Citrus Sinensis ID: 000244

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------1590------1600------1610------1620------1630------1640------1650------1660------1670------1680------1690------1700------1710------1720------1730------1740------1750------1760------1770------1780------1790------180

MWQLMPETDGSSHHLLHVPLKDSPLSDCGGLCGDLDVQIELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSILLTVAEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTRVAGHTQVSSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVARWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRILKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPVNERKVIQTAAQADRSPGRIRVTPVTVANGQTIRIAAVGISSSGEAFANSSSLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGHHSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVDWIKIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFPEGDVFSFYELCRNYNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSCDFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPSSSESHGQWDSQSHKGSIVYSLLKFCSEKNEAASKDDISIDGDTIKTTSSNHLACIQAKDRSSGRIEIASCVRVAEVAQIRISNRYPLNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHDVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVSVGAQLYPQNPVLHVGGSLDFSVEGFSDQVSGHWFSDNESVVHVHMPSGKAEAVGIGSTKVFFECPSMKLQTTVTVLSKNIVSIDAPKEVLTNIPYPTKGYTFAVRFGDTHKLKALENKAISYDCEADPPFVGYAKPWMDLDTGNLYCLFFPYSPEHLLRSVPKSKDTSPFISVSVNASLREAHRISGSASASALFVGGFSILEMDKSSLQLNLTSDSNKTTITILGNTGVEIHWQNQDLLKISPVHKEDIGIGGHAQYEVSVLRTKKFKDKIIFTLPANGQRVEVDVNFEPGQREESNRIFASFIGFFAVFSLIVVFSIAILDGRKRSTRSQPSVSPATPYATAPGTPEHSIPTVSNEQSPRTPQPFVDYVRRTIDETPNYRREARRRFNVQNTF

ccEEcccccccccEEEEEEEcccccccccccccccHHHHHHHHccccccEEEEEEEEEEEEEEEEEEcccccccccccEEEEEEEEEEEcccccEEEEEccEEEEEEEEEEccccEEEEcccccEEEEEEcccEEEEEccccEEEEEEEccEEEEEEEccccccccEEEEEEEcccEEEEEEEEccccccccccEEEcccccEEEEEEcEEEEEEEEEEcccccccEEEEcccccEEEEcccccEEEEEEccccEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEccEEccEEEEEEEEEEEEEEEEEEEEccccccccEEEccccccccEEEEEEEEcccccccccEEEEEcccEEEEEcccEEEEEccccEEEEEEEEccccccEEEEEEEEEcccEEEEEccEEEEEEcccEEEEEEEEEEccccEEEEEcccccEEEEEEccccEEEEccccccccccccccccccccccccccEEEEEEEEEEEEEEEEEEEEEEcccccccccccEEEEEEEEEEEccccEEEccccccccccEEEEcccccccccccccEEEEEEcccEEEEEEccccccccccccEEEEEEEEccccccccccEEEEEEEcccccEEEEEcccccEEEEEEEEcccccccccccEEEEEEEEEEEEcccEEEEEEcccccccccccccccccccccEEEEEEEEEEcccEEEEEEEEEcccccEEEcccccEEEEEEEcccccEEEEccccccccccccEEEEEEEccccEEEEEEEEEEEEEcccccccccEEEccccEEEEEEEEEEEEcEEEcccEEEEEEccccEEEEEEEEcEEEEEEEEcccccEEEEEcccccEEEEEEEEEcccEEEEEEEEEEEccccccEEEEEEEEEEEEEEEEEccEEEEEccEEEEEEEEEEEccccEEEccccEEEEEEEEEEccEEEEEEccccccccccEEEEEEEEEEEEEEEEEEEEEEEEEccccEEEEEEEEEEEccccEEEccEEEEEcccEEEEEEEEcccccEEEEEEEccccEEEEEcccEEEEEEEEEEEEEEEEEEEccEEEEEEEEEEEEEEccccEEEEccccEEEEccEEEEEEEcccccccccccccEEEEEEEccccEEEEEcccccccccccccccccEEEEEccccccccccEEEEEEEEEccEEEEEEEEEEEccccccccEEEEEEEEEEEEEEccccccccccEEEcccccccccccccccccccccccccccEEEEEEEEEEccccccEEEEccEEEccccEEEEccccEEEEEEEEcccccEEEEEEEEEEEEEEEEEEcccccEEEEEEcccEEEEEEEEEccccccEEEEcEEEEEEEEEccccEEEEEEEEcccEEEEEEEEEEEEEEEEEEEccccccEEEEEEEEEEEEEEcccEEEEEcEEEEEEEEEccccccEEEEccccEEEEEccccEEEEEEEcEEEEEEEccccEEEEEEEEEEEEEEEEcccccEEEccccccccEEEEEEEcccccccccccccEEEEEEEccccEEEEccccccccccEEEEEcccccccEEcccccccccccEEEEEEEEEEEcccEEcccEEEEEEEEEEEEEEEEccccEEEEEcccccEEEEEEEcccccEEEEccccEEEEEccccccccccEEEEEEEEEEEccccccEEEEEEcccccEEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc

cccEccccccccccEEEEEcccccccccccccccHHHHHHHHHccccccEEEEEEEcccEEEEEEEEccccHcccccHEEEEEEHHEEEcccccEEEEcccEEEEEEEEEEcccEEEEEcccccEEEEEccccEEEEcccccEEEEEEcccEEEEEEEccccccccccEEEEEcccEEEEEEEEEccccccccccEEcccccEEEEEEccEEEEEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEccccEEEcccccEEEEEEEcccEEEEEEEEEEEEEcccccccEEEEEEEEEEEEEEEEEccccccccEEEEEcccccEEEEEEEEEEccccccccEEEEccccEEEEEEccEEEEEccccEEEEEEEEccccccccEEEEEEEccccEEEEccccEEEEEccEEEEEEEEEEccccccEcccccccEEEEEccccccEEEEEcccccEEEcccccccccccccccccEEEEEEEEccEEEEEEEEEcccEEEcccccccEEEEEEEEEEEEccEEEEcccccccccEEEEcHHHcccccccccccEEEEEccccEEEEEEcccccccccccHccccHHHEcEcccccccEEEEEEccccccEEEEEEEccccEEEEEEEccccccccccccEEEEEEEEEEccccEEEEEEcccccccccccccHHccccccccEEEEEEcccccEEEEEEEEEcccccEcccccEEEEEEEEcccccEEEEcccccccccccccEEEEEEEcEEEEEEEEEEEEEccccccccccccccccccccccEEEEEEEEccEEEcccEEEEEEccccEEEEEEEEccEEEEEEEccccEEEEEEcccccEEEEEEEEEccccEEEEEEEEcccccccccEEEEEEEEcEEEEEEEccEEEEcccEEEEEEEEEcccccccccHHHHHHEEEEEEEcccEEEEEEcccccccccccccEEEEEEEEEEEEEEEEEEEEEcccccEEEcccEEEEEccccEEccccEEEEEccEEEEEEEcccccccEEEEEEcccEEEEEEccccEEEEEEEcEEEEEEEEEEcccEEEEEcEEEEEEEEEEEEEEEEcccEEEEccEcEEEEcccccccEEEEcEEEEEEEEEccccEEEEEEcccccEEEEEcccccEEEEccccccccccccEEEEEEEEccccEEEEEEEEccccccccccccEcccEEEEEEEccccccccccccEcccccccHHHEcccccccEEEEEcccccEEEEEEEcccccccEEEEEcccEEEEccEEEccccccEEEEEEEccccccEEEEEEEEEEcEEEEEEEccccEEEEEcccccEEEEEEEEEcccccHHHHccccEEEEEccccccEEEEccccccccEEEEEEEEccEEEEEEEcccccccccEEEEEccHEEcccccEEEEccEEEEEEEEcccccccEEEEccccEEEEcccccEEEEEcccEEEEEEEcccEEEEEEEEEEEccEEEEEccccEEEcccccccccEEEEEEccccccEccccccEEEccccccccEEEEccccccccccEEEEEEcccHHHHHHccccccccccEEEEEEEEEccccccccccccEEEEEcccEEEEccccccEEEEEccccccEEEEEEEcccEEEEEccccEEEEEEEccccccccccEEEEEEEEEccccccEEEEEEcccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccHHHHHcccccccc

mwqlmpetdgsshhllhvplkdsplsdcgglcgdLDVQIELensgafsdlYVVKGIGIGHEMVSVHLLETEFMHMADSILLTVAEamsieppspvFVLVGAALQYKLKVIrgnipqvvalpsphhrwsvsnssvaQVDNMMGLTQALRLGQTAVIVEdtrvaghtqvsslnvvlpdtlwlyisplsisgdpvegtkaipsVARWFVVSGFQYLIQMKVfsqgpgsqeiyitesddiklsdnqsecwrtfsmpndlvlkhgwrnsriLKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEIMVCDrikfsldqtngvsesillpwapgiyQEVELMatggcaktssdykwfssdmatVSITASgvvqakkpgkaTVKVVSIFDSFNYDEIVIEvstpssmvmlrnfpVETVVGSHLQAAVTMKTLNGayfyrcdafsssvnwkagseSFIVLNAtkkqpfldklgtvehdislhgppcswahlyasssgrtmLHATLSkdyqhfdrsfdgpivlkassriaaypplivqqagdgsgfggywfnlgqseTTTQMEALDKlylvprthvdvllvggpepweedvDFIETFEIfngkhnhasdgvHIHVVSGSSKNLYGVFCQTLGTFELVFKrgnlvgddhplpavAEVSLSVTCSFPASIALLVDEPVNERKVIQTAAqadrspgrirvtpvtvangqtIRIAAVGisssgeafanssslclgwelsncdglaywddaygsqksaSSWERFLVLQNESGLCVVRatasgfcdakdghhsaQLLEISESFLTDAVRLQLVSTLrvnpeynllffnpdakanlsiaggSCFLEAAVNDSQVVEVIQAPEGLRCLQLmlspkglgTALVTVYdvglappraASALVQVADVDWIKIMSGEEISLMEGRSQSIDLmagiddgstfdsfqytYMDIRVHIEDHIVELidddatsspdggyfsmsSFKIMAKHLGITTLYVSARQqsgheilsqpirvevyapprihphdiflvpgasymltlkggptVGVYVDYTSTDEEIATIHRssgqlfaispgnTTLIATVFGNGDVVICQAFssvkvgvpssvtlnaqsdqlavghempihplfpegdvfSFYELCRNynwtiedekILGFWLgdqlhsenqdlqsaasgeiqfsndldkKELGFIKTLygrsagrtdvattfscdfvsdsysesriYSASISLsvvsdlplalgipvtwvlpphytstsllpssseshgqwdsqshkgsIVYSLLKFCSEkneaaskddisidgdtikttssnhlaciqakdrssgrieiASCVRVAEVAQIrisnryplnvIHLAVGaeceipisyydalgtpfheAHNVILYHAETNYHDVVSInytlngsgKIYLKAKQHGRALVQVSmnrspqksdyVLVSVGaqlypqnpvlhvggsldfsvegfsdqvsghwfsdnesvvhvhmpsgkaeavgigstkvffecpsmklqtTVTVLSknivsidapkevltnipyptkgytFAVRFGDTHKLKALENKAisydceadppfvgyakpwmdldtgnlyclffpyspehllrsvpkskdtspfiSVSVNASLREAHRISGSASASALFVGGFSILEMDKSSLqlnltsdsnktTITILGNTGVEIHWQnqdllkispvhkedigigghaQYEVSVLRTkkfkdkiiftlpangqrvevdvnfepgqreesNRIFASFIGFFAVFSLIVVFSIAILdgrkrstrsqpsvspatpyatapgtpehsiptvsneqsprtpqpfvDYVRRTIDETPNYRREARRRFNVQNTF

mwqlmpetdgssHHLLHVPLKDSPLSDCGGLCGDLDVQIELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSILLTVAEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTRvaghtqvsslnvvlPDTLWLYISPLSISGDPVEGTKAIPSVARWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRILKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKfsldqtngvSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITAsgvvqakkpgkATVKVVsifdsfnyDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPVNERKVIQtaaqadrspgrirvtpvtvangqtIRIAAVGISSSGEAFANSSSLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGHHSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVDWIKIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFPEGDVFSFYELCRNYNWTIEDEKILGFWLGDQLHSENQDLQSAASGeiqfsndldkKELGFIKTLygrsagrtdvATTFSCDFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPSSSESHGQWDSQSHKGSIVYSLLKFCSEKNeaaskddisidgdtikttssnhlaciqakdrssgrieIASCVRVAEVAqirisnryplNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHDVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVSVGAQLYPQNPVLHVGGSLDFSVEGFSDQVSGHWFSDNESVVHVHMPSGKAEAVGIGSTKVFFECPSMKLQTTVTVLsknivsidapkevltnipyptkGYTFAVRFGDTHKLKALENKAISYDCEADPPFVGYAKPWMDLDTGNLYCLFFPYSPEHLLRSVPKSKDTSPFISVSVNASLREAHRISGSASASALFVGGFSILEMDKSSLQLNLTSDSNKTTITILGNTGVEIHWQNQDLLKISPVHKEDIGIGGHAQYEVSVLRTKKFKDKIIftlpangqrvevDVNFEPGQREESNRIFASFIGFFAVFSLIVVFSIAILDGrkrstrsqpsvspatpyatapgtpehsiptvsneqsprtpqpfvdyvrrtidetpnyrrearrrfnvqntf

MWQLMPETDGSSHHLLHVPLKDSPLSDCGGLCGDLDVQIELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSILLTVAEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTRVAGHTQVSSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVARWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRILKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPVNERKVIQTAAQADRSPGRIRVTPVTVANGQTIRIAAVGIsssgeafansssLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGHHSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVDWIKIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFPEGDVFSFYELCRNYNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSCDFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVlpphytstsllpssseshGQWDSQSHKGSIVYSLLKFCSEKNEAASKDDISIDGDTIKTTSSNHLACIQAKDRSSGRIEIASCVRVAEVAQIRISNRYPLNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHDVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVSVGAQLYPQNPVLHVGGSLDFSVEGFSDQVSGHWFSDNESVVHVHMPSGKAEAVGIGSTKVFFECPSMKLQTTVTVLSKNIVSIDAPKEVLTNIPYPTKGYTFAVRFGDTHKLKALENKAISYDCEADPPFVGYAKPWMDLDTGNLYCLFFPYSPEHLLRSVPKSKDTSPFISVSVNASLREAHRISGSASASALFVGGFSILEMDKSSLQLNLTSDSNKTTITILGNTGVEIHWQNQDLLKISPVHKEDIGIGGHAQYEVSVLRTKKFKDKIIFTLPANGQRVEVDVNFEPGQREESNRIFASFIGFFAVFSLIVVFSIAILDGRKRSTRSQPSVSpatpyatapgtpEHSIPTVSNEQSPRTPQPFVDYVRRTIDETPNYRREARRRFNVQNTF

***************LHVPLKDSPLSDCGGLCGDLDVQIELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSILLTVAEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTRVAGHTQVSSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVARWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRILKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPVNERKVIQTAA******GRIRVTPVTVANGQTIRIAAVGISSSGEAFANSSSLCLGWELSNCDGLAYWDDAY**********RFLVLQNESGLCVVRATASGFCDAKDGHHSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVDWIKIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFPEGDVFSFYELCRNYNWTIEDEKILGFWLGDQL********************LDKKELGFIKTLYGRSAGRTDVATTFSCDFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYT**********************SIVYSLLKFCS************************HLACIQAKDRSSGRIEIASCVRVAEVAQIRISNRYPLNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHDVVSINYTLNGSGKIYLKAKQHGRALVQVS*******SDYVLVSVGAQLYPQNPVLHVGGSLDFSVEGFSDQVSGHWFSDNESVVHVHMPSGKAEAVGIGSTKVFFECPSMKLQTTVTVLSKNIVSIDAPKEVLTNIPYPTKGYTFAVRFGDTHKLKALENKAISYDCEADPPFVGYAKPWMDLDTGNLYCLFFPYSPEHLLR*******************************ASALFVGGFSILEMDKSSLQLNLTSDSNKTTITILGNTGVEIHWQNQDLLKISPVHKEDIGIGGHAQYEVSVLRTKKFKDKIIFTLPANGQRVEVDVNFE******SNRIFASFIGFFAVFSLIVVFSIAILD************************************************************************

MWQ*************HVPLKDSPLSDCGGLCGDLDVQIELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSILLTVAEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTRVAGHTQVSSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVARWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRILKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLD*******DISLHGPPCSWAHLYASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPVNERKVIQT****************TVANGQTIRIAAVGISSSGEAFANSSSLCLGWELSN*******************WERFLVLQNESGLCVVRATASGFCDAKDGHH***L*EISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVDWIKIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFPEGDVFSFYELCRNYNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSCDFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPS*SES****DSQSHKGSIVYSLLKFCSEKNEAASKDDISIDGDTIKTTSSNHLACIQAKDRSSGRIEIASCVRVAEVAQIRISNRYPLNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHDVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVSVGAQLYPQNPVLHVGGSLDFSVEGFSDQVSGHWFSDNESVVHVHMPSGKAEAVGIGSTKVFFECPSMKLQTTVTVLSKNIVSIDAPKEV****PYPTKGYTFAVRFGDTHKL*ALENKAISYDCEADPPFVGYAKPWMDLDTGNLYCLFFPYSP**************PFISVSVNASLR***********SALFVGGFSILEMDKSSLQLNLTSDSNKTTITILGNTGVEIHWQ********************AQYEVSVLRTKKFKDKIIFTLPANGQRVEVDVNFEPGQ*EESNRIFASFIGFFAVFSLIVVFSIAILDGRKRS*****************************************YVRRTIDETPNYR*************

