Citrus Sinensis ID: 000264

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------1590------1600------1610------1620------1630------1640------1650------1660------1670------1680------1690------1700------1710------1720------1730------1740------1750------1760----

MEIDSPPDFSPPKPRDRIVRRLMNIGVPEEFLDYSGIVNFAKNDKSRIPELVSTILPPDEEVAEVIQDAKAKNKKVSVGPNMKGRFRESMLWLQWLMFEREPEKVLRKLSKIGQRGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYTGGGCCDCGDVTAWKREGFCSRHKGAEQIQPLPEKYANSAAPVLDALFIYWENKLSLAESVGQENPRASDHVAERRKLANELTFAVVEMLLEFCKNSESLLSFVSKRVISVIGLLDILVRAEMFSSDVVVRKLHELLLKLLGEPIFKYEFAKVFLSYYPVFVKDAIREHSDDTIKKYPLLSTFSVQIFTVPTLTPRLVKEMNLLEMLLGCLREIFDSCAGDDSCLQVAKWANLYETTNRVIGDIRFVMSHAAVSKYATHEQLNISKAWMKLLTFVQGMNPQKRETGIHIREENEYMHLPLVLDHSIANIQPLLVDGAFSSAVSEETRYDFSMYKQDIGDGDSLRHAKVGRLSQESSVCGAMGRSSLSASTLKADDVIFDAVSDVLLPHSVTWVAHECLRAMENWLGVDDRSVSVNDILSPNASRISGSNFVALKKTLSKIKKGKSIFSRLAGSSEVTAGIQESGDLDNATSMGKESKITISGERDTASWRSAGFNDSEMEGECATELDNLHVLSLCYWPDITYDVSSQDVSVHIPLHRLLSLIIQKALRRCYGESAASESADTGAENPLSAVSLDFFGHILGGCHPYGFSAFVMEHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELDLFLLQCCAALAPADLYVNRIIERFGLSNYLSLNLERPSEYEPILVQEMLTLIIQILQERRFCGLTTAESLKRELVHRLAIGDATHSQLVKSLPRDLSKFDQLQEILDAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDLQVAEERYLRFCSVSALTAQLPRWTKIYYPLESIAGIATCKVVLQVIRAVLFYAVFTDNPTDSRAPYGVLLTALHLLALALDVCFQKKKSGDQSCDIGGSTPILDFASEEIAEGLNNGAGKQSLLSLLVFLMGMYKKDGADNFLEAGNCNLSSVIESLLKKFAEIDSRCMTKLQQLAPEIVSHLSQSLPRDDTSGSFSASDSEKRKAKARERQAAILEKMKAEQFKFLSSISSNIEDAPKSAPEVTNYDAEHVSEESVQDVCALCHDPNSRTPVSYLILLQKSRLLSFVDRGSPSWDQDQWLGKECGTISANNMVNQFGTNTPSSGLGVISSCQLAQVAEEAVNQFAYNGKPEEVNSVLEFVKAQFPSLRNIPIPFTFSNGRKCTASSMEMFEQDLYLSICREMRKNMTYPDLMKEDEECSVAEGGLKNRGNSDSFLLGKYVASISKEMRENASASEVSRGDRIAAESLVYDGFGPIDCDGIHLSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPALPWDLQRINEQPTVSGVGLSLDSSSSFTTREENTSFQLQQAVSLLQSASNVVGKADVIESFPLMKNEIMASNVEAVSRRMCKMYFQNKLDKFFGSARVNPSLIMWDALKYSLMSMEIAARSEKTSTTPIYDVNALDKELKSSSGFVLSLLLKVVQSMRSKNSLHVLQRFRGIQLFAESICSGTSIDNPGGRCKRGGNMLSILKHADVEVSYPDIQFWNRASDPVLARDPFSSLMWVLFCLPCQFILCKESLLSLVHVFYAVTLSQYYHVVGNFNPRLMS

ccccccccccccccHHHHHHHHHHHcccccccccccHHHHHHcccccHHHHHHHcccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHccccccccccccccccEEEEccccccccccEEcccccccccccccEEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEccccccHHHHHHHccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccEEcHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHccccccccccccccHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccHHHcccHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccHHHHHHHcccccccccHHHHHHHHHccccccccccccEEEEcccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHccccccccccHHHHHHHHHHHHcccccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEcccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccHHcccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccHHcccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccc

cccccccccccccHHHHHHHHHHHccccHHHHcccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccEEccccEEEEEccccccccEEEEEHccccccccccEEEEEEccccccccccHHHHcccccHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHcHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHEHHHHHHccccccccccccEEcEEcccccEEEccccccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHHccccccccHcccccccccccccccccccccccccccccccEEEEccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccEEEEccccEEEEEEEccccEEHHHHHHHHHHHHHHHHHccccHHccccccccHHcccccHHcccHHccccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccHHHHHHHccccccccHHHHHHHHHHHcccccccccccEEEEcHHHHHHccccHHcccHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccccccHcccccHHHHHHHHHHHHHHHHHHHHHHcHcccHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEEEcccccccEEEEEEEEcccEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcHccccccHHHHHHHHHHHHHcccHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccEcccccccccccccEHHcccHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHccEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHccccccccccccccHHHHHHHHHHHccccccccccccccccHHEEHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHcccccccccccHHHHHHccccEEccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccc

meidsppdfsppkprdRIVRRLMnigvpeefldysgivnfakndksripelvstilppdeEVAEVIQDAKaknkkvsvgpnmkgrFRESMLWLQWLMFEREPEKVLRKLSkigqrgvcgavwgnndiayrcrtcehdptcaicvpcfqngnhkehdysiiytgggccdcgdvtawkregfcsrhkgaeqiqplpekyansaapVLDALFIYWENKLSLAEsvgqenprasdhVAERRKLANELTFAVVEMLLEFCKNSESLLSFVSKRVISVIGLLDILVRAEMFSSDVVVRKLHELLLKLLGEPIFKYEFAKVFLSYYPVFvkdairehsddtikkypllstFSVQiftvptltpRLVKEMNLLEMLLGCLREIFdscagddsclQVAKWANLYETTNRVIGDIRFVMSHAAVSKYATHEQLNISKAWMKLLTFVqgmnpqkretgihireeneymhlplvldhsianiqpllvdgafssavseetrydfsmykqdigdgdslrhakvgrlsqessvcgamgrsslsastlkaddVIFDAVsdvllphsvTWVAHECLRAMEnwlgvddrsvsvndilspnasrisgsNFVALKKTLSKIKKGKSIFSrlagssevtagiqesgdldnatsmgkeskitisgerdtaswrsagfndsemegecateldnlhvlslcywpditydvssqdvsvhiPLHRLLSLIIQKALRRCygesaasesadtgaenplsavsldffghilggchpygfsafvmehPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELDLFLLQCCAALAPADLYVNRIIERFGlsnylslnlerpseyepILVQEMLTLIIQILQERRFCGLTTAESLKRELVHRLAIGDATHSQLVkslprdlskFDQLQEILDAVAMyshpsgfnqgmYSLRWSYWKeldiyhprwssrdlQVAEERYLRFCSVSaltaqlprwtkiyyplesiagiATCKVVLQVIRAVLFYAVftdnptdsrapyGVLLTALHLLALALDVCFqkkksgdqscdiggstpildFASEEIAEGLNNGAGKQSLLSLLVFLMGMykkdgadnfleagnCNLSSVIESLLKKFAEIDSRCMTKLQQLAPEIVSHLsqslprddtsgsfsasdSEKRKAKARERQAAILEKMKAEQFKFLSSISsniedapksapevtnydaehvseesVQDVCalchdpnsrtpVSYLILLQKSrllsfvdrgspswdqdqwlgkecgtisannmvnqfgtntpssglgvissCQLAQVAEEAVNQfayngkpeeVNSVLEFVKAqfpslrnipipftfsngrkctassmeMFEQDLYLSICREMrknmtypdlmkedeecsvaegglknrgnsdsfLLGKYVASISKEMRenasasevsrgdriaaeslvydgfgpidcdgihlsscghavhQGCLDRYVSSLKERYNrriifegghivdpdqgeflcpVCRQLANsvlpalpwdlqrineqptvsgvglsldssssfttreenTSFQLQQAVSLLQSAsnvvgkadviesfplmKNEIMASNVEAVSRRMCKMYFQNKLDKffgsarvnpsLIMWDALKYSLMSMEIAARsektsttpiydvnaldkelksssGFVLSLLLKVVQSMRSKNSLHVLQRFRGIQLFAESIcsgtsidnpggrckrggnmLSILKhadvevsypdiqfwnrasdpvlardpfssLMWVLFCLpcqfilckesLLSLVHVFYAVTLSQYYHVVGnfnprlms

meidsppdfsppkprdrIVRRLMNIGVPEEFLDYSGIVNFAKNDKSRIPELVSTILPPDEEVAEVIQdakaknkkvsvgpnmkgrfRESMLWLQWLMFEREPEKVLRKlskigqrgvcgavwGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYTGGGCCDCGDVTAWKREGFCSRHKGAEQIQPLPEKYANSAAPVLDALFIYWENKLSLAESVGQENPRASDHVAERRKLANELTFAVVEMLLEFCKNSESLLSFVSKRVISVIGLLDILVRAEMFSSDVVVRKLHELLLKLLGEPIFKYEFAKVFLSYYPVFVKDAIREHSDDTIKKYPLLSTFSVQIFTVPTLTPRLVKEMNLLEMLLGCLREIFDSCAGDDSCLQVAKWANLYETTNRVIGDIRFVMSHAAVSKYATHEQLNISKAWMKLLTFVQGMNPQKRETGIHIREENEYMHLPLVLDHSIANIQPLLVDGAFSSAVSEETRYDFSMYKQDIGDGDSLRHAKVGRLSQESSVCGAMGRSSLSASTLKADDVIFDAVSDVLLPHSVTWVAHECLRAMENWLGVDDRSVSVNDILspnasrisgsnfvALKKTLskikkgksifsrlagssevtagiqesgdldnatsmgkeskitisgerdtaswRSAGFNDSEMEGECATELDNLHVLSLCYWPDITYDVSSQDVSVHIPLHRLLSLIIQKALRRCYGESAASESADTGAENPLSAVSLDFFGHILGGCHPYGFSAFVMEHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELDLFLLQCCAALAPADLYVNRIIERFGLSNYLSLNLERPSEYEPILVQEMLTLIIQILQERRFCGLTTAESLKRELVHRLAIGDATHSQLVKSLPRDLSKFDQLQEILDAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDLQVAEERYLRFCSVsaltaqlprWTKIYYPLESIAGIATCKVVLQVIRAVLFYAVFTDNPTDSRAPYGVLLTALHLLALALDVCFQKKKSGDQSCDIGGSTPILDFASEEIAEGLNNGAGKQSLLSLLVFLMGMYKKDGADNFLEAGNCNLSSVIESLLKKFAEIDSRCMTKLQQLAPEIVSHlsqslprddtsgsfsasdsekrkAKARERQAAILEKMKAEQFKFLSSISSNIEDAPKSAPEVTNYDAEHVSEESVQDVCALCHDPNSRTPVSYLILLQKSRLLSFVDRGSPSWDQDQWLGKECGTISANNMVNQFGTNTPSSGLGVISSCQLAQVAEEAVNQFAYNGKPEEVNSVLEFVKAQfpslrnipipftFSNGRKCTASSMEMFEQDLYLSICREMRKNMTYPDLMKEDEECSVAEgglknrgnsdsfLLGKYVASISKEMRenasasevsrgdriAAESLVYDGFGPIDCDGIHLSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPALPWDLQRINEQPTVSGVGLSLDSSSSFTTREENTSFQLQQAVSLLQSASNVVGKADVIESFPLMKNEIMASNVEAVSRRMCKMYFQNKLDKFFGSARVNPSLIMWDALKYSLMSMEIAARsektsttpiyDVNALDKELKSSSGFVLSLLLKVVQSMRSKNSLHVLQRFRGIQLFAESIcsgtsidnpggrcKRGGNMLSILKHADVEVSYPDIQFWNRASDPVLARDPFSSLMWVLFCLPCQFILCKESLLSLVHVFYAVTLSQYYHVVGNFNPRLMS

