +EA + DRIA+M G
Sbjct: 176 QIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQG 215
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 3e-26
Identities = 59/239 (24%), Positives = 100/239 (41%), Gaps = 17/239 (7%)
Query: 1478 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD 1537
KR + LG GAGK+ L +I+G P G + G DI
Sbjct: 9 KRLGNFRLNVDFE---MGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL 65
Query: 1538 PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKK 1597
P RR IG+ PQ AL +L+V ++ Y ++ V D V E + + +
Sbjct: 66 P-PERRGIGFVPQDYALFPHLSVYRNIA-YG-LRNVERVERDRRVREMAEKLGIAHLLDR 122
Query: 1598 PSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVI 1657
LSGG ++++++A A++ P +++LDEP + +D K + E + + ++
Sbjct: 123 KPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVP-IL 181
Query: 1658 LTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL---KTRF-------GNFLELEVKPTE 1706
TH + EA L + +M+ G++ G + L K N L K +
Sbjct: 182 HVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLSARNLLLKVSKILD 240
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 9e-25
Identities = 63/207 (30%), Positives = 109/207 (52%), Gaps = 11/207 (5%)
Query: 567 KVYATKR-GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGK 625
KV A KR GN ++ LLG GAGKS + ++ G++ P G+ + G
Sbjct: 4 KVRAEKRLGNFRLNVDFEM---GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGA 60
Query: 626 NITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA 685
+IT + R+G+G PQ LFP L+V ++ + L+ V+ + V EM +++G+A
Sbjct: 61 DIT-PLPPERRGIGFVPQDYALFPHLSVYRNIA-YG-LRNVERVERDRRVREMAEKLGIA 117
Query: 686 DKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQL-IKKIKK-- 742
++ LSGG +++++L AL+ ++++LDEP S +D + ++ +++
Sbjct: 118 HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVD-LKTKGVLMEELRFVQREF 176
Query: 743 GRIILLTTHSMDEAEELGDRIAIMANG 769
IL TH + EA L D +A+M NG
Sbjct: 177 DVPILHVTHDLIEAAMLADEVAVMLNG 203
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 1e-25
Identities = 85/345 (24%), Positives = 157/345 (45%), Gaps = 48/345 (13%)
Query: 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1522
I ++N+ KV+ GK VA+ ++ +++ GE FG LG +GAGKTT + +I+G + P
Sbjct: 2 VRIIVKNVSKVFKKGKV----VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP 57
Query: 1523 TDGTAFIFGKDIRSDPKA----ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRM 1578
+ G + + + S+ K R IG Q AL LT E++ +++ +
Sbjct: 58 STGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEI 117
Query: 1579 DDVVME--KLVEF-DLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPI 1635
V E K+++ +L H P LSG ++++++A A++ DP +++LDEP + +D
Sbjct: 118 RKRVEEVAKILDIHHVLNH--FPR-ELSGAQQQRVALARALVKDPSLLLLDEPFSNLD-- 172
Query: 1636 AK-RF-MWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL--- 1690
A+ R ++ + +R G T +++ +H + A+ R+G++V G+L +G P+ L
Sbjct: 173 ARMRDSARALVKEVQSRLGVT-LLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
Query: 1691 -KTRF-----G--NFLELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLL-----DDL 1737
+ G N LE +V V L F + + +D+
Sbjct: 232 PVSIQVASLIGEINELEGKVTNEGVVIGSLR----------FPVSVSSDRAIIGIRPEDV 281
Query: 1738 EVCIGGIDSISSENATAAEISLSQEM---LLIVGRWLGNEERIKT 1779
++ I S ++ + I L +EE I T
Sbjct: 282 KLSKDVIKDDSWILVGKGKVKVIGYQGGLFRITITPLDSEEEIFT 326
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 1e-19
Identities = 61/235 (25%), Positives = 119/235 (50%), Gaps = 32/235 (13%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I ++ + KV+ K+G A++++ + + + +LG +GAGK+T + ++ GL P+TG+
Sbjct: 4 IIVKNVSKVF--KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 620 ALVFGKNITADMDEIRKGLGVCPQY-DI--------LFPELTVREHLEMFAV-LKGV-KE 668
+ + + L V P+ I L+P LT E++ F + + KE
Sbjct: 62 LYFDDRLVAS-----NGKLIVPPEDRKIGMVFQTWALYPNLTAFENIA-FPLTNMKMSKE 115
Query: 669 ELLESV--VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 726
E+ + V VA+++D + + R LSG +++++L AL+ D +++LDEP S +D
Sbjct: 116 EIRKRVEEVAKILDIHHVLNH---FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
Query: 727 P---YSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
S R L+K+++ G +L+ +H + + DR+ ++ G L G
Sbjct: 173 ARMRDSARA---LVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGK 224
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 1e-24
Identities = 65/220 (29%), Positives = 114/220 (51%), Gaps = 23/220 (10%)
Query: 561 QIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDA 620
+++ LH Y G A+ + L + QI+ L+G NGAGK+TT+S + GL+ G
Sbjct: 8 EVQSLHVYY----GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 621 LVFGKNITA-DMDEI-RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEM 678
+ G++IT I R G+ + P+ +FPELTV E+L M A + KE +
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEG-----IKRD 118
Query: 679 VDEV-----GLADKVNIVVRALSGG---MKRKLSLGIALIGDSKVVILDEPTSGMDPYSM 730
++ + L +++ + LSGG M L++G AL+ K++++DEP+ G+ P +
Sbjct: 119 LEWIFSLFPRLKERLKQLGGTLSGGEQQM---LAIGRALMSRPKLLMMDEPSLGLAPILV 175
Query: 731 RLTWQLIKKIKK-GRIILLTTHSMDEAEELGDRIAIMANG 769
+++I+KI + G ILL + A ++ ++ G
Sbjct: 176 SEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETG 215
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 100 bits (253), Expect = 1e-23
Identities = 67/230 (29%), Positives = 107/230 (46%), Gaps = 18/230 (7%)
Query: 1467 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1526
+++L Y A A+ + V G+ +G NGAGKTTTLS I+G G
Sbjct: 9 VQSLHVYY------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGK 62
Query: 1527 AFIFGKDIRSDP--KAARRLIGYCPQFDALLEYLTVQEHLEL--YARIKGVAEYRMDDVV 1582
G+DI + P R I P+ + LTV E+L + Y R K + D
Sbjct: 63 IIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR-KDKEGIKRD--- 118
Query: 1583 MEKLVE-FDLLKH-AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1640
+E + F LK K+ TLSGG ++ L++ A++ P ++++DEPS G+ PI +
Sbjct: 119 LEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178
Query: 1641 WEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
+EVI ++ Q T ++L + A + ++ GQ+ G L
Sbjct: 179 FEVIQKI--NQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASEL 226
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 6e-22
Identities = 55/228 (24%), Positives = 111/228 (48%), Gaps = 20/228 (8%)
Query: 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY 1521
I+ N++KV G + + ++ SV+ GE +G +G+GK+T L ++ +
Sbjct: 2 AEILRAENIKKVIRGYE------ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA 55
Query: 1522 PTDGTAFIFGKDIR--SDPKAA---RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEY 1576
PT+G F+ GK++ ++ + + R +G+ QF L+ LT E++ + G +
Sbjct: 56 PTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKK 115
Query: 1577 RMDDVVMEKLVEFDL---LKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMD 1633
+ L E L L KP LSGG ++++++A A+ +P ++ DEP+ +D
Sbjct: 116 EAKERGEYLLSELGLGDKLSR--KPY-ELSGGEQQRVAIARALANEPILLFADEPTGNLD 172
Query: 1634 PIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
+ + ++ +++ G + +++ TH A L R M G++
Sbjct: 173 SANTKRVMDIFLKIN-EGGTS-IVMVTHERELA-ELTHRTLEMKDGKV 217
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 7e-21
Identities = 55/219 (25%), Positives = 108/219 (49%), Gaps = 13/219 (5%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
++ + KV + + L++ + + ++++G +G+GKST + +L L PT G
Sbjct: 5 LRAENIKKVIRGYE----ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGK 60
Query: 620 ALVFGKNITADMDE-----IRKG-LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLES 673
+ GK + +E +R LG Q+ L PELT E++ + + G ++ +
Sbjct: 61 VFLEGKEV-DYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKE 119
Query: 674 VVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLT 733
++ E+GL DK++ LSGG ++++++ AL + ++ DEPT +D + +
Sbjct: 120 RGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRV 179
Query: 734 WQLIKKI-KKGRIILLTTHSMDEAEELGDRIAIMANGSL 771
+ KI + G I++ TH + AE R M +G +
Sbjct: 180 MDIFLKINEGGTSIVMVTHERELAEL-THRTLEMKDGKV 217
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 95.0 bits (237), Expect = 2e-21
Identities = 60/223 (26%), Positives = 120/223 (53%), Gaps = 25/223 (11%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I + +L K + G+ + + + + E +++ ++G +G+GKST + L L G+
Sbjct: 25 IDVHQLKKSF----GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGE 80
Query: 620 ALVFGKNITA---DMDEIRKGLGVCPQYDILFPELTVREHLEMFA--VLKGVKEELLESV 674
++ G N+ A +++++R+ +G+ Q LFP +TV ++ A ++ E E+
Sbjct: 81 IIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNI-TLAPMKVRKWPREKAEAK 139
Query: 675 VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTW 734
E++D+VGL DK + +LSGG +++++ AL + K+++ DEPTS +DP
Sbjct: 140 AMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDP------- 192
Query: 735 QLIKKI--------KKGRIILLTTHSMDEAEELGDRIAIMANG 769
+++ ++ +G +++ TH M A E+GDR+ M G
Sbjct: 193 EMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGG 235
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 2e-13
Identities = 65/258 (25%), Positives = 119/258 (46%), Gaps = 31/258 (12%)
Query: 1457 SGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMI 1516
GS +I + L+K + + + + ++ GE +G +G+GK+T L +
Sbjct: 17 RGSHMLQMIDVHQLKKSF------GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCL 70
Query: 1517 SGEEYPTDGTAFIFGKDIRSDPK---AARRLIGYCPQ-FDALLEYLTVQEHLELY-ARIK 1571
+ E +G I G ++++ R +G Q F+ L ++TV ++ L +++
Sbjct: 71 NLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFN-LFPHMTVLNNITLAPMKVR 129
Query: 1572 GVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIA----MIGDPPIVILDE 1627
+ + ME L + L A +LSGG ++ VAIA M +P I++ DE
Sbjct: 130 KWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQR--VAIARALAM--EPKIMLFDE 185
Query: 1628 PSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL------ 1681
P++ +DP + V+ +L+ +G T V++ TH M A+ + R+ M GG +
Sbjct: 186 PTSALDPEMVGEVLSVMKQLA-NEGMTMVVV-THEMGFAREVGDRVLFMDGGYIIEEGKP 243
Query: 1682 -RCIGSPQHLKTRFGNFL 1698
PQH +T+ FL
Sbjct: 244 EDLFDRPQHERTK--AFL 259
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 4e-20
Identities = 61/232 (26%), Positives = 117/232 (50%), Gaps = 23/232 (9%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKV-AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1522
++ L+N+ K Y G + + A+ ++ +++ GE +G +G+GK+T L++I + P
Sbjct: 1 MVKLKNVTKTYKMG---EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP 57
Query: 1523 TDGTAFIFGKDIR--SDPKAA---RRLIGYCPQFDALLEYLTVQEHLEL---YARIKGVA 1574
T+G +I D + R IG+ Q L+ LT E++EL + ++
Sbjct: 58 TEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMS 117
Query: 1575 EYRMDDVVMEKLVEFDL----LKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPST 1630
+E L +L H KP+ LSGG ++++++A A+ +PPI++ D+P T
Sbjct: 118 GEERRKRALECLKMAELEERFANH--KPN-QLSGGQQQRVAIARALANNPPIILADQP-T 173
Query: 1631 G-MDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
+D + +++ +L+ GKT V++ TH +N A RI + G++
Sbjct: 174 WALDSKTGEKIMQLLKKLNEEDGKT-VVVVTHDINVA-RFGERIIYLKDGEV 223
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 2e-16
Identities = 54/225 (24%), Positives = 114/225 (50%), Gaps = 20/225 (8%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
++++ + K Y A+ ++ L + E + ++++G +G+GKST ++++ L PT G+
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 620 ALVFGKNITADMDE-----IR-KGLG-VCPQYDILFPELTVREHLEM---FAVLKGVKEE 669
+ D+D+ IR +G V Q++ L P LT E++E+ F + E
Sbjct: 62 VYIDNIKT-NDLDDDELTKIRRDKIGFVFQQFN-LIPLLTALENVELPLIFKYRGAMSGE 119
Query: 670 LLESVVAEMVDEVGLADKV-NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPY 728
E + L ++ N LSGG ++++++ AL + +++ D+PT +D
Sbjct: 120 ERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSK 179
Query: 729 S----MRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANG 769
+ M+L +L + + G+ +++ TH ++ A G+RI + +G
Sbjct: 180 TGEKIMQLLKKLNE--EDGKTVVVVTHDINVARF-GERIIYLKDG 221
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 89.6 bits (223), Expect = 7e-19
Identities = 80/302 (26%), Positives = 141/302 (46%), Gaps = 45/302 (14%)
Query: 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1522
I L N+ K + A++++ ++ GE LG +G+GK+T L I+G P
Sbjct: 2 VEIKLENIVKKFGN------FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP 55
Query: 1523 TDGTAFIFGKDI-RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDV 1581
T G + KD+ PK R +G Q AL ++TV +++ ++ +D
Sbjct: 56 TSGKIYFDEKDVTELPPKD--RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKK 113
Query: 1582 VME--KLVEF-DLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK- 1637
V E K++ LL + P LSGG ++++++A A++ +P +++LDEP + +D A
Sbjct: 114 VREVAKMLHIDKLLN--RYPW-QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD--ALL 168
Query: 1638 RF-MWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL----KT 1692
R + + RL G T + TH EA A+ RI ++ G++ +G+P + K
Sbjct: 169 RLEVRAELKRLQKELGIT-TVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKY 227
Query: 1693 RF-----G----NFLELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDDL---EVC 1740
+F G NF+E +V+ + I ++ IP Q ++ + EV
Sbjct: 228 KFVGGFLGNPPMNFVEAKVE---------DGKLVITEKSKLPIPKQYVEIVKETGITEVI 278
Query: 1741 IG 1742
IG
Sbjct: 279 IG 280
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 6e-16
Identities = 62/228 (27%), Positives = 120/228 (52%), Gaps = 39/228 (17%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I++ + K + GN A+N++ L + + + +ALLG +G+GKST + + G+ PT+G
Sbjct: 4 IKLENIVKKF----GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59
Query: 620 ALVFGKNITADMDEIRKGLGVCPQY-DI--------LFPELTVREHLEMFAV-LKGV-KE 668
K++T + P+ ++ L+P +TV +++ F + L+ +E
Sbjct: 60 IYFDEKDVT----------ELPPKDRNVGLVFQNWALYPHMTVYKNIA-FPLELRKAPRE 108
Query: 669 ELLESV--VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 726
E+ + V VA+M+ L ++ LSGG ++++++ AL+ + +V++LDEP S +D
Sbjct: 109 EIDKKVREVAKMLHIDKLLNRYP---WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165
Query: 727 P---YSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANG 769
+R +K+++K G + TH EA + DRIA++ G
Sbjct: 166 ALLRLEVRAE---LKRLQKELGITTVYVTHDQAEALAMADRIAVIREG 210
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 84.9 bits (211), Expect = 6e-18
Identities = 55/232 (23%), Positives = 109/232 (46%), Gaps = 31/232 (13%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+ + LHK Y G + + L +++++G +G+GKST + + L P+ G
Sbjct: 7 LHVIDLHKRY----GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA 62
Query: 620 ALVFGKNIT--------------ADMDEIRKGLGVCPQYDILFPELTVREHLEMFA---V 662
+V G+NI + +R L + Q+ L+ +TV E++ M A V
Sbjct: 63 IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENV-MEAPIQV 121
Query: 663 LKGVKEELLESVVAEMVDEVGLADKVNIVV-RALSGGMKRKLSLGIALIGDSKVVILDEP 721
L K + + + +VG+ ++ LSGG ++++S+ AL + V++ DEP
Sbjct: 122 LGLSKHD-ARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEP 180
Query: 722 TSGMDPYSMRLTWQLIKKIKK----GRIILLTTHSMDEAEELGDRIAIMANG 769
TS +DP L ++++ +++ G+ +++ TH M A + + + G
Sbjct: 181 TSALDP---ELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQG 229
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 5e-08
Identities = 58/264 (21%), Positives = 121/264 (45%), Gaps = 51/264 (19%)
Query: 1461 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE 1520
+++ +L K Y + ++ +AG+ +G++G+GK+T L I+ E
Sbjct: 3 SENKLHVIDLHKRY------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE 56
Query: 1521 YPTDGTAFIFGKDIRSDPKAA--------------RRLIGYCPQFDALLEYLTVQEHL-E 1565
P++G + G++I R + Q L ++TV E++ E
Sbjct: 57 KPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME 116
Query: 1566 LYARIKGVAEYRMDDVVMEKLVEFDLL--KHAKKPSFTLSGGNKRKLSVAIA----MIGD 1619
++ G++++ + ++ L + + K P LSGG +++ V+IA M +
Sbjct: 117 APIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVH-LSGGQQQR--VSIARALAM--E 171
Query: 1620 PPIVILDEPSTGMDPIAKRFMWE-------VISRLSTRQGKTAVILTTHSMNEAQALCTR 1672
P +++ DEP++ +DP E ++ +L+ +GKT V++ TH M A+ + +
Sbjct: 172 PDVLLFDEPTSALDP-------ELVGEVLRIMQQLA-EEGKTMVVV-THEMGFARHVSSH 222
Query: 1673 IGIMVGGQLRCIGSPQHLKTRFGN 1696
+ + G++ G P+ + FGN
Sbjct: 223 VIFLHQGKIEEEGDPEQV---FGN 243
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 1e-17
Identities = 93/364 (25%), Positives = 155/364 (42%), Gaps = 56/364 (15%)
Query: 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1522
I + NL+K + AV ++F V+ GE LG +G GKTTTL M++G P
Sbjct: 2 PSIRVVNLKKYFGK------VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP 55
Query: 1523 TDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV 1582
T G + + +D R +G Q AL ++TV E++ R + +++ ++ V
Sbjct: 56 TSGEIYFDDVLV-NDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRV 114
Query: 1583 ME--KLVEF-DLLKHAKKPSFTLSGGNKRKLSVAI--AMIGDPPIVILDEPSTGMDPIAK 1637
+E + + +LL +KP+ LSGG +++ VA+ A++ P +++ DEP + +D A
Sbjct: 115 VEIARKLLIDNLLD--RKPT-QLSGGQQQR--VALARALVKQPKVLLFDEPLSNLD--AN 167
Query: 1638 -RF-MWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL----K 1691
R M I L G T + TH EA + +RI + G+L G+P + K
Sbjct: 168 LRMIMRAEIKHLQQELGIT-SVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPK 226
Query: 1692 TRF-----G----NFLELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDDLEVCIG 1742
F G NFL V +E+ I++ I + EV +G
Sbjct: 227 NMFVASFIGNPPTNFLRDFS-------VSVENKQTILKRDDVIIKLPEPVDVKLKEVVVG 279
Query: 1743 ------GIDSISSENATAAEISLSQEML----LIVGRWLGNEERIKTLISSSSSPDRIFG 1792
I EN+ + + E L ++ + E IK + +P G
Sbjct: 280 IRPEHCRISRERVENSIPGVVYVV-EPLGRDIIVNVK-TEKGEIIKVFGDTGKAPQP--G 335
Query: 1793 EQLS 1796
E +
Sbjct: 336 ENVF 339
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 5e-13
Identities = 62/228 (27%), Positives = 110/228 (48%), Gaps = 39/228 (17%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I++ L K + G AV+ + + + + +ALLG +G GK+TT+ ML G+ PT+G+
Sbjct: 4 IRVVNLKKYF----GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE 59
Query: 620 ALVFGKNITADMDEIRKGLGVCPQY-DI--------LFPELTVREHLEMFAV-LKGV-KE 668
+ + P+Y ++ L+P +TV E++ F + + + K+
Sbjct: 60 IYFDDVLVN----------DIPPKYREVGMVFQNYALYPHMTVFENIA-FPLRARRISKD 108
Query: 669 ELLESV--VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 726
E+ + V +A + L D+ LSGG +++++L AL+ KV++ DEP S +D
Sbjct: 109 EVEKRVVEIARKLLIDNLLDRKP---TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165
Query: 727 P---YSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANG 769
MR IK +++ G + TH EA + RIA+ G
Sbjct: 166 ANLRMIMRAE---IKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQG 210
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 3e-17
Identities = 77/236 (32%), Positives = 121/236 (51%), Gaps = 24/236 (10%)
Query: 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1522
+ L NL K + AV+ L +++ GE LG +G GKTTTL MI+G E P
Sbjct: 10 VEVKLENLTKRFGN------FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP 63
Query: 1523 TDGTAFIFGKDI-RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDV 1581
T+G + +D+ PK R I Q A+ ++TV E++ +IK + +D
Sbjct: 64 TEGRIYFGDRDVTYLPPKD--RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR 121
Query: 1582 VME--KLVEF-DLLKHAKKPSFTLSGGNKRKLSVAI--AMIGDPPIVILDEPSTGMDPIA 1636
V +L++ +LL + P+ LSGG +++ VA+ A++ +P ++++DEP + +D A
Sbjct: 122 VRWAAELLQIEELLN--RYPA-QLSGGQRQR--VAVARAIVVEPDVLLMDEPLSNLD--A 174
Query: 1637 K-RF-MWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
K R M I +L + T I TH EA + RI +M GQL IGSP +
Sbjct: 175 KLRVAMRAEIKKLQQKLKVT-TIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 229
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 6e-15
Identities = 70/235 (29%), Positives = 121/235 (51%), Gaps = 39/235 (16%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+++ L K + GN AVN L LT+ + + L LLG +G GK+TT+ M+ GL PT G
Sbjct: 12 VKLENLTKRF----GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 67
Query: 620 ALVFGKNITADMDEIRKGLGVCPQY-DI--------LFPELTVREHLEMFAV-LKGV-KE 668
+++T + P+ +I ++P +TV E++ F + +K K+
Sbjct: 68 IYFGDRDVT----------YLPPKDRNISMVFQSYAVWPHMTVYENIA-FPLKIKKFPKD 116
Query: 669 ELLESV--VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 726
E+ + V AE++ L ++ LSGG ++++++ A++ + V+++DEP S +D
Sbjct: 117 EIDKRVRWAAELLQIEELLNRYP---AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
Query: 727 P---YSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
+MR IKK+++ + TH EA +GDRIA+M G L GS
Sbjct: 174 AKLRVAMRAE---IKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGS 225
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 84.3 bits (208), Expect = 2e-16
Identities = 51/276 (18%), Positives = 95/276 (34%), Gaps = 31/276 (11%)
Query: 1409 KEWWKGTRHRLCNTPSSYLEPLLQSSSESDTLDLNEDIDVQVERNRVLSGSVDNAIIYLR 1468
+ + + Y+ L D LD V ++ L
Sbjct: 378 IDERIIDQQAWFTHITPYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLC 437
Query: 1469 NLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAF 1528
N G AK+ ++ ++ +G G NG GK+T + I+ + F
Sbjct: 438 NCEFSLAYG----AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVD----GF 489
Query: 1529 IFGKDIRSDPKAARRLIGYCPQ-FDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLV 1587
++ R Y D +V + + + + + + +KL+
Sbjct: 490 PTQEECR---------TVYVEHDIDGTHSDTSVLDFVF-----ESGVGTK--EAIKDKLI 533
Query: 1588 EFDLLKHA-KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISR 1646
EF P LSGG K KL++A A++ + I++LDEP+ +D + ++ ++
Sbjct: 534 EFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT 593
Query: 1647 LSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLR 1682
I +H +C I G +LR
Sbjct: 594 C-----GITSITISHDSVFLDNVCEYIINYEGLKLR 624
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 77.0 bits (189), Expect = 4e-14
Identities = 54/306 (17%), Positives = 109/306 (35%), Gaps = 32/306 (10%)
Query: 469 LLDTLLYGVIGLYLDKVLPKENGVRYRWNFIFQNCFRRKKSVIKHHVSSAEVKINKKLSK 528
+++ LL K++ + + ++ + I K
Sbjct: 349 VVNELLKDETVAPRFKIVVEYIAAIGADLIDERIIDQQAWFTHITP----YMTIFLHEKK 404
Query: 529 EKECAFALDACEPVVEAISLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYE 588
K+ + + +E +G + + Y K +N QL L
Sbjct: 405 AKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKIL----LNKTQLRLKR 460
Query: 589 NQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILF 648
+ + G NG GKST + + G F +E R V D
Sbjct: 461 ARRYGICGPNGCGKSTLMRAIAN------GQVDGFPT-----QEECRTVY-VEHDIDGTH 508
Query: 649 PELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADK-VNIVVRALSGGMKRKLSLGI 707
+ +V + V + + + + + E G D+ + + + ALSGG K KL+L
Sbjct: 509 SDTSVLD-----FVFESGVGT--KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALAR 561
Query: 708 ALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK-GRIILLTTHSMDEAEELGDRIAIM 766
A++ ++ +++LDEPT+ +D + + W L+ + G + +H + + + I
Sbjct: 562 AVLRNADILLLDEPTNHLDTVN--VAW-LVNYLNTCGITSITISHDSVFLDNVCEYIINY 618
Query: 767 ANGSLK 772
L+
Sbjct: 619 EGLKLR 624
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 1e-08
Identities = 34/187 (18%), Positives = 58/187 (31%), Gaps = 22/187 (11%)
Query: 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1522
AI+ + N+ YPG K + + F +G NGAGK+T +++++GE P
Sbjct: 670 AIVKVTNMEFQYPGTS----KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP 725
Query: 1523 TDGTAFIFGKDIRSDPKAARRLIGYCPQ----FDALLEYLTVQEHLELYARIKGVAEYRM 1578
T G ++ R I Y Q T E+++ + E
Sbjct: 726 TSGE-VYTHENCR---------IAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMD 775
Query: 1579 DDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKR 1638
+ A F + G +R + G + K
Sbjct: 776 RANRQ----INENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKS 831
Query: 1639 FMWEVIS 1645
W +
Sbjct: 832 ERWVPMM 838
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 1e-08
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Query: 653 VREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKV--NIVVRALSGGMKRKLSLGIALI 710
V E A+ G L + E +GL ++ + +R LSGG K KL L
Sbjct: 858 VAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTW 917
Query: 711 GDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK-GRIILLTTHSMDEAEELGDRIAIMANG 769
+++LDEPT+ +D S L L K +K+ +++ THS + + L + + + +G
Sbjct: 918 QRPHLIVLDEPTNYLDRDS--LGA-LSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDG 974
Query: 770 SLK 772
+
Sbjct: 975 RMT 977
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 2e-07
Identities = 26/133 (19%), Positives = 46/133 (34%), Gaps = 9/133 (6%)
Query: 1550 QFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRK 1609
+ E + R E L D + LSGG K K
Sbjct: 854 HSKMVAEVDMKEALASGQFRPLTRKEIE---EHCSML-GLDPEIVSHSRIRGLSGGQKVK 909
Query: 1610 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQAL 1669
L +A P +++LDEP+ +D + + + + + VI+ THS + L
Sbjct: 910 LVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF-----EGGVIIITHSAEFTKNL 964
Query: 1670 CTRIGIMVGGQLR 1682
+ + G++
Sbjct: 965 TEEVWAVKDGRMT 977
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 2e-04
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTG 618
+ + + +A++G NGAGKST I++L G + PT+G
Sbjct: 689 ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG 728
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 2e-16
Identities = 63/231 (27%), Positives = 111/231 (48%), Gaps = 18/231 (7%)
Query: 550 MKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISML 609
+K ++G +Q + Y T R + + L L + + Q LAL+G +G GKST + +L
Sbjct: 1022 LKPNMLEGN-VQFSGVVFNYPT-RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL 1079
Query: 610 VGLIPPTTGDALVFGKNITA-DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKE 668
P G + GK I ++ +R LG+ Q ILF ++ E++ + V
Sbjct: 1080 ERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDC-SIAENIAYGDNSRVVSY 1138
Query: 669 ELLESV--VAEMVDEV-GLADKVNIVV----RALSGGMKRKLSLGIALIGDSKVVILDEP 721
E + A + + L DK N V LSGG K+++++ AL+ +++LDE
Sbjct: 1139 EEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEA 1198
Query: 722 TSGMDPYSMRLTWQLIKKIKKGRIILLTTH---SMDEAEELGDRIAIMANG 769
TS +D S ++ + + K ++GR ++ H ++ A D I ++ NG
Sbjct: 1199 TSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNA----DLIVVIQNG 1245
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 3e-13
Identities = 57/230 (24%), Positives = 112/230 (48%), Gaps = 22/230 (9%)
Query: 554 EVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLI 613
+ G ++ + +H Y + R + L L + Q +AL+G++G GKSTT+ ++ L
Sbjct: 383 NIQGN-LEFKNIHFSYPS-RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY 440
Query: 614 PPTTGDALVFGKNITA-DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLE 672
P G + G++I ++ +R+ +GV Q +LF T+ E++ + V + +E
Sbjct: 441 DPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRY--GREDVTMDEIE 497
Query: 673 SVVAEM--VDE--VGLADKVNIVV----RALSGGMKRKLSLGIALIGDSKVVILDEPTSG 724
+ + + L + + +V LSGG K+++++ AL+ + K+++LDE TS
Sbjct: 498 KA-VKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSA 556
Query: 725 MDPYSMRLTWQLIKKIKKGRIILLTTHSMD---EAEELGDRIAIMANGSL 771
+D S + + K ++GR ++ H + A D IA G +
Sbjct: 557 LDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNA----DVIAGFDGGVI 602
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 7e-12
Identities = 63/290 (21%), Positives = 120/290 (41%), Gaps = 58/290 (20%)
Query: 1438 DTLDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGE 1497
+D ID + N + +N+ YP R + ++ + L V++G+
Sbjct: 363 KIIDNKPSIDSFSKSGHKPDNIQGN--LEFKNIHFSYPS--RKEVQI-LKGLNLKVKSGQ 417
Query: 1498 CFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARRLIGYCPQ----FD 1552
+G +G GK+TT+ ++ P DG I G+DIR+ + + R +IG Q F
Sbjct: 418 TVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFA 477
Query: 1553 ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSF------------ 1600
T+ E++ G + MD++ +K A F
Sbjct: 478 T-----TIAENIRY-----GREDVTMDEIE-------KAVKEANAYDFIMKLPHQFDTLV 520
Query: 1601 -----TLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTA 1655
LSGG K+++++A A++ +P I++LDE ++ +D ++ + + + +G+T
Sbjct: 521 GERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR--EGRTT 578
Query: 1656 VILTTHSMNEAQALCT-----RIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1700
+++ A L T I GG + G+ L G + +L
Sbjct: 579 IVI-------AHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKL 621
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 1e-09
Identities = 58/257 (22%), Positives = 117/257 (45%), Gaps = 42/257 (16%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE--Y- 1521
+ + YP R V + L+ V+ G+ +G++G GK+T + ++ E Y
Sbjct: 1031 VQFSGVVFNYPT--RPSIPV-LQGLSLEVKKGQTLALVGSSGCGKSTVVQLL---ERFYD 1084
Query: 1522 PTDGTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDD 1580
P G+ F+ GK+I+ + + R +G Q L + ++ E++ Y
Sbjct: 1085 PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDC-SIAENI-AYGDNS-------RV 1135
Query: 1581 VVMEKLVEFDLLKHAKKPSF-----------------TLSGGNKRKLSVAIAMIGDPPIV 1623
V E++V K A F LSGG K+++++A A++ P I+
Sbjct: 1136 VSYEEIVR--AAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHIL 1193
Query: 1624 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRC 1683
+LDE ++ +D +++ + E + + R+G+T I+ H ++ Q I ++ G+++
Sbjct: 1194 LLDEATSALDTESEKVVQEALDKA--REGRT-CIVIAHRLSTIQN-ADLIVVIQNGKVKE 1249
Query: 1684 IGSPQHLKTRFGNFLEL 1700
G+ Q L + G + +
Sbjct: 1250 HGTHQQLLAQKGIYFSM 1266
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 4e-16
Identities = 72/235 (30%), Positives = 126/235 (53%), Gaps = 33/235 (14%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+++ + KV+ G AV + L + + + + LLG +G GK+TT+ M+ GL P+ G
Sbjct: 4 VRLVDVWKVF----GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59
Query: 620 ALVFGKNITADMDEIRKGLGVCPQ-YDI--------LFPELTVREHLEMFAV-LKGV-KE 668
+ K + + KG+ V P+ DI L+P +TV +++ F + L+ V ++
Sbjct: 60 IYIGDK----LVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIA-FPLKLRKVPRQ 114
Query: 669 ELLESV--VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 726
E+ + V VAE++ L ++ R LSGG +++++LG A++ +V ++DEP S +D
Sbjct: 115 EIDQRVREVAELLGLTELLNRKP---RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD 171
Query: 727 P---YSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
MR +KK+++ G + TH EA +GDRIA+M G L+ GS
Sbjct: 172 AKLRVRMRAE---LKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGS 223
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 6e-16
Identities = 75/240 (31%), Positives = 119/240 (49%), Gaps = 26/240 (10%)
Query: 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1522
A + L ++ KV+ AV ++ V+ GE LG +G GKTTTL MI+G E P
Sbjct: 2 AGVRLVDVWKVFGE------VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP 55
Query: 1523 TDGTAFIFGKDIRSDPKAAR-----RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYR 1577
+ G +I K + K R I Q AL ++TV +++ +++ V
Sbjct: 56 SRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQE 115
Query: 1578 MDDVVME--KLVEF-DLLKHAKKPSFTLSGGNKRKLSVAI--AMIGDPPIVILDEPSTGM 1632
+D V E +L+ +LL +KP LSGG +++ VA+ A++ P + ++DEP + +
Sbjct: 116 IDQRVREVAELLGLTELLN--RKPR-ELSGGQRQR--VALGRAIVRKPQVFLMDEPLSNL 170
Query: 1633 DPIAK-RF-MWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
D AK R M + +L + G T I TH EA + RI +M G L+ +GSP +
Sbjct: 171 D--AKLRVRMRAELKKLQRQLGVT-TIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 79.8 bits (197), Expect = 1e-15
Identities = 55/301 (18%), Positives = 114/301 (37%), Gaps = 39/301 (12%)
Query: 596 GHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGLGVCPQYDILFPELTVR 654
G G+GKST +S + L+ G+ + G + + +++ RK GV PQ +F T R
Sbjct: 54 GRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIF-SGTFR 111
Query: 655 EHL---------EMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSL 705
++L E++ V V L SV+ + L + LS G K+ + L
Sbjct: 112 KNLDPNAAHSDQEIWKVADEVG---LRSVIEQF--PGKLDFVLVDGGCVLSHGHKQLMCL 166
Query: 706 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHS----MDEAEELGD 761
+++ +K+++LDEP++ +DP + ++ + +K+ ++L ++ D
Sbjct: 167 ARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLE-----CD 221
Query: 762 RIAIMANGSLKCCGS-------------SLFLKHQYGVGYTLTLVKSAPDASAAADIVYR 808
+ ++ ++ S + F+ + + +A D +
Sbjct: 222 QFLVIEENKVRQYDSILELYHYPADRFVAGFIGSPKMNFLPVKVTATAIDQVQVELPMPN 281
Query: 809 HIPSALCVSEVGTEITFKLPLASSSSFESMFREIESCIRKSVSKVEADATEDTDYLGIES 868
L V ++ + L + + V VE E ++ I S
Sbjct: 282 RQQVWLPVESRDVQVGANMSLGIRPEHLLPSDIADVILEGEVQVVEQLGNETQIHIQIPS 341
Query: 869 F 869
Sbjct: 342 I 342
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 6e-09
Identities = 73/358 (20%), Positives = 138/358 (38%), Gaps = 29/358 (8%)
Query: 1461 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE 1520
+ +++L Y + +++FS+ G+ G LG G+GK+T LS
Sbjct: 16 SGGQMTVKDLTAKY----TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 71
Query: 1521 YPTDGTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHL---ELY--ARIKGVA 1574
+G I G S + R+ G PQ + T +++L + I VA
Sbjct: 72 NT-EGEIQIDGVSWDSITLEQWRKAFGVIPQ-KVFIFSGTFRKNLDPNAAHSDQEIWKVA 129
Query: 1575 EY-RMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMD 1633
+ + V+ + L LS G+K+ + +A +++ I++LDEPS +D
Sbjct: 130 DEVGLRSVIEQF--PGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLD 187
Query: 1634 PIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL-KT 1692
P + L VIL + A C + ++ ++R S L
Sbjct: 188 P---VTYQIIRRTLKQAFADCTVILCEARIE-AMLECDQFLVIEENKVRQYDSILELYHY 243
Query: 1693 RFGNFLELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSL----LDDLEVCIGGIDS-- 1746
F+ + +++ + ++ I + ++P R ++ +V +G S
Sbjct: 244 PADRFVAGFIGSPKMNFLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLG 303
Query: 1747 ISSENATAAEIS-LSQEMLLIVGRWLGNEERIKTLISSSSSPDRIFGEQLSEQLVRDG 1803
I E+ ++I+ + E + V LGNE + I S + Q LV +G
Sbjct: 304 IRPEHLLPSDIADVILEGEVQVVEQLGNE--TQIHIQIPSIRQNLVYRQNDVVLVEEG 359
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 72.9 bits (180), Expect = 5e-14
Identities = 53/235 (22%), Positives = 112/235 (47%), Gaps = 19/235 (8%)
Query: 552 QQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVG 611
I R + Y ++++ L++ + +++ ++G +G+GKST ++
Sbjct: 1 HHHHHHD-ITFRNIRFRYKPDSPV--ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQR 57
Query: 612 LIPPTTGDALVFGKNI-TADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEEL 670
P G L+ G ++ AD + +R+ +GV Q ++L ++ +++ A E++
Sbjct: 58 FYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNR-SIIDNI-SLANPGMSVEKV 115
Query: 671 LESVVAEMVDE--VGLADKVNIVV----RALSGGMKRKLSLGIALIGDSKVVILDEPTSG 724
+ + + L + N +V LSGG ++++++ AL+ + K++I DE TS
Sbjct: 116 IYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSA 175
Query: 725 MDPYSMRLTWQLIKKIKKGRIILLTTH---SMDEAEELGDRIAIMANGSLKCCGS 776
+D S + + + KI KGR +++ H ++ A DRI +M G + G
Sbjct: 176 LDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNA----DRIIVMEKGKIVEQGK 226
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 70.2 bits (173), Expect = 4e-13
Identities = 47/202 (23%), Positives = 96/202 (47%), Gaps = 33/202 (16%)
Query: 1479 RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-D 1537
+ D+ V + ++ S++ GE G +G +G+GK+T +I P +G I G D+ D
Sbjct: 18 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD 77
Query: 1538 PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHA-- 1595
P RR +G Q D +L ++ +++ A + +EK++ L A
Sbjct: 78 PNWLRRQVGVVLQ-DNVLLNRSIIDNI-SLAN---------PGMSVEKVIYAAKLAGAHD 126
Query: 1596 ---KKPS----------FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1642
+ LSGG ++++++A A++ +P I+I DE ++ +D ++ +
Sbjct: 127 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 186
Query: 1643 VISRLSTRQGKTAVI----LTT 1660
+ ++ +G+T +I L+T
Sbjct: 187 NMHKIC--KGRTVIIIAHRLST 206
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 2e-13
Identities = 64/265 (24%), Positives = 103/265 (38%), Gaps = 42/265 (15%)
Query: 1487 HSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIG 1546
+ F ++ G+ G+ GAGKT+ L MI GE P++G G+ I
Sbjct: 55 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------IS 102
Query: 1547 YCPQFDALLEYLTVQEHLELYARIKGVA--EYRMDDVV----MEKLVEFDLLKHAKKPS- 1599
+C Q ++ + T++E+ I GV+ EYR V+ +E+ +
Sbjct: 103 FCSQ-NSWIMPGTIKEN------IIGVSYDEYRYRSVIKACQLEE--DISKFAEKDNIVL 153
Query: 1600 ----FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP-IAKRFMWEVISRLSTRQGKT 1654
TLSGG + ++S+A A+ D + +LD P +D K + +L KT
Sbjct: 154 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL--MANKT 211
Query: 1655 AVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLED 1714
IL T M + +I I+ G G+ L+ +F + E
Sbjct: 212 -RILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQNLRPDFSSKLMGCDSFDQFSAER 269
Query: 1715 LCQIIQERVFDIPSQRRSLLDDLEV 1739
I+ E R SL D V
Sbjct: 270 RNSILTE-----TLHRFSLEGDAPV 289
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 4e-09
Identities = 45/211 (21%), Positives = 85/211 (40%), Gaps = 38/211 (18%)
Query: 580 NSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 639
+ + Q+LA+ G GAGK++ + M++G + P+ G G+ +
Sbjct: 55 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------IS 102
Query: 640 VCPQYDILFPELTVREH---LEMFAVLKGVKEELLESVVA--------EMVDEVGLADKV 688
C Q + P T++E+ + E SV+ E D +
Sbjct: 103 FCSQNSWIMPG-TIKENIIGVSY-------DEYRYRSVIKACQLEEDISKFAE---KDNI 151
Query: 689 NIVVR--ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPY-SMRLTWQLIKKIKKGRI 745
+ LSGG + ++SL A+ D+ + +LD P +D + + K+ +
Sbjct: 152 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 211
Query: 746 ILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
+L T M+ ++ D+I I+ GS G+
Sbjct: 212 RILVTSKMEHLKKA-DKILILHEGSSYFYGT 241
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 5e-13
Identities = 57/237 (24%), Positives = 101/237 (42%), Gaps = 40/237 (16%)
Query: 1479 RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDP 1538
++ +TFS+ G +G G GK++ LS + E +G I G
Sbjct: 14 ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGS------ 67
Query: 1539 KAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVE-------FDL 1591
+ Y PQ A ++ +++E++ L+ ++++ +++ ++
Sbjct: 68 ------VAYVPQ-QAWIQNDSLRENI-LFGC-------QLEEPYYRSVIQACALLPDLEI 112
Query: 1592 LKHAKKPS-----FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP-IAKRFMWEVIS 1645
L + LSGG K+++S+A A+ + I + D+P + +D + K VI
Sbjct: 113 LPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIG 172
Query: 1646 RLSTRQGKTAVILTTHSMNEAQAL--CTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1700
+ KT IL THSM L I +M GG++ +GS Q L R G F E
Sbjct: 173 PKGMLKNKT-RILVTHSM---SYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEF 225
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 4e-07
Identities = 51/217 (23%), Positives = 97/217 (44%), Gaps = 51/217 (23%)
Query: 582 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVC 641
+ ++ E ++A++G G GKS+ +S L+ + G + G +
Sbjct: 24 ITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGS------------VAYV 71
Query: 642 PQYDILFPELTVREHLEMFAVLKGVK--EELLESVV---AEMVD----------EVGLAD 686
PQ + + ++RE+ +L G + E SV+ A + D E+G +
Sbjct: 72 PQQAWIQND-SLREN-----ILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIG--E 123
Query: 687 K-VNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK------ 739
K VN LSGG K+++SL A+ ++ + + D+P S +D + + + +
Sbjct: 124 KGVN-----LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK---HIFENVIGPKG 175
Query: 740 IKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
+ K + +L THSM ++ D I +M+ G + GS
Sbjct: 176 MLKNKTRILVTHSMSYLPQV-DVIIVMSGGKISEMGS 211
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 6e-13
Identities = 46/265 (17%), Positives = 99/265 (37%), Gaps = 57/265 (21%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY--P 1522
+ +++ YP + +V + LTF++ G+ +G NG+GK+T +++ + P
Sbjct: 17 VKFQDVSFAYP--NHPNVQV-LQGLTFTLYPGKVTALVGPNGSGKSTVAALL--QNLYQP 71
Query: 1523 TDGTAFIFGKDIRS-DPKAARRLIGYCPQ----FDALLEYLTVQEHLELYARIKGVAEYR 1577
T G + G+ + D + Q F + +E++ Y
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGR-----SFRENI-AYGLT------- 118
Query: 1578 MDDVVMEKLVEFDLLKHAKKPSF-----------------TLSGGNKRKLSVAIAMIGDP 1620
ME++ + + F LSGG ++ +++A A+I P
Sbjct: 119 -RTPTMEEITA--VAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKP 175
Query: 1621 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCT-----RIGI 1675
++ILD ++ +D + + ++ +T +++ Q L I
Sbjct: 176 RLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLI-------TQQLSLAERAHHILF 228
Query: 1676 MVGGQLRCIGSPQHLKTRFGNFLEL 1700
+ G + G+ L R G + +
Sbjct: 229 LKEGSVCEQGTHLQLMERGGCYRSM 253
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 8e-13
Identities = 65/269 (24%), Positives = 117/269 (43%), Gaps = 23/269 (8%)
Query: 550 MKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISML 609
+ + G ++ + + Y N + L TLY ++ AL+G NG+GKST ++L
Sbjct: 8 LAPLNMKGL-VKFQDVSFAYPN-HPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL 65
Query: 610 VGLIPPTTGDALVFGKNI-TADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKE 668
L PT G L+ G+ + D + + Q +LF + RE++ + + +
Sbjct: 66 QNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLF-GRSFRENI-AYGLTRTPTM 123
Query: 669 ELLESVVAEM--VDE--VGLADKVNIVV--RA--LSGGMKRKLSLGIALIGDSKVVILDE 720
E + + VA + G + V LSGG ++ ++L ALI +++ILD
Sbjct: 124 EEITA-VAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDN 182
Query: 721 PTSGMDPYSMRLTWQLIKKIKK--GRIILLTTH---SMDEAEELGDRIAIMANGSLKCCG 775
TS +D + +L+ + + R +LL T + A I + GS+ G
Sbjct: 183 ATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERA----HHILFLKEGSVCEQG 238
Query: 776 SSLFLKHQYGVGYTLTLVKSAPDASAAAD 804
+ L L + G ++ +AP +AA
Sbjct: 239 THLQLMERGGCYRSMVEALAAPSDAAAHH 267
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 7e-13
Identities = 86/309 (27%), Positives = 141/309 (45%), Gaps = 55/309 (17%)
Query: 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1522
A + L+N+ K + + + GE F+G +G GK+T L MI+G E
Sbjct: 2 ASVQLQNVTKAWGEVV------VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI 55
Query: 1523 TDGTAFIFGKDIRSDPKAARRLIG-----YCPQFDALLEYLTVQEHLELYARIKGVAEYR 1577
T G FI K + +D A R +G Y AL +L+V E++ ++ G +
Sbjct: 56 TSGDLFIGEKRM-NDTPPAERGVGMVFQSY-----ALYPHLSVAENMSFGLKLAGAKKEV 109
Query: 1578 MDDVVME--KLVEFD-LLKHAKKPSFTLSGGNK-RKLSVAI--AMIGDPPIVILDEPSTG 1631
++ V + ++++ LL +KP LSGG + R VAI ++ +P + +LDEP +
Sbjct: 110 INQRVNQVAEVLQLAHLLD--RKPK-ALSGGQRQR---VAIGRTLVAEPSVFLLDEPLSN 163
Query: 1632 MDPIAK-----RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS 1686
+D A R E ISRL R G+T +I TH EA L +I ++ G++ +G
Sbjct: 164 LD--AALRVQMRI--E-ISRLHKRLGRT-MIYVTHDQVEAMTLADKIVVLDAGRVAQVGK 217
Query: 1687 PQHL----KTRF-----G----NFLELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSL 1733
P L RF G NFL ++V T + V +E + + +P + R +
Sbjct: 218 PLELYHYPADRFVAGFIGSPKMNFLPVKVTATAIDQVQVE--LPMPNRQQVWLPVESRDV 275
Query: 1734 LDDLEVCIG 1742
+ +G
Sbjct: 276 QVGANMSLG 284
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 1e-06
Identities = 63/228 (27%), Positives = 112/228 (49%), Gaps = 39/228 (17%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+Q++ + K + G + L ++E + + +G +G GKST + M+ GL T+GD
Sbjct: 4 VQLQNVTKAW----GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD 59
Query: 620 ALVFGKNITADMDEIRKGLGVCP-QYDI--------LFPELTVREHLEMFAV-LKGV-KE 668
+ K + P + + L+P L+V E++ F + L G KE
Sbjct: 60 LFIGEKRMN----------DTPPAERGVGMVFQSYALYPHLSVAENMS-FGLKLAGAKKE 108
Query: 669 ELLESV--VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 726
+ + V VAE+ + LA ++ +ALSGG ++++++G L+ + V +LDEP S +D
Sbjct: 109 VINQRVNQVAEV---LQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
Query: 727 P---YSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANG 769
MR+ I ++ K GR ++ TH EA L D+I ++ G
Sbjct: 166 AALRVQMRIE---ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAG 210
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 67.9 bits (167), Expect = 2e-12
Identities = 49/214 (22%), Positives = 95/214 (44%), Gaps = 41/214 (19%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY-- 1521
++ R++ Y ++ + ++F Q F G +G GK+T S++ E +
Sbjct: 1 MLSARHVDFAYDDSEQ-----ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL--ERFYQ 53
Query: 1522 PTDGTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDD 1580
PT G I G+ I + + R IG+ Q D+ + T++E+L Y D
Sbjct: 54 PTAGEITIDGQPIDNISLENWRSQIGFVSQ-DSAIMAGTIRENL-TYG--------LEGD 103
Query: 1581 VVMEKLVEFDLLKHAKKPSF-----------------TLSGGNKRKLSVAIAMIGDPPIV 1623
E L + +L A SF +SGG +++L++A A + +P I+
Sbjct: 104 YTDEDLWQ--VLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKIL 161
Query: 1624 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVI 1657
+LDE + +D ++ + + + L +G+T ++
Sbjct: 162 MLDEATASLDSESESMVQKALDSLM--KGRTTLV 193
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 64.8 bits (159), Expect = 2e-11
Identities = 50/204 (24%), Positives = 92/204 (45%), Gaps = 23/204 (11%)
Query: 580 NSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP----PTTGDALVFGKNI-TADMDEI 634
+ N I+A G +G GKST S L+ PT G+ + G+ I ++
Sbjct: 19 RDISFEAQPNSIIAFAGPSGGGKSTIFS----LLERFYQPTAGEITIDGQPIDNISLENW 74
Query: 635 RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDE--VGLADKVNIVV 692
R +G Q + T+RE+L E+L + + + D++N V
Sbjct: 75 RSQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEV 133
Query: 693 --R--ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILL 748
R +SGG +++L++ A + + K+++LDE T+ +D S + + + + KGR L+
Sbjct: 134 GERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLV 193
Query: 749 TTH---SMDEAEELGDRIAIMANG 769
H ++ +A D+I + G
Sbjct: 194 IAHRLSTIVDA----DKIYFIEKG 213
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 8e-12
Identities = 50/237 (21%), Positives = 89/237 (37%), Gaps = 42/237 (17%)
Query: 1479 RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDP 1538
+ + F ++ G+ G+ GAGKT+ L MI GE P++G G+
Sbjct: 17 EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------ 70
Query: 1539 KAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVE-------FDL 1591
I +C Q + + T++E++ ++ D+ +++
Sbjct: 71 ------ISFCSQ-FSWIMPGTIKENI-IFGV-------SYDEYRYRSVIKACQLEEDISK 115
Query: 1592 LKHAKKPS-----FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP-IAKRFMWEVIS 1645
TLSGG + ++S+A A+ D + +LD P +D K +
Sbjct: 116 FAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVC 175
Query: 1646 RLSTRQGKTAVILTTHSMNEAQAL--CTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1700
+L KT IL T M + L +I I+ G G+ L+ +F
Sbjct: 176 KL--MANKT-RILVTSKM---EHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSK 226
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 8e-09
Identities = 47/214 (21%), Positives = 90/214 (42%), Gaps = 43/214 (20%)
Query: 580 NSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 639
+ + Q+LA+ G GAGK++ + M++G + P+ G G+ +
Sbjct: 25 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------IS 72
Query: 640 VCPQYDILFPELTVREHLEMFAVLKGVK--EELLESVV---AEMVD----------EVGL 684
C Q+ + P T++E+ ++ GV E SV+ D +G
Sbjct: 73 FCSQFSWIMPG-TIKEN-----IIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG- 125
Query: 685 ADK-VNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPY-SMRLTWQLIKKIKK 742
+ + LSGG + ++SL A+ D+ + +LD P +D + + K+
Sbjct: 126 -EGGIT-----LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 179
Query: 743 GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
+ +L T M+ ++ D+I I+ GS G+
Sbjct: 180 NKTRILVTSKMEHLKKA-DKILILHEGSSYFYGT 212
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 3e-11
Identities = 46/202 (22%), Positives = 94/202 (46%), Gaps = 37/202 (18%)
Query: 1474 YPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKD 1533
YP +++ + + S+ F + +G +G G+GK+T ++ Y +G I GK+
Sbjct: 27 YPK--QTNHRT-LKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RFYDAEGDIKIGGKN 82
Query: 1534 IRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL 1592
+ + + R +IG PQ D +L T++ ++ LY ++ D E++++
Sbjct: 83 VNKYNRNSIRSIIGIVPQ-DTILFNETIKYNI-LYGKL---------DATDEEVIK--AT 129
Query: 1593 KHAKKPSF-----------------TLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPI 1635
K A+ F LSGG ++++++A ++ DP IVI DE ++ +D
Sbjct: 130 KSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSK 189
Query: 1636 AKRFMWEVISRLSTRQGKTAVI 1657
+ + + L + +T +I
Sbjct: 190 TEYLFQKAVEDLR--KNRTLII 209
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 5e-11
Identities = 60/237 (25%), Positives = 119/237 (50%), Gaps = 19/237 (8%)
Query: 543 VEAISLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGK 602
+E+ SL +++ I+ ++ Y K+ N + S+ + AL+GH G+GK
Sbjct: 2 LESFSLTSHEKKFGVN-IEFSDVNFSY-PKQTNHRTLKSINFFIPSGTTCALVGHTGSGK 59
Query: 603 STTISMLVGLIPPTTGDALVFGKNI-TADMDEIRKGLGVCPQYDILFPELTVREHLEMFA 661
ST +L GD + GKN+ + + IR +G+ PQ ILF E T++ ++ +
Sbjct: 60 STIAKLLYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNE-TIKYNIL-YG 116
Query: 662 VLKGVKEELLESVVAEMVDE--VGLADKVNIVV--RA--LSGGMKRKLSLGIALIGDSKV 715
L EE++++ + + + L K + +V + LSGG ++++++ L+ D K+
Sbjct: 117 KLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKI 176
Query: 716 VILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTH---SMDEAEELGDRIAIMANG 769
VI DE TS +D + L + ++ ++K R +++ H ++ A + I ++ G
Sbjct: 177 VIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSA----ESIILLNKG 229
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 6e-11
Identities = 46/190 (24%), Positives = 94/190 (49%), Gaps = 16/190 (8%)
Query: 590 QILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEIRKGLGVCPQYDILF 648
Q LAL+G +GAGKST + +L ++G + G++I +R +GV PQ +LF
Sbjct: 81 QTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLF 140
Query: 649 PELTVREHLEMFAVLKGVKEELLESVVAEMVDE--VGLADKVNIVV--RA--LSGGMKRK 702
+ T+ +++ + + +E+ + A + + + + V R LSGG K++
Sbjct: 141 ND-TIADNIR-YGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQR 198
Query: 703 LSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTH---SMDEAEEL 759
+++ ++ +++LDE TS +D + R + K+ R ++ H ++ A
Sbjct: 199 VAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNA--- 255
Query: 760 GDRIAIMANG 769
D+I ++ +G
Sbjct: 256 -DQILVIKDG 264
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 2e-10
Identities = 44/193 (22%), Positives = 88/193 (45%), Gaps = 29/193 (15%)
Query: 1481 DAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPK 1539
D + + ++F+V G+ +G +GAGK+T L ++ + G I G+DI
Sbjct: 65 DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQA 124
Query: 1540 AARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVME--KLVEFDLLKHAKK 1597
+ R IG PQ D +L T+ +++ Y R+ +D V + H
Sbjct: 125 SLRSHIGVVPQ-DTVLFNDTIADNI-RYGRVTAG-----NDEVEAAAQAAGI----HDAI 173
Query: 1598 PSFT-------------LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVI 1644
+F LSGG K+++++A ++ P I++LDE ++ +D +R + +
Sbjct: 174 MAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASL 233
Query: 1645 SRLSTRQGKTAVI 1657
+++ +T ++
Sbjct: 234 AKVC--ANRTTIV 244
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 7e-10
Identities = 49/203 (24%), Positives = 88/203 (43%), Gaps = 36/203 (17%)
Query: 1442 LNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGF 1501
LNE ++ N + +V+ ++ + N+ Y + + FSV+ G
Sbjct: 320 LNEKPAIEEADNALALPNVEGSVSF-ENVEFRYFENTDP----VLSGVNFSVKPGSLVAV 374
Query: 1502 LGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTV 1560
LG G+GK+T +++I P G + D+R+ K R I PQ + +L T+
Sbjct: 375 LGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQ-ETVLFSGTI 433
Query: 1561 QEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSF-----------------TLS 1603
+E+L ++ +D +++VE K A+ F S
Sbjct: 434 KENL----------KWGREDATDDEIVEA--AKIAQIHDFIISLPEGYDSRVERGGRNFS 481
Query: 1604 GGNKRKLSVAIAMIGDPPIVILD 1626
GG K++LS+A A++ P ++ILD
Sbjct: 482 GGQKQRLSIARALVKKPKVLILD 504
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 3e-08
Identities = 45/160 (28%), Positives = 69/160 (43%), Gaps = 41/160 (25%)
Query: 590 QILALLGHNGAGKSTTISMLVGLIP----PTTGDALVFGKNITA-DMDEIRKGLGVCPQY 644
++A+LG G+GKST L+ LIP P G V ++ + ++R + PQ
Sbjct: 370 SLVAVLGETGSGKST----LMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQE 425
Query: 645 DILFPELTVREHL----------EMFAVLK--------GVKEELLESVVAEMVDEVGLAD 686
+LF T++E+L E+ K E +S V
Sbjct: 426 TVLFSG-TIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVER--------G 476
Query: 687 KVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 726
N SGG K++LS+ AL+ KV+ILD+ TS +D
Sbjct: 477 GRN-----FSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.3 bits (145), Expect = 6e-09
Identities = 72/562 (12%), Positives = 151/562 (26%), Gaps = 150/562 (26%)
Query: 482 LDKVL---PKENGVRYRWNFIFQNCFRRK-KSVIKHHVSSAEVKINKKLSKEKECAFALD 537
+D ++ +G +F K + +++ V F +
Sbjct: 51 IDHIIMSKDAVSGTLR----LF-WTLLSKQEEMVQKFVEEVL---------RINYKFLMS 96
Query: 538 ACEPVVEAISLDMKQ--QEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYE---NQIL 592
+ S+ + ++ D + K Y R L+ L E + +
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK-YNVSRLQP--YLKLRQALLELRPAKNV 153
Query: 593 ALLGHNGAGKSTTISMLVG--LIPPTTGDALVFG------KNITADMDEIRKGLGVCPQY 644
+ G G+GK+ + + + F KN + + + Q
Sbjct: 154 LIDGVLGSGKTW----VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 645 DILFPEL------------TVREHLEMFAVLKGVKEELL-------ESVV---------- 675
D + +++ L K + LL
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269
Query: 676 -----AEMVDEVGLADKVNIVVRALSGGMKRKLSLGI-ALIGDSKVVILDEPTSGMDPYS 729
++ D + A +I + S + + D + L +P
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 730 MRL----------TWQLIKKI---KKGRIILLTTHSMDEAE--ELGDRIAIMANGSL--- 771
+ + TW K + K II + + ++ AE ++ DR+++ +
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 772 --------------------KCCGSSLFLKHQYGVGYTL------TLVKSAPDASAAADI 805
K SL K ++ VK + + I
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 806 V--YRHIPSALCVSEVGTE---------ITFKLPLASSSSFESMFRE-------IESCIR 847
V Y IP ++ I L ++FR +E IR
Sbjct: 450 VDHYN-IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 848 KSVSKVEADATEDTDYLGIESFG--IS---------VTTLEEVFLRVAGCNLDESE--CI 894
+ A + ++ + I V + + FL NL S+ +
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD-FLPKIEENLICSKYTDL 567
Query: 895 SQRNNLVTLDYVSAESDDQAPK 916
+ + + + E+ Q +
Sbjct: 568 LRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.1 bits (142), Expect = 1e-08
Identities = 79/517 (15%), Positives = 150/517 (29%), Gaps = 163/517 (31%)
Query: 1 M-GTAKRHLKAMLRKNWLLKVRHPF----VTAAEILLPTVVMLLLIAVRTRVD------- 48
+ G+ K + + ++ ++ + F + P V+ +L + ++D
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 49 -------TRIHPAQPYIRKDMFVEIGKGVSPNFVQALELMLA----KGEYLAFAP----- 92
RIH Q +R+ + S + L L+L + AF
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLK-------SKPYENCL-LVLLNVQNAKAWNAFNLSCKIL 269
Query: 93 ----DTEETRTMINLMSIKFPKLKLVSRIYKDELE--LETYIRSDLYGTCSQVKDCLNP- 145
+ T + + + DE++ L Y+ +V NP
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT-NPR 328
Query: 146 --KIKGAVVFHDQGPELFDYSIRLNHTWAFSGFPDVKTIMDTNGPYLNDLELGVNIIPTM 203
I + D G +D W + TI++++ LN LE P
Sbjct: 329 RLSIIAESI-RD-GLATWDN-------WKHVNCDKLTTIIESS---LNVLE------PA- 369
Query: 204 QYSFSGFLTLQQVLDSFIIFAAQQTGANVATENVEIPPSNLSGTHLSLKQPWTLYSPSNI 263
+++ D +F + IP LS + W
Sbjct: 370 --------EYRKMFDRLSVF----------PPSAHIPTILLS----LI---WF------- 397
Query: 264 RMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLYMMGLK 323
+ + ++ +L YS+ EK+ K + + +
Sbjct: 398 --------DVIKSDVMVVVN----------------KLHKYSLVEKQPK-ESTISIPSI- 431
Query: 324 DGIFHLSWFITYAAQFAVSSGIITACTMDSLFKYSDKTV--VFTYFFSF----------- 370
+L + ++A+ I+ + F D + YF+S
Sbjct: 432 ----YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 371 ----GLSAITLSF-FIS-----TFFARAKTAVAVGTLSFLGAFFPYYTVNDEAVPMVLKV 420
+ L F F+ A + + TL L + PY ND ++
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547
Query: 421 IASLL---------SPTA----FALGSVNFADYERAH 444
I L S AL + + A +E AH
