Citrus Sinensis ID: 000266
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1760 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LV03 | 2208 | Glutamate synthase 1 [NAD | yes | no | 0.993 | 0.792 | 0.840 | 0.0 | |
| Q03460 | 2194 | Glutamate synthase [NADH] | N/A | no | 0.974 | 0.781 | 0.840 | 0.0 | |
| Q0JKD0 | 2167 | Glutamate synthase 1 [NAD | yes | no | 0.928 | 0.754 | 0.799 | 0.0 | |
| Q0DG35 | 2188 | Glutamate synthase 2 [NAD | no | no | 0.935 | 0.752 | 0.779 | 0.0 | |
| Q9C102 | 2111 | Putative glutamate syntha | yes | no | 0.910 | 0.759 | 0.545 | 0.0 | |
| P55037 | 1550 | Ferredoxin-dependent glut | N/A | no | 0.855 | 0.970 | 0.534 | 0.0 | |
| Q12680 | 2145 | Glutamate synthase [NADH] | yes | no | 0.918 | 0.753 | 0.497 | 0.0 | |
| P39812 | 1520 | Glutamate synthase [NADPH | yes | no | 0.844 | 0.977 | 0.495 | 0.0 | |
| P96218 | 1527 | Glutamate synthase [NADPH | yes | no | 0.848 | 0.978 | 0.505 | 0.0 | |
| Q05755 | 1515 | Glutamate synthase [NADPH | yes | no | 0.831 | 0.965 | 0.441 | 0.0 |
| >sp|Q9LV03|GLUT1_ARATH Glutamate synthase 1 [NADH], chloroplastic OS=Arabidopsis thaliana GN=GLT1 PE=1 SV=2 | Back alignment and function desciption |
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Score = 3059 bits (7930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1480/1760 (84%), Positives = 1613/1760 (91%), Gaps = 11/1760 (0%)
Query: 1 MSATASSSFVQLRANSSLTSLSRKSGYPQSNIVSPLS-----SGGRAKAARCAAAKKSTV 55
MSA +SSS + LR N L SL +S +++ S L+ S R+ ARC+ KK +
Sbjct: 1 MSAASSSSVLHLRTNQQLLSL--RSLKNSTSVASQLAVTSGVSRRRSCTARCSV-KKPVI 57
Query: 56 LERRFFGNQLRLAGSERVHLWRSDGPGKSPKLRVVVRSALSGVPEKPLGLYDPKFDKDSC 115
E F G ++R +GSE + WRSDGPG+S KLR VV+S+ S VPEKPLGLYDP +DKDSC
Sbjct: 58 PESPFLGTRVRRSGSETLQFWRSDGPGRSAKLRTVVKSSFSAVPEKPLGLYDPSYDKDSC 117
Query: 116 GVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILVALPHDFFKEAAKN 175
GVGFVAELSGE++RKT+TD+LEML+RM HRGACGCE+NTGDGAGILV LPHDF+ EAA
Sbjct: 118 GVGFVAELSGETTRKTVTDSLEMLIRMTHRGACGCESNTGDGAGILVGLPHDFYAEAATE 177
Query: 176 VGFQLPPPGEYAVGMFFLPQSENRREESKKVFTKVAESLGHTVLGWRAVPTDNSGLGNSA 235
+GF LP G YAVGMFFLP E+RREESK VFTKVAESLGH+VLGWR VPTDNSGLGNSA
Sbjct: 178 LGFVLPSAGNYAVGMFFLPTVESRREESKNVFTKVAESLGHSVLGWRLVPTDNSGLGNSA 237
Query: 236 LQTEPVVEQVFLTPSLRSKVDFENQMYILRRVSMAAIRESLNLEHGGAKDFYICSLSSRT 295
LQTEP++ QVFLTP+ +SK DFE QMYILRRVSM AIR +LNL+HG KDFYICSLSSRT
Sbjct: 238 LQTEPIIAQVFLTPTTKSKADFEQQMYILRRVSMVAIRAALNLQHGAMKDFYICSLSSRT 297
Query: 296 VVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRILGHNGEIN 355
+VYKGQLKP Q+KDYYYADLG+ERFTSYMAL+HSRFSTNTFPSWDRAQPMR+LGHNGEIN
Sbjct: 298 IVYKGQLKPDQLKDYYYADLGSERFTSYMALVHSRFSTNTFPSWDRAQPMRVLGHNGEIN 357
Query: 356 TLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLP 415
TLRGNVNWM+AREGLLKC ELGLSK E+KKLLPIVDVSSSDSGAFDGVLELLVRAGRSLP
Sbjct: 358 TLRGNVNWMRAREGLLKCNELGLSKKELKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLP 417
Query: 416 EAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRP 475
EAVMMMIPEAWQNDKN+DP RK YEY SALMEPWDGPALISFTDGRYLGATLDRNGLRP
Sbjct: 418 EAVMMMIPEAWQNDKNIDPSRKEFYEYLSALMEPWDGPALISFTDGRYLGATLDRNGLRP 477
Query: 476 GRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVDFEKRIVVDDEALKQQYSL 535
GRFYITHSGRVIMASEVGVVD+PPEDV+RKGRLNPGMMLLVDFEK IVVDD+ALKQQYSL
Sbjct: 478 GRFYITHSGRVIMASEVGVVDVPPEDVMRKGRLNPGMMLLVDFEKHIVVDDDALKQQYSL 537
Query: 536 ARPYGEWLQRQKIELKNIVESIHKSERVSPGIAGVLPASNDDDNMENMGIHGLLAPLKAF 595
ARPYGEWL+RQKIELK+I+ES+ ++ER++P I+GV+PASNDDD+ME+MGIHGLL+PLKAF
Sbjct: 538 ARPYGEWLKRQKIELKDIIESVPEAERIAPSISGVVPASNDDDSMESMGIHGLLSPLKAF 597
Query: 596 GYTVEALEMLMLPMAKDGTEALGSMGNDAPLAVMSNREKLTFEYFKQMFAQVTNPPIDPI 655
GYTVEALEML+LPMAKDG+EALGSMGND PLAVMSNREKL FEYFKQMFAQVTNPPIDPI
Sbjct: 598 GYTVEALEMLLLPMAKDGSEALGSMGNDTPLAVMSNREKLCFEYFKQMFAQVTNPPIDPI 657
Query: 656 REKIVTSMECMIGPEGVLTETTEEQCHRLSLKGPLLSIEEMEAIKRMNYRGWRSKVLDIT 715
REKIVTSMECMIGPEG LTETTEEQCHRLSLKGPLL IEEMEAIK+MNYRGWR+KVLDIT
Sbjct: 658 REKIVTSMECMIGPEGDLTETTEEQCHRLSLKGPLLKIEEMEAIKKMNYRGWRTKVLDIT 717
Query: 716 YSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRVAVSSLLAVGAVHHHLV 775
Y+K+ G +GLEETLDRIC EA +AIKEGYTLLVLSDRAFS+ RVAVSSL+AVGAVHHHLV
Sbjct: 718 YAKERGTKGLEETLDRICDEANEAIKEGYTLLVLSDRAFSATRVAVSSLMAVGAVHHHLV 777
Query: 776 KNLERTRIGLIVESAEPREVHHFCTLVGFGADAICPYLATEAIWRLQVDGKIPPKASGEF 835
K L RT++GL+VESAEPREVHHFCTLVGFGADAICPYLA EA++RLQVDGKIPPK++GEF
Sbjct: 778 KTLARTQVGLVVESAEPREVHHFCTLVGFGADAICPYLAVEAVYRLQVDGKIPPKSNGEF 837
Query: 836 HSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEALGLSSEVIEKCFAGTPSRV 895
HSK+ELVKKY+KASNYGMMKVLAKMGISTLASYKGAQIFEALGLSSEVI+KCFAGTPSRV
Sbjct: 838 HSKEELVKKYYKASNYGMMKVLAKMGISTLASYKGAQIFEALGLSSEVIQKCFAGTPSRV 897
Query: 896 DGATFEVLASDALHLHELAFPTRILPPGSAEAVALPNPGDYHWRKGGEIHLNDPLAIAKL 955
+GATFE+LA D L LHELAFPTR PGSAEA AL NPG+YHWRK GEIHLNDPLAIAKL
Sbjct: 898 EGATFEMLARDGLQLHELAFPTRGYAPGSAEASALTNPGNYHWRKNGEIHLNDPLAIAKL 957
Query: 956 QEAARGNSVAAYKEYSKRIQELNKTCNLRGLLKFKEADVKIPLEEVEPASEIVKRFCTGA 1015
QEAAR NSVAAYKEYSKRI ELNK NLRGL+KFK+ADVKIPL+EVEPASEIVKRFCTGA
Sbjct: 958 QEAARTNSVAAYKEYSKRINELNKQSNLRGLMKFKDADVKIPLDEVEPASEIVKRFCTGA 1017
Query: 1016 MSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRSAIKQVASGRF 1075
MSYGSISLEAHTTLA AMNK+GGKSNTGEGGE PSRMEPL+DGS NPKRS+IKQ+ASGRF
Sbjct: 1018 MSYGSISLEAHTTLAMAMNKLGGKSNTGEGGELPSRMEPLADGSRNPKRSSIKQIASGRF 1077
Query: 1076 GVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHHDIY 1135
GVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIA+TRNSTAGVGLISPPPHHDIY
Sbjct: 1078 GVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAITRNSTAGVGLISPPPHHDIY 1137
Query: 1136 SIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRW 1195
SIEDLAQLI+DLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLI+GHDGGTGASRW
Sbjct: 1138 SIEDLAQLIHDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLIAGHDGGTGASRW 1197
Query: 1196 TGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255
TGIKNAGLPWELGLAETHQTLVANDLRGRT+LQTDGQLKTGRDVA+AALLGAEEFGFSTA
Sbjct: 1198 TGIKNAGLPWELGLAETHQTLVANDLRGRTVLQTDGQLKTGRDVAVAALLGAEEFGFSTA 1257
Query: 1256 PLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGF 1315
PLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEE+REIMS LGF
Sbjct: 1258 PLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEEVREIMSGLGF 1317
Query: 1316 RTITEMIGRSDMLEVDKEVTKTNEKLENIDLSLLLRPAADLRPEAAQYCVQKQDHGLDMA 1375
RT+TEMIGR+DMLE+D+EV K N+KLENIDLSLLLRPAA++RP AAQYCVQKQDHGLDMA
Sbjct: 1318 RTVTEMIGRADMLELDREVVKNNDKLENIDLSLLLRPAAEIRPGAAQYCVQKQDHGLDMA 1377
Query: 1376 LDQKLIKLSKAALEKALPVYIETPVCNVNRAVGTMLSHEVTKRYHLVGLPADTIHIKLTG 1435
LDQ+LI LSK+ALEK+LPVYIETP+CNVNRAVGTMLSHEVTKRYHL GLP DTIHIK TG
Sbjct: 1378 LDQELIALSKSALEKSLPVYIETPICNVNRAVGTMLSHEVTKRYHLTGLPKDTIHIKFTG 1437
Query: 1436 SAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYG 1495
SAGQS+GAFLCPGI+LELEGDSNDYVGKGLSGGK+V YPPKGS FDPK NIVIGNVALYG
Sbjct: 1438 SAGQSLGAFLCPGIMLELEGDSNDYVGKGLSGGKVVVYPPKGSSFDPKENIVIGNVALYG 1497
Query: 1496 ATSGEAYFNGMAAERFCVRNSGARAVVEGVGDHGCEYMTGGTVVVLGKTGRNFAAGMSGG 1555
ATSGEAYFNGMAAERF VRNSGA+AVVEG+GDHGCEYMTGGTVVVLGKTGRNFAAGMSGG
Sbjct: 1498 ATSGEAYFNGMAAERFSVRNSGAKAVVEGLGDHGCEYMTGGTVVVLGKTGRNFAAGMSGG 1557
Query: 1556 IAYVLDVDGKFRSRCNPELVDLDKVEEEEDIITLRMMIQQHQRYTNSQLAKEVLADFENL 1615
IAYVLDVDGKF +RCN ELVDLDKVE+EED +TL+MMIQQHQR+TNSQLA+EVLADFENL
Sbjct: 1558 IAYVLDVDGKFNTRCNLELVDLDKVEDEEDKMTLKMMIQQHQRHTNSQLAQEVLADFENL 1617
Query: 1616 LPKFIKVFPRDYKRVLASMK-VAAAQEAAEDAVKDAEEPDEADFKEKDAFEELKKMAIAS 1674
LPKFIKVFPRDYKRVL++MK +++A E A ++A+E +E + +EKDAF ELK MA AS
Sbjct: 1618 LPKFIKVFPRDYKRVLSAMKHEEVSKQAIERASEEADETEEKELEEKDAFAELKNMAAAS 1677
Query: 1675 LNEKSNQEAEQVEPTKRPSRVADAVKHRGFIAYEREGVQYRDPNIRMNDWKEVMEESKPG 1734
K V RPS+V +AVK+ GFIAYEREGV+YRDPN+R+NDW EVMEESKPG
Sbjct: 1678 --SKEEMSGNGVAAEARPSKVDNAVKNGGFIAYEREGVKYRDPNVRLNDWNEVMEESKPG 1735
Query: 1735 PLLKTQSARCMDCGTPFCHQ 1754
PLL TQSARCMDCGTPFCHQ
Sbjct: 1736 PLLTTQSARCMDCGTPFCHQ 1755
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Involved in glutamate biosynthesis. Required for non-photorespiratory ammonium assimilation. Probably involved in primary ammonium assimilation in roots. Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 4 |
| >sp|Q03460|GLSN_MEDSA Glutamate synthase [NADH], amyloplastic OS=Medicago sativa PE=1 SV=1 | Back alignment and function description |
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Score = 3033 bits (7864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1455/1732 (84%), Positives = 1575/1732 (90%), Gaps = 17/1732 (0%)
Query: 28 PQSNIVSPLSSGGR--AKAARCAAAKKSTVLERRFFGNQLRLAGS-ERVHLWRSDGPGKS 84
PQ N +S ++ R A+ RC+A + V +R+ G +LR G ER+ LW S G G+
Sbjct: 15 PQINAISNPNARLRPLARVTRCSA---TCVERKRWLGTKLRSGGGLERIQLWESGGLGRL 71
Query: 85 PKLRVVVRSALSGVPEKPLGLYDPKFDKDSCGVGFVAELSGESSRKTITDALEMLVRMAH 144
PKLRV V+S+ S VP+KP+GLYDP FDKDSCGVGFVAEL+G+SSRKT+TDALEMLVRM H
Sbjct: 72 PKLRVAVKSSFSAVPDKPMGLYDPAFDKDSCGVGFVAELNGQSSRKTVTDALEMLVRMTH 131
Query: 145 RGACGCETNTGDGAGILVALPHDFFKEAAKNVGFQLPPPGEYAVGMFFLPQSENRREESK 204
RGACGCE NTGDGAGILVALPH F++E V FQLPP G YAVGMFFLP+S++RR+ESK
Sbjct: 132 RGACGCEANTGDGAGILVALPHGFYQEV---VDFQLPPQGNYAVGMFFLPKSDSRRKESK 188
Query: 205 KVFTKVAESLGHTVLGWRAVPTDNSGLGNSALQTEPVVEQVFLTPSLRSKVDFENQMYIL 264
+FTKVAESLGH VLGWR+VPTDN+GLG SA TEPV+EQVFLTPS SKVD E QMYIL
Sbjct: 189 NIFTKVAESLGHKVLGWRSVPTDNTGLGKSAQLTEPVIEQVFLTPSSDSKVDLEKQMYIL 248
Query: 265 RRVSMAAIRESLNLEHGGAKDFYICSLSSRTVVYKGQLKPIQMKDYYYADLGNERFTSYM 324
R++SM +I +LNL+ G DFYICSLSSRTV+YKGQL P Q+ +YYYADLGNERFTSYM
Sbjct: 249 RKLSMVSITSALNLQSDGITDFYICSLSSRTVIYKGQLTPAQLGEYYYADLGNERFTSYM 308
Query: 325 ALIHSRFSTNTFPSWDRAQPMRILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMK 384
ALIHSRFSTNTFPSWDRAQP R+LGHNGEINTLRGNVNW+KAREGLLKCKELGLS++++K
Sbjct: 309 ALIHSRFSTNTFPSWDRAQPFRVLGHNGEINTLRGNVNWIKAREGLLKCKELGLSENDLK 368
Query: 385 KLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFS 444
K LPIVD +SSDSG FDGVLE L+ +G+SLPEAVMMMIPEAWQNDKNMDPQRKA YEY+S
Sbjct: 369 KFLPIVDANSSDSGCFDGVLEFLLHSGKSLPEAVMMMIPEAWQNDKNMDPQRKAFYEYYS 428
Query: 445 ALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLR 504
ALMEPWDGPALISFTDG YLGATLDRNGLRPGRFY+THSGRVIMASEVGVVDIPPEDV R
Sbjct: 429 ALMEPWDGPALISFTDGHYLGATLDRNGLRPGRFYVTHSGRVIMASEVGVVDIPPEDVCR 488
Query: 505 KGRLNPGMMLLVDFEKRIVVDDEALKQQYSLARPYGEWLQRQKIELKNIVESIHKSERVS 564
KGRLNPGMMLLVDFEK+IVV+D+ALK+QYSLARPYG+WL++QKIELK+I++S+H+S+ V
Sbjct: 489 KGRLNPGMMLLVDFEKQIVVNDDALKEQYSLARPYGDWLEKQKIELKDIIDSVHESDIVP 548
Query: 565 PGIAGVLPASNDDDNMENMGIHGLLAPLKAFGYTVEALEMLMLPMAKDGTEALGSMGNDA 624
P I+GV P SNDD +MENMGI GLLAPLKAFGY+VE+LE+L+LPMAKDG EALGSMGND
Sbjct: 549 PTISGVPPLSNDDVDMENMGIQGLLAPLKAFGYSVESLEILLLPMAKDGVEALGSMGNDT 608
Query: 625 PLAVMSNREKLTFEYFKQMFAQVTNPPIDPIREKIVTSMECMIGPEGVLTETTEEQCHRL 684
PLAVMSNREKLTFEYFKQMFAQVTNPPIDPIREKIVTSM CM+GPEG LTETTEEQCHRL
Sbjct: 609 PLAVMSNREKLTFEYFKQMFAQVTNPPIDPIREKIVTSMRCMVGPEGDLTETTEEQCHRL 668
Query: 685 SLKGPLLSIEEMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGY 744
SLKGPLLS +EMEAIK+MNYRGWRSKV+DITYSK+ G +GLEE LDRIC EA +AI EGY
Sbjct: 669 SLKGPLLSTKEMEAIKKMNYRGWRSKVIDITYSKERGTKGLEEALDRICTEAHNAISEGY 728
Query: 745 TLLVLSDRAFSSKRVAVSSLLAVGAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGF 804
T LVLSDRAFS K VAVSSLLAVGAVH HLVK LERTR+ L+VESAEPREVHHFCTLVGF
Sbjct: 729 TTLVLSDRAFSKKHVAVSSLLAVGAVHQHLVKTLERTRVALMVESAEPREVHHFCTLVGF 788
Query: 805 GADAICPYLATEAIWRLQVDGKIPPKASGEFHSKDELVKKYFKASNYGMMKVLAKMGIST 864
GADAICPYLA EAIWRLQVDGKIPPKASG+F+SKDELVKKYFKAS YGMMKVLAKMGIST
Sbjct: 789 GADAICPYLAIEAIWRLQVDGKIPPKASGDFNSKDELVKKYFKASTYGMMKVLAKMGIST 848
Query: 865 LASYKGAQIFEALGLSSEVIEKCFAGTPSRVDGATFEVLASDALHLHELAFPTRILPPGS 924
LASYKGAQIFEALGLSSEVIEKCFAGTPSRV+GATFE+LA DALHLHELAFP+RI PGS
Sbjct: 849 LASYKGAQIFEALGLSSEVIEKCFAGTPSRVEGATFEMLAQDALHLHELAFPSRIFSPGS 908
Query: 925 AEAVALPNPGDYHWRKGGEIHLNDPLAIAKLQEAARGNSVAAYKEYSKRIQELNKTCNLR 984
AEAVALPNPGDYHWRKGGE+HLNDPLAIAKLQEAAR NSV AYK+YSK I ELNK CNLR
Sbjct: 909 AEAVALPNPGDYHWRKGGEVHLNDPLAIAKLQEAARTNSVDAYKQYSKTIHELNKACNLR 968
Query: 985 GLLKFKEADVKIPLEEVEPASEIVKRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGE 1044
GLLKFK+A K+P+ EVEPASEIVKRFCTGAMSYGSISLEAHT LATAMN IGGKSNTGE
Sbjct: 969 GLLKFKDAASKVPISEVEPASEIVKRFCTGAMSYGSISLEAHTALATAMNTIGGKSNTGE 1028
Query: 1045 GGEQPSRMEPLSDGSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGEL 1104
GGEQPSRMEPL+DGS NPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGEL
Sbjct: 1029 GGEQPSRMEPLADGSRNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGEL 1088
Query: 1105 PGHKVIGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEA 1164
PGHKVIGDIA+TRNSTAGVGLISPPPHHDIYSIEDLAQLI+DLKNANP ARISVKLVSEA
Sbjct: 1089 PGHKVIGDIAITRNSTAGVGLISPPPHHDIYSIEDLAQLIHDLKNANPAARISVKLVSEA 1148
Query: 1165 GVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGR 1224
GVGVIASGVVKGHA+HVLISGHDGGTGASRWTGIK+AGLPWELGLAETHQTLVANDLRGR
Sbjct: 1149 GVGVIASGVVKGHAEHVLISGHDGGTGASRWTGIKSAGLPWELGLAETHQTLVANDLRGR 1208
Query: 1225 TILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVL 1284
T LQTDGQLKTGRDVAIAALLGAEE+GFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVL
Sbjct: 1209 TTLQTDGQLKTGRDVAIAALLGAEEYGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVL 1268
Query: 1285 REKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVDKEVTKTNEKLENI 1344
REKFAGEPEHVINFFFM+AEE+REIMSQLGFRT+ EM+GRSDMLEVDKEV K N KLENI
Sbjct: 1269 REKFAGEPEHVINFFFMVAEEMREIMSQLGFRTVNEMVGRSDMLEVDKEVVKGNAKLENI 1328
Query: 1345 DLSLLLRPAADLRPEAAQYCVQKQDHGLDMALDQKLIKLSKAALEKALPVYIETPVCNVN 1404
DLSLLLRPAA+LRPEAAQYCVQKQDHGLDMALD KLI LS AALEK LPVYIETP+CN N
Sbjct: 1329 DLSLLLRPAAELRPEAAQYCVQKQDHGLDMALDNKLISLSNAALEKGLPVYIETPICNTN 1388
Query: 1405 RAVGTMLSHEVTKRYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKG 1464
RAVGTMLSHEVTKRY+L GLPADTIHI+ TGSAGQS GAFLCPGI LELEGDSNDY+GKG
Sbjct: 1389 RAVGTMLSHEVTKRYNLAGLPADTIHIQFTGSAGQSFGAFLCPGITLELEGDSNDYIGKG 1448
Query: 1465 LSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCVRNSGARAVVEG 1524
LSGGK+V YPPKGS FDPK NI+IGNVALYGAT GEAYFNGMAAERFCVRNSGA AVVEG
Sbjct: 1449 LSGGKVVVYPPKGSNFDPKDNILIGNVALYGATRGEAYFNGMAAERFCVRNSGALAVVEG 1508
Query: 1525 VGDHGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYVLDVDGKFRSRCNPELVDLDKVEEEE 1584
VGDHGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYVLDVDG F+SRCN ELVDLDKVEEEE
Sbjct: 1509 VGDHGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYVLDVDGTFQSRCNLELVDLDKVEEEE 1568
Query: 1585 DIITLRMMIQQHQRYTNSQLAKEVLADFENLLPKFIKVFPRDYKRVLASMKV-AAAQEAA 1643
DIITLRM+IQQHQR+TNS LAKEVL DFENLLPKF+KVFPR+YKRVLASMK AA+++A
Sbjct: 1569 DIITLRMLIQQHQRHTNSLLAKEVLVDFENLLPKFVKVFPREYKRVLASMKSDAASKDAV 1628
Query: 1644 EDAVKDA-EEPDEADFKEKDAFEELKKMAIASLNEKSNQEAEQVEPTKRPSRVADAVKHR 1702
E A +D E+ DEA EKDAFEELKK+A ASLNEK + E KRPS+V DAVKHR
Sbjct: 1629 ERAAEDVDEQDDEAQAVEKDAFEELKKLATASLNEKPS------EAPKRPSQVTDAVKHR 1682
Query: 1703 GFIAYEREGVQYRDPNIRMNDWKEVMEESKPGPLLKTQSARCMDCGTPFCHQ 1754
GF+AYEREGVQYRDPN+R+NDW EVM E+KPGPLLKTQSARCMDCGTPFCHQ
Sbjct: 1683 GFVAYEREGVQYRDPNVRLNDWNEVMMETKPGPLLKTQSARCMDCGTPFCHQ 1734
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Medicago sativa (taxid: 3879) EC: 1 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q0JKD0|GLT1_ORYSJ Glutamate synthase 1 [NADH], chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0681900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 2739 bits (7101), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1327/1660 (79%), Positives = 1466/1660 (88%), Gaps = 25/1660 (1%)
Query: 95 LSGVPEKPLGLYDPKFDKDSCGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNT 154
LS +PE +GLYDP ++DSCGVGFVAELSG+ R T+ DALEML RMAHRGACGCE NT
Sbjct: 80 LSTLPESSIGLYDPSRERDSCGVGFVAELSGDYKRATVNDALEMLERMAHRGACGCEKNT 139
Query: 155 GDGAGILVALPHDFFKEAAKNVGFQLPPPGEYAVGMFFLPQSENRREESKKVFTKVAESL 214
GDGAGILVALPH+FF+E K+ GF+LP PGEYAVGM FLP E RRE SK F KVAESL
Sbjct: 140 GDGAGILVALPHNFFREVTKDAGFELPQPGEYAVGMVFLPIDEKRRERSKAEFQKVAESL 199
Query: 215 GHTVLGWRAVPTDNSGLGNSALQTEPVVEQVFLTPSLRSKVDFENQMYILRRVSMAAIRE 274
GH +LGWR VPTDNS LG SALQTEPV+EQVFLT S S+ DFE Q+YILRR+S+ +IR
Sbjct: 200 GHVILGWRRVPTDNSDLGESALQTEPVIEQVFLTKSSSSEADFEQQLYILRRLSILSIRA 259
Query: 275 SLNLEHGGAKDFYICSLSSRTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTN 334
+LNL GG +DFY+CSLSSRT+VYKGQLKP Q+K YYYADLG+E FTSYMAL+HSRFSTN
Sbjct: 260 ALNLRRGGKRDFYMCSLSSRTIVYKGQLKPCQLKGYYYADLGHENFTSYMALVHSRFSTN 319
Query: 335 TFPSWDRAQPMRILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSS 394
TFPSWDRAQPMR+LGHNGEINTL+GN NWMKAREGLL+C++LGL+KD+ K+LPIVD +S
Sbjct: 320 TFPSWDRAQPMRVLGHNGEINTLKGNKNWMKAREGLLECEKLGLTKDQFSKILPIVDATS 379
Query: 395 SDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPA 454
SDSGAFDGVLELL+R GRSLPEAVMMMIPEAWQND NM+P++KALYE+ SALMEPWDGPA
Sbjct: 380 SDSGAFDGVLELLIRGGRSLPEAVMMMIPEAWQNDVNMEPEKKALYEFLSALMEPWDGPA 439
Query: 455 LISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMML 514
LISFTDGRYLGATLDRNGLRPGRFY+THSGRV+M SEVGVVD+P +DVLRKGRLNPGMML
Sbjct: 440 LISFTDGRYLGATLDRNGLRPGRFYVTHSGRVVMGSEVGVVDVPSKDVLRKGRLNPGMML 499
Query: 515 LVDFEKRIVVDDEALKQQYSLARPYGEWLQRQKIELKNIVESIHKSERVSPGIAGVLPAS 574
LVDFE VVDDEALK QYS A PYGEWL+RQKI LK+IVES+ ++ERV+PGI+G L
Sbjct: 500 LVDFENHTVVDDEALKAQYSKAHPYGEWLKRQKIYLKDIVESVPETERVAPGISGSLTQK 559
Query: 575 NDDDNMENMGIHGLLAPLKAFGYTVEALEMLMLPMAKDGTEALGSMGNDAPLAVMSNREK 634
N+ E+ G++G++ PLKAFGYTVEALEML+LPMAKDG EALGSMGND PLAVMSNREK
Sbjct: 560 NEKK--EHAGVNGIVTPLKAFGYTVEALEMLLLPMAKDGVEALGSMGNDTPLAVMSNREK 617
Query: 635 LTFEYFKQMFAQVTNPPIDPIREKIVTSMECMIGPEGVLTETTEEQCHRLSLKGPLLSIE 694
LTFEYFKQMFAQVTNPPIDPIREKIVTSMECMIGPEG L ETTE+QC+RL+L+GPL+SI+
Sbjct: 618 LTFEYFKQMFAQVTNPPIDPIREKIVTSMECMIGPEGDLLETTEKQCNRLALEGPLVSID 677
Query: 695 EMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAF 754
EMEAIK+MNYRGWRSKVLDITY K GR+GLEETLDRIC EAR AIK+GYT+LVLSDR F
Sbjct: 678 EMEAIKKMNYRGWRSKVLDITYPKKSGRKGLEETLDRICTEARGAIKKGYTVLVLSDRGF 737
Query: 755 SSKRVAVSSLLAVGAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAICPYLA 814
SS RVAVSSLLAVGAVH HLV NLERTR+GL+VESAEPREVHHFCTLVGFGADA+CPYLA
Sbjct: 738 SSDRVAVSSLLAVGAVHQHLVANLERTRVGLLVESAEPREVHHFCTLVGFGADAVCPYLA 797
Query: 815 TEAIWRLQVDGKIPPKASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIF 874
EAIW LQ DGKIPP G+ +SK+ELVKKYF ASNYGMMKVLAKMGISTLASYKGAQIF
Sbjct: 798 IEAIWCLQNDGKIPPNGDGKPYSKEELVKKYFYASNYGMMKVLAKMGISTLASYKGAQIF 857
Query: 875 EALGLSSEVIEKCFAGTPSRVDGATFEVLASDALHLHELAFPTRILPPGSAEAVALPNPG 934
EALGLSSEVI KCF GTPSR++GATFE+LA DAL LHELAFP+R PPGSA+A ALPNPG
Sbjct: 858 EALGLSSEVIRKCFDGTPSRIEGATFEMLARDALRLHELAFPSRAPPPGSADAKALPNPG 917
Query: 935 DYHWRKGGEIHLNDPLAIAKLQEAARGNSVAAYKEYSKRIQELNKTCNLRGLLKFKEADV 994
DYHWRK GE+HLNDPLA+AKLQEAAR NS AAYKEYS+RIQELNKTCNLRG+LKFK+
Sbjct: 918 DYHWRKNGEVHLNDPLAMAKLQEAARVNSRAAYKEYSRRIQELNKTCNLRGMLKFKDTAD 977
Query: 995 KIPLEEVEPASEIVKRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEP 1054
I ++EVEPASEIVKRF TGAMSYGSISLEAHT LA AMNK+GGKSNTGEGGEQPSRMEP
Sbjct: 978 MISVDEVEPASEIVKRFVTGAMSYGSISLEAHTALAMAMNKLGGKSNTGEGGEQPSRMEP 1037
Query: 1055 LSDGSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIA 1114
L++GSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIA
Sbjct: 1038 LANGSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIA 1097
Query: 1115 VTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVV 1174
VTR+STAGVGLISPPPHHDIYSIEDLAQLI+DLKN+NP ARISVKLVSEAGVGV+ASGVV
Sbjct: 1098 VTRHSTAGVGLISPPPHHDIYSIEDLAQLIHDLKNSNPRARISVKLVSEAGVGVVASGVV 1157
Query: 1175 KGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLK 1234
KGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVAN LRGR ILQTDGQLK
Sbjct: 1158 KGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANGLRGRAILQTDGQLK 1217
Query: 1235 TGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEH 1294
TG+DVA+A LLGAEEFGFSTAPLITLGCIMMRKCH NTCPVGIATQDPVLREKFAGEPEH
Sbjct: 1218 TGKDVAVACLLGAEEFGFSTAPLITLGCIMMRKCHTNTCPVGIATQDPVLREKFAGEPEH 1277
Query: 1295 VINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVDKEVTKTNEKLENIDLSLLLRPAA 1354
VINFFFMLAEELREIMSQLGFRTITEM+GRSDMLEVD EV K+NEKLENIDLSL+L+PAA
Sbjct: 1278 VINFFFMLAEELREIMSQLGFRTITEMVGRSDMLEVDPEVVKSNEKLENIDLSLILKPAA 1337
Query: 1355 DLRPEAAQYCVQKQDHGLDMALDQKLIKLSKAALEKALPVYIETPVCNVNRAVGTMLSHE 1414
++RP AAQYCV+KQDHGLDMALD KLI LSKAALEK + V+IETP+ N NRAVGTMLSHE
Sbjct: 1338 EIRPGAAQYCVEKQDHGLDMALDNKLIALSKAALEKEVRVFIETPIQNTNRAVGTMLSHE 1397
Query: 1415 VTKRYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYP 1474
VTKRYH+ GLPA TIH+KLTGSAGQS+GAFLCPGI LELEGDSNDYVGKGLSGGKIV YP
Sbjct: 1398 VTKRYHMKGLPAGTIHVKLTGSAGQSLGAFLCPGITLELEGDSNDYVGKGLSGGKIVVYP 1457
Query: 1475 PKGSLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCVRNSGARAVVEGVGDHGCEYMT 1534
P+ S F P+ NIVIGNVALYGAT GEAYFNGMAAERFCVRNSGA+AVVEG+GDHGCEYMT
Sbjct: 1458 PRDSTFIPEDNIVIGNVALYGATIGEAYFNGMAAERFCVRNSGAQAVVEGIGDHGCEYMT 1517
Query: 1535 GGTVVVLGKTGRNFAAGMSGGIAYVLDVDGKFRSRCNPELVDLDKVEEEEDIITLRMMIQ 1594
GGTVV+LGKTGRNFAAGMSGGIAYV D+DGKF RCN ELVDL VEEEEDI TL+MMI+
Sbjct: 1518 GGTVVILGKTGRNFAAGMSGGIAYVYDIDGKFSVRCNHELVDLYHVEEEEDITTLKMMIE 1577
Query: 1595 QHQRYTNSQLAKEVLADFENLLPKFIKVFPRDYKRVLASMKVAAAQEAAEDAVKDAEEPD 1654
QH+ T S +A+++L++F+ LLPKF+KVFPRDYKRVL +MK A
Sbjct: 1578 QHRLNTGSVVARDILSNFDTLLPKFVKVFPRDYKRVLDNMKAEKAAAKLA---------- 1627
Query: 1655 EADFKEKDAFEELKKMAIASLNEKSNQEAEQVEPTKRPSRVADAVKHRGFIAYEREGVQY 1714
K+ I++ + ++ + + T RP+RV++A K+RGFI+YERE + Y
Sbjct: 1628 -------------KEPKISNGVSVTTKKVQPEQSTNRPTRVSNAKKYRGFISYERESISY 1674
Query: 1715 RDPNIRMNDWKEVMEESKPGPLLKTQSARCMDCGTPFCHQ 1754
RDPN R+ DWKEV ES PGPLL TQSARCMDCGTPFCHQ
Sbjct: 1675 RDPNERVKDWKEVAIESVPGPLLNTQSARCMDCGTPFCHQ 1714
|
Involved in glutamate biosynthesis and plays a major role in the primary ammonium ions assimilation in seedling roots. May be involved in the reutilization of glutamine in developing organs. Plays a role in the development of tillers. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q0DG35|GLT2_ORYSJ Glutamate synthase 2 [NADH], chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0555600 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 2719 bits (7047), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1295/1661 (77%), Positives = 1459/1661 (87%), Gaps = 14/1661 (0%)
Query: 94 ALSGVPEKPLGLYDPKFDKDSCGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETN 153
++S +PE +GLYDP ++DSCGVGF+AELSGE SRKT+ DA+EML RMAHRGACGCE N
Sbjct: 86 SMSKIPESSIGLYDPSMERDSCGVGFIAELSGEYSRKTVDDAIEMLDRMAHRGACGCEKN 145
Query: 154 TGDGAGILVALPHDFFKEAAKNVGFQLPPPGEYAVGMFFLPQSENRREESKKVFTKVAES 213
TGDGAGILVALPH+FF+E K+ GF+LPPPGEYAVGMFF+P + RRE+SK +F + AE
Sbjct: 146 TGDGAGILVALPHNFFREVTKDAGFELPPPGEYAVGMFFMPTDDKRREKSKLLFREKAEL 205
Query: 214 LGHTVLGWRAVPTDNSGLGNSALQTEPVVEQVFLTPSLRSKVDFENQMYILRRVSMAAIR 273
LGHTVLGWR VPTDNSGLG SA+ TEPV+EQVF+T S SK DFE QMY+LRR S+ +IR
Sbjct: 206 LGHTVLGWRRVPTDNSGLGQSAVDTEPVIEQVFVTKSASSKADFERQMYVLRRFSVMSIR 265
Query: 274 ESLNLEHGGAKDFYICSLSSRTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFST 333
E L +++GG KDFY+CSLSSRT+VYKGQLKP Q+K Y++ADLG+E FTSYMALIHSRFST
Sbjct: 266 EVLGVKNGGTKDFYMCSLSSRTIVYKGQLKPSQLKGYFFADLGDESFTSYMALIHSRFST 325
Query: 334 NTFPSWDRAQPMRILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVS 393
NTFPSWDRAQPMR+LGHNGEINTLRGN NWMKAREGLLKC+ LGL++DEM KLLPIVD +
Sbjct: 326 NTFPSWDRAQPMRVLGHNGEINTLRGNKNWMKAREGLLKCEGLGLTRDEMLKLLPIVDAT 385
Query: 394 SSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGP 453
SSDSGA D VLELL+++GRS PEAVMMMIPEAWQND NMDP+RKALYE+FSALMEPWDGP
Sbjct: 386 SSDSGAIDNVLELLIQSGRSAPEAVMMMIPEAWQNDVNMDPERKALYEFFSALMEPWDGP 445
Query: 454 ALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMM 513
ALISFTDGRYLGATLDRNGLRPGRFY+T+SGRVIMASEVGVVD+PP+DV RKGRLNPGMM
Sbjct: 446 ALISFTDGRYLGATLDRNGLRPGRFYVTYSGRVIMASEVGVVDVPPQDVSRKGRLNPGMM 505
Query: 514 LLVDFEKRIVVDDEALKQQYSLARPYGEWLQRQKIELKNIVESIHKSERVSPGIAGVLPA 573
LLVDFE VV+D+ LK++YS RPYGEWL+RQ+I+L +I+ES++++ER++P I+G LP
Sbjct: 506 LLVDFENHCVVNDDELKKEYSKVRPYGEWLKRQRIQLTDIIESVNEAERIAPSISGALPI 565
Query: 574 SNDDDNMENMGIHGLLAPLKAFGYTVEALEMLMLPMAKDGTEALGSMGNDAPLAVMSNRE 633
+ + N +MGI G+L PLKAFGYT EALEMLMLPMAKDG EALGSMGND PLAVMSNRE
Sbjct: 566 TKE--NKADMGICGILTPLKAFGYTREALEMLMLPMAKDGQEALGSMGNDTPLAVMSNRE 623
Query: 634 KLTFEYFKQMFAQVTNPPIDPIREKIVTSMECMIGPEGVLTETTEEQCHRLSLKGPLLSI 693
KLTFEYFKQMFAQVTNPPIDPIREKIVTSMECMIGPEG L+ETTE QCHRL+LK PLL+
Sbjct: 624 KLTFEYFKQMFAQVTNPPIDPIREKIVTSMECMIGPEGDLSETTERQCHRLTLKSPLLNT 683
Query: 694 EEMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRA 753
EMEAIK+MNYRGWRSKVLDITY K +GR GL++TLD+ICA+AR+AI EGYT+LVLSDR
Sbjct: 684 NEMEAIKKMNYRGWRSKVLDITYPKKNGRMGLKQTLDKICAQAREAIHEGYTILVLSDRG 743
Query: 754 FSSKRVAVSSLLAVGAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAICPYL 813
FSS+RVAVSSLLAVGAVH HLV +LERTRIGL+VESAEPREVHHF TL+GFGADAICPYL
Sbjct: 744 FSSERVAVSSLLAVGAVHQHLVSHLERTRIGLLVESAEPREVHHFSTLIGFGADAICPYL 803
Query: 814 ATEAIWRLQVDGKIPPKASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQI 873
A EAIWRLQ+DG+IPP G+ +++++L++KYF ASNYGMMKVLAKMGISTLASYKGAQI
Sbjct: 804 AIEAIWRLQIDGRIPPN-DGKPYTQEQLIEKYFYASNYGMMKVLAKMGISTLASYKGAQI 862
Query: 874 FEALGLSSEVIEKCFAGTPSRVDGATFEVLASDALHLHELAFPTRILPPGSAEAVALPNP 933
FEALGL+SEV+ KCF GTPSRV+GATFE+LA DAL LHE+AFP+R LPPGSA+A ALPNP
Sbjct: 863 FEALGLASEVVSKCFEGTPSRVEGATFEMLAQDALRLHEIAFPSRTLPPGSADANALPNP 922
Query: 934 GDYHWRKGGEIHLNDPLAIAKLQEAARGNSVAAYKEYSKRIQELNKTCNLRGLLKFKEAD 993
GDYHWRK GE+HLNDP +IAKLQEAAR NS AYKEYS+RI ELNK C LRG+LKF+E
Sbjct: 923 GDYHWRKNGEVHLNDPFSIAKLQEAARINSREAYKEYSRRIYELNKACTLRGMLKFREIP 982
Query: 994 VKIPLEEVEPASEIVKRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRME 1053
+I L+EVEPA EIVKRFCTGAMSYGSISLEAHT+LA AMN +GGKSNTGEGGEQP RM
Sbjct: 983 NQISLDEVEPAKEIVKRFCTGAMSYGSISLEAHTSLAEAMNTLGGKSNTGEGGEQPCRMV 1042
Query: 1054 PLSDGSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDI 1113
PL DGS NP+ SAIKQVASGRFGVS YYLTNA E+QIKMAQGAKPGEGGELPGHKVIGDI
Sbjct: 1043 PLPDGSKNPRISAIKQVASGRFGVSIYYLTNAVEVQIKMAQGAKPGEGGELPGHKVIGDI 1102
Query: 1114 AVTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGV 1173
AVTRNSTAGVGLISPPPHHDIYSIEDLAQLI+DLKNANPGARISVKLVSEAGVG++ASGV
Sbjct: 1103 AVTRNSTAGVGLISPPPHHDIYSIEDLAQLIHDLKNANPGARISVKLVSEAGVGIVASGV 1162
Query: 1174 VKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQL 1233
VKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVAN LRGR +LQTDGQ+
Sbjct: 1163 VKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANGLRGRAVLQTDGQM 1222
Query: 1234 KTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPE 1293
KTGRDVA+A LLGAEEFGFSTAPLITLGCIMMRKCH NTCP GIATQDPVLR KFAG+PE
Sbjct: 1223 KTGRDVAVACLLGAEEFGFSTAPLITLGCIMMRKCHTNTCPAGIATQDPVLRAKFAGKPE 1282
Query: 1294 HVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVDKEVTKTNEKLENIDLSLLLRPA 1353
HVIN+FFMLAEE+REIM+QLGFRT+ EM+GRSDMLE+D +V + NEKLENIDLS LL+PA
Sbjct: 1283 HVINYFFMLAEEVREIMAQLGFRTVNEMVGRSDMLEIDPKVLEGNEKLENIDLSRLLKPA 1342
Query: 1354 ADLRPEAAQYCVQKQDHGLDMALDQKLIKLSKAALEKALPVYIETPVCNVNRAVGTMLSH 1413
A++ P A QYCV+KQDHGLDMALD KLI S AAL K + V+IETPV N+NRAVGTMLSH
Sbjct: 1343 AEISPGAVQYCVEKQDHGLDMALDNKLIASSTAALRKGVRVFIETPVRNINRAVGTMLSH 1402
Query: 1414 EVTKRYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAY 1473
EVTKRYH+ GLP+DTIHIKL GSAGQS GAFLCPGI LELEGDSNDYVGKGLSGGKIV Y
Sbjct: 1403 EVTKRYHIHGLPSDTIHIKLNGSAGQSFGAFLCPGITLELEGDSNDYVGKGLSGGKIVVY 1462
Query: 1474 PPKGSLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCVRNSGARAVVEGVGDHGCEYM 1533
PP+ S F+P+ NIVIGNVALYGAT GEAYFNGMAAERFCVRNSGA+AVVEG+GDHGCEYM
Sbjct: 1463 PPRNSRFNPQDNIVIGNVALYGATKGEAYFNGMAAERFCVRNSGAQAVVEGIGDHGCEYM 1522
Query: 1534 TGGTVVVLGKTGRNFAAGMSGGIAYVLDVDGKFRSRCNPELVDLDKVEEEEDIITLRMMI 1593
TGGT V+LGKTGRNFAAGMSGGIAYV DVDGKF SRCN ELVDL V EE+DI TLRMMI
Sbjct: 1523 TGGTAVILGKTGRNFAAGMSGGIAYVYDVDGKFSSRCNYELVDLYAVVEEDDITTLRMMI 1582
Query: 1594 QQHQRYTNSQLAKEVLADFENLLPKFIKVFPRDYKRVLASMKVAAAQEAAEDAVKDAEEP 1653
QQH+ +T S LA+++L +F+ LLPKFIKV+PRDYKRVL +K A + AE ++
Sbjct: 1583 QQHRLHTQSDLARDILLNFDTLLPKFIKVYPRDYKRVLDKLKEEKAAKEAEQKAREV--- 1639
Query: 1654 DEADFKEKDAFEELKKMAIASLNEKSNQEAEQVEPTKRPSRVADAVKHRGFIAYEREGVQ 1713
D K + + +++ + EK E EP+ RPSRV++AVK+RGFI YEREG
Sbjct: 1640 --VDKKPVEVIQAPNGISVKT--EKVMNE----EPSSRPSRVSNAVKYRGFIKYEREGTS 1691
Query: 1714 YRDPNIRMNDWKEVMEESKPGPLLKTQSARCMDCGTPFCHQ 1754
YRDPN R+ DW EV E PGPLLKTQSARCMDCGTPFCHQ
Sbjct: 1692 YRDPNERVKDWNEVAIELVPGPLLKTQSARCMDCGTPFCHQ 1732
|
Involved in glutamate biosynthesis. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q9C102|GLT1_SCHPO Putative glutamate synthase [NADPH] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=glt1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1796 bits (4653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 913/1675 (54%), Positives = 1178/1675 (70%), Gaps = 72/1675 (4%)
Query: 94 ALSGVPEKPLGLYDPKFDKDSCGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETN 153
+ +G K LYDP ++KDSCGVGF + G+ S K +TDA +L M HRGA G +T
Sbjct: 48 SWAGALPKAQALYDPAYEKDSCGVGFTCHIKGQVSHKIVTDARLLLCNMTHRGATGADTR 107
Query: 154 TGDGAGILVALPHDFFKEAAKNVGFQLPPPGEYAVG-MFFLPQSENRREESKKVFTKVAE 212
GDGAG++ +P+ F ++ +G LP GEYA+G +FF P+++ RE + FT+VAE
Sbjct: 108 DGDGAGVMTGMPYTFMQKEFGQIGCTLPKSGEYAIGNVFFSPEADVCRE-AMTAFTQVAE 166
Query: 213 SLGHTVLGWRAVPTDNSGLGNSALQTEPVVEQ--VFLTPSLRSKVDF-----ENQMYILR 265
LG +L WR+VP DNS LG +AL EP + Q V L + + +F E Q+Y+LR
Sbjct: 167 KLGLAILAWRSVPCDNSILGPAALSREPTILQPCVVLKAAYDGEAEFDTDLFERQLYVLR 226
Query: 266 RVSMAAIRESLNLEHGGAKDFYICSLSSRTVVYKGQLKPIQMKDYYYADLGNERFTSYMA 325
+ S I G K FYICSL T+VYKGQL P+Q+ +Y+ DL N + S+ A
Sbjct: 227 KQSSHLI--------GKEKWFYICSLHRETIVYKGQLAPVQVYNYFL-DLNNAEYVSHFA 277
Query: 326 LIHSRFSTNTFPSWDRAQPMRILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKK 385
L+HSRFSTNTFPSWDRAQPMR+ HNGEINTLRGN NWM AREGL+K G +E
Sbjct: 278 LVHSRFSTNTFPSWDRAQPMRLAAHNGEINTLRGNKNWMHAREGLMKSSRFG---EEFAS 334
Query: 386 LLPIVDVSSSDSGAFDGVLELLVRAGR-SLPEAVMMMIPEAWQNDKNMDPQRKALYEYFS 444
LLPI++ SDS AFD V+ELL +G SLPEAVM++IPEAWQNDKN+ ++ A YE+ +
Sbjct: 335 LLPIIERGGSDSAAFDNVIELLCASGVVSLPEAVMLLIPEAWQNDKNISDEKAAFYEWAA 394
Query: 445 ALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLR 504
MEPWDGPAL +F DGRY GA LDRNGLRP RFY+T +I ASEVG V I P+ +++
Sbjct: 395 CQMEPWDGPALFTFADGRYCGANLDRNGLRPCRFYLTSDDMMICASEVGTVGIEPDRIVQ 454
Query: 505 KGRLNPGMMLLVDFEKRIVVDDEALKQQYSLARPYGEWLQRQKIELKNIVESIHKSERVS 564
KGRL PG MLLVD ++ +VDD+ LK + + WL ++ I++ +IV+S+ +S V
Sbjct: 455 KGRLYPGRMLLVDTKEGRIVDDKELKHNIASRYDFRSWLDQELIDMNSIVDSLIESTSVD 514
Query: 565 -PGIAGVLPASNDDDNMENMGIHGLLAPLKAFGYTVEALEMLMLPMAKDGTEALGSMGND 623
I +P ++D + AFGYT+E + M+M PMA G E LGSMGND
Sbjct: 515 LTPIVDDVPLADDKTML-------------AFGYTLEQINMIMAPMANGGKETLGSMGND 561
Query: 624 APLAVMSNREKLTFEYFKQMFAQVTNPPIDPIREKIVTSMECMIGPEGVLTETTEEQCHR 683
A +A +S++ +L ++YF+Q+FAQVTNPPIDPIRE IV S++C IGP G L E + QC R
Sbjct: 562 AAIACLSDQPRLLYDYFRQLFAQVTNPPIDPIREAIVMSLQCYIGPSGNLLEINQSQCRR 621
Query: 684 LSLKGPLLSIEEMEAIKRMN--YRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIK 741
L + P+L++EE A+K ++ Y W+ +DIT+ K G G ++RIC+EA A+
Sbjct: 622 LRMPTPILTVEEFNALKNVDRIYPDWKVASIDITFFKSEGVAGYAAAIERICSEADTAVN 681
Query: 742 EGYTLLVLSDRAFSSKRVAVSSLLAVGAVHHHLVKNLERTRIGLIVESAEPREVHHFCTL 801
EGY +VLSDR +S+RV ++S+ A GAVHH+LV+N R+R+ L+ ES + REVHH CTL
Sbjct: 682 EGYKAIVLSDRNVNSERVPLASIAACGAVHHYLVQNKLRSRVALVCESGDAREVHHMCTL 741
Query: 802 VGFGADAICPYLATEAIWRLQVDGKIPPKASGEFHSKDELVKKYFKASNYGMMKVLAKMG 861
+G+GADA+CPYLA EA+ +L + P + E +K + A N G++KV++KMG
Sbjct: 742 LGYGADAVCPYLAMEALTKLVRQNAMKPGITEE-----TAIKNFKHAINGGILKVMSKMG 796
Query: 862 ISTLASYKGAQIFEALGLSSEVIEKCFAGTPSRVDGATFEVLASDALHLHELAFPTRILP 921
ISTL SYKGAQIFEALG+ +EVI KCF GT SR+ G TFE +A DA LHE +PT
Sbjct: 797 ISTLQSYKGAQIFEALGIDNEVINKCFLGTASRIRGVTFEHIALDAFALHERGYPT---- 852
Query: 922 PGSAEAVALPNPGDYHWRKGGEIHLNDPLAIAKLQEAARGNSVAAYKEYSKRIQELNKTC 981
S ++ +P+ GD+++R GGE H+N P AIA LQ+A R + AAY E+S+ E + C
Sbjct: 853 DQSIRSLQIPDMGDFYYRDGGEQHVNHPKAIASLQDAVRNKNEAAYAEFSRTHYEQTRRC 912
Query: 982 NLRGLLKFK-EADVKIPLEEVEPASEIVKRFCTGAMSYGSISLEAHTTLATAMNKIGGKS 1040
LRG+L F ++ IP+E+VEP +EIV+RFCTGAMSYGSIS+E+H++LA AMN++GGKS
Sbjct: 913 TLRGMLDFDFDSSQAIPIEQVEPWTEIVRRFCTGAMSYGSISMESHSSLAIAMNRLGGKS 972
Query: 1041 NTGEGGEQPSRMEPLSDGSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGE 1100
NTGEGGE P+R + L++G + RSAIKQ+ASGRFGV+S+YL++ADELQIKMAQGAKPGE
Sbjct: 973 NTGEGGEDPARSQRLANG--DTMRSAIKQIASGRFGVTSWYLSDADELQIKMAQGAKPGE 1030
Query: 1101 GGELPGHKVIGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKL 1160
GGELPG+KV IA TR+STAGVGLISPPPHHDIYSIEDL QLIYD+K+ANP AR+SVKL
Sbjct: 1031 GGELPGNKVSESIAKTRHSTAGVGLISPPPHHDIYSIEDLKQLIYDMKSANPRARVSVKL 1090
Query: 1161 VSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVAND 1220
VSE GVG++ASGV K ADH+L+SGHDGGTGASRWTGIK AGLPWELG+AETHQTLV ND
Sbjct: 1091 VSEVGVGIVASGVAKAKADHILVSGHDGGTGASRWTGIKYAGLPWELGVAETHQTLVLND 1150
Query: 1221 LRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQ 1280
LRGR ++QTDGQ++TGRDVAIA LLGAEE+GF+T PLI LGCIMMRKCH NTCPVGIATQ
Sbjct: 1151 LRGRVVIQTDGQIRTGRDVAIACLLGAEEWGFATTPLIALGCIMMRKCHLNTCPVGIATQ 1210
Query: 1281 DPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVDKEVTKTNEK 1340
DP LR+KF G+PEHV+NFF+ +AEELR IM++LGFRTI EM+GRSD L+V + + N K
Sbjct: 1211 DPELRKKFEGQPEHVVNFFYYVAEELRGIMAKLGFRTINEMVGRSDKLKVAEPI---NNK 1267
Query: 1341 LENIDLSLLLRPAADLRPEAAQYCVQKQDHGLDMALDQKLIKLSKAALEKALPVYIETPV 1400
+ +DL+ LL PA LRP AA Y V+KQDH L LD KLI ++ LE+ +P +E +
Sbjct: 1268 SKLLDLTPLLTPAFTLRPGAATYNVRKQDHRLYTRLDNKLIDEAEVTLEEGIPSVVECEI 1327
Query: 1401 CNVNRAVGTMLSHEVTKRYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSNDY 1460
N +R +G LS++++KRY GLP D+I + + GSAGQS GAFL PG+ L+LEGD NDY
Sbjct: 1328 INTDRTLGATLSNKISKRYGEEGLPTDSIRVNVFGSAGQSFGAFLAPGVTLQLEGDCNDY 1387
Query: 1461 VGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCVRNSGARA 1520
VGKGLSGG+++ YPP+ S F P+ N++IGNV LYGATSG A+ +G+AAERF VRNSGA A
Sbjct: 1388 VGKGLSGGRLIIYPPRVSPFKPEENMIIGNVCLYGATSGHAFISGVAAERFAVRNSGAIA 1447
Query: 1521 VVEGVGDHGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYVLDVDGKFRSRCNPELVDLDKV 1580
VVEGVGDHGCEYMTGG VV+LG TGRNFAAGMSGGIAYV D+ F + N E+VD+ V
Sbjct: 1448 VVEGVGDHGCEYMTGGRVVILGSTGRNFAAGMSGGIAYVYDMQMDFAGKINTEMVDISSV 1507
Query: 1581 EEEEDIITLRMMIQQHQRYTNSQLAKEVLADFENLLPKFIKVFPRDYKRVLASMKVAAAQ 1640
+ +I LR +IQ H+ YT SQ+A +L+DF L +F+KV PR+YK VL + AA +
Sbjct: 1508 TDAAEIAFLRGLIQDHRHYTGSQVADRILSDFPRHLSRFVKVLPREYKAVLE--REAAKK 1565
Query: 1641 EAAEDAVKDAEEPDEADFKEKDAFEELKKMAIASLNEKSNQEAEQVEPTKRPS--RVADA 1698
E A+ + AF + I E++N + VE T + + A
Sbjct: 1566 EEAK------------RLQYPKAF--MPGNPIRQQIEETNAQIADVEDTLGATVKKSAPL 1611
Query: 1699 VKHRGFIAYEREGVQYRDPNIRMNDWKEVMEESKPGPLLKTQSARCMDCGTPFCH 1753
K RGF+ Y+R YR+P R NDWKE+ + L+ Q+ARCMDCGTPFC
Sbjct: 1612 DKLRGFMKYQRRSEHYRNPLKRTNDWKELSVRLREDE-LRVQTARCMDCGTPFCQ 1665
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 3 |
| >sp|P55037|GLTB_SYNY3 Ferredoxin-dependent glutamate synthase 1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=gltB PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1632 bits (4226), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 835/1561 (53%), Positives = 1072/1561 (68%), Gaps = 56/1561 (3%)
Query: 104 GLYDPKFDKDSCGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILVA 163
GLYDP+ + D+CGVGF+ ++ G+ S + L+MLV + HRGACGCE NTGDGAGIL+
Sbjct: 32 GLYDPQNEHDACGVGFIVQMKGKVSHDIVEQGLQMLVNLEHRGACGCEPNTGDGAGILIQ 91
Query: 164 LPHDFFKEAAKNVGFQLPPPGEYAVGMFFLPQSENRREESKKVFTKVAESLGHTVLGWRA 223
+PH F ++ A G +P PG+YAVG + R E+++ F + G VLGWR
Sbjct: 92 VPHKFIQKIAGAEGITIPAPGQYAVGNIYGSPDPLARAEARQKFNDIVAQEGLKVLGWRD 151
Query: 224 VPTDNSGLGNSALQTEPVVEQVFLT--PSLRSKVDFENQMYILRRVSMAAIRESLNLEHG 281
+PT N LG +A+ +EP ++QV++ L +DFE ++Y++R+++ AIR +
Sbjct: 152 IPTQNEPLGETAIASEPFMQQVYIARPEGLTDDLDFERKLYVIRKLTHGAIRSPKIDTY- 210
Query: 282 GAKDFYICSLSSRTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDR 341
+Y+ SLS+RT+VYKG L Q+ YY +L + S +AL+HSRFSTNTFPSW+R
Sbjct: 211 ----WYVASLSARTLVYKGMLTTAQVGQYY-PELHDPDMESALALVHSRFSTNTFPSWER 265
Query: 342 AQPMRILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFD 401
+ P R + HNGEINT+RGNVNWM+AR+ L + G ++M K+ P++++ SDS FD
Sbjct: 266 SHPYRYIAHNGEINTMRGNVNWMQARQALFESSLFG---EDMAKVQPVINIDGSDSTIFD 322
Query: 402 GVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDG 461
LELL AGRSLP AVMMMIPE W ++M ++KA Y+Y S LMEPWDGPA I+FT+G
Sbjct: 323 NALELLYLAGRSLPHAVMMMIPEPWSAHESMSQEKKAFYKYHSCLMEPWDGPASIAFTNG 382
Query: 462 RYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVDFEKR 521
+ +GA LDRNGLRP R+Y+T VIMASE GV+ I PE V +KGRL PG M LVD E+
