Citrus Sinensis ID: 000255
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1778 | 2.2.26 [Sep-21-2011] | |||||||
| O23372 | 2335 | Probable histone-lysine N | yes | no | 0.947 | 0.721 | 0.637 | 0.0 | |
| Q9Y7R4 | 920 | Histone-lysine N-methyltr | yes | no | 0.064 | 0.125 | 0.361 | 6e-14 | |
| Q18221 | 1507 | Probable histone-lysine N | yes | no | 0.065 | 0.077 | 0.372 | 6e-13 | |
| Q99MY8 | 2958 | Histone-lysine N-methyltr | yes | no | 0.073 | 0.043 | 0.318 | 2e-12 | |
| Q9NR48 | 2969 | Histone-lysine N-methyltr | yes | no | 0.073 | 0.043 | 0.318 | 2e-12 | |
| Q9VYD1 | 2313 | Probable histone-lysine N | yes | no | 0.074 | 0.057 | 0.326 | 3e-12 | |
| Q4PB36 | 1468 | Histone-lysine N-methyltr | N/A | no | 0.061 | 0.074 | 0.335 | 4e-12 | |
| Q4I5R3 | 1263 | Histone-lysine N-methyltr | yes | no | 0.067 | 0.095 | 0.321 | 3e-11 | |
| Q1LY77 | 1844 | Histone-lysine N-methyltr | no | no | 0.042 | 0.040 | 0.430 | 4e-11 | |
| Q2GWF3 | 1076 | Histone-lysine N-methyltr | N/A | no | 0.066 | 0.109 | 0.340 | 4e-11 |
| >sp|O23372|ATXR3_ARATH Probable histone-lysine N-methyltransferase ATXR3 OS=Arabidopsis thaliana GN=ATXR3 PE=1 SV=2 | Back alignment and function desciption |
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Score = 2317 bits (6005), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1161/1822 (63%), Positives = 1404/1822 (77%), Gaps = 138/1822 (7%)
Query: 1 MEEDMDICDTPPHVPAVTDSSVGKWFYLDHCGMECGPSRLCDLKTLVEEGVLVSDHFIKH 60
ME DMDICDTPPH P +DSS+GKWFYLD+ G E GP+RL DLK L+E+G+L SDH IKH
Sbjct: 606 MEVDMDICDTPPHEPMASDSSLGKWFYLDYYGTEHGPARLSDLKALMEQGILFSDHMIKH 665
Query: 61 LDSNRWETVENAVSPLVTVNFPSITSDSVTQLVSPPEASGNLLADTGDTA------QSTG 114
D+NRW LV+PPEA GNLL D DT Q G
Sbjct: 666 SDNNRW-------------------------LVNPPEAPGNLLEDIADTTEAVCIEQGAG 700
Query: 115 EEFPVTLQSQCCPDGSAAAAESSEDLHIDVRVGALLDGFTVIPGKEIETLGE-------- 166
+ P + + PDG E+ ED ID+RV LLDG T+ PG+E ETLGE
Sbjct: 701 DSLPELVSVRTLPDGKEIFVENREDFQIDMRVENLLDGRTITPGREFETLGEALKVNVEF 760
Query: 167 -------------------------LKSGDKDHWVVCFDSDE---WFSGRWSCKGGDWKR 198
KS D +SDE WFSGRWSCKGGDW R
Sbjct: 761 EETRRCVTSEGVVGMFRPMKRAIEEFKSDD----AYGSESDEIGSWFSGRWSCKGGDWIR 816
Query: 199 NDEAAQDRCSRKKQVLNDGFPLCQMPKSGYEDPRWNQKDDLYYPSHSRRLDLPPWAYACP 258
DEA+QDR +KK VLNDGFPLC M KSG+EDPRW+ KDDLYYP S RL+LP WA++
Sbjct: 817 QDEASQDRYYKKKIVLNDGFPLCLMQKSGHEDPRWHHKDDLYYPLSSSRLELPLWAFSVV 876
Query: 259 DERNDGSGGSRSTQSKLAAVRGVKGTMLPVVRINACVVNDHGSFVSEPRSKVRAKERHSS 318
DERN RGVK ++L VVR+N+ VVND + +PR+KVR+KER S
Sbjct: 877 DERNQ--------------TRGVKASLLSVVRLNSLVVNDQVPPIPDPRAKVRSKERCPS 922
Query: 319 RSARSYSSANDVRRSSAESDSHSKARNNQDSQGSWKSIACINTPKDRLCTVDDLQLQLGE 378
R AR +++D +R S ES S S A QDSQG WK+ +NTP+DRLCTVDDLQL +G+
Sbjct: 923 RPARPSPASSDSKRESVESHSQSTASTGQDSQGLWKTDTSVNTPRDRLCTVDDLQLHIGD 982
Query: 379 WYYLDGAGHERGPSSFSELQVLVDQGCIQKHTSVFRKFDKVWVPLTFATETSASTVRNHG 438
W+Y DGAG E+GP SFSELQ LV++G I+ H+SVFRK DK+WVP+T T++ + G
Sbjct: 983 WFYTDGAGQEQGPLSFSELQKLVEKGFIKSHSSVFRKSDKIWVPVTSITKSPETIAMLRG 1042
Query: 439 EKIMPSGDSSGLPPTQSQDAVLGESNNNVNSNAFHTMHPQFIGYTRGKLHELVMKSYKNR 498
+ GL +++QD E + ++NS FH +HPQF+GY RGKLH+LVMK++K+R
Sbjct: 1043 KTPALPSACQGLVVSETQDFKYSEMDTSLNS--FHGVHPQFLGYFRGKLHQLVMKTFKSR 1100
Query: 499 EFAAAINEVLDPWINAKQPKKETE-HVYRKSEGDTRAGKRARLLVRESDGDEETEEELQT 557
+F+AAIN+V+D WI+A+QPKKE+E ++Y+ SE ++ KRARL+ ES D E E+
Sbjct: 1101 DFSAAINDVVDSWIHARQPKKESEKYMYQSSELNSCYTKRARLMAGESGEDSEMEDTQMF 1160
Query: 558 IQDESTFEDLCGDASFPGEESASSAIESGGWGLLDGHTLAHVFHFLRSDMKSLAFASLTC 617
+DE TFEDLCGD +F E + S+ WGLLDGH LA VFH LR D+KSLAFAS+TC
Sbjct: 1161 QKDELTFEDLCGDLTFNIEGNRSAGTVGIYWGLLDGHALARVFHMLRYDVKSLAFASMTC 1220
Query: 618 RHWRAAVRFYKGISRQVDLSSVGPNCTDSLIRKTLNAFDKEKLNSILLVGCTNITSGMLE 677
RHW+A + YK ISRQVDLSS+GP+CTDS +R +N ++KEK++SI+LVGCTN+T+ MLE
Sbjct: 1221 RHWKATINSYKDISRQVDLSSLGPSCTDSRLRSIMNTYNKEKIDSIILVGCTNVTASMLE 1280
Query: 678 EILQSFPHLSSIDIRGCGQFGELALKFPNINWVKSQKSRGAKFNDSRSKIRSLKQITEKS 737
EIL+ P +SS+DI GC QFG+L + + N++W++ Q +R + + S+IRSLKQ T+
Sbjct: 1281 EILRLHPRISSVDITGCSQFGDLTVNYKNVSWLRCQNTRSGELH---SRIRSLKQTTD-- 1335
Query: 738 SSAPKSKGLGDDMDDFGDLKDYFESVDKRDSANQSFRRSLYQRSKVFDARKSSSILSRDA 797
KSKGLG D DDFG+LKDYF+ V+KRDSANQ FRRSLY+RSK++DAR+SS+ILSRDA
Sbjct: 1336 --VAKSKGLGGDTDDFGNLKDYFDRVEKRDSANQLFRRSLYKRSKLYDARRSSAILSRDA 1393
Query: 798 RMRRWSIKKSENGYKRMEEFLASSLKEIMRVNTFEFFVPKVAEIEGRMKKGYYISHGLGS 857
R+RRW+IKKSE+GYKR+EEFLASSL+ IM+ NTF+FF KV++IE +MK GYY+SHGL S
Sbjct: 1394 RIRRWAIKKSEHGYKRVEEFLASSLRGIMKQNTFDFFALKVSQIEEKMKNGYYVSHGLRS 1453
Query: 858 VKDDISRMCRDAIKAKNRGSAGDMNRITTLFIQLATRLEQGAKSSYYEREEMMKSWKDES 917
VK+DISRMCR+AIK +E+MKSW+D S
Sbjct: 1454 VKEDISRMCREAIK-----------------------------------DELMKSWQDGS 1478
Query: 918 PAGLYSATSKYKKKLSKMVSERKYMNRSNGTSLANGDFDYGEYASDREIRKRLSKLNRKS 977
GL SAT KY KKLSK V+E+KYM+R++ T NG DYGEYASDREI++RLSKLNRKS
Sbjct: 1479 --GLSSAT-KYNKKLSKTVAEKKYMSRTSDTFGVNGASDYGEYASDREIKRRLSKLNRKS 1535
Query: 978 LDSGSETSDDLDGSSEDGKSDSESTVSDTDSDMDFRSDGRARESRGAGDFTTDEGLD-FS 1036
S S+TS + S++GKSD+ S+ S ++S+ D RS+GR+++ R FT D+ D +
Sbjct: 1536 FSSESDTSSE---LSDNGKSDNYSSASASESESDIRSEGRSQDLRIEKYFTADDSFDSVT 1592
Query: 1037 DDREWGARMTKASLVPPVTRKYEVIDQYVIVADEEDVRRKMRVSLPEDYAEKLNAQKNGS 1096
++REWGARMTKASLVPPVTRKYEVI++Y IVADEE+V+RKMRVSLPEDY EKLNAQ+NG
Sbjct: 1593 EEREWGARMTKASLVPPVTRKYEVIEKYAIVADEEEVQRKMRVSLPEDYGEKLNAQRNGI 1652
Query: 1097 EELDMELPEVKDYKPRKQLGDQVFEQEVYGIDPYTHNLLLDSMPDELDWNLLEKHLFIED 1156
EELDMELPEVK+YKPRK LGD+V EQEVYGIDPYTHNLLLDSMP ELDW+L +KH FIED
Sbjct: 1653 EELDMELPEVKEYKPRKLLGDEVLEQEVYGIDPYTHNLLLDSMPGELDWSLQDKHSFIED 1712
Query: 1157 VLLRTLNKQVRHFTGTGNTPMMYPLQPVIEEIEKEAVDDCDVRTMKMCRGILKAMDSRPD 1216
V+LRTLN+QVR FTG+G+TPM++PL+PVIEE+++ A ++CD+RTMKMC+G+LK ++SR D
Sbjct: 1713 VVLRTLNRQVRLFTGSGSTPMVFPLRPVIEELKESAREECDIRTMKMCQGVLKEIESRSD 1772
Query: 1217 DKYVAYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEF 1276
DKYV+YRKGLGVVCNKEGGFGE+DFVVEFLGEVYPVWKWFEKQDGIRSLQ+N DPAPEF
Sbjct: 1773 DKYVSYRKGLGVVCNKEGGFGEEDFVVEFLGEVYPVWKWFEKQDGIRSLQENKTDPAPEF 1832
Query: 1277 YNIYLERPKGDADGYDLVVVDAMHKANYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRG 1336
YNIYLERPKGDADGYDLVVVDAMH ANYASRICHSCRPNCEAKVTAVDGHYQIGIY+VR
Sbjct: 1833 YNIYLERPKGDADGYDLVVVDAMHMANYASRICHSCRPNCEAKVTAVDGHYQIGIYSVRA 1892
Query: 1337 IHYGEEITFDYNSVTESKEEYEASVCLCGSQVCRGSYLNLTGEGAFEKVLKELHGLLDRH 1396
I YGEEITFDYNSVTESKEEYEASVCLCGSQVCRGSYLNLTGEGAF+KVLK+ HGLL+RH
Sbjct: 1893 IEYGEEITFDYNSVTESKEEYEASVCLCGSQVCRGSYLNLTGEGAFQKVLKDWHGLLERH 1952
Query: 1397 QLMLEACELNSVSEEDYLELGRAGLGSCLLGGLPNWVVAYSARLVRFINLERTKLPEEIL 1456