Sbjct: 548 ILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 7e-08
Identities = 93/672 (13%), Positives = 184/672 (27%), Gaps = 206/672 (30%)
Query: 118 YKDELE--LETYIRSDLYGTCSQVKDCLNPKIKGAVVFH--DQGPE------LFDYSIRL 167
YKD L + ++ + C V+D + + H LF ++
Sbjct: 18 YKDILSVFEDAFVD-NF--DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW-TLLS 73
Query: 168 NHTWAFSGFPDVKTIMDTNGPYLNDLELGVNIIPTMQYSFSGFLTLQQVLDSFIIFAAQQ 227
F V+ ++ N +L P+M +I +
Sbjct: 74 KQEEMVQKF--VEEVLRINYKFLMSPIKTEQRQPSMMT------------RMYI-----E 114
Query: 228 TGANVATENVEIPPSNLS--GTHLSLKQ--------PW-TLY----------------SP 260
+ +N N+S +L L+Q + S
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 261 SNIRMVPFP-----TREYTDDEFQSIIKRVMGVLYLLGFLYP----ISRLISYSVFEKEQ 311
+ F + E ++++ + +LY + + S I + +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPE--TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 312 KIREGLYMMGLKDGIFHLS--WFITYAAQFAVSSGIITACTMDSLFKYSDKTVVFTYFFS 369
++R L ++ + L ++ A F S K ++ T F
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQ----------NAKAWNA------FNLSCKILLTTRFKQ 276
Query: 370 FGLSAITLSFFISTFFARAKTAVAVGTLSFLGAFFPYYTVNDEAVPMVLKVI-------- 421
T F A T + P DE ++LK +
Sbjct: 277 V------------TDFLSAATTTHISLDHHSMTLTP-----DEVKSLLLKYLDCRPQDLP 319
Query: 422 --ASLLSPTAFALGSVNFADYERAHVGLRWSNMWRASSGVNFLVCLLMMLLDTLLYGVIG 479
+P ++ A+ R + W N W+ + D L +I
Sbjct: 320 REVLTTNPRRLSI----IAESIRDGLA-TWDN-WK------------HVNCDKLTT-IIE 360
Query: 480 LYLDKVLPKENGVRYRWNFIFQNCFRRKKSV-IKHHV--------SSAEV-KINKKLSKE 529
L+ + P E + +F S I + ++V + KL K
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFP------PSAHIPTILLSLIWFDVIKSDVMVVVNKLHK- 413
Query: 530 KECAFALDACEPVVEAISLDMKQQEVDGRCIQIRKLHKV----YATKRGNCCAVNSLQLT 585
++L +P IS+ E+ + LH+ Y + + L
Sbjct: 414 ----YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS--DDLIPP 467
Query: 586 LYENQILALLGH-----NGAGKSTTISML--------------------VGLIPPTTGDA 620
+ + +GH + T M+ G I T
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 621 LVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVD 680
+ I + P+Y+ L + F L ++E L+ S +++
Sbjct: 528 KFYKPYICDN----------DPKYERLVNA------ILDF--LPKIEENLICSKYTDLL- 568
Query: 681 EVGLADKVNIVV 692
+ L + +
Sbjct: 569 RIALMAEDEAIF 580
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 7e-06
Identities = 45/318 (14%), Positives = 87/318 (27%), Gaps = 73/318 (22%)
Query: 1331 NSLLKNFFRLSPG-FCFADG--------LASLALLRQGMKDKTSDGVFDW----NVTSAS 1377
L + L P DG +A L ++ K +F W N S
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-WLNLKNCNSPE 196
Query: 1378 ICYLGCESICYFLLTLGLELLPSHKWTLMTIKEWWKGTRHRLCNTPSSYLEPLL-----Q 1432
+ + Y + H + + RL + Y LL Q
Sbjct: 197 TVLEMLQKLLY-QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP-YENCLLVLLNVQ 254
Query: 1433 SSSESDTLDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFS 1492
++ + +L ++L + + + + HS+T +
Sbjct: 255 NAKAWNAFNL---------SCKILLTTRFKQVT------DFLSAATTTHISLDHHSMTLT 299
Query: 1493 V-QAGECFG-FLGTNG------AGKTT--TLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1542
+ +L T LS+I E + K + D
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII-AESIRDGLATWDNWKHVNCDKL--T 356
Query: 1543 RLIGYCPQFDALLEYLTVQEHLELYARI----KGV-------------AEYRMDDVVMEK 1585
+I L L E+ +++ R+ VV+ K
Sbjct: 357 TIIESS------LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 1586 LVEFDLL-KHAKKPSFTL 1602
L ++ L+ K K+ + ++
Sbjct: 411 LHKYSLVEKQPKESTISI 428
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 6e-05
Identities = 57/462 (12%), Positives = 135/462 (29%), Gaps = 135/462 (29%)
Query: 835 FESMFREIESCIRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFLRVAGCNLDESECI 894
FE+ E + + +S E ++ D ++ S+ + EE+ I
Sbjct: 9 FET--GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI-----------DHII 55
Query: 895 SQRNNLVTLDY---VSAESDDQAPKRISNCKLFGNYKWVFGFIVTVVQRACTLIVAAVLG 951
++ + ++ ++ L NYK+ +++ ++ +
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF----LMSPIKTEQ---RQPSMM 108
Query: 952 FLNFLIKKCCTCCIISRSMFWQHCKALFIKRAVSARRDRKTIVFQLLIPAIFLLVGLLFL 1011
+ I R + + +F K VS R + Q L L
Sbjct: 109 TRMY---------IEQRDRLYNDNQ-VFAKYNVS-RLQPYLKLRQAL------------L 145
Query: 1012 KLKPHPDMLSVTFTTSNFNPLLSGGGGGGPIPFDLSWPIANEV--SKYIQ----GG--WI 1063
+L+P ++ L+ G G G +W +A +V S +Q W+
Sbjct: 146 ELRPAKNV------------LIDGVLGSGK-----TW-VALDVCLSYKVQCKMDFKIFWL 187
Query: 1064 ------------QRFKQSSYRFPNAEKALADAVDAAGPTLGPVLLSMSEYLMS-SFNESY 1110
+ ++ Y+ + +D + + + L S +
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 1111 QSRYGAIVMDDQNDDGSL-GFTVLHNSSCQHAGPTFINVMNTAILRLATGNRNMTIRTRN 1169
+V+ + + + F + SC+ + + + I +
Sbjct: 248 ------LVLLNVQNAKAWNAFNL----SCK----ILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 1170 HPLPTTQSQQLQRHDLDAFSVSIIISIAFSFIPAS------FAVAIVKEREVKAKQQQLI 1223
H + T + L + + +P ++I+ E +
Sbjct: 294 HSMTLTPDEVK---SL----LLKYLDCRPQDLPREVLTTNPRRLSIIAES--------IR 338
Query: 1224 SGVSVLSYW-------TSTYIWDFISFLFPS-------SCAI 1251
G++ W +T I ++ L P+ ++
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 1e-08
Identities = 51/260 (19%), Positives = 123/260 (47%), Gaps = 27/260 (10%)
Query: 535 ALDACEPVVEAISLDMKQQEVDGRC--------IQIRKLHKVYATKRGNCCAVNSLQLTL 586
+ AC+ + +D++ + +G+ + ++ + Y K A++ + ++
Sbjct: 311 GMAACQTLFGL--MDLETERDNGKYEAERVNGEVDVKDVTFTYQGKEKP--ALSHVSFSI 366
Query: 587 YENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEIRKGLGVCPQYD 645
+ + +AL+G +G+GKST ++ +G + G ++ + +R+ + Q
Sbjct: 367 PQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNV 426
Query: 646 ILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDE--VGLADKVNIVV--RA--LSGGM 699
LF + T+ ++ A + +E++ ++ E + ++ V+ LSGG
Sbjct: 427 HLFND-TIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQ 485
Query: 700 KRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTH---SMDEA 756
++++++ AL+ D+ V+ILDE TS +D S R + +++K + +L+ H ++++A
Sbjct: 486 RQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQA 545
Query: 757 EELGDRIAIMANGSLKCCGS 776
D I ++ G + G
Sbjct: 546 ----DEILVVDEGEIIERGR 561
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 1e-07
Identities = 44/206 (21%), Positives = 88/206 (42%), Gaps = 39/206 (18%)
Query: 1440 LDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECF 1499
+DL + D ++G VD ++++ Y G + K A+ ++FS+ G+
Sbjct: 322 MDLETERDNGKYEAERVNGEVD-----VKDVTFTYQGKE----KPALSHVSFSIPQGKTV 372
Query: 1500 GFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYL 1558
+G +G+GK+T ++ + G+ + G D+R RR Q + L
Sbjct: 373 ALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQ-NVHLFND 431
Query: 1559 TVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSF-----------------T 1601
T+ ++ YA + E++ + + A F +
Sbjct: 432 TIANNI-AYA--------AEGEYTREQIEQ--AARQAHAMEFIENMPQGLDTVIGENGTS 480
Query: 1602 LSGGNKRKLSVAIAMIGDPPIVILDE 1627
LSGG ++++++A A++ D P++ILDE
Sbjct: 481 LSGGQRQRVAIARALLRDAPVLILDE 506
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 1e-08
Identities = 48/206 (23%), Positives = 88/206 (42%), Gaps = 39/206 (18%)
Query: 1440 LDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECF 1499
LD ++ D +G ++ RN+ YPG + A+ ++ + AG+
Sbjct: 322 LDSEQEKDEGKRVIDRATGDLE-----FRNVTFTYPGREVP----ALRNINLKIPAGKTV 372
Query: 1500 GFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYL 1558
+G +G+GK+T S+I+ +G + G D+R + R + Q + L
Sbjct: 373 ALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQ-NVHLFND 431
Query: 1559 TVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSF-----------------T 1601
TV ++ YA R ++ E++ E + A F
Sbjct: 432 TVANNI-AYA--------RTEEYSREQIEE--AARMAYAMDFINKMDNGLDTIIGENGVL 480
Query: 1602 LSGGNKRKLSVAIAMIGDPPIVILDE 1627
LSGG ++++++A A++ D PI+ILDE
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDE 506
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 2e-08
Identities = 56/255 (21%), Positives = 122/255 (47%), Gaps = 31/255 (12%)
Query: 535 ALDACEPVVEAISLDMKQQEVDGRC--------IQIRKLHKVYATKRGNCCAVNSLQLTL 586
+ AC+ + LD +Q++ +G+ ++ R + Y + A+ ++ L +
Sbjct: 311 GMAACQTLFAI--LDSEQEKDEGKRVIDRATGDLEFRNVTFTYPGREVP--ALRNINLKI 366
Query: 587 YENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEIRKGLGVCPQYD 645
+ +AL+G +G+GKST S++ G L+ G ++ + +R + + Q
Sbjct: 367 PAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNV 426
Query: 646 ILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDE--VGLADKVNIVV--RA--LSGGM 699
LF + TV ++ + +E++ E+ + + + ++ ++ LSGG
Sbjct: 427 HLFND-TVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQ 485
Query: 700 KRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIIL-----LTTHSMD 754
++++++ AL+ DS ++ILDE TS +D S R + +++K R L L+T ++
Sbjct: 486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLST--IE 543
Query: 755 EAEELGDRIAIMANG 769
+A D I ++ +G
Sbjct: 544 QA----DEIVVVEDG 554
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 2e-08
Identities = 52/207 (25%), Positives = 87/207 (42%), Gaps = 42/207 (20%)
Query: 1442 LNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGF 1501
++ED D++ I ++ Y + + + S++ GE F
Sbjct: 318 IDEDYDIKNGVGAQPIEIKQGRIDI-DHVSFQYNDNEAP----ILKDINLSIEKGETVAF 372
Query: 1502 LGTNGAGKTTTLSMISGEEY-PTDGTAFIFGKDIRSDPKAA-RRLIGYCPQFDALLEYLT 1559
+G +G GK+T +++I Y T G I G +I+ + R IG Q D +L T
Sbjct: 373 VGMSGGGKSTLINLIP-RFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQ-DNILFSDT 430
Query: 1560 VQEHLELY-------------ARIKGVAEYRM------DDVVMEKLVEFDLLKHAKKPSF 1600
V+E++ L A++ ++ M D V E+ V
Sbjct: 431 VKENI-LLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGV------------- 476
Query: 1601 TLSGGNKRKLSVAIAMIGDPPIVILDE 1627
LSGG K++LS+A + +PPI+ILDE
Sbjct: 477 KLSGGQKQRLSIARIFLNNPPILILDE 503
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 2e-07
Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 17/166 (10%)
Query: 590 QILALLGHNGAGKSTTISMLVGLIP----PTTGDALVFGKNI-TADMDEIRKGLGVCPQY 644
+ +A +G +G GKST I+ LIP T+G L+ G NI +R +G+ Q
Sbjct: 368 ETVAFVGMSGGGKSTLIN----LIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQD 423
Query: 645 DILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDE--VGLADKVNIVV--RA--LSGG 698
+ILF + TV+E++ + EE++E+ + + L + V R LSGG
Sbjct: 424 NILFSD-TVKENI-LLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGG 481
Query: 699 MKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGR 744
K++LS+ + + ++ILDE TS +D S + + + + K R
Sbjct: 482 QKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDR 527
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 3e-06
Identities = 45/189 (23%), Positives = 93/189 (49%), Gaps = 24/189 (12%)
Query: 582 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPP----TTGDALVFGKNITA-DMDEI-R 635
L L ++ ++ A++G NG+GKST + L G T G GK++ A ++
Sbjct: 39 LSLDVHPGEVHAIMGPNGSGKSTLSATLAG--REDYEVTGGTVEFKGKDLLALSPEDRAG 96
Query: 636 KGLGVCPQYDILFPELTVREHLE--MFAVLKGVKEELLESV-----VAEMVDEVGLADKV 688
+G+ + QY + P ++ + L+ + AV +E L+ + E + + + +
Sbjct: 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPED- 155
Query: 689 NIVVRAL----SGG-MKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-K 742
++ R++ SGG KR L +A++ + ++ ILDE SG+D ++++ + ++
Sbjct: 156 -LLTRSVNVGFSGGEKKRNDILQMAVL-EPELCILDESDSGLDIDALKVVADGVNSLRDG 213
Query: 743 GRIILLTTH 751
R ++ TH
Sbjct: 214 KRSFIIVTH 222
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 3e-06
Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 24/187 (12%)
Query: 582 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPP----TTGDALVFGKNITA-DMDEI-R 635
+ L + + ++ AL+G NGAGKST +L G P G+ L+ G+NI DE R
Sbjct: 22 VNLVVPKGEVHALMGPNGAGKSTLGKILAG--DPEYTVERGEILLDGENILELSPDERAR 79
Query: 636 KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESV-----VAEMVDEVGLADKVNI 690
KGL + QY + P +T+ L L+ + V + ++ + +
Sbjct: 80 KGLFLAFQYPVEVPGVTIANFLR--LALQAKLGREVGVAEFWTKVKKALELLDWDES--Y 135
Query: 691 VVRAL----SGG-MKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGR 744
+ R L SGG KR L + ++ + +LDE SG+D ++++ + + ++
Sbjct: 136 LSRYLNEGFSGGEKKRNEILQLLVL-EPTYAVLDETDSGLDIDALKVVARGVNAMRGPNF 194
Query: 745 IILLTTH 751
L+ TH
Sbjct: 195 GALVITH 201
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 4e-06
Identities = 23/113 (20%), Positives = 46/113 (40%), Gaps = 8/113 (7%)
Query: 650 ELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA-DKVNIVVRALSGG------MKRK 702
E+FA K + E + + + + LSGG + +
Sbjct: 12 SKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFR 71
Query: 703 LSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMD 754
L++ + L G+ ++ILDEPT +D R ++++ K ++L +H +
Sbjct: 72 LAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE 124
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 3e-05
Identities = 23/111 (20%), Positives = 50/111 (45%), Gaps = 9/111 (8%)
Query: 1558 LTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK-HAKKPSFTLSGGNK------RKL 1610
+ E++A + E V ++ ++P LSGG + +L
Sbjct: 13 KIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRL 72
Query: 1611 SVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1661
++++ + G+ ++ILDEP+ +D +R + ++ R ++ VIL +H
Sbjct: 73 AMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERY-LKKIPQ-VILVSH 121
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 8e-06
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 1598 PSFTLSGGNKR------KLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQ 1651
P LSGG + +L++++ + G+ ++ILDEP+ +D +R + ++ R ++
Sbjct: 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERY-LKK 303
Query: 1652 GKTAVILTTHS 1662
VIL +H
Sbjct: 304 IPQ-VILVSHD 313
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 4e-05
Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 8/128 (6%)
Query: 643 QYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKR- 701
+ ++ +G E++ V + + + LSGG +
Sbjct: 197 AREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIA 256
Query: 702 -----KLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK-GRIILLTTHSMDE 755
+L++ + L G+ ++ILDEPT +D R ++++ K ++L +H +E
Sbjct: 257 LGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHD-EE 315
Query: 756 AEELGDRI 763
++ D +
Sbjct: 316 LKDAADHV 323
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 2e-04
Identities = 41/163 (25%), Positives = 68/163 (41%), Gaps = 31/163 (19%)
Query: 1483 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAA- 1541
K + +TF ++ G+ +G G+GKTT ++++ G + G DIR +++
Sbjct: 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSL 427
Query: 1542 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSF- 1600
R IG Q D +L TV+E+L Y E++ E K F
Sbjct: 428 RSSIGIVLQ-DTILFSTTVKENL-KYGN---------PGATDEEIKE--AAKLTHSDHFI 474
Query: 1601 ----------------TLSGGNKRKLSVAIAMIGDPPIVILDE 1627
LS G ++ L++ A + +P I+ILDE
Sbjct: 475 KHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDE 517
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 5e-04
Identities = 43/145 (29%), Positives = 73/145 (50%), Gaps = 11/145 (7%)
Query: 590 QILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADM--DEIRKGLGVCPQYDIL 647
Q +AL+G G+GK+T +++L+ G LV G +I + +R +G+ Q IL
Sbjct: 382 QKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIR-KIKRSSLRSSIGIVLQDTIL 440
Query: 648 FPELTVREHLEMFAVLKGVKEELLESVVAEMVDE--VGLADKVNIVVRA----LSGGMKR 701
F TV+E+L+ + EE+ E+ D L + V+ LS G ++
Sbjct: 441 F-STTVKENLK-YGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQ 498
Query: 702 KLSLGIALIGDSKVVILDEPTSGMD 726
L++ A + + K++ILDE TS +D
Sbjct: 499 LLAITRAFLANPKILILDEATSNVD 523
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1833 | ||||
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 5e-58 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 3e-55 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 7e-57 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 9e-56 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-53 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-51 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-48 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-47 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-47 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-47 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 4e-47 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 7e-46 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 5e-47 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 5e-46 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 5e-47 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-45 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 5e-47 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 4e-46 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-45 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-42 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-43 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 4e-41 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-41 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-40 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-40 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-40 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 3e-38 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 6e-38 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 3e-37 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 5e-36 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 6e-36 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-33 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 7e-36 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-34 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-35 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 3e-34 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-35 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 4e-33 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 4e-35 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-33 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 8e-16 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 3e-13 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-07 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 6e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-06 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.002 |
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 198 bits (505), Expect = 5e-58
Identities = 70/242 (28%), Positives = 124/242 (51%), Gaps = 14/242 (5%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
+ +++LRK K + ++F ++ GE FG +G NGAGKTTTL +IS P+
Sbjct: 3 VVVKDLRKRI------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSS 56
Query: 1525 GTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVME 1584
G +FGK++ +P R+LI Y P+ + E+L A + ++++V
Sbjct: 57 GIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVER 116
Query: 1585 KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVI 1644
L + K T S G RKL +A A++ +P + ILDEP++G+D + R + +++
Sbjct: 117 ATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKIL 176
Query: 1645 SRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN------FL 1698
+ Q +++++H+M E + LC RI ++ G + G+ + LK R+ F
Sbjct: 177 KQA--SQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFE 234
Query: 1699 EL 1700
E+
Sbjct: 235 EV 236
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 190 bits (484), Expect = 3e-55
Identities = 73/227 (32%), Positives = 122/227 (53%), Gaps = 5/227 (2%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+ ++ L K G + + + E +I L+G NGAGK+TT+ ++ LI P++G
Sbjct: 3 VVVKDLRKRI----GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 679
VFGKN+ + E+RK + P+ + + E+L A +E +V
Sbjct: 59 VTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERAT 118
Query: 680 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 739
+ GL +K+ V S GM RKL + AL+ + ++ ILDEPTSG+D + R +++K+
Sbjct: 119 EIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ 178
Query: 740 IKK-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 785
+ G IL+++H+M E E L DRIA++ NG++ G+ LK +Y
Sbjct: 179 ASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYK 225
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 195 bits (497), Expect = 7e-57
Identities = 70/231 (30%), Positives = 113/231 (48%), Gaps = 8/231 (3%)
Query: 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1522
+ L NL K + AV+ L +++ GE LG +G GKTTTL MI+G E P
Sbjct: 5 VEVKLENLTKRFGN------FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP 58
Query: 1523 TDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV 1582
T+G + +D+ P R I Q A+ ++TV E++ +IK + +D V
Sbjct: 59 TEGRIYFGDRDVTYLP-PKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRV 117
Query: 1583 MEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1642
+ + + LSGG +++++VA A++ +P ++++DEP + +D + M
Sbjct: 118 RWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRA 177
Query: 1643 VISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693
I +L + T I TH EA + RI +M GQL IGSP + R
Sbjct: 178 EIKKLQQKLKVT-TIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 192 bits (489), Expect = 9e-56
Identities = 63/219 (28%), Positives = 113/219 (51%), Gaps = 7/219 (3%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+++ L K + GN AVN L LT+ + + L LLG +G GK+TT+ M+ GL PT G
Sbjct: 7 VKLENLTKRF----GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 62
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 679
+++T + + + + Q ++P +TV E++ +K ++ ++ V
Sbjct: 63 IYFGDRDVT-YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 121
Query: 680 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 739
+ + + + +N LSGG ++++++ A++ + V+++DEP S +D IKK
Sbjct: 122 ELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKK 181
Query: 740 I--KKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
+ K + TH EA +GDRIA+M G L GS
Sbjct: 182 LQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGS 220
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 186 bits (473), Expect = 1e-53
Identities = 70/223 (31%), Positives = 122/223 (54%), Gaps = 6/223 (2%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I++ + KV+ A+N++ L + QI ++G +GAGKST I + L PT G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 620 ALVFGKNIT----ADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVV 675
LV G+ +T +++ + R+ +G+ Q+ L TV ++ + L ++ ++ V
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 676 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ 735
E++ VGL DK + LSGG K+++++ AL + KV++ DE TS +DP + R +
Sbjct: 122 TELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE 181
Query: 736 LIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
L+K I + G ILL TH MD + + D +A+++NG L +
Sbjct: 182 LLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDT 224
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 180 bits (458), Expect = 1e-51
Identities = 63/234 (26%), Positives = 121/234 (51%), Gaps = 7/234 (2%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1523
+I L N+ KV+ G R A+++++ V AG+ +G +G +GAGK+T + ++ E PT
Sbjct: 1 MIKLSNITKVFHQGTR--TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT 58
Query: 1524 DGTAFIFGKDI----RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMD 1579
+G+ + G+++ S+ ARR IG Q LL TV ++ L + + +
Sbjct: 59 EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVK 118
Query: 1580 DVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF 1639
V E L L LSGG K+++++A A+ +P +++ DE ++ +DP R
Sbjct: 119 RRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS 178
Query: 1640 MWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693
+ E++ ++ R G T ++L TH M+ + +C + ++ G+L + + +
Sbjct: 179 ILELLKDINRRLGLT-ILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 231
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 171 bits (435), Expect = 1e-48
Identities = 63/220 (28%), Positives = 115/220 (52%), Gaps = 7/220 (3%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
++++ LH Y G A+ + L + QI+ L+G NGAGK+TT+S + GL+ G
Sbjct: 7 LEVQSLHVYY----GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGK 62
Query: 620 ALVFGKNITADMDEIR--KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAE 677
+ G++IT + G+ + P+ +FPELTV E+L M A + KE + +
Sbjct: 63 IIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI 122
Query: 678 MVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLI 737
L +++ + LSGG ++ L++G AL+ K++++DEP+ G+ P + +++I
Sbjct: 123 FSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVI 182
Query: 738 KKIKK-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
+KI + G ILL + A ++ ++ G + G
Sbjct: 183 QKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGK 222
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 167 bits (424), Expect = 3e-47
Identities = 62/236 (26%), Positives = 110/236 (46%), Gaps = 10/236 (4%)
Query: 1460 VDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGE 1519
V + ++ +++L Y A+ + V G+ +G NGAGKTTTLS I+G
Sbjct: 2 VSDIVLEVQSLHVYYGA------IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL 55
Query: 1520 EYPTDGTAFIFGKDIRSDPKAARRLIGY--CPQFDALLEYLTVQEHLELYARIKGVAEYR 1577
G G+DI + P +G P+ + LTV E+L + A + E
Sbjct: 56 VRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGI 115
Query: 1578 MDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK 1637
D+ + L + K+ TLSGG ++ L++ A++ P ++++DEPS G+ PI
Sbjct: 116 KRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILV 175
Query: 1638 RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693
++EVI +++ ++G T ++L + A + ++ GQ+ G L
Sbjct: 176 SEVFEVIQKIN-QEGTT-ILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 169 bits (430), Expect = 1e-47
Identities = 57/266 (21%), Positives = 130/266 (48%), Gaps = 33/266 (12%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1523
+++ +L K Y G + ++ +AG+ +G++G+GK+T L I+ E P+
Sbjct: 2 KLHVIDLHKRYGG------HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS 55
Query: 1524 DGTAFIFGKDI--------------RSDPKAARRLIGYCPQFDALLEYLTVQEH-LELYA 1568
+G + G++I ++ + R + Q L ++TV E+ +E
Sbjct: 56 EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPI 115
Query: 1569 RIKGVAEYRMDDVVMEKLVEFDLLKHAK-KPSFTLSGGNKRKLSVAIAMIGDPPIVILDE 1627
++ G++++ + ++ L + + + A+ K LSGG ++++S+A A+ +P +++ DE
Sbjct: 116 QVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDE 175
Query: 1628 PSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS- 1686
P++ +DP + ++ + +GKT +++ TH M A+ + + + + G++ G
Sbjct: 176 PTSALDPELVGEVLRIM-QQLAEEGKT-MVVVTHEMGFARHVSSHVIFLHQGKIEEEGDP 233
Query: 1687 ------PQHLKTRFGNFLELEVKPTE 1706
PQ + + FL+ +K E
Sbjct: 234 EQVFGNPQSPRLQ--QFLKGSLKKLE 257
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 168 bits (427), Expect = 3e-47
Identities = 51/234 (21%), Positives = 111/234 (47%), Gaps = 21/234 (8%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+ + LHK Y + + L +++++G +G+GKST + + L P+ G
Sbjct: 3 LHVIDLHKRYGGHE----VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA 58
Query: 620 ALVFGKNIT--------------ADMDEIRKGLGVCPQYDILFPELTVREH-LEMFAVLK 664
+V G+NI + +R L + Q+ L+ +TV E+ +E +
Sbjct: 59 IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL 118
Query: 665 GVKEELLESVVAEMVDEVGLADKV-NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTS 723
G+ + + + +VG+ ++ LSGG ++++S+ AL + V++ DEPTS
Sbjct: 119 GLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTS 178
Query: 724 GMDPYSMRLTWQLIKKI-KKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
+DP + ++++++ ++G+ +++ TH M A + + + G ++ G
Sbjct: 179 ALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGD 232
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 167 bits (423), Expect = 4e-47
Identities = 64/229 (27%), Positives = 109/229 (47%), Gaps = 8/229 (3%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
+ L+N+ K + V + + GE F+G +G GK+T L MI+G E T
Sbjct: 1 VQLQNVTKAW------GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITS 54
Query: 1525 GTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVME 1584
G FI K +D A R +G Q AL +L+V E++ ++ G + ++ V +
Sbjct: 55 GDLFIGEKR-MNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQ 113
Query: 1585 KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVI 1644
L + LSGG ++++++ ++ +P + +LDEP + +D + M I
Sbjct: 114 VAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEI 173
Query: 1645 SRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693
SRL R G+T +I TH EA L +I ++ G++ +G P L
Sbjct: 174 SRLHKRLGRT-MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 163 bits (414), Expect = 7e-46
Identities = 61/219 (27%), Positives = 113/219 (51%), Gaps = 7/219 (3%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+Q++ + K + G + L ++E + + +G +G GKST + M+ GL T+GD
Sbjct: 1 VQLQNVTKAW----GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD 56
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 679
+ K + D +G+G+ Q L+P L+V E++ L G K+E++ V ++
Sbjct: 57 LFIGEKRMN-DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 115
Query: 680 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 739
+ + LA ++ +ALSGG ++++++G L+ + V +LDEP S +D I +
Sbjct: 116 EVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR 175
Query: 740 IKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
+ K GR ++ TH EA L D+I ++ G + G
Sbjct: 176 LHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGK 214
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 167 bits (423), Expect = 5e-47
Identities = 65/236 (27%), Positives = 111/236 (47%), Gaps = 12/236 (5%)
Query: 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1522
A + L ++ KV+ AV ++ V+ GE LG +G GKTTTL MI+G E P
Sbjct: 2 AGVRLVDVWKVF------GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP 55
Query: 1523 TDGTAFIFGKDIRSDPKAARRL-----IGYCPQFDALLEYLTVQEHLELYARIKGVAEYR 1577
+ G +I K + K I Q AL ++TV +++ +++ V
Sbjct: 56 SRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQE 115
Query: 1578 MDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK 1637
+D V E L + + LSGG ++++++ A++ P + ++DEP + +D +
Sbjct: 116 IDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLR 175
Query: 1638 RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693
M + +L + G T I TH EA + RI +M G L+ +GSP + +
Sbjct: 176 VRMRAELKKLQRQLGVT-TIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 164 bits (416), Expect = 5e-46
Identities = 63/224 (28%), Positives = 117/224 (52%), Gaps = 11/224 (4%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+++ + KV+ G AV + L + + + + LLG +G GK+TT+ M+ GL P+ G
Sbjct: 4 VRLVDVWKVF----GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59
Query: 620 ALVFGKNIT-----ADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESV 674
+ K + + + + + Q L+P +TV +++ L+ V + ++
Sbjct: 60 IYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR 119
Query: 675 VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTW 734
V E+ + +GL + +N R LSGG +++++LG A++ +V ++DEP S +D
Sbjct: 120 VREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMR 179
Query: 735 QLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
+KK+++ G + TH EA +GDRIA+M G L+ GS
Sbjct: 180 AELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGS 223
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 166 bits (422), Expect = 5e-47
Identities = 52/223 (23%), Positives = 108/223 (48%), Gaps = 12/223 (5%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I+++ + K Y A+ ++ L + E + ++++G +G+GKST ++++ L PT G+
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 620 ALVFGKNIT-----ADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLK---GVKEELL 671
+ R +G Q L P LT E++E+ + K + E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 672 ESVVAEMVDEVGLADKV-NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSM 730
E + L ++ N LSGG ++++++ AL + +++ D+PT +D +
Sbjct: 122 RKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTG 181
Query: 731 RLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSL 771
QL+KK+ + G+ +++ TH ++ A G+RI + +G +
Sbjct: 182 EKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEV 223
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 162 bits (411), Expect = 2e-45
Identities = 58/233 (24%), Positives = 110/233 (47%), Gaps = 13/233 (5%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1523
+I L+N+ K Y G+ A+ ++ +++ GE +G +G+GK+T L++I + PT
Sbjct: 1 MIKLKNVTKTYKMGEE--IIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT 58
Query: 1524 DGTAFIFGKDI-----RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRM 1578
+G +I K R IG+ Q L+ LT E++EL K
Sbjct: 59 EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSG 118
Query: 1579 DDVVMEKLVEFDLL----KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP 1634
++ L + + A LSGG ++++++A A+ +PPI++ D+P+ +D
Sbjct: 119 EERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDS 178
Query: 1635 IAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1687
+ +++ +L+ GKT V++ TH +N A RI + G++
Sbjct: 179 KTGEKIMQLLKKLNEEDGKT-VVVVTHDINVA-RFGERIIYLKDGEVEREEKL 229
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 167 bits (424), Expect = 5e-47
Identities = 51/233 (21%), Positives = 105/233 (45%), Gaps = 20/233 (8%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
++ + K + G A++ + +++ + + ++G NG+GKST I+++ G + G
Sbjct: 5 LRTENIVKYF----GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGR 60
Query: 620 ALVFGKNITADM--DEIRKGLGVCPQYDILFPELTVREHLEMFAVLK------------- 664
K+IT + G+ Q E+TV E+L + +
Sbjct: 61 VYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKW 120
Query: 665 GVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSG 724
KEE + ++++ + L+ + LSGG + + +G AL+ + K++++DEP +G
Sbjct: 121 IPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAG 180
Query: 725 MDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
+ P + + ++K KG L+ H +D D + +M NG + G
Sbjct: 181 VAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 233
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 164 bits (417), Expect = 4e-46
Identities = 50/246 (20%), Positives = 100/246 (40%), Gaps = 23/246 (9%)
Query: 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1522
I+ N+ K + A+ ++ SV G+ +G NG+GK+T +++I+G
Sbjct: 3 EILRTENIVKYFGE------FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA 56
Query: 1523 TDGTAFIFGKDIRSDP--KAARRLIGYCPQFDALLEYLTVQEHL-------------ELY 1567
+G + KDI + + I Q L+ +TV E+L L+
Sbjct: 57 DEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLF 116
Query: 1568 ARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDE 1627
+ E M + + L L + + LSGG + + + A++ +P ++++DE
Sbjct: 117 YKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDE 176
Query: 1628 PSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1687
P G+ P ++ + L +G T ++ H ++ + +M GQ+ G
Sbjct: 177 PIAGVAPGLAHDIFNHVLEL-KAKGIT-FLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 234
Query: 1688 QHLKTR 1693
+
Sbjct: 235 EEEIKN 240
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 162 bits (412), Expect = 2e-45
Identities = 63/235 (26%), Positives = 120/235 (51%), Gaps = 9/235 (3%)
Query: 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1522
I ++N+ KV+ GK VA+ ++ +++ GE FG LG +GAGKTT + +I+G + P
Sbjct: 2 VRIIVKNVSKVFKKGK----VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP 57
Query: 1523 TDGTAFIFGKDIRSDPKAAR----RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRM 1578
+ G + + + S+ K R IG Q AL LT E++ +++ +
Sbjct: 58 STGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEI 117
Query: 1579 DDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKR 1638
V E D+ LSG ++++++A A++ DP +++LDEP + +D +
Sbjct: 118 RKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRD 177
Query: 1639 FMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693
++ + +R G T +++ +H + A+ R+G++V G+L +G P+ L
Sbjct: 178 SARALVKEVQSRLGVT-LLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 154 bits (389), Expect = 1e-42
Identities = 54/223 (24%), Positives = 113/223 (50%), Gaps = 8/223 (3%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I ++ + KV+ K+G A++++ + + + +LG +GAGK+T + ++ GL P+TG+
Sbjct: 4 IIVKNVSKVF--KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 620 ALVFGKNITADMDEI----RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVV 675
+ + ++ I + +G+ Q L+P LT E++ + +E + V
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 676 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ 735
E+ + + +N R LSG +++++L AL+ D +++LDEP S +D
Sbjct: 122 EEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARA 181
Query: 736 LIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
L+K+++ G +L+ +H + + DR+ ++ G L G
Sbjct: 182 LVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGK 224
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 157 bits (397), Expect = 1e-43
Identities = 62/230 (26%), Positives = 122/230 (53%), Gaps = 12/230 (5%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1523
+I + +L + + ++ +L+ V++GE F LG GAGKT L +I+G P
Sbjct: 1 MIEIESLSRKWKN-------FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD 53
Query: 1524 DGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVM 1583
G + GKD +D + I + Q +L ++ V+++LE R+K + + + V+
Sbjct: 54 SGRILLDGKD-VTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKR---VL 109
Query: 1584 EKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEV 1643
+ + + + TLSGG ++++++A A++ +P I++LDEP + +DP + E+
Sbjct: 110 DTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREM 169
Query: 1644 ISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693
+S L + T V+ TH EA+ + RI +++ G+L +G P+ + +
Sbjct: 170 LSVLHKKNKLT-VLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 149 bits (378), Expect = 4e-41
Identities = 57/219 (26%), Positives = 112/219 (51%), Gaps = 11/219 (5%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I+I L + + ++++L L + + +LG GAGK+ + ++ G P +G
Sbjct: 2 IEIESLSRKWKNF-----SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR 56
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 679
L+ GK++T D+ + + Q LFP + V+++LE +K +K+ V +
Sbjct: 57 ILLDGKDVT-DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD---PKRVLDTA 112
Query: 680 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 739
++ + ++ LSGG +++++L AL+ + K+++LDEP S +DP + +++
Sbjct: 113 RDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSV 172
Query: 740 IKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
+ K +L TH EA + DRIA++ +G L G
Sbjct: 173 LHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGK 211
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 149 bits (378), Expect = 2e-41
Identities = 43/209 (20%), Positives = 95/209 (45%), Gaps = 18/209 (8%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
++IR L Y + + +T+ + ++ G NG GK+T + + + P G+
Sbjct: 3 LEIRDLSVGYDKP-----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE 57
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 679
+ G + +++ + P+ I+ +++V ++L+ A L GVK E + + +
Sbjct: 58 IIYNGV----PITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNE--IMDAL 111
Query: 680 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 739
+ V + D + LS G R++ L L+ ++++ +LD+P +D S + I +
Sbjct: 112 ESVEVLDLKK-KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILE 170
Query: 740 I--KKGRIILLTTHSMDEAEELGDRIAIM 766
I +KG +I+ + + D +
Sbjct: 171 ILKEKGIVIISSREELSYC----DVNENL 195
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 147 bits (372), Expect = 1e-40
Identities = 48/214 (22%), Positives = 93/214 (43%), Gaps = 19/214 (8%)
Query: 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1522
+ + +R+L Y K + +T +++ G F G NG GKTT L IS P
Sbjct: 1 SKLEIRDLSVGYD-------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP 53
Query: 1523 TDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV 1582
G G I + I + P+ + ++V+++L+ A + GV + + +
Sbjct: 54 LKGEIIYNGVPITK----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNE--I 107
Query: 1583 MEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1642
M+ L ++L KK LS G R++ +A ++ + I +LD+P +D +K + +
Sbjct: 108 MDALESVEVLDLKKKLGE-LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLK 166
Query: 1643 VISRLSTRQGKTAVILTTHSMNEAQALCTRIGIM 1676
I + +G +I + + + C +
Sbjct: 167 SILEILKEKGIV-IISSREEL----SYCDVNENL 195
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 148 bits (375), Expect = 1e-40
Identities = 46/240 (19%), Positives = 98/240 (40%), Gaps = 26/240 (10%)
Query: 1462 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY 1521
+ ++ L+++ + + L+ V+AGE +G NGAGK+T L+ ++G
Sbjct: 1 SIVMQLQDVAE----------STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT- 49
Query: 1522 PTDGTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDD 1580
G+ G+ + + Y Q V +L L+ K E
Sbjct: 50 SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELL--- 106
Query: 1581 VVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMI-------GDPPIVILDEPSTGMD 1633
+ L + + LSGG +++ +A ++ +++LDEP +D
Sbjct: 107 --NDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLD 164
Query: 1634 PIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693
+ + +++S L +QG +++++H +N R ++ GG++ G + + T
Sbjct: 165 VAQQSALDKILSAL-CQQGLA-IVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 147 bits (372), Expect = 2e-40
Identities = 44/242 (18%), Positives = 97/242 (40%), Gaps = 29/242 (11%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+Q++ + + + L + +IL L+G NGAGKST ++ + G+ G
Sbjct: 4 MQLQDVAESTR--------LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGS 54
Query: 620 ALVFGKNITA-DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEM 678
G+ + A ++ Q V +L + K E ++ ++
Sbjct: 55 IQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTE-----LLNDV 109
Query: 679 VDEVGLADKVNIVVRALSGGMKRKLSLGIALI-------GDSKVVILDEPTSGMDPYSMR 731
+ L DK+ LSGG +++ L ++ ++++LDEP + +D
Sbjct: 110 AGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQS 169
Query: 732 LTWQLIKKI-KKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSS--LF----LKHQY 784
+++ + ++G I++++H ++ R ++ G + G + L Y
Sbjct: 170 ALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQAY 229
Query: 785 GV 786
G+
Sbjct: 230 GM 231
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 142 bits (359), Expect = 3e-38
Identities = 55/243 (22%), Positives = 110/243 (45%), Gaps = 17/243 (6%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
I + ++ Y + + + S++ GE F+G +G GK+T +++I T
Sbjct: 17 IDIDHVSFQYNDNE----APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS 72
Query: 1525 GTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLEL------YARIKGVAEYR 1577
G I G +I+ + R IG Q D +L TV+E++ L + A+
Sbjct: 73 GQILIDGHNIKDFLTGSLRNQIGLV-QQDNILFSDTVKENILLGRPTATDEEVVEAAKMA 131
Query: 1578 MDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK 1637
+ L + + ++ LSGG K++LS+A + +PPI+ILDE ++ +D ++
Sbjct: 132 NAHDFIMNLPQGYDTEVGERGV-KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESE 190
Query: 1638 RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNF 1697
+ E + L + +T ++ H ++ +I ++ G + G+ + L + G +
Sbjct: 191 SIIQEALDVL--SKDRT-TLIVAHRLSTI-THADKIVVIENGHIVETGTHRELIAKQGAY 246
Query: 1698 LEL 1700
L
Sbjct: 247 EHL 249
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 141 bits (357), Expect = 6e-38
Identities = 58/224 (25%), Positives = 106/224 (47%), Gaps = 12/224 (5%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I I + Y + + L++ + + +A +G +G GKST I+++ T+G
Sbjct: 17 IDIDHVSFQYNDNEAP--ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 74
Query: 620 ALVFGKNITA-DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESV-VAE 677
L+ G NI +R +G+ Q +ILF TV+E++ + EE++E+ +A
Sbjct: 75 ILIDGHNIKDFLTGSLRNQIGLVQQDNILFS-DTVKENI-LLGRPTATDEEVVEAAKMAN 132
Query: 678 MVDEV-----GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRL 732
D + G +V LSGG K++LS+ + + ++ILDE TS +D S +
Sbjct: 133 AHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESI 192
Query: 733 TWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
+ + + K R L+ H + D+I ++ NG + G+
Sbjct: 193 IQEALDVLSKDRTTLIVAHRLSTI-THADKIVVIENGHIVETGT 235
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 139 bits (352), Expect = 3e-37
Identities = 60/236 (25%), Positives = 107/236 (45%), Gaps = 13/236 (5%)
Query: 550 MKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISML 609
+ ++G +Q + + Y R + + L TL ++ AL+G NG+GKST ++L
Sbjct: 3 LTPLHLEGL-VQFQDVSFAYPN-RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALL 60
Query: 610 VGLIPPTTGDALVFGKNIT-ADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKE 668
L PT G L+ GK + + + + + Q +F +++E++ K E
Sbjct: 61 QNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQKPTME 119
Query: 669 ELLESVVAEMVDEV------GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPT 722
E+ + V G +V+ LSGG ++ ++L ALI V+ILD+ T
Sbjct: 120 EITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDAT 179
Query: 723 SGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
S +D S QL+ + + R +LL T + E D I + G+++ G+
Sbjct: 180 SALDANSQLQVEQLLYESPERYSRSVLLITQHLSLV-EQADHILFLEGGAIREGGT 234
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 135 bits (342), Expect = 5e-36
Identities = 50/243 (20%), Positives = 107/243 (44%), Gaps = 13/243 (5%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
+ +++ YP + + LTF+++ GE +G NG+GK+T +++ PT
Sbjct: 12 VQFQDVSFAYPNRP---DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTG 68
Query: 1525 GTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVM 1583
G + GK + + + R + Q + + ++QE++ K E V
Sbjct: 69 GQLLLDGKPLPQYEHRYLHRQVAAVGQ-EPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 127
Query: 1584 EKLVEFDLL------KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK 1637
F + LSGG ++ +++A A+I P ++ILD+ ++ +D ++
Sbjct: 128 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 187
Query: 1638 RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNF 1697
+ +++ R ++ V+L T ++ + I + GG +R G+ Q L + G +
Sbjct: 188 LQVEQLLYESPERYSRS-VLLITQHLSLVE-QADHILFLEGGAIREGGTHQQLMEKKGCY 245
Query: 1698 LEL 1700
+
Sbjct: 246 WAM 248
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 135 bits (341), Expect = 6e-36
Identities = 53/225 (23%), Positives = 103/225 (45%), Gaps = 13/225 (5%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
++ R + Y + A+ ++ L + + +AL+G +G+GKST S++ G
Sbjct: 14 LEFRNVTFTYPGREVP--ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH 71
Query: 620 ALVFGKNITADM-DEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESV--VA 676
L+ G ++ +R + + Q LF + +A + E +E +A
Sbjct: 72 ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNI--AYARTEEYSREQIEEAARMA 129
Query: 677 EMVDEV-----GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMR 731
+D + GL + LSGG ++++++ AL+ DS ++ILDE TS +D S R
Sbjct: 130 YAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESER 189
Query: 732 LTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
+ +++K R L+ H + E D I ++ +G + G+
Sbjct: 190 AIQAALDELQKNRTSLVIAHRLSTI-EQADEIVVVEDGIIVERGT 233
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 129 bits (325), Expect = 1e-33
Identities = 52/244 (21%), Positives = 112/244 (45%), Gaps = 18/244 (7%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
+ RN+ YPG + A+ ++ + AG+ +G +G+GK+T S+I+ +
Sbjct: 14 LEFRNVTFTYPGRE----VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE 69
Query: 1525 GTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDV-- 1581
G + G D+R + R + Q L YAR + + ++++
Sbjct: 70 GHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNI--AYARTEEYSREQIEEAAR 127
Query: 1582 ---VMEKLVEFD--LLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIA 1636
M+ + + D L + LSGG ++++++A A++ D PI+ILDE ++ +D +
Sbjct: 128 MAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 187
Query: 1637 KRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN 1696
+R + + L ++ +T ++ H ++ + I ++ G + G+ L + G
Sbjct: 188 ERAIQAALDEL--QKNRT-SLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELLAQHGV 243
Query: 1697 FLEL 1700
+ +L
Sbjct: 244 YAQL 247
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 134 bits (340), Expect = 7e-36
Identities = 48/244 (19%), Positives = 102/244 (41%), Gaps = 17/244 (6%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1523
++ R++ Y ++ + ++F Q F G +G GK+T S++ PT
Sbjct: 1 MLSARHVDFAYDDSEQ-----ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT 55
Query: 1524 DGTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV 1582
G I G+ I + + R IG+ Q A++ T++E+L E +
Sbjct: 56 AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLEGDYTDEDLWQVLD 114
Query: 1583 MEKLVEFDLLKHAKKPSF------TLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIA 1636
+ F + + +SGG +++L++A A + +P I++LDE + +D +
Sbjct: 115 LAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSES 174
Query: 1637 KRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN 1696
+ + + + L +G+T ++ H ++ +I + GQ+ G L
Sbjct: 175 ESMVQKALDSL--MKGRT-TLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNELVATHPL 230
Query: 1697 FLEL 1700
+ +
Sbjct: 231 YAKY 234
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 130 bits (328), Expect = 3e-34
Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 12/224 (5%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
+ R + Y + + N I+A G +G GKST S+L PT G+
Sbjct: 2 LSARHVDFAYDDSEQ---ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE 58
Query: 620 ALVFGKNITA-DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKE------ELLE 672
+ G+ I ++ R +G Q + T+RE+L E +L
Sbjct: 59 ITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLEGDYTDEDLWQVLDLAF 117
Query: 673 SVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRL 732
+ L +V +SGG +++L++ A + + K+++LDE T+ +D S +
Sbjct: 118 ARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESM 177
Query: 733 TWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
+ + + KGR L+ H + D+I + G + G
Sbjct: 178 VQKALDSLMKGRTTLVIAHRLSTI-VDADKIYFIEKGQITGSGK 220
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 134 bits (338), Expect = 1e-35
Identities = 53/203 (26%), Positives = 95/203 (46%), Gaps = 5/203 (2%)
Query: 1488 SLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGY 1547
++ F + + LG GAGK+ L +I+G P G + G DI + RR IG+
Sbjct: 17 NVDFEM-GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI-TPLPPERRGIGF 74
Query: 1548 CPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNK 1607
PQ AL +L+V ++ R E D V E + + + LSGG +
Sbjct: 75 VPQDYALFPHLSVYRNIAYGLRNVERVE--RDRRVREMAEKLGIAHLLDRKPARLSGGER 132
Query: 1608 RKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQ 1667
+++++A A++ P +++LDEP + +D K + E + + ++ TH + EA
Sbjct: 133 QRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVP-ILHVTHDLIEAA 191
Query: 1668 ALCTRIGIMVGGQLRCIGSPQHL 1690
L + +M+ G++ G + L
Sbjct: 192 MLADEVAVMLNGRIVEKGKLKEL 214
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 130 bits (327), Expect = 3e-34
Identities = 56/188 (29%), Positives = 100/188 (53%), Gaps = 5/188 (2%)
Query: 591 ILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPE 650
LLG GAGKS + ++ G++ P G+ + G +IT + R+G+G PQ LFP
Sbjct: 26 YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT-PLPPERRGIGFVPQDYALFPH 84
Query: 651 LTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALI 710
L+V ++ E + V EM +++G+A ++ LSGG +++++L AL+
Sbjct: 85 LSVYRNIAYGLRNVERVE--RDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALV 142
Query: 711 GDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMAN 768
++++LDEP S +D + + + ++ +++ IL TH + EA L D +A+M N
Sbjct: 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLN 202
Query: 769 GSLKCCGS 776
G + G
Sbjct: 203 GRIVEKGK 210
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 135 bits (341), Expect = 1e-35
Identities = 42/204 (20%), Positives = 92/204 (45%), Gaps = 19/204 (9%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 637
+ ++ L + + ++LA+ G G+GK++ + +++G + + G G+
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR------------ 98
Query: 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVV----R 693
+ C Q+ + P T++E++ + + + D A++ N V+
Sbjct: 99 VSFCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 157
Query: 694 ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ-LIKKIKKGRIILLTTHS 752
LSGG + ++SL A+ D+ + +LD P +D ++ ++ + K+ + +L T
Sbjct: 158 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 217
Query: 753 MDEAEELGDRIAIMANGSLKCCGS 776
M E D+I I+ GS G+
Sbjct: 218 M-EHLRKADKILILHQGSSYFYGT 240
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 128 bits (322), Expect = 4e-33
Identities = 45/224 (20%), Positives = 87/224 (38%), Gaps = 20/224 (8%)
Query: 1481 DAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKA 1540
+ ++ +++ GE G+ G+GKT+ L +I GE ++G G+
Sbjct: 47 VGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR-------- 98
Query: 1541 ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK----HAK 1596
+ +C QF ++ T++E++ + + +
Sbjct: 99 ----VSFCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLG 153
Query: 1597 KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAV 1656
+ TLSGG + ++S+A A+ D + +LD P +D + ++E KT
Sbjct: 154 EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC-VCKLMANKT-R 211
Query: 1657 ILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1700
IL T M E +I I+ G G+ L++ +F
Sbjct: 212 ILVTSKM-EHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSK 254
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 132 bits (334), Expect = 4e-35
Identities = 52/223 (23%), Positives = 111/223 (49%), Gaps = 10/223 (4%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I R + Y ++++ L++ + +++ ++G +G+GKST ++ P G
Sbjct: 2 ITFRNIRFRYKPDSPV--ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 620 ALVFGKNIT-ADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEM 678
L+ G ++ AD + +R+ +GV Q ++L ++ +++ + V++ + + +A
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 679 VDEV-----GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLT 733
D + G V LSGG ++++++ AL+ + K++I DE TS +D S +
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 734 WQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 776
+ + KI KGR +++ H + + DRI +M G + G
Sbjct: 179 MRNMHKICKGRTVIIIAHRLSTV-KNADRIIVMEKGKIVEQGK 220
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 128 bits (324), Expect = 1e-33
Identities = 55/232 (23%), Positives = 107/232 (46%), Gaps = 15/232 (6%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
I RN+R Y V + ++ S++ GE G +G +G+GK+T +I P +
Sbjct: 2 ITFRNIRFRYKPDS----PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 57
Query: 1525 GTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVM 1583
G I G D+ DP RR +G Q D +L ++ +++ L V + +
Sbjct: 58 GQVLIDGHDLALADPNWLRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSVEKVIYAAKLA 116
Query: 1584 EKLVEFDLLKHAKKPSF-----TLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKR 1638
L+ LSGG ++++++A A++ +P I+I DE ++ +D ++
Sbjct: 117 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 176
Query: 1639 FMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
+ + ++ +G+T VI+ H ++ + RI +M G++ G + L
Sbjct: 177 VIMRNMHKI--CKGRT-VIIIAHRLSTVK-NADRIIVMEKGKIVEQGKHKEL 224
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 75.0 bits (183), Expect = 8e-16
Identities = 20/180 (11%), Positives = 38/180 (21%), Gaps = 25/180 (13%)
Query: 592 LALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPEL 651
+ + G G GK+T + +V + + +F