Sbjct: 383 KMMGAVLDRNGLRPSRYYVTKDDLVIMASEAGVLPIEPERVAKKGRLQPGRMFLVDMEQG 442
Query: 522 IVVDDEALKQQYSLARPYGEWLQRQKIELKNIVESIHKSERVSPGIAGVLPASNDDDNME 581
++ DE +KQ+ PYGEWL L+ + SPG N+
Sbjct: 443 RIIADEEIKQEIVSQHPYGEWLAANLKSLEQLP---------SPG------------NVP 481
Query: 582 NMGIHGLLAPLKAFGYTVEALEMLMLPMAKDGTEALGSMGNDAPLAVMSNREKLTFEYFK 641
L AFGYT E L +L+ PM +DG EA+GSMG D PLAV+S++ KL + YF+
Sbjct: 482 GTDAESLRQRQMAFGYTFEELRILLAPMGRDGVEAIGSMGADTPLAVLSDKPKLLYNYFQ 541
Query: 642 QMFAQVTNPPIDPIREKIVTSMECMIGPEGVLTETTEEQCHRLSLKGPLLSIEEMEAIKR 701
Q+FAQVTNPPID IRE+I+TS E IG EG L + E C + LK P+L+ E++ +K
Sbjct: 542 QLFAQVTNPPIDSIREEIITSAETTIGGEGNLLDPRPESCRLIELKTPILTNEDLAKLKA 601
Query: 702 MNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRVAV 761
++ ++S LDI + + G GL+ LD + EA AI +G L++LSDR S+++ A+
Sbjct: 602 LDDDEFKSVTLDILFDPNQGEAGLKTALDNLFTEADQAISQGANLIILSDRQVSAEKAAI 661
Query: 762 SSLLAVGAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAICPYLATEAIWRL 821
+LLAV +HHHL++N RT++GL++ES EPREVHHF L+G+G AI PYLA E +
Sbjct: 662 PALLAVSGLHHHLIRNGSRTKVGLVLESGEPREVHHFAVLLGYGCGAINPYLAFETL--- 718
Query: 822 QVDGKIPPKASGEFHSKDE--LVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEALGL 879
DG I A G + D K Y KA+ G++KV +K+GIST+ SY+GAQIFEA+GL
Sbjct: 719 --DGMI---AEGLLVNVDHKTACKNYIKAATKGVIKVASKIGISTIQSYRGAQIFEAVGL 773
Query: 880 SSEVIEKCFAGTPSRVDGATFEVLASDALHLHELAFPTRILPPGSAEAVALPNPGDYHWR 939
+ VI++ F T SR+ G+ V+A +A+ H+ AF R PG + + G+Y WR
Sbjct: 774 NQSVIDEYFCRTSSRIQGSDLGVIAQEAILRHQHAFAPR---PGDLHTLDVG--GEYQWR 828
Query: 940 KGGEIHLNDPLAIAKLQEAARGNSVAAYKEYSKRIQELN-KTCNLRGLLKFKEADVKIPL 998
K GE HL P I LQ A R + YK+Y+ + E N K LRGLL F++ + IPL
Sbjct: 829 KDGEEHLFSPQTIHLLQRAVREGNYELYKQYAALVNEQNQKFFTLRGLLDFQDRE-SIPL 887
Query: 999 EEVEPASEIVKRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDG 1058
EEVEP I+KRF TGAMSYGSIS EAH +LA AMN+IGGKSNTGEGGE P R +D
Sbjct: 888 EEVEPIEAIMKRFKTGAMSYGSISKEAHESLAIAMNRIGGKSNTGEGGEDPERFTWTNDQ 947
Query: 1059 SMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRN 1118
+ K SAIKQVASGRFGV+S YL+ A E+QIKMAQGAKPGEGG+LPG KV IA R+
Sbjct: 948 G-DSKNSAIKQVASGRFGVTSLYLSQAKEIQIKMAQGAKPGEGGQLPGKKVYPWIAKVRH 1006
Query: 1119 STAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHA 1178
ST GVGLISPPPHHDIYSIEDLA+LI+DLKNAN ARI+VKLVSE GVG IA+GV K HA
Sbjct: 1007 STPGVGLISPPPHHDIYSIEDLAELIHDLKNANREARINVKLVSEVGVGTIAAGVAKAHA 1066
Query: 1179 DHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRD 1238
D VL+SG+DGGTGAS T IK+AGLPWELGLAETHQTLV N+LR R +++TDGQ+KTGRD
Sbjct: 1067 DVVLVSGYDGGTGASPQTSIKHAGLPWELGLAETHQTLVLNNLRSRIVVETDGQMKTGRD 1126
Query: 1239 VAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINF 1298
VAIAALLGAEEFGFSTAPL++LGCIMMR CH NTCPVGIATQ+P LR KF G+P H +NF
Sbjct: 1127 VAIAALLGAEEFGFSTAPLVSLGCIMMRACHLNTCPVGIATQNPELRAKFTGDPAHAVNF 1186
Query: 1299 FFMLAEELREIMSQLGFRTITEMIGRSDMLEVDKEVTKTNEKLENIDLSLLLRPAADLRP 1358
+A ELRE+M+QLGFRTI EM+GR+D+LE K V + K + IDLS +L ++
Sbjct: 1187 MTFIATELREVMAQLGFRTINEMVGRTDILEPKKAV--AHWKAKGIDLSTILH-QPEVGD 1243
Query: 1359 EAAQYCVQKQDHGLDMALD-QKLIKLSKAALEKALPVYIETPVCNVNRAVGTMLSHEVTK 1417
+ +YC QDHGL +LD +L+ L + A+ K V P+ N+NR VGT++ +E+TK
Sbjct: 1244 DVGRYCQIPQDHGLQHSLDITQLLDLCQPAIAKGEKVTATLPITNINRVVGTIVGNEITK 1303
Query: 1418 RYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPKG 1477
R H GLP DT+H+ GSAGQS GAF+ G+ LELEGD+NDY+GKGLSGGKI+ YPPKG
Sbjct: 1304 R-HWEGLPEDTVHLHFQGSAGQSFGAFIPKGMTLELEGDANDYLGKGLSGGKIIVYPPKG 1362
Query: 1478 SLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCVRNSGARAVVEGVGDHGCEYMTGGT 1537
S F NI+ GNV LYGAT+GE Y +GM ERFCVRNSG VVE VGDHGCEYMTGG
Sbjct: 1363 SSFIASENIIAGNVCLYGATAGEVYISGMVGERFCVRNSGVNTVVEAVGDHGCEYMTGGK 1422
Query: 1538 VVVLGKTGRNFAAGMSGGIAYVLDVDGKFRSRCNPELVDLDKVEEEEDIITLRMMIQQHQ 1597
VVVLG+TGRNFAAGMSGG+AY+ D G F +RCN +V L+K+E+ E+I L+ +IQ H
Sbjct: 1423 VVVLGQTGRNFAAGMSGGVAYIFDETGDFATRCNSAMVGLEKLEDPEEIKDLKELIQNHV 1482
Query: 1598 RYTNSQLAKEVLADFENLLPKFIKVFPRDYKRVLASMKVA-AAQEAAEDAVKDAEEPDEA 1656
YT+S K VLAD+E +PKF+KV PRDYKRVL ++K A A + +DA+ A E +
Sbjct: 1483 NYTDSAKGKAVLADWEASIPKFVKVMPRDYKRVLQAIKKALEAGLSGDDALNAAFEENAK 1542
Query: 1657 D 1657
D
Sbjct: 1543 D 1543
|
Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 1 EC: . EC: 4 EC: . EC: 7 EC: . EC: 1 |
| >sp|Q12680|GLT1_YEAST Glutamate synthase [NADH] OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GLT1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1593 bits (4124), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 847/1704 (49%), Positives = 1124/1704 (65%), Gaps = 87/1704 (5%)
Query: 92 RSALSGVPEKPLGLYDPKFDKDSCGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCE 151
+S + +P+K GLYDP ++ D+CGVGFVA GE S K +TDA +LV M HRGA +
Sbjct: 32 KSWANVIPDKR-GLYDPDYEHDACGVGFVANKHGEQSHKIVTDARYLLVNMTHRGAVSSD 90
Query: 152 TNTGDGAGILVALPHDFFKEAAK-NVGFQLPPPGEYAVGMFFLPQSENRRE----ESKKV 206
N GDGAGIL+ +PH+F K K ++ +P G+YAVG F ++E + + +K+
Sbjct: 91 GN-GDGAGILLGIPHEFMKREFKLDLDLDIPEMGKYAVGNVFFKKNEKNNKKNLIKCQKI 149
Query: 207 FTKVAESLGHTVLGWRAVPTDNSGLGNSALQTEPVVEQVFLTPSLRSK------VDFENQ 260
F +A S +VLGWR VP D++ LG+ AL EP + Q L P K F Q
Sbjct: 150 FEDLAASFNLSVLGWRNVPVDSTILGDVALSREPTILQPLLVPLYDEKQPEFNETKFRTQ 209
Query: 261 MYILRRVSMAAIRESLNLEHGGAKDFYICSLSSRTVVYKGQLKPIQMKDYYYADLGNERF 320
+Y+LR+ + +L+ G FY+CSL++ T+VYKGQL P Q+ +YY DL N F
Sbjct: 210 LYLLRKEA--------SLQIGLENWFYVCSLNNTTIVYKGQLTPAQVYNYY-PDLTNAHF 260
Query: 321 TSYMALIHSRFSTNTFPSWDRAQPMRILGHNGEINTLRGNVNWMKAREGLLKCKELGLSK 380
S+MAL+HSRFSTNTFPSWDRAQP+R L HNGEINTLRGN NWM++REG++ K
Sbjct: 261 KSHMALVHSRFSTNTFPSWDRAQPLRWLAHNGEINTLRGNKNWMRSREGVMNSATF---K 317
Query: 381 DEMKKLLPIVDVSSSDSGAFDGVLELLVRAGR-SLPEAVMMMIPEAWQNDKNMDPQRKAL 439
DE+ KL PI++ SDS A D VLELL G SLPEAVMMM+PEA+ K+MD KA
Sbjct: 318 DELDKLYPIIEEGGSDSAALDNVLELLTINGTLSLPEAVMMMVPEAYH--KDMDSDLKAW 375
Query: 440 YEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPP 499
Y++ + LMEPWDGPAL++FTDGRY GA LDRNGLRP R+YIT RVI ASEVGV+ I
Sbjct: 376 YDWAACLMEPWDGPALLTFTDGRYCGAILDRNGLRPCRYYITSDDRVICASEVGVIPIEN 435
Query: 500 EDVLRKGRLNPGMMLLVDFEKRIVVDDEALKQQYSLARPYGEWLQRQKIELKNIVESIHK 559
V++KG+L PG + LVD + +VD + LK Q S + + WL + I+L +++
Sbjct: 436 SLVVQKGKLKPGDLFLVDTQLGEMVDTKKLKSQISKRQDFKSWLSKV-IKLDDLLSKT-- 492
Query: 560 SERVSPGIAGVLPA---SNDDDNMENMGIHGLLAPLKAFGYTVEALEMLMLPMAKDGTEA 616
A ++P S D +++ LLA GYT E + L+ PMA G EA
Sbjct: 493 --------ANLVPKEFISQDSLSLKVQSDPRLLAN----GYTFEQVTFLLTPMALTGKEA 540
Query: 617 LGSMGNDAPLAVMSNREKLTFEYFKQMFAQVTNPPIDPIREKIVTSMECMIGPEGVLTET 676
LGSMGNDAPLA ++ L ++YF+Q+FAQVTNPPIDPIRE V S+EC +GP+G L E
Sbjct: 541 LGSMGNDAPLACLNENPVLLYDYFRQLFAQVTNPPIDPIREANVMSLECYVGPQGNLLEM 600
Query: 677 TEEQCHRLSLKGPLLSIEEMEAIKRMN--YRGWRSKVLDITYSKDHGRRGLEETLDRICA 734
QC RL LK P+L E +A+K + Y W +DIT+ K G G +T+D+I
Sbjct: 601 HSSQCDRLLLKSPILHWNEFQALKNIEAAYPSWSVAEIDITFDKSEGLLGYTDTIDKITK 660
Query: 735 EARDAIKEGYTLLVLSDRAFSSKRVAVSSLLAVGAVHHHLVKNLERTRIGLIVESAEPRE 794
A +AI +G +L+++DR + RV++SSL+A+ +HHHL++N +R+++ LI+E+ E RE
Sbjct: 661 LASEAIDDGKKILIITDRKMGANRVSISSLIAISCIHHHLIRNKQRSQVALILETGEARE 720
Query: 795 VHHFCTLVGFGADAICPYLATEAIWRLQVDGKI-PPKASGEFHSKDELVKKYFKASNYGM 853
+HHFC L+G+G D + PYLA E + R+ +G + + + ++++ Y A + G+
Sbjct: 721 IHHFCVLLGYGCDGVYPYLAMETLVRMNREGLLRNVNNDNDTLEEGQILENYKHAIDAGI 780
Query: 854 MKVLAKMGISTLASYKGAQIFEALGLSSEVIEKCFAGTPSRVDGATFEVLASDALHLHEL 913
+KV++KMGISTLASYKGAQIFEALGL + +++ CF GT SR+ G TFE LA DA LHE
Sbjct: 781 LKVMSKMGISTLASYKGAQIFEALGLDNSIVDLCFTGTSSRIRGVTFEYLAQDAFSLHER 840
Query: 914 AFPTRILPPGSAEAVALPNPGDYHWRKGGEIHLNDPLAIAKLQEAARGNSVAAYKEYSKR 973
+P+R +++V LP G+YH+R GG H+N+P AIA LQ+ R + +++ Y K+
Sbjct: 841 GYPSR---QTISKSVNLPESGEYHFRDGGYKHVNEPTAIASLQDTVRNKNDVSWQLYVKK 897
Query: 974 IQELNKTCNLRGLLKFK-EADVKIPLEEVEPASEIVKRFCTGAMSYGSISLEAHTTLATA 1032
E + C LRGLL+ E V IPLE+VEP +EI +RF +GAMSYGSIS+EAH+TLA A
Sbjct: 898 EMEAIRDCTLRGLLELDFENSVSIPLEQVEPWTEIARRFASGAMSYGSISMEAHSTLAIA 957
Query: 1033 MNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKM 1092
MN++G KSN GEGGE R +G + RSAIKQVAS RFGV+SYYL++ADE+QIK+
Sbjct: 958 MNRLGAKSNCGEGGEDAERSAVQENG--DTMRSAIKQVASARFGVTSYYLSDADEIQIKI 1015
Query: 1093 AQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANP 1152
AQGAKPGEGGELP HKV DIA TR+ST VGLISPPPHHDIYSIEDL QLIYDLK ANP
Sbjct: 1016 AQGAKPGEGGELPAHKVSKDIAKTRHSTPNVGLISPPPHHDIYSIEDLKQLIYDLKCANP 1075
Query: 1153 GARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAET 1212
A ISVKLVSE GVG++ASGV K ADH+L+SGHDGGTGA+RWT +K AGLPWELGLAET
Sbjct: 1076 RAGISVKLVSEVGVGIVASGVAKAKADHILVSGHDGGTGAARWTSVKYAGLPWELGLAET 1135
Query: 1213 HQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNT 1272
HQTLV NDLR ++QTDGQL+TG D+A+A LLGAE F +T PLI +GC+M+R+CH N+
Sbjct: 1136 HQTLVLNDLRRNVVVQTDGQLRTGFDIAVAVLLGAESFTLATVPLIAMGCVMLRRCHLNS 1195
Query: 1273 CPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVDK 1332
C VGIATQDP LR KF G+PEHVINFF+ L ++LR+IM++LGFRTI EM+G S+ L+
Sbjct: 1196 CAVGIATQDPYLRSKFKGQPEHVINFFYYLIQDLRQIMAKLGFRTIDEMVGHSEKLKKRD 1255
Query: 1333 EVTKTNEKLENIDLSLLLRPAADLRPEAAQYCVQKQDHGLDMALDQKLIKLSKAALEKAL 1392
+V N K NIDLS +L PA +RP +KQDH L LD KLI ++ L++ L
Sbjct: 1256 DV---NAKAINIDLSPILTPAHVIRPGVPTKFTKKQDHKLHTRLDNKLIDEAEVTLDRGL 1312
Query: 1393 PVYIETPVCNVNRAVGTMLSHEVTKRYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLE 1452
PV I+ + N +RA+G+ LS+ V+K++ GLP DT+ + + GSAGQS GAFL GI
Sbjct: 1313 PVNIDASIINTDRALGSTLSYRVSKKFGEDGLPKDTVVVNIEGSAGQSFGAFLASGITFI 1372
Query: 1453 LEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFC 1512
L GD+NDYVGKGLSGG IV PPK S F N+++GN YGATSG A+ +G A ERF
Sbjct: 1373 LNGDANDYVGKGLSGGIIVIKPPKDSKFKSDENVIVGNTCFYGATSGTAFISGSAGERFG 1432
Query: 1513 VRNSGARAVVEGV-GDHGCEYMTGGTVVVLGKT-GRNFAAGMSGGIAYVLDVD-GKFRSR 1569
VRNSGA VVE + G++ EYMTGG +VL + N +G +GGIAY L D F +
Sbjct: 1433 VRNSGATIVVERIKGNNAFEYMTGGRAIVLSQMESLNAFSGATGGIAYCLTSDYDDFVGK 1492
Query: 1570 CNPELVDLDKVEEEEDIITLRMMIQQHQRYTNSQLAKEVLADFENLLPKFIKVFPRDYKR 1629
N + V+L+ + + +I ++ +IQ+H YT S LA +L +F + L F+KV P DYK+
Sbjct: 1493 INKDTVELESLCDPVEIAFVKNLIQEHWNYTQSDLAARILGNFNHYLKDFVKVIPTDYKK 1552
Query: 1630 VL-------ASMKVAAAQEAAEDAVKDAEEPDEAD---FKEKDAFEELKKMAIASLNEKS 1679
VL A K A E + + E DE + + A E+ KK +I N+ +
Sbjct: 1553 VLLKEKAEAAKAKAKATSEYLKKFRSNQEVDDEVNTLLIANQKAKEQEKKKSITISNKAT 1612
Query: 1680 NQEAEQVE------PTKRPSRVADAV-KHRGFIAYEREGVQYRDPNIRMNDWKEVMEESK 1732
+E + V+ +K+ + ++ + K RGF+ ++R +RDP R+NDWKE
Sbjct: 1613 LKEPKVVDLEDAVPDSKQLEKNSERIEKTRGFMIHKRRHETHRDPRTRVNDWKEFT---- 1668
Query: 1733 PGPLLKT----QSARCMDCGTPFC 1752
P+ K Q+ARCMDCGTPFC
Sbjct: 1669 -NPITKKDAKYQTARCMDCGTPFC 1691
|
Forms L-glutamate from L-glutamine and 2-oxoglutarate. Represents an alternative pathway to L-glutamate dehydrogenase for the biosynthesis of L-glutamate. Participates with glutamine synthetase in ammonia assimilation processes. The enzyme is specific for NADH, L-glutamine and 2-oxoglutarate. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 1 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|P39812|GLTA_BACSU Glutamate synthase [NADPH] large chain OS=Bacillus subtilis (strain 168) GN=gltA PE=2 SV=3 | Back alignment and function description |
|---|
Score = 1501 bits (3885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 774/1563 (49%), Positives = 1041/1563 (66%), Gaps = 77/1563 (4%)
Query: 101 KPLGLYDPKFDKDSCGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGI 160
K GLY P+F+ D+CG+G A L G+ + + L+ML ++ HRG G + +TGDGAG+
Sbjct: 8 KAQGLYRPEFEHDACGIGLYAHLKGKQTHDIVKQGLKMLCQLDHRGGQGSDPDTGDGAGL 67
Query: 161 LVALPHDFFKEAAKNVGFQLPPPGEYAVGMFFLPQSENRREESKKVFTKVAESLGHTVLG 220
LV +P FF++ KN+ LP Y VGM F Q E+ R++ +K + E G VLG
Sbjct: 68 LVQIPDAFFRKECKNI--NLPEKERYGVGMVFFSQKEDERKKIEKQINALIEQEGQVVLG 125
Query: 221 WRAVPTDNSGLGNSALQTEPVVEQVFLTPS--LRSKVDFENQMYILRRVSMAAIRESLNL 278
WR VP + +G A ++ P V QVF+ S L+ + FE ++Y++R+ + E+ +
Sbjct: 126 WRTVPVNVGKIGTVAQKSCPFVRQVFIGASSDLKDNLSFERKLYVIRKQA-----ENWGV 180
Query: 279 EHGGAKDFYICSLSSRTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPS 338
G DFY SLSS+T+VYKG L P Q+ D +Y+DL +E F S AL+HSRFSTNTFP+
Sbjct: 181 TEG--LDFYFASLSSQTIVYKGLLTPEQV-DAFYSDLQDEAFVSAFALVHSRFSTNTFPT 237
Query: 339 WDRAQPMRILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSG 398
W+RA P R L HNGEINTLRGN+NWM+ARE + G +++ K+LPI++ SDS
Sbjct: 238 WERAHPNRYLVHNGEINTLRGNINWMRAREQQFVSESFG---EDLNKILPILNADGSDSS 294
Query: 399 AFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISF 458
D E V AGR MM+IPE W + +M +++A YEY S+LMEPWDGP ISF
Sbjct: 295 ILDNAFEFFVMAGRKPAHTAMMLIPEPWTENTHMSKEKRAFYEYHSSLMEPWDGPTAISF 354
Query: 459 TDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVDF 518
TDG+ +GA LDRNGLRP R+Y+T +I +SEVGV+++ E+VL K RL PG MLL+D
Sbjct: 355 TDGKQIGAILDRNGLRPARYYVTKDDYIIFSSEVGVIEVEQENVLYKNRLEPGKMLLIDL 414
Query: 519 EKRIVVDDEALKQQYSLARPYGEWLQRQKIELKNIVESIHKSERVSPGIAGVLPASNDDD 578
E+ ++ DE +K Q + PY +WL+ + ++ V+P P S +++
Sbjct: 415 EEGRIISDEEVKTQIATEYPYQKWLEEELVQ-------------VNPD-----PESREEE 456
Query: 579 NMENMGIHGLLAPLKAFGYTVEALEMLMLPMAKDGTEALGSMGNDAPLAVMSNREKLTFE 638
+ LL KAFGYT E ++ ++P+ K+G + LGSMGNDAPLAV+S+R + F
Sbjct: 457 QFSD-----LLTRQKAFGYTYEDIQKYLIPVIKEGKDPLGSMGNDAPLAVLSDRAQSLFN 511
Query: 639 YFKQMFAQVTNPPIDPIREKIVTSMECMIGPEGVLTETTEEQCHRLSLKGPLLSIEEMEA 698
YFKQ+FAQVTNPPID IRE++VTS +G EG L +E R+ L P+LS E+ A
Sbjct: 512 YFKQLFAQVTNPPIDAIREQLVTSTMTWLGAEGDLLHPSERNVRRIKLYTPVLSNEQFYA 571
Query: 699 IKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKR 758
+K + + +S+ +D+ +S+D LE L + +A AI +G +LL+LSD+ + +
Sbjct: 572 LKTIVHPDLKSQKIDVLFSED-----LERGLKDMFTQAEKAISQGVSLLILSDKKMNERL 626
Query: 759 VAVSSLLAVGAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAICPYLATEAI 818
+ LLAV A+H HL++ RT++ +IVES E REVHHF L+G+GADAI PYLA A
Sbjct: 627 TPIPPLLAVSALHQHLIRKGLRTKVSIIVESGEAREVHHFAALIGYGADAINPYLAY-AT 685
Query: 819 WRLQVD-GKIPPKASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEAL 877
++ ++D G++ S +E V KY K+ G++KV++KMGIST+ SY+GAQIFEA+
Sbjct: 686 YKQEIDEGRLDI-------SYEEAVSKYGKSITEGVVKVMSKMGISTVQSYRGAQIFEAV 738
Query: 878 GLSSEVIEKCFAGTPSRVDGATFEVLASDALHLHELAFP---TRILPPGSAEAVALPNPG 934
G+S +VI++ F+GT S++ G + +A +A H A+ ++ L PGS
Sbjct: 739 GISRDVIDRYFSGTASQLGGIDLQTIAEEAQRRHREAYQDDYSKTLEPGS---------- 788
Query: 935 DYHWRKGGEIHLNDPLAIAKLQEAARGNSVAAYKEYSKRIQELNKTCNLRGLLKFKEADV 994
D+ WR GGE H +P I LQ A R N +K+Y+K E + LR L F
Sbjct: 789 DFQWRNGGEHHAFNPKTIHTLQWACRRNDYNLFKQYTKAADE-ERIGFLRNLFAFDGNRK 847
Query: 995 KIPLEEVEPASEIVKRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEP 1054
+ LEEVE A IVKRF TGAMS+GS+S EAH LA AMN++GGKSN+GEGGE P R P
Sbjct: 848 PLKLEEVESAESIVKRFKTGAMSFGSLSKEAHEALAIAMNRLGGKSNSGEGGEDPKRFVP 907
Query: 1055 LSDGSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIA 1114
+G + +RSAIKQ+ASGRFGV S+YL NADELQIKMAQGAKPGEGG+LPG+KV +A
Sbjct: 908 DENG--DDRRSAIKQIASGRFGVKSHYLVNADELQIKMAQGAKPGEGGQLPGNKVYPWVA 965
Query: 1115 VTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVV 1174
R ST GVGLISPPPHHDIYSIEDLAQLI+DLKNAN ARISVKLVS+AGVG IA+GV
Sbjct: 966 DVRGSTPGVGLISPPPHHDIYSIEDLAQLIHDLKNANRDARISVKLVSKAGVGTIAAGVA 1025
Query: 1175 KGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLK 1234
K AD ++ISG+DGGTGAS T IK+ GLPWELGLAE HQTL+ N LR R +L+TDG+L
Sbjct: 1026 KATADVIVISGYDGGTGASPKTSIKHTGLPWELGLAEAHQTLMLNGLRDRVVLETDGKLM 1085
Query: 1235 TGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEH 1294
TGRDV +AALLGAEEFGF+TAPL+ LGC+MMR CH +TCPVG+ATQ+P LR+KF G+P+H
Sbjct: 1086 TGRDVVMAALLGAEEFGFATAPLVVLGCVMMRACHLDTCPVGVATQNPELRKKFMGDPDH 1145
Query: 1295 VINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVDKEVTKTNEKLENIDLSLLLRPAA 1354
++N+ +AEE+RE M+ LGF+T EMIGR+D+L E K + K +DLS LL
Sbjct: 1146 IVNYMLFIAEEVREYMAALGFKTFDEMIGRTDVLHA-SERAKEHWKASQLDLSTLL---- 1200
Query: 1355 DLRPEAAQYCVQKQDHGLDMALD-QKLIKLSKAALEKALPVYIETPVCNVNRAVGTMLSH 1413
+PE + Q+H +D +LD ++ + A+E I + N NR GT+
Sbjct: 1201 -YQPEGVRTFQSPQNHKIDQSLDITTILPAVQEAIESGKEADISIEINNTNRVAGTITGS 1259
Query: 1414 EVTKRYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAY 1473
E++KRY GLP DTI + TGSAGQS GAF+ G+ L L+GDSNDYVGKGLSGGKI+
Sbjct: 1260 EISKRYGEEGLPEDTIKLHFTGSAGQSFGAFVPKGMTLYLDGDSNDYVGKGLSGGKIIVK 1319
Query: 1474 PPKGSLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCVRNSGARAVVEGVGDHGCEYM 1533
+G N++IGNVA YGATSGEAY NG A ERF VRNSG VVEG+GDHGCEYM
Sbjct: 1320 SSEGFNSASDDNVIIGNVAFYGATSGEAYINGRAGERFAVRNSGVNVVVEGIGDHGCEYM 1379
Query: 1534 TGGTVVVLGKTGRNFAAGMSGGIAYVLDVDGK-FRSRCNPELVDLDKVEEEEDIITLRMM 1592
TGG+VVVLG G+NFAAGMSGGIAYVL D K F+ +CN E++ + +E+E++I ++ M
Sbjct: 1380 TGGSVVVLGDVGKNFAAGMSGGIAYVLTEDVKAFKRKCNLEMILFESLEDEKEIQQIKAM 1439
Query: 1593 IQQHQRYTNSQLAKEVLADFENLLPKFIKVFPRDYKRVLASM-KVAAAQEAAEDAVKDAE 1651
+++H YTNSQ A+++L +E+ + KF+KV P++YK++LAS+ + AA + E+A+ A
Sbjct: 1440 LERHTAYTNSQKAEDLLDQWEDSVKKFVKVIPKNYKQMLASIEEQKAAGLSDEEAIMFAF 1499
Query: 1652 EPD 1654
E +
Sbjct: 1500 EAN 1502
|
Bacillus subtilis (strain 168) (taxid: 224308) EC: 1 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 3 |
| >sp|P96218|GLTB_MYCTU Glutamate synthase [NADPH] large chain OS=Mycobacterium tuberculosis GN=gltB PE=1 SV=3 | Back alignment and function description |
|---|
Score = 1477 bits (3823), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 784/1550 (50%), Positives = 1014/1550 (65%), Gaps = 56/1550 (3%)
Query: 101 KPLGLYDPKFDKDSCGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGI 160
K +GLY+P F+ DSCGV V ++ G SR + A+ L+ + HRGA G E +GDGAGI
Sbjct: 4 KRVGLYNPAFEHDSCGVAMVVDMHGRRSRDIVDKAITALLNLEHRGAQGAEPRSGDGAGI 63
Query: 161 LVALPHDFFKEAAKNVGFQLPPPGEYAVGMFFLPQSENRREESKKVFTKVAESLGHTVLG 220
L+ +P +F +EA V F+LP PG YA G+ FLPQS + K+AE+ G VLG
Sbjct: 64 LIQVPDEFLREA---VDFELPAPGSYATGIAFLPQSSKDAAAACAAVQKIAEAEGLQVLG 120
Query: 221 WRAVPTDNSGLGNSALQTEPVVEQVFLTPSLRSKVDFENQMYILRRVSMAAIRESLNLEH 280
WR+VPTD+S LG + P QVFL + S + E + Y++R+ + + +
Sbjct: 121 WRSVPTDDSSLGALSRDAMPTFRQVFLAGA--SGMALERRCYVVRKRAEHELGTKGPGQD 178
Query: 281 G-GAKDFYICSLSSRTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSW 339
G G + Y SLS +T+VYKG L Q+K +Y DL +ER TS + ++HSRFSTNTFPSW
Sbjct: 179 GPGRETVYFPSLSGQTLVYKGMLTTPQLKAFYL-DLQDERLTSALGIVHSRFSTNTFPSW 237
Query: 340 DRAQPMRILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGA 399
A P R + HNGEINT+ GN NWM+ARE L+K G + D ++KL PI +SD+
Sbjct: 238 PLAHPFRRIAHNGEINTVTGNENWMRAREALIKTDIFGSAAD-VEKLFPICTPGASDTAR 296
Query: 400 FDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFT 459
FD VLELL GRSL AV+MMIPEAW+ ++MDP R+A Y+Y ++LMEPWDGPA ++FT
Sbjct: 297 FDEVLELLHLGGRSLAHAVLMMIPEAWERHESMDPARRAFYQYHASLMEPWDGPASMTFT 356
Query: 460 DGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVDFE 519
DG +GA LDRNGLRP R ++T G V+MASE GV+D+ P V+R+ RL PG M LVD
Sbjct: 357 DGTVVGAVLDRNGLRPSRIWVTDDGLVVMASEAGVLDLHPSTVVRRMRLQPGRMFLVDTA 416
Query: 520 KRIVVDDEALKQQYSLARPYGEWLQRQKIELKNIVESIHKSERVSPGIAGVLPASNDDDN 579
+ +V DE +K + PY EWL + L LP D
Sbjct: 417 QGRIVSDEEIKADLAAEHPYQEWLDNGLVPLDE------------------LPEGKD--- 455
Query: 580 MENMGIHGLLAPLKAFGYTVEALEMLMLPMAKDGTEALGSMGNDAPLAVMSNREKLTFEY 639
M H ++ AFGYT E L +L+ PMA+ G E +GSMG D P+AV+S R ++ ++Y
Sbjct: 456 -VRMPHHRIVMRQLAFGYTYEELNLLVAPMARLGAEPIGSMGTDTPVAVLSQRPRMLYDY 514
Query: 640 FKQMFAQVTNPPIDPIREKIVTSMECMIGPEGVLTETTEEQCHRLSLKGPLLSIEEMEAI 699
F Q+FAQVTNPP+D IRE++VTS++ G E L + CH++ L P+L E+ +
Sbjct: 515 FHQLFAQVTNPPLDAIREEVVTSLQGTTGGERDLLNPDQNSCHQIVLPQPILRNHELAKL 574
Query: 700 ------KRMNYR--GWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSD 751
++N R G RSKV+ Y G GL L+ + A AI +G +++LSD
Sbjct: 575 VSLDPNDKVNGRPHGLRSKVIRCLYRVSEGGAGLAAALEEVRGAAAAAIADGARIIILSD 634
Query: 752 RAFSSKRVAVSSLLAVGAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAICP 811
R + + SLLAV VHHHLV+ RT++GL+VES + REVHH LVGFGA AI P
Sbjct: 635 RESDEEMAPIPSLLAVAGVHHHLVRERTRTQVGLVVESGDAREVHHMAALVGFGAAAINP 694
Query: 812 YLATEAIWRLQVDGKIPPKASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGA 871
YL E+I + G I E + + Y KA+ G++KV++KMGISTLASY GA
Sbjct: 695 YLVFESIEDMLDRGVI------EGIDRTAALNNYIKAAGKGVLKVMSKMGISTLASYTGA 748
Query: 872 QIFEALGLSSEVIEKCFAGTPSRVDGATFEVLASDALHLHELAFPTRILPPGSAEAVALP 931
Q+F+A+G+S +V+++ F G G T + +A+D H LA+ R P L
Sbjct: 749 QLFQAVGISEQVLDEYFTGLTCPTGGITLDDIAADVAARHRLAYLDR---PDERAHRELE 805
Query: 932 NPGDYHWRKGGEIHLNDPLAIAKLQEAARGNSVAAYKEYSKRIQELN-KTCNLRGLLKFK 990
G+Y WR+ GE HL +P + KLQ + R +KEY++ + + + + +LRGLLKF+
Sbjct: 806 VGGEYQWRREGEYHLFNPETVFKLQHSTRTGQYKIFKEYTRLVDDQSERMASLRGLLKFR 865
Query: 991 EA-DVKIPLEEVEPASEIVKRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQP 1049
+PL+EVEPASEIVKRF TGAMSYGSIS EAH TLA AMN++G +SN GEGGE
Sbjct: 866 TGVRPPVPLDEVEPASEIVKRFSTGAMSYGSISAEAHETLAIAMNRLGARSNCGEGGEDV 925
Query: 1050 SRMEPLSDGSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKV 1109
R + +G +RSAIKQVAS RFGV+S+YLTN +LQIKMAQGAKPGEGG+LPGHKV
Sbjct: 926 KRFDRDPNGDW--RRSAIKQVASARFGVTSHYLTNCTDLQIKMAQGAKPGEGGQLPGHKV 983
Query: 1110 IGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVI 1169
+A R+ST GVGLISPPPHHDIYSIEDLAQLI+DLKNANP AR+ VKLVSE GVG +
Sbjct: 984 YPWVAEVRHSTPGVGLISPPPHHDIYSIEDLAQLIHDLKNANPSARVHVKLVSENGVGTV 1043
Query: 1170 ASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQT 1229
A+GV K HAD VLISGHDGGTGA+ T +K+AG PWELGLAET QTL+ N LR R ++Q
Sbjct: 1044 AAGVSKAHADVVLISGHDGGTGATPLTSMKHAGAPWELGLAETQQTLLLNGLRDRIVVQV 1103
Query: 1230 DGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFA 1289
DGQLKTGRDV IA LLGAEEFGF+TAPL+ GCIMMR CH +TCPVG+ATQ+P+LRE+F
Sbjct: 1104 DGQLKTGRDVMIATLLGAEEFGFATAPLVVAGCIMMRVCHLDTCPVGVATQNPLLRERFT 1163
Query: 1290 GEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVDKEVTKTNEKLENIDLSLL 1349
G+PE V NFF +AEE+RE ++QLGFRT+ E +G++ L D + + + K +DL+ +
Sbjct: 1164 GKPEFVENFFMFIAEEVREYLAQLGFRTVNEAVGQAGAL--DTTLARAHWKAHKLDLAPV 1221
Query: 1350 LRPAADLRPEAAQYCVQKQDHGLDMALDQKLIKLSKAALEKALPVYIETPVCNVNRAVGT 1409
L YC +QDHGLD ALDQ+LI +S+ AL+ PV T + NVNR VGT
Sbjct: 1222 LHEPESAFMNQDLYCSSRQDHGLDKALDQQLIVMSREALDSGKPVRFSTTIGNVNRTVGT 1281
Query: 1410 MLSHEVTKRYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGK 1469
ML HE+TK Y GLP TI I GSAG S GAF+ GI L + GD+NDYVGKGLSGG+
Sbjct: 1282 MLGHELTKAYGGQGLPDGTIDITFDGSAGNSFGAFVPKGITLRVYGDANDYVGKGLSGGR 1341
Query: 1470 IVAYPPKGSLFD--PKVNIVIGNVALYGATSGEAYFNGMAAERFCVRNSGARAVVEGVGD 1527
IV P + D + NI+ GNV L+GATSGE Y G+ ERF VRNSGA AVVEGVGD
Sbjct: 1342 IVVRPSDDAPQDYVAEDNIIGGNVILFGATSGEVYLRGVVGERFAVRNSGAHAVVEGVGD 1401
Query: 1528 HGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYVLDVDGKFRSRCNPELVDLDKVEEEEDII 1587
HGCEYMTGG VV+LG+TGRNFAAGMSGG+AYV D DG+ + N E+V+L+ + +E+D
Sbjct: 1402 HGCEYMTGGRVVILGRTGRNFAAGMSGGVAYVYDPDGELPANLNSEMVELETL-DEDDAD 1460
Query: 1588 TLRMMIQQHQRYTNSQLAKEVLADFENLLPKFIKVFPRDYKRVLASMKVA 1637
L IQ H T+S + + +L+D+ F+KV PRDYKRVL ++ +A
Sbjct: 1461 WLHGTIQVHVDATDSAVGQRILSDWSGQQRHFVKVMPRDYKRVLQAIALA 1510
|
Mycobacterium tuberculosis (taxid: 1773) EC: 1 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 3 |
| >sp|Q05755|GLTB_AZOBR Glutamate synthase [NADPH] large chain OS=Azospirillum brasilense GN=gltB PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1244 bits (3218), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 675/1528 (44%), Positives = 946/1528 (61%), Gaps = 65/1528 (4%)
Query: 106 YDPKFDKDSCGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILVALP 165
Y+P+ + D+CGVGF+A + G+ R + +E L + HRGA + TGDGAGI VA+P
Sbjct: 28 YNPEDEHDACGVGFIAAIDGKPRRSVVEKGIEALKAVWHRGAVDADGKTGDGAGIHVAVP 87
Query: 166 HDFFKEAAKNVGFQLPPPGEYAVGMFFLPQ-SENRREESKKVFTKVAESLGHTVLGWRAV 224
FFK+ K +G + P + AVG FLP+ S + +E + + + G+ + GWR V
Sbjct: 88 QKFFKDHVKVIGHR-APDNKLAVGQVFLPRISLDAQEACRCIVETEILAFGYYIYGWRQV 146
Query: 225 PTDNSGLGNSALQTEPVVEQVFLTPSLR-SKVDFENQMYILRRVSMAAIR-ESLNLEHGG 282
P + +G A T P +EQ+ + + S FE +YI+RR A++ E +N
Sbjct: 147 PINVDIIGEKANATRPEIEQIIVGNNKGVSDEQFELDLYIIRRRIEKAVKGEQIN----- 201
Query: 283 AKDFYICSLSSRTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRA 342
DFYICSLS+R+++YKG Q+ +Y DL +ERF S A+ H R+STNTFP+W A
Sbjct: 202 --DFYICSLSARSIIYKGMFLAEQLTTFY-PDLLDERFESDFAIYHQRYSTNTFPTWPLA 258
Query: 343 QPMRILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDG 402
QP R+L HNGEINT++GNVNWMKA E ++ G M+ L P++ V SDSG+ D
Sbjct: 259 QPFRMLAHNGEINTVKGNVNWMKAHETRMEHPAFGT---HMQDLKPVIGVGLSDSGSLDT 315
Query: 403 VLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDGR 462
V E++VRAGR+ P MM++P+A + + KAL +Y +++MEPWDGPA ++ TDGR
Sbjct: 316 VFEVMVRAGRTAPMVKMMLVPQALTSSQTTPDNHKALIQYCNSVMEPWDGPAALAMTDGR 375
Query: 463 YLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVDFEKRI 522
++ +DRNGLRP R+ IT G +I SE G+V I V+ KGRL PG M+ VD +
Sbjct: 376 WVVGGMDRNGLRPMRYTITTDGLIIGGSETGMVKIDETQVIEKGRLGPGEMIAVDLQSGK 435
Query: 523 VVDDEALKQQYSLARPYGEWLQRQKIELKNIVESIHKSERVSPGIAGVLPASNDDDNMEN 582
+ D LK + +P+ +W+Q + H E V A + +D D E
Sbjct: 436 LYRDRELKDHLATLKPWDKWVQ----------NTTHLDELVK--TASLKGEPSDMDKAE- 482
Query: 583 MGIHGLLAPLKAFGYTVEALEMLMLPMAKDGTEALGSMGNDAPLAVMSNREKLTFEYFKQ 642
L +AFG T+E +E+++ PM +DG EA+GSMG+D+P+AV+S++ + +F+Q
Sbjct: 483 -----LRRRQQAFGLTMEDMELILHPMVEDGKEAIGSMGDDSPIAVLSDKYRGLHHFFRQ 537
Query: 643 MFAQVTNPPIDPIREKIVTSMECMIGPEGVLTETTEEQCHRLSLKGPLLSIEEMEAIKRM 702
F+QVTNPPID +RE+ V S++ +G G + + E Q L L+ P+L+ E A++
Sbjct: 538 NFSQVTNPPIDSLRERRVMSLKTRLGNLGNILDEDETQTRLLQLESPVLTTAEFRAMR-- 595
Query: 703 NYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRVAVS 762
+Y G + +D T+ D G L + L RI E DA++ G T ++L+D A R A+
Sbjct: 596 DYMGDTAAEIDATFPVDGGPEALRDALRRIRQETEDAVRGGATHVILTDEAMGPARAAIP 655
Query: 763 SLLAVGAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAICPYLATEAI---W 819
++LA GAVH HL+++ RT L V +AE + H+F L+G GA + YLA EAI
Sbjct: 656 AILATGAVHTHLIRSNLRTFTSLNVRTAEGLDTHYFAVLIGVGATTVNAYLAQEAIAERH 715
Query: 820 RLQVDGKIPPKASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEALGL 879
R + G +P + + Y KA + G++K+++KMGIS ++SY+G FEA+GL
Sbjct: 716 RRGLFGSMPLEKG---------MANYKKAIDDGLLKIMSKMGISVISSYRGGGNFEAIGL 766
Query: 880 SSEVIEKCFAGTPSRVDGATFEVLASDALHLHELAFPTRILPPGSAEAVALPNPGDYHWR 939
S ++ + F SR+ G + L H A+ + E VALP G Y +R
Sbjct: 767 SRALVAEHFPAMVSRISGIGLNGIQKKVLEQHATAY--------NEEVVALPVGGFYRFR 818
Query: 940 KGGEIHLNDPLAIAKLQEAARGNSVAAYKEYSKRIQELNKTCNLRGLLKFKEADVKIPLE 999
K G+ H + I LQ+A +S +K+YS+++ + LR LL+ + +P++
Sbjct: 819 KSGDRHGWEGGVIHTLQQAVTNDSYTTFKKYSEQVNK-RPPMQLRDLLELRSTKAPVPVD 877
Query: 1000 EVEPASEIVKRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGS 1059
EVE + I KRF T MS G++S EAH TL AMN+IG KS++GEGGE P+R P +G
Sbjct: 878 EVESITAIRKRFITPGMSMGALSPEAHGTLNVAMNRIGAKSDSGEGGEDPARFRPDKNG- 936
Query: 1060 MNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNS 1119
+ SAIKQVASGRFGV++ YL EL+IK+AQGAKPGEGG+LPG KV IA R+S
Sbjct: 937 -DNWNSAIKQVASGRFGVTAEYLNQCRELEIKVAQGAKPGEGGQLPGFKVTEMIARLRHS 995
Query: 1120 TAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHAD 1179
T GV LISPPPHHDIYSIEDLAQLIYDLK NP A+++VKLVS +G+G IA+GV K +AD
Sbjct: 996 TPGVMLISPPPHHDIYSIEDLAQLIYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANAD 1055
Query: 1180 HVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDV 1239
+LISG+ GGTGAS T IK AGLPWE+GL+E HQ L N LR R L+TDG LKTGRD+
Sbjct: 1056 IILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDI 1115
Query: 1240 AIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFF 1299
IAA+LGAEEFG TA LI +GCIM+R+CH NTCPVG+ QD LR+KF G PE V+N F
Sbjct: 1116 VIAAMLGAEEFGIGTASLIAMGCIMVRQCHSNTCPVGVCVQDDKLRQKFVGTPEKVVNLF 1175
Query: 1300 FMLAEELREIMSQLGFRTITEMIGRSDMLEVDKEVTKTNEKLENIDLSLLLRPAADLRP- 1358
LAEE+REI++ LGFR++ E+IGR+D+L +V++ E L+++DL+ L A + P
Sbjct: 1176 TFLAEEVREILAGLGFRSLNEVIGRTDLLH---QVSRGAEHLDDLDLNPRL---AQVDPG 1229
Query: 1359 EAAQYCVQKQDHGLDMALDQKLIKLSKAALEKALPVYIETPVCNVNRAVGTMLSHEVTKR 1418
E A+YC + + + LD +++ ++ E+ + + N RA+GT LS VT++
Sbjct: 1230 ENARYCTLQGRNEVPDTLDARIVADARPLFEEGEKMQLAYNARNTQRAIGTRLSSMVTRK 1289
Query: 1419 YHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPKGS 1478
+ + GL I I+L G+AGQS+GAF GI LE+ GD+NDYVGKGLSGG IV P S
Sbjct: 1290 FGMFGLQPGHITIRLRGTAGQSLGAFAVQGIKLEVMGDANDYVGKGLSGGTIVVRPTTSS 1349
Query: 1479 LFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCVRNSGARAVVEGVGDHGCEYMTGGTV 1538
+ N +IGN LYGAT+G+ + G A ERF VRNSGA VVEG G +GCEYMTGGT
Sbjct: 1350 PLETNKNTIIGNTVLYGATAGKLFAAGQAGERFAVRNSGATVVVEGCGSNGCEYMTGGTA 1409
Query: 1539 VVLGKTGRNFAAGMSGGIAYVLDVDGKFRSRCNPELVDLDKVEEEEDIITLRMMIQQHQR 1598
V+LG+ G NFAAGM+GG+AYV D+D N E V ++E L+ +I++H
Sbjct: 1410 VILGRVGDNFAAGMTGGMAYVYDLDDSLPLYINDESVIFQRIEVGHYESQLKHLIEEHVT 1469
Query: 1599 YTNSQLAKEVLADFENLLPKFIKVFPRD 1626
T S+ A E+L D+ + KF +V P++
Sbjct: 1470 ETQSRFAAEILNDWAREVTKFWQVVPKE 1497
|
Azospirillum brasilense (taxid: 192) EC: 1 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 3 |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1760 | ||||||
| TAIR|locus:2178461 | 2208 | GLT1 "NADH-dependent glutamate | 0.995 | 0.793 | 0.815 | 0.0 | |
| UNIPROTKB|Q0JKD0 | 2167 | LOC_Os01g48960 "Glutamate synt | 0.874 | 0.710 | 0.805 | 0.0 | |
| WB|WBGene00012326 | 2175 | W07E11.1 [Caenorhabditis elega | 0.856 | 0.692 | 0.509 | 0.0 | |
| ASPGD|ASPL0000027159 | 2126 | gltA [Emericella nidulans (tax | 0.661 | 0.547 | 0.557 | 0.0 | |
| SGD|S000002330 | 2145 | GLT1 "NAD(+)-dependent glutama | 0.777 | 0.637 | 0.480 | 0.0 | |
| POMBASE|SPAPB1E7.07 | 2111 | glt1 "glutamate synthase Glt1 | 0.581 | 0.485 | 0.585 | 0.0 | |
| CGD|CAL0000516 | 2126 | GLT1 [Candida albicans (taxid: | 0.65 | 0.538 | 0.534 | 0.0 | |
| FB|FBgn0036663 | 2114 | CG9674 [Drosophila melanogaste | 0.586 | 0.488 | 0.554 | 0.0 | |
| UNIPROTKB|P55037 | 1550 | gltB "Ferredoxin-dependent glu | 0.581 | 0.66 | 0.559 | 0.0 | |
| TIGR_CMR|CPS_0761 | 1535 | CPS_0761 "putative glutamate s | 0.582 | 0.667 | 0.519 | 0.0 |
| TAIR|locus:2178461 GLT1 "NADH-dependent glutamate synthase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 7481 (2638.5 bits), Expect = 0., P = 0.
Identities = 1433/1757 (81%), Positives = 1556/1757 (88%)
Query: 1 MSATASSSFVQLRANSSLTSL-SRKSGYPQSNIVSPLSSGGXXXXXXXXXXXXSTVL-ER 58
MSA +SSS + LR N L SL S K+ ++ ++ S V+ E
Sbjct: 1 MSAASSSSVLHLRTNQQLLSLRSLKNSTSVASQLAVTSGVSRRRSCTARCSVKKPVIPES 60
Query: 59 RFFGNQLRLAGSERVHLWRSDGPGKSPKLRVVVRSALSGVPEKPLGLYDPKFDKDSCGVG 118
F G ++R +GSE + WRSDGPG+S KLR VV+S+ S VPEKPLGLYDP +DKDSCGVG
Sbjct: 61 PFLGTRVRRSGSETLQFWRSDGPGRSAKLRTVVKSSFSAVPEKPLGLYDPSYDKDSCGVG 120
Query: 119 FVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILVALPHDFFKEAAKNVGF 178
FVAELSGE++RKT+TD+LEML+RM HRGACGCE+NTGDGAGILV LPHDF+ EAA +GF
Sbjct: 121 FVAELSGETTRKTVTDSLEMLIRMTHRGACGCESNTGDGAGILVGLPHDFYAEAATELGF 180
Query: 179 QLPPPGEYAVGMFFLPQSENRREESKKVFTKVAESLGHTVLGWRAVPTDNSGLGNSALQT 238
LP G YAVGMFFLP E+RREESK VFTKVAESLGH+VLGWR VPTDNSGLGNSALQT
Sbjct: 181 VLPSAGNYAVGMFFLPTVESRREESKNVFTKVAESLGHSVLGWRLVPTDNSGLGNSALQT 240
Query: 239 EPVVEQVFLTPSLRSKVDFENQMYILRRVSMAAIRESLNLEHGGAKDFYICSLSSRTVVY 298
EP++ QVFLTP+ +SK DFE QMYILRRVSM AIR +LNL+HG KDFYICSLSSRT+VY
Sbjct: 241 EPIIAQVFLTPTTKSKADFEQQMYILRRVSMVAIRAALNLQHGAMKDFYICSLSSRTIVY 300
Query: 299 KGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRILGHNGEINTLR 358
KGQLKP Q+KDYYYADLG+ERFTSYMAL+HSRFSTNTFPSWDRAQPMR+LGHNGEINTLR
Sbjct: 301 KGQLKPDQLKDYYYADLGSERFTSYMALVHSRFSTNTFPSWDRAQPMRVLGHNGEINTLR 360
Query: 359 GNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAV 418
GNVNWM+AREGLLKC ELGLSK E+KKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAV
Sbjct: 361 GNVNWMRAREGLLKCNELGLSKKELKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAV 420
Query: 419 MMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRF 478
MMMIPEAWQNDKN+DP RK YEY SALMEPWDGPALISFTDGRYLGATLDRNGLRPGRF
Sbjct: 421 MMMIPEAWQNDKNIDPSRKEFYEYLSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRF 480
Query: 479 YITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVDFEKRIVVDDEALKQQYSLARP 538
YITHSGRVIMASEVGVVD+PPEDV+RKGRLNPGMMLLVDFEK IVVDD+ALKQQYSLARP
Sbjct: 481 YITHSGRVIMASEVGVVDVPPEDVMRKGRLNPGMMLLVDFEKHIVVDDDALKQQYSLARP 540
Query: 539 YGEWLQRQKIELKNIVESIHKSERVSPGIAGVLPASNDDDNMENMGIHGLLAPLKAFGYT 598
YGEWL+RQKIELK+I+ES+ ++ER++P I+GV+PASNDDD+ME+MGIHGLL+PLKAFGYT
Sbjct: 541 YGEWLKRQKIELKDIIESVPEAERIAPSISGVVPASNDDDSMESMGIHGLLSPLKAFGYT 600
Query: 599 VEALEMLMLPMAKDGTEALGSMGNDAPLAVMSNREKLTFEYFKQMFAQVTNPPIDPIREK 658
VEALEML+LPMAKDG+EALGSMGND PLAVMSNREKL FEYFKQMFAQVTNPPIDPIREK
Sbjct: 601 VEALEMLLLPMAKDGSEALGSMGNDTPLAVMSNREKLCFEYFKQMFAQVTNPPIDPIREK 660
Query: 659 IVTSMECMIGPEGVLTETTEEQCHRLSLKGPLLSIEEMEAIKRMNYRGWRSKVLDITYSK 718
IVTSMECMIGPEG LTETTEEQCHRLSLKGPLL IEEMEAIK+MNYRGWR+KVLDITY+K
Sbjct: 661 IVTSMECMIGPEGDLTETTEEQCHRLSLKGPLLKIEEMEAIKKMNYRGWRTKVLDITYAK 720
Query: 719 DHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRXXXXXXXXXXXXHHHLVKNL 778
+ G +GLEETLDRIC EA +AIKEGYTLLVLSDRAFS+ R HHHLVK L
Sbjct: 721 ERGTKGLEETLDRICDEANEAIKEGYTLLVLSDRAFSATRVAVSSLMAVGAVHHHLVKTL 780
Query: 779 ERTRIGLIVESAEPREVHHFCTLVGFGADAICPYLATEAIWRLQVDGKIPPKASGEFHSK 838
RT++GL+VESAEPREVHHFCTLVGFGADAICPYLA EA++RLQVDGKIPPK++GEFHSK
Sbjct: 781 ARTQVGLVVESAEPREVHHFCTLVGFGADAICPYLAVEAVYRLQVDGKIPPKSNGEFHSK 840
Query: 839 DELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEALGLSSEVIEKCFAGTPSRVDGA 898
+ELVKKY+KASNYGMMKVLAKMGISTLASYKGAQIFEALGLSSEVI+KCFAGTPSRV+GA
Sbjct: 841 EELVKKYYKASNYGMMKVLAKMGISTLASYKGAQIFEALGLSSEVIQKCFAGTPSRVEGA 900
Query: 899 TFEVLASDALHLHELAFPTRILPPGSAEAVALPNPGDYHWRKGGEIHLNDPLAIAKLQEA 958
TFE+LA D L LHELAFPTR PGSAEA AL NPG+YHWRK GEIHLNDPLAIAKLQEA
Sbjct: 901 TFEMLARDGLQLHELAFPTRGYAPGSAEASALTNPGNYHWRKNGEIHLNDPLAIAKLQEA 960
Query: 959 ARGNSVAAYKEYSKRIQELNKTCNLRGLLKFKEADVKIPLEEVEPASEIVKRFCTGAMSY 1018
AR NSVAAYKEYSKRI ELNK NLRGL+KFK+ADVKIPL+EVEPASEIVKRFCTGAMSY
Sbjct: 961 ARTNSVAAYKEYSKRINELNKQSNLRGLMKFKDADVKIPLDEVEPASEIVKRFCTGAMSY 1020
Query: 1019 GSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRSAIKQVASGRFGVS 1078
GSISLEAHTTLA AMNK+GGKSNTGEGGE PSRMEPL+DGS NPKRS+IKQ+ASGRFGVS
Sbjct: 1021 GSISLEAHTTLAMAMNKLGGKSNTGEGGELPSRMEPLADGSRNPKRSSIKQIASGRFGVS 1080
Query: 1079 SYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHHDIYSIE 1138
SYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIA+TRNSTAGVGLISPPPHHDIYSIE
Sbjct: 1081 SYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAITRNSTAGVGLISPPPHHDIYSIE 1140
Query: 1139 DLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGI 1198
DLAQLI+DLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLI+GHDGGTGASRWTGI
Sbjct: 1141 DLAQLIHDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLIAGHDGGTGASRWTGI 1200
Query: 1199 KNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258
KNAGLPWELGLAETHQTLVANDLRGRT+LQTDGQLKTGRDVA+AALLGAEEFGFSTAPLI
Sbjct: 1201 KNAGLPWELGLAETHQTLVANDLRGRTVLQTDGQLKTGRDVAVAALLGAEEFGFSTAPLI 1260
Query: 1259 TLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTI 1318
TLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEE+REIMS LGFRT+
Sbjct: 1261 TLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEEVREIMSGLGFRTV 1320
Query: 1319 TEMIGRSDMLEVDKEVTKTNEKLENIDLSLLLRPAADLRPEAAQYCVQKQDHGLDMALDQ 1378
TEMIGR+DMLE+D+EV K N+KLENIDLSLLLRPAA++RP AAQYCVQKQDHGLDMALDQ
Sbjct: 1321 TEMIGRADMLELDREVVKNNDKLENIDLSLLLRPAAEIRPGAAQYCVQKQDHGLDMALDQ 1380
Query: 1379 KLIKLSKAALEKALPVYIETPVCNVNRAVGTMLSHEVTKRYHLVGLPADTIHIKLTGSAG 1438
+LI LSK+ALEK+LPVYIETP+CNVNRAVGTMLSHEVTKRYHL GLP DTIHIK TGSAG
Sbjct: 1381 ELIALSKSALEKSLPVYIETPICNVNRAVGTMLSHEVTKRYHLTGLPKDTIHIKFTGSAG 1440
Query: 1439 QSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATS 1498
QS+GAFLCPGI+LELEGDSNDYVGKGLSGGK+V YPPKGS FDPK NIVIGNVALYGATS
Sbjct: 1441 QSLGAFLCPGIMLELEGDSNDYVGKGLSGGKVVVYPPKGSSFDPKENIVIGNVALYGATS 1500
Query: 1499 GEAYFNGMAAERFCVRNSGARAVVEGVGDHGCEYMXXXXXXXXXXXXRNFAAGMSGGIAY 1558
GEAYFNGMAAERF VRNSGA+AVVEG+GDHGCEYM RNFAAGMSGGIAY
Sbjct: 1501 GEAYFNGMAAERFSVRNSGAKAVVEGLGDHGCEYMTGGTVVVLGKTGRNFAAGMSGGIAY 1560
Query: 1559 VLDVDGKFRSRCNPXXXXXXXXXXXXXIITLRMMIQQHQRYTNSQLAKEVLADFENLLPK 1618
VLDVDGKF +RCN +TL+MMIQQHQR+TNSQLA+EVLADFENLLPK
Sbjct: 1561 VLDVDGKFNTRCNLELVDLDKVEDEEDKMTLKMMIQQHQRHTNSQLAQEVLADFENLLPK 1620
Query: 1619 FIKVFPRDYKRVLASMK-VXXXXXXXXXXXXXXXXXXXXXFKEKDAFEELKKMAIASLNE 1677
FIKVFPRDYKRVL++MK +EKDAF ELK MA AS E
Sbjct: 1621 FIKVFPRDYKRVLSAMKHEEVSKQAIERASEEADETEEKELEEKDAFAELKNMAAASSKE 1680
Query: 1678 KSNQEAEQVEPTKRPSRVADAVKHRGFIAYEREGVQYRDPNIRMNDWKEVMEESKPGPLL 1737
+ + E RPS+V +AVK+ GFIAYEREGV+YRDPN+R+NDW EVMEESKPGPLL
Sbjct: 1681 EMSGNGVAAEA--RPSKVDNAVKNGGFIAYEREGVKYRDPNVRLNDWNEVMEESKPGPLL 1738
Query: 1738 KTQSARCMDCGTPFCHQ 1754
TQSARCMDCGTPFCHQ
Sbjct: 1739 TTQSARCMDCGTPFCHQ 1755
|
|
| UNIPROTKB|Q0JKD0 LOC_Os01g48960 "Glutamate synthase 1 [NADH], chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 6522 (2300.9 bits), Expect = 0., Sum P(2) = 0.