+LMLEAC LNSVSEEDYLELGRAGLGSCLLGGLP+W++AYSARLVRFIN ERTKLPEEIL
Sbjct: 1953 RLMLEACVLNSVSEEDYLELGRAGLGSCLLGGLPDWMIAYSARLVRFINFERTKLPEEIL 2012
Query: 1457 RHNLEEKRKYFSDICLEVEKSDAEVQAEGVYNQRLQNLAVTLDKVRYVMRCVFGDPKKAP 1516
+HNLEEKRKYFSDI L+VEKSDAEVQAEGVYNQRLQNLAVTLDKVRYVMR VFGDPK AP
Sbjct: 2013 KHNLEEKRKYFSDIHLDVEKSDAEVQAEGVYNQRLQNLAVTLDKVRYVMRHVFGDPKNAP 2072
Query: 1517 PPVERLSPEETVSFLWKGEGSLVEELIQCMAPHVEEDVLNDLKSKIQAHDPSGSEDIQRE 1576
PP+ERL+PEETVSF+W G+GSLV+EL+Q ++PH+EE LN+L+SKI HDPSGS D+ +E
Sbjct: 2073 PPLERLTPEETVSFVWNGDGSLVDELLQSLSPHLEEGPLNELRSKIHGHDPSGSADVLKE 2132
Query: 1577 LRKSLLWLRDEVRNLPCTYKCRHDAAADLIHIYAYTKCFFRVQEYKAFTSPPVYISPLDL 1636
L++SLLWLRDE+R+LPCTYKCR+DAAADLIHIYAYTKCFF+V+EY++F S PV+ISPLDL
Sbjct: 2133 LQRSLLWLRDEIRDLPCTYKCRNDAAADLIHIYAYTKCFFKVREYQSFISSPVHISPLDL 2192
Query: 1637 GPKYADKLGADLQVYRKTYGENYCLGQLIFWHIQTNADPDCTLARASRGCLSLPDIGSFY 1696
G KYADKLG ++ YRKTYGENYCLGQLI+W+ QTN DPD TL +A+RGCLSLPD+ SFY
Sbjct: 2193 GAKYADKLGESIKEYRKTYGENYCLGQLIYWYNQTNTDPDLTLVKATRGCLSLPDVASFY 2252
Query: 1697 AKVQKPSRHRVYGPKTVRFMLSRMEKQPQRPWPKDRIWAFKSSPRIFGSPMLDSSLTG-C 1755
AK QKPS+HRVYGPKTV+ M+S+M KQPQRPWPKD+IW FKS+PR+FGSPM D+ L
Sbjct: 2253 AKAQKPSKHRVYGPKTVKTMVSQMSKQPQRPWPKDKIWTFKSTPRVFGSPMFDAVLNNSS 2312
Query: 1756 PLDREMVHWLKHRPAIFQAMWD 1777
LDRE++ WL++R +FQA WD
Sbjct: 2313 SLDRELLQWLRNRRHVFQATWD 2334
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Histone methyltransferase. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3 |
| >sp|Q9Y7R4|SET1_SCHPO Histone-lysine N-methyltransferase, H3 lysine-4 specific OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=set1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q18221|SET2_CAEEL Probable histone-lysine N-methyltransferase set-2 OS=Caenorhabditis elegans GN=set-2 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q99MY8|ASH1L_MOUSE Histone-lysine N-methyltransferase ASH1L OS=Mus musculus GN=Ash1l PE=1 SV=3 | Back alignment and function description |
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| >sp|Q9NR48|ASH1L_HUMAN Histone-lysine N-methyltransferase ASH1L OS=Homo sapiens GN=ASH1L PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9VYD1|C1716_DROME Probable histone-lysine N-methyltransferase CG1716 OS=Drosophila melanogaster GN=Set2 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q4PB36|SET1_USTMA Histone-lysine N-methyltransferase, H3 lysine-4 specific OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SET1 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q4I5R3|SET1_GIBZE Histone-lysine N-methyltransferase, H3 lysine-4 specific OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=SET1 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q1LY77|SE1BA_DANRE Histone-lysine N-methyltransferase SETD1B-A OS=Danio rerio GN=setd1ba PE=1 SV=2 | Back alignment and function description |
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| >sp|Q2GWF3|SET1_CHAGB Histone-lysine N-methyltransferase, H3 lysine-4 specific OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=SET1 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1778 | ||||||
| 359485692 | 2367 | PREDICTED: probable histone-lysine N-met | 0.988 | 0.742 | 0.728 | 0.0 | |
| 224132582 | 2476 | SET domain protein [Populus trichocarpa] | 0.979 | 0.703 | 0.722 | 0.0 | |
| 255549293 | 2430 | huntingtin interacting protein, putative | 0.967 | 0.708 | 0.712 | 0.0 | |
| 449453666 | 2336 | PREDICTED: probable histone-lysine N-met | 0.967 | 0.736 | 0.689 | 0.0 | |
| 449493199 | 2336 | PREDICTED: probable histone-lysine N-met | 0.967 | 0.736 | 0.689 | 0.0 | |
| 356515246 | 2325 | PREDICTED: probable histone-lysine N-met | 0.973 | 0.744 | 0.691 | 0.0 | |
| 356547055 | 2351 | PREDICTED: probable histone-lysine N-met | 0.970 | 0.733 | 0.689 | 0.0 | |
| 356544844 | 2331 | PREDICTED: probable histone-lysine N-met | 0.973 | 0.742 | 0.686 | 0.0 | |
| 357453545 | 2512 | Histone-lysine N-methyltransferase E(z) | 0.986 | 0.698 | 0.666 | 0.0 | |
| 186511821 | 2335 | putative histone-lysine N-methyltransfer | 0.947 | 0.721 | 0.637 | 0.0 |
| >gi|359485692|ref|XP_002275342.2| PREDICTED: probable histone-lysine N-methyltransferase ATXR3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2650 bits (6870), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1335/1832 (72%), Positives = 1526/1832 (83%), Gaps = 74/1832 (4%)
Query: 1 MEEDMDICDTPPHVPAVTDSSVGKWFYLDHCGMECGPSRLCDLKTLVEEGVLVSDHFIKH 60
MEEDMDICDTPPHVP V DS+ GKWFYLDH GME GPS+LCDLK LVEEGVLVSDH IKH
Sbjct: 556 MEEDMDICDTPPHVPLVADSTTGKWFYLDHFGMERGPSKLCDLKKLVEEGVLVSDHLIKH 615
Query: 61 LDSNRWETVENAVSPLVTVNFPSITSDSVTQLVSPPEASGNLLADTGDTAQSTG---EEF 117
+DS+RW T+ENA SPLV VNFPSI SD+VTQLVSPPEA GNLLA+ GD +S+ EE
Sbjct: 616 VDSDRWLTIENAASPLVPVNFPSIVSDTVTQLVSPPEAPGNLLAEAGDATESSKLLDEET 675
Query: 118 PVTL-QSQCCPDGSAAAAESSEDLHIDVRVGALLDGFTVIPGKEIETLGEL-----KSGD 171
P TL QS C + S+ A+E EDL ID RV ALL GFTVIPG+E+ETLG L + G+
Sbjct: 676 PATLLQSMSCNNDSSTASEPLEDLQIDERVRALLKGFTVIPGRELETLGGLSWHQPRIGE 735
Query: 172 K-----------------------------DHWVVCF-DSDEWFSGRWSCKGGDWKRNDE 201
+ + F D +WFS RW+ KGGDWKRNDE
Sbjct: 736 QFDQRTDEFSRYPEITSKEASDSRSSTSSDKDYAFAFGDFSDWFSARWASKGGDWKRNDE 795
Query: 202 AAQDRCSRKKQVLNDGFPLCQMPKSGYEDPRWNQKDDLYYPSHSRRLDLPPWAYACPDER 261
+AQDR SRKK VLNDG+PLCQMPKSGYEDPRW++KD+LYYPSH R+LDLP WA++ PDER
Sbjct: 796 SAQDRLSRKKLVLNDGYPLCQMPKSGYEDPRWHRKDELYYPSHGRKLDLPIWAFSWPDER 855
Query: 262 NDGSGGSRSTQSKLAAVRGVKGTMLPVVRINACVVNDHGSFVSEPRSKVRAKERHSSRSA 321
+D + SR++Q K VRGVKG+MLPVVRINACV SEP +KVR K+R+SSRSA
Sbjct: 856 SDSNSASRASQIK-PVVRGVKGSMLPVVRINACV--------SEPPAKVRGKDRYSSRSA 906
Query: 322 RSYSSANDVRRSSAESDSHSKARNNQDSQGSWKSIACINTPKDRLCTVDDLQLQLGEWYY 381
R+YSS DV+RSSAES SHSK+ + DSQGSWK I INTPKDRLCT +DLQL LG+WYY
Sbjct: 907 RAYSSTTDVKRSSAESASHSKSVSENDSQGSWKCITSINTPKDRLCTAEDLQLHLGDWYY 966
Query: 382 LDGAGHERGPSSFSELQVLVDQGCIQKHTSVFRKFDKVWVPLTFATETSASTVRNHGEKI 441
LDGAGHE+GPSSFSELQ LVDQG IQKH+SVFRK DK+WVP+T A + + V+ +
Sbjct: 967 LDGAGHEQGPSSFSELQALVDQGSIQKHSSVFRKNDKIWVPITSAADVPDAAVKIQPQNN 1026
Query: 442 MPSGDSSGLPPTQSQDAVLGESNNNVNSNAFHTMHPQFIGYTRGKLHELVMKSYKNREFA 501
+ S D SG QS +G NN S + H++HPQFIGYT GKLHELVMKSYK+REFA
Sbjct: 1027 VTSTDCSGPSLAQSLAGAIG--GNNTISRSLHSLHPQFIGYTCGKLHELVMKSYKSREFA 1084
Query: 502 AAINEVLDPWINAKQPKKETEH--VYRKSEGDTR-----------AGKRARLLVRESDGD 548
AAINEVLDPWIN+KQPKKE + V S D AG R R LV S+ D
Sbjct: 1085 AAINEVLDPWINSKQPKKEMANSAVSNSSLHDLNKFRTSGMSHICAGIRGRWLVDGSEDD 1144
Query: 549 EETEEELQTIQ-DESTFEDLCGDASFPGEESASSAIESGGWGLLDGHTLAHVFHFLRSDM 607