MEIDSPPDFSPPKPRDRIVRRLMNIGVPEEFLDYSGIVNFAKNDKSRIPELVSTILPPDEEVAEVIQDAKAKNKKVSVGPNMKGRFRESMLWLQWLMFEREPEKVLRKLSKIGQRGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYTgggccdcgdVTAWKREGFCSRHKGAEQIQPLPEKYANSAAPVLDALFIYWENKLSLAESVGQENPRASDHVAERRKLANELTFAVVEMLLEFCKNSESLLSFVSKRVISVIGLLDILVRAEMFSSDVVVRklhelllkllGEPIFKYEFAKVFLSYYPVFVKDAIREHSDDTIKKYPLLSTFSVQIFTVPTLTPRLVKEMNLLEMLLGCLREIFDSCAGDDSCLQVAKWANLYETTNRVIGDIRFVMSHAAVSKYATHEQLNISKAWMKLLTFVQGMNPQKRETGIHIREENEYMHLPLVLDHSIANIQPLLVDGAFSSAVSEETRYDFSMYKQDIGDGDSLRHAKVGRLSQESSVCGAMGRSSLSASTLKADDVIFDAVSDVLLPHSVTWVAHECLRAMENWLGVDDRSVSVNDILSPNASRISGSNFVAlkktlskikkgksiFSRLAGSSEVTAGIQESGDLDNATSMGKESKITISGERDTASWRSAGFNDSEMEGECATELDNLHVLSLCYWPDITYDVSSQDVSVHIPLHRLLSLIIQKALRRCYGESAASESADTGAENPLSAVSLDFFGHILGGCHPYGFSAFVMEHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELDLFLLQCCAALAPADLYVNRIIERFGLSNYLSLNLERPSEYEPILVQEMLTLIIQILQERRFCGLTTAESLKRELVHRLAIGDATHSQLVKSLPRDLSKFDQLQEILDAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDLQVAEERYLRFCSVSALTAQLPRWTKIYYPLESIAGIATCKVVLQVIRAVLFYAVFTDNPTDSRAPYGVlltalhllalalDVCFQKKKSGDQSCDIGGSTPILDFASEEIAEGLNNGAGKQSLLSLLVFLMGMYKKDGADNFLEAGNCNLSSVIESLLKKFAEIDSRCMTKLQQLAPEIVSHLSQSLPRDDTSGSFSASDSekrkakarerqaaILEKMKAEQFKFLSSISSNIEDAPKSAPEVTNYDAEHVSEESVQDVCALCHDPNSRTPVSYLILLQKSRLLSFVDRGSPSWDQDQWLGKECGTISANNMVNQFGTNTPSSGLGVISSCQLAQVAEEAVNQFAYNGKPEEVNSVLEFVKAQFPSLRNIPIPFTFSNGRKCTASSMEMFEQDLYLSICREMRKNMTYPDLMKEDEECSVAEGGLKNRGNSDSFLLGKYVASISKEMRENASASEVSRGDRIAAESLVYDGFGPIDCDGIHLSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPALPWDLQRINEQPTvsgvglsldssssFTTREENTsfqlqqavsllqsasNVVGKADVIESFPLMKNEIMASNVEAVSRRMCKMYFQNKLDKFFGSARVNPSLIMWDALKYSLMSMEIAARSEKTSTTPIYDVNALDKELKSSSGFVLSLLLKVVQSMRSKNSLHVLQRFRGIQLFAESICSGTSIDNPGGRCKRGGNMLSILKHADVEVSYPDIQFWNRASDPVLARDPFSSLMWVLFCLPCQFILCKESLLSLVHVFYAVTLSQYYHVVGNFNPRLMS

*****************IVRRLMNIGVPEEFLDYSGIVNFAKNDKSRIPELVSTIL***************************GRFRESMLWLQWLMFEREPEKVLRKLSKIGQRGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYTGGGCCDCGDVTAWKREGFCSRHKGAEQIQPLPEKYANSAAPVLDALFIYWENKLSLA******************KLANELTFAVVEMLLEFCKNSESLLSFVSKRVISVIGLLDILVRAEMFSSDVVVRKLHELLLKLLGEPIFKYEFAKVFLSYYPVFVKDAIREHSDDTIKKYPLLSTFSVQIFTVPTLTPRLVKEMNLLEMLLGCLREIFDSCAGDDSCLQVAKWANLYETTNRVIGDIRFVMSHAAVSKYATHEQLNISKAWMKLLTFVQGMNPQKRETGIHIREENEYMHLPLVLDHSIANIQPLLVDGAFSSAVSEETRYDFSMYKQ**********************************TLKADDVIFDAVSDVLLPHSVTWVAHECLRAMENWLGVDDRSVSVNDIL***********************************************************************************ECATELDNLHVLSLCYWPDITYDVSSQDVSVHIPLHRLLSLIIQKALRRCYG***************LSAVSLDFFGHILGGCHPYGFSAFVMEHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELDLFLLQCCAALAPADLYVNRIIERFGLSNYLSLNLERPSEYEPILVQEMLTLIIQILQERRFCGLTTAESLKRELVHRLAIGDATHSQLVKSLPRDLSKFDQLQEILDAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDLQVAEERYLRFCSVSALTAQLPRWTKIYYPLESIAGIATCKVVLQVIRAVLFYAVFTDNPTDSRAPYGVLLTALHLLALALDVCFQKKKSGDQSCDIGGSTPILDFASEEIAEGLNNGAGKQSLLSLLVFLMGMYKKDGADNFLEAGNCNLSSVIESLLKKFAEIDSRCMTKLQQLAP*******************************************************************************VQDVCALCHDPNSRTPVSYLILLQKSRLLSFVDRGSPSWDQDQWLGKECGTISANNMVNQFGTNTPSSGLGVISSCQLAQVAEEAVNQFAYNGKPEEVNSVLEFVKAQFPSLRNIPIPFTFSNGRKCTASSMEMFEQDLYLSICREMRKNMTY*************************FLLGKYVA********************IAAESLVYDGFGPIDCDGIHLSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPALPWDLQRINE*******************************VSLLQSASNVVGKADVIESFPLMKNEIMASNVEAVSRRMCKMYFQNKLDKFFGSARVNPSLIMWDALKYSLMSMEIAAR*****TTPIYDVNALDKELKSSSGFVLSLLLKVVQSMRSKNSLHVLQRFRGIQLFAESICSGTSIDNPGGRCKRGGNMLSILKHADVEVSYPDIQFWNRASDPVLARDPFSSLMWVLFCLPCQFILCKESLLSLVHVFYAVTLSQYYHVVGNFN*****

*********************LMNIGVPEEFLDYSGIVNFAKNDKSRIPELVSTILPPDEEVAEVIQ****************GRFRESMLWLQWLMFEREPEKV************CGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYTGGGCCDCGDVTAWKREGFCSRHK***********YANSAAPVLDALFIYWENKLSLAESVGQENPRASDHVAERRKLANELTFAVVEMLLEFCKNSESLLSFVSKRVISVIGLLDILVRAEMFSSDVVVRKLHELLLKLLGEPIFKYEFAKVFLSYYPVFVKDAIREHSDDTIKKYPLLSTFSVQIFTVPTLTPRLVKEMNLLEMLLGCLREIFDSCAGDDSCLQVAKWANLYETTNRVIGDIRFVMSHAAVSKYATHEQLNISKAWMKLLTFVQGMNPQKRETGIHIREENEYMHLPLVLDHSIANIQPLLVDGAFSSAVSEETRYDFSMYKQDIGDGDSLRHAKVGRLSQES******************DDVIFDAVSDVLLPHSVTWVAHECLRAMENWLG*****************************************************IQESGDLDNATSMGKESKITISGERDTASWRSAGFNDSEMEGECATELDNLHVLSLCYWPDITYDVSSQDVSVHIPLHRLLSLIIQKALRRCYGESAASESADTGAENPLSAVSLDFFGHILGGCHPYGFSAFVMEHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELDLFLLQCCAALAPADLYVNRIIERFGLSNYLSLNLERPSEYEPILVQEMLTLIIQILQERRFCGLTTAESLKRELVHRLAIGDATHSQLVKSLPRDLSKFDQLQEILDAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDLQ**********************TKIYYPLESIAGIATCKVVLQVIRAVLFYAVFTDNPTDSRAPYGVLLTALHLLALALDVCF*************GSTPILDFASEEIAEGLNNGAGKQSLLSLLVFLMGM***********AGNCNLSSVIESLLKKFAEIDSRCM****************************************************************************************QDVCALCHDPNSRTPVSYLILLQKSRLLSFVDRGSPSWDQDQW**********************************************************E*****FP********************SMEMFEQDLYLSICREMRKNMTYPDLMKEDEEC****************************************************GFGPIDCDGIHLSSCGHAVHQGCLDRYV******************VDPDQGEFLCPVCRQLANSVLPALPWDL*******************SSFT***********************************************VSRRMCKMYF************V*PSLIMWDALKYSLMSMEIAAR******************LKSSSGFVLSLLLKVVQSMRSKNSLHVLQRFRGIQLFAESICSGTSI**********GN**********EVSYPDIQFWNRASDPVLARDPFSSLMWVLFCLPCQFILCKESLLSLVHVFYAVTLSQYYHVVGNFNP****