Identities = 1241/1541 (80%), Positives = 1364/1541 (88%)
Query: 95 LSGVPEKPLGLYDPKFDKDSCGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNT 154
LS +PE +GLYDP ++DSCGVGFVAELSG+ R T+ DALEML RMAHRGACGCE NT
Sbjct: 80 LSTLPESSIGLYDPSRERDSCGVGFVAELSGDYKRATVNDALEMLERMAHRGACGCEKNT 139
Query: 155 GDGAGILVALPHDFFKEAAKNVGFQLPPPGEYAVGMFFLPQSENRREESKKVFTKVAESL 214
GDGAGILVALPH+FF+E K+ GF+LP PGEYAVGM FLP E RRE SK F KVAESL
Sbjct: 140 GDGAGILVALPHNFFREVTKDAGFELPQPGEYAVGMVFLPIDEKRRERSKAEFQKVAESL 199
Query: 215 GHTVLGWRAVPTDNSGLGNSALQTEPVVEQVFLTPSLRSKVDFENQMYILRRVSMAAIRE 274
GH +LGWR VPTDNS LG SALQTEPV+EQVFLT S S+ DFE Q+YILRR+S+ +IR
Sbjct: 200 GHVILGWRRVPTDNSDLGESALQTEPVIEQVFLTKSSSSEADFEQQLYILRRLSILSIRA 259
Query: 275 SLNLEHGGAKDFYICSLSSRTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTN 334
+LNL GG +DFY+CSLSSRT+VYKGQLKP Q+K YYYADLG+E FTSYMAL+HSRFSTN
Sbjct: 260 ALNLRRGGKRDFYMCSLSSRTIVYKGQLKPCQLKGYYYADLGHENFTSYMALVHSRFSTN 319
Query: 335 TFPSWDRAQPMRILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSS 394
TFPSWDRAQPMR+LGHNGEINTL+GN NWMKAREGLL+C++LGL+KD+ K+LPIVD +S
Sbjct: 320 TFPSWDRAQPMRVLGHNGEINTLKGNKNWMKAREGLLECEKLGLTKDQFSKILPIVDATS 379
Query: 395 SDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPA 454
SDSGAFDGVLELL+R GRSLPEAVMMMIPEAWQND NM+P++KALYE+ SALMEPWDGPA
Sbjct: 380 SDSGAFDGVLELLIRGGRSLPEAVMMMIPEAWQNDVNMEPEKKALYEFLSALMEPWDGPA 439
Query: 455 LISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMML 514
LISFTDGRYLGATLDRNGLRPGRFY+THSGRV+M SEVGVVD+P +DVLRKGRLNPGMML
Sbjct: 440 LISFTDGRYLGATLDRNGLRPGRFYVTHSGRVVMGSEVGVVDVPSKDVLRKGRLNPGMML 499
Query: 515 LVDFEKRIVVDDEALKQQYSLARPYGEWLQRQKIELKNIVESIHKSERVSPGIAGVLPAS 574
LVDFE VVDDEALK QYS A PYGEWL+RQKI LK+IVES+ ++ERV+PGI+G L
Sbjct: 500 LVDFENHTVVDDEALKAQYSKAHPYGEWLKRQKIYLKDIVESVPETERVAPGISGSLTQK 559
Query: 575 NDDDNMENMGIHGLLAPLKAFGYTVEALEMLMLPMAKDGTEALGSMGNDAPLAVMSNREK 634
N+ E+ G++G++ PLKAFGYTVEALEML+LPMAKDG EALGSMGND PLAVMSNREK
Sbjct: 560 NE--KKEHAGVNGIVTPLKAFGYTVEALEMLLLPMAKDGVEALGSMGNDTPLAVMSNREK 617
Query: 635 LTFEYFKQMFAQVTNPPIDPIREKIVTSMECMIGPEGVLTETTEEQCHRLSLKGPLLSIE 694
LTFEYFKQMFAQVTNPPIDPIREKIVTSMECMIGPEG L ETTE+QC+RL+L+GPL+SI+
Sbjct: 618 LTFEYFKQMFAQVTNPPIDPIREKIVTSMECMIGPEGDLLETTEKQCNRLALEGPLVSID 677
Query: 695 EMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAF 754
EMEAIK+MNYRGWRSKVLDITY K GR+GLEETLDRIC EAR AIK+GYT+LVLSDR F
Sbjct: 678 EMEAIKKMNYRGWRSKVLDITYPKKSGRKGLEETLDRICTEARGAIKKGYTVLVLSDRGF 737
Query: 755 SSKRXXXXXXXXXXXXHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAICPYLA 814
SS R H HLV NLERTR+GL+VESAEPREVHHFCTLVGFGADA+CPYLA
Sbjct: 738 SSDRVAVSSLLAVGAVHQHLVANLERTRVGLLVESAEPREVHHFCTLVGFGADAVCPYLA 797
Query: 815 TEAIWRLQVDGKIPPKASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIF 874
EAIW LQ DGKIPP G+ +SK+ELVKKYF ASNYGMMKVLAKMGISTLASYKGAQIF
Sbjct: 798 IEAIWCLQNDGKIPPNGDGKPYSKEELVKKYFYASNYGMMKVLAKMGISTLASYKGAQIF 857
Query: 875 EALGLSSEVIEKCFAGTPSRVDGATFEVLASDALHLHELAFPTRILPPGSAEAVALPNPG 934
EALGLSSEVI KCF GTPSR++GATFE+LA DAL LHELAFP+R PPGSA+A ALPNPG
Sbjct: 858 EALGLSSEVIRKCFDGTPSRIEGATFEMLARDALRLHELAFPSRAPPPGSADAKALPNPG 917
Query: 935 DYHWRKGGEIHLNDPLAIAKLQEAARGNSVAAYKEYSKRIQELNKTCNLRGLLKFKEADV 994
DYHWRK GE+HLNDPLA+AKLQEAAR NS AAYKEYS+RIQELNKTCNLRG+LKFK+
Sbjct: 918 DYHWRKNGEVHLNDPLAMAKLQEAARVNSRAAYKEYSRRIQELNKTCNLRGMLKFKDTAD 977
Query: 995 KIPLEEVEPASEIVKRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEP 1054
I ++EVEPASEIVKRF TGAMSYGSISLEAHT LA AMNK+GGKSNTGEGGEQPSRMEP
Sbjct: 978 MISVDEVEPASEIVKRFVTGAMSYGSISLEAHTALAMAMNKLGGKSNTGEGGEQPSRMEP 1037
Query: 1055 LSDGSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIA 1114
L++GSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIA
Sbjct: 1038 LANGSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIA 1097
Query: 1115 VTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVV 1174
VTR+STAGVGLISPPPHHDIYSIEDLAQLI+DLKN+NP ARISVKLVSEAGVGV+ASGVV
Sbjct: 1098 VTRHSTAGVGLISPPPHHDIYSIEDLAQLIHDLKNSNPRARISVKLVSEAGVGVVASGVV 1157
Query: 1175 KGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLK 1234
KGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVAN LRGR ILQTDGQLK
Sbjct: 1158 KGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANGLRGRAILQTDGQLK 1217
Query: 1235 TGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEH 1294
TG+DVA+A LLGAEEFGFSTAPLITLGCIMMRKCH NTCPVGIATQDPVLREKFAGEPEH
Sbjct: 1218 TGKDVAVACLLGAEEFGFSTAPLITLGCIMMRKCHTNTCPVGIATQDPVLREKFAGEPEH 1277
Query: 1295 VINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVDKEVTKTNEKLENIDLSLLLRPAA 1354
VINFFFMLAEELREIMSQLGFRTITEM+GRSDMLEVD EV K+NEKLENIDLSL+L+PAA
Sbjct: 1278 VINFFFMLAEELREIMSQLGFRTITEMVGRSDMLEVDPEVVKSNEKLENIDLSLILKPAA 1337
Query: 1355 DLRPEAAQYCVQKQDHGLDMALDQKLIKLSKAALEKALPVYIETPVCNVNRAVGTMLSHE 1414
++RP AAQYCV+KQDHGLDMALD KLI LSKAALEK + V+IETP+ N NRAVGTMLSHE
Sbjct: 1338 EIRPGAAQYCVEKQDHGLDMALDNKLIALSKAALEKEVRVFIETPIQNTNRAVGTMLSHE 1397
Query: 1415 VTKRYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYP 1474
VTKRYH+ GLPA TIH+KLTGSAGQS+GAFLCPGI LELEGDSNDYVGKGLSGGKIV YP
Sbjct: 1398 VTKRYHMKGLPAGTIHVKLTGSAGQSLGAFLCPGITLELEGDSNDYVGKGLSGGKIVVYP 1457
Query: 1475 PKGSLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCVRNSGARAVVEGVGDHGCEYMX 1534
P+ S F P+ NIVIGNVALYGAT GEAYFNGMAAERFCVRNSGA+AVVEG+GDHGCEYM
Sbjct: 1458 PRDSTFIPEDNIVIGNVALYGATIGEAYFNGMAAERFCVRNSGAQAVVEGIGDHGCEYMT 1517
Query: 1535 XXXXXXXXXXXRNFAAGMSGGIAYVLDVDGKFRSRCNPXXXXXXXXXXXXXIITLRMMIQ 1594
RNFAAGMSGGIAYV D+DGKF RCN I TL+MMI+
Sbjct: 1518 GGTVVILGKTGRNFAAGMSGGIAYVYDIDGKFSVRCNHELVDLYHVEEEEDITTLKMMIE 1577
Query: 1595 QHQRYTNSQLAKEVLADFENLLPKFIKVFPRDYKRVLASMK 1635
QH+ T S +A+++L++F+ LLPKF+KVFPRDYKRVL +MK
Sbjct: 1578 QHRLNTGSVVARDILSNFDTLLPKFVKVFPRDYKRVLDNMK 1618
|
|
| WB|WBGene00012326 W07E11.1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 3828 (1352.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 786/1544 (50%), Positives = 1038/1544 (67%)
Query: 104 GLYDPKFDKDSCGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILVA 163
GL+ P+ ++D+CGVGFV + G +S K ++DA ML RMAHRGACGC+ ++GDGAG+L A
Sbjct: 16 GLWLPQLERDACGVGFVCSIKGTTSSKIMSDARTMLERMAHRGACGCDNDSGDGAGVLTA 75
Query: 164 LPHDFFKEAAKNV-GFQLPPPGEYAVGMFFLPQSENRREESKKVFTKVAESLGHTVLGWR 222
+P D ++++ K G LPP G+YA G+ FL ++E+ ++ +K+ F +A + G V+ WR
Sbjct: 76 IPDDLYRKSVKEQDGSDLPPLGQYATGILFL-EAESYKQ-AKEAFQDLARACGLRVVAWR 133
Query: 223 AVPTDNSGLGNSALQTEPVVEQVFLTPSLRSK--VDFENQMYILRRVSMAAIRESLNLEH 280
+ T+ +G A +TEP++ QVF++ FE +Y+LR+ ++ ++ + +E
Sbjct: 134 KLGTNRECIGEEAKKTEPLIRQVFVSADYAESDPAKFERSVYLLRKQAVNSMTKQ-EIE- 191
Query: 281 GGAKDFYICSLSSRTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWD 340
Y+CSLS+ T+VYKGQ Q+ +Y DL N + +++AL+HSRFSTNTFPSW+
Sbjct: 192 -----CYVCSLSTSTIVYKGQFNTHQLFKFY-DDLTNPEYQTHLALVHSRFSTNTFPSWN 245
Query: 341 RAQPMRILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAF 400
RAQP RIL HNGEINTLRGN+N M+AREG++K K +D+++KL PIV+ +DSG
Sbjct: 246 RAQPNRILAHNGEINTLRGNINLMRAREGVMKSKYY---RDDLQKLFPIVEEGLTDSGCL 302
Query: 401 DGVLELLVRAG-RSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFT 459
D V+E LVRAG RSLPEA M M+PEAW+ D +M ++K Y + + MEPWDGPAL++F+
Sbjct: 303 DNVMEFLVRAGGRSLPEAAMTMVPEAWEKDDDMSTEKKHFYRWAAMSMEPWDGPALLAFS 362
Query: 460 DGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVDFE 519
DGRY+GA LDRNGLRP R+Y+T + ++SEVGV DIP E V++K RL PG MLLVD
Sbjct: 363 DGRYIGAILDRNGLRPARYYLTDDDHLYLSSEVGVNDIPIEKVVKKDRLKPGRMLLVDTH 422
Query: 520 KRIVVDDEALKQQYSLARPYGEWLQRQKIELKNI-VESIHKSERVSPGIAGVLPASNDDD 578
+ + DE LK + +L+RP+ + L +I L I + + V+ L +
Sbjct: 423 LKKIELDEDLKTRIALSRPHKQ-LSASRIYLDLIRKDDVLSHGAVTNEYLNRLHLEQVNP 481
Query: 579 N-MENMGIH-GLLAPLKAFGYTVEALEMLMLPMAKDGTEALGSMGNDAPLAVMSNREKLT 636
M+ +H L + YT + +L++PM K+ EALGSMGNDA LA +S+ L
Sbjct: 482 GLMKKKDVHLDSDRRLALYAYTHDTFSLLLVPMIKEKKEALGSMGNDAALACLSDYSPLL 541
Query: 637 FEYFKQMFAQVTNPPIDPIREKIVTSMECMIGPEGVLTETTEEQCHRLSLKGPLLSIEEM 696
F YF+Q+FAQVTNPPIDP RE+IV S+ C IGPE + E E RL L+ P+LS+ +M
Sbjct: 542 FSYFQQLFAQVTNPPIDPFREQIVMSLRCPIGPESNMLEPDTELASRLILEQPVLSMVDM 601
Query: 697 EAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSS 756
E IKR Y+GW++K +DITY +G +GL LD +C A A +GY +LVLSDR SS
Sbjct: 602 EVIKRTMYKGWKAKEIDITYPVKYGVKGLVPGLDAMCCVACTAALDGYQILVLSDRNASS 661
Query: 757 KRXXXXXXXXXXXXHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAICPYLATE 816
+R H L+++ R ++ ++VE+ E R VH FC L+GFGADAICPY+ E
Sbjct: 662 ERVPIPSLLAVGAIHQCLIRHRLRMKVAIVVETGEARVVHDFCVLLGFGADAICPYMVYE 721
Query: 817 AIWRLQVDGKIPPKASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEA 876
+ RL+ G + + + D++ + Y + G+ KV+AKMGISTL SYK AQIFE
Sbjct: 722 TMHRLRNLGLLDKELND-----DQVYQGYRQGVERGIFKVMAKMGISTLHSYKHAQIFEI 776
Query: 877 LGLSSEVIEKCFAGTPSRVDGATFEVLASDALHLHELAFPTRILPPGSAEAVALPNPGDY 936
+GL+ +V++ CF T SR+ GATFE+LA++AL H AFPT ++ L G +
Sbjct: 777 VGLAKDVVDMCFKNTVSRLGGATFEILAAEALKRHRSAFPTTS-DASFGDSKTLVASGTF 835
Query: 937 HWRKGGEIHLNDPLAIAKLQEAARGNSVAAYKEYSKRIQELNKTCNLRGLLKFKEAD-VK 995
HWR GGE H+N+PLAIAKLQ AAR N+ ++EYS + C LRG L+ K + ++
Sbjct: 836 HWRAGGEKHINEPLAIAKLQAAARLNNSKTFQEYSLASNMAQRWCTLRGQLEIKTSKKIQ 895
Query: 996 IPLEEVEPASEIVKRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPL 1055
IPL EVEPASEIVK+F TGAMS+GSIS E HT LA AMN+IGGKSNTGEGGE+P R
Sbjct: 896 IPLSEVEPASEIVKKFVTGAMSFGSISWETHTALAIAMNRIGGKSNTGEGGEKPERYRKD 955
Query: 1056 SDGSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAV 1115
D + N RSAIKQVAS RFGV+S YL NADELQIKMAQGAKPGEGGELPGHKV DIA
Sbjct: 956 QDPNQN-LRSAIKQVASARFGVTSSYLANADELQIKMAQGAKPGEGGELPGHKVTQDIAD 1014
Query: 1116 TRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVK 1175
TR STAGVGLISPPPHHDIYSIEDLAQLIYDLK ANP AR+SVKLVSEAGVG++A+GV K
Sbjct: 1015 TRKSTAGVGLISPPPHHDIYSIEDLAQLIYDLKCANPVARVSVKLVSEAGVGIVAAGVAK 1074
Query: 1176 GHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKT 1235
G+ADH+ +SGHDGGTGAS WTGIK+AGLPWELG+AETHQ L N+LR R +LQ DGQ++T
Sbjct: 1075 GNADHITVSGHDGGTGASSWTGIKHAGLPWELGVAETHQVLTMNNLRSRVVLQADGQIRT 1134
Query: 1236 GRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHV 1295
GRDV IAALLGA+EFG STAPLI LGC MMRKCH NTCPVG+ATQDPVLR KF G+PEHV
Sbjct: 1135 GRDVMIAALLGADEFGMSTAPLIVLGCTMMRKCHLNTCPVGVATQDPVLRAKFDGKPEHV 1194
Query: 1296 INFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVDKEVTKTNEKLENIDLSLLLRPAAD 1355
+N+ FM+AEE+R +S+LG R + + +GR+D+L N+K ++ +L+ A
Sbjct: 1195 VNYMFMVAEEVRYFLSKLGLRKLEDAVGRTDLLYASSN--PVNKKATMLEFGSILKNAQQ 1252
Query: 1356 LRPEAA-QYCVQKQDHGLDMALDQKLIKLSKAALEKA--LPVYIETPVCNVNRAVGTMLS 1412
+ P + + KQ L AL+ +++ A V+ + N++R GT +S
Sbjct: 1253 MFPNISIKGGSVKQVIELG-ALETRMLTELDGVFNDAGEHKVFENEYITNIDRTFGTRIS 1311
Query: 1413 HEVTKRYHLVGLPAD-TIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIV 1471
+E++KRY +GL +I I L G AGQS AFL G+ + LEGD+NDYVGK LSGGKIV
Sbjct: 1312 YEISKRYGELGLEGSRSITIGLKGHAGQSFCAFLAKGVSVTLEGDANDYVGKCLSGGKIV 1371
Query: 1472 AYPPKGSLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCVRNSGARAVVEGVGDHGCE 1531
+PPK + + + N VIGNVALYGATSG+ +F G+A ERF VRNSGA +VE VGDHGCE
Sbjct: 1372 IFPPKAASYKSEENSVIGNVALYGATSGDCWFRGVAGERFAVRNSGANVIVEAVGDHGCE 1431
Query: 1532 YMXXXXXXXXXXXXRNFAAGMSGGIAYVLDVDGKFRSRCNPXXXXXXXXXXXXXIITLRM 1591
YM RNFAA MSGGIAY+ + F SR +I ++
Sbjct: 1432 YMTGGRVIVLGSIGRNFAAAMSGGIAYLFAQEDNF-SRLINAATVDLDDASTEDLIFVKA 1490
Query: 1592 MIQQHQRYTNSQLAKEVLADFENLLPKFIKVFPRDYKRVLASMK 1635
I++ + T S+L + +L +++ K IKVFPRDYKRVLA +
Sbjct: 1491 KIEEFVKLTGSELGQRILTNWQKEHQKIIKVFPRDYKRVLAEQE 1534
|
|
| ASPGD|ASPL0000027159 gltA [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 3309 (1169.9 bits), Expect = 0., P = 0.
Identities = 667/1196 (55%), Positives = 828/1196 (69%)
Query: 565 PGIAGVLPASNDD--DNMENMGIHGLLAP-LKAFGYTVEALEMLMLPMAKDGTEALGSMG 621
P I L N D +++N + P LKAFGY+ E + +L+ PM D EALGSMG
Sbjct: 494 PAITEKLVEQNMDLRHDLDNTTVQN--DPRLKAFGYSFEQVTLLLGPMGADSKEALGSMG 551
Query: 622 NDAPLAVMSNREKLTFEYFKQMFAQVTNPPIDPIREKIVTSMECMIGPEGVLTETTEEQC 681
NDAPLA ++ + +L +EYF+Q+FAQVTNPPIDPIRE +V S+EC +GP+G L E QC
Sbjct: 552 NDAPLACIAKQPRLLYEYFRQLFAQVTNPPIDPIREAVVMSLECYVGPQGNLLEMDPSQC 611
Query: 682 HRLSLKGPLLSIEEMEAIKRMN--YRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDA 739
RL L P+LSI E A+K +N ++ W +++DIT+ K G G E LDRIC A +A
Sbjct: 612 RRLLLPSPILSIPEFNALKNINTVHKDWTVRLIDITFEKKKGVPGYIEALDRICDAATEA 671
Query: 740 IKEGYTLLVLSDRAFSSKRXXXXXXXXXXXXHHHLVKNLERTRIGLIVESAEPREVHHFC 799
I++G +L+LSDRA S+ R HHHLV+N R+ LIVE+AE REVHH C
Sbjct: 672 IQQGDKILILSDRATSADRVPVSALLATGLVHHHLVRNKWRSLAALIVETAEAREVHHMC 731
Query: 800 TLVGFGADAICPYLATEAIWRLQVDGKIPPKASGEFHSKDELVKKYFKAS-NYGMMKVLA 858
LVG+GAD I PYLA E I ++ + I + S DE V + +KAS + G++KV++
Sbjct: 732 VLVGYGADGINPYLAMECILKMNREKLIRKELS------DEKVIENYKASCDGGILKVMS 785
Query: 859 KMGISTLASYKGAQIFEALGLSSEVIEKCFAGTPSRVDGATFEVLASDALHLHELAFPTR 918
KMGISTLASYKGAQIFEALG+ VI++CF GT SR+ G FE++A DA +HE +P+R
Sbjct: 786 KMGISTLASYKGAQIFEALGIDDSVIDRCFTGTASRIRGMNFELIAQDAFAIHERGYPSR 845
Query: 919 ILPPGSAEAVALPNPGDYHWRKGGEIHLNDPLAIAKLQEAARGNSVAAYKEYSKRIQELN 978
+ + L G+YHWR GGE H+NDP++IA +Q+A R + +Y+ Y+K E
Sbjct: 846 AI----VDIPGLNESGEYHWRDGGEDHINDPVSIANIQDAVRTKNDKSYEAYAKAAHEQI 901
Query: 979 KTCNLRGLLKFK-EADVKIPLEEVEPASEIVKRFCTGAMSYGSISLEAHTTLATAMNKIG 1037
K C LRG+L+F + IP+++VEP +EIV+RF TGAMSYGSIS+E+H+TLA AMN++G
Sbjct: 902 KNCTLRGMLEFDFDQRTPIPIDQVEPWTEIVRRFVTGAMSYGSISMESHSTLAVAMNRLG 961
Query: 1038 GKSNTGEGGEQPSRMEPLSDGSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAK 1097
GKSNTGEGGE P R + + +G + RSAIKQ+ASGRFGV+S+YL +ADELQIKMAQGAK
Sbjct: 962 GKSNTGEGGEDPERSKRMENG--DTMRSAIKQIASGRFGVTSHYLADADELQIKMAQGAK 1019
Query: 1098 PGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARIS 1157
PGEGGELPGHKV+G IA TR ST GVGLISPPPHHDIYSIEDL QLIYDLK +NP AR+S
Sbjct: 1020 PGEGGELPGHKVVGPIAHTRYSTPGVGLISPPPHHDIYSIEDLKQLIYDLKCSNPRARVS 1079
Query: 1158 VKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLV 1217
VKLVSE GVG++ASGV K ADH+LISGHDGGTGASRWTGIK AGLPWELGLAETHQTLV
Sbjct: 1080 VKLVSEVGVGIVASGVAKAKADHILISGHDGGTGASRWTGIKYAGLPWELGLAETHQTLV 1139
Query: 1218 ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGI 1277
NDLRGR I+QTDGQ++TGRDVA+A LLGAEEFGF+T PLI +GCIMMRKCH NTCPVGI
Sbjct: 1140 LNDLRGRVIVQTDGQIRTGRDVAVACLLGAEEFGFATTPLIAMGCIMMRKCHLNTCPVGI 1199
Query: 1278 ATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVDKEVTKT 1337
ATQDP LR+KF G+PEHVINFF+ +A ELR IM++LG RTI EM+GR+++L+V ++T
Sbjct: 1200 ATQDPELRKKFEGQPEHVINFFYYIANELRAIMAKLGIRTINEMVGRAELLKVRDDLT-- 1257
Query: 1338 NEKLENIDLSLLLRPAADLRPEAAQYCVQKQDHGLDMALDQKLIKLSKAALEKALPVYIE 1397
N K ENIDLSL+L PA LRP A Y V+KQDH L LD KLI S+ ALEK LP +E
Sbjct: 1258 NPKQENIDLSLILTPAHSLRPGVATYNVRKQDHRLHTRLDNKLIAESELALEKGLPCRVE 1317
Query: 1398 TPVCNVNRAVGTMLSHEVTKRYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDS 1457
V N +RA+G LS++V++RY GLP DTIH + GSAGQS GA+L PGI LELEGD+
Sbjct: 1318 CDVVNTDRALGATLSYQVSRRYGGEGLPQDTIHSNIKGSAGQSFGAYLAPGITLELEGDA 1377
Query: 1458 NDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCVRNSG 1517
NDYVGKGLSGG+++ YPP+G+ F + N+++GN LYGAT G +F G+AAERF VRNSG
Sbjct: 1378 NDYVGKGLSGGRLIVYPPRGAAFKAEENVIVGNTCLYGATRGTCFFRGVAAERFAVRNSG 1437
Query: 1518 ARAVVEGVGDHGCEYMXXXXXXXXXXXXRNFAAGMSGGIAYVLDVDGKFRSRCNPXXXXX 1577
A AVVEGVGDHGCEYM RNFAAGMSGGIAY+LD++ F S+ N
Sbjct: 1438 ATAVVEGVGDHGCEYMTGGRVVVLGSTGRNFAAGMSGGIAYILDMNQDFLSKVNMEMVEC 1497
Query: 1578 XXXXXXXXIITLRMMIQQHQRYTNSQLAKEVLADFENLLPKFIKVFPRDYKRVLASMKVX 1637
I LR +I+ H YT S+LA +L DF LP FIKV P DYKR L +
Sbjct: 1498 SGLEDPAEIAFLRGLIEDHHHYTGSELAARILLDFTRALPHFIKVLPTDYKRTLEE-EAA 1556
Query: 1638 XXXXXXXXXXXXXXXXXXXXFKEKDAFE-ELKKMAIASLNEKSNQEAEQVEPTKRPSRVA 1696
K+K E + KK + + + +VE KR + +
Sbjct: 1557 KAAAAKKAETTIPQLPSVPVEKQKPKAEGDAKKAELLDIEDSVTDS--KVEK-KRTALIL 1613
Query: 1697 DAVKHRGFIAYEREGVQYRDPNIRMNDWKEVMEESKPGPLLKTQSARCMDCGTPFC 1752
D K RGF+ Y R +YR+P R DW E+ L K QSARCMDCG PFC
Sbjct: 1614 D--KTRGFMKYNRRSEKYRNPATRTRDWAELSSRLTEDEL-KYQSARCMDCGVPFC 1666
|
|
| SGD|S000002330 GLT1 "NAD(+)-dependent glutamate synthase (GOGAT)" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 3223 (1139.6 bits), Expect = 0., P = 0.
Identities = 685/1426 (48%), Positives = 906/1426 (63%)
Query: 359 GNVNWMKAREGLLKCKELGLS----KDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGR-S 413
G +N ++ + ++ +E ++ KDE+ KL PI++ SDS A D VLELL G S
Sbjct: 292 GEINTLRGNKNWMRSREGVMNSATFKDELDKLYPIIEEGGSDSAALDNVLELLTINGTLS 351
Query: 414 LPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGL 473
LPEAVMMM+PEA+ D MD KA Y++ + LMEPWDGPAL++FTDGRY GA LDRNGL
Sbjct: 352 LPEAVMMMVPEAYHKD--MDSDLKAWYDWAACLMEPWDGPALLTFTDGRYCGAILDRNGL 409
Query: 474 RPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVDFEKRIVVDDEALKQQY 533
RP R+YIT RVI ASEVGV+ I V++KG+L PG + LVD + +VD + LK Q
Sbjct: 410 RPCRYYITSDDRVICASEVGVIPIENSLVVQKGKLKPGDLFLVDTQLGEMVDTKKLKSQI 469
Query: 534 SLARPYGEWLQRQKIELKNIVESIHKSERVSPGIAGVLPASNDDDNMENMGIHGLLAPLK 593
S + + WL + I+L +++ K+ + P S D +++ LLA
Sbjct: 470 SKRQDFKSWLSKV-IKLDDLLS---KTANLVPKEF----ISQDSLSLKVQSDPRLLAN-- 519
Query: 594 AFGYTVEALEMLMLPMAKDGTEALGSMGNDAPLAVMSNREKLTFEYFKQMFAQVTNPPID 653
GYT E + L+ PMA G EALGSMGNDAPLA ++ L ++YF+Q+FAQVTNPPID
Sbjct: 520 --GYTFEQVTFLLTPMALTGKEALGSMGNDAPLACLNENPVLLYDYFRQLFAQVTNPPID 577
Query: 654 PIREKIVTSMECMIGPEGVLTETTEEQCHRLSLKGPLLSIEEMEAIKRMN--YRGWRSKV 711
PIRE V S+EC +GP+G L E QC RL LK P+L E +A+K + Y W
Sbjct: 578 PIREANVMSLECYVGPQGNLLEMHSSQCDRLLLKSPILHWNEFQALKNIEAAYPSWSVAE 637
Query: 712 LDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRXXXXXXXXXXXXH 771
+DIT+ K G G +T+D+I A +AI +G +L+++DR + R H
Sbjct: 638 IDITFDKSEGLLGYTDTIDKITKLASEAIDDGKKILIITDRKMGANRVSISSLIAISCIH 697
Query: 772 HHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAICPYLATEAIWRLQVDGKIPP-K 830
HHL++N +R+++ LI+E+ E RE+HHFC L+G+G D + PYLA E + R+ +G +
Sbjct: 698 HHLIRNKQRSQVALILETGEAREIHHFCVLLGYGCDGVYPYLAMETLVRMNREGLLRNVN 757
Query: 831 ASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEALGLSSEVIEKCFAG 890
+ + ++++ Y A + G++KV++KMGISTLASYKGAQIFEALGL + +++ CF G
Sbjct: 758 NDNDTLEEGQILENYKHAIDAGILKVMSKMGISTLASYKGAQIFEALGLDNSIVDLCFTG 817
Query: 891 TPSRVDGATFEVLASDALHLHELAFPTRILPPGSAEAVALPNPGDYHWRKGGEIHLNDPL 950
T SR+ G TFE LA DA LHE +P+R +++V LP G+YH+R GG H+N+P
Sbjct: 818 TSSRIRGVTFEYLAQDAFSLHERGYPSR---QTISKSVNLPESGEYHFRDGGYKHVNEPT 874
Query: 951 AIAKLQEAARGNSVAAYKEYSKRIQELNKTCNLRGLLKFK-EADVKIPLEEVEPASEIVK 1009
AIA LQ+ R + +++ Y K+ E + C LRGLL+ E V IPLE+VEP +EI +
Sbjct: 875 AIASLQDTVRNKNDVSWQLYVKKEMEAIRDCTLRGLLELDFENSVSIPLEQVEPWTEIAR 934
Query: 1010 RFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRSAIKQ 1069
RF +GAMSYGSIS+EAH+TLA AMN++G KSN GEGGE R +G + RSAIKQ
Sbjct: 935 RFASGAMSYGSISMEAHSTLAIAMNRLGAKSNCGEGGEDAERSAVQENG--DTMRSAIKQ 992
Query: 1070 VASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPP 1129
VAS RFGV+SYYL++ADE+QIK+AQGAKPGEGGELP HKV DIA TR+ST VGLISPP
Sbjct: 993 VASARFGVTSYYLSDADEIQIKIAQGAKPGEGGELPAHKVSKDIAKTRHSTPNVGLISPP 1052
Query: 1130 PHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGG 1189
PHHDIYSIEDL QLIYDLK ANP A ISVKLVSE GVG++ASGV K ADH+L+SGHDGG
Sbjct: 1053 PHHDIYSIEDLKQLIYDLKCANPRAGISVKLVSEVGVGIVASGVAKAKADHILVSGHDGG 1112
Query: 1190 TGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEE 1249
TGA+RWT +K AGLPWELGLAETHQTLV NDLR ++QTDGQL+TG D+A+A LLGAE
Sbjct: 1113 TGAARWTSVKYAGLPWELGLAETHQTLVLNDLRRNVVVQTDGQLRTGFDIAVAVLLGAES 1172
Query: 1250 FGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREI 1309
F +T PLI +GC+M+R+CH N+C VGIATQDP LR KF G+PEHVINFF+ L ++LR+I
Sbjct: 1173 FTLATVPLIAMGCVMLRRCHLNSCAVGIATQDPYLRSKFKGQPEHVINFFYYLIQDLRQI 1232
Query: 1310 MSQLGFRTITEMIGRSDMLEVDKEVTKTNEKLENIDLSLLLRPAADLRPEAAQYCVQKQD 1369
M++LGFRTI EM+G S+ L+ +V N K NIDLS +L PA +RP +KQD
Sbjct: 1233 MAKLGFRTIDEMVGHSEKLKKRDDV---NAKAINIDLSPILTPAHVIRPGVPTKFTKKQD 1289
Query: 1370 HGLDMALDQKLIKLSKAALEKALPVYIETPVCNVNRAVGTMLSHEVTKRYHLVGLPADTI 1429
H L LD KLI ++ L++ LPV I+ + N +RA+G+ LS+ V+K++ GLP DT+
Sbjct: 1290 HKLHTRLDNKLIDEAEVTLDRGLPVNIDASIINTDRALGSTLSYRVSKKFGEDGLPKDTV 1349
Query: 1430 HIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIG 1489
+ + GSAGQS GAFL GI L GD+NDYVGKGLSGG IV PPK S F N+++G
Sbjct: 1350 VVNIEGSAGQSFGAFLASGITFILNGDANDYVGKGLSGGIIVIKPPKDSKFKSDENVIVG 1409
Query: 1490 NVALYGATSGEAYFNGMAAERFCVRNSGARAVVEGV-GDHGCEYMXXXXXXXXXXXXR-N 1547
N YGATSG A+ +G A ERF VRNSGA VVE + G++ EYM N
Sbjct: 1410 NTCFYGATSGTAFISGSAGERFGVRNSGATIVVERIKGNNAFEYMTGGRAIVLSQMESLN 1469
Query: 1548 FAAGMSGGIAYVLDVD-GKFRSRCNPXXXXXXXXXXXXXIITLRMMIQQHQRYTNSQLAK 1606
+G +GGIAY L D F + N I ++ +IQ+H YT S LA
Sbjct: 1470 AFSGATGGIAYCLTSDYDDFVGKINKDTVELESLCDPVEIAFVKNLIQEHWNYTQSDLAA 1529
Query: 1607 EVLADFENLLPKFIKVFPRDYKRVLASMKVXXXXXXXXXXXXXXXXXXXXXFKEKDAFEE 1666
+L +F + L F+KV P DYK+VL K +E D +E
Sbjct: 1530 RILGNFNHYLKDFVKVIPTDYKKVLLKEKAEAAKAKAKATSEYLKKFRSN--QEVD--DE 1585
Query: 1667 LKKMAIASLNEKSNQEAEQV----EPT-KRPSRV--ADAVKHRGFIAYEREGVQ------ 1713
+ + IA+ K ++ + + + T K P V DAV + E ++
Sbjct: 1586 VNTLLIANQKAKEQEKKKSITISNKATLKEPKVVDLEDAVPDSKQLEKNSERIEKTRGFM 1645
Query: 1714 -YRDPNIRMNDWKEVMEESKP--GPLLKT----QSARCMDCGTPFC 1752
++ + D + + + K P+ K Q+ARCMDCGTPFC
Sbjct: 1646 IHKRRHETHRDPRTRVNDWKEFTNPITKKDAKYQTARCMDCGTPFC 1691
|
|
| POMBASE|SPAPB1E7.07 glt1 "glutamate synthase Glt1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 3148 (1113.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 609/1041 (58%), Positives = 769/1041 (73%)
Query: 594 AFGYTVEALEMLMLPMAKDGTEALGSMGNDAPLAVMSNREKLTFEYFKQMFAQVTNPPID 653
AFGYT+E + M+M PMA G E LGSMGNDA +A +S++ +L ++YF+Q+FAQVTNPPID
Sbjct: 532 AFGYTLEQINMIMAPMANGGKETLGSMGNDAAIACLSDQPRLLYDYFRQLFAQVTNPPID 591
Query: 654 PIREKIVTSMECMIGPEGVLTETTEEQCHRLSLKGPLLSIEEMEAIKRMN--YRGWRSKV 711
PIRE IV S++C IGP G L E + QC RL + P+L++EE A+K ++ Y W+
Sbjct: 592 PIREAIVMSLQCYIGPSGNLLEINQSQCRRLRMPTPILTVEEFNALKNVDRIYPDWKVAS 651
Query: 712 LDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRXXXXXXXXXXXXH 771
+DIT+ K G G ++RIC+EA A+ EGY +VLSDR +S+R H
Sbjct: 652 IDITFFKSEGVAGYAAAIERICSEADTAVNEGYKAIVLSDRNVNSERVPLASIAACGAVH 711
Query: 772 HHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAICPYLATEAIWRLQVDGKIPPKA 831
H+LV+N R+R+ L+ ES + REVHH CTL+G+GADA+CPYLA EA+ +L + P
Sbjct: 712 HYLVQNKLRSRVALVCESGDAREVHHMCTLLGYGADAVCPYLAMEALTKLVRQNAMKPGI 771
Query: 832 SGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEALGLSSEVIEKCFAGT 891
+ E +K + A N G++KV++KMGISTL SYKGAQIFEALG+ +EVI KCF GT
Sbjct: 772 TEE-----TAIKNFKHAINGGILKVMSKMGISTLQSYKGAQIFEALGIDNEVINKCFLGT 826
Query: 892 PSRVDGATFEVLASDALHLHELAFPTRILPPGSAEAVALPNPGDYHWRKGGEIHLNDPLA 951
SR+ G TFE +A DA LHE +PT S ++ +P+ GD+++R GGE H+N P A
Sbjct: 827 ASRIRGVTFEHIALDAFALHERGYPT----DQSIRSLQIPDMGDFYYRDGGEQHVNHPKA 882
Query: 952 IAKLQEAARGNSVAAYKEYSKRIQELNKTCNLRGLLKFK-EADVKIPLEEVEPASEIVKR 1010
IA LQ+A R + AAY E+S+ E + C LRG+L F ++ IP+E+VEP +EIV+R
Sbjct: 883 IASLQDAVRNKNEAAYAEFSRTHYEQTRRCTLRGMLDFDFDSSQAIPIEQVEPWTEIVRR 942
Query: 1011 FCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRSAIKQV 1070
FCTGAMSYGSIS+E+H++LA AMN++GGKSNTGEGGE P+R + L++G + RSAIKQ+
Sbjct: 943 FCTGAMSYGSISMESHSSLAIAMNRLGGKSNTGEGGEDPARSQRLANG--DTMRSAIKQI 1000
Query: 1071 ASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPP 1130
ASGRFGV+S+YL++ADELQIKMAQGAKPGEGGELPG+KV IA TR+STAGVGLISPPP
Sbjct: 1001 ASGRFGVTSWYLSDADELQIKMAQGAKPGEGGELPGNKVSESIAKTRHSTAGVGLISPPP 1060
Query: 1131 HHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGT 1190
HHDIYSIEDL QLIYD+K+ANP AR+SVKLVSE GVG++ASGV K ADH+L+SGHDGGT
Sbjct: 1061 HHDIYSIEDLKQLIYDMKSANPRARVSVKLVSEVGVGIVASGVAKAKADHILVSGHDGGT 1120
Query: 1191 GASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEF 1250
GASRWTGIK AGLPWELG+AETHQTLV NDLRGR ++QTDGQ++TGRDVAIA LLGAEE+
Sbjct: 1121 GASRWTGIKYAGLPWELGVAETHQTLVLNDLRGRVVIQTDGQIRTGRDVAIACLLGAEEW 1180
Query: 1251 GFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIM 1310
GF+T PLI LGCIMMRKCH NTCPVGIATQDP LR+KF G+PEHV+NFF+ +AEELR IM
Sbjct: 1181 GFATTPLIALGCIMMRKCHLNTCPVGIATQDPELRKKFEGQPEHVVNFFYYVAEELRGIM 1240
Query: 1311 SQLGFRTITEMIGRSDMLEVDKEVTKTNEKLENIDLSLLLRPAADLRPEAAQYCVQKQDH 1370
++LGFRTI EM+GRSD L+V + + N K + +DL+ LL PA LRP AA Y V+KQDH
Sbjct: 1241 AKLGFRTINEMVGRSDKLKVAEPI---NNKSKLLDLTPLLTPAFTLRPGAATYNVRKQDH 1297
Query: 1371 GLDMALDQKLIKLSKAALEKALPVYIETPVCNVNRAVGTMLSHEVTKRYHLVGLPADTIH 1430
L LD KLI ++ LE+ +P +E + N +R +G LS++++KRY GLP D+I
Sbjct: 1298 RLYTRLDNKLIDEAEVTLEEGIPSVVECEIINTDRTLGATLSNKISKRYGEEGLPTDSIR 1357
Query: 1431 IKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGN 1490
+ + GSAGQS GAFL PG+ L+LEGD NDYVGKGLSGG+++ YPP+ S F P+ N++IGN
Sbjct: 1358 VNVFGSAGQSFGAFLAPGVTLQLEGDCNDYVGKGLSGGRLIIYPPRVSPFKPEENMIIGN 1417
Query: 1491 VALYGATSGEAYFNGMAAERFCVRNSGARAVVEGVGDHGCEYMXXXXXXXXXXXXRNFAA 1550
V LYGATSG A+ +G+AAERF VRNSGA AVVEGVGDHGCEYM RNFAA
Sbjct: 1418 VCLYGATSGHAFISGVAAERFAVRNSGAIAVVEGVGDHGCEYMTGGRVVILGSTGRNFAA 1477
Query: 1551 GMSGGIAYVLDVDGKFRSRCNPXXXXXXXXXXXXXIITLRMMIQQHQRYTNSQLAKEVLA 1610
GMSGGIAYV D+ F + N I LR +IQ H+ YT SQ+A +L+
Sbjct: 1478 GMSGGIAYVYDMQMDFAGKINTEMVDISSVTDAAEIAFLRGLIQDHRHYTGSQVADRILS 1537
Query: 1611 DFENLLPKFIKVFPRDYKRVL 1631
DF L +F+KV PR+YK VL
Sbjct: 1538 DFPRHLSRFVKVLPREYKAVL 1558
|
|
| CGD|CAL0000516 GLT1 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 3129 (1106.5 bits), Expect = 0., P = 0.
Identities = 628/1175 (53%), Positives = 808/1175 (68%)
Query: 592 LKAFGYTVEALEMLMLPMAKDGTEALGSMGNDAPLAVMSNREKLTFEYFKQMFAQVTNPP 651
L A GY+ E + ++ PMA +G EALGSMGND LA +S + KL +EYF+Q+FAQVTNPP
Sbjct: 518 LIAAGYSHEQILFVLAPMA-EGNEALGSMGNDNALACISEQPKLLYEYFRQLFAQVTNPP 576
Query: 652 IDPIREKIVTSMECMIGPEGVLTETTEEQCHRLSLKGPLLSIEEMEAIKRMN--YRGWRS 709
IDPIREKIV S+EC +GP+G L E +Q +RL LK P+L+ E+ AIK + Y W
Sbjct: 577 IDPIREKIVMSLECYVGPQGNLLEMKPDQLNRLLLKSPILTSSELLAIKNIQTVYPSWSV 636
Query: 710 KVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRXXXXXXXXXXX 769
+DIT+ K G +G T+DRIC A AI + +++LSD A S++R
Sbjct: 637 ANIDITFEKSEGIQGYINTIDRICQAASQAIADDNQIIILSDVATSAERLPISALIAVGA 696
Query: 770 XHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAICPYLATEAIWRLQVDGKIPP 829
HHHLV+ +R+++ LI+E+ E +EVHH C LVG+GADAI PYLA E + R++ G +
Sbjct: 697 VHHHLVRQKQRSKVALIIETQEAKEVHHACCLVGYGADAINPYLAMETLVRMKHQGLL-- 754
Query: 830 KASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEALGLSSEVIEKCFA 889
E +++++++ Y + + G++KV++KMGISTLASYKGAQIFEALG+ + VI++CFA
Sbjct: 755 --KNESLTEEKIIQNYKGSIDAGILKVMSKMGISTLASYKGAQIFEALGIDNSVIDRCFA 812
Query: 890 GTPSRVDGATFEVLASDALHLHELAFPTRILPPGSAEAVALPNPGDYHWRKGGEIHLNDP 949
GT SR+ G TFE +A DA LHE +PTR + + + LP G+YHWR GG+ H+NDP
Sbjct: 813 GTASRIKGVTFEYIAQDAFTLHERGYPTR----DTIKPIGLPETGEYHWRDGGDAHINDP 868
Query: 950 LAIAKLQEAARGNSVAAYKEYSKRIQELNKTCNLRGLLKFK-EADVKIPLEEVEPASEIV 1008
AIA LQ+A R + AY+ Y+K+ E + C LRGLL F+ E+ ++P+++VEP +EIV
Sbjct: 869 AAIASLQDAVRNKNERAYEAYAKKENEAVRNCTLRGLLDFEFESSTEVPIDQVEPWTEIV 928
Query: 1009 KRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRSAIK 1068
+RF TGAMSYGSIS+E+H+TLA AMN++GGKSNTGEGGE +R + L +G + RSAIK
Sbjct: 929 RRFFTGAMSYGSISMESHSTLAVAMNRLGGKSNTGEGGEDAARSQVLENG--DTMRSAIK 986
Query: 1069 QVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISP 1128
QVASGRFGV+SYYL +ADELQIKMAQGAKPGEGGELPGHKV +I TR+ST GVGLISP
Sbjct: 987 QVASGRFGVTSYYLADADELQIKMAQGAKPGEGGELPGHKVSAEIGKTRHSTPGVGLISP 1046
Query: 1129 PPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDG 1188
PPHHDIYSIEDL QL+YDLK ANP AR SVKLVSE GVG++A+GV K ++++L+SG DG
Sbjct: 1047 PPHHDIYSIEDLKQLLYDLKCANPRARTSVKLVSEVGVGIVAAGVAKAGSENILVSGGDG 1106
Query: 1189 GTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAE 1248
GTGA++ T IK AGLPWELGLAE+HQTLV NDLRGR ILQTDGQ++TGRD+AIA LLGAE
Sbjct: 1107 GTGAAKLTSIKYAGLPWELGLAESHQTLVLNDLRGRVILQTDGQIRTGRDIAIACLLGAE 1166
Query: 1249 EFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELRE 1308
E+GF+T+PLI +GCI MRKCH TCPVGIATQDP LR+KF G PEHVINFF+ LA +LR+
Sbjct: 1167 EWGFATSPLIAMGCIYMRKCHLGTCPVGIATQDPELRKKFEGTPEHVINFFYYLANDLRK 1226
Query: 1309 IMSQLGFRTITEMIGRSDMLEVDKEVTKTNEKLENIDLSLLLRPAADLRPEAAQYCVQKQ 1368
M++LGFRTI EM+GR++ L+V ++ T K NIDLS +L PA +RP A +CV+KQ
Sbjct: 1227 FMAKLGFRTINEMVGRTEKLKVRDDLRNT--KNANIDLSPILTPAHTIRPGVATHCVRKQ 1284
Query: 1369 DHGLDMALDQKLIKLSKAALEKALPVYIETPVCNVNRAVGTMLSHEVTKRYHLVGLPADT 1428
DH L + +D KLI S+ L K LPV I+ V N +R++GT LS+ V+K + GLP DT
Sbjct: 1285 DHKLHIRVDNKLIDESELTLAKGLPVTIDCEVVNTDRSLGTTLSYRVSKTFGEQGLPHDT 1344
Query: 1429 IHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVI 1488
IH+ +TGSAGQS GAFL G+ LELEGD+NDY+GKGLSGG+I+ YPP+ S F + I+
Sbjct: 1345 IHVNVTGSAGQSFGAFLASGVTLELEGDANDYIGKGLSGGRIIVYPPRESKFKAEDQIIA 1404
Query: 1489 GNVALYGATSGEAYFNGMAAERFCVRNSGARAVVEGVGDHGCEYMXXXXXXXXXXXXRNF 1548
GN A +GATSG A+ G+AAERF VRNSGA V EG GDHGCEYM RNF
Sbjct: 1405 GNTAFFGATSGSAFIRGIAAERFAVRNSGAIIVTEGTGDHGCEYMSGGRVVVLGATGRNF 1464
Query: 1549 AAGMSGGIAYVLDVDGKFRSRCNPXXXXXXXXXXXXXIITLRMMIQQHQRYTNSQLAKEV 1608
A+GM GGIAYVLD+ F + N I LR +I+ H+ YT S++A +
Sbjct: 1465 ASGMCGGIAYVLDMAQDFSEKVNRAQVELSQVTETEEIAFLRNLIEDHRHYTGSEVADNI 1524
Query: 1609 LADFENLLPKFIKVFPRDYKRVLASMKVXXXXXXXXXXXXXXXXXXXXXFKEKDAFE--E 1666
L DF LP+F+KV P DYK+VL K + E +
Sbjct: 1525 LNDFNRYLPRFVKVLPNDYKKVLEKEKKLAEEAKKKELSSFLKSIKEDPESDVTNGEAYK 1584
Query: 1667 LKKMAIASLNEKSNQ-EAEQVEPT--------KRPSRVADAVKHRGFIAYEREGVQYRDP 1717
+KK + N+ N+ + VE T K P ++ D K RGF+ Y+R +YRD
Sbjct: 1585 IKKGHVHHPNKGKNEPKVADVEDTIFNTEFEKKAPVKL-D--KLRGFMKYKRRNEKYRDA 1641
Query: 1718 NIRMNDWKEVMEESKPGPLLKTQSARCMDCGTPFC 1752
R DW E M LK ++ARCMDCG PFC
Sbjct: 1642 KARTKDWNE-MTSRLTKEELKYETARCMDCGVPFC 1675
|
|
| FB|FBgn0036663 CG9674 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 2913 (1030.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 584/1053 (55%), Positives = 737/1053 (69%)
Query: 587 GLLAP-LKAFGYTVEALEMLMLPMAKDGTEALGSMGNDAPLAVMSNREKLTFEYFKQMFA 645
G+ P L FGY+ E + ML++PM K+ EALGSMGNDAPLA +SN + + +EYFKQ+FA
Sbjct: 537 GIFDPRLSLFGYSTETVNMLLIPMFKNKKEALGSMGNDAPLACLSNFQPIPYEYFKQLFA 596
Query: 646 QVTNPPIDPIREKIVTSMECMIGPEGVLTETTEEQCHRLSLKGPLLSIEEMEAIKRMNYR 705
QVTNPPIDP REK+V SM+C +GPE L + + +Q HR+ L P+LSI + + +KR +R
Sbjct: 597 QVTNPPIDPFREKVVMSMQCPLGPEANLLQPSAQQVHRIWLTNPILSIPDTQLLKRNTHR 656
Query: 706 GWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDR-AFSSKRXXXXXX 764
GWR+KVLDIT+ + G +G + +DRIC E A + GY LLV+SDR A +
Sbjct: 657 GWRTKVLDITFQYNEGVQGYIDAIDRICREGYAAAQAGYQLLVISDRGAGIDGKVAVSAL 716
Query: 765 XXXXXXHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAICPYLATEAIWRLQVD 824
HHHL++ L+R ++G++VE+AE REVHH C L+G+GADAICPYLA E L+ D
Sbjct: 717 LALGALHHHLIETLQRMKVGIVVETAEAREVHHICVLLGYGADAICPYLAFELAQALRDD 776
Query: 825 GKIPPKASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEALGLSSEVI 884
G I P E + K ++ Y +A + G+ KV+AKMGISTL SYK AQIFEA+GL S+++
Sbjct: 777 GVIAP----EVNDK-QIYAAYAQAIDTGIAKVMAKMGISTLQSYKSAQIFEAVGLGSDLV 831
Query: 885 EKCFAGTPSRVDGATFEVLASDALHLHELAFPTRILPPGSAEAVALPNPGDYHWRKGGEI 944
KCF GT SR+ G T E+LA + L ++L + + P + L NPG YHWR GGE
Sbjct: 832 AKCFRGTQSRIGGVTLEILAKEGLQRYQLTYG-KATP----DTRILRNPGQYHWRHGGEA 886
Query: 945 HLNDPLAIAKLQEAARGNSVAAYKEYSKRIQELNKTCNLRGLLKFKEADVKIPLEEVEPA 1004
H+N+P +I LQEAA ++ A++ + K + K C LRG L+F I + EVEPA
Sbjct: 887 HINEPSSIGSLQEAAVNKNLDAFEAFKKTTLDSVKKCALRGQLEFVTDRQSIDISEVEPA 946
Query: 1005 SEIVKRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKR 1064
SEIVKRF TGAMS+GSISLEAH TL+ MN+IGGKSNTGEGGE R L+ N +R
Sbjct: 947 SEIVKRFATGAMSFGSISLEAHQTLSITMNRIGGKSNTGEGGEDSDRY--LNQDPNNSRR 1004
Query: 1065 SAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVG 1124
SAIKQVASGRFGV++ YL NAD+LQIKMAQGAKPGEGGELPG+KV DIA TR S GVG
Sbjct: 1005 SAIKQVASGRFGVTASYLANADDLQIKMAQGAKPGEGGELPGYKVTKDIAKTRKSVPGVG 1064
Query: 1125 LISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLIS 1184
LISPPPHHDIYSIEDLA+LIYDLK +NP ARISVKLVSE GVGV+ASGV KG A+H++IS
Sbjct: 1065 LISPPPHHDIYSIEDLAELIYDLKCSNPNARISVKLVSEVGVGVVASGVAKGKAEHIVIS 1124
Query: 1185 GHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAAL 1244
GHDGGTGAS WTGIKNAGLPWELG+AETHQ LV N+LR R I+Q DGQL+TG DV +AAL
Sbjct: 1125 GHDGGTGASSWTGIKNAGLPWELGVAETHQVLVLNNLRSRVIVQADGQLRTGFDVVVAAL 1184
Query: 1245 LGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAE 1304
LGA+EFGFSTAPLI +GC MMRKCH NTCPVGIATQDP LR+KF G+PEHVINFFFMLAE
Sbjct: 1185 LGADEFGFSTAPLIVMGCTMMRKCHLNTCPVGIATQDPELRKKFTGKPEHVINFFFMLAE 1244
Query: 1305 ELREIMSQLGFRTITEMIGRSDMLEVDKEVTKTNEKLENIDLSLLLRPAADLRPEAAQYC 1364
++R+IM+ LG R ++IGR+D+L V ++ + K N+DL LLL+PA +LRP
Sbjct: 1245 DIRKIMAGLGIRKFQDLIGRTDLLRV---ASQRDAKASNLDLKLLLQPALELRPGTNIVG 1301
Query: 1365 VQ-KQDHGLDMALDQKLIKLSKAALEKALP-VYIETPVCNVNRAVGTMLSHEVTKRYHLV 1422
KQD L+ D +LI ++ A V ++ + N RA G+ LS+ + +Y
Sbjct: 1302 GSVKQDFQLEKRSDNELIAKAQQIFSGADDNVTVKMRIHNEERAFGSTLSYHIACKYGEA 1361
Query: 1423 GLPAD-TIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPKGSLFD 1481
GLPA +I I L GSAGQS AFL G+ + L+GD+NDYVGKGL GG +V P F+
Sbjct: 1362 GLPAGKSIDIFLEGSAGQSFCAFLARGVNVTLKGDANDYVGKGLCGGNVVIMPQDTVPFE 1421
Query: 1482 PKVNIVIGNVALYGATSGEAYFNGMAAERFCVRNSGARAVVEGVGDHGCEYMXXXXXXXX 1541
+N+++GNV LYGAT G AYF G+A+ERFCVRNSG AVVEGVGDHGCEYM
Sbjct: 1422 SHLNVIVGNVCLYGATEGTAYFRGIASERFCVRNSGVTAVVEGVGDHGCEYMTGGVVVIL 1481
Query: 1542 XXXXRNFAAGMSGGIAYVLDVDGKFRSRCNPXXXXXXXXXXXXXIITLRMMIQQHQRYTN 1601
RNFAAGMSGGIAYV D+DG F+ + NP ++ ++ ++ T
Sbjct: 1482 GLTGRNFAAGMSGGIAYVYDLDGSFKPKVNPESVELLPLEIEKDVLLVKELLADFIEKTG 1541
Query: 1602 SQLAKEVLADFENLLPKFIKVFPRDYKRVLASM 1634
S++AKE+L ++ KF+KVFP +Y++ L M
Sbjct: 1542 SKVAKELLDNWAEAQGKFVKVFPYEYQKALKDM 1574
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| UNIPROTKB|P55037 gltB "Ferredoxin-dependent glutamate synthase 1" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)] | Back alignment and assigned GO terms |
|---|
Score = 2883 (1019.9 bits), Expect = 0., Sum P(2) = 0.