E EE++ +Q DESTFEDLC DA+F E+ A + + S WGLLDG+ LA VFHFLR+D+
Sbjct: 1145 YEMEEDVLLVQKDESTFEDLCSDATFYQEDIALAEMGSENWGLLDGNVLARVFHFLRTDV 1204
Query: 608 KSLAFASLTCRHWRAAVRFYKGISRQVDLSSVGPNCTDSLIRKTLNAFDKEKLNSILLVG 667
KSLAFA+LTC+HWRAAVRFYKG+SRQVDLSSVG CTDS I +N ++KE++ S++L+G
Sbjct: 1205 KSLAFAALTCKHWRAAVRFYKGVSRQVDLSSVGSLCTDSTIWSMINGYNKERITSMILIG 1264
Query: 668 CTNITSGMLEEILQSFPHLSSIDIRGCGQFGELALKFPNINWVKSQKSRGAKFNDSRSKI 727
CTNIT GMLE++L SFP LSSIDIRGC QF ELA KF N+NW+KS+ F +S SKI
Sbjct: 1265 CTNITPGMLEDVLGSFPSLSSIDIRGCSQFWELADKFSNLNWIKSRIRVMKVFEESYSKI 1324
Query: 728 RSLKQITEKSSSAPKSKGLGDDMDDFGDLKDYFESVDKRDSANQSFRRSLYQRSKVFDAR 787
++LKQITE+ S + KG+G +DD +LK+YF+SVD+R+SA+QSFRRS Y+RSK+FDAR
Sbjct: 1325 KALKQITERPSVSKPLKGMGSHVDDSSELKEYFDSVDRRESASQSFRRSYYKRSKLFDAR 1384
Query: 788 KSSSILSRDARMRRWSIKKSENGYKRMEEFLASSLKEIMRVNTFEFFVPKVAEIEGRMKK 847
+SSSILSRDARMRRWSIK SENGYKRMEEFLASSL++IM+ NTF+FFVPKVAEIE RMK
Sbjct: 1385 RSSSILSRDARMRRWSIKNSENGYKRMEEFLASSLRDIMKENTFDFFVPKVAEIEDRMKN 1444
Query: 848 GYYISHGLGSVKDDISRMCRDAIKAKNRGSAGDMNRITTLFIQLATRLEQGAKSSYYERE 907
GYY HGL SVK+DISRMCRDAIKAKNRG +G+MNRI TLFI+LAT LE+G+KSS RE
Sbjct: 1445 GYYAGHGLSSVKEDISRMCRDAIKAKNRGDSGNMNRIITLFIRLATCLEEGSKSSN-GRE 1503
Query: 908 EMMKSWKDESPAGLYSATSKYKKKLSKMVSERKYMNRSNGTSLANGDFDYGEYASDREIR 967
EM++ WKDESP+GL S+ SKYKKKL+K+V+ERK+ RSNG S DYGEYASDREIR
Sbjct: 1504 EMVRRWKDESPSGLCSSGSKYKKKLNKIVTERKH--RSNGGS------DYGEYASDREIR 1555
Query: 968 KRLSKLNRKSLDSGSETSDDLDGSSEDGKSDSESTVSDTDSDMDFRSDGRARESRGAGDF 1027
+RLSKLN+KS+DSGS+TSDDLD SSE G S SEST SDT+SD+DFRS+G ESR G F
Sbjct: 1556 RRLSKLNKKSMDSGSDTSDDLDRSSEGGSSGSESTASDTESDLDFRSEGGVAESRVDGYF 1615
Query: 1028 TTDEGL-DFSDDREWGARMTKASLVPPVTRKYEVIDQYVIVADEEDVRRKMRVSLPEDYA 1086
T DEGL +DDREWGARMTK SLVPPVTRKYEVI+QYVIVADE++V+RKM+VSLPE Y
Sbjct: 1616 TADEGLYSMTDDREWGARMTKVSLVPPVTRKYEVIEQYVIVADEDEVQRKMKVSLPEHYN 1675
Query: 1087 EKLNAQKNGSEELDMELPEVKDYKPRKQLGDQVFEQEVYGIDPYTHNLLLDSMPDELDWN 1146
EKL AQKNG+EE DME+PEVKDYKPRKQLGD+V EQEVYGIDPYTHNLLLDSMP+ELDW
Sbjct: 1676 EKLTAQKNGTEESDMEIPEVKDYKPRKQLGDEVIEQEVYGIDPYTHNLLLDSMPEELDWP 1735
Query: 1147 LLEKHLFIEDVLLRTLNKQVRHFTGTGNTPMMYPLQPVIEEIEKEAVDDCDVRTMKMCRG 1206
LLEKHLFIE+VLL TLNKQVRHFTGTGNTPMMY LQPV+E+I+K A ++ D+RT+KMC+G
Sbjct: 1736 LLEKHLFIEEVLLCTLNKQVRHFTGTGNTPMMYHLQPVVEDIQKTAEEELDLRTLKMCQG 1795
Query: 1207 ILKAMDSRPDDKYVAYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQ 1266
ILKAM+SRPDD YVAYRKGLGVVCNKEGGF ++DFVVEFLGEVYP WKWFEKQDGIRSLQ
Sbjct: 1796 ILKAMNSRPDDNYVAYRKGLGVVCNKEGGFSQEDFVVEFLGEVYPAWKWFEKQDGIRSLQ 1855
Query: 1267 KNNEDPAPEFYNIYLERPKGDADGYDLVVVDAMHKANYASRICHSCRPNCEAKVTAVDGH 1326
KN++DPAPEFYNIYLERPKGDADGYDLVVVDAMHKANYASRICHSCRPNCEAKVTAV+G
Sbjct: 1856 KNSKDPAPEFYNIYLERPKGDADGYDLVVVDAMHKANYASRICHSCRPNCEAKVTAVEGQ 1915
Query: 1327 YQIGIYTVRGIHYGEEITFDYNSVTESKEEYEASVCLCGSQVCRGSYLNLTGEGAFEKVL 1386
YQIGIYTVR I YGEEITFDYNSVTESKEEYEASVCLCGSQVCRGSYLNLTGEGAF+KVL
Sbjct: 1916 YQIGIYTVRQIQYGEEITFDYNSVTESKEEYEASVCLCGSQVCRGSYLNLTGEGAFQKVL 1975
Query: 1387 KELHGLLDRHQLMLEACELNSVSEEDYLELGRAGLGSCLLGGLPNWVVAYSARLVRFINL 1446
KE HG+LDR+Q+M EACELN VSEEDY++LGRAGLGSCLLGGLP+W++AY+ARLVRFIN
Sbjct: 1976 KECHGILDRYQMMFEACELNMVSEEDYIDLGRAGLGSCLLGGLPDWLIAYAARLVRFINF 2035
Query: 1447 ERTKLPEEILRHNLEEKRKYFSDICLEVEKSDAEVQAEGVYNQRLQNLAVTLDKVRYVMR 1506
ERTKLPEEILRH+L+EKRKYF+DI LEVEKSDAE+QAEGVYNQRLQNLA+TLDKVRYVMR
Sbjct: 2036 ERTKLPEEILRHSLDEKRKYFADISLEVEKSDAELQAEGVYNQRLQNLALTLDKVRYVMR 2095
Query: 1507 CVFGDPKKAPPPVERLSPEETVSFLWKGEGSLVEELIQCMAPHVEEDVLNDLKSKIQAHD 1566
CVFGDPKKAPPP+ERLS EE VSFLW GEGSLVEEL+QCMAPH+E+ +L++LK KI+AHD
Sbjct: 2096 CVFGDPKKAPPPLERLSAEEVVSFLWNGEGSLVEELLQCMAPHMEDGMLSELKPKIRAHD 2155
Query: 1567 PSGSEDIQRELRKSLLWLRDEVRNLPCTYKCRHDAAADLIHIYAYTKCFFRVQEYKAFTS 1626
PSGS+DI +EL+KSLLWLRDEVRNLPC YKCRHDAAADLIHIYAYTKCFFRV+EYK+ TS
Sbjct: 2156 PSGSDDIHKELQKSLLWLRDEVRNLPCNYKCRHDAAADLIHIYAYTKCFFRVREYKSVTS 2215
Query: 1627 PPVYISPLDLGPKYADKLGADLQVYRKTYGENYCLGQLIFWHIQTNADPDCTLARASRGC 1686
PPVYISPLDLGPKY+DKLG+ +Q Y KTYGENYCLGQLI+WH QTNADPDC LARASRGC
Sbjct: 2216 PPVYISPLDLGPKYSDKLGSGIQEYCKTYGENYCLGQLIYWHNQTNADPDCNLARASRGC 2275
Query: 1687 LSLPDIGSFYAKVQKPSRHRVYGPKTVRFMLSRMEKQPQRPWPKDRIWAFKSSPRIFGSP 1746
LSLPDIGSFYAKVQKPSR RVYGP+T+RFML+RMEKQPQR WPKDRIW+FKS P+IFGSP
Sbjct: 2276 LSLPDIGSFYAKVQKPSRQRVYGPRTLRFMLARMEKQPQRQWPKDRIWSFKSCPKIFGSP 2335
Query: 1747 MLDSSLTGCPLDREMVHWLKHRPAIFQAMWDR 1778
MLD+ L PLDREM+HWLK+RPA FQAMWDR
Sbjct: 2336 MLDAVLHNSPLDREMLHWLKNRPATFQAMWDR 2367
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224132582|ref|XP_002327831.1| SET domain protein [Populus trichocarpa] gi|222837240|gb|EEE75619.1| SET domain protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|255549293|ref|XP_002515700.1| huntingtin interacting protein, putative [Ricinus communis] gi|223545137|gb|EEF46647.1| huntingtin interacting protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|449453666|ref|XP_004144577.1| PREDICTED: probable histone-lysine N-methyltransferase ATXR3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449493199|ref|XP_004159219.1| PREDICTED: probable histone-lysine N-methyltransferase ATXR3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|356515246|ref|XP_003526312.1| PREDICTED: probable histone-lysine N-methyltransferase ATXR3-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356547055|ref|XP_003541933.1| PREDICTED: probable histone-lysine N-methyltransferase ATXR3-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356544844|ref|XP_003540857.1| PREDICTED: probable histone-lysine N-methyltransferase ATXR3-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|357453545|ref|XP_003597050.1| Histone-lysine N-methyltransferase E(z) [Medicago truncatula] gi|355486098|gb|AES67301.1| Histone-lysine N-methyltransferase E(z) [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|186511821|ref|NP_193253.4| putative histone-lysine N-methyltransferase ATXR3 [Arabidopsis thaliana] gi|229488102|sp|O23372.2|ATXR3_ARATH RecName: Full=Probable histone-lysine N-methyltransferase ATXR3; AltName: Full=Protein SET DOMAIN GROUP 2; AltName: Full=Trithorax-related protein 3; Short=TRX-related protein 3 gi|332658165|gb|AEE83565.1| putative histone-lysine N-methyltransferase ATXR3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1778 | ||||||
| TAIR|locus:2129755 | 2335 | SDG2 "SET domain protein 2" [A | 0.487 | 0.370 | 0.750 | 0.0 | |
| POMBASE|SPCC306.04c | 920 | set1 "histone lysine methyltra | 0.066 | 0.128 | 0.384 | 3e-11 | |
| TAIR|locus:2051769 | 363 | ASHH3 "histone-lysine N-methyl | 0.078 | 0.382 | 0.327 | 5.2e-08 | |