***********PKPRDRIVRRLMNIGVPEEFLDYSGIVNFAKNDKSRIPELVSTILPPDEEVAEVIQDAKAKNKKVSVGPNMKGRFRESMLWLQWLMFEREPEKVLRKLSKIGQRGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYTGGGCCDCGDVTAWKREGFCSRHKGAEQIQPLPEKYANSAAPVLDALFIYWENKLSLA**************AERRKLANELTFAVVEMLLEFCKNSESLLSFVSKRVISVIGLLDILVRAEMFSSDVVVRKLHELLLKLLGEPIFKYEFAKVFLSYYPVFVKDAIREHSDDTIKKYPLLSTFSVQIFTVPTLTPRLVKEMNLLEMLLGCLREIFDSCAGDDSCLQVAKWANLYETTNRVIGDIRFVMSHAAVSKYATHEQLNISKAWMKLLTFVQGMNPQKRETGIHIREENEYMHLPLVLDHSIANIQPLLVDGAFSSAVSEETRYDFSMYKQDIGDGDSLRHAKVGRLSQESSVCGAMGRSSLSASTLKADDVIFDAVSDVLLPHSVTWVAHECLRAMENWLGVDDRSVSVNDILSPNASRISGSNFVALKKTLSKIKKGKSIFSRLAGSSEVTAGIQESGDLDNATSMGKESKITISGERDTASWRSAGFNDSEMEGECATELDNLHVLSLCYWPDITYDVSSQDVSVHIPLHRLLSLIIQKALRR****************NPLSAVSLDFFGHILGGCHPYGFSAFVMEHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELDLFLLQCCAALAPADLYVNRIIERFGLSNYLSLNLERPSEYEPILVQEMLTLIIQILQERRFCGLTTAESLKRELVHRLAIGDATHSQLVKSLPRDLSKFDQLQEILDAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDLQVAEERYLRFCSVSALTAQLPRWTKIYYPLESIAGIATCKVVLQVIRAVLFYAVFTDNPTDSRAPYGVLLTALHLLALALDVCFQKKKSGDQSCDIGGSTPILDFASEEIAEGLNNGAGKQSLLSLLVFLMGMYKKDGADNFLEAGNCNLSSVIESLLKKFAEIDSRCMTKLQQLAPEIVSHL***************************RQAAILEKMKAEQFKFLSSISSNIEDAPKSAPEVTNYDAEHVSEESVQDVCALCHDPNSRTPVSYLILLQKSRLLSFVDRGSPSWDQDQWLGKECGTISANNMVNQFGTNTPSSGLGVISSCQLAQVAEEAVNQFAYNGKPEEVNSVLEFVKAQFPSLRNIPIPFTFSNGRKCTASSMEMFEQDLYLSICREMRKNMTYPDLMKEDEECSVAEGGLKNRGNSDSFLLGKYVASISKE************GDRIAAESLVYDGFGPIDCDGIHLSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPALPWDLQRINEQPTV**********************QLQQAVSLLQSASNVVGKADVIESFPLMKNEIMASNVEAVSRRMCKMYFQNKLDKFFGSARVNPSLIMWDALKYSLMSMEIAARSEKTSTTPIYDVNALDKELKSSSGFVLSLLLKVVQSMRSKNSLHVLQRFRGIQLFAESICSGTSIDNPGGRCKRGGNMLSILKHADVEVSYPDIQFWNRASDPVLARDPFSSLMWVLFCLPCQFILCKESLLSLVHVFYAVTLSQYYHVVGNFNPRLMS

**********PPKPRDRIVRRLMNIGVPEEFLDYSGIVNFAKNDKSRIPELVSTILPPDEEVAEVIQDAKAKNKKVSVGPNMKGRFRESMLWLQWLMFEREPEKVLRKLSKIGQRGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYTGGGCCDCGDVTAWKREGFCSRHKGAEQIQPLPEKYANSAAPVLDALFIYWENKLSLAESVGQENPRASDHVAERRKLANELTFAVVEMLLEFCKNSESLLSFVSKRVISVIGLLDILVRAEMFSSDVVVRKLHELLLKLLGEPIFKYEFAKVFLSYYPVFVKDAIREHSDDTIKKYPLLSTFSVQIFTVPTLTPRLVKEMNLLEMLLGCLREIFDSCAGDDSCLQVAKWANLYETTNRVIGDIRFVMSHAAVSKYATHEQLNISKAWMKLLTFVQGMNPQKRETGIHIREENEYMHLPLVLDHSIANIQPLLVDGAFSSAVSEETRYDFSMYKQDIGDGDSLRHAKVGRLSQESSVCGAMGRSSLSASTLKADDVIFDAVSDVLLPHSVTWVAHECLRAMENWLGVDDRSVS*N************SNFVALKKTLSKIKKGKSIFSRLAGSSEVTAGIQESGDLDNATSMGKE*************************GECATELDNLHVLSLCYWPDITYDVSSQDVSVHIPLHRLLSLIIQKALRRCYGESAASESADTGAENPLSAVSLDFFGHILGGCHPYGFSAFVMEHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELDLFLLQCCAALAPADLYVNRIIERFGLSNYLSLNLERPSEYEPILVQEMLTLIIQILQERRFCGLTTAESLKRELVHRLAIGDATHSQLVKSLPRDLSKFDQLQEILDAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDLQVAEERYLRFCSVSALTAQLPRWTKIYYPLESIAGIATCKVVLQVIRAVLFYAVFTDNPTDSRAPYGVLLTALHLLALALDVCFQKKKS**QSCDIGGSTPILDFASEEIAEGLNNGAGKQSLLSLLVFLMGMYKKDGADNFLEAGNCNLSSVIESLLKKFAEIDSRCMTKLQQLAPEIVSH******************************AAILEKMK**********************************ESVQDVCALCHDPNSRTPVSYLILLQKSRLLSFVDRGSPSW************************************CQLAQVAEEAVNQFAYNGKPEEVNSVLEFVKAQFPSLRNIPIPFTFSNGRKCTASSMEMFEQDLYLSICREMRKNMTYP*********************SDSFLLGKY*ASISKEM*******************LVYDGFGPIDCDGIHLSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPALPWDLQ*********************TTREENTSFQLQQAVSLLQSASNVVGKADVIESFPLMKNEIMASNVEAVSRRMCKMYFQNKLDKFFGSARVNPSLIMWDALKYSLMSMEIAARSEKTSTTPIYDVNALDKELKSSSGFVLSLLLKVVQSMRSKNSLHVLQRFRGIQLFAESICSGTSI***********NMLSILKHADVEVSYPDIQFWNRASDPVLARDPFSSLMWVLFCLPCQFILCKESLLSLVHVFYAVTLSQYYHVVGNFN*****

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1764	2.2.26 [Sep-21-2011]
Q6WKZ8		1755	E3 ubiquitin-protein liga	yes	no	0.246	0.247	0.273	2e-29
Q8IWV8		1755	E3 ubiquitin-protein liga	yes	no	0.179	0.180	0.290	2e-28
Q8IWV7		1749	E3 ubiquitin-protein liga	no	no	0.284	0.286	0.233	6e-22
Q9VX91		1824	E3 ubiquitin-protein liga	yes	no	0.179	0.173	0.273	2e-21
Q5U430		1889	E3 ubiquitin-protein liga	no	no	0.231	0.215	0.225	2e-20
O70481		1757	E3 ubiquitin-protein liga	no	no	0.178	0.179	0.262	2e-20
Q6ZT12		1888	E3 ubiquitin-protein liga	no	no	0.173	0.162	0.243	3e-20
O13731		2052	E3 ubiquitin-protein liga	yes	no	0.107	0.092	0.261	2e-14
P91133		2058	E3 ubiquitin-protein liga	yes	no	0.132	0.113	0.25	4e-14
O60152		1958	E3 ubiquitin-protein liga	no	no	0.052	0.046	0.356	3e-13

>sp\|Q6WKZ8\|UBR2_MOUSE E3 ubiquitin-protein ligase UBR2 OS=Mus musculus GN=Ubr2 PE=1 SV=2	Back alignment and function desciption

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 141/516 (27%), Positives = 233/516 (45%), Gaps = 82/516 (15%)

Query: 682  ITYDVSSQDVSVHIPLHRLLSLIIQKALRRCYGESAASESADTGAEN-PLSAVSLDFFGH 740
            I Y VS + VS+H+P+ RLL+ +        +   + SE A    E  PLS +S      
Sbjct: 599  IRYCVSQEKVSIHLPISRLLAGL--------HVLLSKSEVAYKFPELLPLSELS------ 644

Query: 741  ILGGCHPYGFSAFVMEHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELD 800
                         ++EHPLR  V CAQVHAGMWRRNG + ++   +Y  V+   +  + D
Sbjct: 645  ----------PPMLIEHPLRCLVLCAQVHAGMWRRNGFSLVNQIYYYHNVKCRREMFDKD 694

Query: 801  LFLLQCCAALAPADLYVNRIIERFGLSNYLS-----------LNLERPSEYEPILVQEML 849
            + +LQ   ++   + ++  ++ RF L    S           +  +   +    L++EML
Sbjct: 695  IVMLQTGVSMMDPNHFLMIMLSRFELYQLFSTPDYGKRFSSEVTHKDVVQQNNTLIEEML 754

Query: 850  TLIIQILQERRFCGL---TTAESLKRELVHRLAIGDATHSQLVKSLPRDLSKFDQLQEIL 906
             LII ++ ER   G+      + +KRE++H+L+I    HS+LVKSLP D +K   ++ ++
Sbjct: 755  YLIIMLVGERFNPGVGQVAATDEIKREIIHQLSIKPMAHSELVKSLPEDENKETGMESVI 814

Query: 907  DAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDLQVAEERYLRFCSVSAL-TAQL 965
            ++VA +  P    +GMY L+    KE ++Y   +S  +   AEE   +    +   TA  
Sbjct: 815  ESVAHFKKPGLTGRGMYELKPECAKEFNLYFYHFSRAEQSKAEEAQRKLKRENKEDTALP 874

Query: 966  PRWTKIYYPL-ESIAGIATCKVVLQVIRAVLFYAVFTDNPTDSRAPYGVLLTALHLLALA 1024
            P     + PL  S+  I  C V+L ++  +L +AV       S +   +L   LHL+ +A
Sbjct: 875  PPALPPFCPLFASLVNILQCDVMLYIMGTILQWAVEHHGSAWSES---MLQRVLHLIGMA 931

Query: 1025 LDVCFQKKKSGDQSCDIGGSTPILDFASEEIAEGLNNGAGKQSLLSLLVFLMGMYKKDGA 1084
            L    Q++K   ++  + G      F +++I++  +      S+L++L  L         
Sbjct: 932  L----QEEKHHLENA-VEGHVQTFTF-TQKISKPGDAPHNSPSILAMLETLQNAPS---- 981

Query: 1085 DNFLEAGNCNLSSVIESLLKKFAEIDSRCMTKLQQLAPEIVSHLSQSLPRDDTSGSFSAS 1144
               LEA       +I  LLK F  I               +   S S P  +  G+    
Sbjct: 982  ---LEAHK----DMIRWLLKMFNAIKK-------------IRECSSSSPVAEAEGTIMEE 1021

Query: 1145 DS-------EKRKAK-ARERQAAILEKMKAEQFKFL 1172
             S        KRKA+ AR R+  I+ +M   Q  F+
Sbjct: 1022 SSRDKDKAERKRKAEIARLRREKIMAQMSEMQRHFI 1057

E3 ubiquitin-protein ligase which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N-terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation. Plays a critical role in chromatin inactivation and chromosome-wide transcriptional silencing during meiosis via ubiquitination of histone H2A. Binds leucine and is a negative regulator of the leucine-mTOR signaling pathway, thereby controlling cell growth.
Mus musculus (taxid: 10090)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp\|Q8IWV8\|UBR2_HUMAN E3 ubiquitin-protein ligase UBR2 OS=Homo sapiens GN=UBR2 PE=1 SV=1	Back alignment and function description