***********SHHLLHVPLKDSPLSDCGGLCGDLDVQIELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSILLTVAEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTRVAGHTQVSSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVARWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRILKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPVNERKVIQ********PGRIRVTPVTVANGQTIRIAAVGISSSGEAFANSSSLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGHHSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVDWIKIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFPEGDVFSFYELCRNYNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSCDFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTS*******************KGSIVYSLLKFCSEKNEAASKDDISIDGDTIKTTSSNHLACIQAKDRSSGRIEIASCVRVAEVAQIRISNRYPLNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHDVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVSVGAQLYPQNPVLHVGGSLDFSVEGFSDQVSGHWFSDNESVVHVHMPSGKAEAVGIGSTKVFFECPSMKLQTTVTVLSKNIVSIDAPKEVLTNIPYPTKGYTFAVRFGDTHKLKALENKAISYDCEADPPFVGYAKPWMDLDTGNLYCLFFPYSPEHLLRSVPKSKDTSPFISVSVNASLREAHRISGSASASALFVGGFSILEMDKSSLQLNLTSDSNKTTITILGNTGVEIHWQNQDLLKISPVHKEDIGIGGHAQYEVSVLRTKKFKDKIIFTLPANGQRVEVDVNFEPGQREESNRIFASFIGFFAVFSLIVVFSIAILDGR**************************************PQPFVDYVRRTIDETPNYRREARRRFNVQNTF

*W***PE*DGSSHHLLHVPLKDSPLSDCGGLCGDLDVQIELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSILLTVAEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTRVAGHTQVSSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVARWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRILKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPVNERKVIQTAAQADRSPGRIRVTPVTVANGQTIRIAAVGISSSGEAFANSSSLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGHHSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVDWIKIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFPEGDVFSFYELCRNYNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSCDFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPSSSESHGQWDSQSHKGSIVYSLLKFCSEKNEAASKDDISIDGDTIKTTSSNHLACIQAKDRSSGRIEIASCVRVAEVAQIRISNRYPLNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHDVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVSVGAQLYPQNPVLHVGGSLDFSVEGFSDQVSGHWFSDNESVVHVHMPSGKAEAVGIGSTKVFFECPSMKLQTTVTVLSKNIVSIDAPKEVLTNIPYPTKGYTFAVRFGDTHKLKALENKAISYDCEADPPFVGYAKPWMDLDTGNLYCLFFPYSPEHLLRSVPKSKDTSPFISVSVNASLREAHRISGSASASALFVGGFSILEMDKSSLQLNLTSDSNKTTITILGNTGVEIHWQNQDLLKISPVHKEDIGIGGHAQYEVSVLRTKKFKDKIIFTLPANGQRVEVDVNFEPGQREESNRIFASFIGFFAVFSLIVVFSIAILDGRK************************************TPQPFVDYVRRTIDETPNYRREARRRFN*****

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1799	2.2.26 [Sep-21-2011]
Q5VU65		1888	Nuclear pore membrane gly	no	no	0.715	0.682	0.227	3e-48
Q9D2F7		1881	Nuclear pore membrane gly	yes	no	0.725	0.694	0.220	1e-45
Q8TEM1		1887	Nuclear pore membrane gly	no	no	0.704	0.671	0.233	3e-42
P11654		1886	Nuclear pore membrane gly	no	no	0.711	0.678	0.220	3e-38
Q9QY81		1886	Nuclear pore membrane gly	no	no	0.706	0.673	0.222	5e-37

>sp\|Q5VU65\|P210L_HUMAN Nuclear pore membrane glycoprotein 210-like OS=Homo sapiens GN=NUP210L PE=2 SV=1	Back alignment and function desciption

 Score =  195 bits (495), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 350/1536 (22%), Positives = 631/1536 (41%), Gaps = 248/1536 (16%)

Query: 40   ELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSIL-LTVAEAMSIEPPSPVFVL 98
            E+E      D+ +V GI  G  +V V + E  +  +A +++ L V E + + P   +++L
Sbjct: 206  EMEKEEKQGDVILVSGIRTGAAVVKVRIHEPFYKKVAAALIRLLVLENIFLIPSHDIYLL 265

Query: 99   VGAALQYKL-KVIRGNIPQVVALPSPH-------HRWSVSNS---SVAQVDNMMGLTQAL 147
            VG  ++Y++ K+++G + +V   P  H       HR +++ S    VA +D+   +  A 
Sbjct: 266  VGTYIKYQVAKMVQGRVTEV-KFPLEHYILELQDHRVALNGSHSEKVAILDDKTAMVTAS 324

Query: 148  RLGQTAVI-----VEDTRVAGHTQVSSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVA 202
            +LGQT ++     V    V+G     ++ VV P  L   + P    G+            
Sbjct: 325  QLGQTNLVFVHKNVHMRSVSGLPN-CTIYVVEPGFLGFTVQP----GN------------ 367

Query: 203  RWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPND-----LVL 257
            RW +  G  Y+I + VF +   S ++YI  SD++++         T+  P +     L  
Sbjct: 368  RWSLEVGQVYVITVDVFDKS--STKVYI--SDNLRI---------TYDFPKEYFEEQLTT 414

Query: 258  KHGWRNSRILKATSQGLGKLTASLTYF----SGLHDTKEVLKVVQEIMVCDRIKFSLDQT 313
             +G  +  I+KA   G+  + ASLT        +   K ++K  QE+    +I F +  T
Sbjct: 415  VNG--SYHIVKALKDGVVVINASLTSIIYQNKDIQPIKFLIKHQQEV----KIYFPIMLT 468

Query: 314  NGVSESILLPWAP-GIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKK-PG 371
                + +  P  P G+    ++   GG    S ++ W SS+   V +T  GVV A +  G
Sbjct: 469  ---PKFLAFPHHPMGMLYRYKVQVEGG----SGNFTWTSSNETVVIVTTKGVVTAGQVRG 521

Query: 372  KATVKVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLN-----G 426
             +TV    + + F Y EI I V   + M +L  F  +  +G  ++  + M  +N      
Sbjct: 522  NSTVLARDVQNPFRYGEIKIHVLKLNKMELL-PFHADVEIGQIIEIPIAMYHINKETKEA 580

Query: 427  AYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGT---VEHDISLHGPP-CSWAHL 482
              F  C   S  +N                   +DK G    ++  I   GP  CS  H+
Sbjct: 581  MAFTDCSHLSLDLN-------------------MDKQGVFTLLKEGIQRPGPMHCSSTHI 621

Query: 483  YASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFN 542
             A S G T++  ++++  ++          L++S+  AAY PL                 
Sbjct: 622  AAKSLGHTLVTVSVNECDKY----------LESSATFAAYEPL----------------- 654

Query: 543  LGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPW--EEDVDFIETFEIFNGKHNHASDG 600
                     +  ++   +  ++  +++  GGP PW  E    F+E     N +       
Sbjct: 655  -------KALNPVEVALVTWQSVKEMVFEGGPRPWILEPSRFFLE----LNAEKTEKIGI 703

Query: 601  VHIHVVSGSSKN--LYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASI 658
              + + S   +N  +Y + C  LG   L F+ GN  G  +P PAV  + +   C+ PAS+
Sbjct: 704  AQVWLPSKRKQNQYIYRIQCLDLGEQVLTFRIGNHPGVLNPSPAVEVLQVRFICAHPASM 763

Query: 659  ALLVDEPVNERKVIQTAAQADRSPGRIR-VTPVTVANGQTIRIAAVGISSSGEAFANSSS 717
            ++    PV +   +   AQ    P   + + PV+      + +A          F N SS
Sbjct: 764  SV---TPVYK---VPAGAQPCPLPQHNKWLIPVSRLRDTVLELAV--FDQHRRKFDNFSS 815

Query: 718  LCLGWELSNCDGLAYWDDAY---------GSQKSASSWERFLVLQNESGLCVVRATASGF 768
            L L W+ SN + LA+++D           GS ++     + L +    G  ++     G+
Sbjct: 816  LMLEWKSSN-ETLAHFEDYKSVEMVAKDDGSGQTRLHGHQILKVHQIKGTVLIGVNFVGY 874

Query: 769  CDAKDGHHSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFL 828
             + K         EIS    +  V L LV  + V PE   ++ +PD K   S+  GS + 
Sbjct: 875  SEKKSPK------EISNLPRSVDVELLLVDDVTVVPENATIYNHPDVKETFSLVEGSGYF 928

Query: 829  EAAVNDS-QVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVD 887
               VN S Q V  I   E    ++L+  P   G   + VYD+ LA    A+A ++V+D+ 
Sbjct: 929  --LVNSSEQGVVTITYMEAESSVELV--PLHPGFFTLEVYDLCLAFLGPATAHLRVSDIQ 984

Query: 888  WIKIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTY---MDIRVHIEDHIVELIDDD 944
             +++   +++ + +    ++ ++     GS+   FQ  Y   M++++ +   IV L   +
Sbjct: 985  ELELDLIDKVEIDKTVLVTVRVL-----GSSKRPFQNKYFRNMELKLQLASAIVTLTPME 1039

Query: 945  ATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIF 1004
                    Y       + A  +G TTL   A+ + G +  S P  +EV+ P R+ P  + 
Sbjct: 1040 QQDEYSENYI------LRATTIGQTTLVAIAKDKMGRKYTSTPRHIEVFPPFRLLPEKMT 1093

Query: 1005 LVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRS---SGQLFAISPGNTTLIATVFGN 1061
            L+P     +  +GGP     V ++ +++ +A ++R    +G++   +  + T+       
Sbjct: 1094 LIPMNMMQVMSEGGPQPQSIVHFSISNQTVAVVNRRGQVTGKIVGTAVVHGTIQTVNEDT 1153

Query: 1062 GDVVI-CQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPL--FPEGDVFSFYELC--RN 1116
            G V++  Q    ++V    +V + A + +L    +MP++ +        FSF        
Sbjct: 1154 GKVIVFSQDEVQIEVVQLRAVRILAAATRLITATKMPVYVMGVTSTQTPFSFSNANPGLT 1213