| UNIPROTKB|E2RMP9 | 2562 | SETD2 "Uncharacterized protein | 0.064 | 0.044 | 0.343 | 7.3e-08 | |
| UNIPROTKB|I3L895 | 323 | MLL "Uncharacterized protein" | 0.045 | 0.250 | 0.416 | 1.1e-07 | |
| TAIR|locus:2080462 | 352 | ASHH4 "histone-lysine N-methyl | 0.062 | 0.318 | 0.328 | 1.3e-07 | |
| DICTYBASE|DDB_G0268132 | 898 | DDB_G0268132 "SET domain-conta | 0.042 | 0.083 | 0.430 | 1.5e-07 | |
| CGD|CAL0005024 | 1040 | SET1 [Candida albicans (taxid: | 0.046 | 0.078 | 0.440 | 2.4e-07 | |
| UNIPROTKB|Q5ABG1 | 1040 | SET1 "Histone-lysine N-methylt | 0.046 | 0.078 | 0.440 | 2.4e-07 | |
| UNIPROTKB|D4A5H6 | 2294 | Setd2 "Protein Setd2" [Rattus | 0.064 | 0.050 | 0.343 | 2.9e-07 |
| TAIR|locus:2129755 SDG2 "SET domain protein 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3545 (1253.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 656/874 (75%), Positives = 757/874 (86%)
Query: 906 REEMMKSWKDESPAGLYSATSKYKKKLSKMVSERKYMNRSNGTSLANGDFDYGEYASDRE 965
++E+MKSW+D S GL SAT KY KKLSK V+E+KYM+R++ T NG DYGEYASDRE
Sbjct: 1467 KDELMKSWQDGS--GLSSAT-KYNKKLSKTVAEKKYMSRTSDTFGVNGASDYGEYASDRE 1523
Query: 966 IRKRLSKLNRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRSDGRARESRGAG 1025
I++RLSKLNRK RS+GR+++ R
Sbjct: 1524 IKRRLSKLNRKSFSSESDTSSELSDNGKSDNYSSASASESESD---IRSEGRSQDLRIEK 1580
Query: 1026 DFTTDEGLD-FSDDREWGARMTKASLVPPVTRKYEVIDQYVIVADEEDVRRKMRVSLPED 1084
FT D+ D +++REWGARMTKASLVPPVTRKYEVI++Y IVADEE+V+RKMRVSLPED
Sbjct: 1581 YFTADDSFDSVTEEREWGARMTKASLVPPVTRKYEVIEKYAIVADEEEVQRKMRVSLPED 1640
Query: 1085 YAEKLNAQKNGSEELDMELPEVKDYKPRKQLGDQVFEQEVYGIDPYTHNLLLDSMPDELD 1144
Y EKLNAQ+NG EELDMELPEVK+YKPRK LGD+V EQEVYGIDPYTHNLLLDSMP ELD
Sbjct: 1641 YGEKLNAQRNGIEELDMELPEVKEYKPRKLLGDEVLEQEVYGIDPYTHNLLLDSMPGELD 1700
Query: 1145 WNLLEKHLFIEDVLLRTLNKQVRHFTGTGNTPMMYPLQPVIEEIEKEAVDDCDVRTMKMC 1204
W+L +KH FIEDV+LRTLN+QVR FTG+G+TPM++PL+PVIEE+++ A ++CD+RTMKMC
Sbjct: 1701 WSLQDKHSFIEDVVLRTLNRQVRLFTGSGSTPMVFPLRPVIEELKESAREECDIRTMKMC 1760
Query: 1205 RGILKAMDSRPDDKYVAYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRS 1264
+G+LK ++SR DDKYV+YRKGLGVVCNKEGGFGE+DFVVEFLGEVYPVWKWFEKQDGIRS
Sbjct: 1761 QGVLKEIESRSDDKYVSYRKGLGVVCNKEGGFGEEDFVVEFLGEVYPVWKWFEKQDGIRS 1820
Query: 1265 LQKNNEDPAPEFYNIYLERPKGDADGYDLVVVDAMHKANYASRICHSCRPNCEAKVTAVD 1324
LQ+N DPAPEFYNIYLERPKGDADGYDLVVVDAMH ANYASRICHSCRPNCEAKVTAVD
Sbjct: 1821 LQENKTDPAPEFYNIYLERPKGDADGYDLVVVDAMHMANYASRICHSCRPNCEAKVTAVD 1880
Query: 1325 GHYQIGIYTVRGIHYGEEITFDYNSVTESKEEYEASVCLCGSQVCRGSYLNLTGEGAFEK 1384
GHYQIGIY+VR I YGEEITFDYNSVTESKEEYEASVCLCGSQVCRGSYLNLTGEGAF+K
Sbjct: 1881 GHYQIGIYSVRAIEYGEEITFDYNSVTESKEEYEASVCLCGSQVCRGSYLNLTGEGAFQK 1940
Query: 1385 VLKELHGLLDRHQLMLEACELNSVSEEDYLELGRAGLGSCLLGGLPNWVVAYSARLVRFI 1444
VLK+ HGLL+RH+LMLEAC LNSVSEEDYLELGRAGLGSCLLGGLP+W++AYSARLVRFI
Sbjct: 1941 VLKDWHGLLERHRLMLEACVLNSVSEEDYLELGRAGLGSCLLGGLPDWMIAYSARLVRFI 2000
Query: 1445 NLERTKLPEEILRHNLEEKRKYFSDICLEVEKSDAEVQAEGVYNQRLQNLAVTLDKVRYV 1504
N ERTKLPEEIL+HNLEEKRKYFSDI L+VEKSDAEVQAEGVYNQRLQNLAVTLDKVRYV
Sbjct: 2001 NFERTKLPEEILKHNLEEKRKYFSDIHLDVEKSDAEVQAEGVYNQRLQNLAVTLDKVRYV 2060
Query: 1505 MRCVFGDPKKAPPPVERLSPEETVSFLWKGEGSLVEELIQCMAPHVEEDVLNDLKSKIQA 1564
MR VFGDPK APPP+ERL+PEETVSF+W G+GSLV+EL+Q ++PH+EE LN+L+SKI
Sbjct: 2061 MRHVFGDPKNAPPPLERLTPEETVSFVWNGDGSLVDELLQSLSPHLEEGPLNELRSKIHG 2120
Query: 1565 HDPSGSEDIQRELRKSLLWLRDEVRNLPCTYKCRHDAAADLIHIYAYTKCFFRVQEYKAF 1624
HDPSGS D+ +EL++SLLWLRDE+R+LPCTYKCR+DAAADLIHIYAYTKCFF+V+EY++F
Sbjct: 2121 HDPSGSADVLKELQRSLLWLRDEIRDLPCTYKCRNDAAADLIHIYAYTKCFFKVREYQSF 2180
Query: 1625 TSPPVYISPLDLGPKYADKLGADLQVYRKTYGENYCLGQLIFWHIQTNADPDCTLARASR 1684
S PV+ISPLDLG KYADKLG ++ YRKTYGENYCLGQLI+W+ QTN DPD TL +A+R
Sbjct: 2181 ISSPVHISPLDLGAKYADKLGESIKEYRKTYGENYCLGQLIYWYNQTNTDPDLTLVKATR 2240
Query: 1685 GCLSLPDIGSFYAKVQKPSRHRVYGPKTVRFMLSRMEKQPQRPWPKDRIWAFKSSPRIFG 1744
GCLSLPD+ SFYAK QKPS+HRVYGPKTV+ M+S+M KQPQRPWPKD+IW FKS+PR+FG
Sbjct: 2241 GCLSLPDVASFYAKAQKPSKHRVYGPKTVKTMVSQMSKQPQRPWPKDKIWTFKSTPRVFG 2300
Query: 1745 SPMLDSSLTGCP-LDREMVHWLKHRPAIFQAMWD 1777
SPM D+ L LDRE++ WL++R +FQA WD
Sbjct: 2301 SPMFDAVLNNSSSLDRELLQWLRNRRHVFQATWD 2334
|
|
| POMBASE|SPCC306.04c set1 "histone lysine methyltransferase Set1" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2051769 ASHH3 "histone-lysine N-methyltransferase ASHH3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2RMP9 SETD2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|I3L895 MLL "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2080462 ASHH4 "histone-lysine N-methyltransferase ASHH4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0268132 DDB_G0268132 "SET domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| CGD|CAL0005024 SET1 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5ABG1 SET1 "Histone-lysine N-methyltransferase, H3 lysine-4 specific" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|D4A5H6 Setd2 "Protein Setd2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O23372 | ATXR3_ARATH | 2, ., 1, ., 1, ., 4, 3 | 0.6372 | 0.9471 | 0.7211 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1.43 | 0.737 |
| 3rd Layer | 2.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
 |
 |
 |
 |
 |
 |
 |
 |
 | SDG903 | SET domain protein (2477 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1778 | |||
| smart00317 | 124 | smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest | 4e-23 | |
| pfam00856 | 113 | pfam00856, SET, SET domain | 1e-18 | |
| COG2940 | 480 | COG2940, COG2940, Proteins containing SET domain [ | 1e-07 |
| >gnl|CDD|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 4e-23
Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 17/132 (12%)
Query: 1219 YVAYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYN 1278
+ + KG GV ++ GE F+ E++GE+ + E+ P+ Y+
Sbjct: 6 FKSPGKGWGVRATEDIPKGE--FIGEYVGEIITSEEAEER---------------PKAYD 48
Query: 1279 IYLERPKGDADGYDLVVVDAMHKANYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIH 1338
+ D + +DA K N A I HSC PNCE V+G +I I+ +R I
Sbjct: 49 TDGAKAFYLFDIDSDLCIDARRKGNLARFINHSCEPNCELLFVEVNGDDRIVIFALRDIK 108
Query: 1339 YGEEITFDYNSV 1350
GEE+T DY S
Sbjct: 109 PGEELTIDYGSD 120
|
Putative methyl transferase, based on outlier plant homologues. Length = 124 |
| >gnl|CDD|216155 pfam00856, SET, SET domain | Back alignment and domain information |
|---|
| >gnl|CDD|225491 COG2940, COG2940, Proteins containing SET domain [General function prediction only] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1778 | |||