>sp\|Q8IWV7\|UBR1_HUMAN E3 ubiquitin-protein ligase UBR1 OS=Homo sapiens GN=UBR1 PE=1 SV=1	Back alignment and function description

>sp\|Q9VX91\|UBR1_DROME E3 ubiquitin-protein ligase UBR1 OS=Drosophila melanogaster GN=UBR1 PE=2 SV=2	Back alignment and function description

>sp\|Q5U430\|UBR3_MOUSE E3 ubiquitin-protein ligase UBR3 OS=Mus musculus GN=Ubr3 PE=1 SV=3	Back alignment and function description

>sp\|O70481\|UBR1_MOUSE E3 ubiquitin-protein ligase UBR1 OS=Mus musculus GN=Ubr1 PE=1 SV=2	Back alignment and function description

>sp\|Q6ZT12\|UBR3_HUMAN E3 ubiquitin-protein ligase UBR3 OS=Homo sapiens GN=UBR3 PE=2 SV=2	Back alignment and function description

>sp\|O13731\|UBR11_SCHPO E3 ubiquitin-protein ligase ubr11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubr11 PE=3 SV=1	Back alignment and function description

>sp\|P91133\|UBR1_CAEEL E3 ubiquitin-protein ligase ubr-1 OS=Caenorhabditis elegans GN=ubr-1 PE=1 SV=2	Back alignment and function description

>sp\|O60152\|UBR1_SCHPO E3 ubiquitin-protein ligase ubr1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubr1 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1764
255583117		2073	ubiquitin ligase E3 alpha, putative [Ric	0.981	0.835	0.627	0.0
359482107		2048	PREDICTED: E3 ubiquitin-protein ligase U	0.974	0.839	0.628	0.0
449483643		2089	PREDICTED: LOW QUALITY PROTEIN: E3 ubiqu	0.973	0.822	0.593	0.0
449440333		2099	PREDICTED: LOW QUALITY PROTEIN: E3 ubiqu	0.973	0.818	0.593	0.0
224090687		1774	predicted protein [Populus trichocarpa]	0.958	0.953	0.591	0.0
356567933		2036	PREDICTED: E3 ubiquitin-protein ligase U	0.970	0.840	0.587	0.0
356523153		2037	PREDICTED: E3 ubiquitin-protein ligase U	0.972	0.841	0.590	0.0
357505675		2105	E3 ubiquitin-protein ligase ubr1 [Medica	0.955	0.800	0.568	0.0
297806169		1996	hypothetical protein ARALYDRAFT_487009 [	0.947	0.837	0.521	0.0
30679594		2006	proteolysis 6 [Arabidopsis thaliana] gi\|	0.946	0.832	0.518	0.0

>gi\|255583117\|ref\|XP_002532325.1\| ubiquitin ligase E3 alpha, putative [Ricinus communis] gi\|223527968\|gb\|EEF30052.1\| ubiquitin ligase E3 alpha, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 2172 bits (5628), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1109/1768 (62%), Positives = 1361/1768 (76%), Gaps = 36/1768 (2%)

Query: 1    MEIDSPPD-FSPPKPRDRIVRRLMNIGVPEEFLD---YSGIVNFAKNDKSRIPELVSTIL 56
            M+IDSPP+  +P KPRDR++RRL+ +G+ EE+L    Y GIV F  ++ S IPELVS+IL
Sbjct: 1    MDIDSPPETINPIKPRDRVMRRLVQLGIGEEYLQRRYYPGIVAFLMDNPSWIPELVSSIL 60

Query: 57   PPDEEVAEVIQDAKAKNKKVSVGPNMKGRFRESMLWLQWLMFEREPEKVLRKLSKIGQ-R 115
            P DEEVAE +Q  K+++KKV   P MK  FRE M+WLQWLMF  EP   L+ LSK+   R
Sbjct: 61   PLDEEVAEALQQNKSESKKVQ-SPTMKRYFRECMVWLQWLMFLGEPATALKSLSKMSTGR 119

Query: 116  GVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYTGGGCCDCGDVTAW 175
            GVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHK+HDYSIIYTGGGCCDCGDVTAW
Sbjct: 120  GVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKDHDYSIIYTGGGCCDCGDVTAW 179

Query: 176  KREGFCSRHKGAEQIQPLPEKYANSAAPVLDALFIYWENKLSLAESVGQENPRASDHVAE 235
            KREGFCS HKGAEQIQPLPE+YANS  PVLDALF  W+ KL  AE++  ENPR+SD V  
Sbjct: 180  KREGFCSSHKGAEQIQPLPEEYANSVGPVLDALFSCWKKKLVSAETICHENPRSSDRVVL 239

Query: 236  RRKLANELTFAVVEMLLEFCKNSESLLSFVSKRVISVIGLLDILVRAEMFSSDVVVRKLH 295
             +K+ANELT+ VVEMLLEFCK+SESLLSFVS++VIS++GLL+ILVRAE F S+ V RKL+
Sbjct: 240  CKKVANELTYVVVEMLLEFCKHSESLLSFVSRKVISLVGLLEILVRAERFLSEGVARKLN 299

Query: 296  ELLLKLLGEPIFKYEFAKVFLSYYPVFVKDAIREHSDDTIKKYPLLSTFSVQIFTVPTLT 355
            E+LLKLLGEPIFKYEF KVF+SYYP+ V +A++E  D ++KKYPLLSTFSVQI +VPTLT
Sbjct: 300  EMLLKLLGEPIFKYEFGKVFVSYYPLVVHEALKEGGDSSLKKYPLLSTFSVQILSVPTLT 359

Query: 356  PRLVKEMNLLEMLLGCLREIFDSCAGDDSCLQVAKWANLYETTNRVIGDIRFVMSHAAVS 415
            PRLVKEMNLL MLLGCL +IF  CAG+D  LQV KW NLYETT RV+ DIRFVMSHA V 
Sbjct: 360  PRLVKEMNLLAMLLGCLGDIFIHCAGEDDRLQVTKWGNLYETTIRVVEDIRFVMSHAIVP 419

Query: 416  KYATHEQLNISKAWMKLLTFVQGMNPQKRETGIHIREENEYMHLPLVLDHSIANIQPLLV 475
            K+ T EQ +I + WM+LL+++QGM+P +RE G+HI EENE ++L  VLDHS+ANI  LLV
Sbjct: 420  KHVTREQRDILRTWMRLLSYLQGMSPLRREIGLHIEEENENINLLFVLDHSVANIHSLLV 479

Query: 476  DGAFSSAVSEETRYD-FS-MYKQDIGDGDSLRHAKVGRLSQESSVCGAMGRSSLSASTLK 533
            DGAFS+  SE+T  D FS M KQ++ + D +R+AKVGRLSQESSVCG +GRS+  A    
Sbjct: 480  DGAFST--SEDTDDDVFSGMSKQNMSEEDGMRYAKVGRLSQESSVCGVLGRSNQDA---- 533

Query: 534  ADDVIFDAVSDVLLPHSVTWVAHECLRAMENWLGVDDRSVSVNDILSPNASRISGSNFVA 593
              +V  D++   L+P SV+ + +ECLRA++NWLGVD  S +    LS   +  S SN +A
Sbjct: 534  --EVASDSIYHPLVPSSVSLLMYECLRAIDNWLGVDHASGA----LSSANTSTSNSNILA 587

Query: 594  LKKTLSKIKKGKSIFSRLAGSSE---------VTAGIQESGDLDNATSMGKESKITISGE 644
            LKKT  K +KGKSIFS    S+E           +G+  S D++N  S+G++ KI  SGE
Sbjct: 588  LKKTFLKFRKGKSIFSGFTSSNEDQSRNFFPPANSGLCMSMDVENTKSVGQDCKIMGSGE 647

Query: 645  RDTASWRSAGFNDSEMEGECATELDNLHVLSLCYWPDITYDVSSQDVSVHIPLHRLLSLI 704
             +TA       ++  MEG  +TE +   +LS   WP+I YDVSSQDVSVHIPLHRLLSL+
Sbjct: 648  PETAK-----SDECLMEGNSSTESEVFRILSSSDWPNIVYDVSSQDVSVHIPLHRLLSLL 702

Query: 705  IQKALRRCYGESAASESADTGAENPLSAVSLDFFGHILGGCHPYGFSAFVMEHPLRIRVF 764
            +QKALRRCYG+     +   G     S++  DFFG +LGGCHP GFSAFVMEHPLR RVF
Sbjct: 703  LQKALRRCYGDPEVRSTTSAGTYTSSSSMYDDFFGRVLGGCHPRGFSAFVMEHPLRNRVF 762

Query: 765  CAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELDLFLLQCCAALAPADLYVNRIIERF 824
            CA+VHAGMWR+NGDAA+ S EWYR+VRWSEQGLELDLFLLQCCAALAPADLYVNRI+ERF
Sbjct: 763  CAEVHAGMWRKNGDAAILSSEWYRSVRWSEQGLELDLFLLQCCAALAPADLYVNRILERF 822

Query: 825  GLSNYLSLNLERPSEYEPILVQEMLTLIIQILQERRFCGLTTAESLKRELVHRLAIGDAT 884
            GLS+Y  L+LE+ SEYEP+LVQEMLTLIIQI+QERRF GLT  E+LKREL+H+L+IGDAT
Sbjct: 823  GLSDYPFLHLEKSSEYEPVLVQEMLTLIIQIIQERRFSGLTPDENLKRELIHKLSIGDAT 882

Query: 885  HSQLVKSLPRDLSKFDQLQEILDAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRD 944
             SQLVKSLPRDLSK+D+LQEILD VA+YS+PSGFNQGMYSLRW YWKELD+YHPRW+SRD
Sbjct: 883  RSQLVKSLPRDLSKYDRLQEILDTVAVYSNPSGFNQGMYSLRWMYWKELDLYHPRWNSRD 942

Query: 945  LQVAEERYLRFCSVSALTAQLPRWTKIYYPLESIAGIATCKVVLQVIRAVLFYAVFTDNP 1004
            LQVAEERY+R+CSVSALT QLPRW KI+ PL+ +A IA CK+VL++IRAVLFYAVF+D  
Sbjct: 943  LQVAEERYIRYCSVSALTTQLPRWMKIHPPLKGVASIANCKMVLKIIRAVLFYAVFSDKL 1002

Query: 1005 TDSRAPYGVLLTALHLLALALDVCFQKKKSGDQSCDIGGSTPILDFASEEIAEGLNNGAG 1064
            T+ RAP G+L+ ALHLL+L LD+C Q+++ GD S   G S P+L FA EEI EG++ GAG
Sbjct: 1003 TEPRAPDGILIMALHLLSLGLDICLQQREPGDLSLFCGDSIPMLAFAVEEIHEGISYGAG 1062