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 652 TVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIG 711
+ + VN+ + + A
Sbjct: 63 FFTSKKLVGSY------------------------GVNVQYFEELAIPILERAYREAKKD 98
Query: 712 DSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 771
KV+I+DE ++ T D L I + L
Sbjct: 99 RRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVH-PLVKEIRRLPGAVL 157
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 67.7 bits (164), Expect = 3e-13
Identities = 21/182 (11%), Positives = 40/182 (21%), Gaps = 28/182 (15%)
Query: 1500 GFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLT 1559
G G GKTT + I + K I +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKF 63
Query: 1560 VQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1619
+ F + + A
Sbjct: 64 FTSK------------------------KLVGSYGVNVQYFEELAIPILERAYREAKKDR 99
Query: 1620 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGG 1679
++I+DE G + + +++ ++ V+ T + L I + G
Sbjct: 100 RKVIIIDEI--GKMELFSKKFRDLVRQIMHDPNVN-VVATIPIRDVH-PLVKEIRRLPGA 155
Query: 1680 QL 1681
L
Sbjct: 156 VL 157
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.5 bits (93), Expect = 0.002
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
Query: 1610 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH---SMNEA 1666
L AI P +LDE +D + + I R I+ + ++
Sbjct: 345 LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPD--LQFIVISLKNTMFEKS 402
Query: 1667 QAL 1669
AL
Sbjct: 403 DAL 405
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1833 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.85 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.82 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.67 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.54 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.54 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.5 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.34 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.24 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.17 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 99.16 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.95 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.81 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.52 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 98.29 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.11 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.99 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.88 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.8 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.66 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.65 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.6 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 96.45 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.3 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.29 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.25 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.18 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.16 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.12 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 96.02 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.93 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.93 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.93 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.7 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.69 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.42 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.41 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.36 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.28 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.24 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.23 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 95.22 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.21 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.19 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.18 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.12 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.06 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.06 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.05 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.01 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 94.96 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.91 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 94.87 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 94.82 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.81 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 94.76 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 94.75 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 94.7 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.67 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 94.58 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.53 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 94.47 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.43 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 94.3 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 94.21 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 94.2 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.19 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 94.0 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 94.0 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 93.97 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.95 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 93.94 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 93.93 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 93.79 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.72 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 93.63 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 93.63 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 93.61 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 93.46 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.44 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.27 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 93.26 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 93.21 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 93.02 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 93.01 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 92.96 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 92.85 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 92.78 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 92.78 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 92.63 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 92.59 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 92.56 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 92.55 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 92.54 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 92.47 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 92.43 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 92.4 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 92.39 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 92.27 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 92.26 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 92.26 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 92.22 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 92.15 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 92.15 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 92.13 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 92.1 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 92.05 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 92.03 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 91.99 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 91.98 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 91.96 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 91.83 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 91.76 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 91.75 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 91.69 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 91.65 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 91.64 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 91.63 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 91.59 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 91.57 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 91.53 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.51 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 91.5 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 91.48 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 91.46 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.46 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 91.4 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 91.39 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 91.36 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 91.35 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 91.27 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 91.25 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 91.18 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 91.16 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 91.15 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 91.12 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 91.07 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 91.07 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 90.99 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 90.95 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 90.86 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 90.71 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 90.7 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 90.66 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 90.64 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 90.61 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 90.61 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 90.55 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 90.51 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 90.4 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 90.29 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 90.28 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 90.24 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 90.23 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 90.13 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 90.11 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 90.1 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 90.08 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 90.04 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 90.01 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 89.97 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 89.91 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 89.91 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 89.91 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 89.88 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 89.88 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 89.87 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 89.63 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 89.49 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 89.47 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 89.33 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 89.3 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 89.27 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 89.24 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 89.22 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.17 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 89.16 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 89.1 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 89.05 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 89.04 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 89.03 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 88.96 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 88.92 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 88.92 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 88.85 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 88.72 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 88.72 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 88.69 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 88.64 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 88.61 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 88.46 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 88.46 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 88.46 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 88.43 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 88.36 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 88.2 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 88.14 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 88.14 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 88.13 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 88.1 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 88.08 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 88.07 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 88.06 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 87.95 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 87.93 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 87.88 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 87.86 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 87.84 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 87.81 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 87.8 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 87.75 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 87.74 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 87.63 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 87.55 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 87.42 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 87.42 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 87.41 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 87.39 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 87.37 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 87.35 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 87.33 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 87.31 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 87.05 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 86.87 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 86.87 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 86.71 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 86.68 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 86.63 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 86.56 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 86.42 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 86.42 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 86.38 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 86.35 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 86.22 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 86.15 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 86.11 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 86.11 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 86.11 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 86.1 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 86.04 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 85.99 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 85.99 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 85.98 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 85.98 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 85.85 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 85.83 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 85.71 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 85.66 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 85.57 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 85.51 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 85.39 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 85.37 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 85.3 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 85.21 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 85.13 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 85.12 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 85.03 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 84.9 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 84.9 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 84.89 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 84.85 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 84.8 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 84.79 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 84.76 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 84.68 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 84.67 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 84.59 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 84.57 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 84.57 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 84.51 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 84.49 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 84.44 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 84.41 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 84.39 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 84.33 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 84.3 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 84.2 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 84.12 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 83.96 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 83.92 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 83.88 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 83.8 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 83.73 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 83.64 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 83.56 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 83.52 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 83.5 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 83.42 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 83.3 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 83.17 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 83.15 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 83.12 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 82.99 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 82.93 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 82.9 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 82.86 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 82.78 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 82.75 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 82.71 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 82.69 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 82.62 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 82.56 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 82.56 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 82.52 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 82.48 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 82.43 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 82.39 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 82.36 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 82.23 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 82.16 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 82.01 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 81.95 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 81.9 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 81.86 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 81.76 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 81.71 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 81.7 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 81.55 | |
| d1br2a2 | 710 | Myosin S1, motor domain {Chicken (Gallus gallus), | 81.52 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 81.3 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 81.16 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 80.97 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 80.93 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 80.89 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 80.85 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 80.8 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 80.7 | |
| d1d0xa2 | 712 | Myosin S1, motor domain {Dictyostelium discoideum | 80.63 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 80.45 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 80.34 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 80.3 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=435.59 Aligned_cols=222 Identities=31% Similarity=0.441 Sum_probs=180.8
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHCC
Q ss_conf 19998689991898655654213333599758819999959999689999999199889950799968508999687604
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1543 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~ 1543 (1833)
.|+++||+|.|+ ++.||+||||+|++||++||+|||||||||+++||+|+++|++|+|.++|.++.+.+. .++
T Consensus 6 ~I~v~nlsk~yg------~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~-~~r 78 (239)
T d1v43a3 6 EVKLENLTKRFG------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPP-KDR 78 (239)
T ss_dssp CEEEEEEEEEET------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG-GGG
T ss_pred EEEEEEEEEEEC------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCC-CCC
T ss_conf 499987999999------9999813067887998999999999829999999975899987879991641354770-001
Q ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 42998058987989999999999999709990559999999998749962018898998946999999999990699989
Q 000224 1544 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1623 (1833)
Q Consensus 1544 ~ig~~pQ~~~l~~~ltv~e~l~~~~~l~g~~~~~~~~~v~~~l~~~~L~~~~~~~~~~lSgG~krrl~iA~al~~~p~il 1623 (1833)
+||||||++.+++.+||+||+.+.+++++.++.++++++.++++.++|.++.++++.+||||||||++||+||+.+|++|
T Consensus 79 ~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iL 158 (239)
T d1v43a3 79 NISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVL 158 (239)
T ss_dssp TEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEE
T ss_pred EEEEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHCCCCCCE
T ss_conf 58998003353422209999999998739999999999999998759855660995469999988999976640499824
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 9938789989999999999999987416996999963778889977679999989999996596679751
Q 000224 1624 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693 (1833)
Q Consensus 1624 lLDEPt~GlDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~i~~~gs~~~l~~~ 1693 (1833)
+|||||+||||.+++.+|++|++++++.| +|||++||+|+++..+||||++|++|++++.|+++++.++
T Consensus 159 llDEPts~LD~~~~~~i~~ll~~l~~~~g-~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 227 (239)
T d1v43a3 159 LMDEPLSNLDAKLRVAMRAEIKKLQQKLK-VTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227 (239)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 30688666898999899999999987319-8079994899999986999999989999998599999868
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=431.04 Aligned_cols=222 Identities=29% Similarity=0.435 Sum_probs=145.3
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHH----
Q ss_conf 1999868999189865565421333359975881999995999968999999919988995079996850899968----
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPK---- 1539 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~G~~~p~~G~i~i~G~~i~~~~~---- 1539 (1833)
.|+++||+|.|+ ++.||+|+||+|++||++||+|||||||||++++|+|+++|++|+|.++|.++.....
T Consensus 3 ~i~v~nl~k~yg------~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~ 76 (240)
T d1g2912 3 GVRLVDVWKVFG------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFV 76 (240)
T ss_dssp EEEEEEEEEEET------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEEC
T ss_pred CEEEEEEEEEEC------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHC
T ss_conf 189986999989------99998560668869989999999998099999999648788989899999980356644424
Q ss_pred -HHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf -7604429980589879899999999999997099905599999999987499620188989989469999999999906
Q 000224 1540 -AARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIG 1618 (1833)
Q Consensus 1540 -~~~~~ig~~pQ~~~l~~~ltv~e~l~~~~~l~g~~~~~~~~~v~~~l~~~~L~~~~~~~~~~lSgG~krrl~iA~al~~ 1618 (1833)
..+++|||+||++++++.+||+||+.+...+++.+..++++++.++++.++|.+..++++++||||||||++||+||+.
T Consensus 77 ~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~ 156 (240)
T d1g2912 77 PPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVR 156 (240)
T ss_dssp CGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHC
T ss_conf 53225512002212223101166763306877299989999999999987599667629933499999999999999826
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 99989993878998999999999999998741699699996377888997767999998999999659667975
Q 000224 1619 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1619 ~p~illLDEPt~GlDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~i~~~gs~~~l~~ 1692 (1833)
+|++|+|||||+||||.+++.+|+.|++++++.| .|||++||+|+++..+|||+++|.+|++++.|+++++..
T Consensus 157 ~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g-~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 157 KPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG-VTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp CCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 9988982588765698999899999999986369-889999599999999699999998999999859999982
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=429.02 Aligned_cols=223 Identities=31% Similarity=0.536 Sum_probs=143.3
Q ss_pred EEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHCCC
Q ss_conf 99986899918986556542133335997588199999599996899999991998899507999685089996876044
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1544 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~ 1544 (1833)
|+++||+|.|+ ++.||+|+||+|++||++||+|||||||||++++|+|+++|++|+|.++|.++.+.+.+.++.
T Consensus 3 I~v~nl~k~yg------~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~ 76 (238)
T d1vpla_ 3 VVVKDLRKRIG------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKL 76 (238)
T ss_dssp EEEEEEEEEET------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTT
T ss_pred EEEEEEEEEEC------CEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHH
T ss_conf 89995899999------999980625688489799999999999999999996698878887999867244683988721
Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 29980589879899999999999997099905599999999987499620188989989469999999999906999899
Q 000224 1545 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1624 (1833)
Q Consensus 1545 ig~~pQ~~~l~~~ltv~e~l~~~~~l~g~~~~~~~~~v~~~l~~~~L~~~~~~~~~~lSgG~krrl~iA~al~~~p~ill 1624 (1833)
+|||||...+++++|+.||+.+++.+++.++.+..+.++++++.++|.+..++++++||||||||+++|+||+++|++++
T Consensus 77 i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~ill 156 (238)
T d1vpla_ 77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAI 156 (238)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 86750015468786677888989986179989999999999986797888850453379989899999999865999887
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHHCC
Q ss_conf 93878998999999999999998741699699996377888997767999998999999659667975118
Q 000224 1625 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 1695 (1833)
Q Consensus 1625 LDEPt~GlDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~i~~~gs~~~l~~~~~ 1695 (1833)
|||||+||||.+++.+|++|++++ ++| +|||++||+|+|++.+||||++|++|++++.|+++++++++.
T Consensus 157 LDEPt~gLD~~~~~~i~~~i~~~~-~~g-~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~ 225 (238)
T d1vpla_ 157 LDEPTSGLDVLNAREVRKILKQAS-QEG-LTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYK 225 (238)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHH-HTT-CEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTT
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHH-HCC-CEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 337988979899999999999999-659-989999598999999699999998999999928999986528
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=428.03 Aligned_cols=224 Identities=33% Similarity=0.506 Sum_probs=215.9
Q ss_pred EEEEEEEEEEECCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCE
Q ss_conf 09999669994277884010132358884780999946999975799998809999995159996712782178860446
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 638 (1833)
Q Consensus 559 ~i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~di~~~~~~~r~~i 638 (1833)
+|+++||+|.| |++.||+|+||++++|||+||+||||||||||+++|+|+++|++|+|.++|+|+.......|+.+
T Consensus 2 aI~v~nl~k~y----g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i 77 (238)
T d1vpla_ 2 AVVVKDLRKRI----GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 77 (238)
T ss_dssp CEEEEEEEEEE----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTE
T ss_pred CEEEEEEEEEE----CCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHHE
T ss_conf 78999589999----99999806256884897999999999999999999966988788879998672446839887218
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 99826898899999999999999960999788999999999983998300632378895689999999997189949998
Q 000224 639 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVIL 718 (1833)
Q Consensus 639 G~cpQ~~~L~~~LTv~EhL~~~~~lkg~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSGG~KrkLsiA~Alig~p~iliL 718 (1833)
|||||.+.+|+.+|+.||+.+++.+.+.+..+.++.++++++.++|.+..++++++||||||||+++|+||+++|++++|
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illL 157 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAIL 157 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 67500154687866778889899861799899999999999867978888504533799898999999998659998873
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHHHCC
Q ss_conf 28889999999999999999983-896999970797799853389999609879962697789865099
Q 000224 719 DEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGV 786 (1833)
Q Consensus 719 DEPTsGLDp~srr~iw~~l~~~~-~grtiiltTH~mdEad~l~DrI~Il~~G~l~~~Gs~~~Lk~~~g~ 786 (1833)
||||+||||.+++.+|++|++++ +|+|||++||+|+|++.+||||++|++|+++..|++.+++.+++.
T Consensus 158 DEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~~ 226 (238)
T d1vpla_ 158 DEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKA 226 (238)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCC
T ss_conf 379889798999999999999996599899995989999996999999989999999289999865287
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=429.32 Aligned_cols=224 Identities=28% Similarity=0.463 Sum_probs=209.6
Q ss_pred CEEEEEEEEEEECCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCH-----H
Q ss_conf 30999966999427788401013235888478099994699997579999880999999515999671278217-----8
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADM-----D 632 (1833)
Q Consensus 558 ~~i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~di~~~~-----~ 632 (1833)
..|+++||+|.| |++.||+|+||++++||+++|+|||||||||++++|+|+.+|++|+|.++|.++.... .
T Consensus 2 ~~i~v~nl~k~y----g~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~ 77 (240)
T d1g2912 2 AGVRLVDVWKVF----GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVP 77 (240)
T ss_dssp EEEEEEEEEEEE----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECC
T ss_pred CCEEEEEEEEEE----CCEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCC
T ss_conf 818998699998----9999985606688699899999999980999999996487889898999999803566444245
Q ss_pred HHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 86044699826898899999999999999960999788999999999983998300632378895689999999997189
Q 000224 633 EIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGD 712 (1833)
Q Consensus 633 ~~r~~iG~cpQ~~~L~~~LTv~EhL~~~~~lkg~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSGG~KrkLsiA~Alig~ 712 (1833)
..|+.+|++||++.||+.+||+||+.+...+++.+..+.++++.++++.++|.+.+++++.+||||||||++||+||+.+
T Consensus 78 ~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~ 157 (240)
T d1g2912 78 PKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRK 157 (240)
T ss_dssp GGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTC
T ss_pred CCCCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCC
T ss_conf 32255120022122231011667633068772999899999999999875996676299334999999999999998269
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHH-C-CCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHHHC
Q ss_conf 94999828889999999999999999983-8-9699997079779985338999960987996269778986509
Q 000224 713 SKVVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 785 (1833)
Q Consensus 713 p~iliLDEPTsGLDp~srr~iw~~l~~~~-~-grtiiltTH~mdEad~l~DrI~Il~~G~l~~~Gs~~~Lk~~~g 785 (1833)
|++++|||||+||||.+++.+|++|++++ + |.|||++||+|+||..+||||++|.+|++++.|++.++..+..
T Consensus 158 P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~~P~ 232 (240)
T d1g2912 158 PQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPA 232 (240)
T ss_dssp CSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 988982588765698999899999999986369889999599999999699999998999999859999982899
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=433.87 Aligned_cols=222 Identities=28% Similarity=0.414 Sum_probs=209.5
Q ss_pred CEEEEEEEEEEECCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCC
Q ss_conf 30999966999427788401013235888478099994699997579999880999999515999671278217886044
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 637 (1833)
Q Consensus 558 ~~i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~di~~~~~~~r~~ 637 (1833)
..|+++||+|.| |++.||+|+||++++||+++|+|||||||||++++|+|+++|++|+|.++|.|+.... ..++.
T Consensus 5 ~~I~v~nlsk~y----g~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~-~~~r~ 79 (239)
T d1v43a3 5 VEVKLENLTKRF----GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLP-PKDRN 79 (239)
T ss_dssp CCEEEEEEEEEE----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-GGGGT
T ss_pred CEEEEEEEEEEE----CCEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCC-CCCCE
T ss_conf 749998799999----9999981306788799899999999982999999997589998787999164135477-00015
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 69982689889999999999999996099978899999999998399830063237889568999999999718994999
Q 000224 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVI 717 (1833)
Q Consensus 638 iG~cpQ~~~L~~~LTv~EhL~~~~~lkg~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSGG~KrkLsiA~Alig~p~ili 717 (1833)
+|||||++.||+.+||+||+.+++.+++.++.+.+++++++++.++|.+.+++++.+||||||||+++|+||+.+|++++
T Consensus 80 ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLl 159 (239)
T d1v43a3 80 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLL 159 (239)
T ss_dssp EEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEE
T ss_pred EEEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHCCCCCCEE
T ss_conf 89980033534222099999999987399999999999999987598556609954699999889999766404998243
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHH-C-CCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHHH
Q ss_conf 828889999999999999999983-8-969999707977998533899996098799626977898650
Q 000224 718 LDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQY 784 (1833)
Q Consensus 718 LDEPTsGLDp~srr~iw~~l~~~~-~-grtiiltTH~mdEad~l~DrI~Il~~G~l~~~Gs~~~Lk~~~ 784 (1833)
|||||+||||.+|+.+|++|++++ + |+|+|++||+|+||..+||||++|.+|++++.|++.++.++.
T Consensus 160 lDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P 228 (239)
T d1v43a3 160 MDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 228 (239)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 068866689899989999999998731980799948999999869999999899999985999998689
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=430.40 Aligned_cols=220 Identities=29% Similarity=0.462 Sum_probs=152.3
Q ss_pred EEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHCCC
Q ss_conf 99986899918986556542133335997588199999599996899999991998899507999685089996876044
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1544 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~ 1544 (1833)
|+++|++|.|+ ++.||+|+||+|++||++||+|||||||||+++||+|+++|++|+|.++|.++.... ..+++
T Consensus 1 Iev~nv~k~yg------~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~-~~~r~ 73 (232)
T d2awna2 1 VQLQNVTKAWG------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTP-PAERG 73 (232)
T ss_dssp EEEEEEEEEET------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSC-GGGTC
T ss_pred CEEEEEEEEEC------CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCC-HHHCE
T ss_conf 99999999989------999981117788699899999899982999999996587888888999999778886-44432
Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 29980589879899999999999997099905599999999987499620188989989469999999999906999899
Q 000224 1545 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1624 (1833)
Q Consensus 1545 ig~~pQ~~~l~~~ltv~e~l~~~~~l~g~~~~~~~~~v~~~l~~~~L~~~~~~~~~~lSgG~krrl~iA~al~~~p~ill 1624 (1833)
||||||++.+++.+|++||+.+...++|.++++.++++.++++.++|.++.++++.+||||||||++||+||+++|++|+
T Consensus 74 ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~ill 153 (232)
T d2awna2 74 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFL 153 (232)
T ss_dssp EEEECSSCCC---------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEE
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 22343342026433378897899987599889999999999975788656648965699999999999999703998899
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 93878998999999999999998741699699996377888997767999998999999659667975
Q 000224 1625 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1625 LDEPt~GlDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~i~~~gs~~~l~~ 1692 (1833)
|||||+||||.+++.+|+.|+++.++.| +|||++||+|+|+..+|||+++|++|++++.|+++++.+
T Consensus 154 lDEPts~LD~~~~~~i~~~l~~l~~~~g-~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~ 220 (232)
T d2awna2 154 LDEPLSNLDAALRVQMRIEISRLHKRLG-RTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 220 (232)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHHSC-CEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHH
T ss_conf 7588878898899899999999987429-879999489999999699999997999999808999973
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=431.41 Aligned_cols=219 Identities=29% Similarity=0.497 Sum_probs=207.2
Q ss_pred EEEEEEEEEECCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCEE
Q ss_conf 99996699942778840101323588847809999469999757999988099999951599967127821788604469
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 639 (1833)
Q Consensus 560 i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~di~~~~~~~r~~iG 639 (1833)
|+++||+|.| +++.||+|+||++++||+++|+|||||||||++++|+|+.+|++|+|.++|.++.. ....|+.||
T Consensus 1 Iev~nv~k~y----g~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~-~~~~~r~ig 75 (232)
T d2awna2 1 VQLQNVTKAW----GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMND-TPPAERGVG 75 (232)
T ss_dssp EEEEEEEEEE----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTT-SCGGGTCEE
T ss_pred CEEEEEEEEE----CCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCC-CCHHHCEEE
T ss_conf 9999999998----99999811177886998999998999829999999965878888889999997788-864443222
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 98268988999999999999999609997889999999999839983006323788956899999999971899499982
Q 000224 640 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 719 (1833)
Q Consensus 640 ~cpQ~~~L~~~LTv~EhL~~~~~lkg~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSGG~KrkLsiA~Alig~p~iliLD 719 (1833)
||||++.||+.+||+||+.+...+++.++++.+++++++++.++|.+..++++.+||||||||+++|+||+.+|++++||
T Consensus 76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlD 155 (232)
T d2awna2 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD 155 (232)
T ss_dssp EECSSCCC---------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEE
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 34334202643337889789998759988999999999997578865664896569999999999999970399889975
Q ss_pred CCCCCCCHHHHHHHHHHHHHH-H-CCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 888999999999999999998-3-896999970797799853389999609879962697789865
Q 000224 720 EPTSGMDPYSMRLTWQLIKKI-K-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 783 (1833)
Q Consensus 720 EPTsGLDp~srr~iw~~l~~~-~-~grtiiltTH~mdEad~l~DrI~Il~~G~l~~~Gs~~~Lk~~ 783 (1833)
|||+||||.+++.+|++|+++ + .|+|+|++||+|+||..+||||++|.+|++++.|++.++.+.
T Consensus 156 EPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 221 (232)
T d2awna2 156 EPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221 (232)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHC
T ss_conf 888788988998999999999874298799994899999996999999979999998089999738
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=423.20 Aligned_cols=226 Identities=27% Similarity=0.463 Sum_probs=185.4
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCC-CH---H
Q ss_conf 1999868999189865565421333359975881999995999968999999919988995079996850899-96---8
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DP---K 1539 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~G~~~p~~G~i~i~G~~i~~-~~---~ 1539 (1833)
+|+++||+|.|+.+. +...||+|+||+|++||++||+|||||||||++++|.|+.+|++|+|.++|.++.. +. .
T Consensus 1 mi~v~nlsk~y~~~~--~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~ 78 (240)
T d3dhwc1 1 MIKLSNITKVFHQGT--RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 78 (240)
T ss_dssp CEEEEEEEEEEECSS--CEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHH
T ss_pred CEEEEEEEEEECCCC--EEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHH
T ss_conf 979982799969998--148986150578869979999899989888999987588636677328867685208755511
Q ss_pred HHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 76044299805898798999999999999970999055999999999874996201889899894699999999999069
Q 000224 1540 AARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1619 (1833)
Q Consensus 1540 ~~~~~ig~~pQ~~~l~~~ltv~e~l~~~~~l~g~~~~~~~~~v~~~l~~~~L~~~~~~~~~~lSgG~krrl~iA~al~~~ 1619 (1833)
..|+++||+||+..+++.+||+||+.+..+++|.++++.++++.++++.++|.+..++++.+||||||||++||+||+.+
T Consensus 79 ~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~ 158 (240)
T d3dhwc1 79 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASN 158 (240)
T ss_dssp HHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTC
T ss_pred HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCHHHCCHHHHHHHHHHHHHCCC
T ss_conf 55416643022522279964999999999984999899999999999976990355489434999999899986401058
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 9989993878998999999999999998741699699996377888997767999998999999659667975
Q 000224 1620 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1620 p~illLDEPt~GlDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~i~~~gs~~~l~~ 1692 (1833)
|++|+|||||+||||.+++.+++.|++++++.| .|||++||+|+++..+|||+++|.+|++++.|+++++.+
T Consensus 159 P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g-~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 159 PKVLLCDEATSALDPATTRSILELLKDINRRLG-LTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp CSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHC-CEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 986874465565898885679999999986469-789998389999998699999997999999879999972
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=426.07 Aligned_cols=225 Identities=26% Similarity=0.446 Sum_probs=187.1
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCH----H
Q ss_conf 199986899918986556542133335997588199999599996899999991998899507999685089996----8
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDP----K 1539 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~G~~~p~~G~i~i~G~~i~~~~----~ 1539 (1833)
.|+++||+|.|++ ++..||+|+||+|++||++||+|||||||||+++||.|+++|++|+|.++|.++.... .
T Consensus 3 ~i~v~nlsk~y~~----g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~ 78 (242)
T d1oxxk2 3 RIIVKNVSKVFKK----GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVP 78 (242)
T ss_dssp CEEEEEEEEEEGG----GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSC
T ss_pred EEEEEEEEEEECC----CCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCC
T ss_conf 8999757999889----998998040789879989999989998099999999758688874599999995137311153
Q ss_pred HHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 76044299805898798999999999999970999055999999999874996201889899894699999999999069
Q 000224 1540 AARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1619 (1833)
Q Consensus 1540 ~~~~~ig~~pQ~~~l~~~ltv~e~l~~~~~l~g~~~~~~~~~v~~~l~~~~L~~~~~~~~~~lSgG~krrl~iA~al~~~ 1619 (1833)
..+++|||+||+.++++.+||+||+.+..+.++.++++.++++.++++.++|.+++++++.+||||||||++||+||+.+
T Consensus 79 ~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~ 158 (242)
T d1oxxk2 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKD 158 (242)
T ss_dssp GGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred HHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHCCHHHCCHHHHHHHHHHHHHHHC
T ss_conf 12045147730433466665777766556761379999999999998665917666489545999998589987577604
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 99899938789989999999999999987416996999963778889977679999989999996596679751
Q 000224 1620 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693 (1833)
Q Consensus 1620 p~illLDEPt~GlDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~i~~~gs~~~l~~~ 1693 (1833)
|++|+|||||+||||.+++.++++|++++++.| .|||++||+|+++.++|||+++|++|++++.|+++++.+.
T Consensus 159 P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g-~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~ 231 (242)
T d1oxxk2 159 PSLLLLDEPFSNLDARMRDSARALVKEVQSRLG-VTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231 (242)
T ss_dssp CSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHC-CEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 661454478667998998899899999986359-8799997999999996999999989999998699999868
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=422.72 Aligned_cols=225 Identities=31% Similarity=0.446 Sum_probs=211.5
Q ss_pred EEEEEEEEEEECCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCC----CHHHH
Q ss_conf 09999669994277884010132358884780999946999975799998809999995159996712782----17886
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA----DMDEI 634 (1833)
Q Consensus 559 ~i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~di~~----~~~~~ 634 (1833)
.|+++||+|.|..+++...||+|+||++++||+++++|||||||||++++|+|+.+|++|+|.++|.++.. +....
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred CEEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHH
T ss_conf 97998279996999814898615057886997999989998988899998758863667732886768520875551155
Q ss_pred HCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 04469982689889999999999999996099978899999999998399830063237889568999999999718994
Q 000224 635 RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSK 714 (1833)
Q Consensus 635 r~~iG~cpQ~~~L~~~LTv~EhL~~~~~lkg~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSGG~KrkLsiA~Alig~p~ 714 (1833)
|+.+|++||+..||+.+||+||+.+...+.+.+.++.++++.++++.+||.+..++.+.+||||||||++||+||+.+|+
T Consensus 81 rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~ 160 (240)
T d3dhwc1 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK 160 (240)
T ss_dssp HHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCS
T ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCHHHCCHHHHHHHHHHHHHCCCCC
T ss_conf 41664302252227996499999999998499989999999999997699035548943499999989998640105898
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHH-C-CCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 999828889999999999999999983-8-96999970797799853389999609879962697789865
Q 000224 715 VVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 783 (1833)
Q Consensus 715 iliLDEPTsGLDp~srr~iw~~l~~~~-~-grtiiltTH~mdEad~l~DrI~Il~~G~l~~~Gs~~~Lk~~ 783 (1833)
+++|||||+||||.+++.+|++|++++ + |.|+|++||+|++|..+||||++|.+|++++.|++.++.++
T Consensus 161 lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~~ 231 (240)
T d3dhwc1 161 VLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 231 (240)
T ss_dssp EEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTCS
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 68744655658988856799999999864697899983899999986999999979999998799999728
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=419.33 Aligned_cols=218 Identities=28% Similarity=0.513 Sum_probs=177.0
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHCC
Q ss_conf 19998689991898655654213333599758819999959999689999999199889950799968508999687604
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1543 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~ 1543 (1833)
+|+++||+|+|++ .||+||||+|++||++||+|||||||||++++|+|+++|++|+|.++|.++.... ..++
T Consensus 1 mi~v~nlsk~y~~-------~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~-~~~r 72 (229)
T d3d31a2 1 MIEIESLSRKWKN-------FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS-PEKH 72 (229)
T ss_dssp CEEEEEEEEECSS-------CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSC-HHHH
T ss_pred CEEEEEEEEEECC-------EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC-HHHH
T ss_conf 9899989999499-------7884337898799899999899982999999996476888788999567346521-6574
Q ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 42998058987989999999999999709990559999999998749962018898998946999999999990699989
Q 000224 1544 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1623 (1833)
Q Consensus 1544 ~ig~~pQ~~~l~~~ltv~e~l~~~~~l~g~~~~~~~~~v~~~l~~~~L~~~~~~~~~~lSgG~krrl~iA~al~~~p~il 1623 (1833)
+|||+||+..+++.+||+||+.+..++++.+.. +++.++++.+++.+..++++.+||||||||++||+||+++|++|
T Consensus 73 ~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iL 149 (229)
T d3d31a2 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKIL 149 (229)
T ss_dssp TCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEE
T ss_pred CCEEECCCCCCCCCCCHHHHHHHHHHHCCCCHH---HHHHHHHHHHCCHHHHHCCHHHCCHHHHCCHHHHHHHHCCCCCE
T ss_conf 056151211117466577888887764055389---99999999825655575895547999840140304344367714
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 9938789989999999999999987416996999963778889977679999989999996596679751
Q 000224 1624 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693 (1833)
Q Consensus 1624 lLDEPt~GlDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~i~~~gs~~~l~~~ 1693 (1833)
+|||||+||||.+++.+|++|+++.++.| .|||++||+|+|+..+|||+++|.+|++++.|+++++.++
T Consensus 150 llDEPts~LD~~~~~~i~~~l~~l~~~~g-~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~ 218 (229)
T d3d31a2 150 LLDEPLSALDPRTQENAREMLSVLHKKNK-LTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (229)
T ss_dssp EEESSSTTSCHHHHHHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 43478767998999999999999986479-6899974999999996999999979999998699999868
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=416.43 Aligned_cols=216 Identities=26% Similarity=0.468 Sum_probs=201.5
Q ss_pred EEEEEEEEEEECCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCE
Q ss_conf 09999669994277884010132358884780999946999975799998809999995159996712782178860446
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 638 (1833)
Q Consensus 559 ~i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~di~~~~~~~r~~i 638 (1833)
.|+++||+|.|+ + .||+|+||++++||+++|+|||||||||++++|+|+.+|++|+|.++|.|+.. ....|+.+
T Consensus 1 mi~v~nlsk~y~----~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~-~~~~~r~i 74 (229)
T d3d31a2 1 MIEIESLSRKWK----N-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTD-LSPEKHDI 74 (229)
T ss_dssp CEEEEEEEEECS----S-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTT-SCHHHHTC
T ss_pred CEEEEEEEEEEC----C-EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC-CCHHHHCC
T ss_conf 989998999949----9-78843378987998999998999829999999964768887889995673465-21657405
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 99826898899999999999999960999788999999999983998300632378895689999999997189949998
Q 000224 639 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVIL 718 (1833)
Q Consensus 639 G~cpQ~~~L~~~LTv~EhL~~~~~lkg~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSGG~KrkLsiA~Alig~p~iliL 718 (1833)
||+||++.||+.+||+||+.+...+++.+.. +++.++++.+++.+..++++.+||||||||+++|+||+.+|++++|
T Consensus 75 g~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLll 151 (229)
T d3d31a2 75 AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLL 151 (229)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCHH---HHHHHHHHHHCCHHHHHCCHHHCCHHHHCCHHHHHHHHCCCCCEEE
T ss_conf 6151211117466577888887764055389---9999999982565557589554799984014030434436771443
Q ss_pred ECCCCCCCHHHHHHHHHHHHHH-H-CCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 2888999999999999999998-3-896999970797799853389999609879962697789865
Q 000224 719 DEPTSGMDPYSMRLTWQLIKKI-K-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 783 (1833)
Q Consensus 719 DEPTsGLDp~srr~iw~~l~~~-~-~grtiiltTH~mdEad~l~DrI~Il~~G~l~~~Gs~~~Lk~~ 783 (1833)
||||+||||.+++.+|++|+++ + .|.|||++||+|+||..+||||++|.+|+++++|++.++.++
T Consensus 152 DEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~ 218 (229)
T d3d31a2 152 DEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (229)
T ss_dssp ESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 4787679989999999999999864796899974999999996999999979999998699999868
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=420.44 Aligned_cols=224 Identities=24% Similarity=0.417 Sum_probs=210.1
Q ss_pred EEEEEEEEEEECCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCC----HHHH
Q ss_conf 099996699942778840101323588847809999469999757999988099999951599967127821----7886
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD----MDEI 634 (1833)
Q Consensus 559 ~i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~di~~~----~~~~ 634 (1833)
.|+++||+|.|+. |...||+|+||++++||+++|+|||||||||++++|+|+.+|++|+|+++|.++... ....