| KOG1080 | 1005 | consensus Histone H3 (Lys4) methyltransferase comp | 100.0 | |
| KOG4442 | 729 | consensus Clathrin coat binding protein/Huntingtin | 100.0 | |
| KOG1082 | 364 | consensus Histone H3 (Lys9) methyltransferase SUV3 | 99.96 | |
| KOG1079 | 739 | consensus Transcriptional repressor EZH1 [Transcri | 99.83 | |
| smart00317 | 116 | SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) | 99.83 | |
| KOG1083 | 1306 | consensus Putative transcription factor ASH1/LIN-5 | 99.83 | |
| KOG1141 | 1262 | consensus Predicted histone methyl transferase [Ch | 99.79 | |
| KOG1085 | 392 | consensus Predicted methyltransferase (contains a | 99.59 | |
| COG2940 | 480 | Proteins containing SET domain [General function p | 99.49 | |
| PF00856 | 162 | SET: SET domain; InterPro: IPR001214 The SET domai | 99.35 | |
| KOG1081 | 463 | consensus Transcription factor NSD1 and related SE | 98.82 | |
| KOG2589 | 453 | consensus Histone tail methylase [Chromatin struct | 98.67 | |
| PF14237 | 45 | DUF4339: Domain of unknown function (DUF4339) | 97.58 | |
| KOG1141 | 1262 | consensus Predicted histone methyl transferase [Ch | 97.26 | |
| KOG2461 | 396 | consensus Transcription factor BLIMP-1/PRDI-BF1, c | 96.8 | |
| PF12937 | 47 | F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B | 96.32 | |
| PF02213 | 57 | GYF: GYF domain; InterPro: IPR003169 The glycine-t | 95.98 | |
| cd00072 | 57 | GYF GYF domain: contains conserved Gly-Tyr-Phe res | 95.78 | |
| cd00072 | 57 | GYF GYF domain: contains conserved Gly-Tyr-Phe res | 92.59 | |
| smart00508 | 26 | PostSET Cysteine-rich motif following a subset of | 92.57 | |
| smart00256 | 41 | FBOX A Receptor for Ubiquitination Targets. | 91.71 | |
| PF14237 | 45 | DUF4339: Domain of unknown function (DUF4339) | 91.53 | |
| PF02213 | 57 | GYF: GYF domain; InterPro: IPR003169 The glycine-t | 90.05 | |
| smart00444 | 56 | GYF Contains conserved Gly-Tyr-Phe residues. Proli | 89.93 | |
| PF00646 | 48 | F-box: F-box domain; InterPro: IPR001810 The F-box | 89.19 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 88.92 | |
| cd05512 | 98 | Bromo_brd1_like Bromodomain; brd1_like subfamily. | 88.14 | |
| PF00439 | 84 | Bromodomain: Bromodomain; InterPro: IPR001487 Brom | 87.72 | |
| KOG2997 | 366 | consensus F-box protein FBX9 [General function pre | 87.4 | |
| cd05529 | 128 | Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like | 87.14 | |
| PF05033 | 103 | Pre-SET: Pre-SET motif; InterPro: IPR007728 This r | 87.14 | |
| smart00468 | 98 | PreSET N-terminal to some SET domains. A Cys-rich | 86.15 | |
| cd05513 | 98 | Bromo_brd7_like Bromodomain, brd7_like subgroup. T | 85.1 | |
| cd05507 | 104 | Bromo_brd8_like Bromodomain, brd8_like subgroup. I | 82.72 | |
| smart00297 | 107 | BROMO bromo domain. | 82.69 | |
| KOG2084 | 482 | consensus Predicted histone tail methylase contain | 80.45 |
| >KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-70 Score=679.82 Aligned_cols=911 Identities=27% Similarity=0.285 Sum_probs=691.0
Q ss_pred ccCCCc-ccccccccccchhHHHHhhhccccccCCCchhhccccccCC------------ccCccc-----ccCCCCccc
Q 000255 125 CCPDGS-AAAAESSEDLHIDVRVGALLDGFTVIPGKEIETLGELKSGD------------KDHWVV-----CFDSDEWFS 186 (1778)
Q Consensus 125 ~~~~~~-~~~~e~~e~~~id~rv~~l~~~~~~~~g~e~e~~~~~~~~~------------~~~~~~-----~~~~~~w~~ 186 (1778)
+|..-. .++....+++.++.|+..+..+....++.|.++.++..... .+++-. +.-...--+
T Consensus 71 v~~~t~~~~s~~~~~~~~s~~~~~~~~~~~~~~~~ke~~~~~~~~~~~~~~~k~~~s~~~~~~~~~~~s~~~~~~~~~~s 150 (1005)
T KOG1080|consen 71 VCSDTSKKSSRGRVRAVPSRFRDSNVGTWRSSTPSKEFETEGEILKVNSEFEEVKVSSGSSKLHPSKDSKVFPRKDNPDS 150 (1005)
T ss_pred eeecCCCccccCCcccccccccccccccCCcccccccccCcceeeecccccCCceeccCccccCcccccccCCcCCCCcc
Confidence 344444 78888999999999999999999999999999888877210 011110 000001111
Q ss_pred ccccccCCCcccCChhhhccccccceeecCCCccccCCCCCCCCCCCCCCCCccccCCCCCCCCCCcccccCCccCCCCC
Q 000255 187 GRWSCKGGDWKRNDEAAQDRCSRKKQVLNDGFPLCQMPKSGYEDPRWNQKDDLYYPSHSRRLDLPPWAYACPDERNDGSG 266 (1778)
Q Consensus 187 ~~w~~kggdw~~~~~~~qd~~~~~k~vln~g~~lc~~~~~~~edpr~~~~d~~y~~~~~~~~~lp~wa~~~~~e~~~~~~ 266 (1778)
--|+| ++-++.+|+|+. .+|+|+|+|+|.+++..++.+.|+.+.+++++..+.+...+.||+...++++
T Consensus 151 s~~~~-----~~~~~~s~~~~~--~i~~~~~~p~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~d~~~~---- 219 (1005)
T KOG1080|consen 151 SEVSC-----IDYWEASQDRYD--EIVANDGMPLKSDASSKGVYKPEEFTVGDLVWAKSGRNEPPWPAIVIDPIRQ---- 219 (1005)
T ss_pred cccch-----hhhhhcccCccc--ceeeccCCcCcccccccccccCcccccchhhhcccccCCcccccceeehhhc----
Confidence 12888 888889999998 9999999999999999999999999999999999999999999998755542
Q ss_pred CCCcccccccccccccceeeeeEeeeeeeecCCCCccccCccccccCcCCCCCccCccccccccccCccccccccccccC
Q 000255 267 GSRSTQSKLAAVRGVKGTMLPVVRINACVVNDHGSFVSEPRSKVRAKERHSSRSARSYSSANDVRRSSAESDSHSKARNN 346 (1778)
Q Consensus 267 ~~~~~~~~~~~~~~~~g~~~~~~r~~~~~~~~~~~~~~~~~~k~~~~~r~~~~~~r~~~~~~~~~r~s~~~~~~~~~~~~ 346 (1778)
.+|||+-+-+|+|.-+..|.+.+...-.....+.++..|++++..+.+.-..+.++......+++-+..-
T Consensus 220 ----------~~~~v~as~~~~~~~~~~~~~s~~~~~~~~~~~r~~m~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 289 (1005)
T KOG1080|consen 220 ----------APRGVLASCLPVAACVMFFGNSGVPTERDYAWVRRGMERPFSRPVRPFQDQTELKREKARSFEQALEEAG 289 (1005)
T ss_pred ----------chhhhhccCcchhhhheeeeccCCccccchhhhhhccccccchhhhhccccccccccCccchhHHHHHhh
Confidence 6689999988888888888888877777888999999999999999999999988888888888888888
Q ss_pred CCCCCcccccccccCCCCcccccccccccccceEEecCCCCccCCCCHHHHHHHhhhcccccccccccccCceeeecccc
Q 000255 347 QDSQGSWKSIACINTPKDRLCTVDDLQLQLGEWYYLDGAGHERGPSSFSELQVLVDQGCIQKHTSVFRKFDKVWVPLTFA 426 (1778)
Q Consensus 347 ~~~~~~~~~~~~~~~p~d~~c~~~~l~l~~g~w~yldg~g~e~gp~s~selq~~v~~g~i~~~ssvfrk~d~~w~p~~~~ 426 (1778)
+..|++|+-. +++++++.|+|.+-|+++.+.||+++++++.++..|.+..+++||++.|+.|+|++.+
T Consensus 290 ~~e~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~s~~~v~~~~~~~~~~~~~~ 357 (1005)
T KOG1080|consen 290 LAEQGNWKKD------------VDDAHLITGDSSATDSALSEGGPSSFSELQKLHEKGFIKSHSSVFRKSDKIHVPSTSI 357 (1005)
T ss_pred cccccccccc------------ccchhhhcCCCccchhhhhccccccccccccccccCCccccccccCCCcccccccccc
Confidence 8999999977 8999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCcccCCCCCCCCCCCCCccccccccccccCCCcccccccceeeecchhhHHHHHHHhcchHHHHHHHh
Q 000255 427 TETSASTVRNHGEKIMPSGDSSGLPPTQSQDAVLGESNNNVNSNAFHTMHPQFIGYTRGKLHELVMKSYKNREFAAAINE 506 (1778)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~f~~~~pqf~g~t~gklhe~vmk~~k~r~~~~~~n~ 506 (1778)
.....-..+.......+.+. .++.....+.-.... ...+-..++.-|+++.+| +++.