Query: 1065 KQSLLSLLVFLMGMYKKDGADNFLEAGNCNLSSVIESLLKKFAEIDSRCMTKLQQLAPEI 1124
            +QSLLSLLV LM M+K+D  DNF E+  CN+SS+IESLLKKFAE+DS C TKLQQLAPE+
Sbjct: 1063 EQSLLSLLVSLMRMHKRDNLDNFSESDGCNISSLIESLLKKFAELDSGCRTKLQQLAPEV 1122

Query: 1125 VSHLSQSLPRDDTSGSFSASDSEKRKAKARERQAAILEKMKAEQFKFLSSISSNIEDAPK 1184
            V HLSQ  P  D     SASDSEKRKAKARERQAAIL KMKAEQ KFLSSI+S  ED  +
Sbjct: 1123 VIHLSQPSPHSDAHSVGSASDSEKRKAKARERQAAILAKMKAEQSKFLSSINSTNEDDLR 1182

Query: 1185 SAPEVTNYDAEHVSEESVQDVCALCHDPNSRTPVSYLILLQKSRLLSFVDRGSPSWDQDQ 1244
            +  E +N D E   EES QDVC+LCHDPNS+ PVS+LILLQKSRLLS  DRG PSW+Q +
Sbjct: 1183 AGLEESNTDDEQHLEESAQDVCSLCHDPNSKNPVSFLILLQKSRLLSLTDRGPPSWNQAR 1242

Query: 1245 WLGKECGTISANNMVNQFGTNTPSSGLGVISSCQLAQVAEEAVNQFAYNGKPEEVNSVLE 1304
               KE  ++    ++ Q G +  SSGL V SS QL+Q+ + AVN+FA   +P E+ + LE
Sbjct: 1243 RWEKEQVSLMTIKVIEQAGISLSSSGLEVDSSDQLSQLVQNAVNEFAEYAQPGEIINFLE 1302

Query: 1305 FVKAQFPSLRNIPIPFTFSNGRKCTASSMEMFEQDLYLSICREMRKNMTYPDLMKEDEEC 1364
            FV+AQ PSLRNI +P    +G    A S+E  E+D Y+SI +E+  +  +     +D + 
Sbjct: 1303 FVRAQSPSLRNIQVPSPLKDGNDRNACSLETLERDYYISIRKEINNHTIFSSSGLKDVDI 1362

Query: 1365 SVAEGGLKNRGNSDSFLLGKYVASISKEMRENASASEVSRGDRIAAESLV--YDGFGPID 1422
            S  EGGLK+     S LLGKY+A+ S+E+ E+ S+SE S  D    ES +  Y+ FGP D
Sbjct: 1363 SAGEGGLKSNRGVSSVLLGKYIAAFSREITEHPSSSENSLDDIAKRESTLQAYEKFGPAD 1422

Query: 1423 CDGIHLSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSV 1482
            CDG++LSSCGHAVHQGCLDRY+SSLKER+ RR++FEGGHIVDPDQGEFLCPVCR+L+NS+
Sbjct: 1423 CDGVYLSSCGHAVHQGCLDRYLSSLKERFVRRLVFEGGHIVDPDQGEFLCPVCRRLSNSI 1482

Query: 1483 LPALPWDLQRINEQPTVSGVGLSLDSSSSFTTREENTSFQLQQAVSLLQSASNVVGKADV 1542
            LP+LP D QR+ ++P +S V  +      F + E + S  L +A+SLLQSA+N++ K D+
Sbjct: 1483 LPSLPGDFQRVWKEPMISTVSSTDAVGHLFASCEGSDSLWLPRALSLLQSAANMIQKGDI 1542

Query: 1543 IESFPLMKNEIMASNVEAVSRRMCKMYFQNKLDKFFGSARVNPSLIMWDALKYSLMSMEI 1602
             ++FPL +NE M  +++++SR + KMYF ++ DKF  S R N  +IMWD LKYSL+SMEI
Sbjct: 1543 WKTFPLQRNERMKQDLDSISRVLFKMYFPSRQDKFSRSTRANQFMIMWDTLKYSLVSMEI 1602

Query: 1603 AARSEKTSTTPIYDVNALDKELKSSSGFVLSLLLKVVQSMRSKNSLHVLQRFRGIQLFAE 1662
            AARS +   TP Y ++AL KEL+SSSGFVL+LLLK+V S+RSKNSLHVLQRFRGIQLFA+
Sbjct: 1603 AARSGRIHMTPTYSLDALYKELQSSSGFVLALLLKIVHSLRSKNSLHVLQRFRGIQLFAK 1662

Query: 1663 SICSGTSIDNPGGRCKRGGNMLSILKHADVEVSYPDIQFWNRASDPVLARDPFSSLMWVL 1722
            SICSG S D+    C R G+  SILK  + E+ YPDIQFWN+A+DP+L  D FSSLMWVL
Sbjct: 1663 SICSGVSADHASRTCGRKGDASSILKQVEKELPYPDIQFWNQAADPILIHDAFSSLMWVL 1722

Query: 1723 FCLPCQFILCKESLLSLVHVFYAVTLSQ 1750
            FCLP  F+ C+ESLLSLVH+FY V+++Q
Sbjct: 1723 FCLPHPFLSCEESLLSLVHIFYLVSIAQ 1750

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359482107\|ref\|XP_002270537.2\| PREDICTED: E3 ubiquitin-protein ligase UBR2-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449483643\|ref\|XP_004156647.1\| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UBR1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449440333\|ref\|XP_004137939.1\| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UBR1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224090687\|ref\|XP_002309059.1\| predicted protein [Populus trichocarpa] gi\|222855035\|gb\|EEE92582.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356567933\|ref\|XP_003552169.1\| PREDICTED: E3 ubiquitin-protein ligase UBR3-like [Glycine max]	Back alignment and taxonomy information

>gi\|356523153\|ref\|XP_003530206.1\| PREDICTED: E3 ubiquitin-protein ligase UBR3-like [Glycine max]	Back alignment and taxonomy information

>gi\|357505675\|ref\|XP_003623126.1\| E3 ubiquitin-protein ligase ubr1 [Medicago truncatula] gi\|355498141\|gb\|AES79344.1\| E3 ubiquitin-protein ligase ubr1 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297806169\|ref\|XP_002870968.1\| hypothetical protein ARALYDRAFT_487009 [Arabidopsis lyrata subsp. lyrata] gi\|297316805\|gb\|EFH47227.1\| hypothetical protein ARALYDRAFT_487009 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|30679594\|ref\|NP_195851.2\| proteolysis 6 [Arabidopsis thaliana] gi\|332003074\|gb\|AED90457.1\| proteolysis 6 [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1764
TAIR\|locus:2180147		2006	PRT6 "proteolysis 6" [Arabidop	0.714	0.628	0.529	0.0
UNIPROTKB\|F1P5I1		1737	UBR1 "Uncharacterized protein"	0.139	0.141	0.282	1e-51
ZFIN\|ZDB-GENE-081107-29		1730	ubr2 "ubiquitin protein ligase	0.111	0.113	0.338	5.7e-50
UNIPROTKB\|F6X9P0		1753	UBR1 "Uncharacterized protein"	0.141	0.142	0.273	1.9e-48
UNIPROTKB\|F1RUT9		1382	UBR2 "Uncharacterized protein"	0.172	0.219	0.298	2e-48
UNIPROTKB\|J9P162		1753	UBR1 "Uncharacterized protein"	0.141	0.142	0.273	5.1e-48
UNIPROTKB\|D4A9U6		1754	Ubr2 "Protein Ubr2" [Rattus no	0.171	0.172	0.310	5.5e-48
UNIPROTKB\|E1C1D2		1755	UBR2 "Uncharacterized protein"	0.139	0.140	0.297	8.7e-48
UNIPROTKB\|E1BIW0		1742	UBR1 "Uncharacterized protein"	0.141	0.142	0.273	1.2e-47
DICTYBASE\|DDB_G0283475		2375	DDB_G0283475 "E3 ubiquitin-pro	0.085	0.063	0.333	1.7e-47

TAIR\|locus:2180147 PRT6 "proteolysis 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3253 (1150.2 bits), Expect = 0., Sum P(3) = 0.
 Identities = 682/1288 (52%), Positives = 865/1288 (67%)

Query:    12 PKPRDRIVRRLMNIGVPEEFLDYSGIVNFAKNDKSRIPELVSTILPPDEEVAEVIQDAKA 71
             P   D ++ RL ++GVP+++    G+V F + + ++I ELVS +LP D++V   +++A+ 
Sbjct:    13 PSSHDLVIERLASVGVPKKYRSKRGLVEFVRANPAKISELVSALLPTDDDVKLGLKEARE 72

Query:    72 KNKKVSVGPNMKGRFRESMLWLQWLMFEREPEKVLRKLSKIG--QRGVCGAVWGNNDIAY 129
             + +K +V P MK RFRESM  LQWLMF+ EP+  LR L+K+   QRGVCG+VWG NDIAY
Sbjct:    73 RPRKSAVSPTMKKRFRESMNMLQWLMFQDEPDVSLRNLAKLNLDQRGVCGSVWGQNDIAY 132

Query:   130 RCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYTXXXXXXXXXVTAWKREGFCSRHKGAEQ 189
             RCRTCE+DPTCAICVPCFQNG+H  HDYSIIYT          TAWK +GFCS HKG+EQ
Sbjct:   133 RCRTCENDPTCAICVPCFQNGDHNSHDYSIIYTGGGCCDCGDETAWKPDGFCSNHKGSEQ 192

Query:   190 IQPLPEKYANSAAPVLDALFIYWENKLSLAESVGQENPRASDHVAERRKLANELTFAVVE 249
             I+PL E  ANS  P+LDALF  W NKL  AES GQ+  R++D +   +K++NELTF VVE
Sbjct:   193 IRPLSENLANSVGPILDALFTCWNNKLLSAESSGQKGARSNDTLVILQKMSNELTFIVVE 252

Query:   250 MLLEFCKNSESLLSFVSKRVISVIGLLDILVRAEMFSSDVVVRXXXXXXXXXXGEPIFKY 309
             MLLEF  +SESLLSFVS+R+IS  GLL IL++AE F    V++          G+P+FK 
Sbjct:   253 MLLEFSMSSESLLSFVSRRIISSSGLLSILLKAERFLDQDVMKKLHDLFLKLIGDPVFKC 312

Query:   310 EFAKVFLSYYPVFVKDAIREHSDDTIKKYPLLSTFSVQIFTVPTLTPRLVKEMNLLEMLL 369
             EFAK F+SYYPV + + +++ +D+  KKYPLLSTFSVQI TVPTLTP LVKEMNLL MLL
Sbjct:   313 EFAKAFVSYYPVVISEVVKQGTDNAFKKYPLLSTFSVQILTVPTLTPFLVKEMNLLAMLL 372

Query:   370 GCLREIFDSCAGDDSCLQVAKWANLYETTNRVIGDIRFVMSHAAVSKYATHEQLNISKAW 429
             GCL +IF SC+G+D  LQ  K   L ET+ RVIGD++FVMSHA VSKYATHE   +S++W
Sbjct:   373 GCLSDIFVSCSGEDGLLQATKLERLCETSERVIGDLKFVMSHAIVSKYATHEHRELSRSW 432