T Consensus 3 ~i~v~nlsk~y~~--g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (242)
T d1oxxk2 3 RIIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (242)
T ss_dssp CEEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEEEEEEEECC--CCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHH
T ss_conf 8999757999889--99899804078987998999998999809999999975868887459999999513731115312
Q ss_pred HCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 04469982689889999999999999996099978899999999998399830063237889568999999999718994
Q 000224 635 RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSK 714 (1833)
Q Consensus 635 r~~iG~cpQ~~~L~~~LTv~EhL~~~~~lkg~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSGG~KrkLsiA~Alig~p~ 714 (1833)
|+.+||+||++.||+.+||+||+.+..+..+.++.+.+++++++++.+||.+..++.+.+||||||||+++|+||+.+|+
T Consensus 81 rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~ 160 (242)
T d1oxxk2 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPS 160 (242)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred HCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHCCHHHCCHHHHHHHHHHHHHHHCCC
T ss_conf 04514773043346666577776655676137999999999999866591766648954599999858998757760466
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHH-C-CCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHHH
Q ss_conf 999828889999999999999999983-8-969999707977998533899996098799626977898650
Q 000224 715 VVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQY 784 (1833)
Q Consensus 715 iliLDEPTsGLDp~srr~iw~~l~~~~-~-grtiiltTH~mdEad~l~DrI~Il~~G~l~~~Gs~~~Lk~~~ 784 (1833)
+++|||||+||||.+++.+|++|++++ + |.|+|++||+|+||..+||||++|.+|++++.|++.++.+..
T Consensus 161 llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~P 232 (242)
T d1oxxk2 161 LLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNP 232 (242)
T ss_dssp EEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 145447866799899889989999998635987999979999999969999999899999986999998689
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=0 Score=412.99 Aligned_cols=223 Identities=28% Similarity=0.409 Sum_probs=187.8
Q ss_pred CCCEEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHHH
Q ss_conf 86519998689991898655654213333599758819999959999689999999199889950799968508999687
Q 000224 1461 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKA 1540 (1833)
Q Consensus 1461 ~~~~l~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~G~~~p~~G~i~i~G~~i~~~~~~ 1540 (1833)
.+.+|+++||+|.|+ ++.||+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 3 sd~~Lev~~l~k~yg------~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~ 76 (240)
T d1ji0a_ 3 SDIVLEVQSLHVYYG------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH 76 (240)
T ss_dssp CSEEEEEEEEEEEET------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHH
T ss_pred CCEEEEEEEEEEEEC------CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHH
T ss_conf 560799961899989------98888302578889979999999998599999999678888803898424434466088
Q ss_pred --HCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf --6044299805898798999999999999970999055999999999874-9962018898998946999999999990
Q 000224 1541 --ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEF-DLLKHAKKPSFTLSGGNKRKLSVAIAMI 1617 (1833)
Q Consensus 1541 --~~~~ig~~pQ~~~l~~~ltv~e~l~~~~~l~g~~~~~~~~~v~~~l~~~-~L~~~~~~~~~~lSgG~krrl~iA~al~ 1617 (1833)
.+..++|+||+..+++.+|++||+.+.+..+. .....++.+++.++.+ ++.+..++++++||||||||++||+||+
T Consensus 77 ~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~ 155 (240)
T d1ji0a_ 77 VINRMGIALVPEGRRIFPELTVYENLMMGAYNRK-DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALM 155 (240)
T ss_dssp HHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC-CSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHCHHHHHHCCHHHCCHHHHHHHHHHHHHH
T ss_conf 8887423556765545776369999998887327-888999999999987417688875854338999999999999998
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 699989993878998999999999999998741699699996377888997767999998999999659667975
Q 000224 1618 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1618 ~~p~illLDEPt~GlDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~i~~~gs~~~l~~ 1692 (1833)
++|++|+|||||+||||.+++.+|++|+++++ +| +||+++||+|++++.+|||+++|++|++++.|+++++.+
T Consensus 156 ~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~-~g-~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~ 228 (240)
T d1ji0a_ 156 SRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EG-TTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TT-CCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred HCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CC-CEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHC
T ss_conf 29987400398867999999999999999996-89-989999588999999699999998999999848999842
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=0 Score=409.45 Aligned_cols=220 Identities=29% Similarity=0.467 Sum_probs=199.3
Q ss_pred CEEEEEEEEEEECCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCH--HHHH
Q ss_conf 30999966999427788401013235888478099994699997579999880999999515999671278217--8860
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADM--DEIR 635 (1833)
Q Consensus 558 ~~i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~di~~~~--~~~r 635 (1833)
..++++||+|.| |++.||+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.|+.... ...|
T Consensus 5 ~~Lev~~l~k~y----g~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r 80 (240)
T d1ji0a_ 5 IVLEVQSLHVYY----GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80 (240)
T ss_dssp EEEEEEEEEEEE----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred EEEEEEEEEEEE----CCEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHH
T ss_conf 079996189998----9988883025788899799999999985999999996788888038984244344660888887
Q ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 44699826898899999999999999960999788999999999983-99830063237889568999999999718994
Q 000224 636 KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEV-GLADKVNIVVRALSGGMKRKLSLGIALIGDSK 714 (1833)
Q Consensus 636 ~~iG~cpQ~~~L~~~LTv~EhL~~~~~lkg~~~~~~~~~v~~~l~~l-~L~~~~~~~~~~LSGG~KrkLsiA~Alig~p~ 714 (1833)
..+|++||+..+|+.|||+||+.+.+..+. .....++++++.++.+ +|.+..++.+++||||||||+++|+||+.+|+
T Consensus 81 ~gi~~~~q~~~l~~~ltv~en~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~ 159 (240)
T d1ji0a_ 81 MGIALVPEGRRIFPELTVYENLMMGAYNRK-DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPK 159 (240)
T ss_dssp TTEEEECSSCCCCTTSBHHHHHHGGGTTCC-CSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCS
T ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHCHHHHHHCCHHHCCHHHHHHHHHHHHHHHCCC
T ss_conf 423556765545776369999998887327-8889999999999874176888758543389999999999999982998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 999828889999999999999999983-89699997079779985338999960987996269778986
Q 000224 715 VVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782 (1833)
Q Consensus 715 iliLDEPTsGLDp~srr~iw~~l~~~~-~grtiiltTH~mdEad~l~DrI~Il~~G~l~~~Gs~~~Lk~ 782 (1833)
+++|||||+||||.+++++|++|++++ +|+|||++||+|+|+..+||||++|++|++++.|++.++.+
T Consensus 160 lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~ 228 (240)
T d1ji0a_ 160 LLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHC
T ss_conf 740039886799999999999999999689989999588999999699999998999999848999842
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=401.78 Aligned_cols=222 Identities=22% Similarity=0.390 Sum_probs=183.7
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCC------
Q ss_conf 19998689991898655654213333599758819999959999689999999199889950799968508999------
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD------ 1537 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~G~~~p~~G~i~i~G~~i~~~------ 1537 (1833)
.|+++||+|.|+ ++.||+||||+|++||++||+|||||||||++++|+|+++|++|+|.++|.++...
T Consensus 2 ~Lev~nl~k~yg------~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~ 75 (258)
T d1b0ua_ 2 KLHVIDLHKRYG------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQ 75 (258)
T ss_dssp CEEEEEEEEEET------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSS
T ss_pred EEEEEEEEEEEC------CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHH
T ss_conf 699997899989------99988150668869979999989998299999999747667899779999993367752000
Q ss_pred --------HHHHCCCEEEEECCCCCCCCCCHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCHHHH
Q ss_conf --------687604429980589879899999999999-99709990559999999998749962-01889899894699
Q 000224 1538 --------PKAARRLIGYCPQFDALLEYLTVQEHLELY-ARIKGVAEYRMDDVVMEKLVEFDLLK-HAKKPSFTLSGGNK 1607 (1833)
Q Consensus 1538 --------~~~~~~~ig~~pQ~~~l~~~ltv~e~l~~~-~~l~g~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~lSgG~k 1607 (1833)
....+++|||+||++.+++.+|+.|++.+. ...++.+..+..+++.++++.++|.+ ..++.+.+||||||
T Consensus 76 ~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~ 155 (258)
T d1b0ua_ 76 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQ 155 (258)
T ss_dssp EEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHH
T ss_pred CCCCCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHH
T ss_conf 02351767999745448998332314110102136565787629998999999999999829952443068220567788
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECCH
Q ss_conf 99999999906999899938789989999999999999987416996999963778889977679999989999996596
Q 000224 1608 RKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1687 (1833)
Q Consensus 1608 rrl~iA~al~~~p~illLDEPt~GlDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~i~~~gs~ 1687 (1833)
||++||+||+.+|++|+|||||+||||.+++.++++|+++++ +| +|||++||+|+++..+||||++|.+|++++.|++
T Consensus 156 QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~g-~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~ 233 (258)
T d1b0ua_ 156 QRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EG-KTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDP 233 (258)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TT-CCEEEECSCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-CC-CCEEEEECCHHHHHHHCCEEEEEECCEEEEECCH
T ss_conf 898999998439987885245556887888899876554103-68-8338994899999986999999979999998499
Q ss_pred HHHHHH
Q ss_conf 679751
Q 000224 1688 QHLKTR 1693 (1833)
Q Consensus 1688 ~~l~~~ 1693 (1833)
+++.++
T Consensus 234 ~ev~~~ 239 (258)
T d1b0ua_ 234 EQVFGN 239 (258)
T ss_dssp HHHHHS
T ss_pred HHHHHC
T ss_conf 999838
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=401.17 Aligned_cols=222 Identities=23% Similarity=0.385 Sum_probs=204.7
Q ss_pred EEEEEEEEEEECCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCC---------
Q ss_conf 09999669994277884010132358884780999946999975799998809999995159996712782---------
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA--------- 629 (1833)
Q Consensus 559 ~i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~di~~--------- 629 (1833)
.++++||+|.| |...||+|+||++++||+++|+|||||||||++++|+|+.+|++|+|.++|.++..
T Consensus 2 ~Lev~nl~k~y----g~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~ 77 (258)
T d1b0ua_ 2 KLHVIDLHKRY----GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 77 (258)
T ss_dssp CEEEEEEEEEE----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEE
T ss_pred EEEEEEEEEEE----CCEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCC
T ss_conf 69999789998----99998815066886997999998999829999999974766789977999999336775200002
Q ss_pred -----CHHHHHCCEEEECCCCCCCCCCCHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCHHHHHH
Q ss_conf -----1788604469982689889999999999999-996099978899999999998399830-063237889568999
Q 000224 630 -----DMDEIRKGLGVCPQYDILFPELTVREHLEMF-AVLKGVKEELLESVVAEMVDEVGLADK-VNIVVRALSGGMKRK 702 (1833)
Q Consensus 630 -----~~~~~r~~iG~cpQ~~~L~~~LTv~EhL~~~-~~lkg~~~~~~~~~v~~~l~~l~L~~~-~~~~~~~LSGG~Krk 702 (1833)
.....|+.+|++||++.+++.+||.|++.+. ...++.+..+.++++.++++.++|.+. .++.+.+||||||||
T Consensus 78 ~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QR 157 (258)
T d1b0ua_ 78 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQR 157 (258)
T ss_dssp ESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHH
T ss_pred CCCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHH
T ss_conf 35176799974544899833231411010213656578762999899999999999982995244306822056778889
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
Q ss_conf 999999718994999828889999999999999999983-8969999707977998533899996098799626977898
Q 000224 703 LSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 703 LsiA~Alig~p~iliLDEPTsGLDp~srr~iw~~l~~~~-~grtiiltTH~mdEad~l~DrI~Il~~G~l~~~Gs~~~Lk 781 (1833)
+++|+||+.+|++++|||||+||||.+++.+|++|++++ +|+|||++||+|++|..+||||++|.+|++++.|++.++.
T Consensus 158 v~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~~ev~ 237 (258)
T d1b0ua_ 158 VSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 237 (258)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 89999984399878852455568878888998765541036883389948999999869999999799999984999998
Q ss_pred HHH
Q ss_conf 650
Q 000224 782 HQY 784 (1833)
Q Consensus 782 ~~~ 784 (1833)
...
T Consensus 238 ~~P 240 (258)
T d1b0ua_ 238 GNP 240 (258)
T ss_dssp HSC
T ss_pred HCC
T ss_conf 389
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=399.89 Aligned_cols=218 Identities=27% Similarity=0.449 Sum_probs=106.2
Q ss_pred EEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCC-CHHH---
Q ss_conf 999868999189865565421333359975881999995999968999999919988995079996850899-9687---
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKA--- 1540 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~--- 1540 (1833)
|+++||+|.|+.+. ....||+|+||+|++||++||+|||||||||+++||+|+.+|++|+|+++|.++.. +..+
T Consensus 2 I~i~nlsk~y~~~~--~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~ 79 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGE--EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79 (230)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred EEEEEEEEEECCCC--EEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCH
T ss_conf 89990799948998--2089871337788499799998899998216557506887777662699999857688555123
Q ss_pred H-CCCEEEEECCCCCCCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 6-044299805898798999999999999970---9990559999999998749962-0188989989469999999999
Q 000224 1541 A-RRLIGYCPQFDALLEYLTVQEHLELYARIK---GVAEYRMDDVVMEKLVEFDLLK-HAKKPSFTLSGGNKRKLSVAIA 1615 (1833)
Q Consensus 1541 ~-~~~ig~~pQ~~~l~~~ltv~e~l~~~~~l~---g~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~lSgG~krrl~iA~a 1615 (1833)
. +++|||+||++.+++.+||+||+.+...++ +.+..+..+++.++++.++|.+ .+++++.+||||||||++||+|
T Consensus 80 ~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAra 159 (230)
T d1l2ta_ 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARA 159 (230)
T ss_dssp HHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred HHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCHHHCCHHHHHHHHHHHH
T ss_conf 12555778804124176866888775788872247899999999999988762423455348802389999999998756
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECC
Q ss_conf 90699989993878998999999999999998741699699996377888997767999998999999659
Q 000224 1616 MIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS 1686 (1833)
Q Consensus 1616 l~~~p~illLDEPt~GlDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~i~~~gs 1686 (1833)
|+.+|++|+|||||+||||.+++.+|++|++++++.| +|||++||+|+++ ++|||+++|.+|+++++|+
T Consensus 160 L~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g-~tii~vTHd~~~a-~~~drv~~m~~G~Iv~~g~ 228 (230)
T d1l2ta_ 160 LANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDG-KTVVVVTHDINVA-RFGERIIYLKDGEVEREEK 228 (230)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTC-CEEEEECSCHHHH-TTSSEEEEEETTEEEEEEE
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHC-CEEEEECCCHHHH-HHCCEEEEEECCEEEEECC
T ss_conf 5227888994687654698999999999999998439-9999987888999-8699899998999999525
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=405.32 Aligned_cols=222 Identities=22% Similarity=0.312 Sum_probs=183.8
Q ss_pred CEEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCC-CHHH-
Q ss_conf 51999868999189865565421333359975881999995999968999999919988995079996850899-9687-
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKA- 1540 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~- 1540 (1833)
.+|+++||+|.|+ ++.||+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ++.+
T Consensus 3 ~iL~v~nlsk~yg------~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~ 76 (254)
T d1g6ha_ 3 EILRTENIVKYFG------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 76 (254)
T ss_dssp EEEEEEEEEEEET------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHH
T ss_pred CEEEEEEEEEEEC------CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHH
T ss_conf 6699977899979------9688712179988997999999999849999999977976887379999996640569999
Q ss_pred HCCCEEEEECCCCCCCCCCHHHHHHHHHHH-------------CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf 604429980589879899999999999997-------------0999055999999999874996201889899894699
Q 000224 1541 ARRLIGYCPQFDALLEYLTVQEHLELYARI-------------KGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNK 1607 (1833)
Q Consensus 1541 ~~~~ig~~pQ~~~l~~~ltv~e~l~~~~~l-------------~g~~~~~~~~~v~~~l~~~~L~~~~~~~~~~lSgG~k 1607 (1833)
.+..|||+||++.+++.+|+.||+.+.... ....+++..+++.++++.+++.+.+++++++||||||
T Consensus 77 ~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 156 (254)
T d1g6ha_ 77 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQM 156 (254)
T ss_dssp HHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHH
T ss_pred HHHCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCCHHHCCCHHH
T ss_conf 98338725776424788742321430133303450456654213532899999999998761963020595356991888
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECCH
Q ss_conf 99999999906999899938789989999999999999987416996999963778889977679999989999996596
Q 000224 1608 RKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1687 (1833)
Q Consensus 1608 rrl~iA~al~~~p~illLDEPt~GlDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~i~~~gs~ 1687 (1833)
||+++|+||+.+|++|+|||||+||||.+++.+|+.|++++ ++| +||+++||+|+|+..+||||++|++|++++.|++
T Consensus 157 Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~-~~g-~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~ 234 (254)
T d1g6ha_ 157 KLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK-AKG-ITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 234 (254)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH-HTT-CEEEEECSCCSTTGGGCSEEEEEETTEEEEEEES
T ss_pred HHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHH-HCC-CEEEEEECCHHHHHHHCCEEEEEECCEEEEEECH
T ss_conf 89999999975927232439765699999999999999999-789-9899994769999986999999969989999668
Q ss_pred HHHHH
Q ss_conf 67975
Q 000224 1688 QHLKT 1692 (1833)
Q Consensus 1688 ~~l~~ 1692 (1833)
+++.+
T Consensus 235 ~e~~~ 239 (254)
T d1g6ha_ 235 EEEIK 239 (254)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99865
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=399.04 Aligned_cols=218 Identities=25% Similarity=0.437 Sum_probs=197.7
Q ss_pred EEEEEEEEEEECCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCC-C---HHHH
Q ss_conf 09999669994277884010132358884780999946999975799998809999995159996712782-1---7886
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-D---MDEI 634 (1833)
Q Consensus 559 ~i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~di~~-~---~~~~ 634 (1833)
.|+++||+|.|+.+.+...||+|+||++++||+++++||||||||||+++|+|+.+|++|+|+++|.++.. + ....
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHH
T ss_conf 98999079994899820898713377884997999988999982165575068877776626999998576885551231
Q ss_pred -HCCEEEECCCCCCCCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCHHHHHHHHHHHHH
Q ss_conf -044699826898899999999999999960---99978899999999998399830-0632378895689999999997
Q 000224 635 -RKGLGVCPQYDILFPELTVREHLEMFAVLK---GVKEELLESVVAEMVDEVGLADK-VNIVVRALSGGMKRKLSLGIAL 709 (1833)
Q Consensus 635 -r~~iG~cpQ~~~L~~~LTv~EhL~~~~~lk---g~~~~~~~~~v~~~l~~l~L~~~-~~~~~~~LSGG~KrkLsiA~Al 709 (1833)
|+.|||+||++.|++.+||+||+.+...++ +.+..+..+++.++++.++|.++ .++.+.+||||||||++||+||
T Consensus 81 r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL 160 (230)
T d1l2ta_ 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL 160 (230)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred HCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCHHHCCHHHHHHHHHHHHH
T ss_conf 25557788041241768668887757888722478999999999999887624234553488023899999999987565
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-HC-CCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCH
Q ss_conf 1899499982888999999999999999998-38-96999970797799853389999609879962697
Q 000224 710 IGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-KK-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSS 777 (1833)
Q Consensus 710 ig~p~iliLDEPTsGLDp~srr~iw~~l~~~-~~-grtiiltTH~mdEad~l~DrI~Il~~G~l~~~Gs~ 777 (1833)
+.+|++++|||||+||||.+|+.+|++|+++ ++ |.|+|++||+|++| .+||||++|.+|++++.|+.
T Consensus 161 ~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a-~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 161 ANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEEC
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHH-HHCCEEEEEECCEEEEECCC
T ss_conf 2278889946876546989999999999999984399999987888999-86998999989999995257
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=400.73 Aligned_cols=221 Identities=23% Similarity=0.352 Sum_probs=199.4
Q ss_pred CEEEEEEEEEEECCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCC-CH-HHHH
Q ss_conf 309999669994277884010132358884780999946999975799998809999995159996712782-17-8860
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DM-DEIR 635 (1833)
Q Consensus 558 ~~i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~di~~-~~-~~~r 635 (1833)
..++++||+|.| |...||+|+||++++|||++|+||||||||||+++|+|+++|++|+|.++|.++.. .. +..+
T Consensus 3 ~iL~v~nlsk~y----g~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 78 (254)
T d1g6ha_ 3 EILRTENIVKYF----GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 78 (254)
T ss_dssp EEEEEEEEEEEE----TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred CEEEEEEEEEEE----CCEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHH
T ss_conf 669997789997----9968871217998899799999999984999999997797688737999999664056999998
Q ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHC-------------CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 44699826898899999999999999960-------------99978899999999998399830063237889568999
Q 000224 636 KGLGVCPQYDILFPELTVREHLEMFAVLK-------------GVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRK 702 (1833)
Q Consensus 636 ~~iG~cpQ~~~L~~~LTv~EhL~~~~~lk-------------g~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSGG~Krk 702 (1833)
..+|++||.+.+++++||.||+.+....+ ....++..+++.++++.+++.+..++++++||||||||
T Consensus 79 ~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qr 158 (254)
T d1g6ha_ 79 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKL 158 (254)
T ss_dssp HTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHH
T ss_pred HCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCCHHHCCCHHHHH
T ss_conf 33872577642478874232143013330345045665421353289999999999876196302059535699188889
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
Q ss_conf 999999718994999828889999999999999999983-8969999707977998533899996098799626977898
Q 000224 703 LSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 781 (1833)
Q Consensus 703 LsiA~Alig~p~iliLDEPTsGLDp~srr~iw~~l~~~~-~grtiiltTH~mdEad~l~DrI~Il~~G~l~~~Gs~~~Lk 781 (1833)
+++|+||+.+|++++|||||+||||.+++.+|++|++++ +|+|||++||+|+|+..+||||++|.+|++++.|++.++.
T Consensus 159 v~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e~~ 238 (254)
T d1g6ha_ 159 VEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEI 238 (254)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHHHH
T ss_pred HHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHH
T ss_conf 99999997592723243976569999999999999999978998999947699999869999999699899996689986
Q ss_pred H
Q ss_conf 6
Q 000224 782 H 782 (1833)
Q Consensus 782 ~ 782 (1833)
+
T Consensus 239 ~ 239 (254)
T d1g6ha_ 239 K 239 (254)
T ss_dssp H
T ss_pred H
T ss_conf 5
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=392.26 Aligned_cols=216 Identities=25% Similarity=0.396 Sum_probs=184.6
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHCC
Q ss_conf 19998689991898655654213333599758819999959999689999999199889950799968508999687604
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1543 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~ 1543 (1833)
.|++ ++.|+|+ ++. + |+||++. +|++||+|||||||||++++|+|+++|++|+|.++|.++.... ..++
T Consensus 2 ~l~v-~~~k~~g------~~~-~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~-~~~r 70 (240)
T d2onka1 2 FLKV-RAEKRLG------NFR-L-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP-PERR 70 (240)
T ss_dssp CEEE-EEEEEET------TEE-E-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-TTTS
T ss_pred EEEE-EEEEEEC------CEE-E-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCC-HHHC
T ss_conf 7999-9999989------999-9-9999749-9799999799980999999997399989628999999988699-8992
Q ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 42998058987989999999999999709990559999999998749962018898998946999999999990699989
Q 000224 1544 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1623 (1833)
Q Consensus 1544 ~ig~~pQ~~~l~~~ltv~e~l~~~~~l~g~~~~~~~~~v~~~l~~~~L~~~~~~~~~~lSgG~krrl~iA~al~~~p~il 1623 (1833)
+|||+||++++++.+||+||+.+. +++.++.+.++++.++++.++|.+..++++.+||||||||++||+||+++|++|
T Consensus 71 ~ig~v~Q~~~l~~~ltV~enl~~~--l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~il 148 (240)
T d2onka1 71 GIGFVPQDYALFPHLSVYRNIAYG--LRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLL 148 (240)
T ss_dssp CCBCCCSSCCCCTTSCHHHHHHTT--CTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSB
T ss_pred CCEEECCCHHHCCCCHHHHHHHHH--HCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCCE
T ss_conf 852252314435220155766653--233677889999999998638375665794448999989999987775167706
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 9938789989999999999999987416996999963778889977679999989999996596679751
Q 000224 1624 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693 (1833)
Q Consensus 1624 lLDEPt~GlDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~i~~~gs~~~l~~~ 1693 (1833)
+|||||+||||.+++.+|+.|++++++.| +|||++||+|+|+..+|||+++|++|++++.|+++++.+.
T Consensus 149 llDEPts~LD~~~~~~i~~~i~~l~~~~g-~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~ 217 (240)
T d2onka1 149 LLDEPLSAVDLKTKGVLMEELRFVQREFD-VPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp EEESTTSSCCHHHHHHHHHHHHHHHHHHT-CCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCC
T ss_conf 75286555887999999999999987439-7699981899999996999999989999999069998329
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=390.32 Aligned_cols=213 Identities=29% Similarity=0.450 Sum_probs=194.0
Q ss_pred EEEEEEEEEECCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCEE
Q ss_conf 99996699942778840101323588847809999469999757999988099999951599967127821788604469
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 639 (1833)
Q Consensus 560 i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~di~~~~~~~r~~iG 639 (1833)
+++ ++.|.| |... + |+||++. +|+++|+|||||||||++++|+|+++|++|+|.++|.|+..- ...|+.||
T Consensus 3 l~v-~~~k~~----g~~~-~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~-~~~~r~ig 73 (240)
T d2onka1 3 LKV-RAEKRL----GNFR-L-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL-PPERRGIG 73 (240)
T ss_dssp EEE-EEEEEE----TTEE-E-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS-CTTTSCCB
T ss_pred EEE-EEEEEE----CCEE-E-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCC-CHHHCCCE
T ss_conf 999-999998----9999-9-9999749-979999979998099999999739998962899999998869-98992852
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 98268988999999999999999609997889999999999839983006323788956899999999971899499982
Q 000224 640 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 719 (1833)
Q Consensus 640 ~cpQ~~~L~~~LTv~EhL~~~~~lkg~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSGG~KrkLsiA~Alig~p~iliLD 719 (1833)
|+||++.||+.+||+||+.|. +++.++.+.+++++++++.+||.+..++.+.+||||||||+++|+||+.+|++++||
T Consensus 74 ~v~Q~~~l~~~ltV~enl~~~--l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlD 151 (240)
T d2onka1 74 FVPQDYALFPHLSVYRNIAYG--LRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLD 151 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTT--CTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEE
T ss_pred EECCCHHHCCCCHHHHHHHHH--HCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCCEEEC
T ss_conf 252314435220155766653--233677889999999998638375665794448999989999987775167706752
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH--CCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 8889999999999999999983--896999970797799853389999609879962697789865
Q 000224 720 EPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 783 (1833)
Q Consensus 720 EPTsGLDp~srr~iw~~l~~~~--~grtiiltTH~mdEad~l~DrI~Il~~G~l~~~Gs~~~Lk~~ 783 (1833)
|||+||||.+|+.+|++|+++. .|.|+|++||+|+||..+||||++|++|+++++|++.++.+.
T Consensus 152 EPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~ 217 (240)
T d2onka1 152 EPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp STTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCC
T ss_conf 865558879999999999999874397699981899999996999999989999999069998329
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=366.51 Aligned_cols=223 Identities=26% Similarity=0.389 Sum_probs=155.2
Q ss_pred EEEEEEEEEEECCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCC-CHHHHHCC
Q ss_conf 09999669994277884010132358884780999946999975799998809999995159996712782-17886044
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 637 (1833)
Q Consensus 559 ~i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~di~~-~~~~~r~~ 637 (1833)
.|+++|+++.|+.++ ++.+|+|+||++++||+++++|+|||||||++++|+|+++|++|+|+++|.|+.. +....|+.
T Consensus 11 ~I~~~nvsf~Y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 89 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNRP-DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQ 89 (251)
T ss_dssp CEEEEEEEECCTTST-TCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred EEEEEEEEEECCCCC-CCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHHHHH
T ss_conf 699999899889999-9976744389984998999999999849999999861437876899889985311013788877
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHC--CCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 699826898899999999999999960999788999-----999999983--9983006323788956899999999971
Q 000224 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLES-----VVAEMVDEV--GLADKVNIVVRALSGGMKRKLSLGIALI 710 (1833)
Q Consensus 638 iG~cpQ~~~L~~~LTv~EhL~~~~~lkg~~~~~~~~-----~v~~~l~~l--~L~~~~~~~~~~LSGG~KrkLsiA~Ali 710 (1833)
+||+||++.+|+. |++|++.+....+. ...+..+ ...+.++.+ ++....+.....||||||||+++|+||+
T Consensus 90 i~~v~Q~~~lf~~-tv~eni~~g~~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~ 167 (251)
T d1jj7a_ 90 VAAVGQEPQVFGR-SLQENIAYGLTQKP-TMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALI 167 (251)
T ss_dssp EEEECSSCCCCSS-BHHHHHHCSCSSCC-CHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCCCCC-CHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECCC
T ss_conf 6540456500276-34655454210130-278899999999899999856121113675167668954704899860445
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--CCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHHHC
Q ss_conf 8994999828889999999999999999983--89699997079779985338999960987996269778986509
Q 000224 711 GDSKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 785 (1833)
Q Consensus 711 g~p~iliLDEPTsGLDp~srr~iw~~l~~~~--~grtiiltTH~mdEad~l~DrI~Il~~G~l~~~Gs~~~Lk~~~g 785 (1833)
.+|+|++||||||+||+.+++.++++|.++. .++|+|++||+++.+.. ||||++|++|++++.|++.+|.++-|
T Consensus 168 ~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~-aDrI~vl~~G~iv~~Gt~~eLl~~~~ 243 (251)
T d1jj7a_ 168 RKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQ-ADHILFLEGGAIREGGTHQQLMEKKG 243 (251)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHT-CSEEEEEETTEEEEEECHHHHHHHTS
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 68707871675765685368999999999765069899999597999985-99999998999999889999985975
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=362.87 Aligned_cols=218 Identities=24% Similarity=0.453 Sum_probs=146.0
Q ss_pred EEEEEEEEEECCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCC-CHHHHHCCE
Q ss_conf 9999669994277884010132358884780999946999975799998809999995159996712782-178860446
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGL 638 (1833)
Q Consensus 560 i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~di~~-~~~~~r~~i 638 (1833)
|+++|+++.|+.. ...+++|+||++++||+++++|+|||||||++++|+|+++|++|+|.++|.|+.. +..+.|+.+
T Consensus 2 I~~~nvsf~Y~~~--~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 2 ITFRNIRFRYKPD--SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEESSTT--SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred EEEEEEEEEECCC--CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEE
T ss_conf 2999999990899--96037424899849999999999999899999999735788888999999994400246553528
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH-----HHHHHC--CCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 99826898899999999999999960999788999999-----999983--99830063237889568999999999718
Q 000224 639 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVA-----EMVDEV--GLADKVNIVVRALSGGMKRKLSLGIALIG 711 (1833)
Q Consensus 639 G~cpQ~~~L~~~LTv~EhL~~~~~lkg~~~~~~~~~v~-----~~l~~l--~L~~~~~~~~~~LSGG~KrkLsiA~Alig 711 (1833)
||+||++.+|+. |++||+.+... ..+.+++....+ +.++.+ ++....+.....||||||||+++|+||+.
T Consensus 80 ~~v~Q~~~lf~~-Ti~eNi~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~ 156 (241)
T d2pmka1 80 GVVLQDNVLLNR-SIIDNISLANP--GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 156 (241)
T ss_dssp EEECSSCCCTTS-BHHHHHCTTST--TCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCC-CCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 898244655784-00035223575--543888999999975578887632013443278788669889898754434441
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 994999828889999999999999999983896999970797799853389999609879962697789865
Q 000224 712 DSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 783 (1833)
Q Consensus 712 ~p~iliLDEPTsGLDp~srr~iw~~l~~~~~grtiiltTH~mdEad~l~DrI~Il~~G~l~~~Gs~~~Lk~~ 783 (1833)
+|+|++||||||+||+.+++.+++.|+++.+++|+|++||+++.+. .||||++|++|++++.|++.+|.++
T Consensus 157 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~i~vl~~G~Iv~~G~~~ell~~ 227 (241)
T d2pmka1 157 NPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQGKHKELLSE 227 (241)
T ss_dssp CCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHH-HCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 6513556477655598999999999999858998999978899998-4999999989999998899999829
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=357.43 Aligned_cols=222 Identities=25% Similarity=0.410 Sum_probs=156.8
Q ss_pred EEEEEEEEEEECCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCC-CHHHHHCC
Q ss_conf 09999669994277884010132358884780999946999975799998809999995159996712782-17886044
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 637 (1833)
Q Consensus 559 ~i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~di~~-~~~~~r~~ 637 (1833)
.|+++|+++.|+.+ +..+|+|+||++++||+++++|+|||||||++++|+|+++|++|+|.++|.++.. +....|+.
T Consensus 13 ~I~~~nvsf~Y~~~--~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 90 (253)
T d3b60a1 13 DLEFRNVTFTYPGR--EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 90 (253)
T ss_dssp CEEEEEEEECSSSS--SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHT
T ss_pred EEEEEEEEEEECCC--CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHE
T ss_conf 79999889992999--9763533289985999999999999859999999862168884689878801211106654206
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH-----HHHHHHC--CCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 69982689889999999999999996099978899999-----9999983--9983006323788956899999999971
Q 000224 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVV-----AEMVDEV--GLADKVNIVVRALSGGMKRKLSLGIALI 710 (1833)
Q Consensus 638 iG~cpQ~~~L~~~LTv~EhL~~~~~lkg~~~~~~~~~v-----~~~l~~l--~L~~~~~~~~~~LSGG~KrkLsiA~Ali 710 (1833)
+||+||++.+|+. |+++++.+. .....+.+++.+.. .+.++.+ |+....+.....||||||||++||+||+
T Consensus 91 i~~v~Q~~~l~~~-ti~~n~~~~-~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~ 168 (253)
T d3b60a1 91 VALVSQNVHLFND-TVANNIAYA-RTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 168 (253)
T ss_dssp EEEECSSCCCCSS-BHHHHHHTT-TTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCC-CHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 8799502544786-202433205-72208999999999998179999735544101434888984999999999999995
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHHHC
Q ss_conf 899499982888999999999999999998389699997079779985338999960987996269778986509
Q 000224 711 GDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 785 (1833)
Q Consensus 711 g~p~iliLDEPTsGLDp~srr~iw~~l~~~~~grtiiltTH~mdEad~l~DrI~Il~~G~l~~~Gs~~~Lk~~~g 785 (1833)
.+|++++||||||+||+.+++.+++.|+++++++|+|++||+++.+. .||||++|++|+++..|++.+|.++.+
T Consensus 169 ~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~v~vl~~G~Iv~~G~~~eLl~~~~ 242 (253)
T d3b60a1 169 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELLAQHG 242 (253)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEEEECHHHHHHHTS
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH-HCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 49988995164445898899999999987522788999988799998-599999998999999889999986893
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=360.54 Aligned_cols=225 Identities=21% Similarity=0.354 Sum_probs=188.7
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCC-CHHHHC
Q ss_conf 1999868999189865565421333359975881999995999968999999919988995079996850899-968760
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAAR 1542 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~ 1542 (1833)
.|+++|+++.|++. .++.+++|+||+|++||++||+|||||||||++++|+|+++|++|+|.++|.++.. +....|
T Consensus 11 ~I~~~nvsf~Y~~~---~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r 87 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNR---PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLH 87 (251)
T ss_dssp CEEEEEEEECCTTS---TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHH
T ss_pred EEEEEEEEEECCCC---CCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHHH
T ss_conf 69999989988999---999767443899849989999999998499999998614378768998899853110137888
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHC--CCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 44299805898798999999999999970999055999-----999999874--99620188989989469999999999
Q 000224 1543 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDD-----VVMEKLVEF--DLLKHAKKPSFTLSGGNKRKLSVAIA 1615 (1833)
Q Consensus 1543 ~~ig~~pQ~~~l~~~ltv~e~l~~~~~l~g~~~~~~~~-----~v~~~l~~~--~L~~~~~~~~~~lSgG~krrl~iA~a 1615 (1833)
+++||+||++.+++ .|++||+.+..... .......+ ...+.++.+ ++....++....||||||||++||||
T Consensus 88 ~~i~~v~Q~~~lf~-~tv~eni~~g~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARa 165 (251)
T d1jj7a_ 88 RQVAAVGQEPQVFG-RSLQENIAYGLTQK-PTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARA 165 (251)
T ss_dssp HHEEEECSSCCCCS-SBHHHHHHCSCSSC-CCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCC-CCHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEEC
T ss_conf 77654045650027-63465545421013-02788999999998999998561211136751676689547048998604
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHHCC
Q ss_conf 90699989993878998999999999999998741699699996377888997767999998999999659667975118
Q 000224 1616 MIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 1695 (1833)
Q Consensus 1616 l~~~p~illLDEPt~GlDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~i~~~gs~~~l~~~~~ 1695 (1833)
|+.+|+|++|||||++||+.+++.+++.|.++.++.+ +|+|++||+++.++ .||||++|++|++++.|++++|.++-+
T Consensus 166 l~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~-~Tvi~itH~l~~~~-~aDrI~vl~~G~iv~~Gt~~eLl~~~~ 243 (251)
T d1jj7a_ 166 LIRKPCVLILDDATSALDANSQLQVEQLLYESPERYS-RSVLLITQHLSLVE-QADHILFLEGGAIREGGTHQQLMEKKG 243 (251)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGG-CEEEEECSCHHHHH-TCSEEEEEETTEEEEEECHHHHHHHTS
T ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCC-CEEEEEECCHHHHH-HCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 4568707871675765685368999999999765069-89999959799998-599999998999999889999985975
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=368.31 Aligned_cols=214 Identities=24% Similarity=0.387 Sum_probs=121.3
Q ss_pred EEEEEEEEEECCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCC-CHHHHHCCE
Q ss_conf 9999669994277884010132358884780999946999975799998809999995159996712782-178860446
Q 000224 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGL 638 (1833)
Q Consensus 560 i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~di~~-~~~~~r~~i 638 (1833)
|+++|+++.|+. .+.+++|+||++++||+++++|||||||||++++|+|+++|++|+|.++|.++.. +....|+.+
T Consensus 2 le~knvsf~Y~~---~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 78 (242)
T d1mv5a_ 2 LSARHVDFAYDD---SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQI 78 (242)
T ss_dssp EEEEEEEECSSS---SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTC
T ss_pred EEEEEEEEECCC---CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHE
T ss_conf 799988998799---98414225899859999999999999799999999996098987798899884424678887436
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC-------CCCC----CCCCCCCHHHHHHHHHHH
Q ss_conf 99826898899999999999999960999788999999999983998-------3006----323788956899999999
Q 000224 639 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA-------DKVN----IVVRALSGGMKRKLSLGI 707 (1833)
Q Consensus 639 G~cpQ~~~L~~~LTv~EhL~~~~~lkg~~~~~~~~~v~~~l~~l~L~-------~~~~----~~~~~LSGG~KrkLsiA~ 707 (1833)
||+||++.+|+. |++||+.+.... ..... ++.+.++..++. +..+ .....||||||||+++|+
T Consensus 79 ~~v~Q~~~lf~~-ti~eNi~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iAR 152 (242)
T d1mv5a_ 79 GFVSQDSAIMAG-TIRENLTYGLEG-DYTDE----DLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIAR 152 (242)
T ss_dssp CEECCSSCCCCE-EHHHHTTSCTTS-CSCHH----HHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHH
T ss_pred EEECCCCCCCCC-CHHHHEECCCCC-CCCHH----HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 797566545785-345430124455-54235----677899999755542037421015236878987999999999999
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 9718994999828889999999999999999983896999970797799853389999609879962697789865
Q 000224 708 ALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 783 (1833)
Q Consensus 708 Alig~p~iliLDEPTsGLDp~srr~iw~~l~~~~~grtiiltTH~mdEad~l~DrI~Il~~G~l~~~Gs~~~Lk~~ 783 (1833)
||+.+|+|++||||||+||+.+++.+++.|+++++++|+|++||+++.+.. ||||++|++|++++.|++.+|.++
T Consensus 153 al~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-~D~i~vl~~G~iv~~G~~~eLl~~ 227 (242)
T d1mv5a_ 153 AFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVD-ADKIYFIEKGQITGSGKHNELVAT 227 (242)
T ss_dssp HHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHH-CSEEEEEETTEECCCSCHHHHHHH
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHHC
T ss_conf 985299899965886556988999998878887179989999787999984-999999989999999999999868
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=355.97 Aligned_cols=217 Identities=26% Similarity=0.412 Sum_probs=179.7
Q ss_pred EEEEEEEEEEECCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCC-CHHHHHCC
Q ss_conf 09999669994277884010132358884780999946999975799998809999995159996712782-17886044
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 637 (1833)
Q Consensus 559 ~i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~di~~-~~~~~r~~ 637 (1833)
.|+++|+++.|+.. ...+++|+||++++||+++++|+|||||||++++|+|+++|++|+|.++|.|+.. +....|+.
T Consensus 16 ~I~~~nvsf~Y~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~ 93 (255)
T d2hyda1 16 RIDIDHVSFQYNDN--EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 93 (255)
T ss_dssp CEEEEEEEECSCSS--SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHT
T ss_pred EEEEEEEEEEECCC--CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHHHE
T ss_conf 79999889995999--9760644389983998999988999809999999971278630001539987530788886341
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC-----------CCCCCCCCCCHHHHHHHHHH
Q ss_conf 6998268988999999999999999609997889999999999839983-----------00632378895689999999
Q 000224 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLAD-----------KVNIVVRALSGGMKRKLSLG 706 (1833)
Q Consensus 638 iG~cpQ~~~L~~~LTv~EhL~~~~~lkg~~~~~~~~~v~~~l~~l~L~~-----------~~~~~~~~LSGG~KrkLsiA 706 (1833)
+|||||++.+|+. |++||+.++.. .... +++.+.++.+++.+ ........||||||||+++|
T Consensus 94 i~~v~Q~~~lf~~-Ti~eNi~~g~~--~~~~----~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iA 166 (255)
T d2hyda1 94 IGLVQQDNILFSD-TVKENILLGRP--TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIA 166 (255)
T ss_dssp EEEECSSCCCCSS-BHHHHHGGGCS--SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCCC-CHHHHHHCCCC--CCCH----HHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHH
T ss_conf 4565101568998-79999851586--7999----999999999697999973624201033388898499999999999
Q ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHHHC
Q ss_conf 9971899499982888999999999999999998389699997079779985338999960987996269778986509
Q 000224 707 IALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 785 (1833)
Q Consensus 707 ~Alig~p~iliLDEPTsGLDp~srr~iw~~l~~~~~grtiiltTH~mdEad~l~DrI~Il~~G~l~~~Gs~~~Lk~~~g 785 (1833)
+||+.+|++++||||||+||+.+++.+++.|.++++++|+|++||+++.+. .||||++|++|++++.|++.+|.++.+
T Consensus 167 Ral~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~-~~D~ii~l~~G~iv~~G~~~eLl~~~~ 244 (255)
T d2hyda1 167 RIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT-HADKIVVIENGHIVETGTHRELIAKQG 244 (255)
T ss_dssp HHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT-TCSEEEEEETTEEEEEECHHHHHHTTS
T ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHH-HCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 998559989998376544797799999999998753888999968999998-599999998999999889999986884
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=357.98 Aligned_cols=216 Identities=21% Similarity=0.360 Sum_probs=180.5
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCC-CHHHHC
Q ss_conf 1999868999189865565421333359975881999995999968999999919988995079996850899-968760
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAAR 1542 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~ 1542 (1833)
+|+++|+++.|++ .+.+++|+||++++||++|++|||||||||++++|+|+++|++|+|.++|.++.. +....|
T Consensus 1 mle~knvsf~Y~~-----~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r 75 (242)
T d1mv5a_ 1 MLSARHVDFAYDD-----SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWR 75 (242)
T ss_dssp CEEEEEEEECSSS-----SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCT
T ss_pred CEEEEEEEEECCC-----CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHH
T ss_conf 9799988998799-----98414225899859999999999999799999999996098987798899884424678887
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC-----------CCCCCCCCCCHHHHHHHH
Q ss_conf 442998058987989999999999999709990559999999998749962-----------018898998946999999
Q 000224 1543 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK-----------HAKKPSFTLSGGNKRKLS 1611 (1833)
Q Consensus 1543 ~~ig~~pQ~~~l~~~ltv~e~l~~~~~l~g~~~~~~~~~v~~~l~~~~L~~-----------~~~~~~~~lSgG~krrl~ 1611 (1833)
++|||+||++.+++. |++||+.+... ...... .+.+.++..++.+ ........||||||||++
T Consensus 76 ~~i~~v~Q~~~lf~~-ti~eNi~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~ 149 (242)
T d1mv5a_ 76 SQIGFVSQDSAIMAG-TIRENLTYGLE-GDYTDE----DLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLA 149 (242)
T ss_dssp TTCCEECCSSCCCCE-EHHHHTTSCTT-SCSCHH----HHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHH
T ss_pred HHEEEECCCCCCCCC-CHHHHEECCCC-CCCCHH----HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 436797566545785-34543012445-554235----677899999755542037421015236878987999999999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
Q ss_conf 99999069998999387899899999999999999874169969999637788899776799999899999965966797
Q 000224 1612 VAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1691 (1833)
Q Consensus 1612 iA~al~~~p~illLDEPt~GlDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~i~~~gs~~~l~ 1691 (1833)
+||||+.+|+|++|||||++||+.+++.+++.|+++. ++ +|||++||+++.+.. ||||++|++|++++.|++++|.
T Consensus 150 iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~-~Tvi~itH~l~~~~~-~D~i~vl~~G~iv~~G~~~eLl 225 (242)
T d1mv5a_ 150 IARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KG-RTTLVIAHRLSTIVD-ADKIYFIEKGQITGSGKHNELV 225 (242)
T ss_dssp HHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TT-SEEEEECCSHHHHHH-CSEEEEEETTEECCCSCHHHHH
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC--CC-CEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHH
T ss_conf 9999852998999658865569889999988788871--79-989999787999984-9999999899999999999998
Q ss_pred HHC
Q ss_conf 511
Q 000224 1692 TRF 1694 (1833)
Q Consensus 1692 ~~~ 1694 (1833)
++.