T Consensus 358 ~~~~~p~~~~~~~~~~~~~~-~~l~~k~~~~~~~s~--~~~g~~~~~~~~~~~~d~--------------------~~~~ 414 (1005)
T KOG1080|consen 358 TKSPPPIAKSAKKTKALPPA-QGLLCKECSDETKSN--QTCGICKRIWHSSDSGDW--------------------VRCD 414 (1005)
T ss_pred ccCCCCchhhccccCccccc-chhhhhhhhchhhcc--ccccccceecccccccce--------------------eeec
Confidence 88865555544444444443 332222222222222 235566799999999999 7899
Q ss_pred hhccccccCCCchhhhhh-hhcCCCCcccccceeeccccCCCCcchhhhhh-cc-CCCcchhhccCCCcccCCCcccccc
Q 000255 507 VLDPWINAKQPKKETEHV-YRKSEGDTRAGKRARLLVRESDGDEETEEELQ-TI-QDESTFEDLCGDASFPGEESASSAI 583 (1778)
Q Consensus 507 ~ld~wi~~~~p~~e~e~~-~~~s~~d~~~~kr~r~~~~~s~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~~~~~~ 583 (1778)
+-|+||.+.+++.+-+.. +..+.. +-+..+. .-.+.-...+ -+ +..++|++++++.+
T Consensus 415 ~c~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~---~~~~~~~~~~~~~~~~~l~~d~~s~~~~----------- 474 (1005)
T KOG1080|consen 415 GCDVWIHARCDKISSEKFKYSSSGM------HNYQTLN---FPQEYTALNLSYCPKCKLTFDDLSTDLS----------- 474 (1005)
T ss_pred ccccceeeccCcccccccccccccc------ccccccc---chhhhhhhhccccchhheecccccccCC-----------
Confidence 999999999988766522 111100 0000000 0011111111 22 66777777777655
Q ss_pred ccCccccCcchHHHHHHHHhhhchhHHHHhhhcchhHHHHHHHhcccceeeecCCCCCCchhHHHHHHHhhcccccccee
Q 000255 584 ESGGWGLLDGHTLAHVFHFLRSDMKSLAFASLTCRHWRAAVRFYKGISRQVDLSSVGPNCTDSLIRKTLNAFDKEKLNSI 663 (1778)
Q Consensus 584 ~~~~w~~l~g~~l~rvfh~lr~d~ksl~~~~~tc~~w~~~~~~~~~~~~~vdls~~g~~ctd~~~~~~~~~y~~~~~~~~ 663 (1778)
+++|++|||.++.++|...+.+++||||.++.+-++..++..|....++.|+++....+|++|...+..++
T Consensus 475 ---------~~~~~~~~~~~~~~~~~k~~~~e~~k~~~~~~~~~k~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~s~ 545 (1005)
T KOG1080|consen 475 ---------PAALARVFHMLRYSVKKKKFLSEWERHTGATAKIWKDSSRVKDELLPLPKWVESRGRSIMNTYNSEKPKSI 545 (1005)
T ss_pred ---------cchheeeecccCcchhhhhcccchhhhhcccccccccccccccccccchhhhhhccccccccccccCCcch
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccccCChhHHHHHHHhCCCccEEeeccccccccccccCCcccccccccccCcccCcccccccchhhhcccCCCCcCc
Q 000255 664 LLVGCTNITSGMLEEILQSFPHLSSIDIRGCGQFGELALKFPNINWVKSQKSRGAKFNDSRSKIRSLKQITEKSSSAPKS 743 (1778)
Q Consensus 664 ~l~~c~n~~~~~l~~~l~~~p~~~~~~i~gc~q~~~l~~~~~~v~w~~~~~~~~~~~~~~~~k~~sl~~~~~~~~~~~~~ 743 (1778)
++.+|+++...++.......|.+.-.++.+|.++.++.+...||.|+.++-.+..
T Consensus 546 ~~~~~~s~~~~~~~~~~~~~~~l~~~~t~~c~~~~~~~~~~~n~~~~~~~~~~~~------------------------- 600 (1005)
T KOG1080|consen 546 VLMGKTSVQRMLLELIEKREPRLSKWTTERCAVCRDDEDWEKNVSIICDRCTRSV------------------------- 600 (1005)
T ss_pred hhhccchhhhhcCcccccchhhhcCCCcccccccccccccccceeeeeccccccC-------------------------
Confidence 9999999999999999999999999999999999999999999999988744111
Q ss_pred CCCCCCCCCcccchhhhhccccccchhhhhhhhhhccchhhhccccccccchhHHHHHhhhhhcchhhHHHHHHHHHHHH
Q 000255 744 KGLGDDMDDFGDLKDYFESVDKRDSANQSFRRSLYQRSKVFDARKSSSILSRDARMRRWSIKKSENGYKRMEEFLASSLK 823 (1778)
Q Consensus 744 ~~~~~~~~~~~~l~~~f~~v~~r~~~~~~~~~~~y~rs~~~da~~ss~~~~~~~~~~~~~~~~~e~~y~~~~~~~~~~l~ 823 (1778)
..+.+|+++.|+..++.+++++++ .|+|.+.+...++.++.++| +.|.|.+..+. .+||+++++-.|
T Consensus 601 -----~s~~~g~~~~~~~~~~~~~~~~~~----~~~r~~~l~~~~g~al~p~d-~gr~~~~e~a~---~~~e~~~~~~~~ 667 (1005)
T KOG1080|consen 601 -----HSECYGNLKSYDGTSWVCDSCETL----DIKRSCCLCPVKGGALKPTD-EGRWVHVECAW---FRPEVCLASPER 667 (1005)
T ss_pred -----CCcccccCCCCCCCcchhhccccc----cCCchhhhccccCcccCCCC-ccchhhhhchh---ccccccCCCccC
Confidence 147889999999999999998887 99999999999999999999 99999999999 999999999999
Q ss_pred HHHhhcccceeccchhHHHhhhccccccccCCcchhhhHHH--HHHHHHHhccCCCCCcchhHHHHHHHHHHHhhhcccc
Q 000255 824 EIMRVNTFEFFVPKVAEIEGRMKKGYYISHGLGSVKDDISR--MCRDAIKAKNRGSAGDMNRITTLFIQLATRLEQGAKS 901 (1778)
Q Consensus 824 ~im~~~~~d~f~~k~~~ie~~~k~gyy~~~g~~~~k~di~~--~~r~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 901 (1778)
-.|..+.+.|+--++.+|=.- ||+..--..+.. .|+.|++ ..+ ++.+.+|+.-
T Consensus 668 ~~p~~~~~~~p~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~a~~--------------~~~-~~~~~~l~~~-- 722 (1005)
T KOG1080|consen 668 MEPAVGTFKIPALSFLKICFI--------HGSCRQCCKCETGSHAMCASR--------------AGY-IMEAVSLEEV-- 722 (1005)
T ss_pred CCCcccccccCccchhhhccc--------cccccccchhhhcceehhhcC--------------ccC-hhhhhhhhhh--
Confidence 999999999988776664221 444332222111 2334433 233 4444444442
Q ss_pred chhhHHHHhhhccCCCCCcccccchhhhhhhhhhhhhhhhcccCCCCcccCCCCCcccccchHHHHHHhhhhcccccCCC
Q 000255 902 SYYEREEMMKSWKDESPAGLYSATSKYKKKLSKMVSERKYMNRSNGTSLANGDFDYGEYASDREIRKRLSKLNRKSLDSG 981 (1778)
Q Consensus 902 ~~~~r~~~~~~~~~~~~~~~~~~~~k~k~k~~k~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ei~r~lskl~~~~~~s~ 981 (1778)
++.+-...+. +.+... .-++.-+..+|-.+.+...++..++..+++-+++++++.++||++|+..+|+.++.|+
T Consensus 723 -~~~~~~~~~~--~~~~~d---~~l~~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 796 (1005)
T KOG1080|consen 723 -SQQTTSYVKE--DGPGPD---SVLKVNTPSGKFGAENLSQNKKSRTDGVRLVLTYKEYAPLREIKSRAEPLNRIDFSSE 796 (1005)
T ss_pred -hhhhhhhhhh--ccCCcc---cceeecCccccccccchhhhhhccccccccccccccccccccchhcccCCcccCcccc
Confidence 1111111110 111100 1112222222222334444444455556999999999999999999999999998887
Q ss_pred CCCCcCCCCCCCCCCCCCccccccCccccccccCccccccCCCCCccCCCCCCccCccccccccccccCCCcccceeeeE
Q 000255 982 SETSDDLDGSSEDGKSDSESTVSDTDSDMDFRSDGRARESRGAGDFTTDEGLDFSDDREWGARMTKASLVPPVTRKYEVI 1061 (1778)
Q Consensus 982 setsd~~d~~~e~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ga~mtk~~l~p~~trky~vI 1061 (1778)
.-.. .+ ..++++...+.++|+.+..+.+..+......+++ +.||. |+..++. .