Query: 1117 YNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTD 1176
            ++W++    +L        HSE   LQ                E  F   ++ ++AGRT 
Sbjct: 1214 FHWSMSKRDVLDLV---PRHSE-VFLQLPV-------------EHNFAMVVHTKAAGRTS 1256

Query: 1177 VATTFSCDFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPSSSES 1236
            +  T  C   S    E  +   S  + ++    L L        P       L+P +S+ 
Sbjct: 1257 IKVTVHCMNSSSGQFEGNLLELSDEVQILVFEKLQL------FYPECQPEQILMPINSQL 1310

Query: 1237 HGQWDSQSHKGSIVYSLLKFCSEKNEAASKD-DISIDGDTIKTTSSNHLACIQAKDRSSG 1295
              +  +     + V S +  C   +    +D +  +   +I  T+   +  I+    +  
Sbjct: 1311 --KLHTNREGAAFVSSRVLKCFPNSSVIEEDGEGLLKAGSIAGTAVLEVTSIEPFGVNQT 1368

Query: 1296 RIEIASCVRVAEVAQIRISNRYPLNVIH------LAVGAECEIPISYYDALGTPFHEAHN 1349
             I   + V+VA V  +R+S++  L            +G      + +Y+++G  FH  HN
Sbjct: 1369 TI---TGVQVAPVTYLRVSSQPKLYTAQGRTLSAFPLGMSLTFTVQFYNSIGEKFH-THN 1424

Query: 1350 VILYHAETNYHDVVSI-----NYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVS 1404
              LY A  N  D++ I     NYT         +A   G  LV +   R P  +DY+ V+
Sbjct: 1425 TQLYLA-LNRDDLLHIGPGNKNYTYMA------QAVNRGLTLVGLWDRRHPGMADYIPVA 1477

Query: 1405 VGAQLYPQNPVLHVGGSLDFSVEGFSDQ-VSGHWFSDNESVVHVHMPSGKAEAVGIGSTK 1463
            V   + P   +  VG  + FS    S     G W     +++   + +G   A   G+  
Sbjct: 1478 VEHAIEPDTKLTFVGDIICFSTHLVSQHGEPGIWMISANNILQTDIVTGVGVARSPGTAM 1537

Query: 1464 VFFECPSM---KLQTTVTVLSKNIVSIDAPKEVLTN 1496
            +F + P +     +  V   S+ ++S D  K  LTN
Sbjct: 1538 IFHDIPGVVKTYREVVVNASSRLMLSYDL-KTYLTN 1572

Homo sapiens (taxid: 9606)

>sp\|Q9D2F7\|P210L_MOUSE Nuclear pore membrane glycoprotein 210-like OS=Mus musculus GN=Nup210l PE=2 SV=2	Back alignment and function description

>sp\|Q8TEM1\|PO210_HUMAN Nuclear pore membrane glycoprotein 210 OS=Homo sapiens GN=NUP210 PE=1 SV=3	Back alignment and function description

>sp\|P11654\|PO210_RAT Nuclear pore membrane glycoprotein 210 OS=Rattus norvegicus GN=Pom210 PE=1 SV=1	Back alignment and function description

>sp\|Q9QY81\|PO210_MOUSE Nuclear pore membrane glycoprotein 210 OS=Mus musculus GN=Nup210 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1799
296087607		1961	unnamed protein product [Vitis vinifera]	0.993	0.911	0.671	0.0
359488807		2363	PREDICTED: nuclear pore membrane glycopr	0.989	0.753	0.672	0.0
255560914		2256	RNA binding protein, putative [Ricinus c	0.976	0.778	0.664	0.0
356513961		2304	PREDICTED: nuclear pore membrane glycopr	0.986	0.770	0.601	0.0
449446702		2257	PREDICTED: LOW QUALITY PROTEIN: nuclear	0.977	0.779	0.594	0.0
297805634		1918	EMB3012 [Arabidopsis lyrata subsp. lyrat	0.970	0.910	0.582	0.0
334188094		1923	protein embryo defective 3012 [Arabidops	0.973	0.911	0.576	0.0
9759492		1962	nuclear pore protein-like [Arabidopsis t	0.973	0.892	0.565	0.0
449489576		1758	PREDICTED: nuclear pore membrane glycopr	0.763	0.781	0.612	0.0
297853498		1722	EMB3012 [Arabidopsis lyrata subsp. lyrat	0.816	0.853	0.580	0.0

>gi\|296087607\|emb\|CBI34863.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 2458 bits (6371), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1216/1810 (67%), Positives = 1450/1810 (80%), Gaps = 22/1810 (1%)

Query: 1    MWQLMPETDGSSHHLLHVPLKDSPLSDCGGLCGDLDVQIELENSGAFSDLYVVKGIGIGH 60
            MWQL PETDG   HL+HVPLKDSPLSDCGGLCGDL VQI+LE+ GAFSDLYVVKGIGIGH
Sbjct: 163  MWQLRPETDGLPPHLVHVPLKDSPLSDCGGLCGDLSVQIKLEDGGAFSDLYVVKGIGIGH 222

Query: 61   EMVSVHLLETEFMHMADSILLTVAEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVAL 120
            E+VSVHLLE +F HMAD I+LTVAEAMS++PPSPVF+L+GAA++Y LKVIRGNIPQVVAL
Sbjct: 223  EVVSVHLLEPQFEHMADKIVLTVAEAMSLDPPSPVFILIGAAVRYTLKVIRGNIPQVVAL 282

Query: 121  PSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTRVAGHTQVSSLNVVLPDTLWL 180
            PSP+HRWSV NSSVAQVD+ MGL   L LG T V VEDTRVAGH Q+SSL+VVLPDTL L
Sbjct: 283  PSPYHRWSVLNSSVAQVDSQMGLVNVLSLGVTTVTVEDTRVAGHIQMSSLHVVLPDTLCL 342

Query: 181  YISPLSISGDPVEGTKAIPSVARWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSD 240
            YI PLS+S DP+EG K+IPS ARW+  SG QYLIQMKVFS GPG QE+YITESD++ L  
Sbjct: 343  YILPLSLSDDPLEGAKSIPSGARWYAFSGQQYLIQMKVFSGGPGGQEVYITESDEVSLQY 402

Query: 241  NQSECWRTFSMPNDLVLKHGWRNSRILKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEI 300
            NQS  W+ F + + + +KH W NSRILK TS+GLG LTASL+YFSG    KEVLKVVQE+
Sbjct: 403  NQSIYWKAFLVSDRIAVKHDWWNSRILKMTSEGLGNLTASLSYFSGQPGRKEVLKVVQEV 462

Query: 301  MVCDRIKFSLDQTNGVSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSIT 360
            MVC+++KFS D+ + VSE ILLPWAP +YQEV+L ATGGCAK+SSDYKWFSSDMATVS++
Sbjct: 463  MVCEKVKFSFDKRSAVSERILLPWAPAVYQEVDLKATGGCAKSSSDYKWFSSDMATVSVS 522

Query: 361  ASGVVQAKKPGKATVKVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVT 420
            ASGV+QAKKPGKA VKVVSIFD FNYDE+V+EV+ PSSMVML+NFPVETVVGS LQAAVT
Sbjct: 523  ASGVIQAKKPGKAAVKVVSIFDPFNYDEVVVEVALPSSMVMLQNFPVETVVGSQLQAAVT 582

Query: 421  MKTLNGAYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWA 480
            MK  NGAYFYRCDAFSS V WKAGSESFI++NAT + P LDKL +VE   S++GPPC+W 
Sbjct: 583  MKASNGAYFYRCDAFSSFVRWKAGSESFIIVNATGETPVLDKLESVEPYASVYGPPCAWT 642

Query: 481  HLYASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYW 540
            ++YASS+GR MLHATL+K+YQH D  F GPIVL+ASSRI AY PL+++QAGDG+ FGGYW
Sbjct: 643  YVYASSAGRAMLHATLTKEYQHHDHPFHGPIVLQASSRIGAYLPLVLRQAGDGNQFGGYW 702

Query: 541  FNLGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDG 600
             N  Q+E  +Q E LD L+LVP TH+DV+LVGGPE W++ VDF ET +I + +H    DG
Sbjct: 703  INTAQAEAHSQFENLDDLFLVPGTHLDVMLVGGPEWWDKSVDFNETVDILD-EHARLKDG 761

Query: 601  VHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIAL 660
            V +H VS S  +LY V CQ LGT+++ FKRGNLVGDDHPLPAVAEV LS+TCSFP+SI L
Sbjct: 762  VLVHEVSSSYGSLYRVLCQILGTYKIAFKRGNLVGDDHPLPAVAEVELSLTCSFPSSITL 821

Query: 661  LVDEPVNERKVIQTAAQADRSPGRIRVTPVTVANGQTIRIAAVGISSSGEAFANSSSLCL 720
            + DEPVNE  VI  A QADR+P RIRVTP+TVANG+TIRIAAVGIS+SG+AFANSSSLCL
Sbjct: 822  IADEPVNEPGVIWAATQADRNPERIRVTPITVANGRTIRIAAVGISNSGKAFANSSSLCL 881