Query:   430 MKLLTFVQGMNPQKRETGIHIREENEYMHLPLVLDHSIANIQPLLVDGAFSSAVSEETRY 489
             + LLTF QGMNP KRETGI I EEN+YMHL  VL HSIA I  LLV+G +S+A  EE   
Sbjct:   433 LTLLTFAQGMNPLKRETGIPIDEENDYMHLFFVLGHSIAVIHSLLVNGTYSAASDEEIEN 492

Query:   490 DFSMYKQ-DIGDGDSLRHAKVGRLSQESSVCGAMGRSSLSASTLKADDVIFDAVSDVLLP 548
             D +  ++ D  DGD  R+AKVGRLS E SVC A+  SS   S++ ++    D     LLP
Sbjct:   493 DRNAKEEFDKCDGDGERYAKVGRLSHEDSVCTAIVSSSSFDSSMASEVHKIDPFH-ALLP 551

Query:   549 HSVTWVAHECLRAMENWLGVDDRSVSVNDILSPNASR-ISGSNFVAXXXXXXXXXXXXXX 607
              S  ++  ECL+ +E  LG D+        LS ++ R I  S                  
Sbjct:   552 SSAIYLIRECLKVLETCLGNDEGISKFLCKLSSSSGRNIPESKMSWPRRDLLNVETGGSV 611

Query:   608 FSRLAGSS-EVTAGIQE-SGDLDNATSMGKESKITISGERD-TASWRSAGFNDSEMEGEC 664
              S LA SS + + G+    GD+    S+          + D TA  +    N +++    
Sbjct:   612 SSNLASSSRDPSTGLSPLCGDIQTNLSLDNVCGPYGVVQTDVTADSKRVSCNSADLTKNA 671

Query:   665 ATELDNLHVLSLCYWPDITYDVSSQDVSVHIPLHRLLSLIIQKALRRCYGESAASESADT 724
             +     L +L LC WPDI YDVSSQ +SVH+PLHRLLSL+IQKALR CYGESA+      
Sbjct:   672 S----GLRILGLCDWPDIHYDVSSQAISVHLPLHRLLSLLIQKALRICYGESASYNGVSI 727

Query:   725 GAENPLSAVSLDFFGHILGGCHPYGFSAFVMEHPLRIRVFCAQVHAGMWRRNGDAALSSC 784
               E P +    DFF  ++G  HP GFSA VMEH L+IRVFCAQV AGMW++NGD+AL SC
Sbjct:   728 SHEIPHA----DFFSSVIGDFHPCGFSALVMEHVLQIRVFCAQVIAGMWKKNGDSALVSC 783

Query:   785 EWYRAVRWSEQGLELDLFLLQCCAALAPADLYVNRIIERFGLSNYLSLNLERPSEYEPIL 844
             EWYR+VRWSEQGLELDLFLLQCCAALAPAD YV++++ RFGLS+YLSLN +  +EYEP+L
Sbjct:   784 EWYRSVRWSEQGLELDLFLLQCCAALAPADSYVDKLLSRFGLSSYLSLNPDITNEYEPVL 843

Query:   845 VQEMLTLIIQILQERRFCGLTTAESLKRELVHRLAIGDATHSQLVKSLPRDLSKFDQLQE 904
             VQEML L+IQILQERRFCGL+TAESL+RE++ +LA GD THSQLVKSLPRDLSK D+LQE
Sbjct:   844 VQEMLGLLIQILQERRFCGLSTAESLRREIIFKLATGDFTHSQLVKSLPRDLSKSDELQE 903

Query:   905 ILDAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDLQVAEERYLRFCSVSALTAQ 964
             +LD V++Y +PSG NQG YSL+ S WKELD+YHPRW SRDLQ AEER+ R+C VSALT Q
Sbjct:   904 VLDDVSVYCNPSGMNQGKYSLQSSCWKELDLYHPRWQSRDLQSAEERFSRYCGVSALTTQ 963

Query:   965 LPRWTKIYYPLESIAGIATCKVVLQVIRAVLFYAVFTDNPTDSRAPYGVXXXXXXXXXXX 1024
             LPRW  IY PL+ +A I TCK   Q+I + L+YA+ +     SRAP GV           
Sbjct:   964 LPRWRMIYPPLKGLARIGTCKATFQIISSALYYALQSGTSVKSRAPDGVLITALQLLSLS 1023

Query:  1025 XDVCFQKKKSGDQSCDIGGSTPILDFASEEIAEGLNNGAGKQSLLSLLVFLMGMYKKDGA 1084
              D+C Q+++S  Q C +  S PIL+ A  EI  G+  G  K+SLLSLLV LM     DG 
Sbjct:  1024 LDICTQQRQSNSQDCCLENSIPILELAGLEII-GIAQGTEKESLLSLLVSLMKTRMGDGR 1082

Query:  1085 DNFLEAGNCNLSSVIESLLKKFAEIDSRCMTKLQQLAPEIVSHLSQSLPRDDTSGSFSAS 1144
               F E G+CN+SS I +LLKKF+ IDS CM  LQ LAPE+V    QS    D   S S S
Sbjct:  1083 HQFPEPGSCNISSWIGNLLKKFSAIDSVCMNLLQSLAPEVVG---QS--GFDKVMSGSTS 1137

Query:  1145 DSXXXXXXXXXXXXXILEKMKAEQFKFLSSISSNIEDA-PKSAPEVTNYDAEHVSEESVQ 1203
             D              I+ KMKAEQ KFLS++SS+++D  P+S  E ++   EH SE +V+
Sbjct:  1138 DEKRKAKAKERQAA-IMAKMKAEQSKFLSTLSSSMDDDDPRSEFETSDSVMEHDSEIAVR 1196

Query:  1204 DVCALCHDPNSRTPVSYLILLQKSRLLSFVDRGSPSWDQDQWLGKECGTISANNMVNQFG 1263
             +VC+LCHDP+S+ PVS+LI LQKS+LLSFVDRG PSWDQ     K+     A +++    
Sbjct:  1197 EVCSLCHDPDSKDPVSFLIFLQKSKLLSFVDRGPPSWDQCPQSEKKISVDGAPDLLRM-- 1254

Query:  1264 TNTPSSGLGVISSCQLAQVAEEAVNQFA 1291
              N  S  L  ISS  + Q++++ +++ A
Sbjct:  1255 -NASSDSLR-ISSPLMLQLSDDTISESA 1280

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0006723 "cuticle hydrocarbon biosynthetic process" evidence=IMP

GO:0010025 "wax biosynthetic process" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0010029 "regulation of seed germination" evidence=IMP

GO:0050994 "regulation of lipid catabolic process" evidence=IMP

UNIPROTKB\|F1P5I1 UBR1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-081107-29 ubr2 "ubiquitin protein ligase E3 component n-recognin 2" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F6X9P0 UBR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RUT9 UBR2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P162 UBR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|D4A9U6 Ubr2 "Protein Ubr2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C1D2 UBR2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BIW0 UBR1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0283475 DDB_G0283475 "E3 ubiquitin-protein ligase UBR3" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00021321001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (1953 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1764
pfam02207		71	pfam02207, zf-UBR, Putative zinc finger in N-recog	3e-30
smart00396		71	smart00396, ZnF_UBR1, Putative zinc finger in N-re	5e-22

>gnl\|CDD\|216929 pfam02207, zf-UBR, Putative zinc finger in N-recognin (UBR box)	Back alignment and domain information

 Score =  114 bits (287), Expect = 3e-30
 Identities = 38/70 (54%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 117 VCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYT-GGGCCDCGDVTAW 175
           VCG V+ +    YRC TC  DPTC IC  CF    HK HD   +++  GGCCDCGD  AW
Sbjct: 2   VCGYVFKSGQPVYRCLTCSLDPTCVICYECFSISCHKGHDVVELFSKRGGCCDCGDPEAW 61

Query: 176 KREGFCSRHK 185
           K+EGFC  HK
Sbjct: 62  KKEGFCKLHK 71

This region is found in E3 ubiquitin ligases that recognise N-recognins. Length = 71

>gnl\|CDD\|197698 smart00396, ZnF_UBR1, Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1764
KOG1140		1738	consensus N-end rule pathway, recognition componen	100.0
KOG1139		784	consensus Predicted ubiquitin-protein ligase of th	99.96
KOG1140		1738	consensus N-end rule pathway, recognition componen	99.85
smart00396		71	ZnF_UBR1 Putative zinc finger in N-recognin, a rec	99.78
PF02207		71	zf-UBR: Putative zinc finger in N-recognin (UBR bo	99.73
KOG1139		784	consensus Predicted ubiquitin-protein ligase of th	98.42
PF10390		284	ELL: RNA polymerase II elongation factor ELL ; Int	97.11
KOG1777		625	consensus Putative Zn-finger protein [General func	95.3
PF13639		44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	94.23
cd00162		45	RING RING-finger (Really Interesting New Gene) dom	93.35
PF13764		802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	92.94
KOG4445		368	consensus Uncharacterized conserved protein, conta	92.28
KOG0943		3015	consensus Predicted ubiquitin-protein ligase/hyper	92.05
smart00184		39	RING Ring finger. E3 ubiquitin-protein ligase acti	87.65
COG5243		491	HRD1 HRD ubiquitin ligase complex, ER membrane com	87.55
PF12861		85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	87.13
PF14634		44	zf-RING_5: zinc-RING finger domain	86.8
PF00097		41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	86.79
KOG4796		604	consensus RNA polymerase II elongation factor [Tra	84.56
cd02335		49	ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present	83.8
cd02340		43	ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger pre	82.55
cd02249		46	ZZ Zinc finger, ZZ type. Zinc finger present in dy	82.07
KOG2752		345	consensus Uncharacterized conserved protein, conta	80.9
PLN03208		193	E3 ubiquitin-protein ligase RMA2; Provisional	80.74

>KOG1140 consensus N-end rule pathway, recognition component UBR1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=100.00  E-value=6.6e-91  Score=904.70  Aligned_cols=688  Identities=24%  Similarity=0.381  Sum_probs=494.0

Q ss_pred             ccCCCCHHHHHHHHHHHH-HhhCChhhHHHHHHHHHhhhHHHHHHHHHhccccccccCCcccceeeecccCCCchHHHHH
Q 000264          282 AEMFSSDVVVRKLHELLL-KLLGEPIFKYEFAKVFLSYYPVFVKDAIREHSDDTIKKYPLLSTFSVQIFTVPTLTPRLVK  360 (1764)
Q Consensus       282 ~~~~L~K~ar~~Lh~Lll-sLL~d~eFK~~FA~~Fvk~Y~~i~~~fL~dd~d~~~~~~siV~sLSVQLFTvPSLA~~LV~  360 (1764)
                      .+..+||..|..++.+++ .+-++.+||+.||.+|+.+|..+..+|+..|++.   ..+.| .++||+||+|++|..+++
T Consensus       371 ~d~~~~kr~r~~l~k~~~~~~~~~~~~k~~~~~~~~~~y~~~~~~~~~~d~e~---~~~vi-~~~vqf~t~~~~a~~~~~  446 (1738)
T KOG1140|consen  371 FDNRYWKRLRKDLQKVIIPTFASSNLYKPIFAQQFVEHYNSITRDFAYMDREP---DLSVI-ELSVQFFTCPSLAKNIVE  446 (1738)
T ss_pred             HHHHHHHHHHHHHhhcceeehhcchHHHHHHHHHHHHHHHHHHHHHHhhcCCc---chhhH-hheeeeecCcHHHHHhhh
Confidence            345567889999999999 6778999999999999999999999999998874   34545 999999999999999999