T Consensus 797 ~~~~------~~-~r~~~~~~~~~~~s~~~~~s~~~s~~~s~~~rl~-------------q~rl~-a~~~~~~----~-- 849 (1005)
T KOG1080|consen 797 ARCR------SE-SRSDNSKSPLAEESESDITSGGSSHDLSAEERLN-------------QFRLS-ASFTASF----I-- 849 (1005)
T ss_pred cccc------ch-hhcccccccccccccccccccccccchhHHhhhH-------------HHHhh-hhccccc----c--
Confidence 4332 22 2788888888888888888877766655543333 12222 1111111 1
Q ss_pred EeeeeccChHHHHHhcccccchhHHHhhhhccCCCccccCCccccccccccccCCCCcccccccccccccccccccCCCc
Q 000255 1062 DQYVIVADEEDVRRKMRVSLPEDYAEKLNAQKNGSEELDMELPEVKDYKPRKQLGDQVFEQEVYGIDPYTHNLLLDSMPD 1141 (1778)
Q Consensus 1062 ~~y~iv~D~~ev~~km~v~l~~dy~ekl~~~k~gt~~~d~e~P~~~~Y~prkvlG~DV~Eqe~yGcDCyTrn~L~d~~P~ 1141 (1778)
.|+.|+++.|++...++| +
T Consensus 850 ------~~~~~~~~~~~~~~rkk~-----------------------------------------------------~-- 868 (1005)
T KOG1080|consen 850 ------LDEAEVLRYNQLKFRKKY-----------------------------------------------------V-- 868 (1005)
T ss_pred ------cchHHHHHHHHHhhhhhh-----------------------------------------------------h--
Confidence 788888888876666332 0
Q ss_pred ccchhhhhhhhhhHHHHHHHHhhhccccCCCCCCCCCCCCCcccccCCCccccCCCchhhhcccccccccccCCCccccc
Q 000255 1142 ELDWNLLEKHLFIEDVLLRTLNKQVRHFTGTGNTPMMYPLQPVIEEIEKEAVDDCDVRTMKMCRGILKAMDSRPDDKYVA 1221 (1778)
Q Consensus 1142 el~W~~~~K~kFIek~LLktLNkqvr~~~G~g~tP~~c~ckpv~EC~e~cC~edC~NRvvQ~Cq~ilk~I~k~pleVFrT 1221 (1778)
.| -++
T Consensus 869 ----------~F-----------------------------------------------------------------~~s 873 (1005)
T KOG1080|consen 869 ----------KF-----------------------------------------------------------------GRS 873 (1005)
T ss_pred ----------cc-----------------------------------------------------------------ccc
Confidence 00 012
Q ss_pred cCcccEEEeCccCCcCCCCEEEEEecEEecccchhhhhhhhHhhhccCCCCCCcceeeeccCCCCCCCCCceEEEcCccC
Q 000255 1222 YRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVVDAMHK 1301 (1778)
Q Consensus 1222 ~~KGwGVFAtrdE~I~KGEFI~EYvGEVIt~eEw~ErqdaiRrlq~~~kd~~~dFY~i~L~r~kgD~dG~d~l~IDAtrk 1301 (1778)
..+||||||.. +|.+|++|+||+||+|.+.-...++ ..|...+...-|.+-++. .++|||+++
T Consensus 874 ~iH~wglfa~~--~i~~~dmViEY~Ge~vR~~iad~RE------~~Y~~~gi~~sYlfrid~---------~~ViDAtk~ 936 (1005)
T KOG1080|consen 874 GIHGWGLFAME--NIAAGDMVIEYRGELVRSSIADLRE------ARYERMGIGDSYLFRIDD---------EVVVDATKK 936 (1005)
T ss_pred cccccceeecc--CccccceEEEeeceehhhhHHHHHH------HHHhccCcccceeeeccc---------ceEEecccc
Confidence 35799999995 6999999999999999763211111 122233444555443332 389999999
Q ss_pred CCcccccCCCCCCCeEEEEEEECCEEEEEEEEeccCCCCCeEEEecCCCCcccccccCceEEcCCCCcccee
Q 000255 1302 ANYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSVTESKEEYEASVCLCGSQVCRGSY 1373 (1778)
Q Consensus 1302 GNiARFINHSCdPNCeaq~v~VdGepRIgfFAlRDIkaGEELTfDYg~~~es~kE~e~~~ClCGS~NCRG~i 1373 (1778)
||+||||||||+|||++.++.|+|+.+|+|||.|+|.+||||||||.|..+.. +.+|+|||+||||++
T Consensus 937 gniAr~InHsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYkF~~e~~----kipClCgap~Crg~~ 1004 (1005)
T KOG1080|consen 937 GNIARFINHSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYKFPTEDD----KIPCLCGAPNCRGFL 1004 (1005)
T ss_pred CchhheeecccCCCceeeEEEecCeeEEEEEEecccccCceeeeecccccccc----ccccccCCCcccccc
Confidence 99999999999999999999999999999999999999999999999998754 589999999999953
|
|
| >KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >KOG1079 consensus Transcriptional repressor EZH1 [Transcription] | Back alignment and domain information |
|---|
| >smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain | Back alignment and domain information |
|---|
| >KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription] | Back alignment and domain information |
|---|
| >KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only] | Back alignment and domain information |
|---|
| >COG2940 Proteins containing SET domain [General function prediction only] | Back alignment and domain information |
|---|
| >PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco | Back alignment and domain information |
|---|
| >KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription] | Back alignment and domain information |
|---|
| >KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PF14237 DUF4339: Domain of unknown function (DUF4339) | Back alignment and domain information |
|---|
| >KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription] | Back alignment and domain information |
|---|
| >PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B | Back alignment and domain information |
|---|
| >PF02213 GYF: GYF domain; InterPro: IPR003169 The glycine-tyrosine-phenylalanine (GYF) domain is an around 60-amino acid domain which contains a conserved GP[YF]xxxx[MV]xxWxxx[GN]YF motif | Back alignment and domain information |
|---|
| >cd00072 GYF GYF domain: contains conserved Gly-Tyr-Phe residues; Proline-binding domain in CD2-binding and other proteins | Back alignment and domain information |
|---|
| >cd00072 GYF GYF domain: contains conserved Gly-Tyr-Phe residues; Proline-binding domain in CD2-binding and other proteins | Back alignment and domain information |
|---|
| >smart00508 PostSET Cysteine-rich motif following a subset of SET domains | Back alignment and domain information |
|---|
| >smart00256 FBOX A Receptor for Ubiquitination Targets | Back alignment and domain information |
|---|
| >PF14237 DUF4339: Domain of unknown function (DUF4339) | Back alignment and domain information |
|---|
| >PF02213 GYF: GYF domain; InterPro: IPR003169 The glycine-tyrosine-phenylalanine (GYF) domain is an around 60-amino acid domain which contains a conserved GP[YF]xxxx[MV]xxWxxx[GN]YF motif | Back alignment and domain information |
|---|
| >smart00444 GYF Contains conserved Gly-Tyr-Phe residues | Back alignment and domain information |
|---|
| >PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] | Back alignment and domain information |
|---|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
| >cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily | Back alignment and domain information |
|---|
| >PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins [] | Back alignment and domain information |
|---|
| >KOG2997 consensus F-box protein FBX9 [General function prediction only] | Back alignment and domain information |
|---|
| >cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily | Back alignment and domain information |
|---|
| >PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain | Back alignment and domain information |
|---|
| >smart00468 PreSET N-terminal to some SET domains | Back alignment and domain information |
|---|
| >cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup | Back alignment and domain information |
|---|
| >cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup | Back alignment and domain information |
|---|
| >smart00297 BROMO bromo domain | Back alignment and domain information |
|---|
| >KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1778 | ||||
| 3ope_A | 222 | Structural Basis Of Auto-Inhibitory Mechanism Of Hi | 3e-11 | ||
| 2w5y_A | 192 | Binary Complex Of The Mixed Lineage Leukaemia (Mll1 | 2e-10 | ||
| 4fmu_A | 278 | Crystal Structure Of Methyltransferase Domain Of Hu | 2e-10 | ||
| 3ooi_A | 232 | Crystal Structure Of Human Histone-Lysine N-Methylt | 3e-09 | ||
| 2r3a_A | 300 | Methyltransferase Domain Of Human Suppressor Of Var | 5e-05 | ||
| 3f9z_A | 166 | Structural Insights Into Lysine Multiple Methylatio | 5e-05 | ||
| 3f9w_A | 166 | Structural Insights Into Lysine Multiple Methylatio | 5e-05 | ||
| 4ij8_A | 165 | Crystal Structure Of The Complex Of Setd8 With Sam | 6e-05 | ||
| 1zkk_A | 167 | Crystal Structure Of Hset8 In Ternary Complex With | 1e-04 | ||
| 2bqz_A | 161 | Crystal Structure Of A Ternary Complex Of The Human | 1e-04 |
| >pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone Methyltransferase Length = 222 | Back alignment and structure |
|
| >pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set Domain With The Cofactor Product S-Adenosylhomocysteine. Length = 192 | Back alignment and structure |
| >pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set Domain- Containing Protein 2 Compound: Pr-Snf Length = 278 | Back alignment and structure |
| >pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine N-Methyltransferase Nsd1 Set Domain In Complex With S-Adenosyl-L-Methionine Length = 232 | Back alignment and structure |
| >pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of Variegation 3-9 Homolog 2 Length = 300 | Back alignment and structure |
| >pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set Domain Methyltransferases, Set8-Y245f H4-Lys20 ADOHCY Length = 166 | Back alignment and structure |
| >pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set Domain Methyltransferases, Set8-Y334f H4-Lys20 ADOHCY Length = 166 | Back alignment and structure |
| >pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam Length = 165 | Back alignment and structure |
| >pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4 Peptide (16-24) And Adohcy Length = 167 | Back alignment and structure |
| >pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human Histone Methyltransferase Pr-Set7 (Also Known As Set8) Length = 161 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Length = 192 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 5e-25