T Consensus 226 ~~~ 228 (242)
T d1mv5a_ 226 ATH 228 (242)
T ss_dssp HHC
T ss_pred HCC
T ss_conf 689
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=345.05 Aligned_cols=223 Identities=22% Similarity=0.392 Sum_probs=187.8
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCC-CHHHHC
Q ss_conf 1999868999189865565421333359975881999995999968999999919988995079996850899-968760
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAAR 1542 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~ 1542 (1833)
-|+++|+++.|+++ ...+++|+||.|++||++||+|||||||||++++|+|+++|++|+|.++|.++.. +....+
T Consensus 13 ~I~~~nvsf~Y~~~----~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r 88 (253)
T d3b60a1 13 DLEFRNVTFTYPGR----EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR 88 (253)
T ss_dssp CEEEEEEEECSSSS----SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHH
T ss_pred EEEEEEEEEEECCC----CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHH
T ss_conf 79999889992999----97635332899859999999999998599999998621688846898788012111066542
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH-----HHHHHHC--CCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 4429980589879899999999999997099905599999-----9999874--99620188989989469999999999
Q 000224 1543 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV-----MEKLVEF--DLLKHAKKPSFTLSGGNKRKLSVAIA 1615 (1833)
Q Consensus 1543 ~~ig~~pQ~~~l~~~ltv~e~l~~~~~l~g~~~~~~~~~v-----~~~l~~~--~L~~~~~~~~~~lSgG~krrl~iA~a 1615 (1833)
+++||+||++.++. .|+++|+.+. ........++.+.. .+.++.+ ++..........||||||||++||||
T Consensus 89 ~~i~~v~Q~~~l~~-~ti~~n~~~~-~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARa 166 (253)
T d3b60a1 89 NQVALVSQNVHLFN-DTVANNIAYA-RTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARA 166 (253)
T ss_dssp HTEEEECSSCCCCS-SBHHHHHHTT-TTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHH
T ss_pred HEEEEEEECCCCCC-CCHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 06879950254478-6202433205-722089999999999981799997355441014348889849999999999999
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHHCC
Q ss_conf 90699989993878998999999999999998741699699996377888997767999998999999659667975118
Q 000224 1616 MIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 1695 (1833)
Q Consensus 1616 l~~~p~illLDEPt~GlDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~i~~~gs~~~l~~~~~ 1695 (1833)
|+.+|+|++|||||++||+.+++.+++.|+++. ++ +|+|++||+++.++ .||||++|++|++++.|++++|.++.+
T Consensus 167 l~~~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~-~Tvi~itH~l~~~~-~~D~v~vl~~G~Iv~~G~~~eLl~~~~ 242 (253)
T d3b60a1 167 LLRDSPILILDEATSALDTESERAIQAALDELQ--KN-RTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELLAQHG 242 (253)
T ss_dssp HHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH--TT-SEEEEECSCGGGTT-TCSEEEEEETTEEEEEECHHHHHHHTS
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC--CC-CEEEEEECCHHHHH-HCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 954998899516444589889999999998752--27-88999988799998-599999998999999889999986893
Q ss_pred C
Q ss_conf 9
Q 000224 1696 N 1696 (1833)
Q Consensus 1696 ~ 1696 (1833)
.
T Consensus 243 ~ 243 (253)
T d3b60a1 243 V 243 (253)
T ss_dssp S
T ss_pred H
T ss_conf 9
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=348.97 Aligned_cols=219 Identities=25% Similarity=0.441 Sum_probs=183.0
Q ss_pred EEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCC-CHHHHCC
Q ss_conf 999868999189865565421333359975881999995999968999999919988995079996850899-9687604
Q 000224 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARR 1543 (1833)
Q Consensus 1465 l~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~ 1543 (1833)
|+++|+++.|+.+ .+.+++|+||+|++||++|++|||||||||++++|+|+++|++|+|.++|.++.. +....|+
T Consensus 2 I~~~nvsf~Y~~~----~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~ 77 (241)
T d2pmka1 2 ITFRNIRFRYKPD----SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 77 (241)
T ss_dssp EEEEEEEEESSTT----SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHH
T ss_pred EEEEEEEEEECCC----CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHC
T ss_conf 2999999990899----960374248998499999999999998999999997357888889999999944002465535
Q ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH-----HHHHHC--CCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 4299805898798999999999999970999055999999-----999874--996201889899894699999999999
Q 000224 1544 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVM-----EKLVEF--DLLKHAKKPSFTLSGGNKRKLSVAIAM 1616 (1833)
Q Consensus 1544 ~ig~~pQ~~~l~~~ltv~e~l~~~~~l~g~~~~~~~~~v~-----~~l~~~--~L~~~~~~~~~~lSgG~krrl~iA~al 1616 (1833)
++|||||++.+++ .|++||+.+... .....++.+..+ +.++.+ ++....+.....||||||||++|||||
T Consensus 78 ~i~~v~Q~~~lf~-~Ti~eNi~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal 154 (241)
T d2pmka1 78 QVGVVLQDNVLLN-RSIIDNISLANP--GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARAL 154 (241)
T ss_dssp HEEEECSSCCCTT-SBHHHHHCTTST--TCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCC-CCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 2889824465578-400035223575--5438889999999755788876320134432787886698898987544344
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHHC
Q ss_conf 069998999387899899999999999999874169969999637788899776799999899999965966797511
Q 000224 1617 IGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRF 1694 (1833)
Q Consensus 1617 ~~~p~illLDEPt~GlDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~i~~~gs~~~l~~~~ 1694 (1833)
+.+|+|++|||||++||+.+++.+++.|+++. ++ +|+|++||+++.+. .||||++|++|++++.|++++|.++-
T Consensus 155 ~~~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~-~Tvi~itH~l~~~~-~~D~i~vl~~G~Iv~~G~~~ell~~~ 228 (241)
T d2pmka1 155 VNNPKILIFDEATSALDYESEHVIMRNMHKIC--KG-RTVIIIAHRLSTVK-NADRIIVMEKGKIVEQGKHKELLSEP 228 (241)
T ss_dssp TTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TT-SEEEEECSSGGGGT-TSSEEEEEETTEEEEEECHHHHHHST
T ss_pred HCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHH--CC-CEEEEEECCHHHHH-HCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 41651355647765559899999999999985--89-98999978899998-49999999899999988999998299
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=342.36 Aligned_cols=217 Identities=25% Similarity=0.406 Sum_probs=184.4
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCC-CHHHHC
Q ss_conf 1999868999189865565421333359975881999995999968999999919988995079996850899-968760
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAAR 1542 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~ 1542 (1833)
-|+++|+++.|+++ ...+++|+||+|++||+++++|||||||||++++|.|+++|++|+|.++|.++.. +....|
T Consensus 16 ~I~~~nvsf~Y~~~----~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 16 RIDIDHVSFQYNDN----EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CEEEEEEEECSCSS----SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred EEEEEEEEEEECCC----CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHH
T ss_conf 79999889995999----97606443899839989999889998099999999712786300015399875307888863
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC-----------CCCCCCCCCCHHHHHHHH
Q ss_conf 442998058987989999999999999709990559999999998749962-----------018898998946999999
Q 000224 1543 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK-----------HAKKPSFTLSGGNKRKLS 1611 (1833)
Q Consensus 1543 ~~ig~~pQ~~~l~~~ltv~e~l~~~~~l~g~~~~~~~~~v~~~l~~~~L~~-----------~~~~~~~~lSgG~krrl~ 1611 (1833)
+++|||||++.+++ .|++||+.+... ... ++++.+.++..++.+ ........||||||||++
T Consensus 92 ~~i~~v~Q~~~lf~-~Ti~eNi~~g~~--~~~----~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~ 164 (255)
T d2hyda1 92 NQIGLVQQDNILFS-DTVKENILLGRP--TAT----DEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLS 164 (255)
T ss_dssp HTEEEECSSCCCCS-SBHHHHHGGGCS--SCC----HHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHH
T ss_pred HEEEEEECCCCCCC-CCHHHHHHCCCC--CCC----HHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHH
T ss_conf 41456510156899-879999851586--799----99999999996979999736242010333888984999999999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
Q ss_conf 99999069998999387899899999999999999874169969999637788899776799999899999965966797
Q 000224 1612 VAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1691 (1833)
Q Consensus 1612 iA~al~~~p~illLDEPt~GlDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~i~~~gs~~~l~ 1691 (1833)
|||||+.+|++++|||||++||+.+++.+++.|.++. ++ +|+|++||+++.+. .||||++|++|++++.|++++|.
T Consensus 165 iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~--~~-~TvI~itH~~~~~~-~~D~ii~l~~G~iv~~G~~~eLl 240 (255)
T d2hyda1 165 IARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KD-RTTLIVAHRLSTIT-HADKIVVIENGHIVETGTHRELI 240 (255)
T ss_dssp HHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TT-SEEEEECSSGGGTT-TCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--CC-CEEEEEECCHHHHH-HCCEEEEEECCEEEEECCHHHHH
T ss_conf 9999855998999837654479779999999999875--38-88999968999998-59999999899999988999998
Q ss_pred HHCC
Q ss_conf 5118
Q 000224 1692 TRFG 1695 (1833)
Q Consensus 1692 ~~~~ 1695 (1833)
++.+
T Consensus 241 ~~~~ 244 (255)
T d2hyda1 241 AKQG 244 (255)
T ss_dssp HTTS
T ss_pred HCCC
T ss_conf 6884
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=345.21 Aligned_cols=212 Identities=21% Similarity=0.338 Sum_probs=170.3
Q ss_pred CEEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCC-CHHHH
Q ss_conf 51999868999189865565421333359975881999995999968999999919988995079996850899-96876
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAA 1541 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~~ 1541 (1833)
.+++++|+.+.| ++++|||+|++||++||+|||||||||++++|+|+. |++|+|.++|.++.. ...+.
T Consensus 2 ~il~~~dv~~~~----------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~ 70 (231)
T d1l7vc_ 2 IVMQLQDVAEST----------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKL 70 (231)
T ss_dssp EEEEEEEECCTT----------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHH
T ss_pred EEEEEECCCCCC----------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHH
T ss_conf 599998741571----------555888899489899999899980999999994887-995599999999986998999
Q ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC---
Q ss_conf 04429980589879899999999999997099905599999999987499620188989989469999999999906---
Q 000224 1542 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIG--- 1618 (1833)
Q Consensus 1542 ~~~ig~~pQ~~~l~~~ltv~e~l~~~~~l~g~~~~~~~~~v~~~l~~~~L~~~~~~~~~~lSgG~krrl~iA~al~~--- 1618 (1833)
+...+|++|........++++++.++.. ++...+.+.++++.+++.+..++++.+||||||||+++|+||++
T Consensus 71 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p 145 (231)
T d1l7vc_ 71 ALHRAYLSQQQTPPFATPVWHYLTLHQH-----DKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITP 145 (231)
T ss_dssp HHHEEEECSCCCCCSSCBHHHHHHHHCS-----CTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHCEEEECCCCCCCCCCHHHHHHHCCC-----HHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHHHCC
T ss_conf 8640245121357744209887641001-----46689999999986598767676844569988999999999985171
Q ss_pred ----CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
Q ss_conf ----99989993878998999999999999998741699699996377888997767999998999999659667975
Q 000224 1619 ----DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1619 ----~p~illLDEPt~GlDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~i~~~gs~~~l~~ 1692 (1833)
+|++++|||||+||||.++..++++|+++++ .| +|||++||+|+++..+|||+++|++|++++.|+++++.+
T Consensus 146 ~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~-~g-~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~ 221 (231)
T d1l7vc_ 146 QANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-QG-LAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 221 (231)
T ss_dssp TTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH-TT-CEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSC
T ss_pred CCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CC-CEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHC
T ss_conf 33899889997187777898999999999999986-79-999999677999999799999997998999889999818
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=339.85 Aligned_cols=209 Identities=19% Similarity=0.309 Sum_probs=185.2
Q ss_pred CEEEEEEEEEEECCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCC-CHHHHHC
Q ss_conf 309999669994277884010132358884780999946999975799998809999995159996712782-1788604
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 636 (1833)
Q Consensus 558 ~~i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~di~~-~~~~~r~ 636 (1833)
..++++|+++.| +++++||++.+||+++|+|||||||||++++|+|+. |++|+|.++|.++.. ...+.+.
T Consensus 2 ~il~~~dv~~~~--------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~ 72 (231)
T d1l7vc_ 2 IVMQLQDVAEST--------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLAL 72 (231)
T ss_dssp EEEEEEEECCTT--------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHH
T ss_pred EEEEEECCCCCC--------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHH
T ss_conf 599998741571--------555888899489899999899980999999994887-99559999999998699899986
Q ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-----
Q ss_conf 469982689889999999999999996099978899999999998399830063237889568999999999718-----
Q 000224 637 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIG----- 711 (1833)
Q Consensus 637 ~iG~cpQ~~~L~~~LTv~EhL~~~~~lkg~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSGG~KrkLsiA~Alig----- 711 (1833)
..++.+|........++++.+.++.. ....++.++++++.+++.++.++.+.+||||||||+++|+|++.
T Consensus 73 ~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~ 147 (231)
T d1l7vc_ 73 HRAYLSQQQTPPFATPVWHYLTLHQH-----DKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQA 147 (231)
T ss_dssp HEEEECSCCCCCSSCBHHHHHHHHCS-----CTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTT
T ss_pred HCEEEECCCCCCCCCCHHHHHHHCCC-----HHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 40245121357744209887641001-----4668999999998659876767684456998899999999998517133
Q ss_pred --CCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHH
Q ss_conf --994999828889999999999999999983-896999970797799853389999609879962697789
Q 000224 712 --DSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFL 780 (1833)
Q Consensus 712 --~p~iliLDEPTsGLDp~srr~iw~~l~~~~-~grtiiltTH~mdEad~l~DrI~Il~~G~l~~~Gs~~~L 780 (1833)
+|++++|||||+||||.+++.++++|++++ +|.|||++||+|+++..+||||++|++|++++.|++.++
T Consensus 148 ~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev 219 (231)
T d1l7vc_ 148 NPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEV 219 (231)
T ss_dssp CTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHH
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHH
T ss_conf 899889997187777898999999999999986799999996779999997999999979989998899998
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=329.25 Aligned_cols=191 Identities=23% Similarity=0.377 Sum_probs=134.2
Q ss_pred CCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCEEEECCCCCCCCCCCHHH
Q ss_conf 01013235888478099994699997579999880999999515999671278217886044699826898899999999
Q 000224 576 CCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVRE 655 (1833)
Q Consensus 576 ~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~di~~~~~~~r~~iG~cpQ~~~L~~~LTv~E 655 (1833)
..+++|+||++++||+++++|||||||||++++|+|+++|++|+|.++| .++||||++.+|+. |++|
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g------------~i~~v~Q~~~l~~~-tv~e 115 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------RVSFCSQFSWIMPG-TIKE 115 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS------------CEEEECSSCCCCSE-EHHH
T ss_pred CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC------------EEEEEECCCCCCCC-EEEC
T ss_conf 7677375999859999999989998299999999579747882899999------------99998164302676-0321
Q ss_pred HHHHHHHHCCCCHHHHHHHHHH---HHHHCCCCCCC----CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
Q ss_conf 9999999609997889999999---99983998300----6323788956899999999971899499982888999999
Q 000224 656 HLEMFAVLKGVKEELLESVVAE---MVDEVGLADKV----NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPY 728 (1833)
Q Consensus 656 hL~~~~~lkg~~~~~~~~~v~~---~l~~l~L~~~~----~~~~~~LSGG~KrkLsiA~Alig~p~iliLDEPTsGLDp~ 728 (1833)
|+.+.. .......++.++. ......+.+.. +....+||||||||+++|+||+.+|++++|||||++|||.
T Consensus 116 ni~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~ 192 (281)
T d1r0wa_ 116 NIIFGV---SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVF 192 (281)
T ss_dssp HHTTTS---CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHH
T ss_pred CCCCCC---CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHH
T ss_conf 420333---45605799999997769999846123323555542377999999999999998696351333855448989
Q ss_pred HHHHHHHH-HHHHHCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 99999999-99983896999970797799853389999609879962697789865
Q 000224 729 SMRLTWQL-IKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 783 (1833)
Q Consensus 729 srr~iw~~-l~~~~~grtiiltTH~mdEad~l~DrI~Il~~G~l~~~Gs~~~Lk~~ 783 (1833)
+++.+|+. +...++++|+|++||+++.+. .||||++|++|++++.|++.+|.+.
T Consensus 193 ~~~~i~~~~~~~~~~~~tvi~itH~~~~l~-~aDrI~vl~~G~i~~~Gt~~eL~~~ 247 (281)
T d1r0wa_ 193 TEEQVFESCVCKLMANKTRILVTSKMEHLR-KADKILILHQGSSYFYGTFSELQSL 247 (281)
T ss_dssp HHHHHHHHCCCCCTTTSEEEEECSCHHHHH-TCSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECHHHHHH-HCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 999999999988628999999925289998-5999999989999998789999605
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.8e-45 Score=319.65 Aligned_cols=195 Identities=24% Similarity=0.356 Sum_probs=137.5
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHCC
Q ss_conf 19998689991898655654213333599758819999959999689999999199889950799968508999687604
Q 000224 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1543 (1833)
Q Consensus 1464 ~l~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~ 1543 (1833)
.|+++||++.|+ +.+++++||++++||++||+|||||||||++++|+|+++|++|+|.++|.++. +.+.
T Consensus 2 ~lev~~ls~~y~-------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~----~~~~ 70 (200)
T d1sgwa_ 2 KLEIRDLSVGYD-------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT----KVKG 70 (200)
T ss_dssp EEEEEEEEEESS-------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG----GGGG
T ss_pred EEEEEEEEEEEC-------CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHH----HHCC
T ss_conf 599998999939-------92884208898599899999999971999999996620567788999989626----7367
Q ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 42998058987989999999999999709990559999999998749962018898998946999999999990699989
Q 000224 1544 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1623 (1833)
Q Consensus 1544 ~ig~~pQ~~~l~~~ltv~e~l~~~~~l~g~~~~~~~~~v~~~l~~~~L~~~~~~~~~~lSgG~krrl~iA~al~~~p~il 1623 (1833)
+++|+||+..+++.+|+.|++.+.+.+++.... ++++.+.++.+++.+. ++++++||||||||+++|+||+.+|+++
T Consensus 71 ~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~--~~~~~~~l~~~~~~~~-~~~~~~LSgG~~qrv~ia~al~~~~~ll 147 (200)
T d1sgwa_ 71 KIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN--KNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIY 147 (200)
T ss_dssp GEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCC--HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEE
T ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCC--HHHHHHHHHHCCCCCC-CCCCCCCCCCHHHHHHHHHHHHCCCCEE
T ss_conf 089995013578882899999999975488637--9999999987488563-0126868971888899999886499899
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEE
Q ss_conf 993878998999999999999998741699699996377888997767999998
Q 000224 1624 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMV 1677 (1833)
Q Consensus 1624 lLDEPt~GlDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~ 1677 (1833)
+|||||+|||+.+++.+++.|.++.+++ +.+|+.++|++ ++||++.+|.
T Consensus 148 llDEPt~gLD~~~~~~i~~~l~~~~~~~-~~~ii~~~~~l----~~~D~~~~l~ 196 (200)
T d1sgwa_ 148 VLDDPVVAIDEDSKHKVLKSILEILKEK-GIVIISSREEL----SYCDVNENLH 196 (200)
T ss_dssp EEESTTTTSCTTTHHHHHHHHHHHHHHH-SEEEEEESSCC----TTSSEEEEGG
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEEECHH----HHCCHHHHEE
T ss_conf 9868620169999999999999998679-99999991625----4416123401
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.3e-44 Score=315.02 Aligned_cols=194 Identities=22% Similarity=0.362 Sum_probs=169.7
Q ss_pred EEEEEEEEEEECCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCE
Q ss_conf 09999669994277884010132358884780999946999975799998809999995159996712782178860446
Q 000224 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 638 (1833)
Q Consensus 559 ~i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~di~~~~~~~r~~i 638 (1833)
.|+++||++.|. +.+++|+||++.+||+++|+|||||||||++++|+|+++|++|+|.++|.++. ..+..+
T Consensus 2 ~lev~~ls~~y~-----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~----~~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD-----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT----KVKGKI 72 (200)
T ss_dssp EEEEEEEEEESS-----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG----GGGGGE
T ss_pred EEEEEEEEEEEC-----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHH----HHCCCE
T ss_conf 599998999939-----92884208898599899999999971999999996620567788999989626----736708
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 99826898899999999999999960999788999999999983998300632378895689999999997189949998
Q 000224 639 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVIL 718 (1833)
Q Consensus 639 G~cpQ~~~L~~~LTv~EhL~~~~~lkg~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSGG~KrkLsiA~Alig~p~iliL 718 (1833)
+++||+..+++.+|++|++.+.+.+.+.... ++++.+.++.+++.+. ++++.+||||||||+++|+|++.+|++++|
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~--~~~~~~~l~~~~~~~~-~~~~~~LSgG~~qrv~ia~al~~~~~llll 149 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVN--KNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVL 149 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCC--HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCCC--HHHHHHHHHHCCCCCC-CCCCCCCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 9995013578882899999999975488637--9999999987488563-012686897188889999988649989998
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHH-C-CCEEEEECCCHHHHHHHCCEEEEEEC
Q ss_conf 28889999999999999999983-8-96999970797799853389999609
Q 000224 719 DEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMAN 768 (1833)
Q Consensus 719 DEPTsGLDp~srr~iw~~l~~~~-~-grtiiltTH~mdEad~l~DrI~Il~~ 768 (1833)
||||+|||+.+++.+|+.|.+.. + +.+||.++|++ .+||++.+|++
T Consensus 150 DEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 150 DDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp ESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC----TTSSEEEEGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECHH----HHCCHHHHEEE
T ss_conf 6862016999999999999999867999999991625----44161234010
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.8e-45 Score=320.21 Aligned_cols=192 Identities=24% Similarity=0.381 Sum_probs=154.6
Q ss_pred CCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHCCCEEEEECCCCCCCCCCHHH
Q ss_conf 42133335997588199999599996899999991998899507999685089996876044299805898798999999
Q 000224 1483 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQE 1562 (1833)
Q Consensus 1483 ~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~ig~~pQ~~~l~~~ltv~e 1562 (1833)
+.+++|+||+|++||++||+|||||||||++++|+|+++|++|+|.++| +++|+||++.+++ .|++|
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g------------~i~~v~Q~~~l~~-~tv~e 115 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------RVSFCSQFSWIMP-GTIKE 115 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS------------CEEEECSSCCCCS-EEHHH
T ss_pred CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC------------EEEEEECCCCCCC-CEEEC
T ss_conf 7677375999859999999989998299999999579747882899999------------9999816430267-60321
Q ss_pred HHHHHHHHCCCCHHHHHHHHHH-----HHHHCC--CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
Q ss_conf 9999999709990559999999-----998749--962018898998946999999999990699989993878998999
Q 000224 1563 HLELYARIKGVAEYRMDDVVME-----KLVEFD--LLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPI 1635 (1833)
Q Consensus 1563 ~l~~~~~l~g~~~~~~~~~v~~-----~l~~~~--L~~~~~~~~~~lSgG~krrl~iA~al~~~p~illLDEPt~GlDp~ 1635 (1833)
|+.+.. ........+..+. .+..+. +....++...+||||||||+++|+||+.+|+|++|||||++|||.
T Consensus 116 ni~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~ 192 (281)
T d1r0wa_ 116 NIIFGV---SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVF 192 (281)
T ss_dssp HHTTTS---CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHH
T ss_pred CCCCCC---CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHH
T ss_conf 420333---45605799999997769999846123323555542377999999999999998696351333855448989
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 9999999999987416996999963778889977679999989999996596679751
Q 000224 1636 AKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693 (1833)
Q Consensus 1636 ~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~i~~~gs~~~l~~~ 1693 (1833)
+++.+++.+.... ..+ +|+|++||+++.+. .||||++|++|++++.|++++|.+.
T Consensus 193 ~~~~i~~~~~~~~-~~~-~tvi~itH~~~~l~-~aDrI~vl~~G~i~~~Gt~~eL~~~ 247 (281)
T d1r0wa_ 193 TEEQVFESCVCKL-MAN-KTRILVTSKMEHLR-KADKILILHQGSSYFYGTFSELQSL 247 (281)
T ss_dssp HHHHHHHHCCCCC-TTT-SEEEEECSCHHHHH-TCSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHH-HCC-CEEEEEECHHHHHH-HCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 9999999999886-289-99999925289998-5999999989999998789999605
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.54 E-value=3.3e-17 Score=129.29 Aligned_cols=156 Identities=13% Similarity=0.070 Sum_probs=90.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHCCCEEEEECCCC----CCCCCCHHHHHHHHHHHCCCC
Q ss_conf 9999599996899999991998899507999685089996876044299805898----798999999999999970999
Q 000224 1499 FGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDA----LLEYLTVQEHLELYARIKGVA 1574 (1833)
Q Consensus 1499 ~gllG~NGAGKTTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~ig~~pQ~~~----l~~~ltv~e~l~~~~~l~g~~ 1574 (1833)
++|.||||+||||++++|+|.++|+.|.+.+.+.+..... .+.++..+... .....+..+... ..+ .+.
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~- 75 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETK----KRTGFRIITTEGKKKIFSSKFFTSKKL-VGS-YGV- 75 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC----------CCEEEEEETTCCEEEEEETTCCCSSE-ETT-EEE-
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHC-
T ss_conf 9999899938999999998148888646998771328888----765311233667778875411345544-302-303-
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 05599999999987499620188989989469999999999906999899938789989999999999999987416996
Q 000224 1575 EYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKT 1654 (1833)
Q Consensus 1575 ~~~~~~~v~~~l~~~~L~~~~~~~~~~lSgG~krrl~iA~al~~~p~illLDEPt~GlDp~~r~~i~~~i~~l~~~~~~~ 1654 (1833)
+.....+++|++++.++++++..+|+++++|||... ....+..++.+.++.... +.
T Consensus 76 ---------------------~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~--~~~~~~~~~~l~~~l~~~-~~ 131 (178)
T d1ye8a1 76 ---------------------NVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKM--ELFSKKFRDLVRQIMHDP-NV 131 (178)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTT--GGGCHHHHHHHHHHHTCT-TS
T ss_pred ---------------------CCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCC--CHHHHHHHHHHHHHHCCC-CC
T ss_conf ---------------------762566532013789999997409974230277731--004579999999875057-97
Q ss_pred EEEEECCCHHHHHHHCCEEEEEECCEEEEECC
Q ss_conf 99996377888997767999998999999659
Q 000224 1655 AVILTTHSMNEAQALCTRIGIMVGGQLRCIGS 1686 (1833)
Q Consensus 1655 tiilttH~m~e~e~l~dri~il~~G~i~~~gs 1686 (1833)
++++++|..+ ...+|+++..+.+|+++..+.
T Consensus 132 ~il~~~h~~~-~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 132 NVVATIPIRD-VHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp EEEEECCSSC-CSHHHHHHHTCTTCEEEECCT
T ss_pred EEEEEECCHH-HHHHHCEEEEEECCEEEEECC
T ss_conf 8999974477-898636599871999999899
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.54 E-value=1.7e-13 Score=104.13 Aligned_cols=77 Identities=19% Similarity=0.195 Sum_probs=61.2
Q ss_pred CCCCCCCHHHHHHHHHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCE
Q ss_conf 89899894699999999999----06999899938789989999999999999987416996999963778889977679
Q 000224 1597 KPSFTLSGGNKRKLSVAIAM----IGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTR 1672 (1833)
Q Consensus 1597 ~~~~~lSgG~krrl~iA~al----~~~p~illLDEPt~GlDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dr 1672 (1833)
+....+|||+|..+++|..+ ...+++++||||+++||+..++.+-++|.++. .. ++-+|+|||+.+.++ .+|+
T Consensus 328 ~~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~-~~-~~Q~I~iTH~~~~~~-~ad~ 404 (427)
T d1w1wa_ 328 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHR-NP-DLQFIVISLKNTMFE-KSDA 404 (427)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHC-BT-TBEEEEECSCHHHHT-TCSE
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CC-CCEEEEEECCHHHHH-HCCC
T ss_conf 34333223047999999999995479997799968877789999999999999972-89-988999958789997-3661
Q ss_pred EEEE
Q ss_conf 9999
Q 000224 1673 IGIM 1676 (1833)
Q Consensus 1673 i~il 1676 (1833)
+..+
T Consensus 405 ~~~V 408 (427)
T d1w1wa_ 405 LVGV 408 (427)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 7999
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.50 E-value=1.2e-16 Score=125.44 Aligned_cols=152 Identities=16% Similarity=0.075 Sum_probs=100.8
Q ss_pred EEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCEEEECC-----CCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 9994699997579999880999999515999671278217886044699826-----89889999999999999996099
Q 000224 592 LALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQ-----YDILFPELTVREHLEMFAVLKGV 666 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~di~~~~~~~r~~iG~cpQ-----~~~L~~~LTv~EhL~~~~~lkg~ 666 (1833)
+++.||||+||||+++.++|.++|+.|.+.+++.+..... ...++..+ ...+... +..+.... +
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~- 71 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETK----KRTGFRIITTEGKKKIFSSK-FFTSKKLV-----G- 71 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC----------CCEEEEEETTCCEEEEEET-TCCCSSEE-----T-
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHH----HHHHHHHHHHHHHHHHHHHH-HHHHHHHH-----H-
T ss_conf 9999899938999999998148888646998771328888----76531123366777887541-13455443-----0-
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-HC-CC
Q ss_conf 97889999999999839983006323788956899999999971899499982888999999999999999998-38-96
Q 000224 667 KEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-KK-GR 744 (1833)
Q Consensus 667 ~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSGG~KrkLsiA~Alig~p~iliLDEPTsGLDp~srr~iw~~l~~~-~~-gr 744 (1833)
....+.....+++|++++..++.++..+|+++++|||.. ++...+..++.+.+. +. +.
T Consensus 72 ------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~--~~~~~~~~~~~l~~~l~~~~~ 131 (178)
T d1ye8a1 72 ------------------SYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGK--MELFSKKFRDLVRQIMHDPNV 131 (178)
T ss_dssp ------------------TEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCST--TGGGCHHHHHHHHHHHTCTTS
T ss_pred ------------------HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCC--CCHHHHHHHHHHHHHHCCCCC
T ss_conf ------------------230376256653201378999999740997423027773--100457999999987505797
Q ss_pred EEEEECCCHHHHHHHCCEEEEEECCEEEEEC
Q ss_conf 9999707977998533899996098799626
Q 000224 745 IILLTTHSMDEAEELGDRIAIMANGSLKCCG 775 (1833)
Q Consensus 745 tiiltTH~mdEad~l~DrI~Il~~G~l~~~G 775 (1833)
++|+++|..+ ...++|++..+.+|++...+
T Consensus 132 ~il~~~h~~~-~~~~~~~i~~~~~~~i~~v~ 161 (178)
T d1ye8a1 132 NVVATIPIRD-VHPLVKEIRRLPGAVLIELT 161 (178)
T ss_dssp EEEEECCSSC-CSHHHHHHHTCTTCEEEECC
T ss_pred EEEEEECCHH-HHHHHCEEEEEECCEEEEEC
T ss_conf 8999974477-89863659987199999989
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.34 E-value=4.9e-11 Score=87.54 Aligned_cols=73 Identities=29% Similarity=0.309 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHHHHHH----HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEE
Q ss_conf 37889568999999999----718994999828889999999999999999983896999970797799853389999
Q 000224 692 VRALSGGMKRKLSLGIA----LIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAI 765 (1833)
Q Consensus 692 ~~~LSGG~KrkLsiA~A----lig~p~iliLDEPTsGLDp~srr~iw~~l~~~~~grtiiltTH~mdEad~l~DrI~I 765 (1833)
...+|+|+|..+.++.. ....+.++++|||-++|+|...+.+-++|+...++.-+|+|||+.+-.+ .+|++.+
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~-~~d~~~~ 293 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVME-AADLLHG 293 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGG-GCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH-HCCCEEE
T ss_conf 1102577766777776655654226744554320335797899999999998554887999989889997-3242899
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.17 E-value=6.3e-10 Score=79.99 Aligned_cols=79 Identities=25% Similarity=0.309 Sum_probs=63.0
Q ss_pred CCCCCCCHHHHHHHHHHHH----HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCE
Q ss_conf 8989989469999999999----906999899938789989999999999999987416996999963778889977679
Q 000224 1597 KPSFTLSGGNKRKLSVAIA----MIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTR 1672 (1833)
Q Consensus 1597 ~~~~~lSgG~krrl~iA~a----l~~~p~illLDEPt~GlDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dr 1672 (1833)
.....+|+|+|+.+.++.. ....+.+++.|||-++|+|...+.+.+.|++.. + . .-||+|||+.+-++ .+|+
T Consensus 215 ~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~-~-~-~QviitTHsp~~~~-~~d~ 290 (308)
T d1e69a_ 215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-K-H-TQFIVITHNKIVME-AADL 290 (308)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-T-T-SEEEEECCCTTGGG-GCSE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHC-C-C-CEEEEEECCHHHHH-HCCC
T ss_conf 10110257776677777665565422674455432033579789999999999855-4-8-87999989889997-3242
Q ss_pred EEE--EECC
Q ss_conf 999--9899
Q 000224 1673 IGI--MVGG 1679 (1833)
Q Consensus 1673 i~i--l~~G 1679 (1833)
+.. |.+|
T Consensus 291 ~~~v~~~~g 299 (308)
T d1e69a_ 291 LHGVTMVNG 299 (308)
T ss_dssp EEEEEESSS
T ss_pred EEEEEEECC
T ss_conf 899999699
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.81 E-value=2.3e-08 Score=69.43 Aligned_cols=77 Identities=18% Similarity=0.208 Sum_probs=63.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHCCEE
Q ss_conf 632378895689999999997----189949998288899999999999999999838-969999707977998533899
Q 000224 689 NIVVRALSGGMKRKLSLGIAL----IGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK-GRIILLTTHSMDEAEELGDRI 763 (1833)
Q Consensus 689 ~~~~~~LSGG~KrkLsiA~Al----ig~p~iliLDEPTsGLDp~srr~iw~~l~~~~~-grtiiltTH~mdEad~l~DrI 763 (1833)
......||||||..+++|..+ +..+++++||||+++|||..++.+-++|.+.+. +.-+|+|||..+-++. ||++
T Consensus 327 ~~~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~-ad~~ 405 (427)
T d1w1wa_ 327 FKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEK-SDAL 405 (427)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTT-CSEE
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH-CCCE
T ss_conf 434333223047999999999995479997799968877789999999999999972899889999587899973-6617
Q ss_pred EEE
Q ss_conf 996
Q 000224 764 AIM 766 (1833)
Q Consensus 764 ~Il 766 (1833)
+.+
T Consensus 406 ~~V 408 (427)
T d1w1wa_ 406 VGV 408 (427)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 999
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.52 E-value=1.7e-06 Score=56.78 Aligned_cols=46 Identities=17% Similarity=0.274 Sum_probs=25.4
Q ss_pred CCCEEEEECCCCCCCHHHHHHH-HHHHHHHH-CCCEEEEECCCHHHHH
Q ss_conf 9949998288899999999999-99999983-8969999707977998
Q 000224 712 DSKVVILDEPTSGMDPYSMRLT-WQLIKKIK-KGRIILLTTHSMDEAE 757 (1833)
Q Consensus 712 ~p~iliLDEPTsGLDp~srr~i-w~~l~~~~-~grtiiltTH~mdEad 757 (1833)
+..++++||+..|-||.....+ |.++..+. .+...+++||+.+-.+
T Consensus 114 ~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 114 ENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp TTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf 772785545456862332002588888888623761378652023332
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.29 E-value=8.5e-06 Score=52.02 Aligned_cols=44 Identities=20% Similarity=0.400 Sum_probs=24.5
Q ss_pred CEEEEECCCCCCCHHHHHHH-HHHHHHHH--CCCEEEEECCCHHHHH
Q ss_conf 49998288899999999999-99999983--8969999707977998
Q 000224 714 KVVILDEPTSGMDPYSMRLT-WQLIKKIK--KGRIILLTTHSMDEAE 757 (1833)
Q Consensus 714 ~iliLDEPTsGLDp~srr~i-w~~l~~~~--~grtiiltTH~mdEad 757 (1833)
.++++||+..|-+|..+..+ |.++..+. .+..+++|||+.+..+
T Consensus 122 sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~~ 168 (234)
T d1wb9a2 122 SLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ 168 (234)
T ss_dssp EEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH
T ss_conf 08853222358774566678987645432045442898524687764
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.11 E-value=6.6e-05 Score=46.00 Aligned_cols=54 Identities=19% Similarity=0.235 Sum_probs=38.1
Q ss_pred HCCCCEEEEECCCCCCCHHHHH-HHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCE
Q ss_conf 0699989993878998999999-9999999987416996999963778889977679
Q 000224 1617 IGDPPIVILDEPSTGMDPIAKR-FMWEVISRLSTRQGKTAVILTTHSMNEAQALCTR 1672 (1833)
Q Consensus 1617 ~~~p~illLDEPt~GlDp~~r~-~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dr 1672 (1833)
+.+..++++||+..|-||.... ..|.++..+.+ .+ ..++++||+.+-.+.-..+
T Consensus 112 ~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~-~~-~~~i~tTH~~eL~~l~~~~ 166 (224)
T d1ewqa2 112 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RR-AYTLFATHYFELTALGLPR 166 (224)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HT-CEEEEECCCHHHHTCCCTT
T ss_pred CCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHH-CC-CCEEEEEECHHHHHHHHCC
T ss_conf 8977278554545686233200258888888862-37-6137865202333221021
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.99 E-value=8e-05 Score=45.42 Aligned_cols=129 Identities=19% Similarity=0.277 Sum_probs=70.4
Q ss_pred EEEEEEEEEECCCEEEEECCCCCCHHHHHHHHH--------CCCCCCCEEEEECCEECCCCHHHHCCCEEEEECCCCCCC
Q ss_conf 133335997588199999599996899999991--------998899507999685089996876044299805898798
Q 000224 1485 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMIS--------GEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLE 1556 (1833)
Q Consensus 1485 av~~is~~v~~Gei~gllG~NGAGKTTll~~l~--------G~~~p~~G~i~i~G~~i~~~~~~~~~~ig~~pQ~~~l~~ 1556 (1833)
+-+|++++ +.+.+.-|-|||.+||||.+|.+. |..-|-. .+.+ +-.+.++-
T Consensus 31 VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~-~a~~-------------------~~~d~I~~ 89 (234)
T d1wb9a2 31 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQ-KVEI-------------------GPIDRIFT 89 (234)
T ss_dssp CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSS-EEEE-------------------CCCCEEEE
T ss_pred CCEEEEEC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEECC-CEEC-------------------CCCHHHEE
T ss_conf 64057988-995399995467313689999879999998729767417-6661-------------------34420234
Q ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
Q ss_conf 99999999999997099905599999999987499620188989989469999999999906999899938789989999
Q 000224 1557 YLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIA 1636 (1833)
Q Consensus 1557 ~ltv~e~l~~~~~l~g~~~~~~~~~v~~~l~~~~L~~~~~~~~~~lSgG~krrl~iA~al~~~p~illLDEPt~GlDp~~ 1636 (1833)
.+...|.+.- |.+ ++. .+-++++-.+--..+..++++||+..|=+|..
T Consensus 90 ~~~~~d~~~~-----~~S--------------------------~F~-~E~~~~~~il~~~~~~sLvliDE~~~gT~~~e 137 (234)
T d1wb9a2 90 RVGAADDLAS-----GRS--------------------------TFM-VEMTETANILHNATEYSLVLMDEIGRGTSTYD 137 (234)
T ss_dssp EEC------------------------------------------CH-HHHHHHHHHHHHCCTTEEEEEESCCCCSSSSH
T ss_pred EECCCCCCCC-----CHH--------------------------HHH-HHHHHHHHHHHHCCCCCEEEECCCCCCCCHHH
T ss_conf 8746753436-----531--------------------------899-99999999997454660885322235877456
Q ss_pred HHHH-HHHHHHHHHCCCCEEEEEECCCHHHHH
Q ss_conf 9999-999999874169969999637788899
Q 000224 1637 KRFM-WEVISRLSTRQGKTAVILTTHSMNEAQ 1667 (1833)
Q Consensus 1637 r~~i-~~~i~~l~~~~~~~tiilttH~m~e~e 1667 (1833)
...+ |.++..+..+ .+..+++|||..+..+
T Consensus 138 g~~l~~a~l~~l~~~-~~~~~i~tTH~~~l~~ 168 (234)
T d1wb9a2 138 GLSLAWACAENLANK-IKALTLFATHYFELTQ 168 (234)
T ss_dssp HHHHHHHHHHHHHHT-TCCEEEEECSCGGGGG
T ss_pred HHHHHHHHHHHHHCC-CCCEEEEECCHHHHHH
T ss_conf 667898764543204-5442898524687764
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.88 E-value=0.0029 Score=34.84 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=19.7
Q ss_pred CCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 1013235888478099994699997579999880
Q 000224 577 CAVNSLQLTLYENQILALLGHNGAGKSTTISMLV 610 (1833)
Q Consensus 577 ~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~ 610 (1833)
..+|++.-.+.+|+++.+.|+.|+||||++.-++
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 6688874697898089999479997999999999
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.80 E-value=0.0006 Score=39.50 Aligned_cols=35 Identities=20% Similarity=0.178 Sum_probs=24.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 88199999599996899999991998899507999
Q 000224 1495 AGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFI 1529 (1833)
Q Consensus 1495 ~Gei~gllG~NGAGKTTll~~l~G~~~p~~G~i~i 1529 (1833)
+|.+..++|+.|+||||+++.|.|......|++.-
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~ 128 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 128 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCCC
T ss_conf 69808997889877888877305355501068420
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.66 E-value=0.006 Score=32.73 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=11.6
Q ss_pred CEEEEECCCCCCHHHHHHHHH
Q ss_conf 199999599996899999991
Q 000224 1497 ECFGFLGTNGAGKTTTLSMIS 1517 (1833)
Q Consensus 1497 ei~gllG~NGAGKTTll~~l~ 1517 (1833)
.++.|+||+|+|||||+-=|+
T Consensus 13 ~vi~lvGptGvGKTTTiAKLA 33 (211)
T d1j8yf2 13 YVIMLVGVQGTGKATTAGKLA 33 (211)
T ss_dssp EEEEEECSCCC----HHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 899998999999899999999
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.65 E-value=0.013 Score=30.44 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=11.3
Q ss_pred EECCCEEEEECCCCCCHHHHHHHH
Q ss_conf 758819999959999689999999
Q 000224 1493 VQAGECFGFLGTNGAGKTTTLSMI 1516 (1833)
Q Consensus 1493 v~~Gei~gllG~NGAGKTTll~~l 1516 (1833)
+++|.++-+.|+.|+||||+..-+
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qi 46 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRF 46 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHH
T ss_conf 869849999918999999999999
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.60 E-value=0.0017 Score=36.36 Aligned_cols=156 Identities=14% Similarity=0.066 Sum_probs=79.1
Q ss_pred CCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHCCCEEEEECCCCCCCCCCHHH
Q ss_conf 42133335997588199999599996899999991998899507999685089996876044299805898798999999
Q 000224 1483 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQE 1562 (1833)
Q Consensus 1483 ~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~ig~~pQ~~~l~~~ltv~e 1562 (1833)
...+|++...+.+||++.+.|+.|+||||+..-++--.....| .++.|+.- +++..+
T Consensus 22 ~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g-----------------~~v~~~s~------E~~~~~ 78 (277)
T d1cr2a_ 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG-----------------KKVGLAML------EESVEE 78 (277)
T ss_dssp CTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSC-----------------CCEEEEES------SSCHHH
T ss_pred CHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC-----------------CCEEEEEE------CCCHHH
T ss_conf 3668887469789808999947999799999999972655336-----------------63457640------111135
Q ss_pred HH-HHHHHHCCCCHHHHH---------HHHHHHHHHC-CCCC-CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 99-999997099905599---------9999999874-9962-0188989989469999999999906999899938789
Q 000224 1563 HL-ELYARIKGVAEYRMD---------DVVMEKLVEF-DLLK-HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPST 1630 (1833)
Q Consensus 1563 ~l-~~~~~l~g~~~~~~~---------~~v~~~l~~~-~L~~-~~~~~~~~lSgG~krrl~iA~al~~~p~illLDEPt~ 1630 (1833)
.. ++.+...+++..... +...++++.. +... ..................-...--.+|+++++|=-+
T Consensus 79 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvID~l~- 157 (277)
T d1cr2a_ 79 TAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHIS- 157 (277)
T ss_dssp HHHHHHHHHTTCCGGGCHHHHHHHHHTSHHHHHHHHHHSSSCEEEECCC-CCCHHHHHHHHHHHHHTTCCSEEEEEEEE-
T ss_pred HHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCC-
T ss_conf 7769999864587101012222214567788898874035214662143310689999986543213676259970542-
Q ss_pred CCCH--------HHHHHHHHHHHHHHHCCCCEEEEEECCCH
Q ss_conf 9899--------99999999999987416996999963778
Q 000224 1631 GMDP--------IAKRFMWEVISRLSTRQGKTAVILTTHSM 1663 (1833)
Q Consensus 1631 GlDp--------~~r~~i~~~i~~l~~~~~~~tiilttH~m 1663 (1833)
-|++ .....+..-+++++.+.+ ++|++++|--
T Consensus 158 ~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~-i~vi~~~q~~ 197 (277)
T d1cr2a_ 158 IVVSASGESDERKMIDNLMTKLKGFAKSTG-VVLVVICHLK 197 (277)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHC-CEEEEEEECC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCCEEECCCC
T ss_conf 120346544306778999999999765016-5520310356
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=96.45 E-value=0.0034 Score=34.35 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=12.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 1999995999968999999919
Q 000224 1497 ECFGFLGTNGAGKTTTLSMISG 1518 (1833)
Q Consensus 1497 ei~gllG~NGAGKTTll~~l~G 1518 (1833)
.++.|+||||+||||++-=|+.
T Consensus 12 ~vi~lvGptGvGKTTTiAKLAa 33 (213)
T d1vmaa2 12 FVIMVVGVNGTGKTTSCGKLAK 33 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999989999988999999999
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.30 E-value=0.022 Score=28.96 Aligned_cols=20 Identities=40% Similarity=0.576 Sum_probs=10.7
Q ss_pred EEEEEECCCCCCHHHHHHHH
Q ss_conf 09999469999757999988
Q 000224 590 QILALLGHNGAGKSTTISML 609 (1833)
Q Consensus 590 ei~~LLG~NGAGKSTll~iL 609 (1833)
+++.+.|+.||||||+.+-+
T Consensus 15 ~liil~G~pGsGKST~a~~l 34 (172)
T d1yj5a2 15 EVVVAVGFPGAGKSTFIQEH 34 (172)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
T ss_conf 89999899999899999999
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.29 E-value=0.014 Score=30.30 Aligned_cols=99 Identities=22% Similarity=0.238 Sum_probs=57.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 78099994699997579999880999999515999671278217886044699826898899999999999999960999
Q 000224 588 ENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK 667 (1833)
Q Consensus 588 ~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~di~~~~~~~r~~iG~cpQ~~~L~~~LTv~EhL~~~~~lkg~~ 667 (1833)
.-.|++|+||+|+|||||+-=|+-.+. ...+.++++-=... ..-..|.|..|+.+-|++
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~------------------~~g~kV~lit~Dt~---R~ga~eQL~~~a~~l~v~ 69 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK------------------KKGFKVGLVGADVY---RPAALEQLQQLGQQIGVP 69 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH------------------HTTCCEEEEECCCS---SHHHHHHHHHHHHHHTCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH------------------HCCCCEEEEEEECC---CCCHHHHHHHHCCCCCCC
T ss_conf 998999989999998999999999999------------------77993699972023---551567898740146842
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
Q ss_conf 78899999999998399830063237889568999999999718994999828889999999
Q 000224 668 EELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYS 729 (1833)
Q Consensus 668 ~~~~~~~v~~~l~~l~L~~~~~~~~~~LSGG~KrkLsiA~Alig~p~iliLDEPTsGLDp~s 729 (1833)
-. .-.....+.--+++ .+..+...+-++++.| |+|..|..
T Consensus 70 ~~------------------~~~~~~~~~~~~~~--a~~~~~~~~~d~IlID--TaGr~~~~ 109 (211)
T d1j8yf2 70 VY------------------GEPGEKDVVGIAKR--GVEKFLSEKMEIIIVD--TAGRHGYG 109 (211)
T ss_dssp EE------------------CCTTCCCHHHHHHH--HHHHHHHTTCSEEEEE--CCCSCCTT
T ss_pred EE------------------ECCCCHHHHHHHHH--HHHHHHCCCCCEEEEE--CCCCCCCC
T ss_conf 23------------------02441024478999--9987402677369985--37767631
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.25 E-value=0.00045 Score=40.34 Aligned_cols=35 Identities=26% Similarity=0.228 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 88199999599996899999991998899507999
Q 000224 1495 AGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFI 1529 (1833)
Q Consensus 1495 ~Gei~gllG~NGAGKTTll~~l~G~~~p~~G~i~i 1529 (1833)
+|.+..|+|+.|+||||+++.|.|......|.|.-
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~ 130 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 130 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCC
T ss_conf 35649998778734878987515176764035553
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.18 E-value=0.0027 Score=35.13 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=29.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 78099994699997579999880999999515999
Q 000224 588 ENQILALLGHNGAGKSTTISMLVGLIPPTTGDALV 622 (1833)
Q Consensus 588 ~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i 622 (1833)
+|++++++|++|+|||||+|.|.|-..--.|.+.-
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~ 128 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 128 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCCC
T ss_conf 69808997889877888877305355501068420
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.16 E-value=0.012 Score=30.64 Aligned_cols=27 Identities=26% Similarity=0.164 Sum_probs=13.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 199999599996899999991998899
Q 000224 1497 ECFGFLGTNGAGKTTTLSMISGEEYPT 1523 (1833)
Q Consensus 1497 ei~gllG~NGAGKTTll~~l~G~~~p~ 1523 (1833)
.-+-+.|+-|+||||+++.|.+.++|.
T Consensus 167 ~nili~G~tgSGKTT~l~al~~~i~~~ 193 (323)
T d1g6oa_ 167 KNVIVCGGTGSGKTTYIKSIMEFIPKE 193 (323)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred CCEEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 888999403566257899986530145
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.12 E-value=9.6e-05 Score=44.89 Aligned_cols=35 Identities=37% Similarity=0.461 Sum_probs=29.1
Q ss_pred CEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 013235888478099994699997579999880999
Q 000224 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLI 613 (1833)
Q Consensus 578 av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~ 613 (1833)
..++.++++.+| +++|+|+|||||||++..|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 870279974998-08998899998799999999996
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=96.02 E-value=0.014 Score=30.25 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=22.4
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCC-EEEECCC
Q ss_conf 8847809999469999757999988099999951-5999671
Q 000224 585 TLYENQILALLGHNGAGKSTTISMLVGLIPPTTG-DALVFGK 625 (1833)
Q Consensus 585 ~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG-~v~i~G~ 625 (1833)
.++.|.|+-+-|+.|+||||+.-.++....-..| -++|+..