Query: 721  GWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGHHSAQL 780
             WELSNCD LA+WDD+Y    S+S WERFL+LQNES LC+VRAT  GF     GH SA L
Sbjct: 882  KWELSNCDALAFWDDSYDLGGSSSGWERFLILQNESRLCIVRATVIGFAGTVSGHVSAPL 941

Query: 781  LEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEV 840
            LE SE+ LTDAVRLQLVS+LRV PE+ LLFFN DAKANLSI GGSCFL+A VNDS+VV+V
Sbjct: 942  LESSENVLTDAVRLQLVSSLRVTPEFKLLFFNSDAKANLSITGGSCFLDAVVNDSRVVDV 1001

Query: 841  IQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVDWIKIMSGEEISLM 900
            IQ P GL+CLQL+++PKGLGTALVTVYD+GLAP  +AS++VQVADVDWI+I SGEEISLM
Sbjct: 1002 IQPPPGLQCLQLIVAPKGLGTALVTVYDIGLAPHLSASSVVQVADVDWIRITSGEEISLM 1061

Query: 901  EGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDA-TSSPDGGYFSMSSF 959
            EG  QSI +MAG+DDGSTFD+ QY YM+I+VHIEDHIV+L+DDD   SS  GGY +   F
Sbjct: 1062 EGSVQSIIVMAGVDDGSTFDASQYVYMNIQVHIEDHIVDLVDDDNDISSIGGGYVNSPKF 1121

Query: 960  KIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGP 1019
             I+AKHLG+T LYVSARQ SG+EI S  I+VEVYAPPRIHP DIFLVPGA+Y+L +KGGP
Sbjct: 1122 MILAKHLGVTILYVSARQASGYEIASNQIKVEVYAPPRIHPPDIFLVPGAAYVLNVKGGP 1181

Query: 1020 TVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSSVKVGVPS 1079
             +GV ++Y S D+ IAT+++SSG+L AISPGN+TL+ATV+G GD VICQA+  +KVGVPS
Sbjct: 1182 QIGVVIEYASLDDRIATVNKSSGRLSAISPGNSTLVATVYGKGDTVICQAYGRIKVGVPS 1241

Query: 1080 SVTLNAQSDQLAVGHEMPIHPLFPEGDVFSFYELCRNYNWTIEDEKILGFWLGDQLHSEN 1139
             VTLN QS+QL VG EMPI P  P+GD+FSFYELC+NY WT+EDEK+L F + + +  + 
Sbjct: 1242 LVTLNVQSEQLDVGREMPIFPSLPQGDLFSFYELCKNYKWTVEDEKVLSFHMAEHIRGDR 1301

Query: 1140 QDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSCDFVSDSYSESRIYSAS 1199
              L S+ S EI+    LD+K+LGFI  LYGRSAGRT VA +F+CDF+S  +S+SR YSAS
Sbjct: 1302 YGLPSSGSKEIKLPGHLDEKDLGFINMLYGRSAGRTTVAVSFNCDFISSGHSQSRSYSAS 1361

Query: 1200 ISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPSSSESHGQWDSQSHKGSIVYSLLKFCSE 1259
            +S+SVVS+LPLA G+P+TWVLPP+YT++SLLPSSSES+GQWD  S KG+I YSLL+ C  
Sbjct: 1362 MSISVVSELPLAFGVPITWVLPPYYTTSSLLPSSSESYGQWD-LSRKGTITYSLLRSCGG 1420

Query: 1260 KNEAASKDDISIDGDTIKTTSSNHLACIQAKDRSSGRIEIASCVRVAEVAQIRIS-NRYP 1318
            KNE   KD ISID D IKTT SN+LACIQAKDR++G+  IASCVRVAEVAQIRI+  ++ 
Sbjct: 1421 KNEEVQKDAISIDRDRIKTTESNNLACIQAKDRTTGKTGIASCVRVAEVAQIRITPQKFS 1480

Query: 1319 LNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHDVVSINYTLNGSGKIYLK 1378
             +VI LAV AE ++PI++ D LG PFHEA NVI   AETNY D+VSIN T +G G I+LK
Sbjct: 1481 FHVIDLAVDAEVKLPINFCDVLGNPFHEAFNVIPLDAETNYPDIVSINSTGDGYGNIHLK 1540

Query: 1379 AKQHGRALVQVSMNRSPQKSDYVLVSVGAQLYPQNPVLHVGGSLDFSVEGFSDQVSGHWF 1438
              +HGRAL++VS+N SP KSDYVLVSVGA L P+NPVLH+GG L+FS+EG  D+VSG W 
Sbjct: 1541 GIRHGRALLRVSINSSPHKSDYVLVSVGAYLSPRNPVLHLGGHLNFSIEGLKDKVSGQWL 1600

Query: 1439 SDNESVVHVHMPSGKAEAVGIGSTKVFFECPSMKLQTTVTVLSKNIVSIDAPKEVLTNIP 1498
            S NESV+ + + SG+A+AVG G+T+VFFEC S+KLQTTVTV    IV +DAP E LTN P
Sbjct: 1601 SGNESVISLDVLSGEAQAVGEGTTQVFFECSSLKLQTTVTVQKGKIVLVDAPMETLTNAP 1660

Query: 1499 YPTKGYTFAVRF-GDT--HKLKALENK-AISYDCEADPPFVGYAKPWMDLDTGNLYCLFF 1554
             P KGY F+V+F  DT  H L+   N   + +DC  DPPFVGYAKPW D  TG  YCLFF
Sbjct: 1661 IPAKGYNFSVKFSSDTYGHDLEGFRNDMGVLFDCRVDPPFVGYAKPWRDFGTGKSYCLFF 1720

Query: 1555 PYSPEHLLRSVPKSKDTSPFISVSVNASLREAHRISGSASASALFVGGFSILEMDKSSLQ 1614
            PYSPEHL RSVPKSKD  P+IS+S++AS++E + +SG  SASALFVGGFSILEM K    
Sbjct: 1721 PYSPEHLARSVPKSKDMRPYISLSISASVQETNHVSG--SASALFVGGFSILEMGK---- 1774

Query: 1615 LNLTSDSNKTTITILGNTGVEIHWQNQDLLKISPVHKEDIGIGGHAQYEVSVLRTKKFKD 1674
            LNLT+ SNKT ITILGNT V+IHW  +D + ISPVHKED GIGG A+YEV VL+ KKFKD
Sbjct: 1775 LNLTAGSNKTIITILGNTDVDIHWHERDSIMISPVHKEDFGIGGLAKYEVKVLQAKKFKD 1834

Query: 1675 KIIFTLPANGQRVEVDVNFEPGQREESNR-----IFASFIGFFAVFSLIVVFSIAILDGR 1729
            K++ TLPANGQRVE+DV+++PG+R  S       ++A  +G  A+  L +   I  LD  
Sbjct: 1835 KVVITLPANGQRVELDVSYDPGERAYSVSTVKVTLWAGVVGCIALLLLTLAIFIFFLD-- 1892

Query: 1730 KRSTRSQPSVSPATPYATAPGTPEHSIPTVSNEQSPRTPQPFVDYVRRTIDETPNYRREA 1789
             R  R++PS  PA     AP TP+   P V N+ SPRTPQPFV+YVRRTI ETP Y RE 
Sbjct: 1893 -RPDRARPSNPPANSSIVAPTTPDRRSPAVQNDSSPRTPQPFVEYVRRTIHETPYYTREG 1951

Query: 1790 RRRFNVQNTF 1799
            RRR N QNT+
Sbjct: 1952 RRRVNPQNTY 1961

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359488807\|ref\|XP_002272790.2\| PREDICTED: nuclear pore membrane glycoprotein 210-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255560914\|ref\|XP_002521470.1\| RNA binding protein, putative [Ricinus communis] gi\|223539369\|gb\|EEF40960.1\| RNA binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356513961\|ref\|XP_003525676.1\| PREDICTED: nuclear pore membrane glycoprotein 210-like [Glycine max]	Back alignment and taxonomy information

>gi\|449446702\|ref\|XP_004141110.1\| PREDICTED: LOW QUALITY PROTEIN: nuclear pore membrane glycoprotein 210-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297805634\|ref\|XP_002870701.1\| EMB3012 [Arabidopsis lyrata subsp. lyrata] gi\|297316537\|gb\|EFH46960.1\| EMB3012 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|334188094\|ref\|NP_198864.2\| protein embryo defective 3012 [Arabidopsis thaliana] gi\|332007169\|gb\|AED94552.1\| protein embryo defective 3012 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|9759492\|dbj\|BAB10497.1\| nuclear pore protein-like [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449489576\|ref\|XP_004158353.1\| PREDICTED: nuclear pore membrane glycoprotein 210-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297853498\|ref\|XP_002894630.1\| EMB3012 [Arabidopsis lyrata subsp. lyrata] gi\|297340472\|gb\|EFH70889.1\| EMB3012 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1799
DICTYBASE\|DDB_G0288545		1916	nup210 "nucleoporin 210" [Dict	0.189	0.177	0.250	1.5e-44
UNIPROTKB\|F1NZB4		1888	NUP210 "Uncharacterized protei	0.332	0.317	0.239	1.1e-42
ZFIN\|ZDB-GENE-050208-132		1869	nup210 "nucleoporin 210" [Dani	0.313	0.301	0.223	2.7e-40
UNIPROTKB\|F1SPG4		1898	NUP210 "Uncharacterized protei	0.294	0.278	0.231	9.7e-40
UNIPROTKB\|Q8TEM1		1887	NUP210 "Nuclear pore membrane	0.292	0.278	0.243	2.1e-39
MGI\|MGI:1924845		1881	Nup210l "nucleoporin 210-like"	0.331	0.316	0.222	1.4e-36
MGI\|MGI:1859555		1886	Nup210 "nucleoporin 210" [Mus	0.293	0.279	0.227	1.7e-35
UNIPROTKB\|F1MPW7		1830	NUP210 "Uncharacterized protei	0.295	0.290	0.227	1.8e-35
UNIPROTKB\|Q5VU65		1888	NUP210L "Nuclear pore membrane	0.335	0.319	0.231	7e-35
RGD\|69339		1886	Nup210 "nucleoporin 210" [Ratt	0.293	0.279	0.219	3e-34