Q ss_pred             hhcHHHHHHHHHHHHhhhhcCCCCcceee---------cccccccchhhhhhhhhhhccchhhhHHHhhhchHHHHHHHH
Q 000264          361 EMNLLEMLLGCLREIFDSCAGDDSCLQVA---------KWANLYETTNRVIGDIRFVMSHAAVSKYATHEQLNISKAWMK  431 (1764)
Q Consensus       361 e~nLL~iLl~tl~~~~~~~~~~d~~l~~~---------~~~~~~~ry~~I~~DLrYlLsh~~Va~~l~~~~~~l~~~~l~  431 (1764)
                      ...++..+..++..++..+...++...+.         +.....+|.+..+.|+ +.+.++.+     -.++..+..++.
T Consensus       447 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~r~l~~~~~l-~~~~~~~~-----~~~~~~~~~~l~  520 (1738)
T KOG1140|consen  447 NQSFLDIVWSIIDIFKEFNKVEGGVLIDIRVQKSNLLKRYSISFRRTLYTFEDL-SKVHDPNI-----PLRPKEFISLLL  520 (1738)
T ss_pred             hccchHHHHHHHHHHHHhcccccceecceeeeechhhhHHHHHHHHHHHHHHHh-hccCCccc-----cccHHHHHHHHH
Confidence            99988888777776665444333221111         1222357778888888 77777762     357899999999


Q ss_pred             HHHHhcCCCcccccccCcceeeCCceeehhhhhHHHHHHHHhhhhhccccccccccccccccccccCCCCCccccccccc
Q 000264          432 LLTFVQGMNPQKRETGIHIREENEYMHLPLVLDHSIANIQPLLVDGAFSSAVSEETRYDFSMYKQDIGDGDSLRHAKVGR  511 (1764)
Q Consensus       432 lLsl~QGMnp~kRq~~~HVEyE~e~W~~AF~Le~~la~I~~l~~~~~~s~~~~~e~~~~~~~~~~~~~~~~~~r~~kv~r  511 (1764)
                      ++..||||.|++|+.++||++|++ |+.+|.+-.++..+++.++.||....                         ++- 
T Consensus       521 ~~~v~qg~~~lkr~~~ehv~~e~~-~~~~~~~v~~~t~~~s~i~~~~~~~e-------------------------p~~-  573 (1738)
T KOG1140|consen  521 LLKVFQGVDPLKREELEHVEVEKE-WENFFSLVEYLTAIYSMIQSLVKTSE-------------------------PVK-  573 (1738)
T ss_pred             HHHHhCCccHHHHHHhhhhcccch-HHHHHHHHHHHHHHHHHHHHHHHhcc-------------------------chh-
Confidence            999999999999999999999996 99999999999999999998886653                         000 


Q ss_pred             cccccccccccCCCcccccccccccccccccccccchhhHHHHHHHHHHHHHhhhcCCCCcccccccCCCCcccccCcch
Q 000264          512 LSQESSVCGAMGRSSLSASTLKADDVIFDAVSDVLLPHSVTWVAHECLRAMENWLGVDDRSVSVNDILSPNASRISGSNF  591 (1764)
Q Consensus       512 ~~~e~sv~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~l~~~cl~~l~~~l~~~~~~~~~~~~~s~~~~~~~~~~~  591 (1764)
                                                              ..++..|.-++.....     .                  
T Consensus       574 ----------------------------------------~~~~~~l~~~~~r~~~-----s------------------  590 (1738)
T KOG1140|consen  574 ----------------------------------------DSVYKKLLEAAIRIHP-----S------------------  590 (1738)
T ss_pred             ----------------------------------------hhHHHHHHHHHhhccc-----c------------------
Confidence                                                    0011122212211100     0                  


Q ss_pred             hhhhhhhhhccccccccccccCCccccccccccCCCccccccCccccccccCCcccccccccCcCCccccccchhccccc
Q 000264          592 VALKKTLSKIKKGKSIFSRLAGSSEVTAGIQESGDLDNATSMGKESKITISGERDTASWRSAGFNDSEMEGECATELDNL  671 (1764)
Q Consensus       592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  671 (1764)
                                         ++++                     +.   +               ...++++        
T Consensus       591 -------------------~~~~---------------------~~---l---------------~~~i~~~--------  604 (1738)
T KOG1140|consen  591 -------------------LTGS---------------------ES---L---------------TYTICGE--------  604 (1738)
T ss_pred             -------------------cCcc---------------------ce---e---------------eehhhhh--------
Confidence                               0000                     00   0               0011222        


Q ss_pred             cccccCccCceeeeccCCceeeehHHHHHHHHHHHHHHhhhccccccccccccCCCCCccccchhhhhcccCCCCCCccc
Q 000264          672 HVLSLCYWPDITYDVSSQDVSVHIPLHRLLSLIIQKALRRCYGESAASESADTGAENPLSAVSLDFFGHILGGCHPYGFS  751 (1764)
Q Consensus       672 ~~~~~~~~~~v~fdVs~~~VSfH~PLHr~Ls~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~vl~~~~~~~~~  751 (1764)
                            ...++.|+|+.++||||+|+.|+|+++++.....                   ++...+.+ ..+.+.+.   .
T Consensus       605 ------S~e~i~f~v~~~~~sv~~p~~~~l~~l~~~~~s~-------------------v~~~~d~~-~~~~~~~n---~  655 (1738)
T KOG1140|consen  605 ------SHETINFSVSQERVSVSNPVSRLLAFLIELSCSS-------------------VVSLKDAY-ERLEDCSN---F  655 (1738)
T ss_pred             ------hHhHhhhccccccceeeccHHHHhhhhhhcccch-------------------hhhcchhh-hhHhhhcc---c
Confidence                  1256899999999999999999999998532110                   11111111 11122222   2


Q ss_pred             hhhhchhHHHHHHHHHHhhCceeechHHHhHHHHHhccccccccccchhHHHHHHHHhhCChHHHHHHHHHHhccccccc
Q 000264          752 AFVMEHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELDLFLLQCCAALAPADLYVNRIIERFGLSNYLS  831 (1764)
Q Consensus       752 ~~l~E~PLR~~Vl~AQI~AGmWVRNG~si~~Q~~~Y~~~~~re~~~d~DIfLLQ~~asl~dP~~Fl~~iL~RF~L~~w~~  831 (1764)
                      .+|.|||||++|++|||.+|||||||.++.+|+++|++.+||+++|++||+++|.++++.||++|+.++++||+|.+|++
T Consensus       656 ~~i~e~~lr~~Vl~aqid~~~w~rNG~si~~q~~~y~~~~~r~~~y~~DI~~~Q~~la~~d~~~~l~~~l~r~~L~~w~~  735 (1738)
T KOG1140|consen  656 LAISEHSLRVLVLCAQIDVGFWVRNGFSILHQAAYYKNNPCRNESYDRDILMLQTGLAMEDPNRFLFTILSRFELLDWFT  735 (1738)
T ss_pred             hhhcccchhheeeeeecceeeEeecCcchhhhhHhhcCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCC-ch---hHHHHHHHHHHHHHhhccccCCC---ChHHHHHHHHHHHHhcCCCChHHHHhhCCcCCCCcchHHH
Q 000264          832 LNLERPSE-YE---PILVQEMLTLIIQILQERRFCGL---TTAESLKRELVHRLAIGDATHSQLVKSLPRDLSKFDQLQE  904 (1764)
Q Consensus       832 ~~~~~~~~-ye---~~mvEE~L~lLI~LltER~~~g~---s~~e~lRrEIIh~Lc~~p~t~SeL~~~lpe~~~~~~~fe~  904 (1764)
                      |....... ++   ..|+|+|+.+||.|++||...|+   +..+.+|+||||+||++|++||+|++.+|++++++..||.
T Consensus       736 g~~~~~~~d~~~~i~~~~ee~l~lii~ll~Er~~~~~~kv~~~d~~k~~iIh~L~~~~lays~lv~s~~~dl~~~l~~d~  815 (1738)
T KOG1140|consen  736 GEVDYQSNDTEDTISFMIEEFLALIILLLTERSYFGSSKVRRMDIIKSEIIHILCFKPLSYSQLVRKIPHDLTKTLSFDE  815 (1738)
T ss_pred             CCCccccccHHHHHHHHHHHHHHHHHHHHHheeecccccccHHHHHHHHHHHHHHhcchhHHHHHHhchhhhhhcccchH
Confidence            98654332 22   37999999999999999996554   5778999999999999999999999999999999999999


Q ss_pred             HHHHHhcccCCCCC-CcceeEehhhhhccccccccccCchhHHHHHHHHHHh--hc---cccccCC-CCCCccCCC-ccc
Q 000264          905 ILDAVAMYSHPSGF-NQGMYSLRWSYWKELDIYHPRWSSRDLQVAEERYLRF--CS---VSALTAQ-LPRWTKIYY-PLE  976 (1764)
Q Consensus       905 iL~eVA~fk~Psgl-~~G~Y~LK~e~~~e~DPy~~~y~~~d~q~Aeer~~r~--~k---~~a~~~~-~P~~~~~~~-pf~  976 (1764)
                      ++++||+|++|.|+ +.|+|+||++||+++||||+||+++++.+++..+++.  .+   ..|..++ .|++.+.+. .+.
T Consensus       816 ~~e~Va~~~~p~~~~~~gvf~lK~~~~~~~dpy~~~~s~s~q~~se~~~~k~~~~~~k~~~A~~~~i~~~~~~ll~~~~~  895 (1738)
T KOG1140|consen  816 ALEEVAVFKKPKGLADNGVFVLKESYYDEVDPYYKHLSKSEQSESEATIRKSRLAKKKDVIALVPPILPKFIKLLKKGAD  895 (1738)
T ss_pred             HHHHHHhhccCCccccceEEEechhhhhhcCchhhhhhHhHHhhhhHHHHHHHHHHhhccccccCCCcHHHHHHHHHHHH
Confidence            99999999999999 7899999999999999999999999998887655432  11   1133322 223322221 134