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE 94 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 94 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 866754789805876522799999999997079989999887
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.93 E-value=0.024 Score=28.58 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=11.8
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9994699997579999880999
Q 000224 592 LALLGHNGAGKSTTISMLVGLI 613 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~Gl~ 613 (1833)
+.|.||.|+|||++.+.++..+
T Consensus 48 iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 48 VLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCHHHHHHHHHC
T ss_conf 7866899888228999999982
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.93 E-value=0.018 Score=29.51 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=27.3
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHH
Q ss_conf 69998999387899899999999999999874169969999637788
Q 000224 1618 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMN 1664 (1833)
Q Consensus 1618 ~~p~illLDEPt~GlDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~ 1664 (1833)
+..+++++||.-. |...+...+++.+.+.. ..+.+|++|++.+
T Consensus 130 ~~~~iiiide~d~-l~~~~~~~l~~~~e~~~---~~~~~Il~tn~~~ 172 (252)
T d1sxje2 130 HRYKCVIINEANS-LTKDAQAALRRTMEKYS---KNIRLIMVCDSMS 172 (252)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHST---TTEEEEEEESCSC
T ss_pred CCCEEEEECCCCC-CCCCCCHHHHCCCCCCC---CCCCCEEEECCCC
T ss_conf 8724999424333-45431112210022135---6643000102111
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.93 E-value=0.0017 Score=36.45 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=19.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 81999995999968999999919988
Q 000224 1496 GECFGFLGTNGAGKTTTLSMISGEEY 1521 (1833)
Q Consensus 1496 Gei~gllG~NGAGKTTll~~l~G~~~ 1521 (1833)
|.++.|.||+||||||+++.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.70 E-value=0.0039 Score=34.01 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=24.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCCCC
Q ss_conf 809999469999757999988099999
Q 000224 589 NQILALLGHNGAGKSTTISMLVGLIPP 615 (1833)
Q Consensus 589 Gei~~LLG~NGAGKSTll~iL~Gl~~p 615 (1833)
|.+++|+||+||||||+++.|....+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.69 E-value=0.04 Score=27.13 Aligned_cols=158 Identities=15% Similarity=0.068 Sum_probs=72.3
Q ss_pred CCEEEEEE-EEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCEEEECCCCCCCCCCCHHH
Q ss_conf 10132358-88478099994699997579999880999999515999671278217886044699826898899999999
Q 000224 577 CAVNSLQL-TLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVRE 655 (1833)
Q Consensus 577 ~av~~lsl-~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~di~~~~~~~r~~iG~cpQ~~~L~~~LTv~E 655 (1833)
..||.+-- .+++|+++.+.|+.|+||||+..-++--..-..+.+. -++. +.+..+
T Consensus 13 ~~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~-----------------~is~-------e~~~~~ 68 (242)
T d1tf7a2 13 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAI-----------------LFAY-------EESRAQ 68 (242)
T ss_dssp HHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEE-----------------EEES-------SSCHHH
T ss_pred HHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCC-----------------EEEC-------CCCHHH
T ss_conf 7798845689869849999918999999999999999987232441-----------------1212-------679999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC---CHHHHHH
Q ss_conf 9999999609997889999999999839983006323788956899999999971899499982888999---9999999
Q 000224 656 HLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGM---DPYSMRL 732 (1833)
Q Consensus 656 hL~~~~~lkg~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSGG~KrkLsiA~Alig~p~iliLDEPTsGL---Dp~srr~ 732 (1833)
..+. +.-.+.+..+. . ..+.....+...........-..-....--.+|++++.|--++-+ ++...+.
T Consensus 69 ~~~~-~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~ 139 (242)
T d1tf7a2 69 LLRN-AYSWGMDFEEM-------E-RQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQ 139 (242)
T ss_dssp HHHH-HHTTSCCHHHH-------H-HTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHH
T ss_pred HHHH-HHHCCCCHHHH-------H-HCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCHHHHHH
T ss_conf 9999-99829986998-------5-4586179973000101799999999999840885332204314304899999999
Q ss_pred HH-HHHHHHH-CCCEEEEECCCHH----------HHHHHCCEEEEEE
Q ss_conf 99-9999983-8969999707977----------9985338999960
Q 000224 733 TW-QLIKKIK-KGRIILLTTHSMD----------EAEELGDRIAIMA 767 (1833)
Q Consensus 733 iw-~~l~~~~-~grtiiltTH~md----------Ead~l~DrI~Il~ 767 (1833)
.. .+.+..+ .+.+++++.|.-. ....++|-+..+.
T Consensus 140 ~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 140 FVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEE
T ss_conf 99999999998698399998567512554457764046421699999
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.42 E-value=0.0043 Score=33.72 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=29.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 88199999599996899999991998899507999685089996876044299805898798999999999999970999
Q 000224 1495 AGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVA 1574 (1833)
Q Consensus 1495 ~Gei~gllG~NGAGKTTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~ig~~pQ~~~l~~~ltv~e~l~~~~~l~g~~ 1574 (1833)
++.++.|+||+|+|||||+-=|+..+.- ..++++.+.-+. ...-+.|.|+.|+++-+++
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~------------------~g~kV~lit~Dt---~R~gA~eQL~~~a~~l~i~ 63 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQN------------------LGKKVMFCAGDT---FRAAGGTQLSEWGKRLSIP 63 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT------------------TTCCEEEECCCC---SSTTHHHHHHHHHHHHTCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH------------------CCCCEEEEEECC---CCCCCHHHHHHCCCCCCCE
T ss_conf 9779999899999889999999999997------------------799079998136---6654026676405456823
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.41 E-value=0.046 Score=26.76 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 81999995999968999999919988
Q 000224 1496 GECFGFLGTNGAGKTTTLSMISGEEY 1521 (1833)
Q Consensus 1496 Gei~gllG~NGAGKTTll~~l~G~~~ 1521 (1833)
...+-|.||.|+|||++.+.|+....
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 88678668998882289999999829
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.36 E-value=0.00023 Score=42.28 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=29.8
Q ss_pred EEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1333359975881999995999968999999919988
Q 000224 1485 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY 1521 (1833)
Q Consensus 1485 av~~is~~v~~Gei~gllG~NGAGKTTll~~l~G~~~ 1521 (1833)
..++.++.+.+| +..|.|+|||||||++..|.-.+.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L~ 49 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI 49 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 870279974998-089988999987999999999966
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.28 E-value=0.0026 Score=35.22 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=16.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999968999999919988
Q 000224 1498 CFGFLGTNGAGKTTTLSMISGEEY 1521 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G~~~ 1521 (1833)
++++.|++||||||+++.|...+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899989999999999999
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.24 E-value=0.0023 Score=35.59 Aligned_cols=35 Identities=17% Similarity=0.305 Sum_probs=30.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 78099994699997579999880999999515999
Q 000224 588 ENQILALLGHNGAGKSTTISMLVGLIPPTTGDALV 622 (1833)
Q Consensus 588 ~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i 622 (1833)
+|++++|+|++|+||||++|.|.|...--.|.|.-
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~ 130 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 130 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCC
T ss_conf 35649998778734878987515176764035553
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.23 E-value=0.057 Score=26.11 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=16.0
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 478099994699997579999880
Q 000224 587 YENQILALLGHNGAGKSTTISMLV 610 (1833)
Q Consensus 587 ~~Gei~~LLG~NGAGKSTll~iL~ 610 (1833)
.+|+++.|.|+.|+||||++--|+
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 589589999289998999999999
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.22 E-value=0.023 Score=28.73 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=25.3
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCCE-EEECCCC
Q ss_conf 88478099994699997579999880999999515-9996712
Q 000224 585 TLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD-ALVFGKN 626 (1833)
Q Consensus 585 ~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~-v~i~G~d 626 (1833)
.++.|.++-+.||+|+||||+.-.++.......|. ++|+...
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~ 98 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH 98 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 8666336999648874889999999998754898899998976
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.21 E-value=0.0022 Score=35.64 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999946999975799998809999
Q 000224 591 ILALLGHNGAGKSTTISMLVGLIP 614 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~Gl~~ 614 (1833)
++++.|++||||||+++-|...+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899989999999999999
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.19 E-value=0.0069 Score=32.31 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=15.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8819999959999689999999199
Q 000224 1495 AGECFGFLGTNGAGKTTTLSMISGE 1519 (1833)
Q Consensus 1495 ~Gei~gllG~NGAGKTTll~~l~G~ 1519 (1833)
+|.++.|.||.|+||||+++.|.-.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9809999999999999999999863
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.18 E-value=0.05 Score=26.49 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=34.3
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHH
Q ss_conf 189949998288899999999999999999838969999707977
Q 000224 710 IGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMD 754 (1833)
Q Consensus 710 ig~p~iliLDEPTsGLDp~srr~iw~~l~~~~~grtiiltTH~md 754 (1833)
.+..+++++||.-. |...+...+..++........+|++|++.+
T Consensus 129 ~~~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~ 172 (252)
T d1sxje2 129 AHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMS 172 (252)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCC
T ss_conf 78724999424333-454311122100221356643000102111
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.12 E-value=0.0083 Score=31.78 Aligned_cols=59 Identities=20% Similarity=0.286 Sum_probs=40.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 78099994699997579999880999999515999671278217886044699826898899999999999999960999
Q 000224 588 ENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK 667 (1833)
Q Consensus 588 ~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~di~~~~~~~r~~iG~cpQ~~~L~~~LTv~EhL~~~~~lkg~~ 667 (1833)
++.+++|+||+|+|||||+-=|+-.+.- . .+.++++-=... ..-..|.|+.|+++-+++
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~-~-----------------g~kV~lit~Dt~---R~gA~eQL~~~a~~l~i~ 63 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQN-L-----------------GKKVMFCAGDTF---RAAGGTQLSEWGKRLSIP 63 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT-T-----------------TCCEEEECCCCS---STTHHHHHHHHHHHHTCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH-C-----------------CCCEEEEEECCC---CCCCHHHHHHCCCCCCCE
T ss_conf 9779999899999889999999999997-7-----------------990799981366---654026676405456823
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.06 E-value=0.007 Score=32.27 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=14.9
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999946999975799998809
Q 000224 591 ILALLGHNGAGKSTTISMLVG 611 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~G 611 (1833)
|++++||-||||||+++-|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899991899839999999999
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.06 E-value=0.058 Score=26.06 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=13.5
Q ss_pred EECCCEEEEECCCCCCHHHHHH
Q ss_conf 7588199999599996899999
Q 000224 1493 VQAGECFGFLGTNGAGKTTTLS 1514 (1833)
Q Consensus 1493 v~~Gei~gllG~NGAGKTTll~ 1514 (1833)
+++|+++-+.|+.|+|||++..
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~ 44 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSI 44 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHH
T ss_conf 9698399999479999999999
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.05 E-value=0.026 Score=28.45 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 99946999975799998809999
Q 000224 592 LALLGHNGAGKSTTISMLVGLIP 614 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~Gl~~ 614 (1833)
+-|.||.|+|||++.+.+++.+.
T Consensus 44 iLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 44 VLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp EEEBCCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCHHHHHHHHHHHC
T ss_conf 78878998763047788787718
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.01 E-value=0.012 Score=30.75 Aligned_cols=159 Identities=19% Similarity=0.112 Sum_probs=73.4
Q ss_pred CCEEEEEE-EEECCEEEEEECCCCCCHHHHHH-HHCCCCCCCCCEEEECCCCCCCCHHHHHCCEEEECCCCCCCCCCCHH
Q ss_conf 10132358-88478099994699997579999-88099999951599967127821788604469982689889999999
Q 000224 577 CAVNSLQL-TLYENQILALLGHNGAGKSTTIS-MLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVR 654 (1833)
Q Consensus 577 ~av~~lsl-~i~~Gei~~LLG~NGAGKSTll~-iL~Gl~~ptsG~v~i~G~di~~~~~~~r~~iG~cpQ~~~L~~~LTv~ 654 (1833)
..||++-- .+++|+++.+.|+.|+||||+.- ++......-...+. |+. .+.+..
T Consensus 13 ~~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~------------------~~s------~e~~~~ 68 (242)
T d1tf7a1 13 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGV------------------FVT------FEETPQ 68 (242)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEE------------------EEE------SSSCHH
T ss_pred HHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCC------------------CCC------CCCCHH
T ss_conf 77988556899698399999479999999999999999985688742------------------012------667999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC----CCCCCCCCCHHHHHHH-HHHHHH--HCCCCEEEEECCCCCC--
Q ss_conf 999999996099978899999999998399830----0632378895689999-999997--1899499982888999--
Q 000224 655 EHLEMFAVLKGVKEELLESVVAEMVDEVGLADK----VNIVVRALSGGMKRKL-SLGIAL--IGDSKVVILDEPTSGM-- 725 (1833)
Q Consensus 655 EhL~~~~~lkg~~~~~~~~~v~~~l~~l~L~~~----~~~~~~~LSGG~KrkL-siA~Al--ig~p~iliLDEPTsGL-- 725 (1833)
+...... ..+..... .......... ...............+ .-..+. -.+|+++++|--+.-+
T Consensus 69 ~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~ 140 (242)
T d1tf7a1 69 DIIKNAR-SFGWDLAK-------LVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ 140 (242)
T ss_dssp HHHHHHG-GGTCCHHH-------HHHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT
T ss_pred HHHHHHH-HCCCCHHH-------HHHHCCHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999999-84998489-------887143024442103354444302458999999999988631222002078899876
Q ss_pred --C-HHHHHHHHHHHHHHH-CCCEEEEECCCHHH---------HHHHCCEEEEEE
Q ss_conf --9-999999999999983-89699997079779---------985338999960
Q 000224 726 --D-PYSMRLTWQLIKKIK-KGRIILLTTHSMDE---------AEELGDRIAIMA 767 (1833)
Q Consensus 726 --D-p~srr~iw~~l~~~~-~grtiiltTH~mdE---------ad~l~DrI~Il~ 767 (1833)
+ ...++.+..+++..+ .+.+++++.|..++ ...++|.+..+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 141 YDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf 0572678999999999998639716884210255422246762335362999988
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=94.96 E-value=0.0082 Score=31.81 Aligned_cols=24 Identities=21% Similarity=0.461 Sum_probs=12.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 881999995999968999999919
Q 000224 1495 AGECFGFLGTNGAGKTTTLSMISG 1518 (1833)
Q Consensus 1495 ~Gei~gllG~NGAGKTTll~~l~G 1518 (1833)
.+.++.|.||.||||||+.+.|+.
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~ 28 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAH 28 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 871899989999898999999999
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.91 E-value=0.069 Score=25.53 Aligned_cols=46 Identities=11% Similarity=0.074 Sum_probs=30.1
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHH
Q ss_conf 699989993878998999999999999998741699699996377888997
Q 000224 1618 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQA 1668 (1833)
Q Consensus 1618 ~~p~illLDEPt~GlDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~ 1668 (1833)
..-..+++| .+..+...|+.+.++.++.. . ...++....+.+.+.+
T Consensus 63 ~~g~~vIiD--~t~~~~~~R~~~~~~a~~~~--~-~~~~v~l~~~~e~~~~ 108 (172)
T d1yj5a2 63 RQGKRVVID--NTNPDVPSRARYIQCAKDAG--V-PCRCFNFCATIEQARH 108 (172)
T ss_dssp HTTCCEEEE--SCCCSHHHHHHHHHHHHHHT--C-CEEEEEECCCHHHHHH
T ss_pred HCCCCCEEE--CCCCCHHHHHHHHHHHHHCC--C-CEEEEEECCCHHHHHH
T ss_conf 779995551--76799999999999998558--8-8799994899999999
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.87 E-value=0.011 Score=30.88 Aligned_cols=25 Identities=48% Similarity=0.636 Sum_probs=13.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8099994699997579999880999
Q 000224 589 NQILALLGHNGAGKSTTISMLVGLI 613 (1833)
Q Consensus 589 Gei~~LLG~NGAGKSTll~iL~Gl~ 613 (1833)
|++..|.|+.||||||+.+.|+..+
T Consensus 4 g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 4 GNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8599998899998899999999995
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.82 E-value=0.016 Score=29.82 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=9.7
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99995999968999999919
Q 000224 1499 FGFLGTNGAGKTTTLSMISG 1518 (1833)
Q Consensus 1499 ~gllG~NGAGKTTll~~l~G 1518 (1833)
+|++|+-|+||||+++.|+|
T Consensus 11 V~iiG~~~~GKSTLin~l~~ 30 (186)
T d1mkya2 11 VAIVGRPNVGKSTLFNAILN 30 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999999999999977
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.81 E-value=0.0046 Score=33.53 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999959999689999999199889
Q 000224 1498 CFGFLGTNGAGKTTTLSMISGEEYP 1522 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G~~~p 1522 (1833)
++|+.|++||||||+++-|...+..
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9999809999899999999999986
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=94.76 E-value=0.01 Score=31.08 Aligned_cols=27 Identities=30% Similarity=0.503 Sum_probs=23.7
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 478099994699997579999880999
Q 000224 587 YENQILALLGHNGAGKSTTISMLVGLI 613 (1833)
Q Consensus 587 ~~Gei~~LLG~NGAGKSTll~iL~Gl~ 613 (1833)
..+.|+.|.|+.||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.75 E-value=0.0024 Score=35.43 Aligned_cols=36 Identities=22% Similarity=0.104 Sum_probs=26.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEE
Q ss_conf 999995999968999999919988995079996850
Q 000224 1498 CFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKD 1533 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G~~~p~~G~i~i~G~~ 1533 (1833)
++.|.||+|+||||+++.+...+....+.+.+.+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~ 38 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTE 38 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 999988999719999999999999779979999845
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=94.70 E-value=0.0075 Score=32.07 Aligned_cols=21 Identities=38% Similarity=0.583 Sum_probs=10.5
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999469999757999988099
Q 000224 592 LALLGHNGAGKSTTISMLVGL 612 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~Gl 612 (1833)
++|+|+-||||||+++.|+|.
T Consensus 26 I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 26 IALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHCCC
T ss_conf 999899998799999985298
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.67 E-value=0.056 Score=26.15 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=11.5
Q ss_pred EEECCCCCCHHHHHHHHCCC
Q ss_conf 99469999757999988099
Q 000224 593 ALLGHNGAGKSTTISMLVGL 612 (1833)
Q Consensus 593 ~LLG~NGAGKSTll~iL~Gl 612 (1833)
.|.||-|+|||++.+.++..
T Consensus 46 Ll~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 46 LLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp EEECCTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
T ss_conf 87668988835999999987
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=94.58 E-value=0.0086 Score=31.66 Aligned_cols=110 Identities=19% Similarity=0.186 Sum_probs=60.1
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 88847809999469999757999988099999951599967127821788604469982689889999999999999996
Q 000224 584 LTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVL 663 (1833)
Q Consensus 584 l~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~di~~~~~~~r~~iG~cpQ~~~L~~~LTv~EhL~~~~~l 663 (1833)
+.-.+-.+++|+||+|+|||||+-=|+-.+. .-.+.++++-=... ..-..|.|.-|+++
T Consensus 6 ~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~------------------~~~~kV~lit~Dt~---R~gA~eQL~~~a~~ 64 (213)
T d1vmaa2 6 VPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV------------------DEGKSVVLAAADTF---RAAAIEQLKIWGER 64 (213)
T ss_dssp CCSSSCEEEEEECCTTSSHHHHHHHHHHHHH------------------HTTCCEEEEEECTT---CHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHH------------------HCCCCEEEEEECCC---CCCHHHHHHHHHHH
T ss_conf 7999998999989999988999999999999------------------77990699960133---42046788877643
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 0999788999999999983998300632378895689999999997189949998288899999999999999
Q 000224 664 KGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQL 736 (1833)
Q Consensus 664 kg~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSGG~KrkLsiA~Alig~p~iliLDEPTsGLDp~srr~iw~~ 736 (1833)
-+++- ........+ -.-.+...+.+...+-++++.| |+|..|.....+-++
T Consensus 65 l~i~~------------------~~~~~~~d~--~~~~~~~~~~~~~~~~d~ilID--TaGr~~~d~~~~~el 115 (213)
T d1vmaa2 65 VGATV------------------ISHSEGADP--AAVAFDAVAHALARNKDVVIID--TAGRLHTKKNLMEEL 115 (213)
T ss_dssp HTCEE------------------ECCSTTCCH--HHHHHHHHHHHHHTTCSEEEEE--ECCCCSCHHHHHHHH
T ss_pred CCCCC------------------CCCCCCCCH--HHHHHHHHHHHHHCCCCEEEEE--CCCCCCCHHHHHHHH
T ss_conf 27641------------------036777768--9987887899987699989982--455330168888998
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.53 E-value=0.015 Score=30.04 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=23.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 780999946999975799998809999
Q 000224 588 ENQILALLGHNGAGKSTTISMLVGLIP 614 (1833)
Q Consensus 588 ~Gei~~LLG~NGAGKSTll~iL~Gl~~ 614 (1833)
+|.+++|+||+|+||||+++.|.-..|
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.47 E-value=0.021 Score=29.08 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=27.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 8819999959999689999999199889950799968
Q 000224 1495 AGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFG 1531 (1833)
Q Consensus 1495 ~Gei~gllG~NGAGKTTll~~l~G~~~p~~G~i~i~G 1531 (1833)
.|+++.|.||.||||||+.+.|...+... -+.+++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~--~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGVP--KVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSC--EEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCC--EEEECH
T ss_conf 98599998899998899999999995999--799068
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.43 E-value=0.015 Score=29.99 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=14.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 819999959999689999999199
Q 000224 1496 GECFGFLGTNGAGKTTTLSMISGE 1519 (1833)
Q Consensus 1496 Gei~gllG~NGAGKTTll~~l~G~ 1519 (1833)
..++.|+||||+||||++-=|+..
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~ 33 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALY 33 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 868999899999889999999999
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=94.30 E-value=0.016 Score=29.92 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999689999999199
Q 000224 1498 CFGFLGTNGAGKTTTLSMISGE 1519 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G~ 1519 (1833)
+++++|+-||||||+++-|...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999918998399999999998
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=94.21 E-value=0.1 Score=24.45 Aligned_cols=42 Identities=29% Similarity=0.385 Sum_probs=31.6
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEE-EEECCEE
Q ss_conf 97588199999599996899999991998899507-9996850
Q 000224 1492 SVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT-AFIFGKD 1533 (1833)
Q Consensus 1492 ~v~~Gei~gllG~NGAGKTTll~~l~G~~~p~~G~-i~i~G~~ 1533 (1833)
.++.|.++-+-||.|+||||+.-.++....-..|. ++++.+.
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~ 95 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 95 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 8667547898058765227999999999970799899998876
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=94.20 E-value=0.012 Score=30.62 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=11.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999968999999919
Q 000224 1498 CFGFLGTNGAGKTTTLSMISG 1518 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G 1518 (1833)
++.|+||||+||||++-=|+.
T Consensus 11 vi~lvGptGvGKTTTiAKLA~ 31 (211)
T d2qy9a2 11 VILMVGVNGVGKTTTIGKLAR 31 (211)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989999998999999999
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.19 E-value=0.017 Score=29.69 Aligned_cols=103 Identities=18% Similarity=0.165 Sum_probs=54.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 78099994699997579999880999999515999671278217886044699826898899999999999999960999
Q 000224 588 ENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK 667 (1833)
Q Consensus 588 ~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~di~~~~~~~r~~iG~cpQ~~~L~~~LTv~EhL~~~~~lkg~~ 667 (1833)
+..++.|+||+|+||||++-=|+-.+. .. .++++++.=... ..-..|.|.-|+++-+++
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~-~~-----------------g~kV~lit~Dt~---R~gA~eQL~~~a~~l~v~ 67 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYYK-GK-----------------GRRPLLVAADTQ---RPAAREQLRLLGEKVGVP 67 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH-HT-----------------TCCEEEEECCSS---CHHHHHHHHHHHHHHTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-HC-----------------CCCEEEEECCCC---CCHHHHHHHHHHHHCCCC
T ss_conf 986899989999988999999999999-77-----------------992799954434---640888899999862886
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 788999999999983998300632378895689999999997189949998288899999999999
Q 000224 668 EELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLT 733 (1833)
Q Consensus 668 ~~~~~~~v~~~l~~l~L~~~~~~~~~~LSGG~KrkLsiA~Alig~p~iliLDEPTsGLDp~srr~i 733 (1833)
- ..-.....+ -.-.+-....+...+-++++.| |+|..+.....+
T Consensus 68 ~------------------~~~~~~~~~--~~~~~~~~~~~~~~~~d~vlID--TaGr~~~d~~~~ 111 (207)
T d1ls1a2 68 V------------------LEVMDGESP--ESIRRRVEEKARLEARDLILVD--TAGRLQIDEPLM 111 (207)
T ss_dssp E------------------EECCTTCCH--HHHHHHHHHHHHHHTCCEEEEE--CCCCSSCCHHHH
T ss_pred C------------------CCCCCCCHH--HHHHHHHHHHHHHCCCCCEEEC--CCCCCHHHHHHH
T ss_conf 3------------------111244203--6788889888763367640334--544200003668
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=94.00 E-value=0.0098 Score=31.27 Aligned_cols=101 Identities=19% Similarity=0.203 Sum_probs=54.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCH
Q ss_conf 80999946999975799998809999995159996712782178860446998268988999999999999999609997
Q 000224 589 NQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKE 668 (1833)
Q Consensus 589 Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~di~~~~~~~r~~iG~cpQ~~~L~~~LTv~EhL~~~~~lkg~~~ 668 (1833)
-.|++|+||+|+||||++-=|+-.+. .. .+.++++.=+.. ..-..|.|+.|+++-+++-
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~-~~-----------------g~kV~lit~Dt~---R~gA~eQL~~~a~~l~v~~ 67 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFE-QQ-----------------GKSVMLAAGDTF---RAAAVEQLQVWGQRNNIPV 67 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHH-TT-----------------TCCEEEECCCTT---CHHHHHHHHHHHHHTTCCE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH-HC-----------------CCCEEEEECCCC---CCCCHHHHHHHHHHCCCCC
T ss_conf 97999989999998999999999999-77-----------------994799823213---6661204555434338862
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHH
Q ss_conf 8899999999998399830063237889568999999999718994999828889999999999
Q 000224 669 ELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRL 732 (1833)
Q Consensus 669 ~~~~~~v~~~l~~l~L~~~~~~~~~~LSGG~KrkLsiA~Alig~p~iliLDEPTsGLDp~srr~ 732 (1833)
.. ......+..=.++ .+.-|-..+-++++.| |+|.-+.....
T Consensus 68 ~~------------------~~~~~d~~~~l~~--~~~~a~~~~~d~ilID--TaGr~~~d~~~ 109 (211)
T d2qy9a2 68 IA------------------QHTGADSASVIFD--AIQAAKARNIDVLIAD--TAGRLQNKSHL 109 (211)
T ss_dssp EC------------------CSTTCCHHHHHHH--HHHHHHHTTCSEEEEC--CCCCGGGHHHH
T ss_pred CC------------------CCCCCCHHHHHHH--HHHHHHHCCCCEEEEC--CCCCCCCCHHH
T ss_conf 11------------------3568779999999--9999987699889965--68876320778
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.00 E-value=0.004 Score=33.92 Aligned_cols=37 Identities=22% Similarity=0.165 Sum_probs=29.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCC
Q ss_conf 9999469999757999988099999951599967127
Q 000224 591 ILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI 627 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~di 627 (1833)
.+.|.|++|+||||+++.+...+....+.+.+.+.+.
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~ 39 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEE 39 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 9999889997199999999999997799799998455
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=93.97 E-value=0.013 Score=30.56 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=14.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999469999757999988099
Q 000224 591 ILALLGHNGAGKSTTISMLVGL 612 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~Gl 612 (1833)
-++++|+-|+||||+++.|+|.
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999899999899999999688
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.95 E-value=0.0076 Score=32.01 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=22.1
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCCCCC
Q ss_conf 099994699997579999880999999
Q 000224 590 QILALLGHNGAGKSTTISMLVGLIPPT 616 (1833)
Q Consensus 590 ei~~LLG~NGAGKSTll~iL~Gl~~pt 616 (1833)
.|+++.|.+||||||+++-|...+..-
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 099998099998999999999999867
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=93.94 E-value=0.11 Score=24.11 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99995999968999999919988
Q 000224 1499 FGFLGTNGAGKTTTLSMISGEEY 1521 (1833)
Q Consensus 1499 ~gllG~NGAGKTTll~~l~G~~~ 1521 (1833)
+-|.||-|+|||++.+.++....
T Consensus 45 iLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 88766898883599999998739
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=93.93 E-value=0.11 Score=24.09 Aligned_cols=41 Identities=10% Similarity=0.122 Sum_probs=22.8
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHH
Q ss_conf 998999387899899999999999999874169969999637788
Q 000224 1620 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMN 1664 (1833)
Q Consensus 1620 p~illLDEPt~GlDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~ 1664 (1833)
.+++++||.- +|++.+...+...+.+.. ..+.+|++|++.+
T Consensus 116 ~kviiIde~d-~l~~~~q~~Llk~lE~~~---~~~~~il~tn~~~ 156 (239)
T d1njfa_ 116 FKVYLIDEVH-MLSRHSFNALLKTLEEPP---EHVKFLLATTDPQ 156 (239)
T ss_dssp SEEEEEETGG-GSCHHHHHHHHHHHHSCC---TTEEEEEEESCGG
T ss_pred CEEEEEECCC-CCCHHHHHHHHHHHHCCC---CCEEEEEECCCCC
T ss_conf 8799997811-089999999999985689---8869999738856
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.79 E-value=0.048 Score=26.60 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99994699997579999880999
Q 000224 591 ILALLGHNGAGKSTTISMLVGLI 613 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~Gl~ 613 (1833)
-++++|+.|+||||+++.|+|.-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999997787
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.72 E-value=0.043 Score=26.94 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 81999995999968999999919988
Q 000224 1496 GECFGFLGTNGAGKTTTLSMISGEEY 1521 (1833)
Q Consensus 1496 Gei~gllG~NGAGKTTll~~l~G~~~ 1521 (1833)
..-+-|.||.|.|||++.+.+++...
T Consensus 41 ~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 41 SKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 87578878998763047788787718
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.63 E-value=0.024 Score=28.62 Aligned_cols=24 Identities=17% Similarity=0.433 Sum_probs=15.3
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099994699997579999880999
Q 000224 590 QILALLGHNGAGKSTTISMLVGLI 613 (1833)
Q Consensus 590 ei~~LLG~NGAGKSTll~iL~Gl~ 613 (1833)
.+.++.|+.||||||+.+.|+-.+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l 25 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNL 25 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 889998999989899999999999
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.63 E-value=0.026 Score=28.38 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=12.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 78099994699997579999880
Q 000224 588 ENQILALLGHNGAGKSTTISMLV 610 (1833)
Q Consensus 588 ~Gei~~LLG~NGAGKSTll~iL~ 610 (1833)
+|.++.|.|..||||||+-+.|+
T Consensus 5 ~g~~I~l~G~~GsGKTTia~~La 27 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDAIARALQ 27 (183)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
T ss_conf 97699988999999999999999
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=93.61 E-value=0.019 Score=29.29 Aligned_cols=23 Identities=13% Similarity=0.335 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599996899999991998
Q 000224 1498 CFGFLGTNGAGKTTTLSMISGEE 1520 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G~~ 1520 (1833)
.++|+|+-||||||+++.|+|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.46 E-value=0.026 Score=28.46 Aligned_cols=21 Identities=38% Similarity=0.681 Sum_probs=13.2
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999469999757999988099
Q 000224 592 LALLGHNGAGKSTTISMLVGL 612 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~Gl 612 (1833)
++++|+.|+||||++|.|+|.
T Consensus 8 I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 8 IAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEECSSSSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999979999899999999589
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.44 E-value=0.026 Score=28.36 Aligned_cols=22 Identities=36% Similarity=0.690 Sum_probs=15.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999469999757999988099
Q 000224 591 ILALLGHNGAGKSTTISMLVGL 612 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~Gl 612 (1833)
+++++|+.|+||||+++.|+|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999999999688
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.27 E-value=0.015 Score=30.00 Aligned_cols=26 Identities=35% Similarity=0.385 Sum_probs=21.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 80999946999975799998809999
Q 000224 589 NQILALLGHNGAGKSTTISMLVGLIP 614 (1833)
Q Consensus 589 Gei~~LLG~NGAGKSTll~iL~Gl~~ 614 (1833)
.-+.|+.|+-||||||+++-|+..+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 32897438999989999999999997
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=93.26 E-value=0.035 Score=27.53 Aligned_cols=25 Identities=40% Similarity=0.522 Sum_probs=12.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8819999959999689999999199
Q 000224 1495 AGECFGFLGTNGAGKTTTLSMISGE 1519 (1833)
Q Consensus 1495 ~Gei~gllG~NGAGKTTll~~l~G~ 1519 (1833)
+|-...|.||.||||||+.+.|.-.
T Consensus 4 k~~~I~i~G~~GsGKTT~~~~La~~ 28 (174)
T d1y63a_ 4 KGINILITGTPGTGKTSMAEMIAAE 28 (174)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9888999828999889999999998
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=93.21 E-value=0.032 Score=27.75 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=22.8
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 478099994699997579999880999
Q 000224 587 YENQILALLGHNGAGKSTTISMLVGLI 613 (1833)
Q Consensus 587 ~~Gei~~LLG~NGAGKSTll~iL~Gl~ 613 (1833)
++|-...|.|+.||||||+.+.|+-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 998889998289998899999999985
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=93.02 E-value=0.037 Score=27.40 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=12.4
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099994699997579999880999
Q 000224 590 QILALLGHNGAGKSTTISMLVGLI 613 (1833)
Q Consensus 590 ei~~LLG~NGAGKSTll~iL~Gl~ 613 (1833)
.++.|.|+.||||||+.+.|+..+
T Consensus 4 kiI~l~G~~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 599998999999899999999972
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=93.01 E-value=0.16 Score=23.11 Aligned_cols=153 Identities=10% Similarity=0.058 Sum_probs=75.7
Q ss_pred EEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHCCCEEEEECCCCCCCCCCHHHHH
Q ss_conf 13333599758819999959999689999999199889950799968508999687604429980589879899999999
Q 000224 1485 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHL 1564 (1833)
Q Consensus 1485 av~~is~~v~~Gei~gllG~NGAGKTTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~ig~~pQ~~~l~~~ltv~e~l 1564 (1833)
++++ +.+|++.-|.|+.|+||||+.--|+.-+. +|.- ..|.... ....+-|+..++ +..+..
T Consensus 22 li~G----~~pg~~~~i~G~~G~GKS~l~l~la~~ia--~g~~-~~~~~~~-----~~~~vl~~~~E~------~~~~~~ 83 (274)
T d1nlfa_ 22 VLPN----MVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD-LLEVGEL-----PTGPVIYLPAED------PPTAIH 83 (274)
T ss_dssp EETT----EETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC-TTCCCCC-----CCCCEEEEESSS------CHHHHH
T ss_pred HHCC----CCCCCEEEEEECCCCCHHHHHHHHHHHHH--CCCC-CCCCCCC-----CCCCEEEEECCC------HHHHHH
T ss_conf 8689----55895899992899989999999999997--6997-2111235-----787368985123------499999
Q ss_pred -HHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-----CCCHHHHH
Q ss_conf -999997099905599999999987499620188989989469999999999906999899938789-----98999999
Q 000224 1565 -ELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPST-----GMDPIAKR 1638 (1833)
Q Consensus 1565 -~~~~~l~g~~~~~~~~~v~~~l~~~~L~~~~~~~~~~lSgG~krrl~iA~al~~~p~illLDEPt~-----GlDp~~r~ 1638 (1833)
++.+...+..... .........+.+..+.......- ..+.-....+.+|+++++|--+. --|....+
T Consensus 84 ~Rl~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~ 156 (274)
T d1nlfa_ 84 HRLHALGAHLSAEE----RQAVADGLLIQPLIGSLPNIMAP---EWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMA 156 (274)
T ss_dssp HHHHHHHTTSCHHH----HHHHHHHEEECCCTTSCCCTTSH---HHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred HHHHHHHHCCCHHH----HHCCCCCCEECCCCCCCCHHHHH---HHHHHHHHHCCCCCEEECCCHHHHCCCCCCCHHHHH
T ss_conf 99999862368666----53123332321456742035789---999998875267658962813542266523225689
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCH
Q ss_conf 9999999987416996999963778
Q 000224 1639 FMWEVISRLSTRQGKTAVILTTHSM 1663 (1833)
Q Consensus 1639 ~i~~~i~~l~~~~~~~tiilttH~m 1663 (1833)
.+.+.++.++.+.+ ++|+++.|.-
T Consensus 157 ~~~~~l~~la~~~~-~~vi~v~H~~ 180 (274)
T d1nlfa_ 157 QVIGRMEAIAADTG-CSIVFLHHAS 180 (274)
T ss_dssp HHHHHHHHHHHHHC-CEEEEEEEC-
T ss_pred HHHHHHHHHHHCCC-CCEEHHHHCC
T ss_conf 99988777764479-7540131005
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.96 E-value=0.03 Score=27.98 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=14.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599996899999991998
Q 000224 1499 FGFLGTNGAGKTTTLSMISGEE 1520 (1833)
Q Consensus 1499 ~gllG~NGAGKTTll~~l~G~~ 1520 (1833)
..|+||+||||||+.+.|....
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9998999999899999999748
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.85 E-value=0.038 Score=27.26 Aligned_cols=27 Identities=15% Similarity=0.089 Sum_probs=23.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 588199999599996899999991998
Q 000224 1494 QAGECFGFLGTNGAGKTTTLSMISGEE 1520 (1833)
Q Consensus 1494 ~~Gei~gllG~NGAGKTTll~~l~G~~ 1520 (1833)
.+|-++-|.|+.||||||+-+.|+-.+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.78 E-value=0.039 Score=27.23 Aligned_cols=21 Identities=38% Similarity=0.532 Sum_probs=12.3
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999469999757999988099
Q 000224 592 LALLGHNGAGKSTTISMLVGL 612 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~Gl 612 (1833)
++|+|+.|+||||++|.|+|.
T Consensus 3 I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 3 IIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998899999999689
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.78 E-value=0.041 Score=27.07 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=13.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999689999999199
Q 000224 1498 CFGFLGTNGAGKTTTLSMISGE 1519 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G~ 1519 (1833)
.+.|+||+|+||+|+++-|...
T Consensus 5 ~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 5 TLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
T ss_conf 1999998999999999999970
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.63 E-value=0.036 Score=27.49 Aligned_cols=20 Identities=40% Similarity=0.517 Sum_probs=10.9
Q ss_pred EEECCCCCCHHHHHHHHHCC
Q ss_conf 99959999689999999199
Q 000224 1500 GFLGTNGAGKTTTLSMISGE 1519 (1833)
Q Consensus 1500 gllG~NGAGKTTll~~l~G~ 1519 (1833)
.|.||+|+||||+.+.|.-.
T Consensus 4 vl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 4 VLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEECCTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
T ss_conf 99999999999999999974
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.59 E-value=0.036 Score=27.41 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=12.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999469999757999988099
Q 000224 591 ILALLGHNGAGKSTTISMLVGL 612 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~Gl 612 (1833)
++|+-|+.||||||+.+.|.-.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9997898878999999999998
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.56 E-value=0.13 Score=23.78 Aligned_cols=38 Identities=26% Similarity=0.404 Sum_probs=18.4
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 989993878998999999999999998741699699996377
Q 000224 1621 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHS 1662 (1833)
Q Consensus 1621 ~illLDEPt~GlDp~~r~~i~~~i~~l~~~~~~~tiilttH~ 1662 (1833)
+++++||- ..+.+.....++..|.+.. . .+-++++++.
T Consensus 101 kiiiiDe~-d~~~~~~~~~Ll~~le~~~--~-~~~~~~~~~~ 138 (227)
T d1sxjc2 101 KLIILDEA-DAMTNAAQNALRRVIERYT--K-NTRFCVLANY 138 (227)
T ss_dssp EEEEETTG-GGSCHHHHHHHHHHHHHTT--T-TEEEEEEESC
T ss_pred EEEEEECC-CCCHHHHHHHHHHHHHHCC--C-CEEECCCCCC
T ss_conf 89999663-2000237899998863112--0-0232012670
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=92.55 E-value=0.026 Score=28.43 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=14.8
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999469999757999988099
Q 000224 592 LALLGHNGAGKSTTISMLVGL 612 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~Gl 612 (1833)
+||+|+-++||||++|.|+|-
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899998799999999689
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.54 E-value=0.035 Score=27.55 Aligned_cols=22 Identities=32% Similarity=0.703 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9994699997579999880999
Q 000224 592 LALLGHNGAGKSTTISMLVGLI 613 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~Gl~ 613 (1833)
.+|+|..|+||||++|.|.|.-
T Consensus 35 I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 35 ILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999986999999985898
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=92.47 E-value=0.046 Score=26.73 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=10.9
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999469999757999988099
Q 000224 592 LALLGHNGAGKSTTISMLVGL 612 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~Gl 612 (1833)
++++|+-|+||||+++-|+|.
T Consensus 3 V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 3 VLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999899999999677
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.43 E-value=0.033 Score=27.72 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=20.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 809999469999757999988099
Q 000224 589 NQILALLGHNGAGKSTTISMLVGL 612 (1833)
Q Consensus 589 Gei~~LLG~NGAGKSTll~iL~Gl 612 (1833)
+-+.|++||-+||||||++.|+|.
T Consensus 5 ~p~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 5 SPIVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 987999969985499999999823
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=92.40 E-value=0.053 Score=26.31 Aligned_cols=26 Identities=19% Similarity=0.219 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 19999959999689999999199889
Q 000224 1497 ECFGFLGTNGAGKTTTLSMISGEEYP 1522 (1833)
Q Consensus 1497 ei~gllG~NGAGKTTll~~l~G~~~p 1522 (1833)
.++.+.|+.||||||+.+.|.-.+..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 88999899998989999999999987
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.39 E-value=0.049 Score=26.52 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=17.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 78099994699997579999880999
Q 000224 588 ENQILALLGHNGAGKSTTISMLVGLI 613 (1833)
Q Consensus 588 ~Gei~~LLG~NGAGKSTll~iL~Gl~ 613 (1833)
+|-+.++-|+-||||||.++.|...+
T Consensus 2 rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 2 RGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 80599998998889999999999999
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=92.27 E-value=0.039 Score=27.18 Aligned_cols=122 Identities=20% Similarity=0.178 Sum_probs=70.9
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 58884780999946999975799998809999995159996712782178860446998268988999999999999999
Q 000224 583 QLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAV 662 (1833)
Q Consensus 583 sl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~di~~~~~~~r~~iG~cpQ~~~L~~~LTv~EhL~~~~~ 662 (1833)
..-+..+.-..+.|+-||||||+++.|.+.++|..=-+.|.... +.. +-+..++. .
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd~~------El~----l~~~~~~~--~------------ 215 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE------EIV----FKHHKNYT--Q------------ 215 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC------CCC----CSSCSSEE--E------------
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEECCCHH------HHH----CCCCCCCC--E------------
T ss_conf 99998378889994035662578999865301456233113226------551----11124541--0------------
Q ss_pred HCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 60999788999999999983998300632378895689999999997189949998288899999999999999999838
Q 000224 663 LKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK 742 (1833)
Q Consensus 663 lkg~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSGG~KrkLsiA~Alig~p~iliLDEPTsGLDp~srr~iw~~l~~~~~ 742 (1833)
+... ...+ +.+ .+..||=.+|+.++++|--. +. .|++++....
T Consensus 216 ---------------------~~~~-----~~~~--~~~--ll~~~lR~~pd~iivgEiR~---~e----a~~~l~a~~t 258 (323)
T d1g6oa_ 216 ---------------------LFFG-----GNIT--SAD--CLKSCLRMRPDRIILGELRS---SE----AYDFYNVLCS 258 (323)
T ss_dssp ---------------------EECB-----TTBC--HHH--HHHHHTTSCCSEEEESCCCS---TH----HHHHHHHHHT
T ss_pred ---------------------ECCC-----CCHH--HHH--HHHHHHCCCCCCCCCCCCCC---HH----HHHHHHHHHH
T ss_conf ---------------------0146-----5424--999--99997434998545786674---65----9999999981
Q ss_pred CC-EEEEECCCHHHHHHHCCEEEEE
Q ss_conf 96-9999707977998533899996
Q 000224 743 GR-IILLTTHSMDEAEELGDRIAIM 766 (1833)
Q Consensus 743 gr-tiiltTH~mdEad~l~DrI~Il 766 (1833)
|. .++-|.|--+-.+. -+|++-|
T Consensus 259 Gh~g~~tT~Ha~s~~~a-~~Rl~~l 282 (323)
T d1g6oa_ 259 GHKGTLTTLHAGSSEEA-FIRLANM 282 (323)
T ss_dssp TCSCEEEEECCSSHHHH-HHHHHHH
T ss_pred CCCCEEEEECCCCHHHH-HHHHHHH
T ss_conf 69857998787999999-9999985
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.26 E-value=0.034 Score=27.65 Aligned_cols=24 Identities=38% Similarity=0.429 Sum_probs=16.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999946999975799998809999
Q 000224 591 ILALLGHNGAGKSTTISMLVGLIP 614 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~Gl~~ 614 (1833)
-.+|+|..|+||||+++.|+|-..
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999898999999967887
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=92.26 E-value=0.03 Score=27.96 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=15.0
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999469999757999988099
Q 000224 592 LALLGHNGAGKSTTISMLVGL 612 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~Gl 612 (1833)
+||+|+-++||||+++.|+|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=92.22 E-value=0.051 Score=26.43 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=10.0
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 9999959999689999999
Q 000224 1498 CFGFLGTNGAGKTTTLSMI 1516 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l 1516 (1833)
++.+.|+.||||||+.+-|
T Consensus 4 lIii~G~pGsGKTTla~~L 22 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREF 22 (152)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9999899999999999999
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.15 E-value=0.051 Score=26.42 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999959999689999999199889
Q 000224 1498 CFGFLGTNGAGKTTTLSMISGEEYP 1522 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G~~~p 1522 (1833)
++|+-|+-||||||+.+.|.-.+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997898878999999999998363
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=92.15 E-value=0.059 Score=25.98 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999968999999919988
Q 000224 1498 CFGFLGTNGAGKTTTLSMISGEEY 1521 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G~~~ 1521 (1833)
+++++|+-|+||||+++-|+|...
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~ 25 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999989999999967775
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=92.13 E-value=0.063 Score=25.79 Aligned_cols=26 Identities=15% Similarity=0.117 Sum_probs=23.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 81999995999968999999919988
Q 000224 1496 GECFGFLGTNGAGKTTTLSMISGEEY 1521 (1833)
Q Consensus 1496 Gei~gllG~NGAGKTTll~~l~G~~~ 1521 (1833)
..++.|.|+.||||||+.+.|...+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.10 E-value=0.059 Score=26.00 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599996899999991998
Q 000224 1498 CFGFLGTNGAGKTTTLSMISGEE 1520 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G~~ 1520 (1833)
-++|+|+-|+||||+++.|+|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.05 E-value=0.07 Score=25.50 Aligned_cols=21 Identities=43% Similarity=0.582 Sum_probs=14.9
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999469999757999988099
Q 000224 592 LALLGHNGAGKSTTISMLVGL 612 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~Gl 612 (1833)
.+|+|+.|+||||+++.++|-
T Consensus 3 I~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999999999999589
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.03 E-value=0.051 Score=26.42 Aligned_cols=27 Identities=37% Similarity=0.586 Sum_probs=22.1
Q ss_pred EEEECCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 999469999757999988099999951
Q 000224 592 LALLGHNGAGKSTTISMLVGLIPPTTG 618 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~Gl~~ptsG 618 (1833)
++++|..|+||||++|.|.|.-.-..|
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~~~~~~ 85 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIGNEEEG 85 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCTTSTT
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 999899999789999999588867775
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.99 E-value=0.1 Score=24.38 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=20.6
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHH
Q ss_conf 9998999387899899999999999999874169969999637788
Q 000224 1619 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMN 1664 (1833)
Q Consensus 1619 ~p~illLDEPt~GlDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~ 1664 (1833)
+.+++++||. -.|.+.+...+.+.+.+-. .++-+|++|++..
T Consensus 108 ~~kviIide~-d~l~~~a~n~Llk~lEep~---~~~~fIl~t~~~~ 149 (207)
T d1a5ta2 108 GAKVVWVTDA-ALLTDAAANALLKTLEEPP---AETWFFLATREPE 149 (207)
T ss_dssp SCEEEEESCG-GGBCHHHHHHHHHHHTSCC---TTEEEEEEESCGG
T ss_pred CCCEEEECHH-HHHHHHHHHHHHHHHHHHC---CCCEEEEEECCHH
T ss_conf 6404773134-4200001499999998501---1110455306865
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.98 E-value=0.054 Score=26.28 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 99946999975799998809999
Q 000224 592 LALLGHNGAGKSTTISMLVGLIP 614 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~Gl~~ 614 (1833)
.+|+||+||||+|+++.|.-..+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=91.96 E-value=0.044 Score=26.86 Aligned_cols=24 Identities=42% Similarity=0.624 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999968999999919988
Q 000224 1498 CFGFLGTNGAGKTTTLSMISGEEY 1521 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G~~~ 1521 (1833)
.+.|+|+.||||||+++.+++...