DICTYBASE\|DDB_G0288545 nup210 "nucleoporin 210" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

 Score = 239 (89.2 bits), Expect = 1.5e-44, Sum P(4) = 1.5e-44
 Identities = 94/375 (25%), Positives = 169/375 (45%)

Query:    36 DVQIELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSILLTVAEAMSIEPPSPV 95
             DV +++E     +   +V+G+  G   ++  L E  +  +  S  +++ E + + P   +
Sbjct:   219 DVALKMEQESLQTSFVLVQGVDTGRTEINTKLTEPTYKDIQHSTTISILEPLQLNPSYLL 278

Query:    96 FVLVGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVI 155
             +V+ G  +QY+L   + NI + + LP+P++ WS SNS V +VDN  G   AL LG+T + 
Sbjct:   279 YVIPGTQIQYQLLTKKRNILENIPLPNPNYIWSSSNSKVGKVDNS-GNFMALDLGRTDLK 337

Query:   156 VEDTRVAGHTQVSSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVARWFVVSGFQYLIQ 215
             V+   ++ +   + +NVV P  L + I PL  SG        +  V+ W ++    Y++ 
Sbjct:   338 VQHKNMSDNKVQAFVNVVHPSYLAIKIEPLK-SG--------LGPVSNWNLIENRDYILV 388

Query:   216 MKVFSQGPGSQEIYITE-SDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRILKATSQGL 274
             ++++       +I+ +E + D+ +     E   +  +P +   +    ++  LKA  QGL
Sbjct:   389 VELYDAS--GHKIHSSEITFDLNIPTEYFERLPSSQIPPNTPKRS---DTFYLKAIKQGL 443

Query:   275 GKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSESILLPWAPGIYQEVEL 334
               L ASL     L+  K+  +++  I V   +     Q       + LP+ P   Q   +
Sbjct:   444 VALKASLVKVYDLN-LKKYTQLLNPISVEQEVTIH-SQIQLSPPIVYLPYLPNHRQYSMI 501

Query:   335 MATGGCAK-----TSSDYKWFSSDMATVSITASG-----VVQAKKPGKATVKVVSIFDSF 384
                GG  +      +S         A  S T+SG     VV  K P      +V +    
Sbjct:   502 RPIGGSGEYNWYTNNSAIVTVDPTGAITSQTSSGQTEVIVVDKKNPHNRDKVLVIVLQP- 560

Query:   385 NYDEIVIEVSTPSSM 399
               DEI+I   TPS +
Sbjct:   561 --DEIII---TPSQV 570

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB\|F1NZB4 NUP210 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-050208-132 nup210 "nucleoporin 210" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SPG4 NUP210 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8TEM1 NUP210 "Nuclear pore membrane glycoprotein 210" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:1924845 Nup210l "nucleoporin 210-like" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

MGI\|MGI:1859555 Nup210 "nucleoporin 210" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MPW7 NUP210 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5VU65 NUP210L "Nuclear pore membrane glycoprotein 210-like" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|69339 Nup210 "nucleoporin 210" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.2.1.n1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00020663001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (1952 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1799
pfam02368		79	pfam02368, Big_2, Bacterial Ig-like domain (group	0.001
pfam02368		79	pfam02368, Big_2, Bacterial Ig-like domain (group	0.002

>gnl\|CDD\|217000 pfam02368, Big_2, Bacterial Ig-like domain (group 2)	Back alignment and domain information

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 1005 LVPGASYMLTLKGGPTVGVYVDYT--STDEEIATIHRSSGQLFAISPGNTTLIATVFGNG 1062
            L+ GA+  L     P+       T  S++  IAT+  S+G + A++ G  T+ AT  G+ 
Sbjct: 14   LLKGATLQLGATVLPSDASNGKVTWSSSNTSIATVSGSTGLVTALAKGTATITATS-GDN 72

Query: 1063 DVVIC 1067
                 
Sbjct: 73   QSATY 77

This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial and phage surface proteins such as intimins. Length = 79

>gnl\|CDD\|217000 pfam02368, Big_2, Bacterial Ig-like domain (group 2)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1799
KOG1833		679	consensus Nuclear pore complex, gp210 component [N	100.0
KOG1833		679	consensus Nuclear pore complex, gp210 component [N	99.94
smart00635		81	BID_2 Bacterial Ig-like domain 2.	97.77
PF02368		79	Big_2: Bacterial Ig-like domain (group 2); InterPr	97.55
PF02368		79	Big_2: Bacterial Ig-like domain (group 2); InterPr	97.52
smart00635		81	BID_2 Bacterial Ig-like domain 2.	97.2
TIGR00864		2740	PCC polycystin cation channel protein. Note: this	96.88
TIGR00864		2740	PCC polycystin cation channel protein. Note: this	95.85
COG5492		329	Bacterial surface proteins containing Ig-like doma	91.93
COG5492		329	Bacterial surface proteins containing Ig-like doma	91.73

>KOG1833 consensus Nuclear pore complex, gp210 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=3.9e-37  Score=367.11  Aligned_cols=667  Identities=22%  Similarity=0.244  Sum_probs=477.1

Q ss_pred             EEeccccEEEEEecccccccccc-ceeEEEE-EecCCCCcccCceeeeeeecCcceEEEEEeccccEEEEEEEEcccCCC
Q 000244          559 YLVPRTHVDVLLVGGPEPWEEDV-DFIETFE-IFNGKHNHASDGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGD  636 (1799)
Q Consensus       559 ~L~~GSs~~~~~~gGP~pw~~e~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~VtC~~lGe~~l~~~vgN~~~~  636 (1799)
                      ++..||+..+...|||++|..|. .+++... ..++.+        +.+.+   .-.|+..|+.+|..+.  +.||....
T Consensus         2 ~~~~~st~~~~~~~~p~r~~~e~~~~ik~~t~~~~~~~--------~~~~~---~v~~~is~q~v~~~~~--~~~nl~~i   68 (679)
T KOG1833|consen    2 GRKYGSTPRHIEVGGPFRWLPEKMTLIKTMTQVMSEGG--------PQPQS---IVHFSISNQTVAVVNR--RGGNLGKI   68 (679)
T ss_pred             cccccCccceEEcCCCcccccchhHHHHHHHHHhhccC--------Cccce---EEEEeecchhhhhhhh--hccccccc
Confidence            45679999999999999997773 4443210 011111        11111   2378899999998877  88999999


Q ss_pred             CCCCCeeEEEEEEEEeecCCeEEEEEcCCcchhhhhccccccCCCCCceeEEEEEeeCCCeEEEEEEEEcCCCCeEeecC
Q 000244          637 DHPLPAVAEVSLSVTCSFPASIALLVDEPVNERKVIQTAAQADRSPGRIRVTPVTVANGQTIRIAAVGISSSGEAFANSS  716 (1799)
Q Consensus       637 ~np~Pav~~~~~~v~C~~P~~L~l~v~eP~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~r~~~i~v~v~D~~gr~f~N~S  716 (1799)
                      ..|.|++.++++.++|..|..+.+...+|.+++..++......|         +.+.|+....+....--+.+..|.|++
T Consensus        69 ~~~~~~h~~i~~~~~~~~~~~v~~~~~~q~~~l~~vr~~~~a~r---------~~van~~~~~va~v~~s~~~~~fSns~  139 (679)
T KOG1833|consen   69 VGPAPVHGEIQTSNECTGPVIVFSQDEVQIEQLRAVRILAAATR---------LIVANGMPVYVAGVTSTQTPFSFSNSN  139 (679)
T ss_pred             cccceeehheeeeecccCceEEEEeccchhhHHHHHHHHhhccc---------eEEecCceEEEEEeecccCcceecCCC
Confidence            99999999999999999999999998878777766665443333         245788877776554444554454443


Q ss_pred             CceEEEEecCCCcceEEecccCcccCcCcceEEEEEeecceeEEEEEEEeeeeeccCCcccceeccccccceeeeEEEEE
Q 000244          717 SLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGHHSAQLLEISESFLTDAVRLQL  796 (1799)
Q Consensus       717 SL~i~W~~s~~~~la~~e~~~~~~~~~s~~~~~~~l~~~~G~~~I~At~~gy~~~~~~~~~~~~~~~~~~~l~~~iel~l  796 (1799)
                      -+.          +-||+.+   +....+|+++..+++..|.+..+ .+.+.   ..+...                   
T Consensus       140 ~~~----------~~~w~~~---~~t~~~~e~~~~~~~~~~~~~~~-~v~~~---~~g~~s-------------------  183 (679)
T KOG1833|consen  140 PLL----------TFHWSMS---DVTDLVPEHSEVFLQLPGEHNFA-VVHTK---AAGRTS-------------------  183 (679)
T ss_pred             chh----------eeecchh---hhhccccccchHHHhcccceeeE-EEeee---ccccce-------------------
Confidence            332          2356443   34446788888888899998887 65543   111111                   


Q ss_pred             eeeeEEcCceeEEeeCCCceEEEEEccceeEEEEEEcCcceEEEEeccCcceeeeEEEeeccceEEEEEEEEeccCCCCc
Q 000244          797 VSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRA  876 (1799)
Q Consensus       797 v~~i~l~P~~lti~n~p~~~~~l~i~gGSG~f~~sss~~~Vv~v~~~~~g~~~~~~~vtp~~~G~~~V~v~D~cl~~~~~  876 (1799)
                            .+..+..+|  .....+...|||+.++..-.++....+...   ..+.+.++.|++.|+++|++.|.|+.+ .+
T Consensus       184 ------~~~tl~~~~--vs~~~~~~t~gs~~~e~~~l~t~~s~v~~p---l~q~~~vl~Pkn~Gq~kl~v~d~g~~~-~s  251 (679)
T KOG1833|consen  184 ------IKVTLHCMN--VSSGQFEGTGGSLSDEVQILMTTGSDVGFP---LIQAHDVLNPKNNGQVKLRVSDAGLVG-QS  251 (679)
T ss_pred             ------eEEEEEEee--cccCccccccceeEEEEEeeecccccccch---hhcHHHhcCCCCCceEEEEEecccccc-cc
Confidence                  011111112  222237899999999988887777766433   467889999999999999999999999 79


Q ss_pred             eeEEEEEeeeeEEEEEecceEEEecCcEEEEEEEEeecCCCeEecCCceeeEEEEEeceeEEEEeecCCCCCCCCCcccc
Q 000244          877 ASALVQVADVDWIKIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSM  956 (1799)
Q Consensus       877 a~a~V~V~di~~Iev~~p~~veVevG~tv~~~v~v~d~~g~~f~~s~~~~mdl~~~~~~~iv~l~~~~~~~~p~~e~~~~  956 (1799)
                      +.|.++|.|+++|+++.+..  +++|.++++.+..-+.+|..|+.++..+||.++......+.+           +++..
T Consensus       252 a~al~rvad~~~l~id~egl--v~~G~s~~vtll~~~~~g~~Feveq~~l~d~qvd~~~lhV~s-----------~~~sg  318 (679)
T KOG1833|consen  252 ADALVRVADIHSLAIDAEGL--VEIGASVEVTLLAQDETGASFEVEQRPLADAQVDASNLHVIS-----------TKVSG  318 (679)
T ss_pred             cchheeccCccEeeeccccc--ccCCceEEEEEEeecccCCccccccccccccccccccCcccc-----------ccccc
Confidence            99999999999999997666  899999999999999999999999999999998544444444           33346


Q ss_pred             eeEEEEEeEEEEEEEEEEEEecCceEEEEeeEEEEEeCCCccccCeeEEccCceEEEEEeeCCccCeEEEEeecCccEEE
Q 000244          957 SSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIAT 1036 (1799)
Q Consensus       957 s~~~v~a~~~G~ttLtas~~~~~G~~i~S~~~~I~VfpPL~l~P~~ltLv~Gs~~ql~~~GGP~p~~~v~fss~n~~Vas 1036 (1799)
                      .+|.++|.++|.++++++++..+|+...|.++++|+|.|+++.|+.++|+||+++|++++|||+|...+.|+-.|..+|+
T Consensus       319 ~~~tl~A~~lGtttl~vs~~~S~G~vls~~Th~vqlysp~~l~p~~l~l~PGsk~~l~~eGGp~p~~~ld~~~~~n~~A~  398 (679)
T KOG1833|consen  319 LRYTLRANSLGTTTLSVSSKSSSGRVLSSRTHTVQLYSPIFLQPKRLTLIPGSKFQLEVEGGPQPTPPLDFSLNNNMIAS  398 (679)
T ss_pred             ceeEEEeeccccEEEEEEEecccceEeeccceeEEEeccccCCcceEEEecCCceEEEEccCCCCCCcccceecccceee
Confidence            89999999999999999999888998888999999999999999999999999999999999999999999999999999


Q ss_pred             EEcccceEEEEeeeeEEEEEEEecCCceEEEEEeEEEEEEceeeEEEEeccceeeeccEEeEEEEcc-----CCCccccc
Q 000244         1037 IHRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFP-----EGDVFSFY 1111 (1799)
Q Consensus      1037 V~~~~G~Vta~~~G~t~It~~v~~~~g~~~~e~~~~V~V~~l~~IrI~a~~~rl~~G~~mpv~~~g~-----~g~pfsf~ 1111 (1799)
                      ++. ++++++.++|++++.++..-.+|.+ +++..-+.+..+.|+-+.+....+.+|....+++++.     +..+|.|.
T Consensus       399 ie~-s~~l~~~apg~ttiy~~~ivG~gav-~~qti~lsv~glPgi~l~aas~~v~tgdrvtl~~v~~spg~ede~~f~fi  476 (679)
T KOG1833|consen  399 IEP-SILLTSSAPGYTTIYGTVIVGDGAV-TEQTIVLSVAGLPGIILSAASRKVETGDRVTLRLVGVSPGAEDEEPFAFI  476 (679)
T ss_pred             ccc-ccceEeeccCCcceeeEEEEecCee-EEEEEEeeecCcCceeeecccceeecCceEEEEEEeecCCccccchhhhc
Confidence            999 9999999999999999544336665 4667778888888899999999999999998988764     24666655


Q ss_pred             ceee--EEEEEECCcceeEEEecccccccccccccccccceeecccccccccceEEEEEEccceEEEEEEEEEEecCCCC
Q 000244         1112 ELCR--NYNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSCDFVSDS 1189 (1799)
Q Consensus      1112 n~~l--~f~Ws~s~~~vl~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~v~v~~~~~G~t~I~vtv~~~~~s~~ 1189 (1799)
                      ....  .-+|.-+  -++.+..+                   .+      .           .|                
T Consensus       477 ~~vvpv~~~~~e~--p~Lnlsar-------------------~~------~-----------t~----------------  502 (679)
T KOG1833|consen  477 KAVVPVKSHRNEV--PLLNLSAR-------------------KH------F-----------TG----------------  502 (679)
T ss_pred             cceeEEeeccCcC--cccChhhh-------------------cc------c-----------cc----------------
Confidence            5542  2234300  00000000                   00      0           00                


Q ss_pred             cccceeeeeeEEEEEEecccccccCCceeccCCCCcccccccCCcccccccccCCceeEEEEEeecccCCCCccccccce
Q 000244         1190 YSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPSSSESHGQWDSQSHKGSIVYSLLKFCSEKNEAASKDDI 1269 (1799)
Q Consensus      1190 ~~~~~~lsasi~I~Vve~L~L~~~~p~~~~l~P~~~~~~llP~s~~~l~~t~~~~gs~~i~Y~il~~~~~~~~v~~~d~~ 1269 (1799)
                        .-..|+++-.+++...+.+         +.|+..-         .      +-+     +     |        .|  
T Consensus       503 --rl~tF~t~t~~~~e~gl~v---------~~~~~di---------n------~~~-----v-----~--------~d--  536 (679)
T KOG1833|consen  503 --RLSTFTTETTITVEDGLSV---------VQPEMDI---------N------TVR-----V-----A--------PD--  536 (679)
T ss_pred             --ccCcceecceeEEeccceE---------EecccCC---------c------cce-----e-----c--------CC--
Confidence              0122444444444444444         2332210         0      000     0     1        11  


Q ss_pred             ecCCCeEEeeCcceeEEEEEEeccCcceeEEEEEEEcceeEEEEEec-CCcceeeeecCcEEEEEEEEeccCCCcccccc
Q 000244         1270 SIDGDTIKTTSSNHLACIQAKDRSSGRIEIASCVRVAEVAQIRISNR-YPLNVIHLAVGAECEIPISYYDALGTPFHEAH 1348 (1799)
Q Consensus      1270 ~I~~g~i~t~~~~G~a~i~v~d~~~g~qt~~~~V~Vs~V~~l~i~~~-~~~~~~~lpvG~s~~~~V~~~D~~G~~F~~~~ 1348 (1799)
                        +++..++....--+++.-.|...+   +.++++++.+.+.|...+ .+.+....++   +......++-.+-+|.+.+
T Consensus       537 --N~~l~ktt~~lqA~l~~~~d~tS~---ia~~~~~s~v~q~r~ks~~ip~h~~dsai---le~~~~~v~~l~vt~l~vh  608 (679)
T KOG1833|consen  537 --NSQLKKTTAWLQASLSVESDFTSR---IAISADGSLVTQGREKSAAIPVHNVDSAI---LETVLIPVTVLRVTSLDVH  608 (679)
T ss_pred             --CccceeEeecccceEEEeeccccc---eEeecchhhhhccccCCCCCcccccchhh---heeecceeeeeeeEeeccc
Confidence              222223333333355555555433   778899999988887655 2444444454   4445556667777777777


Q ss_pred             ceEEEEEEEceeeEEEEEeecCCCcEEEEEEeeeeeEEEEEEeccCCCceeEEEEeeeeEEecCCCeEEec
Q 000244         1349 NVILYHAETNYHDVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVSVGAQLYPQNPVLHVG 1419 (1799)
Q Consensus      1349 ~~i~l~~~~n~~dlv~i~~~~~~n~t~~v~av~~G~t~L~v~d~~~~~i~dyi~v~V~~~I~P~~~~L~vG 1419 (1799)
                      ....++.+.++.+++.+..+.... .-+++..+.|.++.+++...+....+|+.+++.....|+..+.+.|
T Consensus       609 g~ta~~~~~ens~~~FLnt~~~~p-v~yv~~~arG~al~~~sns~n~rph~~vl~p~la~~~~Q~~~i~~~  678 (679)
T KOG1833|consen  609 GTTALKSAFENSPLIFLNTGAADP-VKYVPQEARGVALVSLSNSTNHRPHLLVLIPYLACCVVQHWLISIR  678 (679)
T ss_pred             chhhhhhhhcCCceEEeecccccc-eEEeeccccCceeeeeccCCCCCCcceEEeChhhcccccceEEecc
Confidence            666677888889999999875333 4578888999999999977777778999999999999998877665

>KOG1833 consensus Nuclear pore complex, gp210 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>smart00635 BID_2 Bacterial Ig-like domain 2	Back alignment and domain information

>PF02368 Big_2: Bacterial Ig-like domain (group 2); InterPro: IPR003343 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins as well as in some uncharacterised eukaryote proteins	Back alignment and domain information

>PF02368 Big_2: Bacterial Ig-like domain (group 2); InterPro: IPR003343 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins as well as in some uncharacterised eukaryote proteins	Back alignment and domain information

>smart00635 BID_2 Bacterial Ig-like domain 2	Back alignment and domain information

>TIGR00864 PCC polycystin cation channel protein	Back alignment and domain information

>TIGR00864 PCC polycystin cation channel protein	Back alignment and domain information

>COG5492 Bacterial surface proteins containing Ig-like domains [Cell motility and secretion]	Back alignment and domain information

>COG5492 Bacterial surface proteins containing Ig-like domains [Cell motility and secretion]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1799
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
3ncx_A		189	Intimin, intimin adherence protein; intimin TIR, c	2e-11

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 74.5 bits (182), Expect = 2e-13
 Identities = 113/754 (14%), Positives = 205/754 (27%), Gaps = 254/754 (33%)

Query: 7   ETDGSSHH---LLHVPLKDSPLSDCGGLCGDLDVQ-IELENSGAFSDLYVVKGIGIGHEM 62
           ET    +    +L V               + D + ++       S   +   I     +
Sbjct: 10  ETGEHQYQYKDILSVFEDA--------FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61

Query: 63  VSVHLLETEFMHMADSILLTVAEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVALPS 122
                L   F       LL+       +    V   V   L+   K +   I      PS
Sbjct: 62  SGTLRL---F-----WTLLS-------KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106

Query: 123 PHHRWSVSNSSVAQVDN-------------MMGLTQALRLGQTA--VIVEDTRVAGHTQV 167
              R  +        DN              + L QAL   + A  V+++    +G T  
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT-W 165

Query: 168 SSLNVVLPDTL---------WLYISPLSISGDPVEGTKAIPSVARWFVVSGFQYLIQMKV 218
            +L+V L   +         WL +   +     +E  + +                    
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-------------LYQIDPN 212

Query: 219 FSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDL-VLKHGWRNSRILKA---TSQGL 274
           ++               I+    +    + +   N L VL +   N++   A   + + L
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPY--ENCLLVLLNVQ-NAKAWNAFNLSCKIL 269

Query: 275 GKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSESILLPWAPGIYQEVEL 334
             LT   T F  + D           +    +  + D+     +S+LL +     Q++  
Sbjct: 270 --LT---TRFKQVTDFLSAATTTHISLDHHSMTLTPDE----VKSLLLKYLDCRPQDLPR 320

Query: 335 MATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEI--VIE 392
                            +      I  S      + G AT      +   N D++  +IE
Sbjct: 321 EVLTT------------NPRRLSIIAES-----IRDGLATWDN---WKHVNCDKLTTIIE 360

Query: 393 VSTPSSMVMLRNF-PVETVVGSHLQAAVTMKTLNGAYFYRCDAFSSSVN---------WK 442
            S       L    P E             +      F R   F  S +         W 
Sbjct: 361 SS-------LNVLEPAE------------YR----KMFDRLSVFPPSAHIPTILLSLIWF 397

Query: 443 AGS--ESFIVLN------ATKKQP----------FLDKLGTVEHDISLHGPPCSWAHLYA 484
                +  +V+N        +KQP          +L+    +E++ +LH           
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH----------- 446

Query: 485 SSSGRTML-HATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFN- 542
               R+++ H  + K +   D                  PP +     D      Y+++ 
Sbjct: 447 ----RSIVDHYNIPKTFDSDDLI----------------PPYL-----D-----QYFYSH 476

Query: 543 ----LGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHAS 598
               L   E   +M     ++L                   D  F+E       K  H  
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFL-------------------DFRFLE------QKIRH-- 509

Query: 599 DGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGDDHP------------LPAVAEV 646
                     ++ N  G    TL   +  +K    + D+ P            LP + E 
Sbjct: 510 --------DSTAWNASGSILNTLQQLKF-YKP--YICDNDPKYERLVNAILDFLPKIEEN 558

Query: 647 SLSVTCSFPASIALLVDEPVNERKVIQTAAQADR 680
            +    +    IAL+ +   +E    +   Q  R
Sbjct: 559 LICSKYTDLLRIALMAE---DEAIFEEAHKQVQR 589

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3ncx_A Intimin, intimin adherence protein; intimin TIR, cell adhesion; 2.60A {Escherichia coli O157} PDB: 2zqk_A 3ncw_A 2zwk_A Length = 189	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1799
d1f00i2		89	b.1.14.1 (I:753-841) Intimin {Escherichia coli [Ta	2e-05

>d1f00i2 b.1.14.1 (I:753-841) Intimin {Escherichia coli [TaxId: 562]} Length = 89	Back information, alignment and structure


class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Invasin/intimin cell-adhesion fragments
family: Invasin/intimin cell-adhesion fragments
domain: Intimin
species: Escherichia coli [TaxId: 562]

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 315 GVSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITA-SGVVQAKKPGKA 373
           G      LP     Y +V L A+G     +  Y W S++ A  S+ A SG V  K+ G  
Sbjct: 13  GTGVKGKLPTVWLQYGQVNLKASG----GNGKYTWRSANPAIASVDASSGQVTLKEKGTT 68

Query: 374 TVKVVS 379
           T+ V+S
Sbjct: 69  TISVIS 74

PyMOL of d1f00i2

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1799
d1f00i2		89	Intimin {Escherichia coli [TaxId: 562]}	98.11
d1f00i2		89	Intimin {Escherichia coli [TaxId: 562]}	96.13
d1cwva4		91	Invasin {Yersinia pseudotuberculosis [TaxId: 633]}	83.11

>d1f00i2 b.1.14.1 (I:753-841) Intimin {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Invasin/intimin cell-adhesion fragments
family: Invasin/intimin cell-adhesion fragments
domain: Intimin
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=3.8e-06  Score=59.91  Aligned_cols=67  Identities=36%  Similarity=0.518  Sum_probs=54.1

Q ss_pred             ECCCCCCEEEEEEEEECCCCCCCCCEEEEECCCEEEEEEC-CCEEEECCCCEEEEEEEEECCCCCEEEEEEEEECC
Q ss_conf             0276672157999992468899860699606951499900-70799447754999999303874034799999566
Q 000244          322 LPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITA-SGVVQAKKPGKATVKVVSIFDSFNYDEIVIEVSTP  396 (1799)
Q Consensus       322 lP~~~~~~q~~~L~a~GGsg~~~~~y~WsSsn~~VasV~~-~Gvvt~~~~G~t~I~a~d~~n~~n~~~~~V~V~~p  396 (1799)
                      +|.....+.+++|.++||.+    .|.|+|+|+.||+|+. .|++++.+.|+++|+|.+..+.    .+...|..|
T Consensus        20 ~~~~~~~~~~~~l~~~~~~~----~~twsSsd~~VAtVd~~~G~vta~~~G~a~Itat~~~g~----~at~tvt~~   87 (89)
T d1f00i2          20 LPTVWLQYGQVNLKASGGNG----KYTWRSANPAIASVDASSGQVTLKEKGTTTISVISSDNQ----TATYTIATP   87 (89)
T ss_dssp             CCSEEETTCEEECCEESTTS----CEEEEESCTTTEEECTTTCEEEECSSSCEEEEEEETTTE----EEEEEECCC
T ss_pred             CCCEEEEEEEEEEEECCCCC----CEEEEECCCCEEEEECCCCEEEEEEEEEEEEEEEECCCC----EEEEEEECC
T ss_conf             77356620589987736897----289997999999997898899996608999999979999----999999857

PyMOL of d1f00i2

>d1f00i2 b.1.14.1 (I:753-841) Intimin {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1cwva4 b.1.14.1 (A:796-886) Invasin {Yersinia pseudotuberculosis [TaxId: 633]}	Back information, alignment and structure