Identities = 585/1046 (55%), Positives = 727/1046 (69%)
Query: 594 AFGYTVEALEMLMLPMAKDGTEALGSMGNDAPLAVMSNREKLTFEYFKQMFAQVTNPPID 653
AFGYT E L +L+ PM +DG EA+GSMG D PLAV+S++ KL + YF+Q+FAQVTNPPID
Sbjct: 494 AFGYTFEELRILLAPMGRDGVEAIGSMGADTPLAVLSDKPKLLYNYFQQLFAQVTNPPID 553
Query: 654 PIREKIVTSMECMIGPEGVLTETTEEQCHRLSLKGPLLSIEEMEAIKRMNYRGWRSKVLD 713
IRE+I+TS E IG EG L + E C + LK P+L+ E++ +K ++ ++S LD
Sbjct: 554 SIREEIITSAETTIGGEGNLLDPRPESCRLIELKTPILTNEDLAKLKALDDDEFKSVTLD 613
Query: 714 ITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRXXXXXXXXXXXXHHH 773
I + + G GL+ LD + EA AI +G L++LSDR S+++ HHH
Sbjct: 614 ILFDPNQGEAGLKTALDNLFTEADQAISQGANLIILSDRQVSAEKAAIPALLAVSGLHHH 673
Query: 774 LVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAICPYLATEAIWRLQVDGKIPPKASG 833
L++N RT++GL++ES EPREVHHF L+G+G AI PYLA E + DG I A G
Sbjct: 674 LIRNGSRTKVGLVLESGEPREVHHFAVLLGYGCGAINPYLAFETL-----DGMI---AEG 725
Query: 834 EFHSKDELV--KKYFKASNYGMMKVLAKMGISTLASYKGAQIFEALGLSSEVIEKCFAGT 891
+ D K Y KA+ G++KV +K+GIST+ SY+GAQIFEA+GL+ VI++ F T
Sbjct: 726 LLVNVDHKTACKNYIKAATKGVIKVASKIGISTIQSYRGAQIFEAVGLNQSVIDEYFCRT 785
Query: 892 PSRVDGATFEVLASDALHLHELAFPTRILPPGSAEAVALPNPGDYHWRKGGEIHLNDPLA 951
SR+ G+ V+A +A+ H+ AF R PG + + G+Y WRK GE HL P
Sbjct: 786 SSRIQGSDLGVIAQEAILRHQHAFAPR---PGDLHTLDVG--GEYQWRKDGEEHLFSPQT 840
Query: 952 IAKLQEAARGNSVAAYKEYSKRIQELN-KTCNLRGLLKFKEADVKIPLEEVEPASEIVKR 1010
I LQ A R + YK+Y+ + E N K LRGLL F++ + IPLEEVEP I+KR
Sbjct: 841 IHLLQRAVREGNYELYKQYAALVNEQNQKFFTLRGLLDFQDRE-SIPLEEVEPIEAIMKR 899
Query: 1011 FCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRSAIKQV 1070
F TGAMSYGSIS EAH +LA AMN+IGGKSNTGEGGE P R +D + K SAIKQV
Sbjct: 900 FKTGAMSYGSISKEAHESLAIAMNRIGGKSNTGEGGEDPERFTWTNDQG-DSKNSAIKQV 958
Query: 1071 ASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPP 1130
ASGRFGV+S YL+ A E+QIKMAQGAKPGEGG+LPG KV IA R+ST GVGLISPPP
Sbjct: 959 ASGRFGVTSLYLSQAKEIQIKMAQGAKPGEGGQLPGKKVYPWIAKVRHSTPGVGLISPPP 1018
Query: 1131 HHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGT 1190
HHDIYSIEDLA+LI+DLKNAN ARI+VKLVSE GVG IA+GV K HAD VL+SG+DGGT
Sbjct: 1019 HHDIYSIEDLAELIHDLKNANREARINVKLVSEVGVGTIAAGVAKAHADVVLVSGYDGGT 1078
Query: 1191 GASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEF 1250
GAS T IK+AGLPWELGLAETHQTLV N+LR R +++TDGQ+KTGRDVAIAALLGAEEF
Sbjct: 1079 GASPQTSIKHAGLPWELGLAETHQTLVLNNLRSRIVVETDGQMKTGRDVAIAALLGAEEF 1138
Query: 1251 GFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIM 1310
GFSTAPL++LGCIMMR CH NTCPVGIATQ+P LR KF G+P H +NF +A ELRE+M
Sbjct: 1139 GFSTAPLVSLGCIMMRACHLNTCPVGIATQNPELRAKFTGDPAHAVNFMTFIATELREVM 1198
Query: 1311 SQLGFRTITEMIGRSDMLEVDKEVTKTNEKLENIDLSLLLRPAADLRPEAAQYCVQKQDH 1370
+QLGFRTI EM+GR+D+LE K V + K + IDLS +L ++ + +YC QDH
Sbjct: 1199 AQLGFRTINEMVGRTDILEPKKAVA--HWKAKGIDLSTILHQP-EVGDDVGRYCQIPQDH 1255
Query: 1371 GLDMALD-QKLIKLSKAALEKALPVYIETPVCNVNRAVGTMLSHEVTKRYHLVGLPADTI 1429
GL +LD +L+ L + A+ K V P+ N+NR VGT++ +E+TKR H GLP DT+
Sbjct: 1256 GLQHSLDITQLLDLCQPAIAKGEKVTATLPITNINRVVGTIVGNEITKR-HWEGLPEDTV 1314
Query: 1430 HIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIG 1489
H+ GSAGQS GAF+ G+ LELEGD+NDY+GKGLSGGKI+ YPPKGS F NI+ G
Sbjct: 1315 HLHFQGSAGQSFGAFIPKGMTLELEGDANDYLGKGLSGGKIIVYPPKGSSFIASENIIAG 1374
Query: 1490 NVALYGATSGEAYFNGMAAERFCVRNSGARAVVEGVGDHGCEYMXXXXXXXXXXXXRNFA 1549
NV LYGAT+GE Y +GM ERFCVRNSG VVE VGDHGCEYM RNFA
Sbjct: 1375 NVCLYGATAGEVYISGMVGERFCVRNSGVNTVVEAVGDHGCEYMTGGKVVVLGQTGRNFA 1434
Query: 1550 AGMSGGIAYVLDVDGKFRSRCNPXXXXXXXXXXXXXIITLRMMIQQHQRYTNSQLAKEVL 1609
AGMSGG+AY+ D G F +RCN I L+ +IQ H YT+S K VL
Sbjct: 1435 AGMSGGVAYIFDETGDFATRCNSAMVGLEKLEDPEEIKDLKELIQNHVNYTDSAKGKAVL 1494
Query: 1610 ADFENLLPKFIKVFPRDYKRVLASMK 1635
AD+E +PKF+KV PRDYKRVL ++K
Sbjct: 1495 ADWEASIPKFVKVMPRDYKRVLQAIK 1520
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| TIGR_CMR|CPS_0761 CPS_0761 "putative glutamate synthase, ferredoxin-dependent" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 2656 (940.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 544/1047 (51%), Positives = 705/1047 (67%)
Query: 593 KAFGYTVEALEMLMLPMAKDGTEALGSMGNDAPLAVMSNREKLTFEYFKQMFAQVTNPPI 652
KAFGYT E L +++ M E LG+MG D PLAV+S+R + YFKQ+FAQVTNPPI
Sbjct: 474 KAFGYTSEDLNLVLAGMVGTSKEPLGAMGTDTPLAVLSSRPQQLSHYFKQLFAQVTNPPI 533
Query: 653 DPIREKIVTSMECMIGPEGVLTETTEEQCHRLSLKGPLLSIEEMEAIKRMNYRGWRSKVL 712
DPIRE++V S+ IG L + T E CH++ ++ P+L+I+++ ++ ++ +SK +
Sbjct: 534 DPIREELVMSLRGYIGKSFNLLDETPEHCHKVEIEQPVLTIDQLRKLQYIDNNHLQSKTI 593
Query: 713 DITYSKDHGRRG-LEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRXXXXXXXXXXXXH 771
IT+ K G G L++ LDR+C A+ A+++GY +L+LSDR S H
Sbjct: 594 AITF-KASGEAGALKKALDRVCFNAKSAVEDGYEILILSDREVDSDHVAIPSVLATAAVH 652
Query: 772 HHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAICPYLATEAIWRLQVDGKIPPKA 831
H+L++ R+ +I+ES + RE HHF T++G+GA A+ PYLA E+++ L+ +G + K
Sbjct: 653 HYLIREKLRSGADIILESGDIRETHHFATVIGYGAAAVNPYLALESMYGLRDEGVLDSKL 712
Query: 832 SGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEALGLSSEVIEKCFAGT 891
+ E E+V KY A G++K +KMGISTL SY GAQ+FEALG++S+VI++ F GT
Sbjct: 713 TDE-----EIVAKYTAAVGSGLLKTFSKMGISTLQSYLGAQVFEALGINSDVIDEYFTGT 767
Query: 892 PSRVDGATFEVLASDALHLHELAFP--TRILPPGSAEAVALPNPGDYHWRKGGEIHLNDP 949
SR+ G + + +A +AL H FP +RI + E + LP G+Y WR GE HL P
Sbjct: 768 VSRIQGLSLDQIAQEALLRHREGFPEASRI----AVENL-LPTGGEYSWRNDGERHLFSP 822
Query: 950 LAIAKLQEAARGNSVAAYKEYSKRIQELNKTC-NLRGLLKFKEADVKIPLEEVEPASEIV 1008
I LQ + N +K+Y+K + + +K LRGLL+ IPL EVEP I
Sbjct: 823 TVIRLLQHSTASNDTNQFKQYAKTVDDQSKEAFTLRGLLELNSDRPSIPLSEVEPIENIF 882
Query: 1009 KRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDG-SMNPKRSAI 1067
KRF +GAMS+GSIS EAHTTLA AMN+IGGKSN+GEGGE P R PL +G SMN S I
Sbjct: 883 KRFASGAMSFGSISWEAHTTLAIAMNRIGGKSNSGEGGEDPIRYTPLENGDSMN---SRI 939
Query: 1068 KQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLIS 1127
KQVASGRFGV+S+YLTNADELQIKMAQGAKPGEGG+LPG KV I TR ST GVGLIS
Sbjct: 940 KQVASGRFGVTSHYLTNADELQIKMAQGAKPGEGGQLPGDKVDAWIGKTRGSTPGVGLIS 999
Query: 1128 PPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHD 1187
PPPHHDIYSIEDL+QLI+DLKNAN AR++VKLVSEAGVG IASGV K +AD VLI+GHD
Sbjct: 1000 PPPHHDIYSIEDLSQLIFDLKNANREARVNVKLVSEAGVGTIASGVAKAYADVVLIAGHD 1059
Query: 1188 GGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGA 1247
GGTGAS + IK+ GLPWELGLAETHQTLV N LR R +QTDGQLKT RD+AIA LLGA
Sbjct: 1060 GGTGASPLSSIKHTGLPWELGLAETHQTLVRNHLRSRITVQTDGQLKTPRDLAIATLLGA 1119
Query: 1248 EEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELR 1307
EE+G +T L+ GCIMMRKCH NTCPVGIATQD LR+KF G + ++NFF M+AE LR
Sbjct: 1120 EEYGMATTALVVEGCIMMRKCHLNTCPVGIATQDKGLRDKFTGRADILVNFFTMMAEGLR 1179
Query: 1308 EIMSQLGFRTITEMIGRSDMLEVDKEVTKTNEKLENIDLSLLLRPAADLRPEAAQYCVQK 1367
EIM++LGF+TI EM+G++ L+ + V + K + +DL+ LL E +
Sbjct: 1180 EIMAELGFKTIEEMVGQTQCLKQLENVD--HWKYQGLDLTPLLHKEESHESETLYQSIN- 1236
Query: 1368 QDHGLDMALDQKLIKLSKAALEKALPVYIETPVCNVNRAVGTMLSHEVTKRYHLVGLPAD 1427
Q H +D +D+K+IK ++ AL+ V +E V N +R +G M+S+E++K+Y GLP +
Sbjct: 1237 QKHLIDDIIDRKMIKDAQVALDSQQSVSLEYDVINTDRTIGAMISNEISKKYQAEGLPEN 1296
Query: 1428 TIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIV 1487
TI +K GSAGQS G F G+ ELEGD+NDY GKGLSG +V YP K + F NI+
Sbjct: 1297 TIKVKFNGSAGQSFGCFSAKGLHFELEGDANDYFGKGLSGANLVVYPSKQAKFIASENIL 1356
Query: 1488 IGNVALYGATSGEAYFNGMAAERFCVRNSGARAVVEGVGDHGCEYMXXXXXXXXXXXXRN 1547
IGNVA +GATSG A+ G+A ERFCVRNSGA AVVEGVGDHGCEYM RN
Sbjct: 1357 IGNVAFFGATSGSAFIRGIAGERFCVRNSGATAVVEGVGDHGCEYMTGGKAVILGATGRN 1416
Query: 1548 FAAGMSGGIAYVLDVDGKFRSRCNPXXXXXXXXXXXXXIITLRMMIQQHQRYTNSQLAKE 1607
FAAGMSGG+AYVLD + F +CN + L+ +I +H T S +A E
Sbjct: 1417 FAAGMSGGVAYVLDDNKDFAPKCNMEMVSLETVDTDAESLELKALIAEHFAATGSDVANE 1476
Query: 1608 VLADFENLLPKFIKVFPRDYKRVLASM 1634
+L D++N + +F+KV P DYKR+ M
Sbjct: 1477 LLNDWDNNVKRFVKVMPVDYKRMQGYM 1503
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q05755 | GLTB_AZOBR | 1, ., 4, ., 1, ., 1, 3 | 0.4417 | 0.8312 | 0.9656 | yes | no |
| Q03460 | GLSN_MEDSA | 1, ., 4, ., 1, ., 1, 4 | 0.8400 | 0.9744 | 0.7816 | N/A | no |
| P39812 | GLTA_BACSU | 1, ., 4, ., 1, ., 1, 3 | 0.4952 | 0.8443 | 0.9776 | yes | no |
| Q9C102 | GLT1_SCHPO | 1, ., 4, ., 1, ., 1, 3 | 0.5450 | 0.9107 | 0.7593 | yes | no |
| P96218 | GLTB_MYCTU | 1, ., 4, ., 1, ., 1, 3 | 0.5058 | 0.8488 | 0.9783 | yes | no |
| Q9LV03 | GLUT1_ARATH | 1, ., 4, ., 1, ., 1, 4 | 0.8409 | 0.9937 | 0.7921 | yes | no |
| P55037 | GLTB_SYNY3 | 1, ., 4, ., 7, ., 1 | 0.5349 | 0.8551 | 0.9709 | N/A | no |
| Q0JKD0 | GLT1_ORYSJ | 1, ., 4, ., 1, ., 1, 4 | 0.7993 | 0.9289 | 0.7544 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 1.4.1.14 | 0.991 |
| 3rd Layer | 1.4.1 | 0.976 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | estExt_fgenesh4_pg.C_LG_XV0172 | hypothetical protein (2222 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | estExt_fgenesh4_pg.C_LG_VII0739 | RecName- Full=Glutamine synthetase; EC=6.3.1.2; (356 aa) | • | • | 0.905 | ||||||
 | estExt_fgenesh4_pm.C_LG_XII0003 | RecName- Full=Glutamine synthetase; EC=6.3.1.2; (356 aa) | • | • | 0.905 | ||||||
 | estExt_fgenesh4_pg.C_1220090 | RecName- Full=Glutamine synthetase; EC=6.3.1.2; (356 aa) | • | • | 0.905 | ||||||
 | estExt_Genewise1_v1.C_LG_V3325 | glutamine synthetase (EC-6.3.1.2) (356 aa) | • | • | 0.905 | ||||||
 | gw1.97.87.1 | hypothetical protein (637 aa) | • | • | • | 0.905 | |||||
 | gw1.IV.836.1 | amidophosphoribosyltransferase (EC-2.4.2.14) (485 aa) | • | • | 0.905 | ||||||
 | estExt_fgenesh4_pm.C_LG_IV0266 | glutamine synthetase (EC-6.3.1.2) (356 aa) | • | • | 0.905 | ||||||
 | gw1.IX.1498.1 | SubName- Full=Putative uncharacterized protein; (485 aa) | • | • | 0.905 | ||||||
 | estExt_Genewise1_v1.C_LG_II2125 | RecName- Full=Glutamine synthetase; EC=6.3.1.2; (358 aa) | • | • | 0.905 | ||||||
 | eugene3.00150904 | glutamate dehydrogenase (NAD(P)+) (EC-1.4.1.3) (412 aa) | • | • | 0.904 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1760 | |||
| PRK11750 | 1485 | PRK11750, gltB, glutamate synthase subunit alpha; | 0.0 | |
| cd00713 | 413 | cd00713, GltS, Glutamine amidotransferases class-I | 0.0 | |
| COG0069 | 485 | COG0069, GltB, Glutamate synthase domain 2 [Amino | 0.0 | |
| pfam01645 | 367 | pfam01645, Glu_synthase, Conserved region in gluta | 0.0 | |
| cd02808 | 392 | cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-b | 1e-168 | |
| COG0067 | 371 | COG0067, GltB, Glutamate synthase domain 1 [Amino | 1e-162 | |
| pfam04898 | 288 | pfam04898, Glu_syn_central, Glutamate synthase cen | 1e-158 | |
| cd00982 | 251 | cd00982, gltB_C, gltb_C | 1e-144 | |
| COG0070 | 301 | COG0070, GltB, Glutamate synthase domain 3 [Amino | 1e-118 | |
| pfam01493 | 198 | pfam01493, GXGXG, GXGXG motif | 6e-79 | |
| cd00504 | 149 | cd00504, GXGXG, GXGXG domain | 7e-69 | |
| pfam00310 | 223 | pfam00310, GATase_2, Glutamine amidotransferases c | 5e-64 | |
| cd00352 | 220 | cd00352, Gn_AT_II, Glutamine amidotransferases cla | 7e-31 | |
| pfam00310 | 223 | pfam00310, GATase_2, Glutamine amidotransferases c | 9e-16 | |
| PRK12810 | 471 | PRK12810, gltD, glutamate synthase subunit beta; R | 1e-12 | |
| TIGR01317 | 485 | TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH | 1e-12 | |
| cd01907 | 249 | cd01907, GlxB, Glutamine amidotransferases class-I | 2e-09 | |
| cd00981 | 232 | cd00981, arch_gltB, Archaeal-type gltB domain | 4e-07 | |
| cd00980 | 203 | cd00980, FwdC/FmdC, FwdC/FmdC | 1e-05 | |
| TIGR03122 | 260 | TIGR03122, one_C_dehyd_C, formylmethanofuran dehyd | 7e-05 | |
| COG2218 | 264 | COG2218, FwdC, Formylmethanofuran dehydrogenase su | 3e-04 | |
| cd00980 | 203 | cd00980, FwdC/FmdC, FwdC/FmdC | 4e-04 |
| >gnl|CDD|236968 PRK11750, gltB, glutamate synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Score = 1674 bits (4338), Expect = 0.0
Identities = 694/1544 (44%), Positives = 945/1544 (61%), Gaps = 70/1544 (4%)
Query: 104 GLYDPKFDKDSCGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILVA 163
GLYDP ++D+CG G +A + GE S K + A+ L RM HRG + TGDG G+L+
Sbjct: 4 GLYDPSLERDNCGFGLIAHMEGEPSHKLVRTAIHALARMTHRGGIAADGKTGDGCGLLLQ 63
Query: 164 LPHDFFKEAAKNVGFQLPPPGEYAVGMFFLPQSENRREESKKVFTKVAESLGHTVLGWRA 223
P FF+ A+ G++L YAVGM FL Q ++++ + + +V+GWR
Sbjct: 64 KPDRFFRAVAEEAGWRLAK--NYAVGMVFLNQDPELAAAARRILEEELQRETLSVVGWRE 121
Query: 224 VPTDNSGLGNSALQTEPVVEQVFL-TPSLRSKVDFENQMYILRRVSMAAIRESLNLEHGG 282
VPT+ S LG AL + P +EQVF+ P+ + DFE +++I RR + +
Sbjct: 122 VPTNPSVLGEIALSSLPRIEQVFVNAPAGWRERDFERRLFIARRRIEKRLADD------- 174
Query: 283 AKDFYICSLSSRTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRA 342
KDFY+CSLS+ ++YKG + P + +Y DL + R S + + H RFSTNT P W A
Sbjct: 175 -KDFYVCSLSNLVIIYKGLMMPADLPRFY-LDLADLRLESAICVFHQRFSTNTLPRWPLA 232
Query: 343 QPMRILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDG 402
QP R L HNGEINT+ GN W +AR + + ++++ P V+ + SDS + D
Sbjct: 233 QPFRYLAHNGEINTITGNRQWARARAYKFQTPLI----PDLQEAAPFVNETGSDSSSLDN 288
Query: 403 VLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDGR 462
+LELL+ G L A+ +++P AWQN+ +MDP +A YE+ S MEPWDGPA I TDGR
Sbjct: 289 MLELLLAGGMDLFRAMRLLVPPAWQNNPDMDPDLRAFYEFNSMHMEPWDGPAGIVMTDGR 348
Query: 463 YLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVDFEKRI 522
Y LDRNGLRP R+ IT + +ASEVG+ D P++V+ KGR+ PG +L++D
Sbjct: 349 YAACNLDRNGLRPARYVITKDKLITLASEVGIWDYQPDEVVEKGRVGPGELLVIDTRTGR 408
Query: 523 VVDDEALKQQYSLARPYGEWLQRQKIELKNIVESIHKSERVSPGIAGVLPASNDDDNMEN 582
++ + PY EWL++ L E + V DDD
Sbjct: 409 ILHSAEIDNDLKSRHPYKEWLEKNVRRLVPFEELPDEQ---------VGSRELDDDT--- 456
Query: 583 MGIHGLLAPLKAFGYTVEALEMLMLPMAKDGTEALGSMGNDAPLAVMSNREKLTFEYFKQ 642
L + K F Y+ E L+ ++ +A++G EA+GSMG+D P+AV+S++ + ++YF+Q
Sbjct: 457 -----LKSYQKQFQYSFEELDQVIRVLAENGQEAVGSMGDDTPMAVLSSQPRSIYDYFRQ 511
Query: 643 MFAQVTNPPIDPIREKIVTSMECMIGPEGVLTETTEEQCHRLSLKGPLLSIEEMEAIKRM 702
FAQVTNPPIDP+RE V S+ IG E + TE HR+ K P+LS + + + +
Sbjct: 512 QFAQVTNPPIDPLREAHVMSLATCIGREMNVFCETEGHAHRVIFKSPVLSYSDFKQLTTL 571
Query: 703 NYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRVAVS 762
+ +R+ LD+ Y D GLE + R+C EA A+++G LLVLSDR + R+ +
Sbjct: 572 DEEHYRADTLDLNY--DPEETGLEAAIKRLCDEAEQAVRDGTVLLVLSDRNIAKGRLPIP 629
Query: 763 SLLAVGAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAICPYLATEAIWRLQ 822
+ +AVGAV H LV R +IVE+A R+ HHF L+GFGA A+ PYLA E + L
Sbjct: 630 AAMAVGAVQHRLVDKGLRCDANIIVETASARDPHHFAVLLGFGATAVYPYLAYETLGDLV 689
Query: 823 VDGKIPPKASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEALGLSSE 882
G+I +++ Y K N G+ K+++KMGIST+ASY+G+Q+FEA+GL +
Sbjct: 690 DTGEILKDYR-------QVMLNYRKGINKGLYKIMSKMGISTIASYRGSQLFEAVGLHDD 742
Query: 883 VIEKCFAGTPSRVDGATFEVLASDALHLHELAFPTRI-LPPGSAEAVALPNPGDYHWRKG 941
V++ CF G SR+ GA+FE D +L + A+ R + G G + G
Sbjct: 743 VVDLCFKGVVSRIGGASFEDFEQDQKNLSKRAWLARKPIDQG----------GLLKYVHG 792
Query: 942 GEIHLNDPLAIAKLQEAARGNSVAAYKEYSKRIQELNKTCNLRGLLKFKEADVKIPLEEV 1001
GE H +P + LQ+A + + Y+EY+K + E LR LL K AD IPL+EV
Sbjct: 793 GEYHAYNPDVVNTLQKAVQSGDYSDYQEYAKLVNE-RPVATLRDLLALKPADNPIPLDEV 851
Query: 1002 EPASEIVKRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMN 1061
EPA E+ KRF + AMS G++S EAH LA AMN++GG+SN+GEGGE P+R G+
Sbjct: 852 EPAEELFKRFDSAAMSIGALSPEAHEALAIAMNRLGGRSNSGEGGEDPARY-----GTE- 905
Query: 1062 PKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTA 1121
K S IKQVASGRFGV+ YL NA+ LQIK+AQGAKPGEGG+LPG KV IA R S
Sbjct: 906 -KVSKIKQVASGRFGVTPAYLVNAEVLQIKVAQGAKPGEGGQLPGDKVNPLIARLRYSVP 964
Query: 1122 GVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHV 1181
GV LISPPPHHDIYSIEDLAQLI+DLK NP A +SVKLVSE GVG IA+GV K +AD +
Sbjct: 965 GVTLISPPPHHDIYSIEDLAQLIFDLKQVNPKALVSVKLVSEPGVGTIATGVAKAYADLI 1024
Query: 1182 LISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAI 1241
ISG+DGGTGAS T +K AG PWELGLAETHQ LVAN LR + LQ DG LKTG DV
Sbjct: 1025 TISGYDGGTGASPLTSVKYAGSPWELGLAETHQALVANGLRHKIRLQVDGGLKTGLDVIK 1084
Query: 1242 AALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREK-FAGEPEHVINFFF 1300
AA+LGAE FGF T P++ LGC +R CH N C G+ATQD LR+ + G PE V+N+F
Sbjct: 1085 AAILGAESFGFGTGPMVALGCKYLRICHLNNCATGVATQDEKLRKNHYHGLPEMVMNYFE 1144
Query: 1301 MLAEELREIMSQLGFRTITEMIGRSDMLEVDKEVTKTNEKLENIDLSLLLRPAADLRPEA 1360
+AEE RE M+QLG R++ ++IGR+D+LE + K + +DLS LL A+
Sbjct: 1145 FIAEETREWMAQLGVRSLEDLIGRTDLLEE---LEGETAKQQKLDLSPLLE-TAEPPAGK 1200
Query: 1361 AQYCVQKQDHGLDMA-LDQKLIKLSKAALEKALPVYIETPVCNVNRAVGTMLSHEVTKRY 1419
A YC ++++ D L++++++ +K A+E + N +R+VG LS E+ +R+
Sbjct: 1201 ALYCTEERNPPFDKGLLNEQMLQQAKPAIEAKQGGEFWFDIRNTDRSVGARLSGEIARRH 1260
Query: 1420 HLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPKGSL 1479
G+ I ++ TG+AGQS G + G+ L LEGD+NDYVGKG++GGKIV PP GS
Sbjct: 1261 GNQGMADAPIKLRFTGTAGQSFGVWNAGGLELYLEGDANDYVGKGMAGGKIVIRPPVGSA 1320
Query: 1480 FDPKVNIVIGNVALYGATSGEAYFNGMAAERFCVRNSGARAVVEGVGDHGCEYMTGGTVV 1539
F +IGN LYGAT G+ + G A ERF VRNSGA AVVEG+GDHGCEYMTGG V
Sbjct: 1321 FRSHETAIIGNTCLYGATGGKLFAAGRAGERFAVRNSGAIAVVEGIGDHGCEYMTGGIVC 1380
Query: 1540 VLGKTGRNFAAGMSGGIAYVLDVDGKFRSRCNPELVDLDKVEEEEDI-ITLRMMIQQHQR 1598
VLGKTG NF AGM+GG AYVLD DG F R N ELV++ +VE+ E LR +I +H
Sbjct: 1381 VLGKTGVNFGAGMTGGFAYVLDEDGDFVDRVNHELVEILRVEDLEIHREHLRGLITEHVE 1440
Query: 1599 YTNSQLAKEVLADFENLLPKFIKVFPR--DYKRVLASMKVAAAQ 1640
T S+ +E+LA+F++ L KF V P+ D K +L +AA+
Sbjct: 1441 ETGSEWGEEILANFDDYLRKFWLVKPKAADVKALLGHRSRSAAE 1484
|
Length = 1485 |
| >gnl|CDD|238365 cd00713, GltS, Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type | Back alignment and domain information |
|---|
Score = 702 bits (1814), Expect = 0.0
Identities = 244/424 (57%), Positives = 302/424 (71%), Gaps = 12/424 (2%)
Query: 115 CGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILVALPHDFFKEAAK 174
CGVGFVA + G+ S + DALE L RM HRG G + TGDGAGIL+ +PH+FF+E
Sbjct: 1 CGVGFVANIDGKPSHDIVQDALEALERMEHRGGVGADGKTGDGAGILIQIPHEFFREELA 60
Query: 175 NVGFQLPPPGEYAVGMFFLPQSENRREESKKVFTKVAESLGHTVLGWRAVPTDNSGLGNS 234
G +LP GEYAVGM FLP+ E RE +K + + E+ G VLGWR VP DNS LG +
Sbjct: 61 EAGIELPEAGEYAVGMLFLPRDEEAREAAKAIIEEELEAEGLRVLGWRDVPVDNSVLGPT 120
Query: 235 ALQTEPVVEQVFLT-PSLRSKVDFENQMYILRRVSMAAIRESLNLEHGGAKDFYICSLSS 293
A TEP++EQVF+ PS FE ++Y+LR+ AIR + +DFY+CSLSS
Sbjct: 121 ARATEPLIEQVFVGAPSGDDGEAFERKLYLLRKRIEKAIRAA-------DEDFYVCSLSS 173
Query: 294 RTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRILGHNGE 353
RT+VYKG L P Q+ +Y DL + RF S AL+HSRFSTNTFPSW AQP R L HNGE
Sbjct: 174 RTIVYKGMLLPEQL-GQFYPDLQDPRFESAFALVHSRFSTNTFPSWPLAQPFRYLAHNGE 232
Query: 354 INTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRS 413
INT+RGN NWM+AREGLLK G +++KKL PI++ SDS + D VLELLVR+GRS
Sbjct: 233 INTIRGNRNWMRAREGLLKSPLFG---EDLKKLKPIINPGGSDSASLDNVLELLVRSGRS 289
Query: 414 LPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGL 473
LPEA+MM+IPEAWQN+ MDP+ +A YEY S+LMEPWDGPA I+FTDGR +GA+LDRNGL
Sbjct: 290 LPEAMMMLIPEAWQNNPTMDPELRAFYEYHSSLMEPWDGPAAIAFTDGRQVGASLDRNGL 349
Query: 474 RPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVDFEKRIVVDDEALKQQY 533
RP R+ IT G +IM+SEVGVVD+PPE V+ KGRL PG MLLVD E+ ++DDE +K Q
Sbjct: 350 RPARYVITKDGLLIMSSEVGVVDVPPEKVVEKGRLGPGEMLLVDLEEGRILDDEEIKDQL 409
Query: 534 SLAR 537
+
Sbjct: 410 AKRH 413
|
GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits. Length = 413 |
| >gnl|CDD|223147 COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 692 bits (1788), Expect = 0.0
Identities = 281/498 (56%), Positives = 340/498 (68%), Gaps = 21/498 (4%)
Query: 837 SKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEALGLSSEVIEKCFAGTPSRVD 896
S +E +K Y KA G++K+++KMGISTLASY+GAQ+FEA+GLS++V++ F GT +R+
Sbjct: 2 SLEEALKNYIKAIEKGLLKIMSKMGISTLASYRGAQLFEAVGLSADVVDLYFPGTETRIG 61
Query: 897 GATFEVLASDALHLHELAFPTRILPPGSAEAVALPNPGDYHWRKGGEIHLNDPLAIAKLQ 956
G + + +A + H A + A L G R GGE H DP + LQ
Sbjct: 62 GISLDEIAQEISRRHRTAGAVK--------AKELDVGGFGTERDGGEPHFYDPDTLFALQ 113
Query: 957 EAAR-GNSVAAYKEYSKRIQELNKTCNLRGLLKFK-EADVKIPLEEVEPASEIVKRFCTG 1014
A R YKEYS I LR LL F + IP+EEVEP E+ KRF TG
Sbjct: 114 VATRSEGGYREYKEYSVLIGTRAS-TTLRDLLDFIADGSKPIPIEEVEPVLELKKRFVTG 172
Query: 1015 AMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRSAIKQVASGR 1074
AMS+G++S EAH LA AMN+IG KSNTGEGGE P R E RSAIKQVASGR
Sbjct: 173 AMSFGALSKEAHEALARAMNRIGTKSNTGEGGEDPERYED--------GRSAIKQVASGR 224
Query: 1075 FGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHHDI 1134
FGV+ YL NAD ++IK+AQGAKPGEGG+LPG KV +IA TR S GVGLISPPPHHDI
Sbjct: 225 FGVTPEYLANADAIEIKIAQGAKPGEGGQLPGEKVTPEIAKTRGSPPGVGLISPPPHHDI 284
Query: 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASR 1194
YSIEDLAQLI DLK ANP A+ISVKLV+E GVG IA+GV K AD + I G DGGTGAS
Sbjct: 285 YSIEDLAQLIKDLKEANPWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASP 344
Query: 1195 WTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFST 1254
T I +AG+PWELGLAETHQTLV N LR + L DG L+TG DVA AA LGA+ GF T
Sbjct: 345 LTSIDHAGIPWELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGT 404
Query: 1255 APLITLGCIMMRKCHKNTCPVGIATQDPVLREK--FAGEPEHVINFFFMLAEELREIMSQ 1312
A L+ LGCIM R CH TCPVGIATQDP LR++ G+PE VIN+F +AEELRE+++
Sbjct: 405 AALVALGCIMCRVCHTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFVAEELRELLAA 464
Query: 1313 LGFRTITEMIGRSDMLEV 1330
LG R+++E+IGR+D+L
Sbjct: 465 LGKRSLSELIGRTDLLRT 482
|
Length = 485 |
| >gnl|CDD|110632 pfam01645, Glu_synthase, Conserved region in glutamate synthase | Back alignment and domain information |
|---|
Score = 611 bits (1578), Expect = 0.0
Identities = 233/374 (62%), Positives = 268/374 (71%), Gaps = 9/374 (2%)
Query: 945 HLNDPLAIAKLQEAARGNSVAAYKEYSKRIQELNKTCNLRGLLKFKEADVKIPLEEVEPA 1004
H N+P I LQ+A + S +Y +Y + + E LR LL+F A+ IP+EEVEPA
Sbjct: 1 HRNEPEVIKTLQKAVQVESYPSYDKYREPLNERVPIGALRDLLEFDYAEDPIPIEEVEPA 60
Query: 1005 SEIVKRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKR 1064
EI RFCTGAMSYG++S EAH LA AMN++G KSNTGEGGE P R++ +DG
Sbjct: 61 LEIKTRFCTGAMSYGALSEEAHEALAKAMNRLGTKSNTGEGGEDPERLKYAADG------ 114
Query: 1065 SAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVG 1124
AIKQVASGRFGV+ YL NAD ++IK+AQGAKPGEGG LPG KV +IA R S GVG
Sbjct: 115 -AIKQVASGRFGVTPEYLNNADAIEIKIAQGAKPGEGGHLPGEKVSPEIARIRGSPPGVG 173
Query: 1125 LISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLIS 1184
LISPPPHHDIYSIEDLAQLIYDLK NP A ISVKLVS GVG IA+GV K AD +LI
Sbjct: 174 LISPPPHHDIYSIEDLAQLIYDLKEINPKAPISVKLVSGHGVGTIAAGVAKAGADIILID 233
Query: 1185 GHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAAL 1244
GHDGGTGAS T IK+AGLPWEL LAE HQTLV N LR R L DG L+TG DVA AA
Sbjct: 234 GHDGGTGASPKTSIKHAGLPWELALAEVHQTLVENGLRDRVSLIADGGLRTGADVAKAAA 293
Query: 1245 LGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLRE--KFAGEPEHVINFFFML 1302
LGA+ TA LI LGCIM R CH NTCPVG+ATQDP LR+ F G PE V+N+F L
Sbjct: 294 LGADAVYIGTAALIALGCIMCRVCHTNTCPVGVATQDPELRKRLDFEGAPERVVNYFRFL 353
Query: 1303 AEELREIMSQLGFR 1316
AEE+RE+++ LGF
Sbjct: 354 AEEVRELLAALGFN 367
|
This family represents a region of the glutamate synthase protein. This region is expressed as a separate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster. Length = 367 |
| >gnl|CDD|239202 cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain | Back alignment and domain information |
|---|
Score = 514 bits (1326), Expect = e-168
Identities = 194/398 (48%), Positives = 228/398 (57%), Gaps = 27/398 (6%)
Query: 949 PLAIAKLQEAARG--NSVAAYKEYSKRIQELNKT-CNLRGLLKFKEADVKIPLEE----- 1000
L I +L+E N Y Y++ + LR LL+F K PLE
Sbjct: 2 LLEIERLEEIQYFVFNRAERYGVYNRAGNSRGRPFGTLRDLLEFGAQLAKHPLEPDEEVD 61
Query: 1001 --------VEPASEIVKRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRM 1052
E ++ F AMS+G++S EA LA G SNTGEGGE P
Sbjct: 62 DRVTIGPNAEKPLKLDSPFNISAMSFGALSKEAKEALAIGAALAGTASNTGEGGELPEER 121
Query: 1053 EPLSDGSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGD 1112
E IKQVASGRFGV YL AD ++IK+ QGAKPGEGG LPG KV +
Sbjct: 122 EG--------GGDIIKQVASGRFGVRPEYLNKADAIEIKIGQGAKPGEGGHLPGEKVTEE 173
Query: 1113 IAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASG 1172
IA R GV LISPPPHHDIYSIEDLAQLI DL+ A G I VKLV+ G G IA+G
Sbjct: 174 IAKIRGIPPGVDLISPPPHHDIYSIEDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAG 233
Query: 1173 VVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQ 1232
V AD + I G +GGTGA+ T I + GLP ELGLA HQ LV N LR R L G
Sbjct: 234 VAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIASGG 293
Query: 1233 LKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLRE--KFAG 1290
L+TG DVA A LGA+ G TA LI LGCI RKCH NTCPVG+ATQDP LR G
Sbjct: 294 LRTGADVAKALALGADAVGIGTAALIALGCIQARKCHTNTCPVGVATQDPELRRRLDVEG 353
Query: 1291 EPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDML 1328
+ E V N+ LAEELRE+ + LG R++ E++GRSD+L
Sbjct: 354 KAERVANYLKSLAEELRELAAALGKRSL-ELLGRSDLL 390
|
GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. Length = 392 |
| >gnl|CDD|223145 COG0067, GltB, Glutamate synthase domain 1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 497 bits (1281), Expect = e-162
Identities = 194/392 (49%), Positives = 247/392 (63%), Gaps = 21/392 (5%)
Query: 103 LGLYDPKFDKDSCGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILV 162
GLYDP F+ D+CG+G +A G S K + DALE LV + HRGA G + GDGAGIL+
Sbjct: 1 QGLYDPAFEHDACGIGGIAHKDGRPSHKIVEDALEALVNLTHRGAPGADGYAGDGAGILL 60
Query: 163 ALPHDFFKEAAKNVGFQLPPPGEYAVGMFFLPQSENRREESKKVFTKVAESLGHTVLGWR 222
+P FF+E A G +LP G YAVGM FLPQ R ++++ + A + G +VLGWR
Sbjct: 61 QIPDYFFREEADK-GIKLPEAGFYAVGMVFLPQ---ERAAAREIPEEEAVAEGLSVLGWR 116
Query: 223 AVPTDNSGLGNSALQTEPVVEQVFLTPSLRSKVDFENQMYILRRVSMAAIRESLNLEHGG 282
VP ++S LG AL T P +EQVF+ S DFE ++I R+ +E
Sbjct: 117 DVPVNSSVLGEVALATMPRIEQVFIGASGD---DFERVLFIARK----------RIEKRI 163
Query: 283 AKDFYICSLSSRTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRA 342
DFY+CSLSSRT+VYKG P + ++Y DL +ER+ S +AL+H+RFSTNTFPSW A
Sbjct: 164 GADFYVCSLSSRTIVYKGVGLPEDVAEFY-LDLDDERYKSAIALVHTRFSTNTFPSWPLA 222
Query: 343 QPMRILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDG 402
P R+L HNGEINT GN NW++AR E + + KLLPI+ SDS + D
Sbjct: 223 HPFRLLVHNGEINTYGGNRNWLEARGYKF---ESPTDGEVLAKLLPILMRGGSDSASLDN 279
Query: 403 VLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDGR 462
LELL+ GR L A M++ PEAW +MDP+ +A YE SALMEPWDGPA I FTDG
Sbjct: 280 ALELLLLGGRDLYHAAMLLGPEAWVVGTDMDPEGRAFYEDHSALMEPWDGPADIVFTDGS 339
Query: 463 YLGATLDRNGLRPGRFYITHSGRVIMASEVGV 494
GA LDRNGLRP R++IT G V++ASE GV
Sbjct: 340 EEGAILDRNGLRPARYWITKDGEVVVASEAGV 371
|
Length = 371 |
| >gnl|CDD|218318 pfam04898, Glu_syn_central, Glutamate synthase central domain | Back alignment and domain information |
|---|
Score = 483 bits (1245), Expect = e-158
Identities = 162/294 (55%), Positives = 212/294 (72%), Gaps = 6/294 (2%)
Query: 588 LLAPLKAFGYTVEALEMLMLPMAKDGTEALGSMGNDAPLAVMSNREKLTFEYFKQMFAQV 647
LL KAFGYT E +E+++LPMA+ G EALGSMG+D PLAV+S + +L ++YFKQ+FAQV
Sbjct: 1 LLRRQKAFGYTYEDVELVLLPMAETGKEALGSMGDDTPLAVLSEKPRLLYDYFKQLFAQV 60
Query: 648 TNPPIDPIREKIVTSMECMIGPEGVLTETTEEQCHRLSLKGPLLSIEEMEAIKRMNYRGW 707
TNPPIDPIRE+IV S+E +GPEG L E T EQ RL L P+LS E+EA+K +N G+
Sbjct: 61 TNPPIDPIREEIVMSLETYLGPEGNLLEPTPEQARRLKLDSPILSNSELEALKNLNEEGF 120
Query: 708 RSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRVAVSSLLAV 767
++ +DIT+ D G GLE LDR+C EA +A++ G T++VLSDR +RVA+ +LLAV
Sbjct: 121 KAATIDITFDVDEGVDGLEAALDRLCEEAEEAVRSGATIIVLSDRNLDEERVAIPALLAV 180
Query: 768 GAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAICPYLATEAIWRLQVDGKI 827
GAVHHHL++ RT++ L+VE+ E REVHHF L+G+GA AI PYLA E I L G +
Sbjct: 181 GAVHHHLIRKGLRTKVSLVVETGEAREVHHFAVLIGYGASAINPYLAYETIRDLHRRGLL 240
Query: 828 PPKASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEALGLSS 881
S +E VK Y KA G++K+++KMGISTL SY+GAQIFEA+GLS
Sbjct: 241 KEL------SLEEAVKNYRKAIEKGLLKIMSKMGISTLQSYRGAQIFEAVGLSR 288
|
The central domain of glutamate synthase connects the amino terminal amidotransferase domain with the FMN-binding domain and has an alpha / beta overall topology. This domain appears to be a rudimentary form of the FMN-binding TIM barrel according to SCOP. Length = 288 |
| >gnl|CDD|238482 cd00982, gltB_C, gltb_C | Back alignment and domain information |
|---|
Score = 445 bits (1146), Expect = e-144
Identities = 164/251 (65%), Positives = 194/251 (77%), Gaps = 1/251 (0%)
Query: 1376 LDQKLIKLSK-AALEKALPVYIETPVCNVNRAVGTMLSHEVTKRYHLVGLPADTIHIKLT 1434
LD KLI ++ A +E PV +E P+ N +RAVGTMLS E+ KRY GLP DTI IK
Sbjct: 1 LDDKLIADAEPALIENGEPVTLEYPIRNTDRAVGTMLSGEIAKRYGEEGLPEDTIKIKFE 60
Query: 1435 GSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALY 1494
GSAGQS GAFL G+ LELEGD+NDYVGKGLSGG+IV PPK + F P+ NI+IGNV LY
Sbjct: 61 GSAGQSFGAFLAKGVTLELEGDANDYVGKGLSGGRIVVRPPKDATFKPEENIIIGNVCLY 120
Query: 1495 GATSGEAYFNGMAAERFCVRNSGARAVVEGVGDHGCEYMTGGTVVVLGKTGRNFAAGMSG 1554
GATSGEA+ G A ERF VRNSGA AVVEGVGDHGCEYMTGGTVVVLGKTGRNFAAGMSG
Sbjct: 121 GATSGEAFIRGRAGERFAVRNSGATAVVEGVGDHGCEYMTGGTVVVLGKTGRNFAAGMSG 180
Query: 1555 GIAYVLDVDGKFRSRCNPELVDLDKVEEEEDIITLRMMIQQHQRYTNSQLAKEVLADFEN 1614
G+AYVLD DG F + N E+VDL+++E+ ED L+ +I++H YT S+ AKE+LA++E
Sbjct: 181 GVAYVLDEDGDFEKKVNHEMVDLERLEDAEDEEQLKELIEEHVEYTGSEKAKEILANWEA 240
Query: 1615 LLPKFIKVFPR 1625
L KF+KV PR
Sbjct: 241 YLKKFVKVIPR 251
|
This domain is found at the C-terminus of the large subunit (gltB) of glutamate synthase (GltS). GltS encodes a complex iron-sulfur flavoprotein that catalyzes the synthesis of L-glutamate from L-glutamine and 2-oxoglutarate. It requires the transfer of ammonia and electrons among three distinct active centers that carry out L-Gln hydrolysis, conversion of 2-oxoglutarate into L-Glu, and electron uptake from a donor. These catalytic sites appear to occur in other domains within the protein, and not the domain in this CD. This particular domain has no known function, but it likely has a structural role as it interacts with the amidotransferase and FMN-binding domains of gltS. Length = 251 |
| >gnl|CDD|223148 COG0070, GltB, Glutamate synthase domain 3 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 375 bits (965), Expect = e-118
Identities = 157/308 (50%), Positives = 195/308 (63%), Gaps = 9/308 (2%)
Query: 1342 ENIDLSLLLRPAADLRPEAAQYCVQKQDHGLDMALDQKLIKLSKAALEKALPVYIETPVC 1401
+ +DLS LL P + YC ++QDHGL+ LD KL+ K ALE V I +
Sbjct: 2 KGLDLSPLLYP-----EDPNTYCEKRQDHGLEPVLDAKLL-EDKPALENGEIVKILAEIR 55
Query: 1402 NVNRAVGTMLSHEVTKRYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYV 1461
NV+R+VG LS E+ K Y L GLP DT+ I GSAGQS GAF G LEL GD+NDYV
Sbjct: 56 NVDRSVGANLSGEIAKGYGLQGLPEDTVEINFNGSAGQSFGAFNAKGPTLELNGDANDYV 115
Query: 1462 GKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCVRNSGARAV 1521
GKG+SGGKIV P + F + NI++GN LYGAT GE + G A ERF VRNSGA AV
Sbjct: 116 GKGMSGGKIVVRGP--ARFKAEANIIVGNTVLYGATGGELFIRGNAGERFGVRNSGATAV 173
Query: 1522 VEGVGDHGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYVLDVDGK-FRSRCNPELVDLDKV 1580
VEG+GDHGCEYMTGG VVVLG TGRNF AGMSGG+AYV G F N ELV+L+ +
Sbjct: 174 VEGIGDHGCEYMTGGRVVVLGDTGRNFGAGMSGGVAYVRGEVGSDFPLGVNAELVELESL 233
Query: 1581 EEEEDIITLRMMIQQHQRYTNSQLAKEVLADFENLLPKFIKVFPRDYKRVLASMKVAAAQ 1640
EE++ L+ +I++H YT S+ AKE+L ++E KF+KV PR+Y+ L A A
Sbjct: 234 TEEDEEEKLKELIEEHVEYTGSEKAKEILENWELYEEKFVKVKPREYRPFLLLNADAEAA 293
Query: 1641 EAAEDAVK 1648
+
Sbjct: 294 GEDFTEAQ 301
|
Length = 301 |
| >gnl|CDD|201826 pfam01493, GXGXG, GXGXG motif | Back alignment and domain information |
|---|
Score = 258 bits (662), Expect = 6e-79
Identities = 96/199 (48%), Positives = 122/199 (61%), Gaps = 3/199 (1%)
Query: 1396 IETPVCNVNRAVGTMLSHEVTKRYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEG 1455
+ + N +R VGT LS ++TK+Y GL DT I GSAGQS GAF+ G+ LE+EG
Sbjct: 1 KDEAIINTDRLVGTDLSGKITKKYGEEGLK-DTGEIVFNGSAGQSFGAFMKGGVTLEVEG 59
Query: 1456 DSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCVRN 1515
D+NDYVGKG+SGG+IV G + N + GN LYGAT G + G A ERF VRN
Sbjct: 60 DANDYVGKGMSGGEIVIKGNAGDAGEYVGNGIAGNTVLYGATGGTIFIEGDAGERFGVRN 119
Query: 1516 SGARAVVEG-VGDHGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYVLDVDGK-FRSRCNPE 1573
SG V+EG GDHG EYMTGG +VVLG GRN AGM+GG YVL N E
Sbjct: 120 SGGEIVIEGNAGDHGGEYMTGGRIVVLGDAGRNVGAGMTGGTIYVLGEIEDGLPGFVNLE 179
Query: 1574 LVDLDKVEEEEDIITLRMM 1592
+V+ +++E+ E L+ +
Sbjct: 180 IVEEERIEDPEGEKQLKEL 198
|
This domain is found in glutamate synthase, tungsten formylmethanofuran dehydrogenase subunit c (FwdC) and molybdenum formylmethanofuran dehydrogenase subunit c (FmdC). A repeated G-XX-G-XXX-G motif is seen in the alignment. Length = 198 |
| >gnl|CDD|238281 cd00504, GXGXG, GXGXG domain | Back alignment and domain information |
|---|
Score = 227 bits (581), Expect = 7e-69
Identities = 92/158 (58%), Positives = 107/158 (67%), Gaps = 10/158 (6%)
Query: 1405 RAVGTMLSHEVTKRYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKG 1464
RAVGT S + KR GLP DT+ I + GSAGQS GAF G + +EG++NDYVGKG
Sbjct: 1 RAVGTRGSRYIGKRP---GLPEDTVEIIINGSAGQSFGAF-MAGGTITVEGNANDYVGKG 56
Query: 1465 LSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCVRNSGARAVVEG 1524
+SGG+IV +PP G N + GNVALYGAT G+ + G A ERF VR SG VVEG
Sbjct: 57 MSGGEIVIHPPAGDE-----NGIAGNVALYGATGGKIFVRGNAGERFGVRMSGGTIVVEG 111
Query: 1525 VGD-HGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYVLD 1561
VGD G EYMTGGT+VVLG GRNF AGMSGG+ YV
Sbjct: 112 VGDDFGGEYMTGGTIVVLGDAGRNFGAGMSGGVIYVRG 149
|
This domain of unknown function is found at the C-terminus of the large subunit (gltB) of glutamate synthase (GltS), in subunit C of tungsten formylmethanofuran dehydrogenase (FwdC) and in subunit C of molybdenum formylmethanofuran dehydrogenase (FmdC). It is also found in a primarily archeal group of proteins predicted to encode part of the large subunit of GltS. It is characterized by a repeated GXXGXXXG motif. GltS is a complex iron-sulfur flavoprotein that catalyzes the synthesis of L-glutamate from L-glutamine and 2-oxoglutarate. It requires the transfer of ammonia and electrons among three distinct active centers that carry out L-Gln hydrolysis, conversion of 2-oxoglutarate into L-Glu, and electron uptake from a donor. These catalytic sites occur in other domains within the protein or or encoded by separate genes, and are not present in the domain in this CD. FwdC and FmdC are reversible ion pumps that catalyze the formylation and deformylation of methanofuran in hyperthermophiles and bacteria. They require the presence of either tungstun (FwdC) or molybdenum (FmdC). The specific function of this domain also remains unidentified in the formylmethanofuran dehydrogenases. Length = 149 |
| >gnl|CDD|215851 pfam00310, GATase_2, Glutamine amidotransferases class-II | Back alignment and domain information |
|---|
Score = 216 bits (553), Expect = 5e-64
Identities = 94/184 (51%), Positives = 114/184 (61%), Gaps = 40/184 (21%)
Query: 313 ADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMR----ILGHNGEINTLRGNVNWMKARE 368
L +ERF S +A++H+RFSTN FPSW+ A P R +L HNGEINTLRG NWM+ARE
Sbjct: 76 FYLQDERFKSALAIVHTRFSTNGFPSWENAHPFRREGWVLAHNGEINTLRGLRNWMRARE 135
Query: 369 GLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQN 428
G+ S SDS AFD +LELLVRAGRS
Sbjct: 136 GVFN--------------------SGSDSEAFDNLLELLVRAGRS--------------- 160
Query: 429 DKNMDPQRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIM 488
+MDP+ +A YEY + LMEPWDGPA + FTDGRY+GATLDRNGLRP R+ IT G +++
Sbjct: 161 -PDMDPEERAFYEYLAGLMEPWDGPAALVFTDGRYVGATLDRNGLRPARYGITEDGLIVV 219
Query: 489 ASEV 492
ASE
Sbjct: 220 ASEA 223
|
Length = 223 |
| >gnl|CDD|238212 cd00352, Gn_AT_II, Glutamine amidotransferases class-II (GATase) | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 7e-31
Identities = 61/212 (28%), Positives = 75/212 (35%), Gaps = 56/212 (26%)
Query: 311 YYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMR------ILGHNGEINTLRGNVNWM 364
DL +E S +AL H R +TN PS AQP R L HNGEI R +
Sbjct: 57 VALDLLDEPLKSGVALGHVRLATNGLPSEANAQPFRSEDGRIALVHNGEIYNYRELREEL 116
Query: 365 KAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPE 424
+AR SDS +LE L R G L EAV +
Sbjct: 117 EAR--------------------GYRFEGESDSEVILHLLERLGREGG-LFEAVEDALKR 155
Query: 425 AWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDG--RYLGATLDRNGLRPGRFYITH 482
DGP + DG L A DR G+RP + IT
Sbjct: 156 -------------------------LDGPFAFALWDGKPDRLFAARDRFGIRPLYYGITK 190
Query: 483 SGRVIMASEVGVVDIPPEDVLRKGRLNPGMML 514
G ++ ASE + P RL PG +L
Sbjct: 191 DGGLVFASEPKALLALPFK--GVRRLPPGELL 220
|
The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the formation of the beta-lactam ring in the beta-lactamase inhibitor clavulanic acid. GltS synthesizes L-glutamate from 2-oxoglutarate and L-glutamine. These enzymes are generally dimers, but GPATase also exists as a homotetramer. Length = 220 |
| >gnl|CDD|215851 pfam00310, GATase_2, Glutamine amidotransferases class-II | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 9e-16
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 115 CGV-GFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILVALPHDFFKEAA 173
CG+ GF+A + G++S + DALE L R+ HRG G + N DGAGIL +P F +
Sbjct: 1 CGILGFIAHIKGKASHDVVEDALEALERLEHRGGVGADGN--DGAGILTQIPDGFGAPSE 58
Query: 174 KNVGFQLPPPGEYAVGMFFLPQSEN 198
+ + F + GE ++ F Q E
Sbjct: 59 RRL-FVIRKRGEKSIVAEFYLQDER 82
|
Length = 223 |
| >gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Score = 71.7 bits (177), Expect = 1e-12
Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 1702 RGFIAYEREGVQYRDPNIRMNDWKEVMEESKPGPLLKTQSARCMDCGTPFCHQVC 1756
GF+ Y+R + R R+ D+KE E K Q+ARCMDCG PFCH C
Sbjct: 5 TGFLEYDRVDPKKRPVAERIKDFKEFYEPF-SEEQAKIQAARCMDCGIPFCHWGC 58
|
Length = 471 |
| >gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 1e-12
Identities = 27/54 (50%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 1700 KHRGFIAYEREGVQYRDPNIRMNDWKEVMEESKPGPLLKTQSARCMDCGTPFCH 1753
K GF+ Y+R RDP R+ DWKE K Q+ARCMDCGTPFCH
Sbjct: 1 KPTGFLEYKRRKPTERDPRTRLKDWKEFTNPF-DKESAKYQAARCMDCGTPFCH 53
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. Length = 485 |
| >gnl|CDD|238888 cd01907, GlxB, Glutamine amidotransferases class-II (Gn-AT)_GlxB-type | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-09
Identities = 60/239 (25%), Positives = 89/239 (37%), Gaps = 40/239 (16%)
Query: 282 GAKDFYICSLSSRTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDR 341
G D ++ S V+KG P + Y DL E + Y + H+R TN+ W
Sbjct: 41 GDPDAFVYSSGKDMEVFKGVGYPEDIARRY--DL--EEYKGYHWIAHTRQPTNSAVWWYG 96
Query: 342 AQPMRILG----HNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDS 397
A P I HNGEI+ N +++ R G K + + +D+
Sbjct: 97 AHPFSIGDIAVVHNGEISNYGSNREYLE-RFG-YKFE------------------TETDT 136
Query: 398 GAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKAL-YEYFSALMEPWDGP-AL 455
L+LL+R G E +I + + AL Y A + DGP +
Sbjct: 137 EVIAYYLDLLLRKGGLPLEYYKHIIRMPEEERE----LLLALRLTYRLADL---DGPFTI 189
Query: 456 ISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEV-GVVDIPPEDVLRKGRLNPGMM 513
I T ++ DR LRP V +ASE + +IP D + PG
Sbjct: 190 IVGTPDGFIVIR-DRIKLRPAVVA-ETDDYVAIASEECAIREIPDRDNAKVWEPRPGEY 246
|
GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits. Length = 249 |
| >gnl|CDD|238481 cd00981, arch_gltB, Archaeal-type gltB domain | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 4e-07
Identities = 60/216 (27%), Positives = 93/216 (43%), Gaps = 36/216 (16%)
Query: 1418 RYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPKG 1477
RY GLP + I + G G +GAF+ G + + G++ D VG ++ GKIV + G
Sbjct: 37 RYIGDGLPGNV-RINIYGVPGNDLGAFM-SGPTIIVYGNAQDDVGNTMNDGKIVIH---G 91
Query: 1478 SLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCV-----RNSGARAVVEG-VGDHGCE 1531
S G+V Y G+ + G A R + ++ V+ G GD E
Sbjct: 92 S---------AGDVLGYAMRGGKIFIRGNAGYRVGIHMKEYKDKVPVLVIGGTAGDFLGE 142
Query: 1532 YMTGGTVVVLGK------TGRNFAAGMSGGIAYVLDVDGKFRSRCNPEL--VDLDKVE-E 1582
YM GG ++VLG GR GM GG+ Y+ R + ++ K E
Sbjct: 143 YMAGGVIIVLGLGTDEEPVGRYIGTGMHGGVIYI-------RGKVERSKLGKEVPKFELT 195
Query: 1583 EEDIITLRMMIQQHQRYTNSQLAKEVLADFENLLPK 1618
EED+ + I++ + A+ + +F L PK
Sbjct: 196 EEDLEFIEKYIEEFCKEFGYDKAEILDEEFTKLKPK 231
|
This domain shares sequence similarity with a region of unknown function found in the large subunit of glutamate synthase, which is encoded by gltB and found in most bacteria and eukaryotes. It is predicted to be homologous to the C-terminal domain of glutamate synthase based upon sequence similarity coupled with genome organization data, showing that this domain is found in a gene cluster with other domains of Glts, which are annotated. This domain is found primarily in archaea, but is also present in a few bacteria, likely as a result of lateral gene transfer. Length = 232 |
| >gnl|CDD|238480 cd00980, FwdC/FmdC, FwdC/FmdC | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 34/138 (24%), Positives = 51/138 (36%), Gaps = 27/138 (19%)
Query: 1430 HIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIG 1489
I + G G VGA + G L +EG++ + G + GG+I + G
Sbjct: 41 EIVVEGDVGMYVGAGMKGG-KLVVEGNAGSWAGCEMKGGEI---------------TIKG 84
Query: 1490 NVALY----------GATSGEAYFNGMAAERFCVRNSGARAVVEG-VGDHGCEYMTGGTV 1538
N Y G + G G A +R R +++G G M GGT+
Sbjct: 85 NAGDYVGSAYRGDWRGMSGGTITIEGNAGDRLGERMRRGEILIKGDAGIFAGIRMNGGTI 144
Query: 1539 VVLGKTGRNFAAGMSGGI 1556
+V G G + M G
Sbjct: 145 IVRGDAGAHPGYEMKRGT 162
|
This domain of unknown function is found in the subunit C of formylmethanofuran dehydrogenase, an enzyme that catalyzes the first step in methane formation from CO2 in methanogenic archaea, hyperthermophiles and bacteria. There are two isoenzymes, a tungsten-containing isoenzyme (Fwd) and a molybdenum-containing isoenzyme (Fmd). The subunits C of both isoenzymes (FwdC/FmdC) are characterized by a repeated GXXGXXXG motif. Length = 203 |
| >gnl|CDD|132166 TIGR03122, one_C_dehyd_C, formylmethanofuran dehydrogenase subunit C | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 7e-05
Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 15/120 (12%)
Query: 1451 LELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVN----IVIGNVALY----------GA 1496
+ +EGD +VG + GGKIV S ++ V GN Y G
Sbjct: 83 IVVEGDVGMHVGAEMKGGKIVVNGNADSWLGCEMKGGEIEVKGNAGDYVGSAYRGEWRGM 142
Query: 1497 TSGEAYFNGMAAERFCVRNSGARAVVEG-VGDHGCEYMTGGTVVVLGKTGRNFAAGMSGG 1555
+ G+ G A + R G ++EG G +M GGT+++ G GR M G
Sbjct: 143 SGGKIIVEGNAGDYLGERMRGGEILIEGNAGIFAGIHMNGGTIIIDGDVGRRPGGEMKRG 202
|
Members of this largely archaeal protein family are subunit C of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdC) from molybdenum-containing (FmdC) forms of this enzyme. Length = 260 |
| >gnl|CDD|225128 COG2218, FwdC, Formylmethanofuran dehydrogenase subunit C [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 37/114 (32%), Positives = 50/114 (43%), Gaps = 20/114 (17%)
Query: 1451 LELEGDSNDYVGKGLSGGKIV----AYPPKGSLFDPKVNIVIGNVALYGATSGEAY---F 1503
+ +EGD +VG G+ GGKIV A G + GN Y G AY +
Sbjct: 88 IIVEGDVGMHVGAGMKGGKIVVNGNADSWAGIEMKGGEIKIFGNAGDY---VGCAYRGEW 144
Query: 1504 NGMAAERFCVRNSGARAVVEG-VGDHGCEYMTGGTVVVLGKTGRNFAAGMSGGI 1556
GM SG + +VEG G+ E M GG ++V G G+ M+GG
Sbjct: 145 RGM---------SGGKIIVEGNAGNSIGELMRGGEIIVKGDAGKFTGIHMNGGT 189
|
Length = 264 |
| >gnl|CDD|238480 cd00980, FwdC/FmdC, FwdC/FmdC | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-04
Identities = 30/119 (25%), Positives = 40/119 (33%), Gaps = 43/119 (36%)
Query: 1451 LELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALY---GATSGEAYFNGMA 1507
+ +EGD YVG G+ GGK+V V GN + GE G A
Sbjct: 42 IVVEGDVGMYVGAGMKGGKLV---------------VEGNAGSWAGCEMKGGEITIKGNA 86
Query: 1508 AERFCVRNSGARAVVEGVGDH-GCEY------MTGGTVVVLGKTGRNFAAGMSGGIAYV 1559
GD+ G Y M+GGT+ + G G M G +
Sbjct: 87 ------------------GDYVGSAYRGDWRGMSGGTITIEGNAGDRLGERMRRGEILI 127
|
This domain of unknown function is found in the subunit C of formylmethanofuran dehydrogenase, an enzyme that catalyzes the first step in methane formation from CO2 in methanogenic archaea, hyperthermophiles and bacteria. There are two isoenzymes, a tungsten-containing isoenzyme (Fwd) and a molybdenum-containing isoenzyme (Fmd). The subunits C of both isoenzymes (FwdC/FmdC) are characterized by a repeated GXXGXXXG motif. Length = 203 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1760 | |||
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 100.0 | |
| PRK11750 | 1485 | gltB glutamate synthase subunit alpha; Provisional | 100.0 | |
| cd00713 | 413 | GltS Glutamine amidotransferases class-II (Gn-AT), | 100.0 | |
| COG0069 | 485 | GltB Glutamate synthase domain 2 [Amino acid trans | 100.0 | |
| PF04898 | 287 | Glu_syn_central: Glutamate synthase central domain | 100.0 | |
| COG0067 | 371 | GltB Glutamate synthase domain 1 [Amino acid trans | 100.0 | |
| PF00310 | 361 | GATase_2: Glutamine amidotransferases class-II; In | 100.0 | |
| PF01645 | 368 | Glu_synthase: Conserved region in glutamate syntha | 100.0 | |
| COG0070 | 301 | GltB Glutamate synthase domain 3 [Amino acid trans | 100.0 | |
| cd00982 | 251 | gltB_C gltb_C. This domain is found at the C-termi | 100.0 | |
| cd02808 | 392 | GltS_FMN Glutamate synthase (GltS) FMN-binding dom | 100.0 | |
| cd00981 | 232 | arch_gltB Archaeal-type gltB domain. This domain s | 100.0 | |
| cd01907 | 249 | GlxB Glutamine amidotransferases class-II (Gn-AT)_ | 100.0 | |
| PF01493 | 202 | GXGXG: GXGXG motif; InterPro: IPR002489 Glutamate | 100.0 | |
| cd00504 | 149 | GXGXG GXGXG domain. This domain of unknown functio | 99.97 | |
| KOG0538 | 363 | consensus Glycolate oxidase [Energy production and | 99.96 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 99.96 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 99.95 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 99.95 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 99.95 | |
| COG0034 | 470 | PurF Glutamine phosphoribosylpyrophosphate amidotr | 99.95 | |
| TIGR03122 | 260 | one_C_dehyd_C formylmethanofuran dehydrogenase sub | 99.95 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 99.95 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 99.95 | |
| PF01070 | 356 | FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR | 99.94 | |
| PRK07349 | 500 | amidophosphoribosyltransferase; Provisional | 99.94 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 99.94 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 99.94 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 99.94 | |
| PRK07847 | 510 | amidophosphoribosyltransferase; Provisional | 99.94 | |
| PRK07272 | 484 | amidophosphoribosyltransferase; Provisional | 99.94 | |
| cd00980 | 203 | FwdC/FmdC FwdC/FmdC. This domain of unknown functi | 99.94 | |
| PRK06388 | 474 | amidophosphoribosyltransferase; Provisional | 99.94 | |
| PLN02979 | 366 | glycolate oxidase | 99.94 | |
| PRK07631 | 475 | amidophosphoribosyltransferase; Provisional | 99.93 | |
| PLN02535 | 364 | glycolate oxidase | 99.93 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 99.93 | |
| PRK06781 | 471 | amidophosphoribosyltransferase; Provisional | 99.93 | |
| PRK09246 | 501 | amidophosphoribosyltransferase; Provisional | 99.93 | |
| PRK09123 | 479 | amidophosphoribosyltransferase; Provisional | 99.92 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 99.92 | |
| KOG0572 | 474 | consensus Glutamine phosphoribosylpyrophosphate am | 99.92 | |
| COG1304 | 360 | idi Isopentenyl diphosphate isomerase (BS_ypgA, MT | 99.92 | |
| PLN02440 | 479 | amidophosphoribosyltransferase | 99.92 | |
| PRK08341 | 442 | amidophosphoribosyltransferase; Provisional | 99.91 | |
| PRK05793 | 469 | amidophosphoribosyltransferase; Provisional | 99.91 | |
| TIGR01134 | 442 | purF amidophosphoribosyltransferase. Alternate nam | 99.91 | |
| PRK08525 | 445 | amidophosphoribosyltransferase; Provisional | 99.91 | |
| cd00715 | 252 | GPATase_N Glutamine amidotransferases class-II (GN | 99.87 | |
| cd00980 | 203 | FwdC/FmdC FwdC/FmdC. This domain of unknown functi | 99.86 | |
| cd00714 | 215 | GFAT Glutamine amidotransferases class-II (Gn-AT)_ | 99.85 | |
| PTZ00295 | 640 | glucosamine-fructose-6-phosphate aminotransferase; | 99.85 | |
| cd00352 | 220 | Gn_AT_II Glutamine amidotransferases class-II (GAT | 99.83 | |
| TIGR01135 | 607 | glmS glucosamine--fructose-6-phosphate aminotransf | 99.82 | |
| PLN02981 | 680 | glucosamine:fructose-6-phosphate aminotransferase | 99.82 | |
| PRK00331 | 604 | glucosamine--fructose-6-phosphate aminotransferase | 99.81 | |
| COG2218 | 264 | FwdC Formylmethanofuran dehydrogenase subunit C [E | 99.79 | |
| TIGR03122 | 260 | one_C_dehyd_C formylmethanofuran dehydrogenase sub | 99.78 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 99.76 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 99.76 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 99.73 | |
| cd00981 | 232 | arch_gltB Archaeal-type gltB domain. This domain s | 99.73 | |
| PTZ00394 | 670 | glucosamine-fructose-6-phosphate aminotransferase; | 99.72 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 99.72 | |
| cd01908 | 257 | YafJ Glutamine amidotransferases class-II (Gn-AT)_ | 99.7 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 99.69 | |
| TIGR03442 | 251 | conserved hypothetical protein TIGR03442. Members | 99.69 | |
| COG2218 | 264 | FwdC Formylmethanofuran dehydrogenase subunit C [E | 99.68 | |
| PF13522 | 133 | GATase_6: Glutamine amidotransferase domain | 99.66 | |
| cd00504 | 149 | GXGXG GXGXG domain. This domain of unknown functio | 99.64 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 99.63 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 99.61 | |
| PF01493 | 202 | GXGXG: GXGXG motif; InterPro: IPR002489 Glutamate | 99.59 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 99.58 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 99.53 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 99.52 | |
| PF03060 | 330 | NMO: Nitronate monooxygenase; InterPro: IPR004136 | 99.48 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 99.48 | |
| cd00712 | 220 | AsnB Glutamine amidotransferases class-II (GATase) | 99.46 | |
| cd00982 | 251 | gltB_C gltb_C. This domain is found at the C-termi | 99.45 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 99.39 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 99.39 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 99.39 | |
| cd04743 | 320 | NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma | 99.38 | |
| PF13537 | 125 | GATase_7: Glutamine amidotransferase domain; PDB: | 99.36 | |
| COG0449 | 597 | GlmS Glucosamine 6-phosphate synthetase, contains | 99.35 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 99.35 | |
| COG2070 | 336 | Dioxygenases related to 2-nitropropane dioxygenase | 99.35 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 99.32 | |
| PLN02826 | 409 | dihydroorotate dehydrogenase | 99.31 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 99.31 | |
| cd04742 | 418 | NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom | 99.3 | |
| PRK11750 | 1485 | gltB glutamate synthase subunit alpha; Provisional | 99.3 | |
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide tran | 99.26 | |
| PLN02549 | 578 | asparagine synthase (glutamine-hydrolyzing) | 99.26 | |
| PTZ00077 | 586 | asparagine synthetase-like protein; Provisional | 99.24 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 99.24 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 99.2 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 99.18 | |
| TIGR02814 | 444 | pfaD_fam PfaD family protein. The protein PfaD is | 99.18 | |
| TIGR01536 | 467 | asn_synth_AEB asparagine synthase (glutamine-hydro | 99.17 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 99.16 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 99.15 | |
| PRK02506 | 310 | dihydroorotate dehydrogenase 1A; Reviewed | 99.15 | |
| PRK09431 | 554 | asnB asparagine synthetase B; Provisional | 99.14 | |
| cd03766 | 181 | Gn_AT_II_novel Gn_AT_II_novel. This asparagine syn | 99.13 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 99.12 | |
| TIGR03104 | 589 | trio_amidotrans asparagine synthase family amidotr | 99.11 | |
| TIGR03108 | 628 | eps_aminotran_1 exosortase 1 system-associated ami | 99.06 | |
| COG0367 | 542 | AsnB Asparagine synthase (glutamine-hydrolyzing) [ | 98.99 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 98.93 | |
| PF13230 | 271 | GATase_4: Glutamine amidotransferases class-II; PD | 98.93 | |
| COG0070 | 301 | GltB Glutamate synthase domain 3 [Amino acid trans | 98.93 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 98.9 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 98.89 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 98.75 | |
| cd01909 | 199 | betaLS_CarA_N Glutamine amidotransferases class-II | 98.75 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 98.74 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 98.7 | |
| KOG1268 | 670 | consensus Glucosamine 6-phosphate synthetases, con | 98.7 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 98.61 | |
| PF01180 | 295 | DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP | 98.51 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 98.5 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 98.48 | |
| KOG1436 | 398 | consensus Dihydroorotate dehydrogenase [Nucleotide | 98.45 | |
| KOG0571 | 543 | consensus Asparagine synthase (glutamine-hydrolyzi | 98.42 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 98.42 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 98.41 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 98.39 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 98.32 | |
| cd01910 | 224 | Wali7 This domain is present in Wali7, a protein o | 98.31 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 98.3 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 98.27 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 98.18 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 98.07 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 98.05 | |
| COG0069 | 485 | GltB Glutamate synthase domain 2 [Amino acid trans | 98.0 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 97.99 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 97.98 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 97.88 | |
| COG0121 | 252 | Predicted glutamine amidotransferase [General func | 97.88 | |
| PF14691 | 111 | Fer4_20: Dihydroprymidine dehydrogenase domain II, | 97.87 | |
| PF01645 | 368 | Glu_synthase: Conserved region in glutamate syntha | 97.76 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 97.72 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 97.7 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 97.68 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 97.67 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 97.66 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 97.6 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 97.56 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 97.55 | |
| PF04898 | 287 | Glu_syn_central: Glutamate synthase central domain | 97.53 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 97.52 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 97.36 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 97.29 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 97.18 | |
| PRK00507 | 221 | deoxyribose-phosphate aldolase; Provisional | 97.09 | |
| cd02808 | 392 | GltS_FMN Glutamate synthase (GltS) FMN-binding dom | 97.07 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 97.02 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 96.99 | |
| KOG2335 | 358 | consensus tRNA-dihydrouridine synthase [Translatio | 96.96 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 96.9 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 96.86 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 96.83 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 96.76 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 96.76 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 96.62 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 96.62 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 96.57 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 96.5 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 96.48 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 96.44 | |
| PF04481 | 242 | DUF561: Protein of unknown function (DUF561); Inte | 96.42 | |
| COG0274 | 228 | DeoC Deoxyribose-phosphate aldolase [Nucleotide tr | 96.39 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 96.38 | |
| COG1902 | 363 | NemA NADH:flavin oxidoreductases, Old Yellow Enzym | 96.35 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 96.34 | |
| PRK05848 | 273 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.26 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 96.25 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 96.18 | |
| PRK08385 | 278 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.16 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 96.12 | |
| PF05690 | 247 | ThiG: Thiazole biosynthesis protein ThiG; InterPro | 96.12 | |
| CHL00162 | 267 | thiG thiamin biosynthesis protein G; Validated | 96.11 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 96.01 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 95.99 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) | 95.92 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 95.9 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 95.89 | |
| PRK07695 | 201 | transcriptional regulator TenI; Provisional | 95.89 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 95.88 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 95.88 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 95.8 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 95.79 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 95.75 | |
| TIGR00126 | 211 | deoC deoxyribose-phosphate aldolase. Deoxyribose-p | 95.74 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 95.72 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 95.71 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 95.7 | |
| KOG1799 | 471 | consensus Dihydropyrimidine dehydrogenase [Nucleot | 95.69 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 95.69 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 95.68 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 95.65 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 95.5 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 95.26 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 95.15 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 95.08 | |
| PRK05283 | 257 | deoxyribose-phosphate aldolase; Provisional | 95.07 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 95.04 | |
| PLN02411 | 391 | 12-oxophytodienoate reductase | 94.98 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 94.97 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 94.91 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 94.9 | |
| PF00724 | 341 | Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox | 94.9 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 94.87 | |
| PRK10605 | 362 | N-ethylmaleimide reductase; Provisional | 94.8 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 94.72 | |
| PLN02591 | 250 | tryptophan synthase | 94.58 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 94.57 | |
| COG0067 | 371 | GltB Glutamate synthase domain 1 [Amino acid trans | 94.55 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 94.44 | |
| COG4981 | 717 | Enoyl reductase domain of yeast-type FAS1 [Lipid m | 94.26 | |
| PRK04302 | 223 | triosephosphate isomerase; Provisional | 94.26 | |
| PRK07028 | 430 | bifunctional hexulose-6-phosphate synthase/ribonuc | 94.18 | |
| PRK07428 | 288 | nicotinate-nucleotide pyrophosphorylase; Provision | 94.12 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 94.11 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 94.11 | |
| PF01729 | 169 | QRPTase_C: Quinolinate phosphoribosyl transferase, | 94.09 | |
| PRK07896 | 289 | nicotinate-nucleotide pyrophosphorylase; Provision | 94.02 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 93.96 | |
| cd01571 | 302 | NAPRTase_B Nicotinate phosphoribosyltransferase (N | 93.94 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 93.8 | |
| PRK11840 | 326 | bifunctional sulfur carrier protein/thiazole synth | 93.7 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 93.6 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 93.31 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 93.26 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 93.22 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 93.21 | |
| PLN02979 | 366 | glycolate oxidase | 93.13 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 93.11 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 92.99 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 92.82 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 92.8 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 92.78 | |
| PRK05742 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 92.71 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 92.7 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 92.68 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 92.67 | |
| PRK06096 | 284 | molybdenum transport protein ModD; Provisional | 92.58 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 92.48 | |
| PLN02535 | 364 | glycolate oxidase | 92.31 | |
| cd00564 | 196 | TMP_TenI Thiamine monophosphate synthase (TMP synt | 92.24 | |
| TIGR01334 | 277 | modD putative molybdenum utilization protein ModD. | 92.23 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 92.21 | |
| PRK09016 | 296 | quinolinate phosphoribosyltransferase; Validated | 92.12 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 92.11 | |
| PF01070 | 356 | FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR | 92.03 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 91.94 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 91.88 | |
| COG2022 | 262 | ThiG Uncharacterized enzyme of thiazole biosynthes | 91.84 | |
| cd01568 | 269 | QPRTase_NadC Quinolinate phosphoribosyl transferas | 91.81 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 91.67 | |
| cd01573 | 272 | modD_like ModD; Quinolinate phosphoribosyl transfe | 91.38 | |
| PF01791 | 236 | DeoC: DeoC/LacD family aldolase; InterPro: IPR0029 | 91.34 | |
| TIGR00078 | 265 | nadC nicotinate-nucleotide pyrophosphorylase. Syno | 91.17 | |
| PRK06543 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 91.07 | |
| cd01572 | 268 | QPRTase Quinolinate phosphoribosyl transferase (QA | 91.04 | |
| cd00429 | 211 | RPE Ribulose-5-phosphate 3-epimerase (RPE). This e | 90.76 | |
| PRK06559 | 290 | nicotinate-nucleotide pyrophosphorylase; Provision | 90.56 | |
| PRK07226 | 267 | fructose-bisphosphate aldolase; Provisional | 90.43 | |
| TIGR01949 | 258 | AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep | 90.25 | |
| PRK06106 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 90.24 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 90.23 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 90.17 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 90.07 | |
| cd00405 | 203 | PRAI Phosphoribosylanthranilate isomerase (PRAI) c | 90.06 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 90.05 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 90.01 | |
| PRK07188 | 352 | nicotinate phosphoribosyltransferase; Provisional | 89.84 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 89.72 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 89.56 | |
| COG0157 | 280 | NadC Nicotinate-nucleotide pyrophosphorylase [Coen | 89.3 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 89.2 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 89.05 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 89.05 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 89.01 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 88.97 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 88.94 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 88.87 | |
| PRK06978 | 294 | nicotinate-nucleotide pyrophosphorylase; Provision | 88.86 | |
| PRK08072 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 88.8 | |
| cd00956 | 211 | Transaldolase_FSA Transaldolase-like fructose-6-ph | 88.72 | |
| TIGR00640 | 132 | acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal | 88.62 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 88.4 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 88.23 | |
| TIGR00693 | 196 | thiE thiamine-phosphate pyrophosphorylase. This mo | 88.18 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 88.11 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 88.09 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 88.03 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 87.89 | |
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 87.88 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 87.77 | |
| PRK04169 | 232 | geranylgeranylglyceryl phosphate synthase-like pro | 87.42 | |
| cd02812 | 219 | PcrB_like PcrB_like proteins. One member of this f | 87.35 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 87.21 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 87.15 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 86.98 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 86.9 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 86.87 | |
| PF01884 | 230 | PcrB: PcrB family; InterPro: IPR008205 This entry | 86.76 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 86.6 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 86.42 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 86.34 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 86.33 | |
| PRK08662 | 343 | nicotinate phosphoribosyltransferase; Reviewed | 86.27 | |
| PTZ00170 | 228 | D-ribulose-5-phosphate 3-epimerase; Provisional | 86.13 | |
| PRK09722 | 229 | allulose-6-phosphate 3-epimerase; Provisional | 85.86 | |
| PLN02716 | 308 | nicotinate-nucleotide diphosphorylase (carboxylati | 85.63 | |
| TIGR00875 | 213 | fsa_talC_mipB fructose-6-phosphate aldolase, TalC/ | 85.52 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 85.25 | |
| COG0134 | 254 | TrpC Indole-3-glycerol phosphate synthase [Amino a | 85.22 | |
| PRK08227 | 264 | autoinducer 2 aldolase; Validated | 85.05 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 84.97 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 84.87 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 84.55 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 84.31 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 84.16 | |
| cd02072 | 128 | Glm_B12_BD B12 binding domain of glutamate mutase | 83.9 | |
| PRK02615 | 347 | thiamine-phosphate pyrophosphorylase; Provisional | 83.81 | |
| COG0214 | 296 | SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta | 83.63 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 83.49 | |
| PRK13307 | 391 | bifunctional formaldehyde-activating enzyme/3-hexu | 83.31 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 83.13 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 82.92 | |
| TIGR00259 | 257 | thylakoid_BtpA membrane complex biogenesis protein | 82.58 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 82.43 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 82.01 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 81.52 | |
| PLN02460 | 338 | indole-3-glycerol-phosphate synthase | 81.36 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 81.16 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 80.99 | |
| PRK06512 | 221 | thiamine-phosphate pyrophosphorylase; Provisional | 80.81 | |
| PRK12653 | 220 | fructose-6-phosphate aldolase; Reviewed | 80.76 | |
| PRK01362 | 214 | putative translaldolase; Provisional | 80.48 | |
| cd00516 | 281 | PRTase_typeII Phosphoribosyltransferase (PRTase) t | 80.27 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 80.09 |
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=4212.32 Aligned_cols=1653 Identities=64% Similarity=1.036 Sum_probs=1557.2
Q ss_pred ccccccCCCccccccccCCCCCCCchhhhhhhhccCCCCCCCCCCCCCCCCCCceEEEEEEeCCCCchHhHHHHHHHHhc
Q 000266 62 GNQLRLAGSERVHLWRSDGPGKSPKLRVVVRSALSGVPEKPLGLYDPKFDKDSCGVGFVAELSGESSRKTITDALEMLVR 141 (1760)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gly~p~~E~DaCGVGfia~~~g~~sh~iv~~al~~L~~ 141 (1760)
++.+|-.+....+.+..+..+++ ||.+..|+ ++|||||.+|||||||||||+++|+.||+||.||+.||+|
T Consensus 35 ~t~~~~~~s~~~~~~~~~~~g~~--------S~~~~~p~-~~~L~dp~~ErdaCGVGFvanl~g~~shkivtDA~~~L~~ 105 (2142)
T KOG0399|consen 35 GTSLRRSHSLTAQIYTDEQHGRK--------SWASAAPQ-KAGLYDPQYERDACGVGFVANLKGETSHKIVTDARIMLGR 105 (2142)
T ss_pred ccccccCCceeeeeccccccCCc--------ChhhhCch-hccccCccccccCccceeEEecCCccccchHHHHHHHHHh
Confidence 66666666666666655444443 59999998 8999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCcceeecccChHHHHHHHH-hcCCCCCCCCcceEEeEecCCCHHHHHHHHHHHHHHHHHcCCEEEE
Q 000266 142 MAHRGACGCETNTGDGAGILVALPHDFFKEAAK-NVGFQLPPPGEYAVGMFFLPQSENRREESKKVFTKVAESLGHTVLG 220 (1760)
Q Consensus 142 M~HRGa~~~d~~tGDGAGil~~iP~~ff~~~~~-~~g~~lp~~g~YavG~~Flp~d~~~~~~~~~~ie~~~~~~gl~vlg 220 (1760)
|+||||||||+++|||||||+.|||+||++.++ +.|++||+.|+|||||||+|.++..+++++++|+++++++|+.||+
T Consensus 106 MtHRGacg~Dn~sGDGaGilt~iP~df~~~~~k~q~g~~lp~~g~yavGm~Flp~~d~~rkeak~vf~~~ae~~gl~VLg 185 (2142)
T KOG0399|consen 106 MTHRGACGCDNDSGDGAGILTGIPHDFYNKEAKEQLGLDLPDLGHYAVGMFFLPAEDNKRKEAKKVFTDLAEKLGLSVLG 185 (2142)
T ss_pred hhccCccCCCCCCCCccceeecCCHHHHHHHHhhccCCCCcccCcceEEEEEcchhHhHHHHHHHHHHHHHHHcCceEEE
Confidence 999999999999999999999999999998655 5699999999999999999999888999999999999999999999
Q ss_pred EEecCCCCCCCCCccccCCCeEEEEEEcC------CCCChhhHHHHHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCC
Q 000266 221 WRAVPTDNSGLGNSALQTEPVVEQVFLTP------SLRSKVDFENQMYILRRVSMAAIRESLNLEHGGAKDFYICSLSSR 294 (1760)
Q Consensus 221 wR~VPvd~~~lG~~a~~~~P~I~Q~fv~~------~~~~~~~fer~Ly~lRk~~e~~i~~~~~~~~~~~~~~yI~SlS~~ 294 (1760)
||+||||+++||+.|+++||.|.|+|+.| .+++.+.|||+||++||++ ++.+.. ..+|||||||+.