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999898999999967887
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.83 E-value=0.055 Score=26.18 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=12.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999689999999199
Q 000224 1498 CFGFLGTNGAGKTTTLSMISGE 1519 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G~ 1519 (1833)
++|+-|+-||||||+-+.|.-.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899978799999999999
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=91.76 E-value=0.05 Score=26.50 Aligned_cols=23 Identities=30% Similarity=0.561 Sum_probs=15.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99994699997579999880999
Q 000224 591 ILALLGHNGAGKSTTISMLVGLI 613 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~Gl~ 613 (1833)
..++.|+.|+||||+.+.|+-.+
T Consensus 9 ~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 9 TVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998999998999999999984
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.75 E-value=0.044 Score=26.86 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99994699997579999880999
Q 000224 591 ILALLGHNGAGKSTTISMLVGLI 613 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~Gl~ 613 (1833)
.++|+|+-|||||||++-|+|--
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=91.69 E-value=0.053 Score=26.29 Aligned_cols=20 Identities=45% Similarity=0.499 Sum_probs=9.4
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99946999975799998809
Q 000224 592 LALLGHNGAGKSTTISMLVG 611 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~G 611 (1833)
..|.|+.||||||+.+.|+-
T Consensus 5 I~l~G~~GsGKSTvak~La~ 24 (169)
T d1kaga_ 5 IFLVGPMGAGKSTIGRQLAQ 24 (169)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99989999999999999999
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=91.65 E-value=0.063 Score=25.80 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=12.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99994699997579999880999
Q 000224 591 ILALLGHNGAGKSTTISMLVGLI 613 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~Gl~ 613 (1833)
+..|.|+.||||||+.+.|+..+
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 89998999999899999999980
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.64 E-value=0.031 Score=27.91 Aligned_cols=22 Identities=36% Similarity=0.379 Sum_probs=10.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHC
Q ss_conf 8099994699997579999880
Q 000224 589 NQILALLGHNGAGKSTTISMLV 610 (1833)
Q Consensus 589 Gei~~LLG~NGAGKSTll~iL~ 610 (1833)
|-+..|.|+.||||||+-+.|+
T Consensus 19 g~vI~L~G~pGSGKTTiAk~La 40 (195)
T d1x6va3 19 GCTVWLTGLSGAGKTTVSMALE 40 (195)
T ss_dssp CEEEEEESSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
T ss_conf 9699988999999999999999
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.63 E-value=0.06 Score=25.94 Aligned_cols=28 Identities=21% Similarity=0.251 Sum_probs=23.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5881999995999968999999919988
Q 000224 1494 QAGECFGFLGTNGAGKTTTLSMISGEEY 1521 (1833)
Q Consensus 1494 ~~Gei~gllG~NGAGKTTll~~l~G~~~ 1521 (1833)
++|-+..+-|+-||||||..+.|..-+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9805999989988899999999999998
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=91.59 E-value=0.07 Score=25.48 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=25.0
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCC
Q ss_conf 09999469999757999988099999951599967127
Q 000224 590 QILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI 627 (1833)
Q Consensus 590 ei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~di 627 (1833)
+++.+.|+.||||||+.+-|.. ...|.+.+...++
T Consensus 3 klIii~G~pGsGKTTla~~L~~---~~~~~~~~~~d~~ 37 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA---KNPGFYNINRDDY 37 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH---HSTTEEEECHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH---HCCCCEEECHHHH
T ss_conf 7999989999999999999999---5799799603999
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.57 E-value=0.071 Score=25.45 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999689999999199
Q 000224 1498 CFGFLGTNGAGKTTTLSMISGE 1519 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G~ 1519 (1833)
+++++|.-|+||||+++.|+|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=91.53 E-value=0.036 Score=27.42 Aligned_cols=21 Identities=38% Similarity=0.643 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959999689999999199
Q 000224 1499 FGFLGTNGAGKTTTLSMISGE 1519 (1833)
Q Consensus 1499 ~gllG~NGAGKTTll~~l~G~ 1519 (1833)
+||+|+-++||||+++.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899998799999999689
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=91.51 E-value=0.092 Score=24.68 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=13.2
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9994699997579999880999
Q 000224 592 LALLGHNGAGKSTTISMLVGLI 613 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~Gl~ 613 (1833)
++++|+.|+||||+++.++|-.
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHCCCC
T ss_conf 9999999989999999980899
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=91.50 E-value=0.061 Score=25.89 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=13.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99994699997579999880999
Q 000224 591 ILALLGHNGAGKSTTISMLVGLI 613 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~Gl~ 613 (1833)
|..+.|+.||||||+.+.|+..+
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998989989899999999999
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=91.48 E-value=0.033 Score=27.69 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999946999975799998809999
Q 000224 591 ILALLGHNGAGKSTTISMLVGLIP 614 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~Gl~~ 614 (1833)
++|+-|+.||||||+.+.|..++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 999968999987689999999973
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=91.46 E-value=0.074 Score=25.31 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=13.2
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9994699997579999880999
Q 000224 592 LALLGHNGAGKSTTISMLVGLI 613 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~Gl~ 613 (1833)
.|++||-.||||||++.|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999345884999999997034
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=91.46 E-value=0.091 Score=24.73 Aligned_cols=24 Identities=42% Similarity=0.582 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999968999999919988
Q 000224 1498 CFGFLGTNGAGKTTTLSMISGEEY 1521 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G~~~ 1521 (1833)
.+.++|+.|+||||+++.+.+...
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999999999899999999808998
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.40 E-value=0.073 Score=25.36 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999946999975799998809999
Q 000224 591 ILALLGHNGAGKSTTISMLVGLIP 614 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~Gl~~ 614 (1833)
+.|+-|+.||||||+.+.|.-.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999989997879999999999964
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=91.39 E-value=0.029 Score=28.06 Aligned_cols=27 Identities=33% Similarity=0.302 Sum_probs=22.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 819999959999689999999199889
Q 000224 1496 GECFGFLGTNGAGKTTTLSMISGEEYP 1522 (1833)
Q Consensus 1496 Gei~gllG~NGAGKTTll~~l~G~~~p 1522 (1833)
.-+.|+.||.||||||++.-|...+..
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~ 80 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIR 80 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 328974389999899999999999975
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.36 E-value=0.068 Score=25.56 Aligned_cols=22 Identities=41% Similarity=0.486 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9994699997579999880999
Q 000224 592 LALLGHNGAGKSTTISMLVGLI 613 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~Gl~ 613 (1833)
.+|.||+||||||+++.|.-..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999748
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=91.35 E-value=0.059 Score=26.02 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=14.1
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999469999757999988099
Q 000224 592 LALLGHNGAGKSTTISMLVGL 612 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~Gl 612 (1833)
.+++||-.||||||++.|+|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999907787099999999974
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=91.27 E-value=0.081 Score=25.05 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599996899999991998
Q 000224 1498 CFGFLGTNGAGKTTTLSMISGEE 1520 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G~~ 1520 (1833)
+++++|.-|+||||+++.|+|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=91.25 E-value=0.074 Score=25.35 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=12.5
Q ss_pred EEEEEECCCCCCHHHHHHHHCC
Q ss_conf 0999946999975799998809
Q 000224 590 QILALLGHNGAGKSTTISMLVG 611 (1833)
Q Consensus 590 ei~~LLG~NGAGKSTll~iL~G 611 (1833)
.+++++||-||||||+.+.|+-
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 4899989999988999999999
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=91.18 E-value=0.07 Score=25.51 Aligned_cols=24 Identities=33% Similarity=0.572 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999968999999919988
Q 000224 1498 CFGFLGTNGAGKTTTLSMISGEEY 1521 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G~~~ 1521 (1833)
...|+|..|+||||+++.|.|...
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~~ 57 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGERV 57 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899989999869999999858984
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=91.16 E-value=0.049 Score=26.53 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599996899999991998
Q 000224 1499 FGFLGTNGAGKTTTLSMISGEE 1520 (1833)
Q Consensus 1499 ~gllG~NGAGKTTll~~l~G~~ 1520 (1833)
+||+|.-|+||||+++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.15 E-value=0.087 Score=24.86 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=15.5
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99994699997579999880
Q 000224 591 ILALLGHNGAGKSTTISMLV 610 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~ 610 (1833)
++|+-|+-||||||+...|.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99837998788999999999
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=91.12 E-value=0.058 Score=26.03 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=11.7
Q ss_pred EEEECCCCCCHHHHHHHHC
Q ss_conf 9994699997579999880
Q 000224 592 LALLGHNGAGKSTTISMLV 610 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~ 610 (1833)
..|+|+.||||||+-++|+
T Consensus 5 Iil~G~~GsGKSTia~~LA 23 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELA 23 (170)
T ss_dssp EEEESCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 8998899998899999999
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=91.07 E-value=0.066 Score=25.65 Aligned_cols=20 Identities=35% Similarity=0.451 Sum_probs=12.1
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99946999975799998809
Q 000224 592 LALLGHNGAGKSTTISMLVG 611 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~G 611 (1833)
.+|.|+.||||||+.+.|+-
T Consensus 7 I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 98989999998999999999
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=91.07 E-value=0.071 Score=25.45 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599996899999991998
Q 000224 1498 CFGFLGTNGAGKTTTLSMISGEE 1520 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G~~ 1520 (1833)
...+.||.|+||||+.+.|+..+
T Consensus 9 ~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 9 TVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998999998999999999984
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.99 E-value=0.094 Score=24.64 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=20.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8099994699997579999880999
Q 000224 589 NQILALLGHNGAGKSTTISMLVGLI 613 (1833)
Q Consensus 589 Gei~~LLG~NGAGKSTll~iL~Gl~ 613 (1833)
...++|+||+|+||+|+++-|....
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 7719999989999999999999709
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=90.95 E-value=0.044 Score=26.89 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999968999999919988
Q 000224 1498 CFGFLGTNGAGKTTTLSMISGEEY 1521 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G~~~ 1521 (1833)
++|+-|+.||||||+-+.|..++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 999968999987689999999973
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.86 E-value=0.082 Score=25.04 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=11.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 80999946999975799998809
Q 000224 589 NQILALLGHNGAGKSTTISMLVG 611 (1833)
Q Consensus 589 Gei~~LLG~NGAGKSTll~iL~G 611 (1833)
|...++-|+-||||||.++.|.-
T Consensus 2 gkfIviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 2 SKYIVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 87899989988879999999999
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.71 E-value=0.062 Score=25.86 Aligned_cols=28 Identities=36% Similarity=0.479 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHH-CCCCCCCCC
Q ss_conf 9999469999757999988-099999951
Q 000224 591 ILALLGHNGAGKSTTISML-VGLIPPTTG 618 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL-~Gl~~ptsG 618 (1833)
-+.|||..|+||||+++-+ .|...||-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 79999899998899999895098278888
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=90.70 E-value=0.071 Score=25.46 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=15.8
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8847809999469999757999988099
Q 000224 585 TLYENQILALLGHNGAGKSTTISMLVGL 612 (1833)
Q Consensus 585 ~i~~Gei~~LLG~NGAGKSTll~iL~Gl 612 (1833)
.++.|+++-+-|+.|+||||+.-.++..
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~ 77 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAA 77 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 9667358998057774789999999999
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=90.66 E-value=0.095 Score=24.59 Aligned_cols=32 Identities=28% Similarity=0.448 Sum_probs=24.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 19999959999689999999199889950799968
Q 000224 1497 ECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFG 1531 (1833)
Q Consensus 1497 ei~gllG~NGAGKTTll~~l~G~~~p~~G~i~i~G 1531 (1833)
.++.|.||.||||||+.+.|...+. +...+.|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEH
T ss_conf 0899989999998999999999809---9889830
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=90.64 E-value=0.078 Score=25.18 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=11.5
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999469999757999988099
Q 000224 592 LALLGHNGAGKSTTISMLVGL 612 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~Gl 612 (1833)
..|.|+.||||||+.++|+-.
T Consensus 3 I~liG~~GsGKsTi~k~La~~ 23 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKD 23 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999889999999998
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.61 E-value=0.093 Score=24.66 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=23.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECC
Q ss_conf 9999469999757999988099999951599967
Q 000224 591 ILALLGHNGAGKSTTISMLVGLIPPTTGDALVFG 624 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G 624 (1833)
.+.|.||.|+||||+.+.|++.+.. +-+.+++
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~ 65 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN 65 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHC--CEEEEEC
T ss_conf 9998897998899999999998651--5489832
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.61 E-value=0.061 Score=25.92 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=12.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 780999946999975799998809
Q 000224 588 ENQILALLGHNGAGKSTTISMLVG 611 (1833)
Q Consensus 588 ~Gei~~LLG~NGAGKSTll~iL~G 611 (1833)
++.+..|+||-||||||..+.|+-
T Consensus 7 ~~~iI~l~G~pGSGKsT~a~~La~ 30 (194)
T d3adka_ 7 KSKIIFVVGGPGSGKGTQCEKIVQ 30 (194)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 782899989999987999999999
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.55 E-value=0.1 Score=24.36 Aligned_cols=27 Identities=19% Similarity=0.391 Sum_probs=17.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 780999946999975799998809999
Q 000224 588 ENQILALLGHNGAGKSTTISMLVGLIP 614 (1833)
Q Consensus 588 ~Gei~~LLG~NGAGKSTll~iL~Gl~~ 614 (1833)
+|-+.++-|..||||||.+++|.-.+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 768999989988869999999999997
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=90.51 E-value=0.095 Score=24.61 Aligned_cols=24 Identities=25% Similarity=0.160 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999968999999919988
Q 000224 1498 CFGFLGTNGAGKTTTLSMISGEEY 1521 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G~~~ 1521 (1833)
+..+.|+.||||||+.+.|...+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989899898999999999998
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.40 E-value=0.11 Score=24.22 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=12.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99994699997579999880999
Q 000224 591 ILALLGHNGAGKSTTISMLVGLI 613 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~Gl~ 613 (1833)
+.+++||-||||||..+.|+-.+
T Consensus 10 iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 10 VIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998999999899999999985
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.29 E-value=0.097 Score=24.53 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=25.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCEE
Q ss_conf 88199999599996899999991998899507
Q 000224 1495 AGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1526 (1833)
Q Consensus 1495 ~Gei~gllG~NGAGKTTll~~l~G~~~p~~G~ 1526 (1833)
+|-...+-|+-||||||..++|.-.+.. .|.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~-~~~ 32 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP-NCK 32 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT-SEE
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH-CCE
T ss_conf 7689999899888699999999999971-977
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.28 E-value=0.08 Score=25.10 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=23.5
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7588199999599996899999991998
Q 000224 1493 VQAGECFGFLGTNGAGKTTTLSMISGEE 1520 (1833)
Q Consensus 1493 v~~Gei~gllG~NGAGKTTll~~l~G~~ 1520 (1833)
+.++.++-|+||-||||||..+.|+-.+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4678289998999998799999999986
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.24 E-value=0.13 Score=23.64 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=12.7
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 8478099994699997579999880
Q 000224 586 LYENQILALLGHNGAGKSTTISMLV 610 (1833)
Q Consensus 586 i~~Gei~~LLG~NGAGKSTll~iL~ 610 (1833)
+++|+++.+.|+.|+||||+..-++
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la 44 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLA 44 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 8599799999589999999999999
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.23 E-value=0.071 Score=25.46 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=17.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 80999946999975799998809999
Q 000224 589 NQILALLGHNGAGKSTTISMLVGLIP 614 (1833)
Q Consensus 589 Gei~~LLG~NGAGKSTll~iL~Gl~~ 614 (1833)
+.+.++-|+-||||||+++.|...+.
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98899987888779999999999973
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.13 E-value=0.087 Score=24.87 Aligned_cols=32 Identities=31% Similarity=0.273 Sum_probs=24.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 9999959999689999999199889950799968
Q 000224 1498 CFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFG 1531 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G~~~p~~G~i~i~G 1531 (1833)
.+-|.||.|+||||+.+.|++.+.. +-+.+++
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~ 65 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN 65 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHC--CEEEEEC
T ss_conf 9998897998899999999998651--5489832
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.11 E-value=0.07 Score=25.50 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999469999757999988099
Q 000224 591 ILALLGHNGAGKSTTISMLVGL 612 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~Gl 612 (1833)
-++++|+.|+||||+++.+++-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999809
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=90.10 E-value=0.1 Score=24.32 Aligned_cols=122 Identities=20% Similarity=0.327 Sum_probs=59.7
Q ss_pred EEEEECCCCCCHHHHHHHH---CCCCCCCCCEEEECCCCCC-CCHHHHHCCEEEECCC-CCCCCCCCHHHHHHHHHHHCC
Q ss_conf 9999469999757999988---0999999515999671278-2178860446998268-988999999999999999609
Q 000224 591 ILALLGHNGAGKSTTISML---VGLIPPTTGDALVFGKNIT-ADMDEIRKGLGVCPQY-DILFPELTVREHLEMFAVLKG 665 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL---~Gl~~ptsG~v~i~G~di~-~~~~~~r~~iG~cpQ~-~~L~~~LTv~EhL~~~~~lkg 665 (1833)
-++++||-|+|||||...| +|... ..|++. +|.... ....+..+.+.+-... ...|++
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~-~~g~v~-~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--------------- 66 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKE-RRGRVE-EGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--------------- 66 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSS-SCCCGG-GTCCSSCCSHHHHHTTSCCSCEEEEEEETT---------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCH-HHCCCH-HCCCCCCCHHHHHHHCCEEEEECCCCCCCC---------------
T ss_conf 999994889809999999999709755-306622-221135626988873876875102222343---------------
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 9978899999999998399830063237-889568999999999718994999828889999999999999999983896
Q 000224 666 VKEELLESVVAEMVDEVGLADKVNIVVR-ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGR 744 (1833)
Q Consensus 666 ~~~~~~~~~v~~~l~~l~L~~~~~~~~~-~LSGG~KrkLsiA~Alig~p~iliLDEPTsGLDp~srr~iw~~l~~~~~gr 744 (1833)
. . -...|++.. .+++-+.+-++ +.+.-|+++| ...|+-+.+++ +|+.+.+.+..+
T Consensus 67 ~--------------~---~n~iDtPGh~dF~~e~~~al~-----~~D~avlvvd-a~~Gv~~~t~~-~~~~~~~~~~p~ 122 (267)
T d2dy1a2 67 H--------------R---VFLLDAPGYGDFVGEIRGALE-----AADAALVAVS-AEAGVQVGTER-AWTVAERLGLPR 122 (267)
T ss_dssp E--------------E---EEEEECCCSGGGHHHHHHHHH-----HCSEEEEEEE-TTTCSCHHHHH-HHHHHHHTTCCE
T ss_pred C--------------C---EEEECCCCHHHHHHHHHHHHC-----CCCCEEEEEE-CCCCCCCHHHH-HHHHHHHCCCCC
T ss_conf 2--------------1---068806815543355654312-----4673389842-35774211578-877655404431
Q ss_pred EEEEECCCHHH
Q ss_conf 99997079779
Q 000224 745 IILLTTHSMDE 755 (1833)
Q Consensus 745 tiiltTH~mdE 755 (1833)
.++ -..||.
T Consensus 123 ~i~--iNk~D~ 131 (267)
T d2dy1a2 123 MVV--VTKLDK 131 (267)
T ss_dssp EEE--EECGGG
T ss_pred CCC--CCCCCC
T ss_conf 013--332022
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.08 E-value=0.12 Score=23.87 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 881999995999968999999919988
Q 000224 1495 AGECFGFLGTNGAGKTTTLSMISGEEY 1521 (1833)
Q Consensus 1495 ~Gei~gllG~NGAGKTTll~~l~G~~~ 1521 (1833)
+|....+-|+-||||||..+.|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 987899989988879999999999999
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=90.04 E-value=0.11 Score=24.28 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599996899999991998
Q 000224 1498 CFGFLGTNGAGKTTTLSMISGEE 1520 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G~~ 1520 (1833)
..-|.||.|+||||+-+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.01 E-value=0.11 Score=24.08 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999968999999919988
Q 000224 1498 CFGFLGTNGAGKTTTLSMISGEEY 1521 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G~~~ 1521 (1833)
...++|+.|+||||+++.+++...
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~ 25 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRL 25 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999999999999958998
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=89.97 E-value=0.057 Score=26.10 Aligned_cols=112 Identities=21% Similarity=0.276 Sum_probs=60.0
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 47809999469999757999988099999951599967127821788604469982689889999999999999996099
Q 000224 587 YENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV 666 (1833)
Q Consensus 587 ~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~di~~~~~~~r~~iG~cpQ~~~L~~~LTv~EhL~~~~~lkg~ 666 (1833)
.++-++.+.||-|||||||+..+...+.....++.--...+...... + .|..+.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~~~~----~---~q~~v~------------------- 209 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDG----I---GQTQVN------------------- 209 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSS----S---EEEECB-------------------
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCC----C---CEEEEC-------------------
T ss_conf 41054898767877744779998666257874699962674345678----8---702655-------------------
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEE
Q ss_conf 97889999999999839983006323788956899999999971899499982888999999999999999998389699
Q 000224 667 KEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRII 746 (1833)
Q Consensus 667 ~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSGG~KrkLsiA~Alig~p~iliLDEPTsGLDp~srr~iw~~l~~~~~grti 746 (1833)
.. .|..---.+..+|=.+|+|++..|.. |+.+.+. +++....|+.+
T Consensus 210 -------------------~~---------~~~~~~~~l~~~lR~dPDvi~igEiR---d~~ta~~---a~~aa~tGhlV 255 (401)
T d1p9ra_ 210 -------------------PR---------VDMTFARGLRAILRQDPDVVMVGEIR---DLETAQI---AVQASLTGHLV 255 (401)
T ss_dssp -------------------GG---------GTBCHHHHHHHHGGGCCSEEEESCCC---SHHHHHH---HHHHHHTTCEE
T ss_pred -------------------CC---------CCCCHHHHHHHHHHHCCCEEEECCCC---CHHHHHH---HHHHHHCCCEE
T ss_conf -------------------87---------67799999999984138889845768---7599999---99997249858
Q ss_pred EEECCCHHHHHH
Q ss_conf 997079779985
Q 000224 747 LLTTHSMDEAEE 758 (1833)
Q Consensus 747 iltTH~mdEad~ 758 (1833)
+-|-|--+-++.
T Consensus 256 ~tTlHa~~a~~~ 267 (401)
T d1p9ra_ 256 MSTLHTNTAVGA 267 (401)
T ss_dssp EEEECCSSSHHH
T ss_pred EEEECCCCHHHH
T ss_conf 998336766766
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.91 E-value=0.092 Score=24.68 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599996899999991998
Q 000224 1498 CFGFLGTNGAGKTTTLSMISGEE 1520 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G~~ 1520 (1833)
.+.|+|+-||||||+++-|+|..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=89.91 E-value=0.082 Score=25.02 Aligned_cols=22 Identities=32% Similarity=0.294 Sum_probs=11.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999689999999199
Q 000224 1498 CFGFLGTNGAGKTTTLSMISGE 1519 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G~ 1519 (1833)
+.++-|+-||||||+++.|...
T Consensus 11 ~I~ieG~~GsGKTTl~~~L~~~ 32 (197)
T d2vp4a1 11 TVLIEGNIGSGKTTYLNHFEKY 32 (197)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9998899998889999999987
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=89.91 E-value=0.12 Score=23.84 Aligned_cols=24 Identities=42% Similarity=0.494 Sum_probs=20.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 809999469999757999988099
Q 000224 589 NQILALLGHNGAGKSTTISMLVGL 612 (1833)
Q Consensus 589 Gei~~LLG~NGAGKSTll~iL~Gl 612 (1833)
.-+.|+.|+=||||||++.-|...
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 159861179988899999999998
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=89.88 E-value=0.11 Score=24.11 Aligned_cols=20 Identities=30% Similarity=0.622 Sum_probs=12.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999599996899999991
Q 000224 1498 CFGFLGTNGAGKTTTLSMIS 1517 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~ 1517 (1833)
++|+.|+.||||||..++|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998988778999999999
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=89.88 E-value=0.1 Score=24.37 Aligned_cols=21 Identities=38% Similarity=0.659 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999946999975799998809
Q 000224 591 ILALLGHNGAGKSTTISMLVG 611 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~G 611 (1833)
|.|+.|..||||||..++|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989887789999999998
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.87 E-value=0.11 Score=24.20 Aligned_cols=38 Identities=8% Similarity=0.010 Sum_probs=14.4
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHH
Q ss_conf 499982888999999999999999998389699997079779
Q 000224 714 KVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDE 755 (1833)
Q Consensus 714 ~iliLDEPTsGLDp~srr~iw~~l~~~~~grtiiltTH~mdE 755 (1833)
+++++|-. ...... -..+++.+++ .++-+++.-...|.
T Consensus 137 d~~l~~~~-~~~~~~-d~~l~~~l~~--~~k~~~~V~nK~D~ 174 (400)
T d1tq4a_ 137 DFFIIISA-TRFKKN-DIDIAKAISM--MKKEFYFVRTKVDS 174 (400)
T ss_dssp SEEEEEES-SCCCHH-HHHHHHHHHH--TTCEEEEEECCHHH
T ss_pred EEEEEECC-CCCCHH-HHHHHHHHHH--CCCCEEEEEECCCC
T ss_conf 59999658-888788-9999999997--69987999708632
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=89.63 E-value=0.13 Score=23.65 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=21.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8819999959999689999999199
Q 000224 1495 AGECFGFLGTNGAGKTTTLSMISGE 1519 (1833)
Q Consensus 1495 ~Gei~gllG~NGAGKTTll~~l~G~ 1519 (1833)
+..++.++||-||||||+.+.|+-.
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9948999899999889999999999
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=89.49 E-value=0.12 Score=23.87 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599996899999991998
Q 000224 1499 FGFLGTNGAGKTTTLSMISGEE 1520 (1833)
Q Consensus 1499 ~gllG~NGAGKTTll~~l~G~~ 1520 (1833)
..|.||-||||||+.+.|+-.+
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9898999999899999999997
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=89.47 E-value=0.14 Score=23.43 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 199999599996899999991998
Q 000224 1497 ECFGFLGTNGAGKTTTLSMISGEE 1520 (1833)
Q Consensus 1497 ei~gllG~NGAGKTTll~~l~G~~ 1520 (1833)
=-++++|+-|+||||+++.|+|.-
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 899998999998999999996888
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.33 E-value=0.13 Score=23.68 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=12.9
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999946999975799998809
Q 000224 591 ILALLGHNGAGKSTTISMLVG 611 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~G 611 (1833)
+..++||-||||||..++|+-
T Consensus 3 iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999979999998999999999
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.30 E-value=0.11 Score=24.05 Aligned_cols=20 Identities=40% Similarity=0.446 Sum_probs=11.6
Q ss_pred EEECCCCCCHHHHHHHHCCC
Q ss_conf 99469999757999988099
Q 000224 593 ALLGHNGAGKSTTISMLVGL 612 (1833)
Q Consensus 593 ~LLG~NGAGKSTll~iL~Gl 612 (1833)
+|+|+.||||||+-++|+-.
T Consensus 5 vliG~~G~GKSTig~~La~~ 24 (165)
T d2iyva1 5 VLVGLPGSGKSTIGRRLAKA 24 (165)
T ss_dssp EEECSTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
T ss_conf 99889999889999999998
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.27 E-value=0.12 Score=23.94 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=14.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599996899999991998
Q 000224 1499 FGFLGTNGAGKTTTLSMISGEE 1520 (1833)
Q Consensus 1499 ~gllG~NGAGKTTll~~l~G~~ 1520 (1833)
+-|.||.|+||||+.++++..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9997899974879999999998
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=89.24 E-value=0.13 Score=23.61 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599996899999991998
Q 000224 1499 FGFLGTNGAGKTTTLSMISGEE 1520 (1833)
Q Consensus 1499 ~gllG~NGAGKTTll~~l~G~~ 1520 (1833)
..|.|+.||||||+-++|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.22 E-value=0.13 Score=23.58 Aligned_cols=44 Identities=11% Similarity=0.197 Sum_probs=30.6
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
Q ss_conf 994999828889999999999999999983896999970797799
Q 000224 712 DSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEA 756 (1833)
Q Consensus 712 ~p~iliLDEPTsGLDp~srr~iw~~l~~~~~grtiiltTH~mdEa 756 (1833)
...++++||-- .+.......++.++........+|++|+..+..
T Consensus 109 ~~~iilide~d-~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i 152 (231)
T d1iqpa2 109 SFKIIFLDEAD-ALTQDAQQALRRTMEMFSSNVRFILSCNYSSKI 152 (231)
T ss_dssp SCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CCEEEEEHHHH-HCCHHHHHHHHHHCCCCCCCEEEEECCCCHHHC
T ss_conf 72288614344-312147898764112477644788614876656
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.17 E-value=0.25 Score=21.70 Aligned_cols=20 Identities=35% Similarity=0.612 Sum_probs=14.0
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99946999975799998809
Q 000224 592 LALLGHNGAGKSTTISMLVG 611 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~G 611 (1833)
++++|..|+||||+++-+++
T Consensus 5 i~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899798999999970
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.16 E-value=0.14 Score=23.55 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999946999975799998809999
Q 000224 591 ILALLGHNGAGKSTTISMLVGLIP 614 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~Gl~~ 614 (1833)
++.++|..|+||||+.+.|+..+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989999999999999999997
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.10 E-value=0.15 Score=23.27 Aligned_cols=32 Identities=22% Similarity=0.185 Sum_probs=24.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 881999995999968999999919988995079996
Q 000224 1495 AGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIF 1530 (1833)
Q Consensus 1495 ~Gei~gllG~NGAGKTTll~~l~G~~~p~~G~i~i~ 1530 (1833)
+-.++.|+||-||||||..+.|+..+ |-.++.
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is 38 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS 38 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEE
T ss_conf 97289998999999899999999985----990885
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=89.05 E-value=0.075 Score=25.31 Aligned_cols=21 Identities=29% Similarity=0.645 Sum_probs=12.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959999689999999199
Q 000224 1499 FGFLGTNGAGKTTTLSMISGE 1519 (1833)
Q Consensus 1499 ~gllG~NGAGKTTll~~l~G~ 1519 (1833)
++|+|+-++||||+++.|+|.
T Consensus 19 I~lvG~~NvGKSSL~n~L~~~ 39 (188)
T d1puia_ 19 VAFAGRSNAGKSSALNTLTNQ 39 (188)
T ss_dssp EEEEECTTSSHHHHHTTTCCC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999889999899999998589
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=89.04 E-value=0.16 Score=23.12 Aligned_cols=23 Identities=26% Similarity=0.612 Sum_probs=14.1
Q ss_pred EEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 99946999975799998809999
Q 000224 592 LALLGHNGAGKSTTISMLVGLIP 614 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~Gl~~ 614 (1833)
++++||=.||||||++.|+|...
T Consensus 11 i~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 11 IGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHC
T ss_conf 99997248869999999970412
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=89.03 E-value=0.14 Score=23.52 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599996899999991998
Q 000224 1499 FGFLGTNGAGKTTTLSMISGEE 1520 (1833)
Q Consensus 1499 ~gllG~NGAGKTTll~~l~G~~ 1520 (1833)
++++|+-+||||||++.|+|..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCHHHHHHHHHHHC
T ss_conf 9999077870999999999743
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.96 E-value=0.11 Score=24.18 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHH-HCCCCCCCEE
Q ss_conf 9999959999689999999-1998899507
Q 000224 1498 CFGFLGTNGAGKTTTLSMI-SGEEYPTDGT 1526 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l-~G~~~p~~G~ 1526 (1833)
-+.+||..|+||||+++-+ .+...||-|-
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG~ 37 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSGI 37 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCE
T ss_conf 799998999988999998950982788886
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.92 E-value=0.27 Score=21.49 Aligned_cols=31 Identities=29% Similarity=0.460 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHCC-C----CCCCCCEEE
Q ss_conf 999946999975799998809-9----999951599
Q 000224 591 ILALLGHNGAGKSTTISMLVG-L----IPPTTGDAL 621 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~G-l----~~ptsG~v~ 621 (1833)
-++++|..|+||||+++-+++ . ..||.|...
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~ 42 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY 42 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCE
T ss_conf 899999999799999999973998854576645200
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.92 E-value=0.15 Score=23.22 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599996899999991998
Q 000224 1498 CFGFLGTNGAGKTTTLSMISGEE 1520 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G~~ 1520 (1833)
-+.++|+.|+||||+++.+++..
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=88.85 E-value=0.15 Score=23.32 Aligned_cols=20 Identities=35% Similarity=0.620 Sum_probs=10.0
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99994699997579999880
Q 000224 591 ILALLGHNGAGKSTTISMLV 610 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~ 610 (1833)
|.|+.|..||||||..+++.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=88.72 E-value=0.13 Score=23.78 Aligned_cols=117 Identities=21% Similarity=0.346 Sum_probs=59.6
Q ss_pred EEEEECCCCCCHHHHHHHH---CCCCCCCCCEEEECCCCC-CCCHHHHHCCEEEECCCC-CCCCCCCHHHHHHHHHHHCC
Q ss_conf 9999469999757999988---099999951599967127-821788604469982689-88999999999999999609
Q 000224 591 ILALLGHNGAGKSTTISML---VGLIPPTTGDALVFGKNI-TADMDEIRKGLGVCPQYD-ILFPELTVREHLEMFAVLKG 665 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL---~Gl~~ptsG~v~i~G~di-~~~~~~~r~~iG~cpQ~~-~L~~~LTv~EhL~~~~~lkg 665 (1833)
-++++||-|||||||...| +|.+.. .|++. +|..+ ..+..+..+.+.+-...- .-|.+.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~-~g~v~-~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~-------------- 71 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHK-IGEVH-EGAATMDFMEQERERGITITAAVTTCFWKDH-------------- 71 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC---------------------CCCCCCCSEEEEEETTE--------------
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCCC-CCCEE-CCCEEEECCHHHHHCCCCCCCCEEEECCCCE--------------
T ss_conf 9999958989989999999996485340-23365-1846985658887518860011234315983--------------
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 9978899999999998399830063237-889568999999999718994999828889999999999999999983896
Q 000224 666 VKEELLESVVAEMVDEVGLADKVNIVVR-ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGR 744 (1833)
Q Consensus 666 ~~~~~~~~~v~~~l~~l~L~~~~~~~~~-~LSGG~KrkLsiA~Alig~p~iliLDEPTsGLDp~srr~iw~~l~~~~~gr 744 (1833)
--...|++.. .+++-+.+-|+ +.+.-|+++| +..|+.+.++ .+|+..++.+--|
T Consensus 72 ------------------~~n~iDtPG~~dF~~e~~~~l~-----~~D~avlVvd-a~~Gv~~~T~-~~w~~a~~~~lP~ 126 (276)
T d2bv3a2 72 ------------------RINIIDAPGHVDFTIEVERSMR-----VLDGAIVVFD-SSQGVEPQSE-TVWRQAEKYKVPR 126 (276)
T ss_dssp ------------------EEEEECCCSSSSCSTTHHHHHH-----HCCEEEEEEE-TTTSSCHHHH-HHHHHHHTTTCCE
T ss_pred ------------------EEEEECCCCHHHHHHHHHHHHH-----HHHHEEEECC-CCCCCCHHHH-HHHHHHHHCCCCE
T ss_conf ------------------8999527860226999999999-----6300577322-5677446699-9999999859997
Q ss_pred EEEE
Q ss_conf 9999
Q 000224 745 IILL 748 (1833)
Q Consensus 745 tiil 748 (1833)
.+.+
T Consensus 127 i~fI 130 (276)
T d2bv3a2 127 IAFA 130 (276)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 9998
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.72 E-value=0.085 Score=24.93 Aligned_cols=26 Identities=31% Similarity=0.281 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88199999599996899999991998
Q 000224 1495 AGECFGFLGTNGAGKTTTLSMISGEE 1520 (1833)
Q Consensus 1495 ~Gei~gllG~NGAGKTTll~~l~G~~ 1520 (1833)
+|-+.-|.|+-||||||+-+.|.-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99699988999999999999999999
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=88.69 E-value=0.16 Score=23.13 Aligned_cols=20 Identities=45% Similarity=0.617 Sum_probs=13.1
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99994699997579999880
Q 000224 591 ILALLGHNGAGKSTTISMLV 610 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~ 610 (1833)
|.|+.|..||||||..+++.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99978988688999999999
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.64 E-value=0.24 Score=21.92 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=24.5
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9758819999959999689999999199
Q 000224 1492 SVQAGECFGFLGTNGAGKTTTLSMISGE 1519 (1833)
Q Consensus 1492 ~v~~Gei~gllG~NGAGKTTll~~l~G~ 1519 (1833)
.+++|+++-+.||.|+||||+.-.++..
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9859979999958999999999999999
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=88.61 E-value=0.17 Score=22.86 Aligned_cols=35 Identities=17% Similarity=0.163 Sum_probs=28.8
Q ss_pred CEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 013235888478099994699997579999880999
Q 000224 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLI 613 (1833)
Q Consensus 578 av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~ 613 (1833)
++ |.=+.+-+||..++.|+.|+||||++.+++.-.
T Consensus 33 ~I-D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 33 VL-DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp HH-HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred EE-EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 56-412564578755686799988789999999977
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=88.46 E-value=0.19 Score=22.58 Aligned_cols=28 Identities=25% Similarity=0.125 Sum_probs=19.5
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7588199999599996899999991998
Q 000224 1493 VQAGECFGFLGTNGAGKTTTLSMISGEE 1520 (1833)
Q Consensus 1493 v~~Gei~gllG~NGAGKTTll~~l~G~~ 1520 (1833)
.++|.++.|-|+=||||||+.|-++.-+
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 7998299996687765889999987642
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=88.46 E-value=0.11 Score=24.17 Aligned_cols=19 Identities=21% Similarity=0.422 Sum_probs=12.2
Q ss_pred EEEECCCCCCHHHHHHHHC
Q ss_conf 9994699997579999880
Q 000224 592 LALLGHNGAGKSTTISMLV 610 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~ 610 (1833)
..|.||-||||||+.+.|+
T Consensus 6 I~i~GppGsGKsT~a~~La 24 (189)
T d1zaka1 6 VMISGAPASGKGTQCELIK 24 (189)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9998899999899999999
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=88.46 E-value=0.14 Score=23.54 Aligned_cols=22 Identities=41% Similarity=0.519 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999689999999199
Q 000224 1498 CFGFLGTNGAGKTTTLSMISGE 1519 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G~ 1519 (1833)
+++++|+-+||||||++.|++.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.43 E-value=0.13 Score=23.63 Aligned_cols=20 Identities=30% Similarity=0.639 Sum_probs=13.5
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99946999975799998809
Q 000224 592 LALLGHNGAGKSTTISMLVG 611 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~G 611 (1833)
.+++|..|+||||+++.+++
T Consensus 5 i~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999698999999970
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=88.36 E-value=0.14 Score=23.48 Aligned_cols=21 Identities=38% Similarity=0.392 Sum_probs=11.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959999689999999199
Q 000224 1499 FGFLGTNGAGKTTTLSMISGE 1519 (1833)
Q Consensus 1499 ~gllG~NGAGKTTll~~l~G~ 1519 (1833)
+.++|..|+||||+++-|.+.
T Consensus 18 I~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 18 VIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999668
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=88.20 E-value=0.18 Score=22.65 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999968999999919
Q 000224 1498 CFGFLGTNGAGKTTTLSMISG 1518 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G 1518 (1833)
++||.|.-||||||..+++.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=88.14 E-value=0.18 Score=22.80 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599996899999991998
Q 000224 1499 FGFLGTNGAGKTTTLSMISGEE 1520 (1833)
Q Consensus 1499 ~gllG~NGAGKTTll~~l~G~~ 1520 (1833)
.-|+|+.||||||+-+.|+-.+
T Consensus 5 Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999994
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=88.14 E-value=0.21 Score=22.19 Aligned_cols=20 Identities=45% Similarity=0.552 Sum_probs=9.5
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99994699997579999880
Q 000224 591 ILALLGHNGAGKSTTISMLV 610 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~ 610 (1833)
-.+|+||-||||||..+.|+
T Consensus 5 riil~G~pGSGKsT~a~~La 24 (190)
T d1ak2a1 5 RAVLLGPPGAGKGTQAPKLA 24 (190)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89998999998899999999
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.13 E-value=0.18 Score=22.64 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=16.0
Q ss_pred EEECCEEEEEECCCCCCHHHHHH
Q ss_conf 88478099994699997579999
Q 000224 585 TLYENQILALLGHNGAGKSTTIS 607 (1833)
Q Consensus 585 ~i~~Gei~~LLG~NGAGKSTll~ 607 (1833)
.+++|+++.+.|+.|+||||+.-
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~l 54 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAH 54 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHH
T ss_conf 95588799998589898899999
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=88.10 E-value=0.2 Score=22.47 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=21.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 58819999959999689999999199
Q 000224 1494 QAGECFGFLGTNGAGKTTTLSMISGE 1519 (1833)
Q Consensus 1494 ~~Gei~gllG~NGAGKTTll~~l~G~ 1519 (1833)
++|--..|+||-||||||.-+.|+-.
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99638999899999889999999998
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.08 E-value=0.09 Score=24.77 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999946999975799998809999
Q 000224 591 ILALLGHNGAGKSTTISMLVGLIP 614 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~Gl~~ 614 (1833)
|.|+-|++||||||+.+.|.-.+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989997809999999999971
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=88.07 E-value=0.19 Score=22.49 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999689999999199
Q 000224 1498 CFGFLGTNGAGKTTTLSMISGE 1519 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G~ 1519 (1833)
++||.|.-||||||..+++...
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9997898868899999999987
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.06 E-value=0.22 Score=22.11 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=13.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599996899999991998
Q 000224 1498 CFGFLGTNGAGKTTTLSMISGEE 1520 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G~~ 1520 (1833)
.+-|.||.|+||||+.+.++...
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998799998889999999998
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.95 E-value=0.2 Score=22.44 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999946999975799998809999
Q 000224 591 ILALLGHNGAGKSTTISMLVGLIP 614 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~Gl~~ 614 (1833)
...|.||.|+||||+.+.++..+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 499987999988899999999987
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=87.93 E-value=0.17 Score=22.90 Aligned_cols=19 Identities=42% Similarity=0.672 Sum_probs=16.4
Q ss_pred EEEECCCCCCHHHHHHHHC
Q ss_conf 9994699997579999880
Q 000224 592 LALLGHNGAGKSTTISMLV 610 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~ 610 (1833)
++++||-++|||||+..|.
T Consensus 6 i~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999447999999999999
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=87.88 E-value=0.16 Score=23.02 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99946999975799998809
Q 000224 592 LALLGHNGAGKSTTISMLVG 611 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~G 611 (1833)
.+++||-+||||||++.|.+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99994789849999999999
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=87.86 E-value=0.15 Score=23.22 Aligned_cols=109 Identities=21% Similarity=0.227 Sum_probs=58.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 88199999599996899999991998899507999685089996876044299805898798999999999999970999
Q 000224 1495 AGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVA 1574 (1833)
Q Consensus 1495 ~Gei~gllG~NGAGKTTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~ig~~pQ~~~l~~~ltv~e~l~~~~~l~g~~ 1574 (1833)
++-.+-+.||.|+|||||+..+...+.....+|.--..++... ...+.- .|.+
T Consensus 157 ~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~----~~~~~q-~~v~---------------------- 209 (401)
T d1p9ra_ 157 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFD----IDGIGQ-TQVN---------------------- 209 (401)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSC----CSSSEE-EECB----------------------
T ss_pred HHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC----CCCCCE-EEEC----------------------
T ss_conf 1054898767877744779998666257874699962674345----678870-2655----------------------
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 05599999999987499620188989989469999999999906999899938789989999999999999987416996
Q 000224 1575 EYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKT 1654 (1833)
Q Consensus 1575 ~~~~~~~v~~~l~~~~L~~~~~~~~~~lSgG~krrl~iA~al~~~p~illLDEPt~GlDp~~r~~i~~~i~~l~~~~~~~ 1654 (1833)
.... .++ --.+..+|=.+|++++..|-. |+.+.+...+.- ..| .
T Consensus 210 ------------------~~~~---~~~------~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~aa-----~tG-h 253 (401)
T d1p9ra_ 210 ------------------PRVD---MTF------ARGLRAILRQDPDVVMVGEIR---DLETAQIAVQAS-----LTG-H 253 (401)
T ss_dssp ------------------GGGT---BCH------HHHHHHHGGGCCSEEEESCCC---SHHHHHHHHHHH-----HTT-C
T ss_pred ------------------CCCC---CCH------HHHHHHHHHHCCCEEEECCCC---CHHHHHHHHHHH-----HCC-C
T ss_conf ------------------8767---799------999999984138889845768---759999999997-----249-8
Q ss_pred EEEEECCCHHHH
Q ss_conf 999963778889
Q 000224 1655 AVILTTHSMNEA 1666 (1833)
Q Consensus 1655 tiilttH~m~e~ 1666 (1833)
-|+-|-|--+-.
T Consensus 254 lV~tTlHa~~a~ 265 (401)
T d1p9ra_ 254 LVMSTLHTNTAV 265 (401)
T ss_dssp EEEEEECCSSSH
T ss_pred EEEEEECCCCHH
T ss_conf 589983367667
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=87.84 E-value=0.14 Score=23.50 Aligned_cols=33 Identities=24% Similarity=0.162 Sum_probs=27.6
Q ss_pred EEEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 359975881999995999968999999919988
Q 000224 1489 LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY 1521 (1833)
Q Consensus 1489 is~~v~~Gei~gllG~NGAGKTTll~~l~G~~~ 1521 (1833)
.=+.+-+|+..+|.|+.|.||||++.+++.-..
T Consensus 36 ~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 36 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred ECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 125645787556867999887899999999775
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=87.81 E-value=0.13 Score=23.75 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=12.5
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99946999975799998809
Q 000224 592 LALLGHNGAGKSTTISMLVG 611 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~G 611 (1833)
++++|+.|+||||+++-+++
T Consensus 3 ivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999898999999965
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=87.80 E-value=0.21 Score=22.29 Aligned_cols=22 Identities=32% Similarity=0.286 Sum_probs=10.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHC
Q ss_conf 8099994699997579999880
Q 000224 589 NQILALLGHNGAGKSTTISMLV 610 (1833)
Q Consensus 589 Gei~~LLG~NGAGKSTll~iL~ 610 (1833)
|.+.-|.|..||||||+.+.|.
T Consensus 24 g~vIwltGlsGsGKTTia~~L~ 45 (208)
T d1m7ga_ 24 GLTIWLTGLSASGKSTLAVELE 45 (208)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
T ss_conf 8699998999999899999999
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=87.75 E-value=0.14 Score=23.47 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=21.2
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099994699997579999880999
Q 000224 590 QILALLGHNGAGKSTTISMLVGLI 613 (1833)
Q Consensus 590 ei~~LLG~NGAGKSTll~iL~Gl~ 613 (1833)
-+.++-|.-||||||+++.|...+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199988999988899999999870
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=87.74 E-value=0.13 Score=23.70 Aligned_cols=21 Identities=38% Similarity=0.501 Sum_probs=13.8
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999469999757999988099
Q 000224 592 LALLGHNGAGKSTTISMLVGL 612 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~Gl 612 (1833)
++++|..|+||||+++-+++-
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998999999999679
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.63 E-value=0.24 Score=21.81 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=11.8
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 7588199999599996899999991
Q 000224 1493 VQAGECFGFLGTNGAGKTTTLSMIS 1517 (1833)
Q Consensus 1493 v~~Gei~gllG~NGAGKTTll~~l~ 1517 (1833)
+++|+++-|.|+-|+||||+..-++
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 8699699998389998899999999
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=87.55 E-value=0.13 Score=23.58 Aligned_cols=20 Identities=30% Similarity=0.557 Sum_probs=13.0
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99946999975799998809
Q 000224 592 LALLGHNGAGKSTTISMLVG 611 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~G 611 (1833)
.+++|+.|+||||+++-+++
T Consensus 5 i~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999898999999971
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=87.42 E-value=0.22 Score=22.13 Aligned_cols=23 Identities=43% Similarity=0.495 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99995999968999999919988
Q 000224 1499 FGFLGTNGAGKTTTLSMISGEEY 1521 (1833)
Q Consensus 1499 ~gllG~NGAGKTTll~~l~G~~~ 1521 (1833)
+.++|..|+||||+++-+++...
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~~ 30 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGEV 30 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999899999999967987
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=87.42 E-value=0.23 Score=21.94 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=21.9
Q ss_pred EEEECCCCCCHHHHHHHHCCCCC-CCC
Q ss_conf 99946999975799998809999-995
Q 000224 592 LALLGHNGAGKSTTISMLVGLIP-PTT 617 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~Gl~~-pts 617 (1833)
++++|+-+|||||+++.|.|.-- |++
T Consensus 27 ivVvG~~ssGKSSliNaLlG~~~lP~~ 53 (306)
T d1jwyb_ 27 IVVVGSQSSGKSSVLENIVGRDFLPRG 53 (306)
T ss_dssp EEEEECSSSSHHHHHHHHHTSCCCCC-
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCC
T ss_conf 999818989799999999689978878
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.41 E-value=0.12 Score=23.86 Aligned_cols=27 Identities=19% Similarity=0.129 Sum_probs=22.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 881999995999968999999919988
Q 000224 1495 AGECFGFLGTNGAGKTTTLSMISGEEY 1521 (1833)
Q Consensus 1495 ~Gei~gllG~NGAGKTTll~~l~G~~~ 1521 (1833)
++...++-|+-||||||+++.|...+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=87.39 E-value=0.26 Score=21.68 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=12.5
Q ss_pred EECCEEEEEECCCCCCHHHHHHHH
Q ss_conf 847809999469999757999988
Q 000224 586 LYENQILALLGHNGAGKSTTISML 609 (1833)
Q Consensus 586 i~~Gei~~LLG~NGAGKSTll~iL 609 (1833)
+++|+++.+.|+.|+||||+.--+
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~ 54 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQS 54 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHH
T ss_conf 628859999917999989999999
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=87.37 E-value=0.2 Score=22.44 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99994699997579999880999
Q 000224 591 ILALLGHNGAGKSTTISMLVGLI 613 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~Gl~ 613 (1833)
-.+++|..|+||||+++-|.|--
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989899999996688
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.35 E-value=0.16 Score=23.15 Aligned_cols=56 Identities=23% Similarity=0.348 Sum_probs=36.3
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEE-EEECCEECCCCHHHHCCCEEEEE
Q ss_conf 97588199999599996899999991998899507-99968508999687604429980
Q 000224 1492 SVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT-AFIFGKDIRSDPKAARRLIGYCP 1549 (1833)
Q Consensus 1492 ~v~~Gei~gllG~NGAGKTTll~~l~G~~~p~~G~-i~i~G~~i~~~~~~~~~~ig~~p 1549 (1833)
.++.|.+.-+.||+|+||||+.-.++.......|. ++|+...-. ++.. .+++|.=+
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~-~~e~-a~~~GvD~ 112 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHAL-DPDY-AKKLGVDT 112 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCC-CHHH-HHHHTCCG
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCC-CHHH-HHHHCCCH
T ss_conf 866633699964887488999999999875489889999897667-9999-99809988
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=87.33 E-value=0.24 Score=21.82 Aligned_cols=41 Identities=20% Similarity=0.166 Sum_probs=28.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCC--CEEEEECCEEC
Q ss_conf 588199999599996899999991998899--50799968508
Q 000224 1494 QAGECFGFLGTNGAGKTTTLSMISGEEYPT--DGTAFIFGKDI 1534 (1833)
Q Consensus 1494 ~~Gei~gllG~NGAGKTTll~~l~G~~~p~--~G~i~i~G~~i 1534 (1833)
++|-++=|.|..||||||+-+.|.-.+... .-.+.++|.++
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i 64 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 64 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHH
T ss_conf 9986999989999998999999998877742750899753678
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.31 E-value=0.23 Score=21.94 Aligned_cols=23 Identities=35% Similarity=0.326 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599996899999991998
Q 000224 1498 CFGFLGTNGAGKTTTLSMISGEE 1520 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G~~ 1520 (1833)
++.|+||-||||||.-+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=87.05 E-value=0.22 Score=22.11 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=14.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999469999757999988099
Q 000224 591 ILALLGHNGAGKSTTISMLVGL 612 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~Gl 612 (1833)
|.++.||-||||+|.-+.|+--
T Consensus 5 iI~I~GppGSGKgT~ak~La~~ 26 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEA 26 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8997799988989999999999
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.87 E-value=0.26 Score=21.68 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999968999999919988
Q 000224 1498 CFGFLGTNGAGKTTTLSMISGEEY 1521 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G~~~ 1521 (1833)
++.+.|..|+||||+.+.|+..+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989999999999999999997
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=86.87 E-value=0.18 Score=22.76 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99995999968999999919988
Q 000224 1499 FGFLGTNGAGKTTTLSMISGEEY 1521 (1833)
Q Consensus 1499 ~gllG~NGAGKTTll~~l~G~~~ 1521 (1833)
+.++|+.|+||||+++.+++...
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~~~ 25 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLGEI 25 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999898999999965988
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=86.71 E-value=0.25 Score=21.77 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599996899999991998
Q 000224 1499 FGFLGTNGAGKTTTLSMISGEE 1520 (1833)
Q Consensus 1499 ~gllG~NGAGKTTll~~l~G~~ 1520 (1833)
+.++|+.|+||||+++.+.+..
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~~ 26 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASGQ 26 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989899999997197
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.68 E-value=0.23 Score=21.95 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599996899999991998
Q 000224 1499 FGFLGTNGAGKTTTLSMISGEE 1520 (1833)
Q Consensus 1499 ~gllG~NGAGKTTll~~l~G~~ 1520 (1833)
..|+|+.||||||+-+.|+-.+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.63 E-value=0.24 Score=21.84 Aligned_cols=20 Identities=35% Similarity=0.647 Sum_probs=14.6
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99946999975799998809
Q 000224 592 LALLGHNGAGKSTTISMLVG 611 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~G 611 (1833)
.+++|..|+||||+++.+.+
T Consensus 7 i~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999098999999982
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.56 E-value=0.24 Score=21.90 Aligned_cols=22 Identities=41% Similarity=0.681 Sum_probs=13.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999469999757999988099
Q 000224 591 ILALLGHNGAGKSTTISMLVGL 612 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~Gl 612 (1833)
+.++-|.-||||||+++.|...
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~ 23 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGA 23 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999899878999999999999
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=86.42 E-value=0.12 Score=23.93 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999946999975799998809999
Q 000224 591 ILALLGHNGAGKSTTISMLVGLIP 614 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~Gl~~ 614 (1833)
-.+|+|+-++||||++|.|+|.-.
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQKS 41 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899988999989999999858985
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=86.42 E-value=0.19 Score=22.49 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599996899999991998
Q 000224 1498 CFGFLGTNGAGKTTTLSMISGEE 1520 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G~~ 1520 (1833)
...|.||-||||||+.+.|+--+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=86.38 E-value=0.22 Score=22.10 Aligned_cols=20 Identities=40% Similarity=0.637 Sum_probs=11.7
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99946999975799998809
Q 000224 592 LALLGHNGAGKSTTISMLVG 611 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~G 611 (1833)
.+++|+.|+||||+++.+.+
T Consensus 19 I~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999899999999964
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=86.35 E-value=0.25 Score=21.78 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=13.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99994699997579999880999
Q 000224 591 ILALLGHNGAGKSTTISMLVGLI 613 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~Gl~ 613 (1833)
+.++-||-||||||..++|+--+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99978999879899999999996
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=86.22 E-value=0.25 Score=21.70 Aligned_cols=19 Identities=42% Similarity=0.629 Sum_probs=9.0
Q ss_pred EEECCCCCCHHHHHHHHCC
Q ss_conf 9946999975799998809
Q 000224 593 ALLGHNGAGKSTTISMLVG 611 (1833)
Q Consensus 593 ~LLG~NGAGKSTll~iL~G 611 (1833)
.++|+-||||||..+.|+-
T Consensus 4 ~i~G~pGSGKsT~a~~La~ 22 (182)
T d1s3ga1 4 VLMGLPGAGKGTQADRIVE 22 (182)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
T ss_conf 9988999987999999999
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.15 E-value=0.18 Score=22.75 Aligned_cols=20 Identities=15% Similarity=0.426 Sum_probs=14.8
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99946999975799998809
Q 000224 592 LALLGHNGAGKSTTISMLVG 611 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~G 611 (1833)
.+++|+.|+||||+++-+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999198999999973
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=86.11 E-value=0.29 Score=21.28 Aligned_cols=28 Identities=29% Similarity=0.269 Sum_probs=20.7
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8478099994699997579999880999
Q 000224 586 LYENQILALLGHNGAGKSTTISMLVGLI 613 (1833)
Q Consensus 586 i~~Gei~~LLG~NGAGKSTll~iL~Gl~ 613 (1833)
..+|.++.|-|+=||||||+.+-++.-+
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 7998299996687765889999987642
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.11 E-value=0.52 Score=19.59 Aligned_cols=31 Identities=19% Similarity=0.239 Sum_probs=22.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC-----CCCCCEEEE
Q ss_conf 9999959999689999999199-----889950799
Q 000224 1498 CFGFLGTNGAGKTTTLSMISGE-----EYPTDGTAF 1528 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G~-----~~p~~G~i~ 1528 (1833)
-+.++|..|+||||+++-+++. ..|+.|...
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~ 42 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY 42 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCE
T ss_conf 899999999799999999973998854576645200
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.11 E-value=0.54 Score=19.46 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=21.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC-----CCCCCEE
Q ss_conf 999959999689999999199-----8899507
Q 000224 1499 FGFLGTNGAGKTTTLSMISGE-----EYPTDGT 1526 (1833)
Q Consensus 1499 ~gllG~NGAGKTTll~~l~G~-----~~p~~G~ 1526 (1833)
+.++|..|+||||+++-+++. ..||-|.
T Consensus 5 i~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~ 37 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKGTFRESYIPTVED 37 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 999998997989999999709998763761331
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=86.10 E-value=0.3 Score=21.24 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=13.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999689999999199
Q 000224 1498 CFGFLGTNGAGKTTTLSMISGE 1519 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G~ 1519 (1833)
|.++.||-||||+|.-+.|+-.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~ 26 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEA 26 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8997799988989999999999
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.04 E-value=0.28 Score=21.37 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599996899999991998
Q 000224 1499 FGFLGTNGAGKTTTLSMISGEE 1520 (1833)
Q Consensus 1499 ~gllG~NGAGKTTll~~l~G~~ 1520 (1833)
+.++|+.|+||||+++.+++..
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999969899999997098
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=85.99 E-value=0.22 Score=22.06 Aligned_cols=42 Identities=21% Similarity=0.272 Sum_probs=31.0
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCC-CCCEEEEECCEE
Q ss_conf 975881999995999968999999919988-995079996850
Q 000224 1492 SVQAGECFGFLGTNGAGKTTTLSMISGEEY-PTDGTAFIFGKD 1533 (1833)
Q Consensus 1492 ~v~~Gei~gllG~NGAGKTTll~~l~G~~~-p~~G~i~i~G~~ 1533 (1833)
.++.|.++-+-||.|+||||+.-.++.... +..--++++...
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9667358998057774789999999999870898799986544
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.99 E-value=0.27 Score=21.58 Aligned_cols=19 Identities=42% Similarity=0.651 Sum_probs=9.6
Q ss_pred EEECCCCCCHHHHHHHHCC
Q ss_conf 9946999975799998809
Q 000224 593 ALLGHNGAGKSTTISMLVG 611 (1833)
Q Consensus 593 ~LLG~NGAGKSTll~iL~G 611 (1833)
.|+|+-||||||..+.|+-
T Consensus 4 ~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 4 VLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
T ss_conf 9988999998999999999
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.98 E-value=0.29 Score=21.35 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=21.3
Q ss_pred EEEECCCCCCHHHHHHHHCCCCC-CC
Q ss_conf 99946999975799998809999-99
Q 000224 592 LALLGHNGAGKSTTISMLVGLIP-PT 616 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~Gl~~-pt 616 (1833)
.+++|+-.|||||++|.|.|.-- |+
T Consensus 29 ivvvG~~SsGKSsliNaLlg~~~lP~ 54 (299)
T d2akab1 29 IAVVGGQSAGKSSVLENFVGRDFLPR 54 (299)
T ss_dssp EEEEEBTTSCHHHHHHHHHTSCCSCC
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 99976898979999999968986887
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.98 E-value=0.26 Score=21.61 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=15.0
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999469999757999988099
Q 000224 592 LALLGHNGAGKSTTISMLVGL 612 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~Gl 612 (1833)
.+++|+.|+||||+++-+++-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999619
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.85 E-value=0.43 Score=20.14 Aligned_cols=23 Identities=35% Similarity=0.674 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 99946999975799998809999
Q 000224 592 LALLGHNGAGKSTTISMLVGLIP 614 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~Gl~~ 614 (1833)
++++|..|+||||+++.+++...
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99999899299999999972867
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.83 E-value=0.26 Score=21.64 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599996899999991998
Q 000224 1499 FGFLGTNGAGKTTTLSMISGEE 1520 (1833)
Q Consensus 1499 ~gllG~NGAGKTTll~~l~G~~ 1520 (1833)
+.++|+.|+||||+++.+.+..
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~~ 28 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRNE 28 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999909899999998299
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=85.71 E-value=0.28 Score=21.38 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 99946999975799998809999
Q 000224 592 LALLGHNGAGKSTTISMLVGLIP 614 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~Gl~~ 614 (1833)
+||+|-=.+||||++|.|||.-+
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~~ 25 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVDV 25 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC---
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 76889999989999999978897
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=85.66 E-value=0.33 Score=20.95 Aligned_cols=24 Identities=33% Similarity=0.340 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHH---CCCCCC
Q ss_conf 999469999757999988---099999
Q 000224 592 LALLGHNGAGKSTTISML---VGLIPP 615 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL---~Gl~~p 615 (1833)
++.+||-.+|||||++.| +|.+.+
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~~g~i~~ 38 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHDSKMIYE 38 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCC--
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCH
T ss_conf 999937898989999999998698356
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=85.57 E-value=0.13 Score=23.76 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=8.4
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999599996899999991
Q 000224 1498 CFGFLGTNGAGKTTTLSMIS 1517 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~ 1517 (1833)
+.|+-|+.||||||+.+.|.
T Consensus 6 IIgIaG~SGSGKTTva~~l~ 25 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFD 25 (288)
T ss_dssp EEEEESCC---CCTHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998999780999999999
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=85.51 E-value=0.051 Score=26.41 Aligned_cols=20 Identities=30% Similarity=0.596 Sum_probs=10.9
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99946999975799998809
Q 000224 592 LALLGHNGAGKSTTISMLVG 611 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~G 611 (1833)
.+|+|+-|+||||+++.|+|
T Consensus 3 I~liG~~n~GKSSLin~l~g 22 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLN 22 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999999999999958
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.39 E-value=0.23 Score=21.97 Aligned_cols=27 Identities=37% Similarity=0.475 Sum_probs=12.6
Q ss_pred EEEECCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 999469999757999988099999951
Q 000224 592 LALLGHNGAGKSTTISMLVGLIPPTTG 618 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~Gl~~ptsG 618 (1833)
+.|||..|+||||+++-+.....||.|
T Consensus 5 ivllG~~~vGKTsl~~r~~~~~~~t~~ 31 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKIIHEAGTG 31 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHSCCCS
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999999998889999988408979724
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=85.37 E-value=0.19 Score=22.58 Aligned_cols=20 Identities=40% Similarity=0.579 Sum_probs=11.2
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99946999975799998809
Q 000224 592 LALLGHNGAGKSTTISMLVG 611 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~G 611 (1833)
.+++|..|+||||+++-+.+
T Consensus 20 I~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999988999988733
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.30 E-value=0.27 Score=21.47 Aligned_cols=20 Identities=35% Similarity=0.577 Sum_probs=14.0
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99946999975799998809
Q 000224 592 LALLGHNGAGKSTTISMLVG 611 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~G 611 (1833)
++++|..|+||||+++.+++
T Consensus 6 i~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999799899999999980
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.21 E-value=0.44 Score=20.09 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=23.8
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 884780999946999975799998809
Q 000224 585 TLYENQILALLGHNGAGKSTTISMLVG 611 (1833)
Q Consensus 585 ~i~~Gei~~LLG~NGAGKSTll~iL~G 611 (1833)
.+++|+++-+.|+.|+||||+..-++-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 986996999983899988999999999
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.13 E-value=0.37 Score=20.58 Aligned_cols=20 Identities=35% Similarity=0.511 Sum_probs=14.6
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99946999975799998809
Q 000224 592 LALLGHNGAGKSTTISMLVG 611 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~G 611 (1833)
++++|..|+||||+++.+++
T Consensus 7 v~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 7 IAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899298999999971
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.12 E-value=0.31 Score=21.11 Aligned_cols=21 Identities=38% Similarity=0.640 Sum_probs=12.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959999689999999199
Q 000224 1499 FGFLGTNGAGKTTTLSMISGE 1519 (1833)
Q Consensus 1499 ~gllG~NGAGKTTll~~l~G~ 1519 (1833)
+-|-||.|.||||+.+.++..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999849999999999
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.03 E-value=0.35 Score=20.75 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999968999999919988
Q 000224 1498 CFGFLGTNGAGKTTTLSMISGEEY 1521 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G~~~ 1521 (1833)
+..+-|+-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989987899999999999998
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=84.90 E-value=0.29 Score=21.31 Aligned_cols=18 Identities=39% Similarity=0.396 Sum_probs=9.3
Q ss_pred EEECCCCCCHHHHHHHHH
Q ss_conf 999599996899999991
Q 000224 1500 GFLGTNGAGKTTTLSMIS 1517 (1833)
Q Consensus 1500 gllG~NGAGKTTll~~l~ 1517 (1833)
.++||-||||||..+.|+
T Consensus 4 ~i~G~pGSGKsT~~~~La 21 (179)
T d1e4va1 4 ILLGAPVAGKGTQAQFIM 21 (179)
T ss_dssp EEEESTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
T ss_conf 998799999899999999
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.90 E-value=0.38 Score=20.55 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=13.9
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 7588199999599996899999991
Q 000224 1493 VQAGECFGFLGTNGAGKTTTLSMIS 1517 (1833)
Q Consensus 1493 v~~Gei~gllG~NGAGKTTll~~l~ 1517 (1833)
+++|+++-+.|+.|+|||++...++
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 7689799998899887889999999
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.89 E-value=0.31 Score=21.09 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=14.8
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999469999757999988099
Q 000224 592 LALLGHNGAGKSTTISMLVGL 612 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~Gl 612 (1833)
.+++|..|+||||+++.+++-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999996789999999868
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=84.85 E-value=0.33 Score=20.95 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=20.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 819999959999689999999199
Q 000224 1496 GECFGFLGTNGAGKTTTLSMISGE 1519 (1833)
Q Consensus 1496 Gei~gllG~NGAGKTTll~~l~G~ 1519 (1833)
.-+.|+.||-||||||++.-|...
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 159861179988899999999998
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.80 E-value=0.33 Score=20.92 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999689999999199
Q 000224 1498 CFGFLGTNGAGKTTTLSMISGE 1519 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G~ 1519 (1833)
.+.++|..|+||||+++.+++.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.79 E-value=0.35 Score=20.79 Aligned_cols=119 Identities=22% Similarity=0.248 Sum_probs=59.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHH-------
Q ss_conf 9999959999689999999199889950799968508999687604429980589879899999999999997-------
Q 000224 1498 CFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARI------- 1570 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~ig~~pQ~~~l~~~ltv~e~l~~~~~l------- 1570 (1833)
++||-|+-|+||||+-+.|.-.+... ......+..++.|+- | +|-.|...+-...
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~---------------~~~~~~v~~iS~Ddf-Y--~t~~~r~~L~~~~~~~pl~~ 90 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEK---------------YGGEKSIGYASIDDF-Y--LTHEDQLKLNEQFKNNKLLQ 90 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHH---------------HGGGSCEEEEEGGGG-B--CCHHHHHHHHHHTTTCGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH---------------HCCCCCEEEECCCCC-C--CCHHHHHHHHHHCCCCCCCE
T ss_conf 99837998788999999999999987---------------277860676356777-7--88899999852135553110
Q ss_pred -CCCCHHHHHHHHHHHHHHCCC-CC-----CCCCCCCCCCH--HHHHHHHHHHHHHCCCCEEEEECCCCCCCH
Q ss_conf -099905599999999987499-62-----01889899894--699999999999069998999387899899
Q 000224 1571 -KGVAEYRMDDVVMEKLVEFDL-LK-----HAKKPSFTLSG--GNKRKLSVAIAMIGDPPIVILDEPSTGMDP 1634 (1833)
Q Consensus 1571 -~g~~~~~~~~~v~~~l~~~~L-~~-----~~~~~~~~lSg--G~krrl~iA~al~~~p~illLDEPt~GlDp 1634 (1833)
||.|....-+...+.+..+-- .+ -..-|.-.-|- |..-|..-...+.+.|+|+|+.-=..|.-|
T Consensus 91 ~RG~PgThD~~ll~~~l~~l~~~~~~~~~~~v~iP~fDk~~~~~~~Dr~~~~~~i~~~~dviI~EGWcvG~~p 163 (286)
T d1odfa_ 91 GRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNP 163 (286)
T ss_dssp SSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCC
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCEECCCCCEEEEECHHHCCCC
T ss_conf 0478740348899999999974023124566668846777515532237655200589878997002204541
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.76 E-value=0.32 Score=21.03 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 99946999975799998809999
Q 000224 592 LALLGHNGAGKSTTISMLVGLIP 614 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~Gl~~ 614 (1833)
++++|..|+||||+++.+.+...
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989899399999999818856
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=84.68 E-value=0.65 Score=18.95 Aligned_cols=42 Identities=14% Similarity=0.213 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHH
Q ss_conf 9998999387899899999999999999874169969999637788
Q 000224 1619 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMN 1664 (1833)
Q Consensus 1619 ~p~illLDEPt~GlDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~ 1664 (1833)
+.+|+++|| .-.|...+...+.++|.+-. +++.++++|++.+
T Consensus 79 ~~KviIId~-ad~l~~~aqNaLLK~LEEPp---~~t~fiLit~~~~ 120 (198)
T d2gnoa2 79 TRKYVIVHD-CERMTQQAANAFLKALEEPP---EYAVIVLNTRRWH 120 (198)
T ss_dssp SSEEEEETT-GGGBCHHHHHHTHHHHHSCC---TTEEEEEEESCGG
T ss_pred CCEEEEEEC-CCCCCHHHHHHHHHHHHCCC---CCCEEEECCCCHH
T ss_conf 987999947-31036666647888773789---8852222069956
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.67 E-value=0.35 Score=20.76 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959999689999999199
Q 000224 1499 FGFLGTNGAGKTTTLSMISGE 1519 (1833)
Q Consensus 1499 ~gllG~NGAGKTTll~~l~G~ 1519 (1833)
+.++|..|+||||+++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999739
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.59 E-value=0.53 Score=19.53 Aligned_cols=20 Identities=40% Similarity=0.659 Sum_probs=14.5
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99946999975799998809
Q 000224 592 LALLGHNGAGKSTTISMLVG 611 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~G 611 (1833)
++++|..|+||||+++-+.+
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899499999999973
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.57 E-value=0.43 Score=20.16 Aligned_cols=20 Identities=40% Similarity=0.655 Sum_probs=13.1
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99946999975799998809
Q 000224 592 LALLGHNGAGKSTTISMLVG 611 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~G 611 (1833)
.+++|..|+||||+++.+++
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999799999999984
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=84.57 E-value=0.38 Score=20.53 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599996899999991998
Q 000224 1498 CFGFLGTNGAGKTTTLSMISGEE 1520 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G~~ 1520 (1833)
+.++-||-||||||.-+.|+-.+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99978999879899999999996
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.51 E-value=0.31 Score=21.14 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9994699997579999880999
Q 000224 592 LALLGHNGAGKSTTISMLVGLI 613 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~Gl~ 613 (1833)
..|-||.|+||||+.+.++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=84.49 E-value=0.24 Score=21.89 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9994699997579999880999
Q 000224 592 LALLGHNGAGKSTTISMLVGLI 613 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~Gl~ 613 (1833)
.|++||-++|||||.+.|++..
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~~ 27 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKIL 27 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999588980999999999999
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=84.44 E-value=0.33 Score=20.92 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999968999999919988
Q 000224 1498 CFGFLGTNGAGKTTTLSMISGEEY 1521 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G~~~ 1521 (1833)
-+.++|+.|+||||+++.+.+...
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~~ 41 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASEDI 41 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999899999999964877
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=84.41 E-value=0.35 Score=20.78 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=16.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99994699997579999880999
Q 000224 591 ILALLGHNGAGKSTTISMLVGLI 613 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~Gl~ 613 (1833)
.+.|+||-|.|||.+.+.|+...
T Consensus 51 ~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 51 NILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 69998999988889999986213
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.39 E-value=0.31 Score=21.16 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599996899999991998
Q 000224 1499 FGFLGTNGAGKTTTLSMISGEE 1520 (1833)
Q Consensus 1499 ~gllG~NGAGKTTll~~l~G~~ 1520 (1833)
+.++|..|+||||+++.+++..
T Consensus 5 i~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999967899999998688
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=84.33 E-value=0.35 Score=20.72 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=16.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHC
Q ss_conf 8099994699997579999880
Q 000224 589 NQILALLGHNGAGKSTTISMLV 610 (1833)
Q Consensus 589 Gei~~LLG~NGAGKSTll~iL~ 610 (1833)
+.++.+.|+.|+||||+++-++
T Consensus 29 ~~~i~i~G~~G~GKTsLl~~~~ 50 (283)
T d2fnaa2 29 APITLVLGLRRTGKSSIIKIGI 50 (283)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 9879998699982999999999
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.30 E-value=0.33 Score=20.97 Aligned_cols=20 Identities=45% Similarity=0.584 Sum_probs=11.0
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99946999975799998809
Q 000224 592 LALLGHNGAGKSTTISMLVG 611 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~G 611 (1833)
.+++|+-||||||..+.|+-
T Consensus 3 I~i~G~pGsGKsT~a~~La~ 22 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAE 22 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99988999997999999999
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=84.20 E-value=0.45 Score=19.99 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99995999968999999919988
Q 000224 1499 FGFLGTNGAGKTTTLSMISGEEY 1521 (1833)
Q Consensus 1499 ~gllG~NGAGKTTll~~l~G~~~ 1521 (1833)
+|++|+=.||||||++.|+|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99993458849999999970344
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.12 E-value=0.68 Score=18.79 Aligned_cols=20 Identities=35% Similarity=0.654 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99946999975799998809
Q 000224 592 LALLGHNGAGKSTTISMLVG 611 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~G 611 (1833)
.+++|+.|+|||++++-+.+
T Consensus 5 i~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899789999999973
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=83.96 E-value=0.44 Score=20.09 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=20.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 819999959999689999999199
Q 000224 1496 GECFGFLGTNGAGKTTTLSMISGE 1519 (1833)
Q Consensus 1496 Gei~gllG~NGAGKTTll~~l~G~ 1519 (1833)
+.++.+.||-|.||||+++.++-.
T Consensus 29 ~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 29 APITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 987999869998299999999997
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=83.92 E-value=0.69 Score=18.77 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999946999975799998809999
Q 000224 591 ILALLGHNGAGKSTTISMLVGLIP 614 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~Gl~~ 614 (1833)
-+||+|-=.+||||+++.||+--+
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~~ 27 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAGI 27 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 488889999988999999977997
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=83.88 E-value=0.42 Score=20.19 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=10.7
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99994699997579999880
Q 000224 591 ILALLGHNGAGKSTTISMLV 610 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~ 610 (1833)
|.||.|.-||||||..++|.
T Consensus 3 iIgiTG~igSGKsTva~~l~ 22 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIM 22 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99997999988999999999
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=83.80 E-value=0.39 Score=20.42 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=22.3
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 97588199999599996899999991
Q 000224 1492 SVQAGECFGFLGTNGAGKTTTLSMIS 1517 (1833)
Q Consensus 1492 ~v~~Gei~gllG~NGAGKTTll~~l~ 1517 (1833)
.+++|+++-+.|+.|+||||+.--++
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 95588799998589898899999999
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.73 E-value=0.55 Score=19.45 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99995999968999999919988
Q 000224 1499 FGFLGTNGAGKTTTLSMISGEEY 1521 (1833)
Q Consensus 1499 ~gllG~NGAGKTTll~~l~G~~~ 1521 (1833)
+.++|+.|+||||+++.+.+...
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~~~ 30 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDNKF 30 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCSCC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999198999999961999
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=83.64 E-value=0.24 Score=21.85 Aligned_cols=22 Identities=45% Similarity=0.516 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599996899999991998
Q 000224 1499 FGFLGTNGAGKTTTLSMISGEE 1520 (1833)
Q Consensus 1499 ~gllG~NGAGKTTll~~l~G~~ 1520 (1833)
+.++|+.|+||||+++.+.+..
T Consensus 20 I~lvG~~~vGKTsLi~~l~~~~ 41 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQIGE 41 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCCSE
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999998899998873387
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=83.56 E-value=0.44 Score=20.06 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599996899999991998
Q 000224 1498 CFGFLGTNGAGKTTTLSMISGEE 1520 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G~~ 1520 (1833)
...|+||-||||||..+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.52 E-value=0.32 Score=21.00 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=10.8
Q ss_pred EEECCCCCCHHHHHHHHHCC
Q ss_conf 99959999689999999199
Q 000224 1500 GFLGTNGAGKTTTLSMISGE 1519 (1833)
Q Consensus 1500 gllG~NGAGKTTll~~l~G~ 1519 (1833)
-|.||.|+||||+.++++..
T Consensus 40 ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 40 IISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp EEECSTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHH
T ss_conf 99889998705469999999
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.50 E-value=0.37 Score=20.57 Aligned_cols=29 Identities=21% Similarity=0.277 Sum_probs=24.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCEEE
Q ss_conf 99995999968999999919988995079
Q 000224 1499 FGFLGTNGAGKTTTLSMISGEEYPTDGTA 1527 (1833)
Q Consensus 1499 ~gllG~NGAGKTTll~~l~G~~~p~~G~i 1527 (1833)
+.++|..|+||||+++.+.....|+.|..
T Consensus 5 ivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCEE
T ss_conf 99999999888999998840897972479
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.42 E-value=0.63 Score=19.05 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=12.8
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99946999975799998809
Q 000224 592 LALLGHNGAGKSTTISMLVG 611 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~G 611 (1833)
++++|..|+||||+++-+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899598999999970
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.30 E-value=0.46 Score=19.94 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599996899999991998
Q 000224 1499 FGFLGTNGAGKTTTLSMISGEE 1520 (1833)
Q Consensus 1499 ~gllG~NGAGKTTll~~l~G~~ 1520 (1833)
..|+||-||||||..+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899999899999999987
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=83.17 E-value=0.74 Score=18.54 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=13.6
Q ss_pred EEEECCCCCCHHHHHHHHC
Q ss_conf 9994699997579999880
Q 000224 592 LALLGHNGAGKSTTISMLV 610 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~ 610 (1833)
.+++|.-|+||||+++-++
T Consensus 7 ivlvG~~~vGKTsli~~~~ 25 (168)
T d1u8za_ 7 VIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999989958899999997
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=83.15 E-value=0.36 Score=20.66 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCC
Q ss_conf 9999469999757999988099999
Q 000224 591 ILALLGHNGAGKSTTISMLVGLIPP 615 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~Gl~~p 615 (1833)
-.||+|-=.+||||+++.||+--.|
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~~~~ 36 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKSVLG 36 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHSTTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 7999789999899999999778987
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.12 E-value=0.39 Score=20.47 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.1
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099994699997579999880999
Q 000224 590 QILALLGHNGAGKSTTISMLVGLI 613 (1833)
Q Consensus 590 ei~~LLG~NGAGKSTll~iL~Gl~ 613 (1833)
-+++++|+-++||||++|.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 999988999997999999980998
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=82.99 E-value=0.4 Score=20.39 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=14.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999469999757999988099
Q 000224 591 ILALLGHNGAGKSTTISMLVGL 612 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~Gl 612 (1833)
..+|+|+-||||||..+.|+--
T Consensus 8 rIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 6999889999879999999999
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.93 E-value=0.44 Score=20.08 Aligned_cols=19 Identities=26% Similarity=0.539 Sum_probs=12.4
Q ss_pred EEEECCCCCCHHHHHHHHC
Q ss_conf 9994699997579999880
Q 000224 592 LALLGHNGAGKSTTISMLV 610 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~ 610 (1833)
++++|..|+||||+++-++
T Consensus 5 v~liG~~~vGKSsLi~rl~ 23 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYC 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999989959899999998
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.90 E-value=0.31 Score=21.12 Aligned_cols=20 Identities=30% Similarity=0.669 Sum_probs=15.1
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99946999975799998809
Q 000224 592 LALLGHNGAGKSTTISMLVG 611 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~G 611 (1833)
.+++|..|+||||+++.+++
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999198999999971
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=82.86 E-value=0.76 Score=18.46 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=10.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHH
Q ss_conf 8819999959999689999999
Q 000224 1495 AGECFGFLGTNGAGKTTTLSMI 1516 (1833)
Q Consensus 1495 ~Gei~gllG~NGAGKTTll~~l 1516 (1833)
.|.-+-+.|+.|+||||+.-.+
T Consensus 14 ~g~gvli~G~sG~GKS~lal~l 35 (177)
T d1knxa2 14 FGVGVLLTGRSGIGKSECALDL 35 (177)
T ss_dssp TTEEEEEEESSSSSHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
T ss_conf 9999999818999989999999
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.78 E-value=0.46 Score=19.98 Aligned_cols=17 Identities=35% Similarity=0.604 Sum_probs=8.3
Q ss_pred EECCCCCCHHHHHHHHH
Q ss_conf 99599996899999991
Q 000224 1501 FLGTNGAGKTTTLSMIS 1517 (1833)
Q Consensus 1501 llG~NGAGKTTll~~l~ 1517 (1833)
++||-||||||..+.|+
T Consensus 7 l~G~pGSGKtT~a~~La 23 (180)
T d1akya1 7 LIGPPGAGKGTQAPNLQ 23 (180)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
T ss_conf 98999999899999999
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.75 E-value=0.77 Score=18.43 Aligned_cols=20 Identities=35% Similarity=0.571 Sum_probs=14.6
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99946999975799998809
Q 000224 592 LALLGHNGAGKSTTISMLVG 611 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~G 611 (1833)
++++|..|+||||+++-+++
T Consensus 6 i~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899399999999971
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=82.71 E-value=0.27 Score=21.54 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=13.2
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9994699997579999880999
Q 000224 592 LALLGHNGAGKSTTISMLVGLI 613 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~Gl~ 613 (1833)
+.++|..|+||||+++.+++-.
T Consensus 15 IvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 15 ILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999987899999984488
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=82.69 E-value=0.52 Score=19.57 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=23.2
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 478099994699997579999880999
Q 000224 587 YENQILALLGHNGAGKSTTISMLVGLI 613 (1833)
Q Consensus 587 ~~Gei~~LLG~NGAGKSTll~iL~Gl~ 613 (1833)
.++|...+.|.+|||||+..+++...+
T Consensus 84 ~~~QsIiisGeSGsGKTe~~k~il~yL 110 (684)
T d1lkxa_ 84 QENQCVIISGESGAGKTEASKKIMQFL 110 (684)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 898189997389899899999999999
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.62 E-value=0.78 Score=18.40 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=15.0
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999946999975799998809
Q 000224 591 ILALLGHNGAGKSTTISMLVG 611 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~G 611 (1833)
-++++|+.|+||||+++-+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899789999999971
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=82.56 E-value=0.43 Score=20.13 Aligned_cols=29 Identities=34% Similarity=0.344 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHH---HCCCCCCCEEE
Q ss_conf 9999959999689999999---19988995079
Q 000224 1498 CFGFLGTNGAGKTTTLSMI---SGEEYPTDGTA 1527 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l---~G~~~p~~G~i 1527 (1833)
-++++|+-|||||||...| +|.+.. .|++
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~-~g~v 39 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHK-IGEV 39 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC-----
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCCC-CCCE
T ss_conf 9999958989989999999996485340-2336
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.56 E-value=0.44 Score=20.06 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=13.9
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99946999975799998809
Q 000224 592 LALLGHNGAGKSTTISMLVG 611 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~G 611 (1833)
++++|..|+||||+++-+.+
T Consensus 7 ivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999498999999972
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=82.52 E-value=0.48 Score=19.85 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999469999757999988099
Q 000224 591 ILALLGHNGAGKSTTISMLVGL 612 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~Gl 612 (1833)
...++|+-||||||..+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999879999989999999998
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=82.48 E-value=0.27 Score=21.48 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=12.0
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9994699997579999880999
Q 000224 592 LALLGHNGAGKSTTISMLVGLI 613 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~Gl~ 613 (1833)
.-|.||.|.||||+.++++..+
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~ 59 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASEL 59 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 8987999973889999998503
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.43 E-value=0.47 Score=19.92 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99946999975799998809
Q 000224 592 LALLGHNGAGKSTTISMLVG 611 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~G 611 (1833)
++++|.-|+||||+++.+++
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999098999999961
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.39 E-value=0.42 Score=20.21 Aligned_cols=44 Identities=16% Similarity=0.225 Sum_probs=32.1
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
Q ss_conf 994999828889999999999999999983896999970797799
Q 000224 712 DSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEA 756 (1833)
Q Consensus 712 ~p~iliLDEPTsGLDp~srr~iw~~l~~~~~grtiiltTH~mdEa 756 (1833)
..+++++||.- +|...+...+...+........++++|+..+..
T Consensus 101 ~~kviiiDe~d-~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i 144 (224)
T d1sxjb2 101 KHKIVILDEAD-SMTAGAQQALRRTMELYSNSTRFAFACNQSNKI 144 (224)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CEEEEEEECCC-CCCHHHHHHHHHHCCCCCCCEEEEECCCCHHHH
T ss_conf 35999982443-232157787752011233333665314743021
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.36 E-value=0.65 Score=18.95 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=14.7
Q ss_pred EEEECCCCCCHHHHHHH-HCCCC
Q ss_conf 99946999975799998-80999
Q 000224 592 LALLGHNGAGKSTTISM-LVGLI 613 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~i-L~Gl~ 613 (1833)
.+++|+.|+||||+++- +.|..
T Consensus 9 i~vvG~~~vGKTsli~~~~~~~~ 31 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKDGAF 31 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99999999299999999971998
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=82.23 E-value=0.3 Score=21.24 Aligned_cols=24 Identities=33% Similarity=0.324 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 999959999689999999199889
Q 000224 1499 FGFLGTNGAGKTTTLSMISGEEYP 1522 (1833)
Q Consensus 1499 ~gllG~NGAGKTTll~~l~G~~~p 1522 (1833)
+.++|+.|+||||+++.+.+...+
T Consensus 15 IvlvG~~~vGKTSli~rl~~~~~~ 38 (173)
T d1e0sa_ 15 ILMLGLDAAGKTTILYKLKLGQSV 38 (173)
T ss_dssp EEEEEETTSSHHHHHHHTTCCCCE
T ss_pred EEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 999999998789999998448888
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=82.16 E-value=0.45 Score=20.02 Aligned_cols=23 Identities=30% Similarity=0.601 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHH---HCCC
Q ss_conf 9999959999689999999---1998
Q 000224 1498 CFGFLGTNGAGKTTTLSMI---SGEE 1520 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l---~G~~ 1520 (1833)
-++++|+-|+|||||...| +|..
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~ 29 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAK 29 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 99999488980999999999970975
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.01 E-value=0.42 Score=20.19 Aligned_cols=20 Identities=25% Similarity=0.594 Sum_probs=15.7
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99946999975799998809
Q 000224 592 LALLGHNGAGKSTTISMLVG 611 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~G 611 (1833)
++++|..|+||||+++.+++
T Consensus 8 i~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999198999999972
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.95 E-value=0.45 Score=20.03 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959999689999999199
Q 000224 1499 FGFLGTNGAGKTTTLSMISGE 1519 (1833)
Q Consensus 1499 ~gllG~NGAGKTTll~~l~G~ 1519 (1833)
+.++|+-|+||||+++.+++.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999619
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=81.90 E-value=0.74 Score=18.57 Aligned_cols=32 Identities=25% Similarity=0.199 Sum_probs=23.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 99994699997579999880999999515999
Q 000224 591 ILALLGHNGAGKSTTISMLVGLIPPTTGDALV 622 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i 622 (1833)
...+=|.-|+||||+++.|...+....+.+.+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~ 39 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99998886678999999999986569976998
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.86 E-value=0.35 Score=20.75 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=14.1
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99946999975799998809
Q 000224 592 LALLGHNGAGKSTTISMLVG 611 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~G 611 (1833)
.+++|..|+||||+++.+.+
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999399999999962
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.76 E-value=0.5 Score=19.70 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=14.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99994699997579999880999
Q 000224 591 ILALLGHNGAGKSTTISMLVGLI 613 (1833)
Q Consensus 591 i~~LLG~NGAGKSTll~iL~Gl~ 613 (1833)
+.++=|.-||||||++++|.-.+
T Consensus 4 ~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 4 RLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998998885999999999987
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.71 E-value=0.53 Score=19.53 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599996899999991998
Q 000224 1499 FGFLGTNGAGKTTTLSMISGEE 1520 (1833)
Q Consensus 1499 ~gllG~NGAGKTTll~~l~G~~ 1520 (1833)
+.++|..|+||||+++.+.+..
T Consensus 6 ivvvG~~~vGKTsli~r~~~~~ 27 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDKR 27 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999939999999996299
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=81.70 E-value=0.58 Score=19.26 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 1999995999968999999919
Q 000224 1497 ECFGFLGTNGAGKTTTLSMISG 1518 (1833)
Q Consensus 1497 ei~gllG~NGAGKTTll~~l~G 1518 (1833)
.+.||.|.-||||||..++|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999979999889999999998
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=81.55 E-value=0.54 Score=19.48 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599996899999991998
Q 000224 1498 CFGFLGTNGAGKTTTLSMISGEE 1520 (1833)
Q Consensus 1498 i~gllG~NGAGKTTll~~l~G~~ 1520 (1833)
...|+||-||||||.-+.|+-.+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 69998899998799999999997
|
| >d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=81.52 E-value=0.62 Score=19.07 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=23.7
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 4780999946999975799998809999
Q 000224 587 YENQILALLGHNGAGKSTTISMLVGLIP 614 (1833)
Q Consensus 587 ~~Gei~~LLG~NGAGKSTll~iL~Gl~~ 614 (1833)
.++|...+.|.+|||||+..+++...+.
T Consensus 89 ~~~Q~IiisGeSGaGKTe~~k~il~yL~ 116 (710)
T d1br2a2 89 REDQSILCTGESGAGKTENTKKVIQYLA 116 (710)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 8991799971898888999999999999
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=81.30 E-value=0.38 Score=20.49 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHH---CCCCC
Q ss_conf 999469999757999988---09999
Q 000224 592 LALLGHNGAGKSTTISML---VGLIP 614 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL---~Gl~~ 614 (1833)
++++||-++|||||+.-| +|.+.
T Consensus 27 i~iiGHVD~GKSTL~~~Ll~~~g~i~ 52 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNILFLTGMVD 52 (245)
T ss_dssp EEEEECGGGTHHHHHHHHHHHTTSSC
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCCC
T ss_conf 99995279899999999999849945
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.16 E-value=0.57 Score=19.33 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599996899999991998
Q 000224 1499 FGFLGTNGAGKTTTLSMISGEE 1520 (1833)
Q Consensus 1499 ~gllG~NGAGKTTll~~l~G~~ 1520 (1833)
..|+||-||||||.-+.|+--+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899999799999999998
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.97 E-value=0.39 Score=20.42 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=27.3
Q ss_pred CCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 101323588847809999469999757999988099
Q 000224 577 CAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGL 612 (1833)
Q Consensus 577 ~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl 612 (1833)
.|+| .-+.+-+||..++.|+.|.||||++..++--
T Consensus 57 raID-~l~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 57 KVVD-LLAPYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp HHHH-HHSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEE-EECCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 2031-0256367887776679998989999999998
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=80.93 E-value=0.51 Score=19.67 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99995999968999999919988
Q 000224 1499 FGFLGTNGAGKTTTLSMISGEEY 1521 (1833)
Q Consensus 1499 ~gllG~NGAGKTTll~~l~G~~~ 1521 (1833)
+||+|.-.+||||+|+.|||-..
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~~ 25 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVDV 25 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC---
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 76889999989999999978897
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.89 E-value=0.45 Score=20.01 Aligned_cols=44 Identities=18% Similarity=0.239 Sum_probs=33.2
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHH
Q ss_conf 899499982888999999999999999998389699997079779
Q 000224 711 GDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDE 755 (1833)
Q Consensus 711 g~p~iliLDEPTsGLDp~srr~iw~~l~~~~~grtiiltTH~mdE 755 (1833)
++.+++++||.- .|.+.....++..|.+......++++|+..+.
T Consensus 98 ~~~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ 141 (227)
T d1sxjc2 98 KGFKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHK 141 (227)
T ss_dssp CSCEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CCEEEEEEECCC-CCHHHHHHHHHHHHHHCCCCEEECCCCCCHHH
T ss_conf 771899996632-00023789999886311200232012670877
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.85 E-value=0.57 Score=19.34 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959999689999999199
Q 000224 1499 FGFLGTNGAGKTTTLSMISGE 1519 (1833)
Q Consensus 1499 ~gllG~NGAGKTTll~~l~G~ 1519 (1833)
+.++|..|+||||+++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999729
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.80 E-value=0.14 Score=23.40 Aligned_cols=133 Identities=20% Similarity=0.273 Sum_probs=62.9
Q ss_pred EEEECCCCCCHHHHHHHH---CCCCCC-CCCEEEECCCCCCCCHHHHHCCEEEECCCCCC-CCCCCHHHHHHHHHHHCCC
Q ss_conf 999469999757999988---099999-95159996712782178860446998268988-9999999999999996099
Q 000224 592 LALLGHNGAGKSTTISML---VGLIPP-TTGDALVFGKNITADMDEIRKGLGVCPQYDIL-FPELTVREHLEMFAVLKGV 666 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL---~Gl~~p-tsG~v~i~G~di~~~~~~~r~~iG~cpQ~~~L-~~~LTv~EhL~~~~~lkg~ 666 (1833)
+|++||-|+|||||+..| +|.+.. .+|+...- .+..++..+.+.+=...-.+ |+. + .+..
T Consensus 20 I~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~----D~~~~E~eRgiTi~~~~~~l~~~~-~-~~~~--------- 84 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFT----DTRKDEQERGITIKSTAISLYSEM-S-DEDV--------- 84 (341)
T ss_dssp EEEECCGGGTHHHHHHHHHHHHBCCBC----------------------CCCBCCCEEEEEEEC-C-HHHH---------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC----CCCHHHHHCCCEEECCEEEEEECC-C-CCCC---------
T ss_conf 999968888699999999997798663556323224----464567756836967878999426-7-6554---------
Q ss_pred CHHHHHHHHHHHHHHCC----CCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 97889999999999839----9830063237-889568999999999718994999828889999999999999999983
Q 000224 667 KEELLESVVAEMVDEVG----LADKVNIVVR-ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK 741 (1833)
Q Consensus 667 ~~~~~~~~v~~~l~~l~----L~~~~~~~~~-~LSGG~KrkLsiA~Alig~p~iliLDEPTsGLDp~srr~iw~~l~~~~ 741 (1833)
.......+ +-...|++.. .+++-..+-+.+ .|--+++.| ...|+-+.+++.+..+. +
T Consensus 85 ---------~~~~~~~~~~~~~inliDtPGh~dF~~ev~~al~~-----~D~allVVd-a~eGv~~qT~~~~~~a~---~ 146 (341)
T d1n0ua2 85 ---------KEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRV-----TDGALVVVD-TIEGVCVQTETVLRQAL---G 146 (341)
T ss_dssp ---------HHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHT-----CSEEEEEEE-TTTBSCHHHHHHHHHHH---H
T ss_pred ---------CCHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHH-----CCCEEEEEE-CCCCCCHHHHHHHHHHH---H
T ss_conf ---------20100235665379997378738899999988752-----372499986-56682046999999998---7
Q ss_pred CCCEEEEECCCHHHHH
Q ss_conf 8969999707977998
Q 000224 742 KGRIILLTTHSMDEAE 757 (1833)
Q Consensus 742 ~grtiiltTH~mdEad 757 (1833)
.+..+++.-..||..-
T Consensus 147 ~~~p~i~viNKiDr~~ 162 (341)
T d1n0ua2 147 ERIKPVVVINKVDRAL 162 (341)
T ss_dssp TTCEEEEEEECHHHHH
T ss_pred CCCCEEEEEECCCCCC
T ss_conf 6998699987726555
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.70 E-value=0.41 Score=20.28 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=13.0
Q ss_pred EEEECCCCCCHHHHHHHHC
Q ss_conf 9994699997579999880
Q 000224 592 LALLGHNGAGKSTTISMLV 610 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~ 610 (1833)
++++|..|+||||+++-+.
T Consensus 6 ivlvG~~~vGKTsLi~r~~ 24 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYC 24 (167)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999999939899999998
|
| >d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=80.63 E-value=0.7 Score=18.74 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=24.0
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 4780999946999975799998809999
Q 000224 587 YENQILALLGHNGAGKSTTISMLVGLIP 614 (1833)
Q Consensus 587 ~~Gei~~LLG~NGAGKSTll~iL~Gl~~ 614 (1833)
.++|...+.|.+|||||+..+++...+.
T Consensus 123 ~~nQsIiisGeSGaGKTe~~k~il~yL~ 150 (712)
T d1d0xa2 123 RQNQSLLITGESGAGKTENTKKVIQYLA 150 (712)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8991699967998888999999999999
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.45 E-value=0.39 Score=20.43 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=14.4
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999469999757999988099
Q 000224 592 LALLGHNGAGKSTTISMLVGL 612 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~Gl 612 (1833)
++++|..|+||||+++-+++-
T Consensus 6 i~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC--
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990889999999849
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=80.34 E-value=0.55 Score=19.42 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 9999599996899999991998899
Q 000224 1499 FGFLGTNGAGKTTTLSMISGEEYPT 1523 (1833)
Q Consensus 1499 ~gllG~NGAGKTTll~~l~G~~~p~ 1523 (1833)
+-|.||.|.||||+.+.++..+...
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~~ 62 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQTN 62 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 8987999973889999998503888
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.30 E-value=0.57 Score=19.32 Aligned_cols=27 Identities=37% Similarity=0.539 Sum_probs=16.3
Q ss_pred EEEECCCCCCHHHHHHHHCCC--CCCCCC
Q ss_conf 999469999757999988099--999951
Q 000224 592 LALLGHNGAGKSTTISMLVGL--IPPTTG 618 (1833)
Q Consensus 592 ~~LLG~NGAGKSTll~iL~Gl--~~ptsG 618 (1833)
..+||..|+||||+++.+.-. ..||-|
T Consensus 5 ivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCEEE
T ss_conf 99998999998999998846898887241
|