Q ss_pred             hhhhccccHHHHHHHHHHHHHHhccCCCCCCCCchhHHHHHHHHH-HHHHhhhhhhccCCCCCcccCCCcccccchhhHH
Q 000264          977 SIAGIATCKVVLQVIRAVLFYAVFTDNPTDSRAPYGVLLTALHLL-ALALDVCFQKKKSGDQSCDIGGSTPILDFASEEI 1055 (1764)
Q Consensus       977 ~I~~il~s~~f~~il~~vL~~al~~~~~s~s~~~E~lL~~aLHLi-~lAL~~~~~e~~~~~~s~~~~~~~p~~~~~~~~~ 1055 (1764)
                      ++.+.....+|-.||+.++.++.+..       .+.++..++|++ ++|++++..--    .       |. +..+++  
T Consensus       896 ~L~~~t~~~~~~~ii~r~~~~~~~~~-------s~~~l~~~~~~ihG~~~~~~l~~~----~-------~~-~~~~~e--  954 (1738)
T KOG1140|consen  896 ILGAAVRLTVFGLIIYRTLEHCLFME-------SSTLLSKVLHLIHGIALNEELINM----K-------FA-FTQKTE--  954 (1738)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhc----c-------cc-cccccc--
Confidence            55666666777788888887777543       488999999554 99998653211    0       00 000011  


Q ss_pred             hhccCCCCCcccHHHHHHHHHhhhhccCCccccccccCcchhHHHHHHHHHHhhhHHHHHHHhhhchhhhhcccCCCCCC
Q 000264         1056 AEGLNNGAGKQSLLSLLVFLMGMYKKDGADNFLEAGNCNLSSVIESLLKKFAEIDSRCMTKLQQLAPEIVSHLSQSLPRD 1135 (1764)
Q Consensus      1056 ~~~~s~~~~~~SLlsLL~~L~~~~~~~~~~~~~e~~~~~i~~iI~~lL~~f~~~~~~c~~~l~~~~p~~~~~~~~~~~~~ 1135 (1764)
                            .-.+.+.+.+++.+..++....+           +.+++++++.|..+..     .+...|++.. .... ...
T Consensus       955 ------~~~~e~gl~~~e~lv~~~~~~~~-----------~~~~~v~~~l~~~~~~-----~~~n~~ea~~-~~~~-~~~ 1010 (1738)
T KOG1140|consen  955 ------SIAREKGLSLYESLVRKPDSLVH-----------GKIIEVIVELFESLIK-----SRANDPEVAN-DEKD-KKE 1010 (1738)
T ss_pred             ------ccccccchhhHHHhhhcchhhcC-----------CcceeeeHHHHhhhhh-----hhcCCccccc-cccc-ccc
Confidence                  11244567777777777544322           3567888888765543     2333343321 1100 011


Q ss_pred             CCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCCCCCCCcccCCCccccccccCCCCceeccCCCC
Q 000264         1136 DTSGSFSASDSEKRKAKARERQAAILEKMKAEQFKFLSSISSNIEDAPKSAPEVTNYDAEHVSEESVQDVCALCHDPNS 1214 (1764)
Q Consensus      1136 ~~~~~~~~se~EkKKalAkeRQAKIMAQMkaQQkkFLenn~d~~dedd~~~~d~~~sd~~~~~~es~~~tCILCqE~~s 1214 (1764)
                      ..+.+..+.+.++||++|++||+|+||||+.||.+||++|.++.|+++.   ..+++...+..++  ..+|.+|+....
T Consensus      1011 ~~~~s~~~~e~~rk~rlA~~r~~k~m~k~s~qq~kfm~~~e~e~d~~~~---~~~~~~~~~~~~~--d~~~~~~~~~s~ 1084 (1738)
T KOG1140|consen 1011 KQSVSLDEEEKERKKRLARERQKKLMAKFSNQQTKFMAENEDEFDEQEN---QTPSSGSKTYEEE--DFTCALCQDNSC 1084 (1738)
T ss_pred             ccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCcccc---cCccccccchhhh--hccchhhhccch
Confidence            1122334445677888999999999999999999999999766554432   2222221122122  567888887654

>KOG1139 consensus Predicted ubiquitin-protein ligase of the N-recognin family [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1140 consensus N-end rule pathway, recognition component UBR1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>smart00396 ZnF_UBR1 Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway	Back alignment and domain information

>PF02207 zf-UBR: Putative zinc finger in N-recognin (UBR box); InterPro: IPR003126 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>KOG1139 consensus Predicted ubiquitin-protein ligase of the N-recognin family [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF10390 ELL: RNA polymerase II elongation factor ELL ; InterPro: IPR019464 ELL is a family of RNA polymerase II elongation factors	Back alignment and domain information

>KOG1777 consensus Putative Zn-finger protein [General function prediction only]	Back alignment and domain information

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A	Back alignment and domain information

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Back alignment and domain information

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	Back alignment and domain information

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]	Back alignment and domain information

>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>smart00184 RING Ring finger	Back alignment and domain information

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger	Back alignment and domain information

>PF14634 zf-RING_5: zinc-RING finger domain	Back alignment and domain information

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>KOG4796 consensus RNA polymerase II elongation factor [Transcription]	Back alignment and domain information

>cd02335 ZZ_ADA2 Zinc finger, ZZ type	Back alignment and domain information

>cd02340 ZZ_NBR1_like Zinc finger, ZZ type	Back alignment and domain information

>cd02249 ZZ Zinc finger, ZZ type	Back alignment and domain information

>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]	Back alignment and domain information

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1764
3ny1_A		77	Structure Of The Ubr-Box Of The Ubr1 Ubiquitin Liga		2e-08
3ny2_A		75	Structure Of The Ubr-Box Of Ubr2 Ubiquitin Ligase L		3e-07

>pdb|3NY1|A Chain A, Structure Of The Ubr-Box Of The Ubr1 Ubiquitin Ligase Length = 77

Back alignment and structure

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 117 VCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSI-IYTXXXXXXXXXVTAW 175
           +CG V+ + +  Y CR C  DPTC +C+ CFQ+  HK H Y +   T           AW
Sbjct: 7   LCGRVFKSGETTYSCRDCAIDPTCVLCMDCFQDSVHKNHRYKMHTSTGGGFCDCGDTEAW 66
Query: 176 KREGFCSRHK 185
           K   FC  H+
Sbjct: 67  KTGPFCVNHE 76

PyMOL of 3ny1

>pdb|3NY2|A Chain A, Structure Of The Ubr-Box Of Ubr2 Ubiquitin Ligase Length = 75

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1764
3ny3_A		75	E3 ubiquitin-protein ligase UBR2; zinc finger-like	6e-34
3nis_A		82	E3 ubiquitin-protein ligase UBR1; E3 ubiquitin lig	3e-32
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-16
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-15
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
2doa_A		104	RNA polymerase II elongation factor ELL; C19ORF17,	2e-06
2e5n_A		100	RNA polymerase II elongation factor ELL2; ELL_N2 d	5e-06

>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A Length = 75	Back alignment and structure

 Score =  124 bits (313), Expect = 6e-34
 Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 113 GQRG-VCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYT-GGGCCDCG 170
           G  G +CG V+   +  Y CR C  DPTC +C+ CF    H++H Y +  + GGG CDCG
Sbjct: 1   GPLGSLCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCG 60

Query: 171 DVTAWKREGFCSRHK 185
           D  AWK   +C +H+
Sbjct: 61  DTEAWKEGPYCQKHE 75

PyMOL of 3ny3

>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A Length = 82	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81 Length = 104	Back alignment and structure

>2e5n_A RNA polymerase II elongation factor ELL2; ELL_N2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1764
d2doaa1		91	a.4.5.81 (A:8-98) RNA polymerase II elongation fac	2e-21

>d2doaa1 a.4.5.81 (A:8-98) RNA polymerase II elongation factor ELL {Human (Homo sapiens) [TaxId: 9606]} Length = 91	Back information, alignment and structure


class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ELL N2 domain-like
domain: RNA polymerase II elongation factor ELL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.9 bits (218), Expect = 2e-21
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 7/90 (7%)

Query: 868 ESLKRELVHRLAIGDATHSQLVKSLPRDLSKF---DQLQEILDAVAMYSHPSGFNQGMYS 924
              +  ++H LA+     ++L+  L +D       D L  +L  VA  S       G  +
Sbjct: 4   RPFRDRVLHLLALRPYRKAELLLRLQKDGLTQADKDALDGLLQQVANMSAK----DGTCT 59

Query: 925 LRWSYWKELDIYHPRWSSRDLQVAEERYLR 954
           L+   +K++    P +S  D Q+ +   +R
Sbjct: 60  LQDCMYKDVQKDWPGYSEGDQQLLKRVLVR 89

PyMOL of d2doaa1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1764
d2doaa1		91	RNA polymerase II elongation factor ELL {Human (Ho	99.82
d1v87a_		114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	95.59
d1g25a_		65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	89.24
d3dplr1		88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	87.72
d1ur6b_		52	Not-4 N-terminal RING finger domain {Human (Homo s	87.13
d1fbva4		79	CBL {Human (Homo sapiens) [TaxId: 9606]}	85.29
d2bbya_		69	DNA-binding domain from rap30 {Human (Homo sapiens	83.77
d1vyxa_		60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	81.91
d1chca_		68	Immediate early protein, IEEHV {Equine herpesvirus	80.84
d1jm7a_		103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	80.46

>d2doaa1 a.4.5.81 (A:8-98) RNA polymerase II elongation factor ELL {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ELL N2 domain-like
domain: RNA polymerase II elongation factor ELL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.7e-21  Score=156.46  Aligned_cols=83  Identities=24%  Similarity=0.334  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHCCCCCCC---CCHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHCCCCCCCCCCCCHHH
Q ss_conf             999999999802898869998619968789---20299999987044599988864057403121004655654482369
Q 000264          869 SLKRELVHRLAIGDATHSQLVKSLPRDLSK---FDQLQEILDAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDL  945 (1764)
Q Consensus       869 ~lRrEIIh~Lc~~p~ThSeL~k~LPe~~~~---~~~fe~IL~eVA~fk~Psg~~~G~Y~LK~E~~~e~DPY~~hy~~~d~  945 (1764)
                      .+|+||||.||++|++||+|++.||++...   ...|+.||++||+|++|    .|+|+||++||+|||||||||+++|+
T Consensus         5 ~lR~~iIH~La~~p~~~sEL~~~l~~d~~~~~d~~~l~~iL~~Va~~~~~----~g~Y~LK~~~~~Evdp~~~~Ys~~dr   80 (91)
T d2doaa1           5 PFRDRVLHLLALRPYRKAELLLRLQKDGLTQADKDALDGLLQQVANMSAK----DGTCTLQDCMYKDVQKDWPGYSEGDQ   80 (91)
T ss_dssp             CHHHHHHHHHHHSCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHSSEECSS----SCEEECCSSGGGGCCSCCTTCCSHHH
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHEECCC----CCEEEEHHHHHHHCCCCCCCCCHHHH
T ss_conf             26999999998288988999999886235510488999999998414578----86674279999671766789899999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999974
Q 000264          946 QVAEERYLRF  955 (1764)
Q Consensus       946 q~Aeer~~k~  955 (1764)
                      |.+++.+.|.
T Consensus        81 q~~~~~l~rk   90 (91)
T d2doaa1          81 QLLKRVLVRK   90 (91)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
T ss_conf             9999999851

PyMOL of d2doaa1

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bbya_ a.4.5.15 (A:) DNA-binding domain from rap30 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}	Back information, alignment and structure

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}	Back information, alignment and structure

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure