Citrus Sinensis ID: 000266

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------1590------1600------1610------1620------1630------1640------1650------1660------1670------1680------1690------1700------1710------1720------1730------1740------1750------1760
MSATASSSFVQLRANSSLTSLSRKSGYPQSNIVSPLSSGGRAKAARCAAAKKSTVLERRFFGNQLRLAGSERVHLWRSDGPGKSPKLRVVVRSALSGVPEKPLGLYDPKFDKDSCGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILVALPHDFFKEAAKNVGFQLPPPGEYAVGMFFLPQSENRREESKKVFTKVAESLGHTVLGWRAVPTDNSGLGNSALQTEPVVEQVFLTPSLRSKVDFENQMYILRRVSMAAIRESLNLEHGGAKDFYICSLSSRTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVDFEKRIVVDDEALKQQYSLARPYGEWLQRQKIELKNIVESIHKSERVSPGIAGVLPASNDDDNMENMGIHGLLAPLKAFGYTVEALEMLMLPMAKDGTEALGSMGNDAPLAVMSNREKLTFEYFKQMFAQVTNPPIDPIREKIVTSMECMIGPEGVLTETTEEQCHRLSLKGPLLSIEEMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRVAVSSLLAVGAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAICPYLATEAIWRLQVDGKIPPKASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEALGLSSEVIEKCFAGTPSRVDGATFEVLASDALHLHELAFPTRILPPGSAEAVALPNPGDYHWRKGGEIHLNDPLAIAKLQEAARGNSVAAYKEYSKRIQELNKTCNLRGLLKFKEADVKIPLEEVEPASEIVKRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVDKEVTKTNEKLENIDLSLLLRPAADLRPEAAQYCVQKQDHGLDMALDQKLIKLSKAALEKALPVYIETPVCNVNRAVGTMLSHEVTKRYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCVRNSGARAVVEGVGDHGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYVLDVDGKFRSRCNPELVDLDKVEEEEDIITLRMMIQQHQRYTNSQLAKEVLADFENLLPKFIKVFPRDYKRVLASMKVAAAQEAAEDAVKDAEEPDEADFKEKDAFEELKKMAIASLNEKSNQEAEQVEPTKRPSRVADAVKHRGFIAYEREGVQYRDPNIRMNDWKEVMEESKPGPLLKTQSARCMDCGTPFCHQVCIAPF
ccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccCEEEEEccccccHHHHHHHHHHHHccccccccccccccccccEEcccccHHHHHHHHHHccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHcccEEEEEEccccccccccHHHHcccccEEEEEECcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEcccccccEEEcccccccccHHccccccccccccEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHcccccccccccccHHHHHHHHHHcccccccccccEEccccccEEEEEccccccccccEEEEcccEEEEEEccccccccccccccccccccccEEEEEccccEEcccHHHHHHHHHcccHHHHHHHccccccccHHHcccccccccccccccccccccccccccccccHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHcccccccccccccccccHHcccccccccccccccccccccEEEEccccccHHHHHHHHHcccccccEEEEEEEECccccHHHHHHHHHHHHHHHHHHHHcccEEEEEccccccccccccHHHHHHHHHHHHHHHccccccEEEEEEcccccHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccccHHHHHHcccHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccEEcccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHccccccccHHHHccccHHHHHHccccccccccccccccccHHHHHcccccccccccccccccccccHHHHHHHHHHHcccccccccEEEEEccccccHHccccccccccEEEEcccccccccccccccccccccccccHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccccccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEcEEccccHHHHHHHHHHHHHHcccccccccEEEEEEEccccccccccccccEEEEEEcccccccccccccEEEEEccccccccccccEEEccccccccccccEEEccccccccHHHccccEEEEEcccccccccccccEEEEEccccccccccccccEEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEccccccccccHHHcccHHHHHHcccccccccHccccccccccccccccccccc
****************************************************STVLERRFFGNQLRLAGSERVHLWR*****************LSGVPEKPLGLYDPKFDKDSCGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILVALPHDFFKEAAKNVGFQLPPPGEYAVGMFFLPQSENRREESKKVFTKVAESLGHTVLGWRAVPTDNSGLGNSALQTEPVVEQVFLTPSLRSKVDFENQMYILRRVSMAAIRESLNLEHGGAKDFYICSLSSRTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVDFEKRIVVDDEALKQQYSLARPYGEWLQRQKIELKNIVESIHKSERVSPGIAGVLP*********NMGIHGLLAPLKAFGYTVEALEMLMLPMAKDGTEALGSMGNDAPLAVMSNREKLTFEYFKQMFAQVTNPPIDPIREKIVTSMECMIGPEGVLTETTEEQCHRLSLKGPLLSIEEMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRVAVSSLLAVGAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAICPYLATEAIWRLQVDGKIPPKASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEALGLSSEVIEKCFAGTPSRVDGATFEVLASDALHLHELAFPTRILPPGSAEAVALPNPGDYHWRKGGEIHLNDPLAIAKLQEAARGNSVAAYKEYSKRIQELNKTCNLRGLLKFKEADVKIPLEEVEPASEIVKRFCTGAMSYGSISLEAHTTLATAMNKIGGKS******EQPSRMEPLSD*SMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVDKEVTKTNEKLENIDLSLLLRPAADLRPEAAQYCVQKQDHGLDMALDQKLIKLSKAALEKALPVYIETPVCNVNRAVGTMLSHEVTKRYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCVRNSGARAVVEGVGDHGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYVLDVDGKFRSRCNPELVDLDKVEEEEDIITLRMMIQQHQRYTNSQLAKEVLADFENLLPKFIKVFPRDYKRVLASMKV**************************************************************VKHRGFIAYEREGVQYRDPNIRMNDWKEVMEESKPGPLLKTQSARCMDCGTPFCHQVCIAPF
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MSATASSSFVQLRANSSLTSLSRKSGYPQSNIVSPLSSGGRAKAARCAAAKKSTVLERRFFGNQLRLAGSERVHLWRSDGPGKSPKLRVVVRSALSGVPEKPLGLYDPKFDKDSCGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILVALPHDFFKEAAKNVGFQLPPPGEYAVGMFFLPQSENRREESKKVFTKVAESLGHTVLGWRAVPTDNSGLGNSALQTEPVVEQVFLTPSLRSKVDFENQMYILRRVSMAAIRESLNLEHGGAKDFYICSLSSRTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVDFEKRIVVDDEALKQQYSLARPYGEWLQRQKIELKNIVESIHKSERVSPGIAGVLPASNDDDNMENMGIHGLLAPLKAFGYTVEALEMLMLPMAKDGTEALGSMGNDAPLAVMSNREKLTFEYFKQMFAQVTNPPIDPIREKIVTSMECMIGPEGVLTETTEEQCHRLSLKGPLLSIEEMEAIKRMNYRGWRSKVLDITYSKDHGxxxxxxxxxxxxxxxxxxxxxGYTLLVLSDRAFSSKRVAVSSLLAVGAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAICPYLATEAIWRLQVDGKIPPKASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEALGLSSEVIEKCFAGTPSRVDGATFEVLASDALHLHELAFPTRILPPGSAEAVALPNPGDYHWRKGGEIHLNDPLAIAKLQEAARGNSVAAYKEYSKRIQELNKTCNLRGLLKFKEADVKIPLEEVEPASEIVKRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVDKEVTKTNEKLENIDLSLLLRPAADLRPEAAQYCVQKQDHGLDMALDQKLIKLSKAALEKALPVYIETPVCNVNRAVGTMLSHEVTKRYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCVRNSGARAVVEGVGDHGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYVLDVDGKFRSRCNPELVDLDKVEEEEDIITLRMMIQQHQRYTNSQLAKEVLADFENLLPKFIKVFPRDYKRVLASMKVAAAQEAAEDAVKDAEEPDEADFKEKDAFEELKKMAIASLNEKSNQEAEQVEPTKRPSRVADAVKHRGFIAYEREGVQYRDPNIRMNDWKEVMEESKPGPLLKTQSARCMDCGTPFCHQVCIAPF

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Glutamate synthase 1 [NADH], chloroplastic Involved in glutamate biosynthesis. Required for non-photorespiratory ammonium assimilation. Probably involved in primary ammonium assimilation in roots.probableQ9LV03
Glutamate synthase 1 [NADH], chloroplastic Involved in glutamate biosynthesis and plays a major role in the primary ammonium ions assimilation in seedling roots. May be involved in the reutilization of glutamine in developing organs. Plays a role in the development of tillers.probableQ0JKD0
Glutamate synthase [NADPH] large chain probableP96218

Prediction of Enzyme Commission Number ?

EC Number ?Description ?Confidence Level ?
1.-.-.-Oxidoreductases.probable
1.4.-.-Acting on the CH-NH(2) group of donors.probable
1.4.1.-With NAD(+) or NADP(+) as acceptor.probable
1.4.1.14Glutamate synthase (NADH).probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1VCF, chain A
Confidence level:probable
Coverage over the Query: 1011-1059,1071-1249,1275-1328
View the alignment between query and template
View the model in PyMOL
Template: 2VDC, chain G
Confidence level:probable
Coverage over the Query: 1723-1756
View the alignment between query and template
View the model in PyMOL
Template: 3LVG, chain D
Confidence level:probable
Coverage over the Query: 1638-1710
View the alignment between query and template
View the model in PyMOL

Templates for Structure Prediction

ID ?Alignment Graph ?Confidence Level ? View Alignment and Template ?
Query
1ea0, chain Avery confident Alignment | Template Structure
1llw, chain Avery confident Alignment | Template Structure