Identities = 45/152 (29%), Positives = 67/152 (44%), Gaps = 21/152 (13%)
Query: 1224 KGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLER 1283
G G+ C + + V+E+ G V +K R +++ Y+ R
Sbjct: 62 HGRGLFCKRN--IDAGEMVIEYAGNVIR-SIQTDK----REKYYDSKG-----IGCYMFR 109
Query: 1284 PKGDADGYDLVVVDAMHKANYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEI 1343
VVDA N A I HSC PNC ++V +DG I I+ +R I+ GEE+
Sbjct: 110 IDDS------EVVDATMHGNAARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEEL 163
Query: 1344 TFDYNSVTESKEEYEASVCLCGSQVCRGSYLN 1375
T+DY E + C CG++ CR +LN
Sbjct: 164 TYDYKFPIE--DASNKLPCNCGAKKCRK-FLN 192
|
| >3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Length = 232 | Back alignment and structure |
|---|
| >3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Length = 222 | Back alignment and structure |
|---|
| >3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 2bqz_A* Length = 166 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Length = 302 | Back alignment and structure |
|---|
| >3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Length = 290 | Back alignment and structure |
|---|
| >1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Length = 299 | Back alignment and structure |
|---|
| >3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Length = 287 | Back alignment and structure |
|---|
| >2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Length = 300 | Back alignment and structure |
|---|
| >3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Length = 273 | Back alignment and structure |
|---|
| >1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Length = 119 | Back alignment and structure |
|---|
| >3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Length = 247 | Back alignment and structure |
|---|
| >2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Length = 261 | Back alignment and structure |
|---|
| >2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Length = 149 | Back alignment and structure |
|---|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429 | Back alignment and structure |
|---|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 | Back alignment and structure |
|---|
| >3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Length = 151 | Back alignment and structure |
|---|
| >3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Length = 152 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1778 | ||||
| d1ml9a_ | 284 | b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [T | 2e-16 | |
| d2f69a2 | 171 | b.85.7.1 (A:194-364) Histone H3 K4-specific methyl | 2e-11 | |
| d1mvha_ | 269 | b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (S | 2e-10 | |
| d2g46a1 | 119 | b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Meth | 1e-07 |
| >d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Length = 284 | Back information, alignment and structure |
|---|
class: All beta proteins fold: beta-clip superfamily: SET domain family: Histone lysine methyltransferases domain: Dim-5 species: Fungus (Neurospora crassa) [TaxId: 5141]
Score = 79.2 bits (194), Expect = 2e-16
Identities = 27/153 (17%), Positives = 51/153 (33%), Gaps = 8/153 (5%)
Query: 1223 RKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLE 1282
+G GV C FV +LGE+ + +++ ++ + +
Sbjct: 134 DRGWGVKCPVN--IKRGQFVDRYLGEIIT-SEEADRRRAESTIARRKDVYLFALDKFSDP 190
Query: 1283 RPKGDADGYDLVVVDAMHKANYASRICHSCRPNCEAKVTAVDGH----YQIGIYTVRGIH 1338
+ VD + + I HSC PN D + + ++ ++ I
Sbjct: 191 DSLDPLLAGQPLEVDGEYMSGPTRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIP 250
Query: 1339 YGEEITFDYNSVTESKE-EYEASVCLCGSQVCR 1370
G E+TFDY + E + + C
Sbjct: 251 KGTELTFDYVNGLTGLESDAHDPSKISEMTKCL 283
|
| >d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
| >d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 269 | Back information, alignment and structure |
|---|
| >d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Length = 119 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1778 | |||
| d1ml9a_ | 284 | Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} | 100.0 | |
| d1mvha_ | 269 | SET domain of Clr4 {Fission yeast (Schizosaccharom | 100.0 | |
| d2f69a2 | 171 | Histone H3 K4-specific methyltransferase SET7/9 ca | 99.87 | |
| d2g46a1 | 119 | Viral histone H3 Lysine 27 Methyltransferase {Para | 99.72 | |
| d2h2ja2 | 261 | RuBisCo LSMT catalytic domain {Garden pea (Pisum s | 97.82 | |
| d1fs1a1 | 41 | Skp2 {Human (Homo sapiens) [TaxId: 9606]} | 93.65 | |
| d1nexb1 | 100 | Cdc4 F-box and linker domains {Baker's yeast (Sacc | 91.43 | |
| d2ovrb1 | 102 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 89.92 | |
| d1wh2a_ | 78 | Hypothetical rotein At5g08430 {Thale cress (Arabid | 89.76 | |
| d1p22a1 | 118 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 88.02 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 82.6 |
| >d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: beta-clip superfamily: SET domain family: Histone lysine methyltransferases domain: Dim-5 species: Fungus (Neurospora crassa) [TaxId: 5141]
Probab=100.00 E-value=2.5e-37 Score=285.01 Aligned_cols=244 Identities=20% Similarity=0.280 Sum_probs=159.8
Q ss_pred CCCCC-CCCCCCCCCCCCCCCCCC--CCC-CCCCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 55688-563123455666788742--111-245462145-5334578864202233221346999999873101456889
Q 000255 1098 ELDME-LPEVKDYKPRKQLGDQVF--EQE-VYGIDPYTH-NLLLDSMPDELDWNLLEKHLFIEDVLLRTLNKQVRHFTGT 1172 (1778)
Q Consensus 1098 ~~d~e-~P~~~~Y~prkvlG~DV~--Eqe-vyGiDCyTr-n~I~d~lP~el~W~~~~K~kFIek~LLktLNkqvr~~~Gs 1172 (1778)
++|.+ +|..|.|+++.+.+.+|. ... ..||+|... .+....|+|- ... ...+.......... ..+...
T Consensus 9 ~vd~~~~p~~f~Yi~~~~~~~~~~~~~~~~~~gC~C~~~~~c~~~~C~C~---~~~-~~~~~~~~~~~~~~---~~~~~~ 81 (284)
T d1ml9a_ 9 REDDAFLNPNFRFIDHSIIGKNVPVADQSFRVGCSCASDEECMYSTCQCL---DEM-APDSDEEADPYTRK---KRFAYY 81 (284)
T ss_dssp SSSSCCCCTTCEECSSCEECTTCCCCCGGGCCCCCCSSTTGGGSTTSGGG---TTS-CCC--------------CCSSBB
T ss_pred CCCCCCCCCCCEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH---HHC-CCCCCCCCCCCCCC---CCCCCC
T ss_conf 77777899998887237767998638745777888958997689889273---453-83323355654434---542011
Q ss_pred --CCCCC------CCCCCCCCCCCC-CCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEE
Q ss_conf --99988------889876222578-856468982343201121122335788641126744279917457869999899
Q 000255 1173 --GNTPM------MYPLQPVIEEIE-KEAVDDCDVRTMKMCRGILKAMDSRPDDKYVAYRKGLGVVCNKEGGFGEDDFVV 1243 (1778)
Q Consensus 1173 --g~tP~------~c~ckpiiECse-~cC~edCdNRvlQ~cq~ilk~Iek~pleVFrT~~KGwGVfAtedE~IkKGEFIi 1243 (1778)
+.... .....+++||+. |.|+..|.||++|.+... ++++|++..|||||||+++ |++|+||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~i~EC~~~C~C~~~C~Nr~~q~g~~~-------~lev~kt~~kG~Gv~a~~~--I~kGt~I~ 152 (284)
T d1ml9a_ 82 SQGAKKGLLRDRVLQSQEPIYECHQGCACSKDCPNRVVERGRTV-------PLQIFRTKDRGWGVKCPVN--IKRGQFVD 152 (284)
T ss_dssp CSSTTBTSBCHHHHHHCCCEECCCTTCSSCTTCTTCHHHHCCCS-------CEEEEECSSSCEEEECSSC--BCTTCEEE
T ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEECCCCCCC-------CEEEEECCCCCEEEEECCC--CCCCCEEE
T ss_conf 33444453433224688835677989896998898224389845-------7799985897238855877--18999999
Q ss_pred EEECEEECCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCC------CEEEECCCCCCCCCCCCCCCCCCCEE
Q ss_conf 993489445102223354675210689999864144314888999998------34999276678844445799999807
Q 000255 1244 EFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGY------DLVVVDAMHKANYASRICHSCRPNCE 1317 (1778)
Q Consensus 1244 EYvGEVIt~eEw~ErqeaiRklq~~~kd~~~dFY~i~Ler~kgdadG~------D~lvIDAtrkGNiARFINHSCePNCe 1317 (1778)
||+||+++..+..++. ..+......+.|.+.+..... .+.. ..++|||+.+||+||||||||+|||+
T Consensus 153 eY~Gevi~~~ea~~~~------~~~~~~~~~~~y~~~l~~~~~-~~~~~~~~~~~~~~iDa~~~GN~aRfiNHSC~PN~~ 225 (284)
T d1ml9a_ 153 RYLGEIITSEEADRRR------AESTIARRKDVYLFALDKFSD-PDSLDPLLAGQPLEVDGEYMSGPTRFINHSCDPNMA 225 (284)
T ss_dssp ECCCEEECHHHHHHHH------HHSCGGGCHHHHEEECCSSCC-SSSSCHHHHSCCCEEECSSEECGGGGCEECSSCSEE
T ss_pred EECCCCCCHHHHHHHH------HHHHHHCCCCCCCEECCCCCC-CCCCCCCCCCCCEEEEEEECCCHHHEEECCCCCCCC
T ss_conf 9347536899999999------888761468842020034566-431111236785467411215612314313567861
Q ss_pred EEEEEECC----EEEEEEEEECCCCCCCEEEEECCCCCCCCC--------CCCCCEEEC
Q ss_conf 99999889----889999982047899738983599985600--------136815872
Q 000255 1318 AKVTAVDG----HYQIGIYTVRGIHYGEEITFDYNSVTESKE--------EYEASVCLC 1364 (1778)
Q Consensus 1318 vq~v~VdG----epRIaIFAlRDIkaGEELTFDYg~~~eskk--------E~e~f~ClC 1364 (1778)
++.+.+++ .++|+|||+|||++||||||||+..+++.. ....+.|+|
T Consensus 226 ~~~v~~~~~~~~~~~i~~~A~rdI~~GEELt~dYg~~~~~~~~~~~~~~~~~~~~~C~C 284 (284)
T d1ml9a_ 226 IFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEMTKCLC 284 (284)
T ss_dssp EEEEESSGGGGGGCEEEEEESSCBCTTCEEEECTTC-----------------------
T ss_pred EEEEEECCCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCHHHCCHHHCCCCCCEEEC
T ss_conf 68999404789720799998971299998987618997773100010112568766259
|
| >d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
| >d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} | Back information, alignment and structure |
|---|
| >d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
| >d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wh2a_ d.76.1.1 (A:) Hypothetical rotein At5g08430 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|