T Consensus 186 WR~Vp~d~silG~~A~~teP~i~Qv~l~p~~~~~~ae~~~~~fer~ly~lRk~~----~~~i~~----~~e~YvcSLsn~ 257 (2142)
T KOG0399|consen 186 WRKVPVDNSILGENALSTEPTILQVFLFPTYDAIYAEFDTDKFERSLYLLRKQA----SLQIGK----EKEFYVCSLSNQ 257 (2142)
T ss_pred eeccCCcccccChhhhhcCCchhhhccccchhcccccccHHHHHHHHHHHHHHH----HHhhhh----cceEEEEeccCc
Confidence 99999999999999999999999997754 2356789999999999999 554433 368999999999
Q ss_pred eEEEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCceeeeccccccChhhHHHHHHHhhcccccc
Q 000266 295 TVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRILGHNGEINTLRGNVNWMKAREGLLKCK 374 (1760)
Q Consensus 295 tivyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr~laHNGEInt~~gN~n~m~aRe~~~~s~ 374 (1760)
|||||||+.|.||++||+ ||++++|+|++||+|+||||||||+|++|||+|+++|||||||++||+|||++||++|+|.
T Consensus 258 TIVYKGql~~~ql~~yY~-DL~N~~y~S~~AlvHsRFSTNTfPsWdrAQPmR~l~HNGEINTlrGN~NwMraREg~mks~ 336 (2142)
T KOG0399|consen 258 TIVYKGQLRPEQLYNYYP-DLTNAEYKSHFALVHSRFSTNTFPSWDRAQPMRFLAHNGEINTLRGNKNWMRAREGVMKSA 336 (2142)
T ss_pred eEEEecccCHHHHhhhcc-cccchhhcccceeeeeccccCCCCCccccccchhhhccCceeeeccchhHHHHHHHhhhcc
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcC-CCHHHHHHHcCccccccCCCCCHHHHHHHHHHHhccCCCCCC
Q 000266 375 ELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAG-RSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGP 453 (1760)
Q Consensus 375 ~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g-~sl~eAi~~~iPeaw~~~~~m~~e~rafYey~s~lmepwdGP 453 (1760)
.|+ +++.++.||+++++|||++||+++|+|+++| +||+||+|||+||||+|+++|+||+++||+|++|.|||||||
T Consensus 337 ~~~---~e~~kl~Pive~~~SDSa~lDnv~ElLvrsG~rslpEAvM~mVPEA~~nd~~~~~e~k~fYd~~a~~MEpWDGP 413 (2142)
T KOG0399|consen 337 VFK---DELNKLLPIVEEGGSDSAALDNVLELLVRSGGRSLPEAVMMMVPEAWQNDKNMDPEKKAFYDWAACQMEPWDGP 413 (2142)
T ss_pred hhh---hhhhhhcccccCCCCchhhhhHHHHHHHHhCCCCcHHHHHHhChHHHhcCCCCCHHHHHHHHHHhhcCCCCCCc
Confidence 998 7999999999999999999999999999998 899999999999999999999999999999999999999999
Q ss_pred cEEEecCCceEEEccCCCCCCCceEEEEeCCEEEEEeccccccCCCCcEEEccccCCCcEEEEEcCCCEEechHHHHHHH
Q 000266 454 ALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVDFEKRIVVDDEALKQQY 533 (1760)
Q Consensus 454 a~iv~tdG~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~galdi~~~~vv~kgrl~PGeml~vd~~~g~i~~~~eik~~~ 533 (1760)
|++.|+||+++||++|||||||+|||.|.|+++|+|||+|++++++++|++||||.||.|++||++.|+|++|+|+|.+|
T Consensus 414 ALl~FsDGry~GA~LDRNGLRP~Ryy~Tsdd~v~~ASEVGvv~i~~~kVv~KgRL~PG~MllVD~~~g~v~dd~elK~ri 493 (2142)
T KOG0399|consen 414 ALLTFSDGRYCGAILDRNGLRPARYYITSDDRVICASEVGVVPIPPEKVVQKGRLKPGMMLLVDTELGQVVDDKELKKRI 493 (2142)
T ss_pred eEEEecCCceeeeeeccCCCcceeeEEecCCEEEEeecccccCCCHHHhhhccCcCCCeEEEEEccCCeEEecHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcHHHHhhcccccccchhccccccCCCCCccCcCCCCCCCCcccccccccchHHHHHcCCCHHHHHHhHHHHHhcc
Q 000266 534 SLARPYGEWLQRQKIELKNIVESIHKSERVSPGIAGVLPASNDDDNMENMGIHGLLAPLKAFGYTVEALEMLMLPMAKDG 613 (1760)
Q Consensus 534 a~~~py~~wl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~fgyt~E~~~~~l~pma~~g 613 (1760)
++++||++||+++.+.+..+.+...+...+...+. ..+.....+ ..+.|||||.|+++|+|.|||.+|
T Consensus 494 s~~~py~~wl~~~~~~l~~~~~~~~~s~~~~~s~~--~~e~~~~~d----------~~l~afgYt~E~v~mll~pMa~~g 561 (2142)
T KOG0399|consen 494 SSRRPYGSWLSENIILLKPIKDSVLSSTAVENSYL--VLETLRSQD----------DVLLAFGYTSEQVQMLLEPMAKQG 561 (2142)
T ss_pred hhcCcHHHHHHHhhhhhhhhhhhhhcccccccccc--cchhhhccc----------hhHHhccCcHHHHHHHHHHHHhcC
Confidence 99999999999988777655433221100000000 000000011 336799999999999999999999
Q ss_pred cccccccCCCCCccccccCccchhHHHhhhcccccCCCCCcccccceeeeeeeecCCCCCCCCCcCccceEEecCCccCH
Q 000266 614 TEALGSMGNDAPLAVMSNREKLTFEYFKQMFAQVTNPPIDPIREKIVTSMECMIGPEGVLTETTEEQCHRLSLKGPLLSI 693 (1760)
Q Consensus 614 ~E~igSMG~D~plA~ls~~~~~l~~yFkQ~FAQVTNPPID~iRE~~vmSl~~~~G~~~n~l~~~~~~~~~l~l~sPiL~~ 693 (1760)
|||+||||||+||||||++|++|||||||+||||||||||||||.+||||+|+|||++||||++++||+||.|++|||+.
T Consensus 562 kEalgsMGnDaplA~LS~~p~llydYFkQlFAQVTNPpIDPiRE~iVmSLec~IGp~gNllE~~~eq~~rl~L~~PvL~~ 641 (2142)
T KOG0399|consen 562 KEALGSMGNDAPLACLSDRPHLLYDYFKQLFAQVTNPPIDPIREAIVMSLECYIGPEGNLLEPGPEQCSRLILKGPVLNE 641 (2142)
T ss_pred CccccccCCCcceehhcCCccHHHHHHHHHHHhccCCCCChhhhhheEEEEeeecCCcCcccCChhHhceeeccCCcCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCeeEEEEEEeeCCCChhhHHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCccccHHHHHHHHHHH
Q 000266 694 EEMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRVAVSSLLAVGAVHHH 773 (1760)
Q Consensus 694 ~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~l~~al~~l~~~a~~av~~G~~iliLsDr~~~~~~~~ip~lLav~avh~~ 773 (1760)
+||++|++..+++|+++.|||||++++|.+||.++|++||++|.+||++|++|||||||+.+++|+||||||||||||||
T Consensus 642 ~e~ealk~~~y~~wk~k~iditf~~~~Gv~Gl~~~ld~ic~~A~eAv~~G~qiLVLSDR~~~~eRv~i~sllAvgaVHhh 721 (2142)
T KOG0399|consen 642 EEMEALKNDMYPGWKVKEIDITFDKSEGVKGLVKTLDRICEEADEAVRDGYQILVLSDRNDSAERVPIPSLLAVGAVHHH 721 (2142)
T ss_pred HHHHHHhcCCCccceeeeeeeeeehhhhhhhHHHHHHHHHHHHHHHHhccceEEEEecccCCcccCChHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCceeEEEeeCCCCcHHHHHHHHhcCcccccHHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 000266 774 LVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAICPYLATEAIWRLQVDGKIPPKASGEFHSKDELVKKYFKASNYGM 853 (1760)
Q Consensus 774 Li~~~~R~~~~lvvesge~re~Hh~a~L~GyGA~av~Pyla~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~a~~~Gl 853 (1760)
||+++||++|+|||||||+|+||||||||||||||||||||+||+.+|.++|++++.++.+.++.+|+++||+||++.||
T Consensus 722 LIqn~lR~~valV~et~e~revHhfc~LlGyGadaicPyLa~Et~~RL~~~~~~~~~nn~~t~t~eq~~knY~kavn~Gi 801 (2142)
T KOG0399|consen 722 LIQNKLRMQVALVVETGEAREVHHFCVLLGYGADAICPYLAMETLWRLSNKGLLDPRNNGPTVTEEQAQKNYRKAVNAGI 801 (2142)
T ss_pred HHHhhhhceEEEEEecCcceeeeeeeeeeccCccccchHHHHHHHHHHHhccccccccCCCcccHHHHHHHHHHHhhhhH
Confidence 99999999999999999999999999999999999999999999999999999976655556889999999999999999
Q ss_pred HHHHHhhchhhhhcccccchhhhcCCCHHHHhhhcCCCCCCcCCCChHHHHHHHHHHHHHhCCCCCCCCCCccCcCCCCC
Q 000266 854 MKVLAKMGISTLASYKGAQIFEALGLSSEVIEKCFAGTPSRVDGATFEVLASDALHLHELAFPTRILPPGSAEAVALPNP 933 (1760)
Q Consensus 854 lKvmsKMGIstl~SY~gaqiFeavGl~~~vv~~~F~gt~sri~G~~~~~i~~e~~~~h~~a~~~~~~~~~~~~~~~l~~~ 933 (1760)
||||||||||||+|||||||||++||++||||+||+||+|||+|+|||+||+|++.+|++|||++...+ ....|++.
T Consensus 802 lKVmsKMGIStl~SYkgAQIFE~lGL~neVVd~cF~gt~Sri~G~Tfe~LA~dal~~h~rafpt~~~~~---~s~~L~n~ 878 (2142)
T KOG0399|consen 802 LKVMSKMGISTLASYKGAQIFEALGLDNEVVDKCFTGTVSRIGGATFEELARDALSLHERAFPTDQTAR---FSKTLPNS 878 (2142)
T ss_pred HHHHHHhChHHHhhccchhhhhhhccchHHHHHHhcCChhhhccccHHHHHHHHHHHHHhcCCCccccc---ccccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999875421 14569999
Q ss_pred CceeeccCCCccccCHHHHHHHHHHHhcCCHHHHHHHHHHHhhcccCcccccccccc-cCCCCCCCCCCCCccccccceE
Q 000266 934 GDYHWRKGGEIHLNDPLAIAKLQEAARGNSVAAYKEYSKRIQELNKTCNLRGLLKFK-EADVKIPLEEVEPASEIVKRFC 1012 (1760)
Q Consensus 934 G~y~~r~~ge~H~~~P~~i~~lq~a~r~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~-~~~~~i~~~eVe~~t~i~~Pf~ 1012 (1760)
|+||||++||+|.|+|.+|++||+|||+++..+|+.|++..++..+.|+||+||+|+ +.+.+||+++|||+++|+++|+
T Consensus 879 G~~h~R~gGe~H~N~P~aia~Lq~AvR~kne~ay~~Ys~~~~~~~r~~tlRglLefk~s~~~~IPl~~VEPaseIv~RFc 958 (2142)
T KOG0399|consen 879 GFYHFRDGGEKHVNEPLAIAKLQDAVRNKNEAAYAEYSKQHNEARRWCTLRGLLEFKFSDSVPIPLEEVEPASEIVKRFC 958 (2142)
T ss_pred cceEecCCccccCCCHHHHHHHHHHHHhcchhHHHHHHHHHHhhCccchhhhhheeccccCCcCchhhcCcHHHHHHHHh
Confidence 999999999999999999999999999999999999999999888999999999998 6789999999999999999999
Q ss_pred ecCCCcccCcHHHHHHHHHHHHHcCCceeccCCCCCccccCcCCCCCCchhhhheeecccCCcCCChhhhcCchhHHHhh
Q 000266 1013 TGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKM 1092 (1760)
Q Consensus 1013 i~aMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGge~~e~~~~~~~g~~~~~~s~IkQvasgrFGVt~~~L~~a~~iqIKi 1092 (1760)
++|||||++|.|+|.+||+|||++|++||||||||+|+|..+..++. ++++|+|||+||+|||||+.||.|||+|||||
T Consensus 959 TGaMS~GsIS~EtH~tlAIAMNRlGgKSNtGEGGEdp~R~~~l~d~~-d~~rSAIKQVASgRFGVTs~yL~nADeLqIKm 1037 (2142)
T KOG0399|consen 959 TGAMSYGSISMETHTTLAIAMNRLGGKSNTGEGGEDPERSKPLADGV-DTMRSAIKQVASGRFGVTSYYLSNADELQIKM 1037 (2142)
T ss_pred cccccccccchhhHHHHHHHHHhhcCcCCCCCCCCChhhcccccccc-hHHHHHHHHHhccccccchhhccCchhhhhHH
Confidence 99999999999999999999999999999999999999999887763 67899999999999999999999999999999
Q ss_pred hccCCCCCCCCCCCccchHHHHHHhCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHH
Q 000266 1093 AQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASG 1172 (1760)
Q Consensus 1093 aQGAKpGeGG~Lpg~KV~~~IA~~R~~~pG~~lisP~~hhDiySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~ 1172 (1760)
+|||||||||+|||+||+..||++||++||+.||||||||||||||||+|+|++||++||+++|+||||+++|||++|.+
T Consensus 1038 AQGAKPGEGGeLPghKVs~dIA~tR~St~gVgLISPPPHHDIYSIEDLaQLIyDLk~aNP~ArVSVKLVSEaGVGiVASG 1117 (2142)
T KOG0399|consen 1038 AQGAKPGEGGELPGHKVSADIAKTRHSTAGVGLISPPPHHDIYSIEDLAQLIYDLKCANPRARVSVKLVSEAGVGIVASG 1117 (2142)
T ss_pred hcCCCCCCCCCCCcchhhHHHHHhccCCCCCCcCCCCCccccccHHHHHHHHHHhhccCCCceeEEEEEecccceeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCcccc
Q 000266 1173 VVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGF 1252 (1760)
Q Consensus 1173 aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~ 1252 (1760)
++|+.||+|.||||+||||+|+|++|||+|+||+++|+|+||+|..|+||.||.|++|||||||+||+.|.+||||++||
T Consensus 1118 VaK~~ADhI~vSGhDGGTGAS~wt~IK~AGlPWELGlAEThQtLv~NdLR~rvVlqtDGqlrtG~DV~iAallGAeefgf 1197 (2142)
T KOG0399|consen 1118 VAKGNADHILVSGHDGGTGASRWTGIKHAGLPWELGLAETHQTLVLNDLRGRVVLQTDGQLRTGRDVAIAALLGAEEFGF 1197 (2142)
T ss_pred cccccCceEEEeccCCCcCcccccccccCCCChhhcchhhhhHHhhccccccEEEEecCccccchHHHHHHHhCchhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHhccccccccccCCCCCcccccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCceeeccc
Q 000266 1253 STAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVDK 1332 (1760)
Q Consensus 1253 GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~dLl~~~~ 1332 (1760)
+|++|+++||+|||+||+|+||||||||||+||+||+|.||+|+|||..+++|+|.+|++||+++++|+|||+|+|..++
T Consensus 1198 ~T~plIalGCiMmRkCH~NtCpVGiAtQdp~LRakF~G~PehvVNff~yvaEEvR~imakLGfrtldemvGrtdlLk~~~ 1277 (2142)
T KOG0399|consen 1198 STAPLIALGCIMMRKCHLNTCPVGIATQDPELRAKFPGQPEHVVNFFFYVAEEVRGIMAKLGFRTLDEMVGRTDLLKARS 1277 (2142)
T ss_pred cccHHHHHhhHHHHHhccCCCCcccccCCHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHhCcchHHHHhcchhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccccchhhhcCCCCccccCcccCCCCCcccccccccCCCCchhHHHHHHHHHHHHHHcCCcEEEEecccccCcchhhhhh
Q 000266 1333 EVTKTNEKLENIDLSLLLRPAADLRPEAAQYCVQKQDHGLDMALDQKLIKLSKAALEKALPVYIETPVCNVNRAVGTMLS 1412 (1760)
Q Consensus 1333 ~~~~~~~~~~~ldls~~l~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~l~~~~~~~~~~~i~n~dR~vG~~Ls 1412 (1760)
++ +.|+.+||||+||+|+..++|+.+++++++|+|.++.+||++||++++.+++.+.++.++..|.|+||++|++||
T Consensus 1278 di---~~K~~~lDls~lL~~a~~i~P~~s~~~~kkq~h~l~~~LD~~li~e~ev~~~~~~~~~~~~~I~NvDRa~g~~ls 1354 (2142)
T KOG0399|consen 1278 DI---VVKATNLDLSPLLTPAGQIRPGASTKGVKKQDHELGTALDNKLIDEAEVTLEIGLPVFIEESIINVDRALGTRLS 1354 (2142)
T ss_pred cc---hhhheeechhhhcchhhhcCCCccccchhhhhhcccchhhhhhhhhhhhhhhccCceeeeeeEEecchhhhhhhh
Confidence 76 369999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCccEEEEEecCccchhhhcCCCCcEEEEEecCCchhhcCCCCceEEEeCCCCCCCCCCccccchhhh
Q 000266 1413 HEVTKRYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVA 1492 (1760)
Q Consensus 1413 ~~i~~~~g~~gl~~~~i~i~~~G~aGq~~Gaf~~~G~~i~v~G~A~DyvGkgmsGG~IvV~g~~~~~~~~~~~~i~Gn~~ 1492 (1760)
|+|+||||+.|||.++|+|+|.||||||||||+++|++|+++||||||||||||||+|+|+|++.+.|++++|+|+||+|
T Consensus 1355 ~~IsKryge~Gl~~~~i~i~~~GsAGQSfgaFLapGi~~~L~GdaNDYVGKglsGG~iVI~Ppk~s~fkpeEn~IiGNvc 1434 (2142)
T KOG0399|consen 1355 YEISKRYGETGLPKDTININFTGSAGQSFGAFLAPGITLRLEGDANDYVGKGLSGGKIVIYPPKASSFKPEENTIIGNVC 1434 (2142)
T ss_pred HHHHHHhcccCCCCceEEEEEEeccccccceeecCCcEEEEeccccchhcccccCCeEEEeCCccCCCCcccceEEccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCcccEEEEecccccccccccCCcEEEEcCCCccccccccCcEEEEeCCCCCcccCCCcceEEEEEcCCchhhcccCc
Q 000266 1493 LYGATSGEAYFNGMAAERFCVRNSGARAVVEGVGDHGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYVLDVDGKFRSRCNP 1572 (1760)
Q Consensus 1493 ~yGatgG~i~v~G~aGeR~gvr~sG~~iVV~G~Gd~~~eyMtgG~ivVlG~~G~~~gagM~gG~iyv~~~~~~~~~~~n~ 1572 (1760)
+||||||.+|++|.|||||+|||||+.+||||+|||+|||||||+|||||.+|+||++||+||++|++|.+++|..++|.
T Consensus 1435 lYGATsG~~f~~G~AgERFaVRNSgA~aVVEg~GDh~cEYMTGG~vVVLgk~grN~aAgmsGGiAY~ld~d~~f~~kiN~ 1514 (2142)
T KOG0399|consen 1435 LYGATSGDAFFRGVAGERFAVRNSGANAVVEGVGDHGCEYMTGGRVVVLGKTGRNFAAGMSGGIAYLLDEDDDFLGKINK 1514 (2142)
T ss_pred eecccccceEEeccccceeeeeccCceeeeeeccCccceeecCCEEEEEcccchhhhhcccCceEEEEccccchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeecCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhhhhhcCCCeEEEcccchHHHHHHHHHHHHHHHHHhhc---cc
Q 000266 1573 ELVDLDKVEEEEDIITLRMMIQQHQRYTNSQLAKEVLADFENLLPKFIKVFPRDYKRVLASMKVAAAQEAAEDAV---KD 1649 (1760)
Q Consensus 1573 ~~V~l~~~~~~~d~~~L~~ll~~h~~~t~s~~a~~iL~~w~~~~~~F~kv~P~~y~~~l~~~~~~~~~~~~~~~~---~~ 1649 (1760)
++|++++++++.|+.+||.||++|++||||.+|++||.||++++++||||+|++||++|+++++++.+++..+.. +.
T Consensus 1515 e~Vdl~~vt~~~~~~~lK~lIq~h~~~TgS~l~~~IL~~~~k~l~~fikv~P~dyk~vl~~~~~~~~k~~~~~~~~~~~~ 1594 (2142)
T KOG0399|consen 1515 ETVDLDSVTDPVDIAFLKSLIQEHVEYTGSQLAARILTNFEKYLPKFIKVFPRDYKRVLEAEKAERKKAKTGDKAQQSKA 1594 (2142)
T ss_pred hhcchhhccCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhCCchHhHHHHHhHHHHHhhccchhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999887776655532221 11
Q ss_pred CCCCC---chhhhhhhHHHHHHHhhhhccCcccccccccCCCCCCCcccccccCcccCccccccCCCCCCHHHHhcCchh
Q 000266 1650 AEEPD---EADFKEKDAFEELKKMAIASLNEKSNQEAEQVEPTKRPSRVADAVKHRGFIAYEREGVQYRDPNIRMNDWKE 1726 (1760)
Q Consensus 1650 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~gF~~~~R~~~~~r~~~~R~~Df~E 1726 (1760)
+...+ +..+.+++ ++.....+++..|.||.+.|+....|+.++++|.||||+|+|+...||+|.+|++||+|
T Consensus 1595 ~~~~~~~~~~~~~e~~-----kk~~~~~~~~~~~~ee~~~d~~~~~k~~~~ldk~rgf~~y~r~~~~yrdp~~r~ndw~e 1669 (2142)
T KOG0399|consen 1595 LLSVDETKPQTIEEHN-----KKQKTALDAAGFDNEEDLGDAAALEKKSEPLDKLRGFMKYNRRKEMYRDPKERLNDWKE 1669 (2142)
T ss_pred hcccCCCCcccccchh-----hhhhhhhhhhhcchhhhccchhhhhcCCcchhhhcchhhhhhccccccChhhhcccHHH
Confidence 11111 11111121 11222346788999999999999999999999999999999999999999999999999
Q ss_pred hccCCCChhHHHHHHhhhcCCCCCcccCCCCCCC
Q 000266 1727 VMEESKPGPLLKTQSARCMDCGTPFCHQVCIAPF 1760 (1760)
Q Consensus 1727 v~~~l~~~~~a~~QAaRCMdCG~PfC~~~~gCPl 1760 (1760)
++... ...++++|++||||||+||||+++||||
T Consensus 1670 ~~~~~-~~~~~~~qtarcmdcgtpfc~~~~gcpl 1702 (2142)
T KOG0399|consen 1670 VYDFE-AVSNLREQTARCMDCGTPFCQSDSGCPL 1702 (2142)
T ss_pred hhhhc-cchhhHHHhhHHhcCCCccccCCCCCcc
Confidence 99999 8899999999999999999999999997
|
|
| >PRK11750 gltB glutamate synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=3823.25 Aligned_cols=1473 Identities=46% Similarity=0.780 Sum_probs=1399.4
Q ss_pred CCCCCCCCCCCCCceEEEEEEeCCCCchHhHHHHHHHHhcccccCCCCCCCCCCCcceeecccChHHHHHHHHhcCCCCC
Q 000266 102 PLGLYDPKFDKDSCGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILVALPHDFFKEAAKNVGFQLP 181 (1760)
Q Consensus 102 ~~gly~p~~E~DaCGVGfia~~~g~~sh~iv~~al~~L~~M~HRGa~~~d~~tGDGAGil~~iP~~ff~~~~~~~g~~lp 181 (1760)
++|||||++|||||||||||+++|++||+||++||++|+||+||||||||++||||||||+||||+||++.+++.|++||
T Consensus 2 ~~glydp~~E~DaCGvGfiA~i~G~~Sh~iV~~al~aL~~m~HRGa~gaD~~tGDGAGIl~qIP~~ff~~~~~~~g~~lp 81 (1485)
T PRK11750 2 HMGLYDPSLERDNCGFGLIAHMEGEPSHKLVRTAIHALARMTHRGGIAADGKTGDGCGLLLQKPDRFFRAVAEEAGWRLA 81 (1485)
T ss_pred CCCCCCccccccCCcceEEEEcCCCccHHHHHHHHHHHHhccCcCcccCCCCCCCcceeeccCCHHHHHHHHHHcCCCCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999998888999998
Q ss_pred CCCcceEEeEecCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecCCCCCCCCCccccCCCeEEEEEEcCC-CCChhhHHHH
Q 000266 182 PPGEYAVGMFFLPQSENRREESKKVFTKVAESLGHTVLGWRAVPTDNSGLGNSALQTEPVVEQVFLTPS-LRSKVDFENQ 260 (1760)
Q Consensus 182 ~~g~YavG~~Flp~d~~~~~~~~~~ie~~~~~~gl~vlgwR~VPvd~~~lG~~a~~~~P~I~Q~fv~~~-~~~~~~fer~ 260 (1760)
+ +|||||||+|+|+..+++++++||++++++|++|++||+||||+++||+.|++++|.|||+||.++ ..+..+|||+
T Consensus 82 ~--~yaVgm~Flp~d~~~~~~~~~~~e~~~~~~gl~vlgwR~VPv~~~~LG~~A~~~~P~i~Q~fv~~~~~~~~~~fer~ 159 (1485)
T PRK11750 82 K--NYAVGMVFLNQDPELAAAARRILEEELQRETLSVVGWREVPTNPSVLGEIALSSLPRIEQVFVNAPAGWRERDFERR 159 (1485)
T ss_pred c--cceEEEEEcCCCHHHHHHHHHHHHHHHHHCCCEEEEEEcCCCCccccchhHhhCCCeEEEEEEccCCCCChhhHHHH
Confidence 6 899999999999999999999999999999999999999999999999999999999999999863 2344679999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCCeEEEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCC
Q 000266 261 MYILRRVSMAAIRESLNLEHGGAKDFYICSLSSRTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWD 340 (1760)
Q Consensus 261 Ly~lRk~~e~~i~~~~~~~~~~~~~~yI~SlS~~tivyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~ 340 (1760)
||++||++|+++ .. .++|||||||++|||||||++|+||.+||+ ||+|++|+|++||+|+||||||||||.
T Consensus 160 Ly~~R~~~e~~~----~~----~~~~Yi~SlS~rtiVYKGml~~~ql~~fY~-DL~d~~~~s~~al~HsRFSTNT~PsW~ 230 (1485)
T PRK11750 160 LFIARRRIEKRL----AD----DKDFYVCSLSNLVIIYKGLMMPADLPRFYL-DLADLRLESAICVFHQRFSTNTLPRWP 230 (1485)
T ss_pred HHHHHHHHHHhh----cc----CCCEEEEecCCCcceeEecccHHHHHHhhh-hhCCcceeEEEEEEECcCCCCCCCCCC
Confidence 999999995432 11 246999999999999999999999999999 999999999999999999999999999
Q ss_pred CCCCceeeeccccccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHH
Q 000266 341 RAQPMRILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMM 420 (1760)
Q Consensus 341 ~AQPfr~laHNGEInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~ 420 (1760)
+|||||+++|||||||+++|+|||++||..|+|+.|. +++++.||+.+++|||++|||+||+|+++|+||++|+||
T Consensus 231 ~AqPFR~laHNGEINTi~gN~nwm~are~~l~s~~~~----~~~~~~Pii~~~~SDSa~lDn~lElL~~~G~sl~~A~~m 306 (1485)
T PRK11750 231 LAQPFRYLAHNGEINTITGNRQWARARAYKFQTPLIP----DLQEAAPFVNETGSDSSSLDNMLELLLAGGMDLFRAMRL 306 (1485)
T ss_pred cCCCceeeeeccccccHHHHHHHHHHHHHhccCCCcc----hHHhhCCcCCCCCChHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999999999999999999999999999995 799999999999999999999999999999999999999
Q ss_pred cCccccccCCCCCHHHHHHHHHHHhccCCCCCCcEEEecCCceEEEccCCCCCCCceEEEEeCCEEEEEeccccccCCCC
Q 000266 421 MIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPE 500 (1760)
Q Consensus 421 ~iPeaw~~~~~m~~e~rafYey~s~lmepwdGPa~iv~tdG~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~galdi~~~ 500 (1760)
|+||+|++++.|+|++|+||+||+++||||||||+|+|+||+.++|+||||||||+||+.++|+.||+|||+|++|++++
T Consensus 307 liPeaW~~~~~m~~~~r~fYeY~s~lmEpwdGpaaiv~~~g~~i~A~~DrnGlRPlr~~~~~d~~~i~aSE~g~ldi~~~ 386 (1485)
T PRK11750 307 LVPPAWQNNPDMDPDLRAFYEFNSMHMEPWDGPAGIVMTDGRYAACNLDRNGLRPARYVITKDKLITLASEVGIWDYQPD 386 (1485)
T ss_pred hCCcccccCCCCCHHHHHHHHHHHhhcccCCCCEEEEEEeCCEEEEecCCCCCccceEEEEcCCEEEEEecceeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEccccCCCcEEEEEcCCCEEechHHHHHHHHhcCCcHHHHhhcccccccchhccccccCCCCCccCcCCCCCCCCcc
Q 000266 501 DVLRKGRLNPGMMLLVDFEKRIVVDDEALKQQYSLARPYGEWLQRQKIELKNIVESIHKSERVSPGIAGVLPASNDDDNM 580 (1760)
Q Consensus 501 ~vv~kgrl~PGeml~vd~~~g~i~~~~eik~~~a~~~py~~wl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (1760)
++++||+|+|||||+||+++|+|++|+|||+++++++||++||++++++|++++..... ... . .. .+
T Consensus 387 ~vvrkg~l~PGemi~id~~~g~i~~~~eik~~~a~~~py~~wl~~~~~~L~~~~~~~~~------~~~---~--~~-~~- 453 (1485)
T PRK11750 387 EVVEKGRVGPGELLVIDTRTGRILHSAEIDNDLKSRHPYKEWLEKNVRRLVPFEELPDE------QVG---S--RE-LD- 453 (1485)
T ss_pred eeEEecccCCCeEEEEeCCCCeEeccHHHHHHHHhcCCHHHHHHhhccccccccccccc------ccc---c--cC-CC-
Confidence 99999999999999999999999999999999999999999999999999975431100 000 0 00 01
Q ss_pred cccccccchHHHHHcCCCHHHHHHhHHHHHhcccccccccCCCCCccccccCccchhHHHhhhcccccCCCCCcccccce
Q 000266 581 ENMGIHGLLAPLKAFGYTVEALEMLMLPMAKDGTEALGSMGNDAPLAVMSNREKLTFEYFKQMFAQVTNPPIDPIREKIV 660 (1760)
Q Consensus 581 ~~~~~~~l~~~~~~fgyt~E~~~~~l~pma~~g~E~igSMG~D~plA~ls~~~~~l~~yFkQ~FAQVTNPPID~iRE~~v 660 (1760)
.++|.++|++||||.||++++|.|||++||||||||||||||||||++||+|||||||+||||||||||||||++|
T Consensus 454 ----~~~l~~~q~afGyt~E~~~~~l~pMa~~g~EpigSMG~D~plAvLS~~~~~l~~yFkQ~FAQVTNPPID~iRE~~v 529 (1485)
T PRK11750 454 ----DDTLKSYQKQFQYSFEELDQVIRVLAENGQEAVGSMGDDTPMAVLSSQPRSIYDYFRQQFAQVTNPPIDPLREAHV 529 (1485)
T ss_pred ----hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCcCcccCCCCcchhhhcCCCccHHHHhhhcceeccCCCCchhhhhce
Confidence 1568899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeecCCCCCCCCCcCccceEEecCCccCHHHHHHHHhccCCCCeeEEEEEEeeCCCChhhHHHHHHHHHHHHHHHH
Q 000266 661 TSMECMIGPEGVLTETTEEQCHRLSLKGPLLSIEEMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAI 740 (1760)
Q Consensus 661 mSl~~~~G~~~n~l~~~~~~~~~l~l~sPiL~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~l~~al~~l~~~a~~av 740 (1760)
|||+|+||+++|||++++++|++|+|+||||++.||++|+++....|++++||++|+. +.++|++||++||++|++||
T Consensus 530 mSl~~~lG~~~n~l~~~~~~~~~l~l~~PiL~~~~~~~l~~~~~~~~~~~~l~~~f~~--~~~~L~~aL~~L~~~A~~Av 607 (1485)
T PRK11750 530 MSLATCIGREMNVFCETEGHAHRVIFKSPVLSYSDFKQLTTLDEEHYRADTLDLNYDP--EETGLEAAIKRLCDEAEQAV 607 (1485)
T ss_pred eeeeeeeCCCcCcCCCCcccCCeEEeCCceeCHHHHHHHHhccccCCceEEEEEEEeC--ChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987678999999999986 44689999999999999999
Q ss_pred HcCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHHHcCCCCceeEEEeeCCCCcHHHHHHHHhcCcccccHHHHHHHHHH
Q 000266 741 KEGYTLLVLSDRAFSSKRVAVSSLLAVGAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAICPYLATEAIWR 820 (1760)
Q Consensus 741 ~~G~~iliLsDr~~~~~~~~ip~lLav~avh~~Li~~~~R~~~~lvvesge~re~Hh~a~L~GyGA~av~Pyla~e~~~~ 820 (1760)
++|++|||||||+++.+++|||+|||||||||||+++|+|++|||||||||+||+||||||||||||||||||||||+++
T Consensus 608 ~~G~~ilILSDr~~~~~~~~IP~LLAv~aVH~hLir~glR~~vsLIveSGe~RevHhfA~LiGyGA~AV~PYLA~eti~~ 687 (1485)
T PRK11750 608 RDGTVLLVLSDRNIAKGRLPIPAAMAVGAVQHRLVDKGLRCDANIIVETASARDPHHFAVLLGFGATAVYPYLAYETLGD 687 (1485)
T ss_pred HCCCeEEEEcCCCCCCCcCCcCHHHHHHHHHHHHHHcCCcceeeEEEecCCcCCHHHHHHHHhcChhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhhhcccccchhhhcCCCHHHHhhhcCCCCCCcCCCCh
Q 000266 821 LQVDGKIPPKASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEALGLSSEVIEKCFAGTPSRVDGATF 900 (1760)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~ny~~a~~~GllKvmsKMGIstl~SY~gaqiFeavGl~~~vv~~~F~gt~sri~G~~~ 900 (1760)
|+++|++ . .+.+++++||++|++|||+|||||||||||+||+||||||||||+++|||+||+||+|||+|++|
T Consensus 688 l~~~g~l-----~--~~~~~a~~ny~~A~~kGLlKImsKMGIStl~SY~gaqiFEaiGL~~~vv~~~F~gt~sri~Gi~~ 760 (1485)
T PRK11750 688 LVDTGEI-----L--KDYRQVMLNYRKGINKGLYKIMSKMGISTIASYRGSQLFEAVGLHDDVVDLCFKGVVSRIGGASF 760 (1485)
T ss_pred HHhcCCC-----C--CCHHHHHHHHHHHHHHHHHHHHhhcchhhHHhcCCcccccccCCCHHHHHHhcCCCCccCCCccH
Confidence 9999987 2 47899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCccCcCCCCCCceeeccCCCccccCHHHHHHHHHHHhcCCHHHHHHHHHHHhhcccC
Q 000266 901 EVLASDALHLHELAFPTRILPPGSAEAVALPNPGDYHWRKGGEIHLNDPLAIAKLQEAARGNSVAAYKEYSKRIQELNKT 980 (1760)
Q Consensus 901 ~~i~~e~~~~h~~a~~~~~~~~~~~~~~~l~~~G~y~~r~~ge~H~~~P~~i~~lq~a~r~~~~~~~~~~~~~~~~~~~~ 980 (1760)
++|++|++.||+.||+.. ..||.+|+||||++||+|.|+|++|+.||+|+|+++|+.|++|+...+++ ++
T Consensus 761 ~~i~~e~~~rh~~a~~~~---------~~L~~~g~~~~r~~ge~H~~~p~~i~~lq~a~~~g~~~~y~~y~~~~~~~-~~ 830 (1485)
T PRK11750 761 EDFEQDQKNLSKRAWLAR---------KPIDQGGLLKYVHGGEYHAYNPDVVNTLQKAVQSGDYSDYQEYAKLVNER-PV 830 (1485)
T ss_pred HHHHHHHHHHHHHhcCCc---------cCCCCCCeeeeccCCcccccCHHHHHHHHHHHHcCCHHHHHHHHHHhccC-CC
Confidence 999999999999999522 23999999999999999999999999999999999999999999999877 56
Q ss_pred cccccccccccCCCCCCCCCCCCccccccceEecCCCcccCcHHHHHHHHHHHHHcCCceeccCCCCCccccCcCCCCCC
Q 000266 981 CNLRGLLKFKEADVKIPLEEVEPASEIVKRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSM 1060 (1760)
Q Consensus 981 ~~~r~ll~~~~~~~~i~~~eVe~~t~i~~Pf~i~aMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGge~~e~~~~~~~g~~ 1060 (1760)
.+||+||.|+....++|+++|+|+++|.+||++++||||+||+|+|++||+||+++|+++||||||++|+++.
T Consensus 831 ~~lr~ll~~~~~~~~~p~~eve~v~~I~~rf~~~aMSfGalS~eA~~aLA~a~~~~G~~sntGEGG~~p~~~~------- 903 (1485)
T PRK11750 831 ATLRDLLALKPADNPIPLDEVEPAEELFKRFDSAAMSIGALSPEAHEALAIAMNRLGGRSNSGEGGEDPARYG------- 903 (1485)
T ss_pred CCHHHHhcccCCCCCCCccccccHHHHhcccccccCCCCccCHHHHHHHHHHHHHhCCceecCCCCCCHHHHh-------
Confidence 7999999998656789999999999999999999999999999999999999999999999999999999874
Q ss_pred chhhhheeecccCCcCCChhhhcCchhHHHhhhccCCCCCCCCCCCccchHHHHHHhCCCCcccccCCCCCCCCCCHHHH
Q 000266 1061 NPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHHDIYSIEDL 1140 (1760)
Q Consensus 1061 ~~~~s~IkQvasgrFGVt~~~L~~a~~iqIKiaQGAKpGeGG~Lpg~KV~~~IA~~R~~~pG~~lisP~~hhDiySiedL 1140 (1760)
+...+.|+|++|+|||||++||.++++||||++||||||+||+||++||+++||++|+++||+++|||||||||||||||
T Consensus 904 ~~~~~~i~QiaSGrFGv~~e~l~~a~~ieIKi~QGAKPG~GG~Lpg~KV~~~IA~~R~~~~G~~liSP~phhdiySieDL 983 (1485)
T PRK11750 904 TEKVSKIKQVASGRFGVTPAYLVNAEVLQIKVAQGAKPGEGGQLPGDKVNPLIARLRYSVPGVTLISPPPHHDIYSIEDL 983 (1485)
T ss_pred cccCCeEEEccCCcCCCCHHHhccCCEEEEEecCCCCCCCCCcCccccCCHHHHHHcCCCCCCCCCCCCCCccCCCHHHH
Confidence 12346899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCC
Q 000266 1141 AQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVAND 1220 (1760)
Q Consensus 1141 aqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~g 1220 (1760)
+|+|++||+.||++||+||++++.|++++|.+++|||||+|+|||++||||++|+++++|+|+||+.+|+++|++|+.+|
T Consensus 984 ~qlI~~Lk~~~~~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~~~g 1063 (1485)
T PRK11750 984 AQLIFDLKQVNPKALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALVANG 1063 (1485)
T ss_pred HHHHHHHHHhCCCCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHh-hcCCCHHHHHHHH
Q 000266 1221 LRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLRE-KFAGEPEHVINFF 1299 (1760)
Q Consensus 1221 lr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~-~~~g~~e~V~n~~ 1299 (1760)
+|++|.|++||||+||.||+||++||||+|+|||++|+|+||+|||+||+|+||+|||||||.||+ +|.+.+++|+|||
T Consensus 1064 lR~rv~l~a~Ggl~t~~Dv~kA~aLGAd~~~~gt~~lialGCi~~r~Ch~~~CPvGiaTqd~~lr~~~~~~~~~~v~nf~ 1143 (1485)
T PRK11750 1064 LRHKIRLQVDGGLKTGLDVIKAAILGAESFGFGTGPMVALGCKYLRICHLNNCATGVATQDEKLRKNHYHGLPEMVMNYF 1143 (1485)
T ss_pred CCcceEEEEcCCcCCHHHHHHHHHcCCcccccchHHHHHcCCHHHHhhcCCCCCcEEeccCHHHHhhhccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999997 6788899999999
Q ss_pred HHHHHHHHHHHHhcCCCChhhhcCCCceeecccccccchhhhcCCCCccccCcccCCCCCcccccccccCCCCchh-HHH
Q 000266 1300 FMLAEELREIMSQLGFRTITEMIGRSDMLEVDKEVTKTNEKLENIDLSLLLRPAADLRPEAAQYCVQKQDHGLDMA-LDQ 1378 (1760)
Q Consensus 1300 ~~l~~ELr~~Ma~lG~~si~ELigr~dLl~~~~~~~~~~~~~~~ldls~~l~~~~~~~~~~~~~~~~~~~~~~~~~-ld~ 1378 (1760)
..+.+||+++|+.||+++++|||||+|||.+.+.. .+ |++.||||+||.+++. .+....++...|+|.+++. ||+
T Consensus 1144 ~~~~~el~~~la~lG~~s~~elvGr~dlL~~~~~~--~~-k~~~lDls~lL~~~~~-~~~~~~~~~~~~~~~~~~~~ld~ 1219 (1485)
T PRK11750 1144 EFIAEETREWMAQLGVRSLEDLIGRTDLLEELEGE--TA-KQQKLDLSPLLETAEP-PAGKALYCTEERNPPFDKGLLNE 1219 (1485)
T ss_pred HHHHHHHHHHHHHhCCCCHHHhcCchhccccccCc--hh-hhcCCChhHHhCCCCC-CCCcccccccccccccccchhHH
Confidence 99999999999999999999999999999987654 34 9999999999988752 2333455666678998877 999
Q ss_pred HHHHHHHHHHHcCCcEEEEecccccCcchhhhhhHHHHHhhccCCCCCccEEEEEecCccchhhhcCCCCcEEEEEecCC
Q 000266 1379 KLIKLSKAALEKALPVYIETPVCNVNRAVGTMLSHEVTKRYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSN 1458 (1760)
Q Consensus 1379 ~~~~~~~~~l~~~~~~~~~~~i~n~dR~vG~~Ls~~i~~~~g~~gl~~~~i~i~~~G~aGq~~Gaf~~~G~~i~v~G~A~ 1458 (1760)
++|+.+.++|++++++.++++|.|+||++||+|||+|+|+||+.|||+++|+|+++|+|||||||||.+|++|+|+||||
T Consensus 1220 ~ll~~~~~ai~~~~~~~~~~~i~N~dR~vGt~ls~~i~~~yg~~gl~~~~i~i~~~G~aGqs~Gaf~~~G~~i~v~GdAn 1299 (1485)
T PRK11750 1220 QMLQQAKPAIEAKQGGEFWFDIRNTDRSVGARLSGEIARRHGNQGMADAPIKLRFTGTAGQSFGVWNAGGLELYLEGDAN 1299 (1485)
T ss_pred HHHHHHHHHHHcCCcEEEEEeEEeccccHHHHHHHHHHHHhCcCCCCCCeEEEEEEccCccccccccCCCCEEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhcCCCCceEEEeCCCCCCCCCCccccchhhhhccCcccEEEEecccccccccccCCcEEEEcCCCccccccccCcEE
Q 000266 1459 DYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCVRNSGARAVVEGVGDHGCEYMTGGTV 1538 (1760)
Q Consensus 1459 DyvGkgmsGG~IvV~g~~~~~~~~~~~~i~Gn~~~yGatgG~i~v~G~aGeR~gvr~sG~~iVV~G~Gd~~~eyMtgG~i 1538 (1760)
|||||||+||+|+|+|++++.|++.+|+|+||+|+||||||++||+|+||+|||+|||||++||+|+|||+|||||||+|
T Consensus 1300 dyvGkgmsGG~I~V~g~~~~~~~~~~~~i~Gn~~~yGatgG~i~i~G~AG~R~gvr~sG~~~VVeG~Gd~~~EyMtgG~v 1379 (1485)
T PRK11750 1300 DYVGKGMAGGKIVIRPPVGSAFRSHETAIIGNTCLYGATGGKLFAAGRAGERFAVRNSGAIAVVEGIGDHGCEYMTGGIV 1379 (1485)
T ss_pred ccccccccCCEEEEECCCccccccccccccccceeeccccCEEEEEcccccceeecCCCCeEEEeCCCcchhhhhcCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCcccCCCcceEEEEEcCCchhhcccCccceeeecCCCH-HHHHHHHHHHHHHHHHhCcHHHHHHHhhhhhcCC
Q 000266 1539 VVLGKTGRNFAAGMSGGIAYVLDVDGKFRSRCNPELVDLDKVEEE-EDIITLRMMIQQHQRYTNSQLAKEVLADFENLLP 1617 (1760)
Q Consensus 1539 vVlG~~G~~~gagM~gG~iyv~~~~~~~~~~~n~~~V~l~~~~~~-~d~~~L~~ll~~h~~~t~s~~a~~iL~~w~~~~~ 1617 (1760)
||||++|+|+|+||+||+|||+|++++|..+||.+||++++++++ ++.+.|+.||++|+++|||++|++||+||++++.
T Consensus 1380 vVlG~~G~~~gagM~gG~~yv~~~~~~~~~~~n~~~V~~~~~~~~~~~~~~l~~li~~h~~~T~S~~a~~iL~~w~~~~~ 1459 (1485)
T PRK11750 1380 CVLGKTGVNFGAGMTGGFAYVLDEDGDFVDRVNHELVEILRVEDLEIHREHLRGLITEHVEETGSEWGEEILANFDDYLR 1459 (1485)
T ss_pred EEeCCCCcchhcCCCCCEEEEECCccchhhhcCHhHeeecccccChHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHhC
Confidence 999999999999999999999999999999999999999887432 2334499999999999999999999999999999
Q ss_pred CeEEEccc--chHHHHHHHHH
Q 000266 1618 KFIKVFPR--DYKRVLASMKV 1636 (1760)
Q Consensus 1618 ~F~kv~P~--~y~~~l~~~~~ 1636 (1760)
+||||+|+ +|+++|+...+
T Consensus 1460 ~F~kv~P~~~~~~~~~~~~~~ 1480 (1485)
T PRK11750 1460 KFWLVKPKAADVKALLGHRSR 1480 (1485)
T ss_pred cEEEEcCCHHHHHHHHHhhhh
Confidence 99999999 89999876543
|
|
| >cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-121 Score=1080.47 Aligned_cols=412 Identities=59% Similarity=1.018 Sum_probs=395.4
Q ss_pred ceEEEEEEeCCCCchHhHHHHHHHHhcccccCCCCCCCCCCCcceeecccChHHHHHHHHhcCCCCCCCCcceEEeEecC
Q 000266 115 CGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILVALPHDFFKEAAKNVGFQLPPPGEYAVGMFFLP 194 (1760)
Q Consensus 115 CGVGfia~~~g~~sh~iv~~al~~L~~M~HRGa~~~d~~tGDGAGil~~iP~~ff~~~~~~~g~~lp~~g~YavG~~Flp 194 (1760)
|||||||+++|++||+||++||++|+||+||||||||++||||||||+||||+||++.+++.|++||+.|+|||||+|||
T Consensus 1 CGvG~va~~~g~~sh~iv~~al~~L~~m~HRGa~~ad~~tGDGaGil~~iP~~f~~~~~~~~g~~lp~~g~yavg~~Flp 80 (413)
T cd00713 1 CGVGFVANIDGKPSHDIVQDALEALERMEHRGGVGADGKTGDGAGILIQIPHEFFREELAEAGIELPEAGEYAVGMLFLP 80 (413)
T ss_pred CeEEEEEECCCCchHHHHHHHHHHHhhCcCCCcccCCCCCCCcceEeccCCHHHHHHHHHHcCCCCCCCCCeeEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEEecCCCCCCCCCccccCCCeEEEEEEcCCC-CChhhHHHHHHHHHHHHHHHHH
Q 000266 195 QSENRREESKKVFTKVAESLGHTVLGWRAVPTDNSGLGNSALQTEPVVEQVFLTPSL-RSKVDFENQMYILRRVSMAAIR 273 (1760)
Q Consensus 195 ~d~~~~~~~~~~ie~~~~~~gl~vlgwR~VPvd~~~lG~~a~~~~P~I~Q~fv~~~~-~~~~~fer~Ly~lRk~~e~~i~ 273 (1760)
+|+..+++++++|+++++++|++||+||+||||+++||+.|++++|.|||+||.++. .+..+|||+||++||++|++++
T Consensus 81 ~~~~~~~~~~~~~e~~~~~~g~~vlgwR~VPv~~~~lG~~a~~~~P~i~Q~fv~~~~~~~~~~~er~l~~~r~~~e~~~~ 160 (413)
T cd00713 81 RDEEAREAAKAIIEEELEAEGLRVLGWRDVPVDNSVLGPTARATEPLIEQVFVGAPSGDDGEAFERKLYLLRKRIEKAIR 160 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEEeCCCChhhcchhhhhcCCeEEEEEEecCCccCcchHHHHHHHHHHHHHHHHH
Confidence 999889999999999999999999999999999999999999999999999998643 3446799999999999966554
Q ss_pred HhhhhccCCCCcEEEEEecCCeEEEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCceeeecccc
Q 000266 274 ESLNLEHGGAKDFYICSLSSRTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRILGHNGE 353 (1760)
Q Consensus 274 ~~~~~~~~~~~~~yI~SlS~~tivyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr~laHNGE 353 (1760)
.. .++|||||||+++|||||||+|+||.+||+ ||++++|+|++||+|+||||||+|+|.+|||||+++||||
T Consensus 161 ~~-------~~~~yv~Sls~~~iVyKGm~~~~~v~~~Y~-DL~~~~~~s~~al~H~RfSTNT~p~W~~AqPfr~laHNGE 232 (413)
T cd00713 161 AA-------DEDFYVCSLSSRTIVYKGMLLPEQLGQFYP-DLQDPRFESAFALVHSRFSTNTFPSWPLAQPFRYLAHNGE 232 (413)
T ss_pred hc-------CCCEEEEecccceEEEeccccHHHHHHhcc-ccCcccceEEEEEEEEecCCCCCCCcccCCcceeEEEccc
Confidence 32 246999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred ccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCC
Q 000266 354 INTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMD 433 (1760)
Q Consensus 354 Int~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~ 433 (1760)
|||+++|+|||++||+.|+|+.|| +++++++||++.++||||+|||+||+|++.|+++++|+|||+||||++++.|+
T Consensus 233 InT~~gnr~~m~are~~~~s~~~g---~~~~~~~pi~~~~~SDS~~ld~~le~l~~~g~~l~~A~~mliPeaw~~~~~m~ 309 (413)
T cd00713 233 INTIRGNRNWMRAREGLLKSPLFG---EDLKKLKPIINPGGSDSASLDNVLELLVRSGRSLPEAMMMLIPEAWQNNPTMD 309 (413)
T ss_pred ccCHHHHHHHHHHhhhhhcCccch---hhHHhcCCcCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHhCChhhccCccCC
Confidence 999999999999999999999999 78999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCCcEEEecCCceEEEccCCCCCCCceEEEEeCCEEEEEeccccccCCCCcEEEccccCCCcE
Q 000266 434 PQRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMM 513 (1760)
Q Consensus 434 ~e~rafYey~s~lmepwdGPa~iv~tdG~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~galdi~~~~vv~kgrl~PGem 513 (1760)
+++|+||+||+++||||||||+++|+||+.++|+||||||||+||..++|+.|++|||+|++++.++.|++||+|+||||
T Consensus 310 ~~~r~fYey~~~~me~~dGp~aiv~~dg~~i~a~rDrnGlRPl~~~~t~d~~~v~ASE~gal~~~~~~V~~kg~l~PGe~ 389 (413)
T cd00713 310 PELRAFYEYHSSLMEPWDGPAAIAFTDGRQVGASLDRNGLRPARYVITKDGLLIMSSEVGVVDVPPEKVVEKGRLGPGEM 389 (413)
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEEEeCCEEEEEeCCCCCcceEEEEECCCEEEEEeCCcccCCCcceeeecCCCCCCeE
Confidence 99999999999999999999999999999999999999999998887888899999999999998888999999999999
Q ss_pred EEEEcCCCEEechHHHHHHHHhcC
Q 000266 514 LLVDFEKRIVVDDEALKQQYSLAR 537 (1760)
Q Consensus 514 l~vd~~~g~i~~~~eik~~~a~~~ 537 (1760)
|+||+++|+|++|+|||+++++++
T Consensus 390 v~id~~~g~i~~~~eik~~~a~~~ 413 (413)
T cd00713 390 LLVDLEEGRILDDEEIKDQLAKRH 413 (413)
T ss_pred EEEECCCCEEEccHHHHHHHHhcC
Confidence 999999999999999999999864
|
GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits. |
| >COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-120 Score=1079.30 Aligned_cols=478 Identities=59% Similarity=0.904 Sum_probs=462.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhchhhhhcccccchhhhcCCCHHHHhhhcCCCCCCcCCCChHHHHHHHHHHHHHhCC
Q 000266 837 SKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEALGLSSEVIEKCFAGTPSRVDGATFEVLASDALHLHELAFP 916 (1760)
Q Consensus 837 ~~~~~~~ny~~a~~~GllKvmsKMGIstl~SY~gaqiFeavGl~~~vv~~~F~gt~sri~G~~~~~i~~e~~~~h~~a~~ 916 (1760)
+.++++.||++++++|++||||||||||++||+|||+||++||+.++++.||+||++|++|++++++++|+..+|+.||.
T Consensus 2 ~~~~~~~~~~~~~~~~~~k~~skmgi~~~~sy~~a~~~~~~gl~~~~v~~~f~g~~~r~~~~~~~~~~~~~~~~~~~a~~ 81 (485)
T COG0069 2 SLEEALKNYIKAIEKGLLKIMSKMGISTLASYRGAQLFEAVGLSADVVDLYFPGTETRIGGISLDEIAQEISRRHRTAGA 81 (485)
T ss_pred CHHHHHHHHHHHHHhhhHHHHHHhhccchhhccCceeeccccCCcHHHheecCCCcccccccchHHHhHHHHHHHHhhcc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCCccCcCCCCCCceeeccCCCccccCHHHHHHHHHHHh-cCCHHHHHHHHHHHhhcccCcccccccccccCCC-
Q 000266 917 TRILPPGSAEAVALPNPGDYHWRKGGEIHLNDPLAIAKLQEAAR-GNSVAAYKEYSKRIQELNKTCNLRGLLKFKEADV- 994 (1760)
Q Consensus 917 ~~~~~~~~~~~~~l~~~G~y~~r~~ge~H~~~P~~i~~lq~a~r-~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~- 994 (1760)
.+. +.++..|+|+||+.||+|.|||+++..||.+++ .++|+.|++|+..++++. ..++|++++|+....
T Consensus 82 ~~~--------~~~~~~G~~~~r~~ge~h~~~p~~~~~~q~a~~~~~~~~~~~~~~~~i~~~~-~~~~r~~~d~~~~~~~ 152 (485)
T COG0069 82 VKA--------KELDVGGFGTERDGGEPHFYDPDTLFALQVATRSEGGYREYKEYSVLIGTRA-STTLRDLLDFIADGSK 152 (485)
T ss_pred ccc--------ccccccCcceecccCCCccCCHHHHhHhhhcccccCchHHHHHHHHHhhccc-chhhhhhhhhcccccc
Confidence 542 368899999999999999999999999999999 889999999999999876 556999999986554
Q ss_pred CCCCCCCCCccccccceEecCCCcccCcHHHHHHHHHHHHHcCCceeccCCCCCccccCcCCCCCCchhhhheeecccCC
Q 000266 995 KIPLEEVEPASEIVKRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRSAIKQVASGR 1074 (1760)
Q Consensus 995 ~i~~~eVe~~t~i~~Pf~i~aMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGge~~e~~~~~~~g~~~~~~s~IkQvasgr 1074 (1760)
++++++|+|..+|.+||.+++||||+||+|+|++||+|||++|+.+||||||++|+++. ..++.|+|++|+|
T Consensus 153 ~i~~~~vep~~~i~~~~~~~aMS~GAlS~eA~~alA~a~~~~G~~sntGEGGe~~~~~~--------~~~s~I~QvaSGR 224 (485)
T COG0069 153 PIPIEEVEPVLELKKRFVTGAMSFGALSKEAHEALARAMNRIGTKSNTGEGGEDPERYE--------DGRSAIKQVASGR 224 (485)
T ss_pred ccccccccccceeeecccccccCCccccHHHHHHHHHHHHHhcCcccCCCCCCCHHHhc--------cccceEEEecccc
Confidence 89999999999999999999999999999999999999999999999999999999983 2458999999999
Q ss_pred cCCChhhhcCchhHHHhhhccCCCCCCCCCCCccchHHHHHHhCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHhCCCC
Q 000266 1075 FGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGA 1154 (1760)
Q Consensus 1075 FGVt~~~L~~a~~iqIKiaQGAKpGeGG~Lpg~KV~~~IA~~R~~~pG~~lisP~~hhDiySiedLaqlI~~Lk~~~p~~ 1154 (1760)
||||++||.++++|||||+||||||+|||||++||+++||++|+++||+++|||||||||||||||+|+|++||++||.+
T Consensus 225 FGV~~~yL~~a~~ieIKiaQGAKPGeGG~Lpg~KV~~~IA~~R~~~pG~~~ISP~pHHDiysieDLaqlI~dLk~~~~~~ 304 (485)
T COG0069 225 FGVTPEYLANADAIEIKIAQGAKPGEGGQLPGEKVTPEIAKTRGSPPGVGLISPPPHHDIYSIEDLAQLIKDLKEANPWA 304 (485)
T ss_pred CccCHHHhCccceEEEEeccCCCCCCCCCCCCccCCHHHHHhcCCCCCCCCcCCCCcccccCHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcC
Q 000266 1155 RISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLK 1234 (1760)
Q Consensus 1155 pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIr 1234 (1760)
+|+||+++..|++++|.+++|++||+|+|||++||||++|+++++|+|+||+.+|+++||+|+.+|+|++|.|++||||+
T Consensus 305 ~I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~glRd~v~l~~~Ggl~ 384 (485)
T COG0069 305 KISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGLRDKVKLIADGGLR 384 (485)
T ss_pred eEEEEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCCcceeEEEecCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhh--cCCCHHHHHHHHHHHHHHHHHHHHh
Q 000266 1235 TGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREK--FAGEPEHVINFFFMLAEELREIMSQ 1312 (1760)
Q Consensus 1235 tG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~--~~g~~e~V~n~~~~l~~ELr~~Ma~ 1312 (1760)
||.||+||++||||+|+|||++|+++||+|||+||+|+||+|||||||+||++ |.+.+++|+|||.++++|++++|+.
T Consensus 385 Tg~DVaka~aLGAd~v~~gTa~lia~GCim~r~CH~~tCp~GIaTqdp~Lrkrl~~~~~~~~v~N~~~~~a~e~rella~ 464 (485)
T COG0069 385 TGADVAKAAALGADAVGFGTAALVALGCIMCRVCHTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFVAEELRELLAA 464 (485)
T ss_pred CHHHHHHHHHhCcchhhhchHHHHHhhhHhhhhccCCCCCceeeecCHHHHhhcCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 8899999999999999999999999
Q ss_pred cCCCChhhhcCCCceeecc
Q 000266 1313 LGFRTITEMIGRSDMLEVD 1331 (1760)
Q Consensus 1313 lG~~si~ELigr~dLl~~~ 1331 (1760)
+|+++++||+||.|+|...
T Consensus 465 lG~~~l~el~g~~d~L~~~ 483 (485)
T COG0069 465 LGKRSLSELIGRTDLLRTK 483 (485)
T ss_pred hCCCCHHHHhcchhhhhcc
Confidence 9999999999999998753
|
|
| >PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-106 Score=913.09 Aligned_cols=286 Identities=52% Similarity=0.869 Sum_probs=230.9
Q ss_pred HHHHHcCCCHHHHHHhHHHHHhcccccccccCCCCCccccccCccchhHHHhhhcccccCCCCCcccccceeeeeeeecC
Q 000266 590 APLKAFGYTVEALEMLMLPMAKDGTEALGSMGNDAPLAVMSNREKLTFEYFKQMFAQVTNPPIDPIREKIVTSMECMIGP 669 (1760)
Q Consensus 590 ~~~~~fgyt~E~~~~~l~pma~~g~E~igSMG~D~plA~ls~~~~~l~~yFkQ~FAQVTNPPID~iRE~~vmSl~~~~G~ 669 (1760)
++|++||||.||++++|.|||++|+||||||||||||||||++|++|||||||+||||||||||||||++||||+|+|||
T Consensus 2 ~~q~aFGyt~Ed~~~~l~pMa~~G~EpigSMG~DtPLAvLS~~~~~l~~YFkQ~FAQVTNPPID~iRE~~vmSl~~~lG~ 81 (287)
T PF04898_consen 2 RRQRAFGYTQEDLDMVLEPMAETGKEPIGSMGDDTPLAVLSEKPQNLFDYFKQLFAQVTNPPIDPIREELVMSLRTYLGP 81 (287)
T ss_dssp HHHHCTT--HHHHHCTCHHHHHHSS--EE-S---S--CCC-SS---GGGCEEE----SSS----TTTTGGG-B--EEES-
T ss_pred hhHHHhCCCHHHHHHHHHHHHhcCCcccccCCCCChhHhhcCCCCcHHHHHHHhhhhccCCCcchhhhhheeecceeeCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcCccceEEecCCccCHHHHHHHHhccCCCCeeEEEEEEeeCCCChhhHHHHHHHHHHHHHHHHHcCCcEEEE
Q 000266 670 EGVLTETTEEQCHRLSLKGPLLSIEEMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVL 749 (1760)
Q Consensus 670 ~~n~l~~~~~~~~~l~l~sPiL~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~l~~al~~l~~~a~~av~~G~~iliL 749 (1760)
++|+|++++++|++|+|.||||+++||++|++++.+.|++.+|+++|+..++.++|++||++||++|++||++|++||||
T Consensus 82 ~~n~l~~~~~~~~~l~l~sPiL~~~~l~~l~~~~~~~~~~~~l~~~f~~~~~~~~L~~aL~~l~~ea~~Av~~G~~ilIL 161 (287)
T PF04898_consen 82 RPNILEETPEHARRLELDSPILSNGQLEKLRSLDDPGFKAATLDATFPAEGGDEGLEEALDRLCEEAEAAVREGANILIL 161 (287)
T ss_dssp -S-TTS-SGGGC-CEEESSSB--HHHHHHHHHH--CCCCEEEEESEEESTTSTTCHHHHHHHHHHHHHHHHHCT-SEEEE
T ss_pred CCCCCCCCCCCceEEEecCCEECHHHHHHHHHhhccCCCccEEEEEEECCcChhHHHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 99999999999999999999999999999999988999999999999999888999999999999999999999999999
Q ss_pred cCCCCCCCCccccHHHHHHHHHHHHHHcCCCCceeEEEeeCCCCcHHHHHHHHhcCcccccHHHHHHHHHHHHHcCCCCC
Q 000266 750 SDRAFSSKRVAVSSLLAVGAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAICPYLATEAIWRLQVDGKIPP 829 (1760)
Q Consensus 750 sDr~~~~~~~~ip~lLav~avh~~Li~~~~R~~~~lvvesge~re~Hh~a~L~GyGA~av~Pyla~e~~~~~~~~~~~~~ 829 (1760)
|||+++++++|||+|||||||||||++.|+|+++||||||||+||+||||||+||||||||||||||++.+|.++|.+
T Consensus 162 sDr~~~~~~~~IP~lLAv~avh~~Li~~glR~~~slIvesge~re~Hh~a~LlGyGA~AV~PYla~e~~~~~~~~~~~-- 239 (287)
T PF04898_consen 162 SDRNASPDRAPIPSLLAVSAVHHHLIREGLRTRVSLIVESGEAREVHHFATLLGYGADAVNPYLAYETIRELAERGEL-- 239 (287)
T ss_dssp ESTC-CTTEEE--HHHHHHHHHHHHHCTT-CCC-EEEEEESS--SHHHHHHHHCTT-SEEEEHCCHHHHHHCCCCCCC--
T ss_pred CCCCCCcCcccccHHHHHHHHHHHHHHcCCcceeeEEEecCCcccHHHHHHHHcCCHhhhcHHHHHHHHHHHHhcCCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhhhcccccchhhhcCCCH
Q 000266 830 KASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEALGLSS 881 (1760)
Q Consensus 830 ~~~~~~~~~~~~~~ny~~a~~~GllKvmsKMGIstl~SY~gaqiFeavGl~~ 881 (1760)
. +++.+++++||++|++|||+|||||||||||+||+||||||||||++
T Consensus 240 ---~-~~~~~~~~~ny~~a~~kGllKimSKMGIstl~SY~gaqiFeaiGL~~ 287 (287)
T PF04898_consen 240 ---P-ELSPEEAIKNYRKALEKGLLKIMSKMGISTLQSYRGAQIFEAIGLSQ 287 (287)
T ss_dssp ---C-T--HHHHHHHHHHHHHHHHHHHHHCTT--BHHHHCCS--EEESSB--
T ss_pred ---C-CCCHHHHHHHHHHHHHHHHHHHHHhcChHHhhhcccceeeeeccCCC
Confidence 2 57999999999999999999999999999999999999999999985
|
In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: |
| >COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-102 Score=904.62 Aligned_cols=371 Identities=52% Similarity=0.893 Sum_probs=359.0
Q ss_pred CCCCCCCCCCCCceEEEEEEeCCCCchHhHHHHHHHHhcccccCCCCCCCCCCCcceeecccChHHHHHHHHhcCCCCCC
Q 000266 103 LGLYDPKFDKDSCGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILVALPHDFFKEAAKNVGFQLPP 182 (1760)
Q Consensus 103 ~gly~p~~E~DaCGVGfia~~~g~~sh~iv~~al~~L~~M~HRGa~~~d~~tGDGAGil~~iP~~ff~~~~~~~g~~lp~ 182 (1760)
+|||||.+||||||||||++++|++||+||+++++||+||+||||+++|+.+|||||+|+++|+.||++.++. |+++|+
T Consensus 1 ~gly~~~~e~daCGig~i~~~~g~~sh~iv~~~~~~L~~m~hRG~~~adg~~gdGagil~~~p~~f~~~~~~~-~~~~p~ 79 (371)
T COG0067 1 QGLYDPAFEHDACGIGGIAHKDGRPSHKIVEDALEALVNLTHRGAPGADGYAGDGAGILLQIPDYFFREEADK-GIKLPE 79 (371)
T ss_pred CCCCCCccccccCcEEEEEecCCCcchhHHHHHHHHHHhhhccCCCCCCcccccCcchhhcCCHHHHHHHHhc-ccCCCC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999997765 999999
Q ss_pred CCcceEEeEecCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecCCCCCCCCCccccCCCeEEEEEEcCCCCChhhHHHHHH
Q 000266 183 PGEYAVGMFFLPQSENRREESKKVFTKVAESLGHTVLGWRAVPTDNSGLGNSALQTEPVVEQVFLTPSLRSKVDFENQMY 262 (1760)
Q Consensus 183 ~g~YavG~~Flp~d~~~~~~~~~~ie~~~~~~gl~vlgwR~VPvd~~~lG~~a~~~~P~I~Q~fv~~~~~~~~~fer~Ly 262 (1760)
.|.|+|||+|+|++ +.+|++++++.+.++|+.|++||.||++++++|+.+.+++|.|.|+||. .+..+||++||
T Consensus 80 ~~~y~vg~~fl~~~---~~~~~~i~~~~~~~e~~~vlgwR~vp~~~~~~g~~a~~~~p~~~qv~i~---~~~~~~e~~l~ 153 (371)
T COG0067 80 AGFYAVGMVFLPQE---RAAAREIPEEEAVAEGLSVLGWRDVPVNSSVLGEVALATMPRIEQVFIG---ASGDDFERVLF 153 (371)
T ss_pred cccccceEEEeccc---hhhhhhhhhHHHhhcCCceeeEEecccCchhcchhhhhcCCchheeEee---cCchhhhhhhh
Confidence 99999999999987 6689999999999999999999999999999999999999999999997 45679999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCcEEEEEecCCeEEEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCC
Q 000266 263 ILRRVSMAAIRESLNLEHGGAKDFYICSLSSRTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRA 342 (1760)
Q Consensus 263 ~lRk~~e~~i~~~~~~~~~~~~~~yI~SlS~~tivyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~A 342 (1760)
+.||++ ++++. .+|||||+|++|+||||||+|.||.+||+ ||++++|+|++||+|+||||||+|+|.+|
T Consensus 154 i~r~~~----~~~~~------~~~yv~S~s~~t~VYKG~~~p~~V~~~y~-dl~~~~~~s~~~l~HsRFSTNT~p~W~~A 222 (371)
T COG0067 154 IARKRI----EKRIG------ADFYVCSLSSRTIVYKGVGLPEDVAEFYL-DLDDERYKSAIALVHTRFSTNTFPSWPLA 222 (371)
T ss_pred hhhhhh----hhccc------CCEEEEecCCCeEEEecccCHHHHHHHHh-hccchhhceeEEEEEeccCCCCCCCCCcc
Confidence 999999 55543 27999999999999999999999999999 99999999999999999999999999999
Q ss_pred CCceeeeccccccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcC
Q 000266 343 QPMRILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMI 422 (1760)
Q Consensus 343 QPfr~laHNGEInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~i 422 (1760)
||||++||||||||+++|+|||++|+..++|+.|+ +++.++.|++...+|||..|||+||+++..|+++++|+||++
T Consensus 223 HPfr~lvHNGEInT~~gN~nwm~ar~~~~~s~~~~---e~~a~l~p~~~~~~sDs~~~dn~lE~l~~~G~~l~~a~~m~~ 299 (371)
T COG0067 223 HPFRLLVHNGEINTYGGNRNWLEARGYKFESPTDG---EVLAKLLPILMRGGSDSASLDNALELLLLGGRDLYHAAMLLG 299 (371)
T ss_pred CcceeeeecceecccccHHHHHHHhhcccccCccH---HHHHHHHHHhcccCCcchhhhHHHHHHHhcCcCchhHHHhcC
Confidence 99999999999999999999999999999999999 799999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCHHHHHHHHHHHhccCCCCCCcEEEecCCceEEEccCCCCCCCceEEEEeCCEEEEEecccc
Q 000266 423 PEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGV 494 (1760)
Q Consensus 423 Peaw~~~~~m~~e~rafYey~s~lmepwdGPa~iv~tdG~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~ga 494 (1760)
|+||++++.|+++.++||+|++++|||||||+.++|+||++++|.||||||||.||+.|+|+.++++||.|+
T Consensus 300 P~aw~~~~~~~~~~~afye~~~~l~epwdGpa~~~f~dgse~gA~ldrngLrp~Ry~~t~d~~vv~~se~gv 371 (371)
T COG0067 300 PEAWVVGTDMDPEGRAFYEDHSALMEPWDGPADIVFTDGSEEGAILDRNGLRPARYWITKDGEVVVASEAGV 371 (371)
T ss_pred chhhccCCCCCcceEEEEehhhhCCCCccCCcceeEEeeeeeeeeeccCCCCcceEEEecCCEEEEEEeccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999885
|
|
| >PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-98 Score=886.84 Aligned_cols=361 Identities=54% Similarity=0.967 Sum_probs=315.0
Q ss_pred ceEEEEEEeCCCCchHhHHHHHHHHhcccccCCCCCCCCCCCcceeecccChHHHHHHHHhcCCCCCCCCcceEEeEecC
Q 000266 115 CGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILVALPHDFFKEAAKNVGFQLPPPGEYAVGMFFLP 194 (1760)
Q Consensus 115 CGVGfia~~~g~~sh~iv~~al~~L~~M~HRGa~~~d~~tGDGAGil~~iP~~ff~~~~~~~g~~lp~~g~YavG~~Flp 194 (1760)
|||||||+++|++||+||++++++|++|+||||| |++|||||||+++|||+||++..+..++.||+.++|||||+|+|
T Consensus 1 CGiG~ia~~~g~~s~~iv~~~l~~L~~m~HRG~~--d~~tGDGAGi~~~ip~~ff~~~~~~~~~~l~~~~~yavg~~Flp 78 (361)
T PF00310_consen 1 CGIGFIANIKGKPSHDIVDDALEALKRMEHRGGV--DGNTGDGAGILTDIPHDFFRKELKKAGINLPEKGDYAVGMFFLP 78 (361)
T ss_dssp -EEEEEEETTS--BSHHHHHHHHHHHHHGGGSTB--TSSCESEEEEEEE-THHHHHHHHHHCT----SGCGEEEEEEEE-
T ss_pred CEEEEEEeCCCCCchHHHHHHHHHHhcccccCCC--CCCCCcceEEEEechhHHHHHHHhhhccccccccccceeeeeCC
Confidence 9999999999999999999999999999999999 99999999999999999999887778999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEEecCCCCCCCCCccccCCCeEEEEEEcCCCCChhhHHHHHHHHHHHHHHHHHH
Q 000266 195 QSENRREESKKVFTKVAESLGHTVLGWRAVPTDNSGLGNSALQTEPVVEQVFLTPSLRSKVDFENQMYILRRVSMAAIRE 274 (1760)
Q Consensus 195 ~d~~~~~~~~~~ie~~~~~~gl~vlgwR~VPvd~~~lG~~a~~~~P~I~Q~fv~~~~~~~~~fer~Ly~lRk~~e~~i~~ 274 (1760)
++...+++ +++|++.++++|++||+||+||||+++||+.|++++|.|||+||.++.. ..+||++||++||++| +
T Consensus 79 ~~~~~~~~-~~~ie~~~~~~g~~vl~wR~vpv~~~~lg~~a~~~~P~i~Q~fv~~~~~-~~~~e~~l~~~rk~~e----~ 152 (361)
T PF00310_consen 79 RDEEQREE-KEIIEEVLEEEGLEVLGWREVPVNPSVLGPIARKTEPLIWQVFVAPPEG-EEEFERRLYLIRKRIE----K 152 (361)
T ss_dssp SSHHHHHH-HHHHHHHHHHTT-EEEEEEE--B-GGGS-HHHHHC--EEEEEEEE-TT--HHHHHHHHHHHHHHHH----H
T ss_pred CCHHHHHH-HHHHHHHHHHhcCeEEeEecCCcChhhccHhHHhcCCcEEEEEEECCcc-hhhHHHHHHHHHHHHH----H
Confidence 99887777 9999999999999999999999999999999999999999999987654 7899999999999994 4
Q ss_pred hhhhccCCCCcEEEEEecCCeEEEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCceeeeccccc
Q 000266 275 SLNLEHGGAKDFYICSLSSRTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRILGHNGEI 354 (1760)
Q Consensus 275 ~~~~~~~~~~~~yI~SlS~~tivyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr~laHNGEI 354 (1760)
..... +.|||||||++||||||||+|+||.+||+ ||++++|+|++||+|+||||||+|+|.+||||+++||||||
T Consensus 153 ~~~~~----~~~yv~SlS~~tivYKg~~~~~~l~~~y~-Dl~~~~~~s~~~i~H~RysTnt~p~w~~AqPf~~laHNGeI 227 (361)
T PF00310_consen 153 AIEED----DAFYVCSLSSRTIVYKGMGTPEQLAEFYP-DLQDEDFKSHFAIGHQRYSTNTFPSWENAQPFRALAHNGEI 227 (361)
T ss_dssp HHCCH----TTBEEEEEESSEEEEEECC-GGGHHHHCC-GGGCTTEEBSEEEEEEEE-SSSSCSGGGSSSEEEEEEEEEE
T ss_pred hhhhc----CCEEEEecCcchhhhhhccCHHHHHHHHH-hhccccccceEEEEEEecCCCCCCcchhcChHHHhhhcccc
Confidence 33322 34999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred cChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCH
Q 000266 355 NTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDP 434 (1760)
Q Consensus 355 nt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~ 434 (1760)
||+++|++||++|+..+.++.|| +++++.||+..++||||+||++||++++.|+++++|+|||+||+|++++.|++
T Consensus 228 nt~~~n~~~l~~r~~~~~~~~~~----~~~~~~pi~~~~~SDS~~l~~~le~l~~~g~~l~~a~~~l~p~~~~~~~~~~~ 303 (361)
T PF00310_consen 228 NTIRGNRNWLEARGYKLNSPLFG----DLKELLPIVNPGGSDSEVLDNLLELLLRRGRSLEEAMMMLIPPAWENDEDMSP 303 (361)
T ss_dssp TTHHHHHHHHHHHCCCBSSTTCG----HHHCC-SSS-TTS-HHHHHHHHHHHHHHTTSSHHHHHHHHSGG--TTSCCSTH
T ss_pred ccHHHHHHHHHhhcccccCcccc----chhhcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHhhCCcccccCccCCH
Confidence 99999999999999999999998 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCcEEEecCCceEEEccCCCCCCCceEEEEeCCEEEEEecc
Q 000266 435 QRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEV 492 (1760)
Q Consensus 435 e~rafYey~s~lmepwdGPa~iv~tdG~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~ 492 (1760)
++++||+|++++||||||||+|+|+||+.++|++|||||||+||+.++|+.|++|||+
T Consensus 304 ~~~~~y~~~~~~~~~~dGPaai~~~~g~~~~a~~Dr~GLRP~~~~~~~d~~~v~aSE~ 361 (361)
T PF00310_consen 304 EKRAFYEYHASLMEPWDGPAAIIFTDGNGVGAFLDRNGLRPLRYGITEDGLVVLASEA 361 (361)
T ss_dssp HHHHHHHHHHHHHCC--CCEEEEEECSSEEEEEE-TT--S--EEEEETTCEEEEESST
T ss_pred HHHHHHHHHHHhhccCCCceEEEEEeCCEEEEEECCCCCcceEEEEECCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999999888889999999995
|
This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B .... |
| >PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-82 Score=747.67 Aligned_cols=364 Identities=53% Similarity=0.799 Sum_probs=283.4
Q ss_pred cccCHHHHHHHHHHHhcCCHHHHHHHHHHHhhcccCcccccccccccCCCC-CCCCCCCCccccccceEecCCCcccCcH
Q 000266 945 HLNDPLAIAKLQEAARGNSVAAYKEYSKRIQELNKTCNLRGLLKFKEADVK-IPLEEVEPASEIVKRFCTGAMSYGSISL 1023 (1760)
Q Consensus 945 H~~~P~~i~~lq~a~r~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~-i~~~eVe~~t~i~~Pf~i~aMS~Gsls~ 1023 (1760)
|.|+|++++.||+|++.+++..|+.|++..++...+.++|++|+|+....+ |+.+++++..++..||++++||||+||+
T Consensus 1 h~~~p~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~~~~~~~i~~~~~~~p~~l~~p~~is~MS~GaLS~ 80 (368)
T PF01645_consen 1 HAYNPEVIKLLQKAVRVNSYESYKEYRERVNEREFPSALRDLLEFKYDEAPSIPGEKVEKPLELSIPFMISAMSYGALSE 80 (368)
T ss_dssp -SS-HHHHHHHHHHHHCT-HHHHHHHHHHHHTS--S-SGGGGEEE--SS-----GGGS--HHHHHTTEEEEEB-CTTC-H
T ss_pred CCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccccCcccccccCCCCcCchhhcCChhhheeeeecccCChhhcCH
Confidence 999999999999999999999999999999987778999999999765444 8899999888899999999999999999
Q ss_pred HHHHHHHHHHHHcCCceeccCCCCCccccCcCCCCCCchhhhh-eeecccCCcCCChhhhcCchhHHHhhhccCCCCCCC
Q 000266 1024 EAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRSA-IKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGG 1102 (1760)
Q Consensus 1024 ea~~aLA~Aa~~~G~~s~sGeGge~~e~~~~~~~g~~~~~~s~-IkQvasgrFGVt~~~L~~a~~iqIKiaQGAKpGeGG 1102 (1760)
+++++||+||+++|+.+||||||++|+++.. .... |+|++|++|||++++|.++++||||++||||||+||
T Consensus 81 ~a~~Ala~ga~~~G~~~ntGEGg~~~~~~~~--------~~~~~I~Q~~sg~fGv~~~~l~~a~~iEIKigQGAKpG~GG 152 (368)
T PF01645_consen 81 EAKEALAKGANMAGTASNTGEGGELPEERKA--------AKDLRIKQIASGRFGVRPEYLKQADMIEIKIGQGAKPGEGG 152 (368)
T ss_dssp HHHHHHHHHHHHCT-EEEETTT---GGGCSB---------TTSSEEEE-TT-TT--HHHHCC-SEEEEE---TTSTTT--
T ss_pred HHHHHHHHHHHHhCceEecCCCCCCHHHhcc--------cCCceEEEcCCCCCCCCHHHhcCCCeEEEEEecCccccCcc
Confidence 9999999999999999999999999998852 1234 999999999999999999999999999999999999
Q ss_pred CCCCccchHHHHHHhCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEE
Q 000266 1103 ELPGHKVIGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVL 1182 (1760)
Q Consensus 1103 ~Lpg~KV~~~IA~~R~~~pG~~lisP~~hhDiySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~Iv 1182 (1760)
+||+.||+++||++|+.+||++++||++||||||+|||.++|++||+.+|++||+||+++..++.+++..++++|+|+|+
T Consensus 153 ~Lp~~KV~~~ia~~R~~~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~It 232 (368)
T PF01645_consen 153 HLPGEKVTEEIARIRGVPPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFIT 232 (368)
T ss_dssp EE-GGG--HHHHHHHTS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEE
T ss_pred eechhhchHHHHHHhCCCCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhcc
Q 000266 1183 ISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGC 1262 (1760)
Q Consensus 1183 IsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc 1262 (1760)
|||++||||++|+++++++|+||+.+|++++++|+++|+|++|.||++|||+|+.||+||++||||+|+|||++|+|+||
T Consensus 233 IDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~~liAlGC 312 (368)
T PF01645_consen 233 IDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYIGTAALIALGC 312 (368)
T ss_dssp EE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHHHHHHCT-
T ss_pred EeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecchhhhhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCcccccChhhHhhc--CCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000266 1263 IMMRKCHKNTCPVGIATQDPVLREKF--AGEPEHVINFFFMLAEELREIMSQLGFR 1316 (1760)
Q Consensus 1263 ~~~r~ch~~~cP~giatqdp~Lr~~~--~g~~e~V~n~~~~l~~ELr~~Ma~lG~~ 1316 (1760)
+|||+||+|+||+||+||||+|++++ .+++++|.|||..+.+||+++|+.+|++
T Consensus 313 ~~~~~C~~~~CP~Giatq~~~l~~~l~~~~~~~~v~n~~~~~~~el~~~~~a~G~~ 368 (368)
T PF01645_consen 313 IQCRKCHTGTCPVGIATQDPKLRKRLDVEEKAERVANFLKACAEELREILAALGKR 368 (368)
T ss_dssp -S---CCCT--TTSSS---CCHH--CT----HHHHHHHHHHHHHHHHHHHHHHT-S
T ss_pred HHHhcccCCCCCceeeecCcccccccccccHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999666 5779999999999999999999999985
|
This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A. |
| >COG0070 GltB Glutamate synthase domain 3 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-73 Score=650.49 Aligned_cols=289 Identities=54% Similarity=0.860 Sum_probs=274.5
Q ss_pred cCCCCccccCcccCCCCCcccccccccCCCCchhHHHHHHHHHHHHHHcCCcEEEEecccccCcchhhhhhHHHHHhhcc
Q 000266 1342 ENIDLSLLLRPAADLRPEAAQYCVQKQDHGLDMALDQKLIKLSKAALEKALPVYIETPVCNVNRAVGTMLSHEVTKRYHL 1421 (1760)
Q Consensus 1342 ~~ldls~~l~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~l~~~~~~~~~~~i~n~dR~vG~~Ls~~i~~~~g~ 1421 (1760)
++||||++|. +.. +. .+|...|+|.+...||.+++.. .+++++++++.+..++.|++|++|+++|++|+++||.
T Consensus 2 ~~ldls~~l~-~~~--~~--~~~~~~~~~~~~~~lD~~~~~~-~~~~~n~~~~~~~~~i~N~~r~~g~~~~g~i~~~~G~ 75 (301)
T COG0070 2 KGLDLSPLLY-PED--PN--TYCEKRQDHGLEPVLDAKLLED-KPALENGEIVKILAEIRNVDRSVGANLSGEIAKGYGL 75 (301)
T ss_pred CccccccccC-ccc--cc--ccccccccccccccccchhccc-chhhhccCceEEEeeccceEEeeecccCCceeeeeCc
Confidence 5799999999 442 22 7778889999999999999988 9999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEEecCccchhhhcCCCCcEEEEEecCCchhhcCCCCceEEEeCCCCCCCCCCccccchhhhhccCcccEE
Q 000266 1422 VGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATSGEA 1501 (1760)
Q Consensus 1422 ~gl~~~~i~i~~~G~aGq~~Gaf~~~G~~i~v~G~A~DyvGkgmsGG~IvV~g~~~~~~~~~~~~i~Gn~~~yGatgG~i 1501 (1760)
.|||+++|+|+++|+||||||||+.+|++|+|+|||||||||||+||+|||+|| ++|++++|+|+||+|+||||||++
T Consensus 76 ~gl~~~~i~i~~~GsaGqsfGaf~~~G~~l~l~GdAnDyvGkgmsgG~IVV~~~--~~~~~~~~~i~Gn~~lyGatgG~~ 153 (301)
T COG0070 76 QGLPEDTVEINFNGSAGQSFGAFNAKGPTLELNGDANDYVGKGMSGGKIVVRGP--ARFKAEANIIVGNTVLYGATGGEL 153 (301)
T ss_pred CCCCCCcEEEEEEeccchhhhhhhcCCCEEEEEeccCCcccCCCCCcEEEEECC--CcccccCCceecceEEEeccCcEE
Confidence 999999999999999999999999889999999999999999999999999999 589999999999999999999999
Q ss_pred EEecccccccccccCCcEEEEcCCCccccccccCcEEEEeCCCCCcccCCCcceEEEEEcCCc-hhhcccCccceeeecC
Q 000266 1502 YFNGMAAERFCVRNSGARAVVEGVGDHGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYVLDVDG-KFRSRCNPELVDLDKV 1580 (1760)
Q Consensus 1502 ~v~G~aGeR~gvr~sG~~iVV~G~Gd~~~eyMtgG~ivVlG~~G~~~gagM~gG~iyv~~~~~-~~~~~~n~~~V~l~~~ 1580 (1760)
||+|+||+||||||||+++||||+|||+|||||||+|||||++|+|||+||+||+|||+|+++ +|..++|.++|+++++
T Consensus 154 fi~G~AGeRfaVrnsG~~~VVeG~GD~~cEYMtGG~VvVLG~~G~nfgaGMsGG~aYV~~~~~~~f~~~~n~~~ve~e~~ 233 (301)
T COG0070 154 FIRGNAGERFGVRNSGATAVVEGIGDHGCEYMTGGRVVVLGDTGRNFGAGMSGGVAYVRGEVGSDFPLGVNAELVELESL 233 (301)
T ss_pred EEecCceeeEEEEccCceEEEeccCcceecccCCCEEEEeCCcchhhcCcccceEEEEecCccchhhcCccceEEEeccC
Confidence 999999999999999999999999999999999999999999999999999999999999998 7999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhCcHHHHHHHhhhhhcCCCeEEEcccchHHHHHHHHHHH
Q 000266 1581 EEEEDIITLRMMIQQHQRYTNSQLAKEVLADFENLLPKFIKVFPRDYKRVLASMKVAA 1638 (1760)
Q Consensus 1581 ~~~~d~~~L~~ll~~h~~~t~s~~a~~iL~~w~~~~~~F~kv~P~~y~~~l~~~~~~~ 1638 (1760)
++++++++|++||++|+++|+|+.|++||+||+.+.++|+||+|++|++.+...+..+
T Consensus 234 ~~ed~~~~L~~li~~h~~~t~s~~a~~iL~~w~~~~~~f~kv~P~~~~~~~~~~~~~~ 291 (301)
T COG0070 234 TEEDEEEKLKELIEEHVEYTGSEKAKEILENWELYEEKFVKVKPREYRPFLLLNADAE 291 (301)
T ss_pred CcHHHHHHHHHHHHHHHHhhCCHHHHHHHhhHHhhhhhEEEEcchhhhhhhhhhHHHH
Confidence 8755559999999999999999999999999999999999999999999987665443
|
|
| >cd00982 gltB_C gltb_C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-69 Score=605.22 Aligned_cols=250 Identities=66% Similarity=1.049 Sum_probs=245.7
Q ss_pred HHHHHHHHHHHHH-HcCCcEEEEecccccCcchhhhhhHHHHHhhccCCCCCccEEEEEecCccchhhhcCCCCcEEEEE
Q 000266 1376 LDQKLIKLSKAAL-EKALPVYIETPVCNVNRAVGTMLSHEVTKRYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELE 1454 (1760)
Q Consensus 1376 ld~~~~~~~~~~l-~~~~~~~~~~~i~n~dR~vG~~Ls~~i~~~~g~~gl~~~~i~i~~~G~aGq~~Gaf~~~G~~i~v~ 1454 (1760)
||++||++++++| +++++++++++|.|+||++||+||++|+|+||+.|||+++|+|+++|+|||||||||++|++|+|+
T Consensus 1 ld~~~i~~~~~~~~~~~~~~~~~~~i~N~dRsvGt~ls~~i~~~~g~~gl~~~~i~i~~~G~aGq~~Gaf~~~G~~i~v~ 80 (251)
T cd00982 1 LDDKLIADAEPALIENGEPVTLEYPIRNTDRAVGTMLSGEIAKRYGEEGLPEDTIKIKFEGSAGQSFGAFLAKGVTLELE 80 (251)
T ss_pred ChHHHHHHHHHHHHhcCCeEEEEeeeEecccchhhHHHHHHHHHhcccCCCCCcEEEEEEcCCCceeeeecCCCCEEEEE
Confidence 6899999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCchhhcCCCCceEEEeCCCCCCCCCCccccchhhhhccCcccEEEEecccccccccccCCcEEEEcCCCcccccccc
Q 000266 1455 GDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCVRNSGARAVVEGVGDHGCEYMT 1534 (1760)
Q Consensus 1455 G~A~DyvGkgmsGG~IvV~g~~~~~~~~~~~~i~Gn~~~yGatgG~i~v~G~aGeR~gvr~sG~~iVV~G~Gd~~~eyMt 1534 (1760)
|||||||||+|+||+|+|+|++++.|.+++|+|+||+|+||||||+|||+|+||+|||+|||||++||+|+|||+|||||
T Consensus 81 G~A~dyvGk~m~GG~IvV~g~~~~~~~~~~~~i~Gn~~~~GmtgG~i~i~G~AG~R~gvr~sG~~iVV~G~Gd~~~EyMt 160 (251)
T cd00982 81 GDANDYVGKGLSGGRIVVRPPKDATFKPEENIIIGNVCLYGATSGEAFIRGRAGERFAVRNSGATAVVEGVGDHGCEYMT 160 (251)
T ss_pred ecccccccccccCCEEEEECCCcccccccccceehhhhhhccCCCEEEEeccccceeeeccCCCEEEEEecccceecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCCcccCCCcceEEEEEcCCchhhcccCccceeeecCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhhhhh
Q 000266 1535 GGTVVVLGKTGRNFAAGMSGGIAYVLDVDGKFRSRCNPELVDLDKVEEEEDIITLRMMIQQHQRYTNSQLAKEVLADFEN 1614 (1760)
Q Consensus 1535 gG~ivVlG~~G~~~gagM~gG~iyv~~~~~~~~~~~n~~~V~l~~~~~~~d~~~L~~ll~~h~~~t~s~~a~~iL~~w~~ 1614 (1760)
||+|||||++|+|+|+||+||+|||+|++++|.+++|+++|++.++++++|+++|++||++|+++|+|+.|++||+||++
T Consensus 161 GG~ivVlG~~G~~~gaGM~gG~iyv~~~~~~~~~~~n~~~V~~~~l~~~~d~~~l~~ll~~h~~~t~s~~a~~iL~~~~~ 240 (251)
T cd00982 161 GGTVVVLGKTGRNFAAGMSGGVAYVLDEDGDFEKKVNHEMVDLERLEDAEDEEQLKELIEEHVEYTGSEKAKEILANWEA 240 (251)
T ss_pred CCEEEEECCCCcCcccCCCCCEEEEECCcCChhhhcCHhhEeeccCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999997578999999999999999999999999999999
Q ss_pred cCCCeEEEccc
Q 000266 1615 LLPKFIKVFPR 1625 (1760)
Q Consensus 1615 ~~~~F~kv~P~ 1625 (1760)
++++||||+|+
T Consensus 241 ~~~~F~~v~P~ 251 (251)
T cd00982 241 YLKKFVKVIPR 251 (251)
T ss_pred HhCcEEEEEeC
Confidence 99999999995
|
This domain is found at the C-terminus of the large subunit (gltB) of glutamate synthase (GltS). GltS encodes a complex iron-sulfur flavoprotein that catalyzes the synthesis of L-glutamate from L-glutamine and 2-oxoglutarate. It requires the transfer of ammonia and electrons among three distinct active centers that carry out L-Gln hydrolysis, conversion of 2-oxoglutarate into L-Glu, and electron uptake from a donor. These catalytic sites appear to occur in other domains within the protein, and not the domain in this CD. This particular domain has no known function, but it likely has a structural role as it interacts with the amidotransferase and FMN-binding domains of gltS. |
| >cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-62 Score=585.70 Aligned_cols=360 Identities=53% Similarity=0.782 Sum_probs=321.4
Q ss_pred cCCHHHHHHHHHHHhhcc-cCcccccccccccCCCCCCCCC-------------CCCccccccceEecCCCcccCcHHHH
Q 000266 961 GNSVAAYKEYSKRIQELN-KTCNLRGLLKFKEADVKIPLEE-------------VEPASEIVKRFCTGAMSYGSISLEAH 1026 (1760)
Q Consensus 961 ~~~~~~~~~~~~~~~~~~-~~~~~r~ll~~~~~~~~i~~~e-------------Ve~~t~i~~Pf~i~aMS~Gsls~ea~ 1026 (1760)
.+.+..|..|.+..+... ...++|+++.|.......++.+ +.....+..||++++||||++|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~Pi~~~~Ms~Gs~s~~a~ 95 (392)
T cd02808 16 FNRAERYGVYNRAGNSRGRPFGTLRDLLEFGAQLAKHPLEPDEEVDDRVTIGPNAEKPLKLDSPFNISAMSFGALSKEAK 95 (392)
T ss_pred cCcHHHHHHHHHhhcCCCCCCCChhhhhhcCcccccCCCCcccccccceeeccccCCccccccceEecCCCCCcccHHHH
Confidence 345677888888766542 3468899997753222222221 12222334599999999999999999
Q ss_pred HHHHHHHHHcCCceeccCCCCCccccCcCCCCCCchhhhheeecccCCcCCChhhhcCchhHHHhhhccCCCCCCCCCCC
Q 000266 1027 TTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPG 1106 (1760)
Q Consensus 1027 ~aLA~Aa~~~G~~s~sGeGge~~e~~~~~~~g~~~~~~s~IkQvasgrFGVt~~~L~~a~~iqIKiaQGAKpGeGG~Lpg 1106 (1760)
.+||.||+++|+.+++|||+++|+++. .....++|+++++|||+.+++..+++||||++||||||.||+||+
T Consensus 96 ~aLa~aa~~aG~~~~~Gegg~~~~~~~--------~~~~~i~q~~~~~fGv~~~~~~~~~~ieik~~QGAkpg~gg~l~~ 167 (392)
T cd02808 96 EALAIGAALAGTASNTGEGGELPEERE--------GGGDIIKQVASGRFGVRPEYLNKADAIEIKIGQGAKPGEGGHLPG 167 (392)
T ss_pred HHHHHHHHhcCCceeecCCCCCHHHHh--------hhhheEEEecCCCCccCHHHcccCcEEEEEeccCCCCCCCCcccc
Confidence 999999999999999999999999874 134689999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHhCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecC
Q 000266 1107 HKVIGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGH 1186 (1760)
Q Consensus 1107 ~KV~~~IA~~R~~~pG~~lisP~~hhDiySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~ 1186 (1760)
.||+.+||..||.++|++++||++||||++++++.++|++||+.++++||+||++......+++..+.++|+|+|+|||+
T Consensus 168 ~Kv~~eiA~~r~~~~g~~~isp~~~~~~~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~ 247 (392)
T cd02808 168 EKVTEEIAKIRGIPPGVDLISPPPHHDIYSIEDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGA 247 (392)
T ss_pred ccCCHHHHHHhCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCC
Confidence 99999999999999999999999999999999999999999999866999999987656677888777778999999999
Q ss_pred CCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhcccccc
Q 000266 1187 DGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMR 1266 (1760)
Q Consensus 1187 ~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r 1266 (1760)
+||||++++..++++|+|++.+|+++++++...++|++++|+++|||+||.||+||++||||+|++||++|++++|.|+|
T Consensus 248 ~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~al~c~~~~ 327 (392)
T cd02808 248 EGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALIALGCIQAR 327 (392)
T ss_pred CCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHHhcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCcccccChhhHhhc--CCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCceee
Q 000266 1267 KCHKNTCPVGIATQDPVLREKF--AGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLE 1329 (1760)
Q Consensus 1267 ~ch~~~cP~giatqdp~Lr~~~--~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~dLl~ 1329 (1760)
+||+|+||+||+||+|.+++++ ..++++|.||+..+.+||+++|+.+|++++++| +++||+.
T Consensus 328 ~c~~~~cP~Giat~~~~~~~~~~~~~~~~~v~~~~~~~~~el~~~m~~~G~~~~~~l-~~~~l~~ 391 (392)
T cd02808 328 KCHTNTCPVGVATQDPELRRRLDVEGKAERVANYLKSLAEELRELAAALGKRSLELL-GRSDLLA 391 (392)
T ss_pred hcCCCCCCcccccCChHhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHhCCCChHHC-CHHHhhc
Confidence 9999999999999999997665 467999999999999999999999999999996 8888764
|
GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. |
| >cd00981 arch_gltB Archaeal-type gltB domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=360.06 Aligned_cols=203 Identities=31% Similarity=0.500 Sum_probs=174.5
Q ss_pred HHHHHcCCcEEEEecccccCcchhhhhhHHHHHhhccCCCCCccEEEEEecCccchhhhcCCCCcEEEEEecCCchhhcC
Q 000266 1385 KAALEKALPVYIETPVCNVNRAVGTMLSHEVTKRYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKG 1464 (1760)
Q Consensus 1385 ~~~l~~~~~~~~~~~i~n~dR~vG~~Ls~~i~~~~g~~gl~~~~i~i~~~G~aGq~~Gaf~~~G~~i~v~G~A~DyvGkg 1464 (1760)
..+++++.. .+.+.-...+|++|+ ||+ .+++|+++|++||++|+|| +|++|+|+|||+||||++
T Consensus 18 ~~~~~~g~~-~~~i~n~~g~~~ig~-------------gl~-~~~~I~v~G~aG~~~G~~m-~gg~I~v~Gna~d~~G~~ 81 (232)
T cd00981 18 REAVEKGAD-EIVLDNVLGQRYIGD-------------GLP-GNVRINIYGVPGNDLGAFM-SGPTIIVYGNAQDDVGNT 81 (232)
T ss_pred HHHHHcCCC-eEEEECCCCceeccc-------------CCC-CCEEEEEEecCcHHHHhhc-CCCEEEEEecchhhhhcc
Confidence 334556554 344433445566666 465 5788999999999999999 699999999999999999
Q ss_pred CCCceEEEeCCCCCCCCCCccccchhhhhccCcccEEEEecccccccccccC-----CcEEEEcC-CCccccccccCcEE
Q 000266 1465 LSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCVRNS-----GARAVVEG-VGDHGCEYMTGGTV 1538 (1760)
Q Consensus 1465 msGG~IvV~g~~~~~~~~~~~~i~Gn~~~yGatgG~i~v~G~aGeR~gvr~s-----G~~iVV~G-~Gd~~~eyMtgG~i 1538 (1760)
|+||+|+|+|+ +||+++|+|+||+|+|+|+||+|+|+||+ ||+|||+| +|||+||||+||+|
T Consensus 82 m~GG~I~V~G~------------aG~~~g~~m~GG~i~V~G~aG~r~G~~m~~~~~~gg~ivV~G~aGd~~ge~M~gG~i 149 (232)
T cd00981 82 MNDGKIVIHGS------------AGDVLGYAMRGGKIFIRGNAGYRVGIHMKEYKDKVPVLVIGGTAGDFLGEYMAGGVI 149 (232)
T ss_pred ccCcEEEEECC------------hHHHHHhhCcCcEEEEEecchhhhhhhcccccCCCCEEEEEeccCccccccccCCEE
Confidence 99999999999 89999999999999999999999999999 99999999 79999999999999
Q ss_pred EEeCC------CCCcccCCCcceEEEEEcCCchhhcccCccceeeecCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhhh
Q 000266 1539 VVLGK------TGRNFAAGMSGGIAYVLDVDGKFRSRCNPELVDLDKVEEEEDIITLRMMIQQHQRYTNSQLAKEVLADF 1612 (1760)
Q Consensus 1539 vVlG~------~G~~~gagM~gG~iyv~~~~~~~~~~~n~~~V~l~~~~~~~d~~~L~~ll~~h~~~t~s~~a~~iL~~w 1612 (1760)
||+|+ +|.++|++|+||+|||++..+. .++|.+.+ +.+++ ++|+++|+.+|++|.++|+|+++ ++++
T Consensus 150 vV~G~~~~~~~~G~~~G~gM~gG~i~v~G~~~~--~~~~~~~~-~~~~~-~~d~~~L~~li~~~~~~~~~~~~-~~~~-- 222 (232)
T cd00981 150 IVLGLGTDEEPVGRYIGTGMHGGVIYIRGKVER--SKLGKEVP-KFELT-EEDLEFIEKYIEEFCKEFGYDKA-EILD-- 222 (232)
T ss_pred EEECCCcccccccccccCCCcceEEEEEcCCCc--cccCcCcE-EecCC-HHHHHHHHHHHHHHHHHHCccHH-HHhh--
Confidence 99999 9999999999999999998764 35666644 55564 68999999999999999999997 4443
Q ss_pred hhcCCCeEEEcccc
Q 000266 1613 ENLLPKFIKVFPRD 1626 (1760)
Q Consensus 1613 ~~~~~~F~kv~P~~ 1626 (1760)
..|.|+.|++
T Consensus 223 ----~~~~kl~~~~ 232 (232)
T cd00981 223 ----EEFTKLKPKS 232 (232)
T ss_pred ----cCceEEecCC
Confidence 6788999863
|
This domain shares sequence similarity with a region of unknown function found in the large subunit of glutamate synthase, which is encoded by gltB and found in most bacteria and eukaryotes. It is predicted to be homologous to the C-terminal domain of glutamate synthase based upon sequence similarity coupled with genome organization data, showing that this domain is found in a gene cluster with other domains of Glts, which are annotated. This domain is found primarily in archaea, but is also present in a few bacteria, likely as a result of lateral gene transfer. |
| >cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=337.78 Aligned_cols=198 Identities=25% Similarity=0.316 Sum_probs=168.4
Q ss_pred EEEEEecCCeEEEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCcee----eeccccccChhhHH
Q 000266 286 FYICSLSSRTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRI----LGHNGEINTLRGNV 361 (1760)
Q Consensus 286 ~yI~SlS~~tivyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr~----laHNGEInt~~gN~ 361 (1760)
+|+.|++++..+||++|++.+|+++|. + +.++++++|+|+||||++.++|.++|||.. ++|||||+|++.++
T Consensus 45 ~~~~s~~~~~~~~K~~G~~~~v~~~~~--~--~~~~~~~~igH~R~aT~g~~~~~n~qP~~~~~~~lvhNG~I~N~~~lr 120 (249)
T cd01907 45 AFVYSSGKDMEVFKGVGYPEDIARRYD--L--EEYKGYHWIAHTRQPTNSAVWWYGAHPFSIGDIAVVHNGEISNYGSNR 120 (249)
T ss_pred eEEEecCCCeEEEeeccCHHHHHhhcC--c--hheEEEEEEEEEeccCCCCCCccCCCCeecCCEEEEeCCeecCHHHHH
Confidence 688898888889999999999999885 4 678999999999999999999999999975 79999999999999
Q ss_pred HHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHHHHHHHH
Q 000266 362 NWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYE 441 (1760)
Q Consensus 362 n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e~rafYe 441 (1760)
+++..+. ..+.+.||||++.++++.+.+.+.++.+|+++++ .|++++++||.
T Consensus 121 ~~L~~~g--------------------~~~~~~sDsEvi~~ll~~~~~~~g~~~~a~~~~i--------~~~~~~~~~~~ 172 (249)
T cd01907 121 EYLERFG--------------------YKFETETDTEVIAYYLDLLLRKGGLPLEYYKHII--------RMPEEERELLL 172 (249)
T ss_pred HHHHhcC--------------------CCCCCCCHHHHHHHHHHHHHHhCCChHHHHHHHh--------cCCHhHHHHHH
Confidence 9885332 2357899999999999877665568899998887 68999999998
Q ss_pred H--HHhccCCCCCCcEEEecCCceEEEccCCCCCCCceEEEEeCCEEEEEeccccccCCC-CcEEEccccCCCcEEEE
Q 000266 442 Y--FSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPP-EDVLRKGRLNPGMMLLV 516 (1760)
Q Consensus 442 y--~s~lmepwdGPa~iv~tdG~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~galdi~~-~~vv~kgrl~PGeml~v 516 (1760)
+ ....++.|||||++++.+++.+.++|||+|+||+ |++..++.|++|||.++|+..+ .+....++|+|||++++
T Consensus 173 ~~~~~~~~~~l~G~~a~~~~~~~~~~~~RD~~G~rPL-~~g~~~~~~~~ASE~~al~~~~~~~~~~~~~l~pGe~v~~ 249 (249)
T cd01907 173 ALRLTYRLADLDGPFTIIVGTPDGFIVIRDRIKLRPA-VVAETDDYVAIASEECAIREIPDRDNAKVWEPRPGEYVIW 249 (249)
T ss_pred HHHHHhCcccCCCCEEEEEEeCCeEEEEecCCCCccE-EEEEECCEEEEEEcHHHHhccCccchheEecCCCCceEeC
Confidence 7 5667899999999888888778889999999999 6888888999999999997442 21222258999999863
|
GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits. |
| >PF01493 GXGXG: GXGXG motif; InterPro: IPR002489 Glutamate synthase (GltS) is a complex iron-sulphur flavoprotein that catalyses the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the bacterial, yeast and plant pathways for ammonia assimilation [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=325.55 Aligned_cols=195 Identities=38% Similarity=0.590 Sum_probs=155.3
Q ss_pred EecccccCcchhhhhhHHHHHhhccCCCCCccEEEEEecCccchhhhcCCCCcEEEEEecCCchhhcCCCCceEEEeCCC
Q 000266 1397 ETPVCNVNRAVGTMLSHEVTKRYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPK 1476 (1760)
Q Consensus 1397 ~~~i~n~dR~vG~~Ls~~i~~~~g~~gl~~~~i~i~~~G~aGq~~Gaf~~~G~~i~v~G~A~DyvGkgmsGG~IvV~g~~ 1476 (1760)
+..+.|.+|.++..|+.++.+++++..++.+..+|.++|++||+||++|..|.+|+|+|+++||+|++|+||+|+|+||+
T Consensus 2 ~~~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~g~~G~~~ga~~~~g~~I~V~G~ag~~~G~~m~GG~I~V~Gn~ 81 (202)
T PF01493_consen 2 DEPVINADRFTGRRLNQSIVKRLGEGMLKKDTGTVIINGNAGQRFGAFMSGGLKIVVEGDAGDYVGKGMSGGTIIVKGNA 81 (202)
T ss_dssp -EEE-TT--STTHHHHHHHHHHCTTTSS-TTCEEEEEEEEE-TTTTTT-BTTEEEEEEEEE-STTTTT-ECCEEEEE--T
T ss_pred CeeeEcCCcchhhhhhHHHHHHHhcCCCCCCcEEEEEeCCCCCEEEecCCCCeEEEEEecccchhHhhCCCCEEEEECCc
Confidence 46789999999999999999999998877788889999999999999999998899999999999999999999999998
Q ss_pred CC--CCCCCccccchhhhhccCcccEEEEecccccccccccCCcEEEEcCC-CccccccccCcEEEEeCCCCCcccCCCc
Q 000266 1477 GS--LFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCVRNSGARAVVEGV-GDHGCEYMTGGTVVVLGKTGRNFAAGMS 1553 (1760)
Q Consensus 1477 ~~--~~~~~~~~i~Gn~~~yGatgG~i~v~G~aGeR~gvr~sG~~iVV~G~-Gd~~~eyMtgG~ivVlG~~G~~~gagM~ 1553 (1760)
+. ...-..+..+||+++|||++|+|+|+|+||+|+|++|+|++|+|+|. |+|+|+||+||+|+|+|++|+++|++|+
T Consensus 82 ~~~~~~~~~~~~~~G~~~~~Gm~gG~i~V~G~aG~r~g~~m~gg~iiV~G~~g~~~g~~M~gG~ivV~G~~G~~~g~~m~ 161 (202)
T PF01493_consen 82 GDDDGGGIVVSGSAGDYLGYGMRGGTIFVQGNAGSRAGIRMSGGTIIVEGNAGDFAGEYMTGGTIVVLGDAGDNAGAGMK 161 (202)
T ss_dssp T---SS-GGGSEEC-SSTTTT--CEEEEESSEE-TTTTTT-CCEEEEESEB--SSTTTT-EEEEEEESS-B-SSBTTT--
T ss_pred ccccccceEeeeeeeccccccccceEEEEEeccccceeeecceeEEEEeccccCCeeecccCCEEEEecCCCcccCCCCC
Confidence 86 33344567789999999999999999999999999999999999995 9999999999999999999999999999
Q ss_pred ceEEEEEcCCc-hhhcccCccceeeecCCC-HHHHHHHHH
Q 000266 1554 GGIAYVLDVDG-KFRSRCNPELVDLDKVEE-EEDIITLRM 1591 (1760)
Q Consensus 1554 gG~iyv~~~~~-~~~~~~n~~~V~l~~~~~-~~d~~~L~~ 1591 (1760)
||+|||+++.+ .|...+|.+.|+.+.|+. +++.++|++
T Consensus 162 gG~I~v~g~~~~~l~~~~~~~~v~~~~i~~~~~~~~~~~~ 201 (202)
T PF01493_consen 162 GGTIYVRGPVEDSLPGFVNEEEVEDEDIEKLDEELKQLKN 201 (202)
T ss_dssp CCEEEEE-TTS-THHHHB-CCCEEEEES-S-CCHHHHHHH
T ss_pred CeEEEEcCCCccccccccceeeeecccccCCHHHHHhhcc
Confidence 99999999998 788999999999999876 567777764
|
GltS is a multifunctional enzyme that functions through three distinct active centres carrying out multiple reaction steps: L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. The active centres are synchronised to avoid the wasteful consumption of L-glutamine []. There are three classes of GltS, which share many functional properties: bacterial NADPH-dependent GltS, ferredoxin-dependent GltS from photosynthetic cells, and NAD(P)H-dependent GltS from yeast, fungi and lower animals. The dimeric alpha subunits each consist of four domains: N-terminal amidotransferase domain, the central domain, the FMN binding domain and the C-terminal domain. The C-terminal domain forms a right-handed beta-helix that comprises seven helical turns []. Each helical turn has a sharp bend that is associated with a repeated sequence motif consisting of G-XX-G-XXX-G. This domain does not contain any residues directly involved in catalysis, but has a crucial structural role. This domain is also found in proteins such as subunit C of formylmethanofuran dehydrogenase, which catalyses the first step in methane formation from carbon dioxide in methanogenic archaea. There are two isoenzymes of formylmethanofuran dehydrogenase: a tungsten-containing isoenzyme (FwdC) and a molybdenum-containing isoenzyme (FmdC). The tungsten isoenzyme is constitutively transcribed, whereas transcription of the molybdenum operon is induced by molybdate [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A. |
| >cd00504 GXGXG GXGXG domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-32 Score=287.36 Aligned_cols=148 Identities=61% Similarity=0.975 Sum_probs=139.5
Q ss_pred cchhhhhhHHHHHhhccCCCCCccEEEEEecCccchhhhcCCCCcEEEEEecCCchhhcCCCCceEEEeCCCCCCCCCCc
Q 000266 1405 RAVGTMLSHEVTKRYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKV 1484 (1760)
Q Consensus 1405 R~vG~~Ls~~i~~~~g~~gl~~~~i~i~~~G~aGq~~Gaf~~~G~~i~v~G~A~DyvGkgmsGG~IvV~g~~~~~~~~~~ 1484 (1760)
|++|++++++|+++ .+++..+++|+++|++||++|++| .|++|+|+|||+||+|++|+||+|+|+||++ +.
T Consensus 1 ~~~g~~~~~~~~~~---~~~~~~~~~i~i~G~~g~~~G~~m-~gg~I~v~G~agd~~G~~m~GG~I~V~g~~~-----~~ 71 (149)
T cd00504 1 RAVGTRGSRYIGKR---PGLPEDTVEIIINGSAGQSFGAFM-AGGTITVEGNANDYVGKGMSGGEIVIHPPAG-----DE 71 (149)
T ss_pred CcEeEeeehhhhhc---cCCCCCcEEEEEEccCchHhhhhc-CCCEEEEEEcCchhhhccccCCEEEEecCCc-----cc
Confidence 56899999999998 567788999999999999999999 6889999999999999999999999999976 45
Q ss_pred cccchhhhhccCcccEEEEecccccccccccCCcEEEEcCC-CccccccccCcEEEEeCCCCCcccCCCcceEEEEEc
Q 000266 1485 NIVIGNVALYGATSGEAYFNGMAAERFCVRNSGARAVVEGV-GDHGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYVLD 1561 (1760)
Q Consensus 1485 ~~i~Gn~~~yGatgG~i~v~G~aGeR~gvr~sG~~iVV~G~-Gd~~~eyMtgG~ivVlG~~G~~~gagM~gG~iyv~~ 1561 (1760)
+-.+||.++|+|+||+|+|+|+||+|+|++|+|++|||+|. |+|+||||++|+|+|+|++|.++|++|++|+||+++
T Consensus 72 ~G~ag~~~~~gm~gG~i~V~G~AG~~~G~~m~GG~ivV~G~~g~~~g~~M~gG~ivV~G~~g~~~g~~M~gG~i~v~g 149 (149)
T cd00504 72 NGIAGNVALYGATGGKIFVRGNAGERFGVRMSGGTIVVEGVGDDFGGEYMTGGTIVVLGDAGRNFGAGMSGGVIYVRG 149 (149)
T ss_pred ceeehHhhhhhccCCEEEEEecchhhhhhhccCcEEEEEeecCccccccccCCEEEEeCCCCcCccccCcceEEEEeC
Confidence 66789999999999999999999999999999999999995 889999999999999999999999999999999985
|
This domain of unknown function is found at the C-terminus of the large subunit (gltB) of glutamate synthase (GltS), in subunit C of tungsten formylmethanofuran dehydrogenase (FwdC) and in subunit C of molybdenum formylmethanofuran dehydrogenase (FmdC). It is also found in a primarily archeal group of proteins predicted to encode part of the large subunit of GltS. It is characterized by a repeated GXXGXXXG motif. GltS is a complex iron-sulfur flavoprotein that catalyzes the synthesis of L-glutamate from L-glutamine and 2-oxoglutarate. It requires the transfer of ammonia and electrons among three distinct active centers that carry out L-Gln hydrolysis, conversion of 2-oxoglutarate into L-Glu, and electron uptake from a donor. These catalytic sites occur in other domains within the protein or or encoded by separate genes, and are not present in the domain in this CD. FwdC and FmdC are reversible ion pumps that catalyze the formylation and deformylation of met |
| >KOG0538 consensus Glycolate oxidase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-29 Score=282.93 Aligned_cols=308 Identities=19% Similarity=0.227 Sum_probs=225.1
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcc----cCcccccccccccCCCCCCCCCCCCcccccc-----ceEecCCCcccCc-HHH
Q 000266 956 QEAARGNSVAAYKEYSKRIQELN----KTCNLRGLLKFKEADVKIPLEEVEPASEIVK-----RFCTGAMSYGSIS-LEA 1025 (1760)
Q Consensus 956 q~a~r~~~~~~~~~~~~~~~~~~----~~~~~r~ll~~~~~~~~i~~~eVe~~t~i~~-----Pf~i~aMS~Gsls-~ea 1025 (1760)
+.|..+-+..+|.+|.+.++|+. |..++|.++ || ||..++++.+|.+|+|++ ||+|+|.++..+. +++
T Consensus 9 ~~A~~~L~K~a~dyy~sgA~d~~Tl~~N~~AF~ri~-~r-Pr~L~dVs~iD~sTtvlG~~i~~Pi~iapTa~qkma~pdG 86 (363)
T KOG0538|consen 9 ALAKQQLPKMAYDYYESGAEDQETLDENINAFRRIL-FR-PRILRDVSKIDTSTTVLGQKISAPIMIAPTAMQKMAHPDG 86 (363)
T ss_pred HHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHhhh-cc-chhheecccccccceeccccccceeEEcchHHHhccCCcc
Confidence 44555557889999999998875 667889988 87 889999999999999997 9999999999874 899
Q ss_pred HHHHHHHHHHcCCc-eeccCCCCCccccCcCC-CC----------CCc------------hhhhheeecccCCcCCChhh
Q 000266 1026 HTTLATAMNKIGGK-SNTGEGGEQPSRMEPLS-DG----------SMN------------PKRSAIKQVASGRFGVSSYY 1081 (1760)
Q Consensus 1026 ~~aLA~Aa~~~G~~-s~sGeGge~~e~~~~~~-~g----------~~~------------~~~s~IkQvasgrFGVt~~~ 1081 (1760)
+.+-|+||.++|+. +.|.-...+.|++.... ++ +++ -.+.++..+...++|.+..+
T Consensus 87 E~~taraa~~~~~~~i~Ss~at~S~EdI~~aap~~~rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~lG~R~~D 166 (363)
T KOG0538|consen 87 ELATARAAQAAGTIMILSSWATCSVEDIASAAPPGIRWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRLGRRESD 166 (363)
T ss_pred cHHHHHHHHhcCCcEEEechhcCCHHHHHhhCCCCcEEEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccccCchhh
Confidence 99999999999995 55666678888876432 22 000 01122333333344444333
Q ss_pred hcCchhH--HHhhh--ccCCCCCCCCCCCccchHHHHHHhCCCCccc-ccCCCCCCCCCCHHHHHHHHHHHHHhCCCCce
Q 000266 1082 LTNADEL--QIKMA--QGAKPGEGGELPGHKVIGDIAVTRNSTAGVG-LISPPPHHDIYSIEDLAQLIYDLKNANPGARI 1156 (1760)
Q Consensus 1082 L~~a~~i--qIKia--QGAKpGeGG~Lpg~KV~~~IA~~R~~~pG~~-lisP~~hhDiySiedLaqlI~~Lk~~~p~~pV 1156 (1760)
+.|-..+ .|++. +|-+-++ +.+.- ..|.. ..+-.+++. .+|+| |.|||..+ +.||
T Consensus 167 ~~n~f~lp~~l~lknfe~~~~~~--------v~~~~------~sg~~~~~~~~id~S-l~W~D----i~wLr~~T-~LPI 226 (363)
T KOG0538|consen 167 IKNKFSLPKNLTLKNFEGLKLTE--------VEEAG------DSGLAAYVSSQIDPS-LSWKD----IKWLRSIT-KLPI 226 (363)
T ss_pred hhhcccCCccccccccccccccc--------CCccc------chhhhhhhhcCCCCC-CChhh----hHHHHhcC-cCCe
Confidence 3331111 11221 1111110 00000 00000 011111221 24566 88999997 9999
Q ss_pred EEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCH
Q 000266 1157 SVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTG 1236 (1760)
Q Consensus 1157 ~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG 1236 (1760)
+||.+-. +..|..|+++|+++|+||+|+|+. .+..+.++.+|+|+.++ +.++++|+.|||+|+|
T Consensus 227 vvKGilt---~eDA~~Ave~G~~GIIVSNHGgRQ--------lD~vpAtI~~L~Evv~a-----V~~ri~V~lDGGVR~G 290 (363)
T KOG0538|consen 227 VVKGVLT---GEDARKAVEAGVAGIIVSNHGGRQ--------LDYVPATIEALPEVVKA-----VEGRIPVFLDGGVRRG 290 (363)
T ss_pred EEEeecc---cHHHHHHHHhCCceEEEeCCCccc--------cCcccchHHHHHHHHHH-----hcCceEEEEecCcccc
Confidence 9997644 467888999999999999998874 56677799999999998 5678999999999999
Q ss_pred HHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000266 1237 RDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFR 1316 (1760)
Q Consensus 1237 ~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~ 1316 (1760)
.||+||+||||.+|.+|++++++++|. +..||..+++.+.+|++..|++.|++
T Consensus 291 ~DVlKALALGAk~VfiGRP~v~gLA~~---------------------------Ge~GV~~vl~iL~~efe~tmaLsGc~ 343 (363)
T KOG0538|consen 291 TDVLKALALGAKGVFIGRPIVWGLAAK---------------------------GEAGVKKVLDILRDEFELTMALSGCR 343 (363)
T ss_pred hHHHHHHhcccceEEecCchheeeccc---------------------------cchhHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999986 48999999999999999999999999
Q ss_pred ChhhhcCCCceee
Q 000266 1317 TITEMIGRSDMLE 1329 (1760)
Q Consensus 1317 si~ELigr~dLl~ 1329 (1760)
|+.|+ .+..++.
T Consensus 344 sv~ei-~~~~v~~ 355 (363)
T KOG0538|consen 344 SVKEI-TRNHVLT 355 (363)
T ss_pred chhhh-Cccceee
Confidence 99996 7666443
|
|
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-28 Score=287.94 Aligned_cols=274 Identities=23% Similarity=0.274 Sum_probs=209.5
Q ss_pred CCCCCCCCCCCCcccccc-----ceEecCCCccc-CcHHHHHHHHHHHHHcCCceeccCCC---CCccccCcCCCCCCch
Q 000266 992 ADVKIPLEEVEPASEIVK-----RFCTGAMSYGS-ISLEAHTTLATAMNKIGGKSNTGEGG---EQPSRMEPLSDGSMNP 1062 (1760)
Q Consensus 992 ~~~~i~~~eVe~~t~i~~-----Pf~i~aMS~Gs-ls~ea~~aLA~Aa~~~G~~s~sGeGg---e~~e~~~~~~~g~~~~ 1062 (1760)
+.+.+++++||++++|++ ||+++||++|+ ++.+.+.+||++|+++|+.+++|+++ ++|+ +. .
T Consensus 39 ~lp~~~~~~vd~s~~~~g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~~~~~~~-~~--------~ 109 (352)
T PRK05437 39 ALPELDLDDIDLSTEFLGKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRAALKDPE-LA--------D 109 (352)
T ss_pred cCCCCChhhccceeeECCceecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHhhccChh-hH--------H
Confidence 567889999999999974 99999999996 58899999999999999999999985 4555 32 1
Q ss_pred hhhheeecc-cCCcCCChhh--h--cCchhHH--HhhhccCCCCCCCCCCCccchHHHHHHhCCCCcccccCCCCCCCCC
Q 000266 1063 KRSAIKQVA-SGRFGVSSYY--L--TNADELQ--IKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHHDIY 1135 (1760)
Q Consensus 1063 ~~s~IkQva-sgrFGVt~~~--L--~~a~~iq--IKiaQGAKpGeGG~Lpg~KV~~~IA~~R~~~pG~~lisP~~hhDiy 1135 (1760)
....+++.+ +++|.+|... + .+.+.++ +.+. +| -|..-|.++++++++|.++.|+
T Consensus 110 ~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~-~a----------------dal~l~l~~~qe~~~p~g~~~f- 171 (352)
T PRK05437 110 SFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMI-EA----------------DALQIHLNPLQELVQPEGDRDF- 171 (352)
T ss_pred HHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhc-CC----------------CcEEEeCccchhhcCCCCcccH-
Confidence 235677777 4444433211 0 0111111 1111 01 0122356788899999988774
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccc-----------cccccCCC
Q 000266 1136 SIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWT-----------GIKNAGLP 1204 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~-----------si~~~GlP 1204 (1760)
+.+.+.|.++++.. +.||+||++...-....|..+.++|+|+|+|+|+ |||++++.. ...+||+|
T Consensus 172 --~~~le~i~~i~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~-GGt~~~~ie~~R~~~~~~~~~~~~~g~p 247 (352)
T PRK05437 172 --RGWLDNIAEIVSAL-PVPVIVKEVGFGISKETAKRLADAGVKAIDVAGA-GGTSWAAIENYRARDDRLASYFADWGIP 247 (352)
T ss_pred --HHHHHHHHHHHHhh-CCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCC-CCCCccchhhhhhhccccccccccccCC
Confidence 45677888888876 8999999974322245677899999999999998 788776432 24578999
Q ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhh
Q 000266 1205 WELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVL 1284 (1760)
Q Consensus 1205 ~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~L 1284 (1760)
+..+|.++.+.+ .++|||++|||+++.||+|++++||++|++||++|.++
T Consensus 248 t~~~l~~i~~~~------~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~~------------------------ 297 (352)
T PRK05437 248 TAQSLLEARSLL------PDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKAA------------------------ 297 (352)
T ss_pred HHHHHHHHHHhc------CCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHHH------------------------
Confidence 999999998863 36999999999999999999999999999999999875
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCceeec
Q 000266 1285 REKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEV 1330 (1760)
Q Consensus 1285 r~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~dLl~~ 1330 (1760)
..+++++|.++++.+.+||+.+|+.+|+++++||.+ .+++..
T Consensus 298 ---~~~g~~~v~~~i~~~~~eL~~~m~~~G~~~i~eL~~-~~~~~~ 339 (352)
T PRK05437 298 ---LEGGEEAVIELIEQWIEELKIAMFLTGAKNIAELRK-VPLVLS 339 (352)
T ss_pred ---HhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCC-CCEEec
Confidence 235689999999999999999999999999999854 554443
|
|
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-28 Score=286.49 Aligned_cols=312 Identities=19% Similarity=0.190 Sum_probs=226.8
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHhhcc----cCcccccccccccCCCCCCCCCCCCcccccc-----ceEecCCCccc
Q 000266 951 AIAKLQEAARGN-SVAAYKEYSKRIQELN----KTCNLRGLLKFKEADVKIPLEEVEPASEIVK-----RFCTGAMSYGS 1020 (1760)
Q Consensus 951 ~i~~lq~a~r~~-~~~~~~~~~~~~~~~~----~~~~~r~ll~~~~~~~~i~~~eVe~~t~i~~-----Pf~i~aMS~Gs 1020 (1760)
.+..|.+++|.. +...|.||...++++. |...++.+. |+ |+...+++++|+++++++ ||+++||+++.
T Consensus 7 ~i~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~a~~~~~-l~-prvL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~ 84 (351)
T cd04737 7 NLYDLEAEAKKVIPKGAFGYIAGGSEDEWTLRENTRAFNHKQ-IV-PRVLQGVESPDTSTELLGIKLKTPIIMAPIAAHG 84 (351)
T ss_pred cHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcC-ee-chhccCCCCCCCceEeCCccccchhhhHHHHHHH
Confidence 367788888766 8999999999887764 566677766 77 889999999999999997 99999999998
Q ss_pred Cc-HHHHHHHHHHHHHcCCcee-ccCCCCCccccCcCCCCCCchhhhheeeccc-CCcCCChhhhcCchhH---HHhhhc
Q 000266 1021 IS-LEAHTTLATAMNKIGGKSN-TGEGGEQPSRMEPLSDGSMNPKRSAIKQVAS-GRFGVSSYYLTNADEL---QIKMAQ 1094 (1760)
Q Consensus 1021 ls-~ea~~aLA~Aa~~~G~~s~-sGeGge~~e~~~~~~~g~~~~~~s~IkQvas-grFGVt~~~L~~a~~i---qIKiaQ 1094 (1760)
+. ++++.++|+||.++|+..+ |+.++.+.|++.....+ ...+.|++- ...+++...+..+++. .|.+.+
T Consensus 85 l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~Eei~~~~~~-----~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTv 159 (351)
T cd04737 85 LAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKASNG-----GPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTA 159 (351)
T ss_pred hcCCchHHHHHHHHHHcCCCEEecCCCCCCHHHHHHhcCC-----CCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 74 6999999999999999755 78888899988643211 135677743 4456666666665543 122222
Q ss_pred cCCCCCCCCCCCccchHHHHHHhCC--------------C--CcccccCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEE
Q 000266 1095 GAKPGEGGELPGHKVIGDIAVTRNS--------------T--AGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISV 1158 (1760)
Q Consensus 1095 GAKpGeGG~Lpg~KV~~~IA~~R~~--------------~--pG~~lisP~~hhDiySiedLaqlI~~Lk~~~p~~pV~V 1158 (1760)
.+ |-.| +...++...... . ++..-..+.-++++ +|++ |.+||+.+ +.||+|
T Consensus 160 D~-p~~g------~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----l~~lr~~~-~~Pviv 226 (351)
T cd04737 160 DA-TVGG------NREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAAKQKL-SPAD----IEFIAKIS-GLPVIV 226 (351)
T ss_pred CC-CCCC------cchHHHHhcCCCCcccchhhhhccccccCcchhhhhhhccCCC-CHHH----HHHHHHHh-CCcEEE
Confidence 22 1000 001111100000 0 00000111111222 5555 67788876 799999
Q ss_pred EEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHH
Q 000266 1159 KLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRD 1238 (1760)
Q Consensus 1159 Klv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~D 1238 (1760)
|.+ .....|..+.++|+|+|+||||+|.. .+.+.+++..|+++.+.+ +++++||+||||++|.|
T Consensus 227 Kgv---~~~~dA~~a~~~G~d~I~vsnhGGr~--------ld~~~~~~~~l~~i~~a~-----~~~i~vi~dGGIr~g~D 290 (351)
T cd04737 227 KGI---QSPEDADVAINAGADGIWVSNHGGRQ--------LDGGPASFDSLPEIAEAV-----NHRVPIIFDSGVRRGEH 290 (351)
T ss_pred ecC---CCHHHHHHHHHcCCCEEEEeCCCCcc--------CCCCchHHHHHHHHHHHh-----CCCCeEEEECCCCCHHH
Confidence 965 33467888999999999999996543 234556678888887773 45799999999999999
Q ss_pred HHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCh
Q 000266 1239 VAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTI 1318 (1760)
Q Consensus 1239 VaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si 1318 (1760)
|+||++|||++|++||++|++++. +++++|.++++.+.+||+..|+++|++++
T Consensus 291 i~kaLalGA~~V~iGr~~l~~la~---------------------------~G~~gv~~~l~~l~~El~~~m~l~G~~~i 343 (351)
T cd04737 291 VFKALASGADAVAVGRPVLYGLAL---------------------------GGAQGVASVLEHLNKELKIVMQLAGTRTI 343 (351)
T ss_pred HHHHHHcCCCEEEECHHHHHHHhh---------------------------chHHHHHHHHHHHHHHHHHHHHHHCCCCH
Confidence 999999999999999999998753 36899999999999999999999999999
Q ss_pred hhhcCCCc
Q 000266 1319 TEMIGRSD 1326 (1760)
Q Consensus 1319 ~ELigr~d 1326 (1760)
+|| .+.+
T Consensus 344 ~el-~~~~ 350 (351)
T cd04737 344 EDV-KRTF 350 (351)
T ss_pred HHh-CCCC
Confidence 997 5544
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-27 Score=282.81 Aligned_cols=314 Identities=18% Similarity=0.210 Sum_probs=222.7
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHhhcc----cCcccccccccccCCCCCCCCCCCCcccccc-----ceEecCCCcccC
Q 000266 952 IAKLQEAARGN-SVAAYKEYSKRIQELN----KTCNLRGLLKFKEADVKIPLEEVEPASEIVK-----RFCTGAMSYGSI 1021 (1760)
Q Consensus 952 i~~lq~a~r~~-~~~~~~~~~~~~~~~~----~~~~~r~ll~~~~~~~~i~~~eVe~~t~i~~-----Pf~i~aMS~Gsl 1021 (1760)
+.-+.+++|.. +...|.||...++++. |...++.+. |+ ||...+++++|++++|++ ||+++||++..+
T Consensus 6 i~D~e~~Ar~~lp~~~~~y~~gga~de~t~~~N~~af~r~~-l~-PRvLrdv~~~d~~t~~lG~~~~~Pi~iAP~g~~~l 83 (367)
T PLN02493 6 VTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARIL-FR-PRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKM 83 (367)
T ss_pred HHHHHHHHHHhCCHHHHHHHccCcchhHHHHHHHHHHHhCC-ee-cccccCCCCCCCceEECCccccccceechHHHHhh
Confidence 56677777665 8999999999888764 556677765 77 889999999999999997 999999999886
Q ss_pred -cHHHHHHHHHHHHHcCCc-eeccCCCCCccccCcCCCCCCchhhhheeecccC-CcCCChhhhcCchhH-----HHhhh
Q 000266 1022 -SLEAHTTLATAMNKIGGK-SNTGEGGEQPSRMEPLSDGSMNPKRSAIKQVASG-RFGVSSYYLTNADEL-----QIKMA 1093 (1760)
Q Consensus 1022 -s~ea~~aLA~Aa~~~G~~-s~sGeGge~~e~~~~~~~g~~~~~~s~IkQvasg-rFGVt~~~L~~a~~i-----qIKia 1093 (1760)
.++++.++|+||.++|+. ..|.-++.+.|++....++ ..++|++-. .-+++...+..|+.. -+.+.
T Consensus 84 ~hp~gE~a~AraA~~~gi~~~lSt~ss~slEeva~~~~~------~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD 157 (367)
T PLN02493 84 AHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPG------IRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVD 157 (367)
T ss_pred cCCchHHHHHHHHHHcCCCeeecCcccCCHHHHHhcCCC------CcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 689999999999999995 5555567788887543222 356776532 123344444333221 11111
Q ss_pred ccCCCCCC--------C-CCCCccch-HHHHHHhCCCC----cccccCC-CCCCC-CCCHHHHHHHHHHHHHhCCCCceE
Q 000266 1094 QGAKPGEG--------G-ELPGHKVI-GDIAVTRNSTA----GVGLISP-PPHHD-IYSIEDLAQLIYDLKNANPGARIS 1157 (1760)
Q Consensus 1094 QGAKpGeG--------G-~Lpg~KV~-~~IA~~R~~~p----G~~lisP-~~hhD-iySiedLaqlI~~Lk~~~p~~pV~ 1157 (1760)
-|..| + .+|. +.+ ..+...+...+ +..+... ....| -.+|+| |.|||+.+ +.||+
T Consensus 158 ---~p~~G~R~~d~r~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~d----i~wlr~~~-~~Pii 228 (367)
T PLN02493 158 ---TPRLGRRESDIKNRFTLPP-NLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKD----VQWLQTIT-KLPIL 228 (367)
T ss_pred ---CCCCCcchhhhcccCCCCc-ccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHH----HHHHHhcc-CCCEE
Confidence 01100 0 0111 000 00000000000 0000000 00011 125655 88899887 89999
Q ss_pred EEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHH
Q 000266 1158 VKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGR 1237 (1760)
Q Consensus 1158 VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~ 1237 (1760)
||.+ .....|..+.++|+|+|+||||+|+. .++++|++.+|+++.+++ .++++|++|||||+|.
T Consensus 229 vKgV---~~~~dA~~a~~~Gvd~I~VsnhGGrq--------ld~~~~t~~~L~ei~~av-----~~~~~vi~dGGIr~G~ 292 (367)
T PLN02493 229 VKGV---LTGEDARIAIQAGAAGIIVSNHGARQ--------LDYVPATISALEEVVKAT-----QGRIPVFLDGGVRRGT 292 (367)
T ss_pred eecC---CCHHHHHHHHHcCCCEEEECCCCCCC--------CCCchhHHHHHHHHHHHh-----CCCCeEEEeCCcCcHH
Confidence 9986 34678889999999999999997653 356778999999998874 4579999999999999
Q ss_pred HHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 000266 1238 DVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRT 1317 (1760)
Q Consensus 1238 DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~s 1317 (1760)
||+||++|||++|++|+++|+++.+ ++.++|.++++.+.+|++..|+++|+++
T Consensus 293 Dv~KALALGA~aV~iGr~~l~~l~~---------------------------~G~~gv~~~l~~l~~el~~~m~l~G~~~ 345 (367)
T PLN02493 293 DVFKALALGASGIFIGRPVVFSLAA---------------------------EGEAGVRKVLQMLRDEFELTMALSGCRS 345 (367)
T ss_pred HHHHHHHcCCCEEEEcHHHHHHHHh---------------------------cCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999998754 3689999999999999999999999999
Q ss_pred hhhhcCCCc
Q 000266 1318 ITEMIGRSD 1326 (1760)
Q Consensus 1318 i~ELigr~d 1326 (1760)
+.|| .+..
T Consensus 346 i~~l-~~~~ 353 (367)
T PLN02493 346 LKEI-SRNH 353 (367)
T ss_pred HHHh-Chhh
Confidence 9997 4443
|
|
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-27 Score=280.16 Aligned_cols=265 Identities=23% Similarity=0.284 Sum_probs=201.4
Q ss_pred CCCCCCCCCCCCcccccc-----ceEecCCCccc-CcHHHHHHHHHHHHHcCCceeccCCC---CCccccCcCCCCCCch
Q 000266 992 ADVKIPLEEVEPASEIVK-----RFCTGAMSYGS-ISLEAHTTLATAMNKIGGKSNTGEGG---EQPSRMEPLSDGSMNP 1062 (1760)
Q Consensus 992 ~~~~i~~~eVe~~t~i~~-----Pf~i~aMS~Gs-ls~ea~~aLA~Aa~~~G~~s~sGeGg---e~~e~~~~~~~g~~~~ 1062 (1760)
..+.+++++||++++|++ ||+++||++|+ .+.+++..||++|+++|+.+++|+++ .+||...
T Consensus 31 ~l~~~~~~~id~s~~~~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~e~~~--------- 101 (326)
T cd02811 31 ALPELDLDDIDLSTEFLGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQRAALEDPELAE--------- 101 (326)
T ss_pred cCCCCCcccCCCeeEECCceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCchhhccChhhhh---------
Confidence 456788999999999876 99999999986 57889999999999999999999874 3555331
Q ss_pred hhhheeeccc-CCcCCChhhhc----CchhHH--HhhhccCCCCCCCCCCCccchHHHHHHhCCCCcccccCCCCCCCCC
Q 000266 1063 KRSAIKQVAS-GRFGVSSYYLT----NADELQ--IKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHHDIY 1135 (1760)
Q Consensus 1063 ~~s~IkQvas-grFGVt~~~L~----~a~~iq--IKiaQGAKpGeGG~Lpg~KV~~~IA~~R~~~pG~~lisP~~hhDiy 1135 (1760)
....+++.++ .+|.++..... +.+.++ +++. +|. |..-|.++.+++++|..+.|+
T Consensus 102 ~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~-~ad----------------alel~l~~~q~~~~~~~~~df- 163 (326)
T cd02811 102 SFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMI-EAD----------------ALAIHLNPLQEAVQPEGDRDF- 163 (326)
T ss_pred HHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhc-CCC----------------cEEEeCcchHhhcCCCCCcCH-
Confidence 2345677766 44433321100 111111 1111 110 112256778888899887774
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCcc-------------ccccccC
Q 000266 1136 SIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRW-------------TGIKNAG 1202 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~-------------~si~~~G 1202 (1760)
+.+.+.|.++++.. +.||+||++...-....|..+.++|+|+|+|+|+ |||.+... ....+||
T Consensus 164 --~~~~~~i~~l~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~-GGt~~~~ie~~r~~~~~~~~~~~~~~~g 239 (326)
T cd02811 164 --RGWLERIEELVKAL-SVPVIVKEVGFGISRETAKRLADAGVKAIDVAGA-GGTSWARVENYRAKDSDQRLAEYFADWG 239 (326)
T ss_pred --HHHHHHHHHHHHhc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCC-CCCccccccccccccccccccccccccc
Confidence 45667788888775 8899999965422346778899999999999998 77665531 3346789
Q ss_pred CCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccCh
Q 000266 1203 LPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDP 1282 (1760)
Q Consensus 1203 lP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp 1282 (1760)
+|+...|+++.+.+ .++|||++|||+++.||+||++|||++|++||++|.++
T Consensus 240 ~~t~~~l~~~~~~~------~~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~~---------------------- 291 (326)
T cd02811 240 IPTAASLLEVRSAL------PDLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAA---------------------- 291 (326)
T ss_pred ccHHHHHHHHHHHc------CCCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHHH----------------------
Confidence 99999999987763 16999999999999999999999999999999999875
Q ss_pred hhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhh
Q 000266 1283 VLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEM 1321 (1760)
Q Consensus 1283 ~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~EL 1321 (1760)
+. ++++|.++++.+.+||+.+|.++|++|++||
T Consensus 292 -----~~-g~~~~~~~i~~~~~el~~~m~~~G~~si~el 324 (326)
T cd02811 292 -----LE-GEEAVIETIEQIIEELRTAMFLTGAKNLAEL 324 (326)
T ss_pred -----hc-CHHHHHHHHHHHHHHHHHHHHHhCCCCHHHh
Confidence 23 6899999999999999999999999999997
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-28 Score=285.09 Aligned_cols=183 Identities=23% Similarity=0.286 Sum_probs=148.4
Q ss_pred CCcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCcee--------eecccc
Q 000266 283 AKDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRI--------LGHNGE 353 (1760)
Q Consensus 283 ~~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr~--------laHNGE 353 (1760)
++.++|++++++++ ++||+|++.|||+-- |+.+ ++.+.++|||+||||.+..+|.+||||.. +||||+
T Consensus 34 QeaAGI~~~dg~~~~~~K~~GLV~dvF~~~--~~~~-~l~G~~~IGHvRYsTaG~s~~~naQP~~~~~~~g~ialaHNGn 110 (470)
T COG0034 34 QEAAGIAVADGKRFHTHKGMGLVSDVFNER--DLLR-KLQGNVGIGHVRYSTAGSSSIENAQPFYVNSPGGGIALAHNGN 110 (470)
T ss_pred cccccEEEEcCceEEEEecCccchhhcCch--hhhh-hccCcceeeEeeecCCCCcccccccceEEecCCCcEEEEecCc
Confidence 35689999999987 999999999998753 4433 68889999999999999999999999964 799999
Q ss_pred ccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcC--CCHHHHHHHcCccccccCCC
Q 000266 354 INTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAG--RSLPEAVMMMIPEAWQNDKN 431 (1760)
Q Consensus 354 Int~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g--~sl~eAi~~~iPeaw~~~~~ 431 (1760)
|.|....|+ +|++.+.+ ++++||||+|.|+|. ++. .++.+|+...
T Consensus 111 l~N~~~Lr~-------------------~l~~~g~~-f~t~sDsEvll~l~a---~~~~~~~~~~a~~~~---------- 157 (470)
T COG0034 111 LVNAEELRR-------------------ELEEEGAI-FNTTSDSEVLLHLLA---RELDEDDIFEAVKEV---------- 157 (470)
T ss_pred ccCHHHHHH-------------------HHHhcCce-ecCCccHHHHHHHHH---hhcccccHHHHHHHH----------
Confidence 997655554 45556666 689999999988864 432 4777777754
Q ss_pred CCHHHHHHHHHHHhccCCCCCCcE-EEecCCceEEEccCCCCCCCceEEEEe-CCEEEEEeccccccCCCCcEEEccccC
Q 000266 432 MDPQRKALYEYFSALMEPWDGPAL-ISFTDGRYLGATLDRNGLRPGRFYITH-SGRVIMASEVGVVDIPPEDVLRKGRLN 509 (1760)
Q Consensus 432 m~~e~rafYey~s~lmepwdGPa~-iv~tdG~~igA~lDrnGLRPlr~~~t~-d~~~i~ASE~galdi~~~~vv~kgrl~ 509 (1760)
|+...|+|+ ++++.+.+++ +|||||+||| +++.. |+.|++|||+||||+.+.+++| +|+
T Consensus 158 ---------------~~~v~G~ys~v~~~~~~lia-~RDP~GiRPL-~iG~~~dG~yvvaSEt~Ald~iGa~~vR--dv~ 218 (470)
T COG0034 158 ---------------LRRVKGAYALVALIKDGLIA-VRDPNGIRPL-VLGKLGDGFYVVASETCALDILGAEFVR--DVE 218 (470)
T ss_pred ---------------HhhcCCcEEEEEEECCeEEE-EECCCCCccc-eeeecCCCCEEEEechhhhhcccceEEE--ecC
Confidence 455799985 5567776555 8999999999 67775 5569999999999999999996 999
Q ss_pred CCcEEEEEcCC
Q 000266 510 PGMMLLVDFEK 520 (1760)
Q Consensus 510 PGeml~vd~~~ 520 (1760)
|||+|++..++
T Consensus 219 pGE~v~i~~~~ 229 (470)
T COG0034 219 PGEAVIITIDG 229 (470)
T ss_pred CceEEEEEecC
Confidence 99999965544
|
|
| >TIGR03122 one_C_dehyd_C formylmethanofuran dehydrogenase subunit C | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-28 Score=274.69 Aligned_cols=156 Identities=24% Similarity=0.383 Sum_probs=136.1
Q ss_pred cEEEEecccccCcchhhhhhHHHHHhhccCCCCCccEEEEEecCccchhhhcCCCCcEEEEEecCCchhhcCCCCceEEE
Q 000266 1393 PVYIETPVCNVNRAVGTMLSHEVTKRYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVA 1472 (1760)
Q Consensus 1393 ~~~~~~~i~n~dR~vG~~Ls~~i~~~~g~~gl~~~~i~i~~~G~aGq~~Gaf~~~G~~i~v~G~A~DyvGkgmsGG~IvV 1472 (1760)
.++|+.+..+.+|+ |.+ |+.++ |.|+|++||++|++| +|++|+|+|||+||+|++|+||+|+|
T Consensus 61 ~l~i~g~~~r~~~I-G~~-------------m~~g~--I~v~G~~G~~~G~~M-~gG~I~V~G~ag~~~G~~m~GG~I~V 123 (260)
T TIGR03122 61 RLVIDGDTSRVKRI-GER-------------MSAGE--IVVEGDVGMHVGAEM-KGGKIVVNGNADSWLGCEMKGGEIEV 123 (260)
T ss_pred EEEEECCCccCCee-eCC-------------CCCCE--EEEEccchhHHhccC-CCCEEEEEecCchhhhCcccCCEEEE
Confidence 46666677777874 876 55665 566899999999999 67799999999999999999999999
Q ss_pred eCCCCCCCCCCccccchhhhhccCcccEEEEecccccccccccCCcEEEEcC-CCccccccccCcEEEEeCCCCCcccCC
Q 000266 1473 YPPKGSLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCVRNSGARAVVEG-VGDHGCEYMTGGTVVVLGKTGRNFAAG 1551 (1760)
Q Consensus 1473 ~g~~~~~~~~~~~~i~Gn~~~yGatgG~i~v~G~aGeR~gvr~sG~~iVV~G-~Gd~~~eyMtgG~ivVlG~~G~~~gag 1551 (1760)
+||++. ...+.+.|+ ..||+||+|+|+||||+|+|.+|+||+|+|+| +|||+|+||.||+|+|+|++|.++|++
T Consensus 124 ~GnAg~---~~G~~~~G~--~~gM~GG~I~V~GnaG~~~G~~M~gG~iiV~G~aG~~~G~~M~gG~ivV~G~~g~~~g~~ 198 (260)
T TIGR03122 124 KGNAGD---YVGSAYRGE--WRGMSGGKIIVEGNAGDYLGERMRGGEILIEGNAGIFAGIHMNGGTIIIDGDVGRRPGGE 198 (260)
T ss_pred ECCCcc---cccceeecc--cccccCCEEEEEechhHhhhhhccCcEEEEeeecccceeccccCCEEEEecccCcccccC
Confidence 999763 334444565 46999999999999999999999999999999 799999999999999999999999999
Q ss_pred CcceEEEEEcCCchhhccc
Q 000266 1552 MSGGIAYVLDVDGKFRSRC 1570 (1760)
Q Consensus 1552 M~gG~iyv~~~~~~~~~~~ 1570 (1760)
|.+|+|||+++...+...+
T Consensus 199 M~~GtI~v~g~~~~~~p~F 217 (260)
T TIGR03122 199 MKRGTIVVGGKPDELLPSF 217 (260)
T ss_pred CcceEEEEeCCccccCCCc
Confidence 9999999999988765544
|
Members of this largely archaeal protein family are subunit C of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdC) from molybdenum-containing (FmdC) forms of this enzyme. |
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-27 Score=278.61 Aligned_cols=317 Identities=16% Similarity=0.154 Sum_probs=222.0
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHhhcc----cCcccccccccccCCCCCCCCCCCCcccccc-----ceEecCCCcccC
Q 000266 952 IAKLQEAARGN-SVAAYKEYSKRIQELN----KTCNLRGLLKFKEADVKIPLEEVEPASEIVK-----RFCTGAMSYGSI 1021 (1760)
Q Consensus 952 i~~lq~a~r~~-~~~~~~~~~~~~~~~~----~~~~~r~ll~~~~~~~~i~~~eVe~~t~i~~-----Pf~i~aMS~Gsl 1021 (1760)
+.-+++++|.. +...|.||...++++. |...+..+. |+ ||...+++++|++|+|++ ||+++||++..+
T Consensus 6 i~D~~~~Ar~~Lp~~~~~Y~~gga~de~t~~~N~~af~~~~-l~-PR~L~dv~~~d~~t~llG~~~~~Pi~iAP~g~~~l 83 (381)
T PRK11197 6 ASDYRAAAQRRLPPFLFHYIDGGAYAEYTLRRNVEDLADIA-LR-QRVLKDMSDLSLETTLFGEKLSMPVALAPVGLTGM 83 (381)
T ss_pred HHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcc-ee-cccccCCCCCCCceEECCcccccchhhChHHHhhc
Confidence 56677777766 8999999999887764 556677766 77 889999999999999997 999999999886
Q ss_pred -cHHHHHHHHHHHHHcCCc-eeccCCCCCccccCcCCCCCCchhhhheeecccC-CcCCChhhhcCchhH-----HHhhh
Q 000266 1022 -SLEAHTTLATAMNKIGGK-SNTGEGGEQPSRMEPLSDGSMNPKRSAIKQVASG-RFGVSSYYLTNADEL-----QIKMA 1093 (1760)
Q Consensus 1022 -s~ea~~aLA~Aa~~~G~~-s~sGeGge~~e~~~~~~~g~~~~~~s~IkQvasg-rFGVt~~~L~~a~~i-----qIKia 1093 (1760)
.++++.++|+||.++|+. +.|+....+.|++....++ ..++|++-. ...++...+..|++. -+.+.
T Consensus 84 ~hp~gE~~~AraA~~~g~~~~lSt~ss~slEeia~~~~~------~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTVD 157 (381)
T PRK11197 84 YARRGEVQAARAADAKGIPFTLSTVSVCPIEEVAPAIKR------PMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVD 157 (381)
T ss_pred cCCchHHHHHHHHHHcCCCEEeeCCCcCCHHHHHhccCC------CeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 588999999999999995 5567777888888643222 356776422 223333344333221 11111
Q ss_pred ccCCCCCC------C-CCCCccchH---------HHHH--HhCCCCc-----ccccCCCCCCCC-----------CCHHH
Q 000266 1094 QGAKPGEG------G-ELPGHKVIG---------DIAV--TRNSTAG-----VGLISPPPHHDI-----------YSIED 1139 (1760)
Q Consensus 1094 QGAKpGeG------G-~Lpg~KV~~---------~IA~--~R~~~pG-----~~lisP~~hhDi-----------ySied 1139 (1760)
-..+|.. | .+|...... |... .++..+. +.+.++....++ .+|+|
T Consensus 158 -~pv~G~Rerd~rn~~~~p~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~~~~~~g~~~~~~~~~~~~~~~ltW~d 236 (381)
T PRK11197 158 -MPVPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKD 236 (381)
T ss_pred -CCCCCCChhhhhcCCCCCCchhhhHHhhhcCchhhhhhccccCCCcccccccccccccchhHHHHHHHhccCCCCCHHH
Confidence 0001100 0 012100000 0000 1111111 111122222211 24544
Q ss_pred HHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhC
Q 000266 1140 LAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVAN 1219 (1760)
Q Consensus 1140 LaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~ 1219 (1760)
|.+|++.+ +.||+||.|.. ...|..+.++|||+|+||||+|.. .+..+|+...|+++.+.+
T Consensus 237 ----i~~lr~~~-~~pvivKgV~s---~~dA~~a~~~Gvd~I~Vs~hGGr~--------~d~~~~t~~~L~~i~~a~--- 297 (381)
T PRK11197 237 ----LEWIRDFW-DGPMVIKGILD---PEDARDAVRFGADGIVVSNHGGRQ--------LDGVLSSARALPAIADAV--- 297 (381)
T ss_pred ----HHHHHHhC-CCCEEEEecCC---HHHHHHHHhCCCCEEEECCCCCCC--------CCCcccHHHHHHHHHHHh---
Confidence 78888887 88999998743 467888999999999999995542 233467889999998763
Q ss_pred CCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcCCCHHHHHHHH
Q 000266 1220 DLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFF 1299 (1760)
Q Consensus 1220 glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g~~e~V~n~~ 1299 (1760)
..+++|++||||++|.||+||++|||++|++|+++|+++++ ++.++|.+++
T Consensus 298 --~~~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l~~la~---------------------------~G~~gv~~~l 348 (381)
T PRK11197 298 --KGDITILADSGIRNGLDVVRMIALGADTVLLGRAFVYALAA---------------------------AGQAGVANLL 348 (381)
T ss_pred --cCCCeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHHHHHHh---------------------------ccHHHHHHHH
Confidence 34799999999999999999999999999999999999864 3699999999
Q ss_pred HHHHHHHHHHHHhcCCCChhhhcCCCc
Q 000266 1300 FMLAEELREIMSQLGFRTITEMIGRSD 1326 (1760)
Q Consensus 1300 ~~l~~ELr~~Ma~lG~~si~ELigr~d 1326 (1760)
+.+.+||+..|+++|+++++|| .+..
T Consensus 349 ~~l~~El~~~m~l~G~~~i~el-~~~~ 374 (381)
T PRK11197 349 DLIEKEMRVAMTLTGAKSISEI-TRDS 374 (381)
T ss_pred HHHHHHHHHHHHHHCCCCHHHh-CHhh
Confidence 9999999999999999999997 5443
|
|
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-27 Score=279.67 Aligned_cols=313 Identities=17% Similarity=0.123 Sum_probs=220.7
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHhhcc----cCcccccccccccCCCCCCCCCCCCcccccc-----ceEecCCCccc
Q 000266 951 AIAKLQEAARGN-SVAAYKEYSKRIQELN----KTCNLRGLLKFKEADVKIPLEEVEPASEIVK-----RFCTGAMSYGS 1020 (1760)
Q Consensus 951 ~i~~lq~a~r~~-~~~~~~~~~~~~~~~~----~~~~~r~ll~~~~~~~~i~~~eVe~~t~i~~-----Pf~i~aMS~Gs 1020 (1760)
.+.-+.+++|.. +...|.||...++++. |...++.+. |+ ||...+++++|++++|++ ||+++||++..
T Consensus 20 ~i~D~~~~Ar~~lp~~~~~y~~gGa~de~t~~~N~~af~~~~-l~-PRvL~dv~~~dt~t~llG~~~~~P~~iAP~g~~~ 97 (383)
T cd03332 20 DPERLEALAREALSPGAFAYVAGGAGSESTARANRDAFSRWR-IV-PRMLRGVTERDLSVELFGRTLAAPLLLAPIGVQE 97 (383)
T ss_pred CHHHHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhcC-cc-ccccccCCCCCCceeeCCccccccceechHHHHH
Confidence 466777777765 8889999998887763 666777766 77 889999999999999997 99999999987
Q ss_pred C-cHHHHHHHHHHHHHcCCcee-ccCCCCCccccCcC-CCCCCchhhhheeecccC-CcCCChhhhcCchhHH-----Hh
Q 000266 1021 I-SLEAHTTLATAMNKIGGKSN-TGEGGEQPSRMEPL-SDGSMNPKRSAIKQVASG-RFGVSSYYLTNADELQ-----IK 1091 (1760)
Q Consensus 1021 l-s~ea~~aLA~Aa~~~G~~s~-sGeGge~~e~~~~~-~~g~~~~~~s~IkQvasg-rFGVt~~~L~~a~~iq-----IK 1091 (1760)
+ .++++.++|+||.++|+... |..++.+.|++... +++ ..++|++-. ...++...+..|++.- +.
T Consensus 98 l~~p~gE~a~ArAA~~~gi~~~lSt~ss~slEeIa~~~~~~------~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlT 171 (383)
T cd03332 98 LFHPDAELATARAAAELGVPYILSTASSSSIEDVAAAAGDA------PRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVT 171 (383)
T ss_pred hcCCcHHHHHHHHHHHcCCCeeecCCCCCCHHHHHhhcCCC------CcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 6 68999999999999999644 44667888887643 111 357786442 2344444444433221 11
Q ss_pred hhccCCCCC------CCCCCCcc-chH--------HHHHHhCCCCccc------------ccCCCCCCCCCCHHHHHHHH
Q 000266 1092 MAQGAKPGE------GGELPGHK-VIG--------DIAVTRNSTAGVG------------LISPPPHHDIYSIEDLAQLI 1144 (1760)
Q Consensus 1092 iaQGAKpGe------GG~Lpg~K-V~~--------~IA~~R~~~pG~~------------lisP~~hhDiySiedLaqlI 1144 (1760)
+. -.-+|. .+.+|... ... |....+...+... ...-..++. .+|++ |
T Consensus 172 VD-~pv~g~Rerd~r~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~tW~~----i 245 (383)
T cd03332 172 LD-TWSLGWRPRDLDLGYLPFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVSVFSGPS-LTWED----L 245 (383)
T ss_pred CC-CCCCCCchhhhhcCCCCCccccchhhhhccchhhhccccCCCCCcccccccchhHHHHHHhcCCCC-CCHHH----H
Confidence 10 000000 01111000 000 0000000000000 000000111 24554 7
Q ss_pred HHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCc
Q 000266 1145 YDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGR 1224 (1760)
Q Consensus 1145 ~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~r 1224 (1760)
.+|++.+ +.||+||.+. ....|..+.++|+|+|+||||+|+. .+.++|++.+|+++.+++ .++
T Consensus 246 ~~lr~~~-~~pvivKgV~---~~~dA~~a~~~G~d~I~vsnhGGr~--------~d~~~~t~~~L~ei~~~~-----~~~ 308 (383)
T cd03332 246 AFLREWT-DLPIVLKGIL---HPDDARRAVEAGVDGVVVSNHGGRQ--------VDGSIAALDALPEIVEAV-----GDR 308 (383)
T ss_pred HHHHHhc-CCCEEEecCC---CHHHHHHHHHCCCCEEEEcCCCCcC--------CCCCcCHHHHHHHHHHHh-----cCC
Confidence 7788876 7999999763 3467888999999999999997754 356899999999999884 347
Q ss_pred eEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcCCCHHHHHHHHHHHHH
Q 000266 1225 TILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAE 1304 (1760)
Q Consensus 1225 V~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ 1304 (1760)
++|++||||++|.||+||++|||++|++|+++|++++. +++++|.++++.+.+
T Consensus 309 ~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l~~l~~---------------------------~G~~gv~~~l~~l~~ 361 (383)
T cd03332 309 LTVLFDSGVRTGADIMKALALGAKAVLIGRPYAYGLAL---------------------------GGEDGVEHVLRNLLA 361 (383)
T ss_pred CeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHh---------------------------ccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998753 368999999999999
Q ss_pred HHHHHHHhcCCCChhhh
Q 000266 1305 ELREIMSQLGFRTITEM 1321 (1760)
Q Consensus 1305 ELr~~Ma~lG~~si~EL 1321 (1760)
||+..|+++|+++++||
T Consensus 362 El~~~m~l~G~~~i~~l 378 (383)
T cd03332 362 ELDLTMGLAGIRSIAEL 378 (383)
T ss_pred HHHHHHHHHCCCCHHHh
Confidence 99999999999999997
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-27 Score=282.53 Aligned_cols=294 Identities=20% Similarity=0.217 Sum_probs=196.6
Q ss_pred CHHHHHHHHHHHhhcc----cCcccccccccccCCCCCCCCCCCCcccccc-----ceEecCCCcccC-cHHHHHHHHHH
Q 000266 963 SVAAYKEYSKRIQELN----KTCNLRGLLKFKEADVKIPLEEVEPASEIVK-----RFCTGAMSYGSI-SLEAHTTLATA 1032 (1760)
Q Consensus 963 ~~~~~~~~~~~~~~~~----~~~~~r~ll~~~~~~~~i~~~eVe~~t~i~~-----Pf~i~aMS~Gsl-s~ea~~aLA~A 1032 (1760)
+...|.+|...+.++. |...|..+. |+ ++...+++++|++++|++ ||+++||+++.+ .++++.++|+|
T Consensus 6 p~~~~~yi~gga~~e~t~~~N~~af~~i~-l~-prvL~dv~~~D~st~~lG~~~s~P~~iaP~~~~~l~~~~ge~~lAra 83 (356)
T PF01070_consen 6 PPRVFDYIDGGAGDEVTFRRNREAFDRIR-LR-PRVLRDVSDPDTSTTFLGQKLSMPFFIAPMGGGGLAHPDGERALARA 83 (356)
T ss_dssp -HHHHHHHHHHSTTTHHHHHHHHGGGGEE-E----SSSBGSS-BSSEEETTEEESSSEEEEEESTGGGTSTTHHHHHHHH
T ss_pred CHHHHHHHHHcCCCcHHHHHHHHHHHHhc-cc-ccccCCcccCCCCeeeCCccCCCCeEEcchhhhhhhccchHHHHHHH
Confidence 6678999988887663 555677765 76 778899999999999997 999999998876 58899999999
Q ss_pred HHHcCCceeccCCC-CCccccCcCCCCCCchhhhheeecccCC-cCCChhhhcCchhH-----HHhh-------------
Q 000266 1033 MNKIGGKSNTGEGG-EQPSRMEPLSDGSMNPKRSAIKQVASGR-FGVSSYYLTNADEL-----QIKM------------- 1092 (1760)
Q Consensus 1033 a~~~G~~s~sGeGg-e~~e~~~~~~~g~~~~~~s~IkQvasgr-FGVt~~~L~~a~~i-----qIKi------------- 1092 (1760)
|.++|+...+|.++ .+.|++..... ...+.|++..+ -..+.+.+..+++. .|.+
T Consensus 84 A~~~Gi~~~lss~s~~~~e~ia~~~~------~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r 157 (356)
T PF01070_consen 84 AAKAGIPMMLSSQSSASLEEIAAASG------GPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLR 157 (356)
T ss_dssp HHHHTSEEEEETTCSSCHHHHHHHCT------SEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHH
T ss_pred HhccCcceeccCCccCCHHHHHhhcc------CCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccc
Confidence 99999988877764 45555432111 13466664331 11122222222211 1111
Q ss_pred --------------hccC-CCCCCCCCCCccchHHHHHHhCCCCcc------cccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 000266 1093 --------------AQGA-KPGEGGELPGHKVIGDIAVTRNSTAGV------GLISPPPHHDIYSIEDLAQLIYDLKNAN 1151 (1760)
Q Consensus 1093 --------------aQGA-KpGeGG~Lpg~KV~~~IA~~R~~~pG~------~lisP~~hhDiySiedLaqlI~~Lk~~~ 1151 (1760)
.+++ +|..+. ..+........+. .......+++ .+|++ |.++++.+
T Consensus 158 ~g~~~p~~~~~~~~~~~~~~p~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~w~~----i~~~~~~~ 224 (356)
T PF01070_consen 158 NGFSVPPKLSPRNLLDGASHPRSGM--------PRLENNEAPPPGDNGAAAARFVGSQFDPS-LTWDD----IEWIRKQW 224 (356)
T ss_dssp HTCCCSTTHCTTCGTTTTTTT-TTT--------GG-----CSSSSTSTCHHHHHHHCHB-TT--SHHH----HHHHHHHC
T ss_pred cccCCCcccccccccccccCccccc--------ccccccccccCCCcchhHHHHHHHhcCCC-CCHHH----HHHHhccc
Confidence 0111 111000 0000000000000 0111111223 23443 78888886
Q ss_pred CCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcC
Q 000266 1152 PGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDG 1231 (1760)
Q Consensus 1152 p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadG 1231 (1760)
+.||+||.|.. ...|..+.++|+|+|+||||+| |. .+||+|+..+|+++++++ .++++||+||
T Consensus 225 -~~pvivKgv~~---~~da~~~~~~G~~~i~vs~hGG-r~-------~d~~~~~~~~L~~i~~~~-----~~~~~i~~dg 287 (356)
T PF01070_consen 225 -KLPVIVKGVLS---PEDAKRAVDAGVDGIDVSNHGG-RQ-------LDWGPPTIDALPEIRAAV-----GDDIPIIADG 287 (356)
T ss_dssp -SSEEEEEEE-S---HHHHHHHHHTT-SEEEEESGTG-TS-------STTS-BHHHHHHHHHHHH-----TTSSEEEEES
T ss_pred -CCceEEEeccc---HHHHHHHHhcCCCEEEecCCCc-cc-------CccccccccccHHHHhhh-----cCCeeEEEeC
Confidence 99999999743 3677889999999999999944 42 579999999999999985 3589999999
Q ss_pred CcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 000266 1232 QLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMS 1311 (1760)
Q Consensus 1232 GIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma 1311 (1760)
|||+|.||+||++|||++|++|+++|+++... ++++|.++++.+.+||+..|+
T Consensus 288 Gir~g~Dv~kalaLGA~~v~igr~~l~~l~~~---------------------------g~~gv~~~~~~l~~el~~~m~ 340 (356)
T PF01070_consen 288 GIRRGLDVAKALALGADAVGIGRPFLYALAAG---------------------------GEEGVERVLEILKEELKRAMF 340 (356)
T ss_dssp S--SHHHHHHHHHTT-SEEEESHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCeEEEccHHHHHHHHh---------------------------hHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988543 589999999999999999999
Q ss_pred hcCCCChhhh
Q 000266 1312 QLGFRTITEM 1321 (1760)
Q Consensus 1312 ~lG~~si~EL 1321 (1760)
++|+++++||
T Consensus 341 l~G~~~~~~l 350 (356)
T PF01070_consen 341 LLGARSIAEL 350 (356)
T ss_dssp HHT-SBGGGH
T ss_pred HHCCCCHHHh
Confidence 9999999998
|
These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A .... |
| >PRK07349 amidophosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-26 Score=284.35 Aligned_cols=188 Identities=24% Similarity=0.214 Sum_probs=155.3
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCce--------eeeccccc
Q 000266 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMR--------ILGHNGEI 354 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr--------~laHNGEI 354 (1760)
+.++|+++++..+ ++|++|++.++++.. +| +.++++++|||+||||++.++|.++|||. .++|||||
T Consensus 63 dsaGIa~~~~~~~~~~K~~Glv~~vf~~~--~l--~~l~G~i~IGHvRysT~G~~~~~naQP~~~~~~~g~ialvhNG~I 138 (500)
T PRK07349 63 ESAGIATFEGDKVHLHKDMGLVSQVFDED--IL--EELPGDLAVGHTRYSTTGSSRKANAQPAVLETRLGPLALAHNGNL 138 (500)
T ss_pred CcceEEEEeCCEEEEEecCcchhhhcchh--hh--hcCCCCEEEEEeecccCCCCCccCCCCeEeecCCCCEEEEEEEEE
Confidence 5689999888776 999999999997643 33 67899999999999999999999999996 37999999
Q ss_pred cChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCH
Q 000266 355 NTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDP 434 (1760)
Q Consensus 355 nt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~ 434 (1760)
+|+...++.+. +.+.+ +.+.||||++.++++.....+.++.+|+..+
T Consensus 139 ~N~~eLr~~L~-------------------~~G~~-f~s~sDtEVi~~li~~~~~~~~~~~eai~~~------------- 185 (500)
T PRK07349 139 VNTVELREELL-------------------ARGCE-LTTTTDSEMIAFAIAQAVDAGKDWLEAAISA------------- 185 (500)
T ss_pred eCHHHHHHHHH-------------------hCCCc-CCCCCHHHHHHHHHHHHHhcCCCHHHHHHHH-------------
Confidence 98887776543 33433 5899999999999986656667888888755
Q ss_pred HHHHHHHHHHhccCCCCCCcEEEecCCceEEEccCCCCCCCceEEEEe----CCEEEEEeccccccCCCCcEEEccccCC
Q 000266 435 QRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITH----SGRVIMASEVGVVDIPPEDVLRKGRLNP 510 (1760)
Q Consensus 435 e~rafYey~s~lmepwdGPa~iv~tdG~~igA~lDrnGLRPlr~~~t~----d~~~i~ASE~galdi~~~~vv~kgrl~P 510 (1760)
++.++|.|++++.+++.+.|+|||+|+||| |++.. ++.|++|||+++++..+.+.++ +|+|
T Consensus 186 ------------~~~l~G~ya~vi~~~~~l~aaRDp~GiRPL-~~G~~~~~~~~~~~~ASE~~Al~~lg~~~ir--~v~P 250 (500)
T PRK07349 186 ------------FQRCQGAFSLVIGTPEGLMGVRDPNGIRPL-VIGTLGEGGPGRYVLASETCALDIIGAEYLR--DVEP 250 (500)
T ss_pred ------------HHHhhhhEEEEEEeCCEEEEEECCCCCCCe-EEEecccCCCCeEEEEeccchhhhcCCceEE--EeCC
Confidence 345799998888887777889999999999 78765 4589999999999988788885 8999
Q ss_pred CcEEEEEcCCCEE
Q 000266 511 GMMLLVDFEKRIV 523 (1760)
Q Consensus 511 Geml~vd~~~g~i 523 (1760)
||++.|+.++-++
T Consensus 251 Geiv~i~~~g~~~ 263 (500)
T PRK07349 251 GELVWITEGGLSS 263 (500)
T ss_pred CeEEEEECCceEE
Confidence 9999998654343
|
|
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-26 Score=269.42 Aligned_cols=274 Identities=23% Similarity=0.271 Sum_probs=204.1
Q ss_pred ccCCCCCCCCCCCCcccccc-----ceEecCCCccc-CcHHHHHHHHHHHHHcCCceeccCCC---CCccccCcCCCCCC
Q 000266 990 KEADVKIPLEEVEPASEIVK-----RFCTGAMSYGS-ISLEAHTTLATAMNKIGGKSNTGEGG---EQPSRMEPLSDGSM 1060 (1760)
Q Consensus 990 ~~~~~~i~~~eVe~~t~i~~-----Pf~i~aMS~Gs-ls~ea~~aLA~Aa~~~G~~s~sGeGg---e~~e~~~~~~~g~~ 1060 (1760)
..+.|.+++++||++++|++ ||+++||++|+ .+.+.+.+||++|+++|+.+.+|+++ ++|+..
T Consensus 30 ~~~lp~~~~~~~d~s~~~~g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~~~~-------- 101 (333)
T TIGR02151 30 HNALPEINLDDIDLTTEFLGKRLKAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVGSQRAALKDPETA-------- 101 (333)
T ss_pred cCCCCCCCcccCCCceEECCccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEcCchhhccChhhH--------
Confidence 34678999999999999985 99999999887 57788999999999999999999875 344422
Q ss_pred chhhhheeecccC-CcCCChh--hhcC--chhHH--HhhhccCCCCCCCCCCCccchHHHHHHhCCCCcccccCCCCCCC
Q 000266 1061 NPKRSAIKQVASG-RFGVSSY--YLTN--ADELQ--IKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHHD 1133 (1760)
Q Consensus 1061 ~~~~s~IkQvasg-rFGVt~~--~L~~--a~~iq--IKiaQGAKpGeGG~Lpg~KV~~~IA~~R~~~pG~~lisP~~hhD 1133 (1760)
+.. ..+++.++. +|.++.. .+.. .+.++ +.+.+ | -|...|.++.+++++|.++.|
T Consensus 102 ~~~-~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~-a----------------dal~i~ln~~q~~~~p~g~~~ 163 (333)
T TIGR02151 102 DTF-EVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIE-A----------------DALAIHLNVLQELVQPEGDRN 163 (333)
T ss_pred hHH-HHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhc-C----------------CCEEEcCcccccccCCCCCcC
Confidence 112 445664433 3322211 0000 00010 11110 0 022236677888899998887
Q ss_pred CCCHHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCcc-----------ccccccC
Q 000266 1134 IYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRW-----------TGIKNAG 1202 (1760)
Q Consensus 1134 iySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~-----------~si~~~G 1202 (1760)
| +.+.+.|.++++.. +.||+||.+...-....|..+.++|+|+|+|+|+ |||.+... ....+||
T Consensus 164 f---~~~le~i~~i~~~~-~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~-gGt~~~~ie~~r~~~~~~~~~~~~~g 238 (333)
T TIGR02151 164 F---KGWLEKIAEICSQL-SVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGA-GGTSWAQVENYRAKGSNLASFFNDWG 238 (333)
T ss_pred H---HHHHHHHHHHHHhc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCC-CCCcccchhhhcccccccchhhhccc
Confidence 5 56778888898876 7999999874322345678899999999999997 56765532 2346789
Q ss_pred CCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccCh
Q 000266 1203 LPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDP 1282 (1760)
Q Consensus 1203 lP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp 1282 (1760)
+|+...|.++.+ +..++|||++|||+|+.||+|++++|||+|++|+++|.++
T Consensus 239 ~~t~~~l~~~~~------~~~~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~~~---------------------- 290 (333)
T TIGR02151 239 IPTAASLLEVRS------DAPDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLKAA---------------------- 290 (333)
T ss_pred HhHHHHHHHHHh------cCCCCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHHHH----------------------
Confidence 999888888865 1246999999999999999999999999999999999864
Q ss_pred hhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCcee
Q 000266 1283 VLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDML 1328 (1760)
Q Consensus 1283 ~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~dLl 1328 (1760)
+..++++|.+++..+.+||+.+|..+|++|++|| .+.+++
T Consensus 291 -----~~~g~~~v~~~i~~~~~eL~~~m~~~G~~~i~el-~~~~~~ 330 (333)
T TIGR02151 291 -----LDEGEEAVIEEIELIIEELKVAMFLTGAKTIAEL-KKVPLV 330 (333)
T ss_pred -----HhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH-ccCCeE
Confidence 2357999999999999999999999999999998 445543
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-26 Score=272.23 Aligned_cols=307 Identities=18% Similarity=0.152 Sum_probs=212.0
Q ss_pred HHHHHhcC-CHHHHHHHHHHHhhcc----cCcccccccccccCCCCCCCCCCCCcccccc-----ceEecCCCcccC-cH
Q 000266 955 LQEAARGN-SVAAYKEYSKRIQELN----KTCNLRGLLKFKEADVKIPLEEVEPASEIVK-----RFCTGAMSYGSI-SL 1023 (1760)
Q Consensus 955 lq~a~r~~-~~~~~~~~~~~~~~~~----~~~~~r~ll~~~~~~~~i~~~eVe~~t~i~~-----Pf~i~aMS~Gsl-s~ 1023 (1760)
|.+++|.. +...|.||...+.++. |...+..+. |+ ++...+++++|+++++++ ||+++||++-.+ .+
T Consensus 3 ~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~af~~~~-l~-pr~L~dv~~~d~~~~~lG~~~~~Pi~iaP~~~~~~~~~ 80 (344)
T cd02922 3 FEAAAKKYLSKKAWAYYSSGADDEITLRENLEAFQRIR-FR-PRVLRDVEKVDTSTTILGHKVSLPFFISPAALAKLAHP 80 (344)
T ss_pred HHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhCc-ee-ccccCCCCCCCCceEECCcccCCceeeChHHHhhhCCc
Confidence 44555544 7888999988777653 555566655 66 778889999999999996 999999998775 58
Q ss_pred HHHHHHHHHHHHcCCceeccCC-CCCccccCcCCCCCCchhhhheeecccCC-cCCChhhhcCchhH-----HHhhhccC
Q 000266 1024 EAHTTLATAMNKIGGKSNTGEG-GEQPSRMEPLSDGSMNPKRSAIKQVASGR-FGVSSYYLTNADEL-----QIKMAQGA 1096 (1760)
Q Consensus 1024 ea~~aLA~Aa~~~G~~s~sGeG-ge~~e~~~~~~~g~~~~~~s~IkQvasgr-FGVt~~~L~~a~~i-----qIKiaQGA 1096 (1760)
+++.++|+||.++|+.+..+.. ..+.|++.....+ + ...+.|++..+ ...+.+.+..+++. -|.+.
T Consensus 81 ~ge~~~AraA~~~gi~~~lss~s~~s~e~v~~~~~~--~--~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD--- 153 (344)
T cd02922 81 DGELNLARAAGKHGILQMISTNASCSLEEIVDARPP--D--QPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVD--- 153 (344)
T ss_pred hHHHHHHHHHHHcCCCEEecCcccCCHHHHHHhcCC--C--CcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECC---
Confidence 8999999999999998776655 4566664322110 0 13568875432 22333334333322 12221
Q ss_pred CCCCCCCCCCccchHHHHHHhC--CCCcccccCCC---------CCCC---CCCHHHHHHHHHHHHHhCCCCceEEEEcc
Q 000266 1097 KPGEGGELPGHKVIGDIAVTRN--STAGVGLISPP---------PHHD---IYSIEDLAQLIYDLKNANPGARISVKLVS 1162 (1760)
Q Consensus 1097 KpGeGG~Lpg~KV~~~IA~~R~--~~pG~~lisP~---------~hhD---iySiedLaqlI~~Lk~~~p~~pV~VKlv~ 1162 (1760)
-|..| . .+ ..+|. ..|- .+..|. .... ........+.|.+|++.+ +.||+||.+
T Consensus 154 ~p~~g-----~--r~--~d~r~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~PvivKgv- 221 (344)
T cd02922 154 APVLG-----K--RE--RDERLKAEEAV-SDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHT-KLPIVLKGV- 221 (344)
T ss_pred CCCcC-----c--ch--hhhhhcCCcCc-cccccccccccccchHHHHHhhccCCCCCHHHHHHHHHhc-CCcEEEEcC-
Confidence 01000 0 00 00110 0000 000000 0000 000011134488888876 899999975
Q ss_pred ccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHH
Q 000266 1163 EAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIA 1242 (1760)
Q Consensus 1163 ~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKA 1242 (1760)
+....|..+.++|+|+|+||||+|.. ++ ...|+..+|+++++.+...+ ++++||+||||++|.||+||
T Consensus 222 --~~~~dA~~a~~~G~d~I~vsnhgG~~-------~d-~~~~~~~~L~~i~~~~~~~~--~~~~vi~~GGIr~G~Dv~ka 289 (344)
T cd02922 222 --QTVEDAVLAAEYGVDGIVLSNHGGRQ-------LD-TAPAPIEVLLEIRKHCPEVF--DKIEVYVDGGVRRGTDVLKA 289 (344)
T ss_pred --CCHHHHHHHHHcCCCEEEEECCCccc-------CC-CCCCHHHHHHHHHHHHHHhC--CCceEEEeCCCCCHHHHHHH
Confidence 45678888999999999999996442 33 45678889999999776543 47999999999999999999
Q ss_pred HHcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhh
Q 000266 1243 ALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEM 1321 (1760)
Q Consensus 1243 laLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~EL 1321 (1760)
++|||++|++||++|++++|. ++++|.++++.+.+||+.+|+++|+++++||
T Consensus 290 laLGA~aV~iG~~~l~~l~~~---------------------------G~~gv~~~l~~l~~EL~~~m~l~G~~~i~~l 341 (344)
T cd02922 290 LCLGAKAVGLGRPFLYALSAY---------------------------GEEGVEKAIQILKDEIETTMRLLGVTSLDQL 341 (344)
T ss_pred HHcCCCEEEECHHHHHHHhhc---------------------------cHHHHHHHHHHHHHHHHHHHHHhCCCCHHHh
Confidence 999999999999999998763 5899999999999999999999999999997
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.4e-26 Score=269.13 Aligned_cols=320 Identities=15% Similarity=0.154 Sum_probs=221.5
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHhhcc----cCcccccccccccCCCCCCCCCCCCcccccc-----ceEecCCCc
Q 000266 949 PLAIAKLQEAARGN-SVAAYKEYSKRIQELN----KTCNLRGLLKFKEADVKIPLEEVEPASEIVK-----RFCTGAMSY 1018 (1760)
Q Consensus 949 P~~i~~lq~a~r~~-~~~~~~~~~~~~~~~~----~~~~~r~ll~~~~~~~~i~~~eVe~~t~i~~-----Pf~i~aMS~ 1018 (1760)
...+.-|.+++|.. +...|.+|...++++. |...++.+. |+ ||...+++++|+++++++ ||+++||++
T Consensus 13 ~~~i~D~~~~A~~~lp~~~~~y~~~ga~de~t~~~N~~af~~~~-l~-PR~L~dv~~~d~~t~llG~~~~~Pv~iaP~g~ 90 (367)
T TIGR02708 13 FINTYDLEEMAQQVIPKGAFGYIASGAGDTFTLRENIRAFNHKL-IV-PHLLQDVENPSTEIEFLGHKLKSPFIMAPVAA 90 (367)
T ss_pred CCCHHHHHHHHHHhCCHHHHHHHhcCCchHHHHHHHHHHHHhcC-ee-cccccCCCCCCCceeeCCcccccccccCcHHH
Confidence 33467887777766 8999999999887764 556677765 77 889999999999999997 999999999
Q ss_pred ccC-cHHHHHHHHHHHHHcCCc-eeccCCCCCccccCcCCCCCCchhhhheeecccC-CcCCChhhhcCchhH-----HH
Q 000266 1019 GSI-SLEAHTTLATAMNKIGGK-SNTGEGGEQPSRMEPLSDGSMNPKRSAIKQVASG-RFGVSSYYLTNADEL-----QI 1090 (1760)
Q Consensus 1019 Gsl-s~ea~~aLA~Aa~~~G~~-s~sGeGge~~e~~~~~~~g~~~~~~s~IkQvasg-rFGVt~~~L~~a~~i-----qI 1090 (1760)
..+ .++++.++|+||.++|+. +.|..+..+.|++.....+ ...++|++-. .-.++...+..++.. -+
T Consensus 91 ~~l~~p~gE~~~ArAA~~~g~~~~lSt~ss~slEev~~~~~~-----~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvl 165 (367)
T TIGR02708 91 HKLANEQGEVATARGVSEFGSIYTTSSYSTADLPEISEALNG-----TPHWFQFYMSKDDGINRDIMDRVKADGAKAIVL 165 (367)
T ss_pred hhccCCcHHHHHHHHHHHcCCCeeecccccCCHHHHHhhcCC-----CceEEEEeccCCHHHHHHHHHHHHHcCCCEEEE
Confidence 876 589999999999999996 4445556788877533111 1357776432 223444444433221 11
Q ss_pred hhhccCCCCC-------CCCCCCccchHHHHHHhCCCCc-ccccCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEcc
Q 000266 1091 KMAQGAKPGE-------GGELPGHKVIGDIAVTRNSTAG-VGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVS 1162 (1760)
Q Consensus 1091 KiaQGAKpGe-------GG~Lpg~KV~~~IA~~R~~~pG-~~lisP~~hhDiySiedLaqlI~~Lk~~~p~~pV~VKlv~ 1162 (1760)
.+. -..+|. +-.+|. +...+...+.+.... ...+.....+ -.+|++ |.+|++.+ +.||+||.+
T Consensus 166 TvD-~p~~g~R~~d~r~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~w~~----i~~l~~~~-~~PvivKGv- 236 (367)
T TIGR02708 166 TAD-ATVGGNREVDVRNGFVFPV-GMPIVQEYLPTGAGKSMDNVYKSAKQ-KLSPRD----IEEIAGYS-GLPVYVKGP- 236 (367)
T ss_pred ecC-CCCCCcchhhhhcCCCCCC-ccchhhhhcccCCccchhhhccccCC-CCCHHH----HHHHHHhc-CCCEEEeCC-
Confidence 110 000000 001110 110001111110000 0000000111 134544 77788876 799999964
Q ss_pred ccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHH
Q 000266 1163 EAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIA 1242 (1760)
Q Consensus 1163 ~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKA 1242 (1760)
+....|..+.++|+|+|+||||+|.. .+.+.+....|+++.++ +.++++||+||||++|.||+||
T Consensus 237 --~~~eda~~a~~~Gvd~I~VS~HGGrq--------~~~~~a~~~~L~ei~~a-----v~~~i~vi~dGGIr~g~Dv~Ka 301 (367)
T TIGR02708 237 --QCPEDADRALKAGASGIWVTNHGGRQ--------LDGGPAAFDSLQEVAEA-----VDKRVPIVFDSGVRRGQHVFKA 301 (367)
T ss_pred --CCHHHHHHHHHcCcCEEEECCcCccC--------CCCCCcHHHHHHHHHHH-----hCCCCcEEeeCCcCCHHHHHHH
Confidence 44678889999999999999997643 23455667889999886 3457999999999999999999
Q ss_pred HHcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhc
Q 000266 1243 ALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMI 1322 (1760)
Q Consensus 1243 laLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELi 1322 (1760)
++|||++|++|+++|+++++ +++++|.++++.+.+||+..|+++|+++++||
T Consensus 302 LalGAd~V~igR~~l~~la~---------------------------~G~~gv~~~l~~l~~El~~~M~l~G~~~i~eL- 353 (367)
T TIGR02708 302 LASGADLVALGRPVIYGLAL---------------------------GGSQGARQVFEYLNKELKRVMQLTGTQTIEDV- 353 (367)
T ss_pred HHcCCCEEEEcHHHHHHHHh---------------------------cCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHh-
Confidence 99999999999999998754 36899999999999999999999999999997
Q ss_pred CCCce
Q 000266 1323 GRSDM 1327 (1760)
Q Consensus 1323 gr~dL 1327 (1760)
.+..+
T Consensus 354 ~~~~l 358 (367)
T TIGR02708 354 KGFDL 358 (367)
T ss_pred Ccccc
Confidence 55544
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >PRK07847 amidophosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-26 Score=283.21 Aligned_cols=192 Identities=22% Similarity=0.270 Sum_probs=153.4
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCce---------eeecccc
Q 000266 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMR---------ILGHNGE 353 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr---------~laHNGE 353 (1760)
+.++|++++++.+ +||++|++.+|++.. ..+.+.++++|+|+||||++.++|.++|||. .++||||
T Consensus 53 dsaGIa~~d~~~i~~~K~~Glv~~vf~d~----~l~~l~G~i~IGHvR~sT~G~~~~~naQP~~~~~~~~g~ialvHNG~ 128 (510)
T PRK07847 53 EAAGIAVSDGSQILVFKDLGLVSQVFDEQ----TLASLQGHVAIGHCRYSTTGASTWENAQPTFRATAAGGGVALGHNGN 128 (510)
T ss_pred CcccEEEEeCCEEEEEecCccHHHhhchh----hhhhcCCcEEEEeccCCcCCCCcccCCCCcCcccCCCCCEEEEEEEE
Confidence 4688999887666 999999999997542 2368899999999999999999999999995 3799999
Q ss_pred ccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCC
Q 000266 354 INTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMD 433 (1760)
Q Consensus 354 Int~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~ 433 (1760)
|+|+...++.+..+.. .|+ +.-+++.||||+|.++++.....+ ++.+|+..++
T Consensus 129 I~N~~eLr~~L~~~G~-----~~~----------~~~f~s~sDSEVI~~Li~~~~~~~-~~~eai~~~~----------- 181 (510)
T PRK07847 129 LVNTAELAARARDRGL-----IRG----------RDPAGATTDTDLVTALLAHGAADS-TLEQAALELL----------- 181 (510)
T ss_pred EeCHHHHHHHHHhcCC-----ccc----------cCCCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHH-----------
Confidence 9998877765542210 011 113578999999999887543222 7888887653
Q ss_pred HHHHHHHHHHHhccCCCCCCcEEEecCCceEEEccCCCCCCCceEEEEeCCEEEEEeccccccCCCCcEEEccccCCCcE
Q 000266 434 PQRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMM 513 (1760)
Q Consensus 434 ~e~rafYey~s~lmepwdGPa~iv~tdG~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~galdi~~~~vv~kgrl~PGem 513 (1760)
+.++|+|++++.|++.+.|+||++|+||| |++..++.+++|||.++++..+.+.++ +|+|||+
T Consensus 182 --------------~~l~G~yA~vi~d~~~L~aaRDp~GirPL-~~g~~~~~~~vASE~~AL~~~g~~~ir--~v~PGei 244 (510)
T PRK07847 182 --------------PTVRGAFCLVFMDEHTLYAARDPQGVRPL-VLGRLERGWVVASETAALDIVGASFVR--EIEPGEL 244 (510)
T ss_pred --------------HHhhhheEEEEEECCEEEEEECCCCCCCc-EEEEECCeEEEEechHHHhccCCcEEE--EECcCEE
Confidence 45699999998888888889999999999 788878889999999999977666775 9999999
Q ss_pred EEEEcCCCEE
Q 000266 514 LLVDFEKRIV 523 (1760)
Q Consensus 514 l~vd~~~g~i 523 (1760)
+.|+.++-++
T Consensus 245 v~I~~~gv~~ 254 (510)
T PRK07847 245 IAIDADGLRS 254 (510)
T ss_pred EEEECCceEE
Confidence 9998755343
|
|
| >PRK07272 amidophosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-26 Score=279.32 Aligned_cols=186 Identities=22% Similarity=0.200 Sum_probs=148.8
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCcee--------eeccccc
Q 000266 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRI--------LGHNGEI 354 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr~--------laHNGEI 354 (1760)
+.++|++.+++.+ ++|++|++.++++-.. +| +.+.++++|||+||||++.++|.++|||.. ++|||||
T Consensus 40 dsaGIa~~d~~~i~~~K~~Glv~~vf~~~~-~l--~~l~G~~~IGH~RysT~G~~~~~naqP~~~~~~~g~ialvhNG~I 116 (484)
T PRK07272 40 EGAGIVSNDNGKLKGHRDLGLLSEVFKDPA-DL--DKLTGQAAIGHVRYATAGSASIENIQPFLFHFHDMQFGLAHNGNL 116 (484)
T ss_pred ccceEEEEeCCeeEEEecCCcccchhcchh-hH--hcCCCcEEEEEeeccccCCCCcCCCCCEEeecCCCCEEEEEEEEE
Confidence 5689999888777 9999999999976422 33 568899999999999999999999999953 7999999
Q ss_pred cChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCH
Q 000266 355 NTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDP 434 (1760)
Q Consensus 355 nt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~ 434 (1760)
+|+...++.+. +.+. .+.+.||||++.++++... ..++.+|+..+
T Consensus 117 ~N~~eLr~~L~-------------------~~G~-~f~s~sDtEVI~~Li~~~~--~~~~~eai~~~------------- 161 (484)
T PRK07272 117 TNAVSLRKELE-------------------KQGA-IFHSSSDTEILMHLIRRSH--NPTFMGKLKEA------------- 161 (484)
T ss_pred eCHHHHHHHHH-------------------hCCC-CCCCCCHHHHHHHHHHHHc--CCCHHHHHHHH-------------
Confidence 99887776553 3333 3588999999998875321 23677777654
Q ss_pred HHHHHHHHHHhccCCCCCCcEEEecCCceEEEccCCCCCCCceEEEEe-CCEEEEEeccccccCCCCcEEEccccCCCcE
Q 000266 435 QRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITH-SGRVIMASEVGVVDIPPEDVLRKGRLNPGMM 513 (1760)
Q Consensus 435 e~rafYey~s~lmepwdGPa~iv~tdG~~igA~lDrnGLRPlr~~~t~-d~~~i~ASE~galdi~~~~vv~kgrl~PGem 513 (1760)
++.++|.|++++.++..+.|+|||+|+||| |++.. ++.|++|||+|+|+..+.++++ +|+|||+
T Consensus 162 ------------~~~l~G~ya~~i~~~~~l~a~RDp~GirPL-~~G~~~~~~~~~ASE~~Al~~ig~~~ir--~l~PGEi 226 (484)
T PRK07272 162 ------------LNTVKGGFAYLLLTEDKLIAALDPNGFRPL-SIGKMKNGAYVVASETCAFDVVGAEWVR--DVQPGEI 226 (484)
T ss_pred ------------HHHccCceeEEEEECCEEEEEECCCCCCcE-EEEEecCCEEEEEECHHHHhccCCceEE--EcCCCeE
Confidence 345799998777666667779999999999 77765 5679999999999988877875 7999999
Q ss_pred EEEEcCCCE
Q 000266 514 LLVDFEKRI 522 (1760)
Q Consensus 514 l~vd~~~g~ 522 (1760)
+.||.++-+
T Consensus 227 v~i~~~g~~ 235 (484)
T PRK07272 227 VIIDDEGIQ 235 (484)
T ss_pred EEEECCceE
Confidence 999975434
|
|
| >cd00980 FwdC/FmdC FwdC/FmdC | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-26 Score=254.32 Aligned_cols=154 Identities=25% Similarity=0.363 Sum_probs=135.2
Q ss_pred CcEEEEecccccCcchhhhhhHHHHHhhccCCCCCccEEEEEecCccchhhhcCCCCcEEEEEecCCchhhcCCCCceEE
Q 000266 1392 LPVYIETPVCNVNRAVGTMLSHEVTKRYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIV 1471 (1760)
Q Consensus 1392 ~~~~~~~~i~n~dR~vG~~Ls~~i~~~~g~~gl~~~~i~i~~~G~aGq~~Gaf~~~G~~i~v~G~A~DyvGkgmsGG~Iv 1471 (1760)
..+.|+.+..+++|+ |.. |..++ |.++|++|+++|++| +|++|+|+|||+||+|.+|+||+|+
T Consensus 19 ~~i~i~g~~~r~~~i-G~~-------------m~~g~--I~v~G~~g~~~G~~M-~gG~I~V~G~ag~~~G~~m~GG~I~ 81 (203)
T cd00980 19 TKLVIEGDVPRLKRI-GAR-------------MTAGE--IVVEGDVGMYVGAGM-KGGKLVVEGNAGSWAGCEMKGGEIT 81 (203)
T ss_pred ceEEEECCcchhchh-hcC-------------cCcCE--EEEEeCCchHhhCcC-cCCEEEEECCCCchHhccCCCcEEE
Confidence 447888889999985 765 55566 566899999999999 6779999999999999999999999
Q ss_pred EeCCCCCCCCCCccccchhhhhccCcccEEEEecccccccccccCCcEEEEcC-CCccccccccCcEEEEeCCCCCcccC
Q 000266 1472 AYPPKGSLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCVRNSGARAVVEG-VGDHGCEYMTGGTVVVLGKTGRNFAA 1550 (1760)
Q Consensus 1472 V~g~~~~~~~~~~~~i~Gn~~~yGatgG~i~v~G~aGeR~gvr~sG~~iVV~G-~Gd~~~eyMtgG~ivVlG~~G~~~ga 1550 (1760)
|+||++.. ......|+ .+||+||+|+|+||||+|+|.+|+||+|+|+| +|+++|++|++|+|+|+|++|.++|+
T Consensus 82 V~GnAg~~---~G~~~~G~--~~gm~GG~I~V~GnaG~~~g~~M~gG~IvV~G~aG~~~G~~M~gG~ivV~G~~g~~~g~ 156 (203)
T cd00980 82 IKGNAGDY---VGSAYRGD--WRGMSGGTITIEGNAGDRLGERMRRGEILIKGDAGIFAGIRMNGGTIIVRGDAGAHPGY 156 (203)
T ss_pred EEcccccc---ccceeecc--cccCcccEEEEEecchhhhhhhcCCcEEEEeecccccccccccCCEEEEeccCCccccC
Confidence 99997653 22333455 57999999999999999999999999999999 79999999999999999999999999
Q ss_pred CCcceEEEEEcCCchhh
Q 000266 1551 GMSGGIAYVLDVDGKFR 1567 (1760)
Q Consensus 1551 gM~gG~iyv~~~~~~~~ 1567 (1760)
+|.+|+|||++....+.
T Consensus 157 ~M~~Gtivv~g~~~~~~ 173 (203)
T cd00980 157 EMKRGTIVIGGEIEELL 173 (203)
T ss_pred cCcceEEEEeCCCcccC
Confidence 99999999999876543
|
This domain of unknown function is found in the subunit C of formylmethanofuran dehydrogenase, an enzyme that catalyzes the first step in methane formation from CO2 in methanogenic archaea, hyperthermophiles and bacteria. There are two isoenzymes, a tungsten-containing isoenzyme (Fwd) and a molybdenum-containing isoenzyme (Fmd). The subunits C of both isoenzymes (FwdC/FmdC) are characterized by a repeated GXXGXXXG motif. |
| >PRK06388 amidophosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-26 Score=278.99 Aligned_cols=183 Identities=22% Similarity=0.201 Sum_probs=149.7
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCcee--------eeccccc
Q 000266 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRI--------LGHNGEI 354 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr~--------laHNGEI 354 (1760)
+.++|++++++++ ++|++|++.++++. + ...+.++++|||+||||++.+++.++|||.. ++|||||
T Consensus 48 dsaGIa~~d~~~i~~~K~~Glv~~vf~~----~-~~~l~G~~gIGH~RyaT~G~~~~~naqP~~~~~~~g~ialvhNG~I 122 (474)
T PRK06388 48 ESAGMAVFDGRKIHLKKGMGLVTDVFNP----A-TDPIKGIVGVGHTRYSTAGSKGVENAGPFVINSSLGYIGISHNGEI 122 (474)
T ss_pred CcceEEEEcCCEEEEEecCcchHHHhhh----h-hhcCCCcEEEeeeeeeecCCCCccCCCCeEeecCCCCEEEEECceE
Confidence 5689999888877 99999999999653 2 2578999999999999999999999999962 7999999
Q ss_pred cChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCH
Q 000266 355 NTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDP 434 (1760)
Q Consensus 355 nt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~ 434 (1760)
+|+..+++.+.. .+. .|.+.||||++.++++...+. .++.+|+..+
T Consensus 123 ~N~~eLr~~L~~-------------------~G~-~F~s~sDtEVi~~li~~~~~~-~~~~eai~~~------------- 168 (474)
T PRK06388 123 VNADELREEMKK-------------------EGY-IFQSDSDTEVMLAELSRNISK-YGLKEGFERS------------- 168 (474)
T ss_pred CCHHHHHHHHHH-------------------CCC-cccCCCHHHHHHHHHHHHHhc-CCHHHHHHHH-------------
Confidence 999888876642 333 358999999999998754432 4788887754
Q ss_pred HHHHHHHHHHhccCCCCCCcEEEecCCceEEEccCCCCCCCceEEEEeCCEEEEEeccccccCCCCcEEEccccCCCcEE
Q 000266 435 QRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMML 514 (1760)
Q Consensus 435 e~rafYey~s~lmepwdGPa~iv~tdG~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~galdi~~~~vv~kgrl~PGeml 514 (1760)
++.++|.|++++.+.+.+.|+|||+|+||| |++..++.|++|||+++|+....+.++ +|+|||++
T Consensus 169 ------------~~~l~G~ya~vi~~~~~l~a~RDp~GiRPL-~~G~~~~~~~~ASE~~Al~~~~~~~i~--~l~PGeiv 233 (474)
T PRK06388 169 ------------MERLRGAYACALMINDRLYAIRDPNGIRPL-VLGKNFDGYIIASESCAIDALSGTTIK--NVEPGEVV 233 (474)
T ss_pred ------------HHhccCceeEEEEECCEEEEEECCCCCCce-EEEecCCEEEEEEChHHHHhccCcEEE--EeCCCEEE
Confidence 456799998776555556669999999999 888888889999999999877676664 89999999
Q ss_pred EEEcCC
Q 000266 515 LVDFEK 520 (1760)
Q Consensus 515 ~vd~~~ 520 (1760)
.|+.++
T Consensus 234 ~i~~~g 239 (474)
T PRK06388 234 EVFDNG 239 (474)
T ss_pred EEECCc
Confidence 998755
|
|
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=264.08 Aligned_cols=286 Identities=17% Similarity=0.193 Sum_probs=200.4
Q ss_pred cccccccccCCCCCCCCCCCCcccccc-----ceEecCCCcccC-cHHHHHHHHHHHHHcCCc-eeccCCCCCccccCcC
Q 000266 983 LRGLLKFKEADVKIPLEEVEPASEIVK-----RFCTGAMSYGSI-SLEAHTTLATAMNKIGGK-SNTGEGGEQPSRMEPL 1055 (1760)
Q Consensus 983 ~r~ll~~~~~~~~i~~~eVe~~t~i~~-----Pf~i~aMS~Gsl-s~ea~~aLA~Aa~~~G~~-s~sGeGge~~e~~~~~ 1055 (1760)
+-+++.|+ ||...+++++|++++|++ ||+++||++..+ .++++.++|+||.++|+. +.|.-++.+.|++...
T Consensus 40 ~~~~~~lr-PRvLrdv~~~dtst~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~ss~slEeIa~a 118 (366)
T PLN02979 40 LGGFCDFR-PRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 118 (366)
T ss_pred hCCeeEEE-CccccCCCCCCCceEECCcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCcCCCHHHHHhc
Confidence 66778887 889999999999999997 999999999876 689999999999999996 4445556778877533
Q ss_pred CCCCCchhhhheeecccC-CcCCChhhhcCchhHH-----HhhhccCCCCC-------CCCCCCccchH-HHHHHhCCCC
Q 000266 1056 SDGSMNPKRSAIKQVASG-RFGVSSYYLTNADELQ-----IKMAQGAKPGE-------GGELPGHKVIG-DIAVTRNSTA 1121 (1760)
Q Consensus 1056 ~~g~~~~~~s~IkQvasg-rFGVt~~~L~~a~~iq-----IKiaQGAKpGe-------GG~Lpg~KV~~-~IA~~R~~~p 1121 (1760)
.++ ..+.|++-. .-+++.+.+..|++.- +.+. ..-+|. |-.+|. +.+. .+...+..++
T Consensus 119 ~~~------~~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD-~pv~G~R~rd~rn~~~~p~-~~~~~~~~~~~~~~~ 190 (366)
T PLN02979 119 GPG------IRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVD-TPRLGRRESDIKNRFTLPP-NLTLKNFEGLDLGKM 190 (366)
T ss_pred cCC------CeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEec-CCCCCCchhhhccCCCCCc-ccchhhhhhccccCC
Confidence 222 356776432 1233444444333211 1110 000110 001111 1000 0000000000
Q ss_pred c------cc-ccCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCc
Q 000266 1122 G------VG-LISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASR 1194 (1760)
Q Consensus 1122 G------~~-lisP~~hhDiySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~ 1194 (1760)
. .. ...-..++. .+|+| |.|||+.+ +.||+||.| .....|..+.++|+|+|+||||+|+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~-ltW~d----l~wlr~~~-~~PvivKgV---~~~~dA~~a~~~Gvd~I~VsnhGGrq---- 257 (366)
T PLN02979 191 DEANDSGLASYVAGQIDRT-LSWKD----VQWLQTIT-KLPILVKGV---LTGEDARIAIQAGAAGIIVSNHGARQ---- 257 (366)
T ss_pred CcccchhHHHHHhhcCCCC-CCHHH----HHHHHhcc-CCCEEeecC---CCHHHHHHHHhcCCCEEEECCCCcCC----
Confidence 0 00 000000111 35665 88899887 899999986 34678889999999999999997653
Q ss_pred cccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCC
Q 000266 1195 WTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCP 1274 (1760)
Q Consensus 1195 ~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP 1274 (1760)
.++++|++.+|+++.+++ .++++|++||||++|.||+||++|||++|++|+++|++++.
T Consensus 258 ----ld~~p~t~~~L~ei~~~~-----~~~~~Vi~dGGIr~G~Di~KALALGAdaV~iGrp~L~~la~------------ 316 (366)
T PLN02979 258 ----LDYVPATISALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAA------------ 316 (366)
T ss_pred ----CCCchhHHHHHHHHHHHh-----CCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHh------------
Confidence 356778999999998874 35799999999999999999999999999999999998753
Q ss_pred CcccccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCce
Q 000266 1275 VGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDM 1327 (1760)
Q Consensus 1275 ~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~dL 1327 (1760)
+++++|.++++.+.+|++..|+.+|+++++|| .++.+
T Consensus 317 ---------------~G~~Gv~~~l~~l~~El~~~m~l~G~~~i~el-~~~~~ 353 (366)
T PLN02979 317 ---------------EGEAGVRKVLQMLRDEFELTMALSGCRSLKEI-SRNHI 353 (366)
T ss_pred ---------------cCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHh-Chhhh
Confidence 36899999999999999999999999999997 54443
|
|
| >PRK07631 amidophosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.4e-26 Score=277.45 Aligned_cols=185 Identities=20% Similarity=0.202 Sum_probs=150.3
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCce--------eeeccccc
Q 000266 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMR--------ILGHNGEI 354 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr--------~laHNGEI 354 (1760)
+.++|++.+++.+ ++|++|++.++++.. +| +.++++++|||+||||++.+++.++|||. .++|||||
T Consensus 40 dsaGia~~~~~~~~~~k~~Glv~~vf~~~--~l--~~l~G~~gIGH~RysT~G~~~~~n~QP~~~~~~~g~ialvhNG~I 115 (475)
T PRK07631 40 EGAGIVVTDGGKLSAHKGLGLVTEVFQNG--EL--DALKGKAAIGHVRYATAGGGGYENVQPLLFRSQTGSLALAHNGNL 115 (475)
T ss_pred ccCeEEEEcCCEEEEEEcccccchhhchh--hh--hccCCCEEEEEeeccccCCCCcCCcCCeEeEcCCCCEEEEEEEEE
Confidence 4678998887766 999999999998753 34 57899999999999999999999999994 37999999
Q ss_pred cChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCH
Q 000266 355 NTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDP 434 (1760)
Q Consensus 355 nt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~ 434 (1760)
+|+...++.+ ++.+.. +++.||||++.++++... ..++.+|+..+
T Consensus 116 ~N~~eLr~~L-------------------~~~G~~-f~s~sDtEVi~~Li~~~~--~~~~~eai~~~------------- 160 (475)
T PRK07631 116 VNATQLKLQL-------------------ENQGSI-FQTTSDTEVLAHLIKRSG--APTLKEQIKNA------------- 160 (475)
T ss_pred ECHHHHHHHH-------------------HhCCCc-CCCCCHHHHHHHHHHHHc--CCCHHHHHHHH-------------
Confidence 9888777654 333433 588999999998876321 24777777754
Q ss_pred HHHHHHHHHHhccCCCCCCcEEEecCCceEEEccCCCCCCCceEEEEeCCEEEEEeccccccCCCCcEEEccccCCCcEE
Q 000266 435 QRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMML 514 (1760)
Q Consensus 435 e~rafYey~s~lmepwdGPa~iv~tdG~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~galdi~~~~vv~kgrl~PGeml 514 (1760)
++.++|.|++++.++..+.++|||+|+||| |++..++.|++|||+++|+..+.++++ +|+|||++
T Consensus 161 ------------~~~l~G~yalvi~~~~~l~aaRDp~GirPL-~~G~~~~~~~~ASE~~Al~~~g~~~ir--~v~PGeiv 225 (475)
T PRK07631 161 ------------LSMLKGAYAFLLMTETELYVALDPNGLRPL-SIGRLGDAYVVASETCAFDVIGATYER--EVEPGELL 225 (475)
T ss_pred ------------HHhCCCCceeeEEeCCEEEEEECCCCCCCE-EEEEeCCEEEEEeChHHHhhcCcceEE--EcCCCeEE
Confidence 355799998777666666678999999999 888888899999999999988887886 79999999
Q ss_pred EEEcCCCE
Q 000266 515 LVDFEKRI 522 (1760)
Q Consensus 515 ~vd~~~g~ 522 (1760)
.|+.++=+
T Consensus 226 ~i~~~g~~ 233 (475)
T PRK07631 226 IINDEGMR 233 (475)
T ss_pred EEECCcEE
Confidence 99965433
|
|
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-25 Score=265.86 Aligned_cols=314 Identities=17% Similarity=0.170 Sum_probs=222.3
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHhhcc----cCcccccccccccCCCCCCCCCCCCcccccc-----ceEecCCCcccC
Q 000266 952 IAKLQEAARGN-SVAAYKEYSKRIQELN----KTCNLRGLLKFKEADVKIPLEEVEPASEIVK-----RFCTGAMSYGSI 1021 (1760)
Q Consensus 952 i~~lq~a~r~~-~~~~~~~~~~~~~~~~----~~~~~r~ll~~~~~~~~i~~~eVe~~t~i~~-----Pf~i~aMS~Gsl 1021 (1760)
+.-|++++|.. +...|.||.....++. |...++.+. |+ ||...+++++|+++++++ ||+++|+++..+
T Consensus 8 i~d~~~~A~~~lp~~~~~Y~~gga~~e~t~~~N~~af~~~~-l~-Pr~L~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l 85 (364)
T PLN02535 8 VNEFQELAKQALPKMYYDFYAGGAEDQHTLKENVQAFRRIT-FR-PRVLVDVSKIDMSTTILGYTISAPIMIAPTAMHKL 85 (364)
T ss_pred HHHHHHHHHHhCCHHHHHHHhcCCcccHHHHHHHHHHHhCC-ee-cccccCCCCCCCceEECCccccccceechHHHhcc
Confidence 56777777765 8999999999887764 566677766 77 889999999999999997 999999999886
Q ss_pred -cHHHHHHHHHHHHHcCCc-eeccCCCCCccccCcCCCCCCchhhhheeecccCC-cCCChhhhcCchhH-----HHhhh
Q 000266 1022 -SLEAHTTLATAMNKIGGK-SNTGEGGEQPSRMEPLSDGSMNPKRSAIKQVASGR-FGVSSYYLTNADEL-----QIKMA 1093 (1760)
Q Consensus 1022 -s~ea~~aLA~Aa~~~G~~-s~sGeGge~~e~~~~~~~g~~~~~~s~IkQvasgr-FGVt~~~L~~a~~i-----qIKia 1093 (1760)
.++++.++|+||.++|+. ..|..+..+.|++...+++ ..++|++-.+ -+++...+..|++. -+.+.
T Consensus 86 ~hp~gE~a~AraA~~~g~~~~lSt~s~~slEeva~~~~~------~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD 159 (364)
T PLN02535 86 AHPEGEIATARAAAACNTIMVLSFMASCTVEEVASSCNA------VRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTAD 159 (364)
T ss_pred cCcchHHHHHHHHHHcCCCeEecCcccCCHHHHHhcCCC------CeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeec
Confidence 588999999999999996 4445567788887643222 4678886432 34444455444322 11111
Q ss_pred ccCCCCC-------CCCCCCccchHHHHH-HhCCCCc---ccc---cCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEE
Q 000266 1094 QGAKPGE-------GGELPGHKVIGDIAV-TRNSTAG---VGL---ISPPPHHDIYSIEDLAQLIYDLKNANPGARISVK 1159 (1760)
Q Consensus 1094 QGAKpGe-------GG~Lpg~KV~~~IA~-~R~~~pG---~~l---isP~~hhDiySiedLaqlI~~Lk~~~p~~pV~VK 1159 (1760)
...+|. |-.+|.. ..+.. ..+..+. ... ..-.-++. .+|++ |.+||..+ +.||+||
T Consensus 160 -~p~~g~R~~d~r~~~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~tW~~----i~~lr~~~-~~PvivK 229 (364)
T PLN02535 160 -VPRLGRREADIKNKMISPQL---KNFEGLLSTEVVSDKGSGLEAFASETFDAS-LSWKD----IEWLRSIT-NLPILIK 229 (364)
T ss_pred -CCCCCCchhhhhcCCCCcch---hhHhhhhccCCCccccccHHHHHHhccCCC-CCHHH----HHHHHhcc-CCCEEEe
Confidence 000000 0011100 00000 0000000 000 00000111 24555 78888875 8999999
Q ss_pred EccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHH
Q 000266 1160 LVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDV 1239 (1760)
Q Consensus 1160 lv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DV 1239 (1760)
.+.. ...|..+.++|+|+|+|+||+|+. .++++|++.+|+++.+.+ ..+++||+||||++|.||
T Consensus 230 gV~~---~~dA~~a~~~GvD~I~vsn~GGr~--------~d~~~~t~~~L~ev~~av-----~~~ipVi~dGGIr~g~Dv 293 (364)
T PLN02535 230 GVLT---REDAIKAVEVGVAGIIVSNHGARQ--------LDYSPATISVLEEVVQAV-----GGRVPVLLDGGVRRGTDV 293 (364)
T ss_pred cCCC---HHHHHHHHhcCCCEEEEeCCCcCC--------CCCChHHHHHHHHHHHHH-----hcCCCEEeeCCCCCHHHH
Confidence 8743 356788999999999999997642 467889999999998874 346999999999999999
Q ss_pred HHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChh
Q 000266 1240 AIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTIT 1319 (1760)
Q Consensus 1240 aKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ 1319 (1760)
+||++|||++|++|+++|+++.. ++.++|.++++.+.+||+..|+.+|+++++
T Consensus 294 ~KALalGA~aV~vGr~~l~~l~~---------------------------~g~~gv~~~l~~l~~el~~~m~l~G~~~i~ 346 (364)
T PLN02535 294 FKALALGAQAVLVGRPVIYGLAA---------------------------KGEDGVRKVIEMLKDELEITMALSGCPSVK 346 (364)
T ss_pred HHHHHcCCCEEEECHHHHhhhhh---------------------------ccHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999997642 368999999999999999999999999999
Q ss_pred hhcCCCce
Q 000266 1320 EMIGRSDM 1327 (1760)
Q Consensus 1320 ELigr~dL 1327 (1760)
|| .+..+
T Consensus 347 el-~~~~l 353 (364)
T PLN02535 347 DI-TRSHV 353 (364)
T ss_pred Hh-hhhhc
Confidence 98 44443
|
|
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-25 Score=263.99 Aligned_cols=306 Identities=15% Similarity=0.139 Sum_probs=215.7
Q ss_pred HHHHHhcC-CHHHHHHHHHHHhhcc----cCcccccccccccCCCCCCCCCCCCcccccc-----ceEecCCCcccC-cH
Q 000266 955 LQEAARGN-SVAAYKEYSKRIQELN----KTCNLRGLLKFKEADVKIPLEEVEPASEIVK-----RFCTGAMSYGSI-SL 1023 (1760)
Q Consensus 955 lq~a~r~~-~~~~~~~~~~~~~~~~----~~~~~r~ll~~~~~~~~i~~~eVe~~t~i~~-----Pf~i~aMS~Gsl-s~ 1023 (1760)
+.+++|.. +...|.||...++++. |...++.+. |+ ||...+++++|+++++++ ||+++||++..+ .+
T Consensus 3 ~~~~Ar~~lp~~~~~Y~~~ga~de~t~~~N~~af~~~~-l~-PRvLr~v~~~d~~ttllG~~~~~P~~iaP~g~~~l~hp 80 (361)
T cd04736 3 YRSLAKKRLPRMVFDYLEGGAEDEKGLRHNRDAFDRWR-FI-PRRLVDVSKRDISASLFGKVWSAPLVIAPTGLNGAFWP 80 (361)
T ss_pred HHHHHHHhCCHHHHHHHccCcchHHHHHHHHHHHHHcC-cc-ccccCCCCCCCCceeECCccccccccccHHHHHhccCC
Confidence 34444444 8889999998887763 566677766 77 889999999999999997 999999999886 68
Q ss_pred HHHHHHHHHHHHcCCc-eeccCCCCCccccCcCCCCCCchhhhheeecccCCcCCChhhhcCchhHH-----HhhhccCC
Q 000266 1024 EAHTTLATAMNKIGGK-SNTGEGGEQPSRMEPLSDGSMNPKRSAIKQVASGRFGVSSYYLTNADELQ-----IKMAQGAK 1097 (1760)
Q Consensus 1024 ea~~aLA~Aa~~~G~~-s~sGeGge~~e~~~~~~~g~~~~~~s~IkQvasgrFGVt~~~L~~a~~iq-----IKiaQGAK 1097 (1760)
+++.++|+||.++|+. ..|..+..+.|++....++ ..++|++-...+++...+..|+..- +.+. -.-
T Consensus 81 ~gE~a~AraA~~~g~~~~lSt~ss~siEeva~a~~~------~~wfQLY~~~r~~~~~ll~RA~~aG~~alvlTvD-~pv 153 (361)
T cd04736 81 NGDLALARAAAKAGIPFVLSTASNMSIEDVARQADG------DLWFQLYVVHRELAELLVKRALAAGYTTLVLTTD-VAV 153 (361)
T ss_pred cHHHHHHHHHHHcCCcEEeeCCCCCCHHHHHhhcCC------CeEEEEEecCHHHHHHHHHHHHHcCCCEEEEecC-CCC
Confidence 9999999999999995 6677778888888643222 3678876543445544554443221 1110 000
Q ss_pred CCC------CC-CCCCccchH-----------HHHH-HhCCCCcccccCC---------------CCCCCCCCHHHHHHH
Q 000266 1098 PGE------GG-ELPGHKVIG-----------DIAV-TRNSTAGVGLISP---------------PPHHDIYSIEDLAQL 1143 (1760)
Q Consensus 1098 pGe------GG-~Lpg~KV~~-----------~IA~-~R~~~pG~~lisP---------------~~hhDiySiedLaql 1143 (1760)
+|. .| .+|. +++. |... +++..+...-+.. ..+++ .+|+ .
T Consensus 154 ~g~R~~d~r~~~~~p~-~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~w~----~ 227 (361)
T cd04736 154 NGYRERDLRNGFAIPF-RYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAIDVEVQAALMSRQMDAS-FNWQ----D 227 (361)
T ss_pred CCCchhhhhcCCCCCc-ccchhhhhhhccCchhhhhhcccccccccccccccccchhhHHHHHHhccCCc-CCHH----H
Confidence 000 00 0110 0000 0000 0000000000000 01112 2344 4
Q ss_pred HHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCC
Q 000266 1144 IYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRG 1223 (1760)
Q Consensus 1144 I~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~ 1223 (1760)
|.+||+.+ +.||++|.+.. ...|..+.++|+|+|+||||+|.. .+..+|++.+|+++.+.+
T Consensus 228 i~~ir~~~-~~pviiKgV~~---~eda~~a~~~G~d~I~VSnhGGrq--------ld~~~~~~~~L~ei~~~~------- 288 (361)
T cd04736 228 LRWLRDLW-PHKLLVKGIVT---AEDAKRCIELGADGVILSNHGGRQ--------LDDAIAPIEALAEIVAAT------- 288 (361)
T ss_pred HHHHHHhC-CCCEEEecCCC---HHHHHHHHHCCcCEEEECCCCcCC--------CcCCccHHHHHHHHHHHh-------
Confidence 88899987 67999998643 467888999999999999995532 244567889999998763
Q ss_pred ceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcCCCHHHHHHHHHHHH
Q 000266 1224 RTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLA 1303 (1760)
Q Consensus 1224 rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g~~e~V~n~~~~l~ 1303 (1760)
+++||+||||++|.||+||++|||++|++|+++|++++. +++++|.++++.+.
T Consensus 289 ~~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~~la~---------------------------~G~~gv~~~l~~l~ 341 (361)
T cd04736 289 YKPVLIDSGIRRGSDIVKALALGANAVLLGRATLYGLAA---------------------------RGEAGVSEVLRLLK 341 (361)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHh---------------------------cCHHHHHHHHHHHH
Confidence 389999999999999999999999999999999998754 36899999999999
Q ss_pred HHHHHHHHhcCCCChhhh
Q 000266 1304 EELREIMSQLGFRTITEM 1321 (1760)
Q Consensus 1304 ~ELr~~Ma~lG~~si~EL 1321 (1760)
+||+..|+++|+++++||
T Consensus 342 ~el~~~m~l~G~~~i~~l 359 (361)
T cd04736 342 EEIDRTLALIGCPDIASL 359 (361)
T ss_pred HHHHHHHHHhCCCCHHHc
Confidence 999999999999999997
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PRK06781 amidophosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-25 Score=270.20 Aligned_cols=183 Identities=21% Similarity=0.201 Sum_probs=148.6
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCce--------eeeccccc
Q 000266 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMR--------ILGHNGEI 354 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr--------~laHNGEI 354 (1760)
+.++|+++++..+ ++|++|++.++++.. +| +.++++++|+|+||||++.+++.++|||. .++|||+|
T Consensus 40 dsaGia~~d~~~~~~~k~~GlV~~vf~~~--~l--~~l~g~~~IGHvRyaT~G~~~~~naqP~~~~~~~g~~alvhNG~I 115 (471)
T PRK06781 40 EGAGIVVNNGEKIVGHKGLGLISEVFSRG--EL--EGLNGKSAIGHVRYATAGGSEVANVQPLLFRFSDHSMALAHNGNL 115 (471)
T ss_pred CcceEEEEeCCEEEEEecCcchhhhcchh--hH--hcCCCCEEEEEeEcccCCCCCcCCCCCeEEecCCCCEEEEEEEEE
Confidence 4688998887766 999999999998753 34 57899999999999999999999999993 47999999
Q ss_pred cChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCH
Q 000266 355 NTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDP 434 (1760)
Q Consensus 355 nt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~ 434 (1760)
+|+...++.+. +.+. .+++.||||++.++++... +.++.+|+..+
T Consensus 116 ~N~~eLr~~L~-------------------~~G~-~f~s~sDtEvI~~Li~~~~--~~~~~eai~~~------------- 160 (471)
T PRK06781 116 INAKMLRRELE-------------------AEGS-IFQTSSDTEVLLHLIKRST--KDSLIESVKEA------------- 160 (471)
T ss_pred cCHHHHHHHHH-------------------hCCC-cCCCCCHHHHHHHHHHHHc--CCCHHHHHHHH-------------
Confidence 98887776553 3333 3578999999998876422 24788887755
Q ss_pred HHHHHHHHHHhccCCCCCCcEEEecCCceEEEccCCCCCCCceEEEEeCCEEEEEeccccccCCCCcEEEccccCCCcEE
Q 000266 435 QRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMML 514 (1760)
Q Consensus 435 e~rafYey~s~lmepwdGPa~iv~tdG~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~galdi~~~~vv~kgrl~PGeml 514 (1760)
++.++|.|++++.++..+.|+|||+|+||| |++..++.|++|||+++++..+.++++ +|+|||++
T Consensus 161 ------------~~~l~G~ya~vi~~~~~l~aaRD~~GirPL-~~g~~~~~~~~ASE~~Al~~~g~~~ir--~v~pGeiv 225 (471)
T PRK06781 161 ------------LNKVKGAFAYLLLTGNEMIVALDPNGFRPL-SIGKMGDAYVVASETCAFDVVGATYIR--DVEPGELL 225 (471)
T ss_pred ------------HHhCCCcEEEEEEECCEEEEEECCCCCCCe-EEEEECCEEEEEECchHhhhcCCcEEE--EeCCCEEE
Confidence 345799998776555556668999999999 888888899999999999988888886 79999999
Q ss_pred EEEcCC
Q 000266 515 LVDFEK 520 (1760)
Q Consensus 515 ~vd~~~ 520 (1760)
.|+.++
T Consensus 226 ~i~~~g 231 (471)
T PRK06781 226 IINDEG 231 (471)
T ss_pred EEECCc
Confidence 998654
|
|
| >PRK09246 amidophosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-25 Score=274.58 Aligned_cols=186 Identities=20% Similarity=0.186 Sum_probs=146.8
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCce-------eeecccccc
Q 000266 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMR-------ILGHNGEIN 355 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr-------~laHNGEIn 355 (1760)
+.++|++.+++.+ ++|++|++.++++-. +| ..+.+.++|+|+||||++.+++.++|||. .++|||||+
T Consensus 30 dsaGi~~~~~~~~~~~k~~Glv~~vf~~~--~l--~~l~g~~~IGHvRysT~G~~~~~n~QP~~~~~~~g~alahNG~I~ 105 (501)
T PRK09246 30 DAAGIVTIDGNRFRLRKANGLVRDVFRTR--HM--RRLQGNMGIGHVRYPTAGSSSSAEAQPFYVNSPYGITLAHNGNLT 105 (501)
T ss_pred ceeEEEEEeCCEEEEEccCCccccccCcc--hH--hhCCCCEEEEEEcCCcCCCCCcccCCCEEEeCCCCEEEEEeEEEc
Confidence 5689999888777 999999999997653 34 57889999999999999999999999996 379999999
Q ss_pred ChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHc--C-----CCHHHHHHHcCcccccc
Q 000266 356 TLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRA--G-----RSLPEAVMMMIPEAWQN 428 (1760)
Q Consensus 356 t~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~--g-----~sl~eAi~~~iPeaw~~ 428 (1760)
|+...++.+. +.+-..+++.||||++.+++...... | .++.+|+..+
T Consensus 106 N~~eLr~~L~-------------------~~~~~~f~s~sDsEvi~~li~~~l~~~~g~~~~~~~l~eai~~~------- 159 (501)
T PRK09246 106 NAEELRKELF-------------------EKDRRHINTTSDSEVLLNVFAHELQKFRGLPLTPEDIFAAVAAV------- 159 (501)
T ss_pred CHHHHHHHHH-------------------hcCCCeeecCCHHHHHHHHHHHHHHhccccccCccCHHHHHHHH-------
Confidence 8877776543 22111247899999999988643322 2 2555555533
Q ss_pred CCCCCHHHHHHHHHHHhccCCCCCCcEEE-ecCCceEEEccCCCCCCCceEEEEe----CCEEEEEeccccccCCCCcEE
Q 000266 429 DKNMDPQRKALYEYFSALMEPWDGPALIS-FTDGRYLGATLDRNGLRPGRFYITH----SGRVIMASEVGVVDIPPEDVL 503 (1760)
Q Consensus 429 ~~~m~~e~rafYey~s~lmepwdGPa~iv-~tdG~~igA~lDrnGLRPlr~~~t~----d~~~i~ASE~galdi~~~~vv 503 (1760)
++.++|.|+++ ++++..+.|+|||+|+||| |++.. ++.|++|||+|+|+..+.+++
T Consensus 160 ------------------~~~l~Gays~v~~~~~~~l~a~RDp~GirPL-~~g~~~~~~~~~~~~ASE~~Al~~~g~~~i 220 (501)
T PRK09246 160 ------------------HRRVRGAYAVVAMIIGHGLVAFRDPHGIRPL-VLGKRETEGGTEYMVASESVALDALGFEFV 220 (501)
T ss_pred ------------------HHhcccceeeEEEecCCcEEEEECCCCCCCe-EEEeecCCCCCEEEEEECHHHHHhCCceEE
Confidence 46689999765 6656556779999999999 67765 358999999999998888888
Q ss_pred EccccCCCcEEEEEcCC
Q 000266 504 RKGRLNPGMMLLVDFEK 520 (1760)
Q Consensus 504 ~kgrl~PGeml~vd~~~ 520 (1760)
| +|+|||+|+||.++
T Consensus 221 r--~v~PGeiv~i~~~g 235 (501)
T PRK09246 221 R--DVAPGEAIYITEDG 235 (501)
T ss_pred E--EeCCCeEEEEECCC
Confidence 5 99999999999755
|
|
| >PRK09123 amidophosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.7e-25 Score=268.95 Aligned_cols=184 Identities=19% Similarity=0.162 Sum_probs=146.5
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCce--------eeeccccc
Q 000266 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMR--------ILGHNGEI 354 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr--------~laHNGEI 354 (1760)
+.++|++++++.+ ++|++|++.++++.-. +| +.++++++|+|+||||++.+++.++|||. .++|||||
T Consensus 50 dsaGia~~~~~~~~~~k~~Glv~~vf~~~~-~l--~~l~G~~~IGH~R~sT~G~~~~~n~QP~~~~~~~g~~alvhNG~I 126 (479)
T PRK09123 50 EAAGIVSFDGERFHSERRMGLVGDHFTDAD-VI--ARLPGNRAIGHVRYSTTGETILRNVQPLFAELEFGGLAIAHNGNL 126 (479)
T ss_pred cCCEEEEEECCEEEEEecCcchhhhhhhhh-hh--hccCCCEEEEEEecccCCCCCcCCCCCceeecCCCCEEEEEEEEE
Confidence 5689999887766 9999999999976422 33 57889999999999999999999999994 37999999
Q ss_pred cChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCH
Q 000266 355 NTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDP 434 (1760)
Q Consensus 355 nt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~ 434 (1760)
+|++.+++.+. +.+.. +.+.||||++.++++... ..++.+|+..+
T Consensus 127 ~N~~eLr~~L~-------------------~~G~~-f~s~sDSEvi~~Li~~~~--~~~~~eai~~~------------- 171 (479)
T PRK09123 127 TNALTLRRELI-------------------RRGAI-FQSTSDTEVILHLIARSR--KASFLDRFIDA------------- 171 (479)
T ss_pred eCHHHHHHHHH-------------------hCCCc-CCCCCHHHHHHHHHHHHc--cCCHHHHHHHH-------------
Confidence 99888777553 22323 578999999998876322 23566665543
Q ss_pred HHHHHHHHHHhccCCCCCCcEEEecCCceEEEccCCCCCCCceEEEEeCCEEEEEeccccccCCCCcEEEccccCCCcEE
Q 000266 435 QRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMML 514 (1760)
Q Consensus 435 e~rafYey~s~lmepwdGPa~iv~tdG~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~galdi~~~~vv~kgrl~PGeml 514 (1760)
++.++|+|++++.+++.+.|+|||+|+||| |++..++.|++|||.++++..+.+.++ +|+|||++
T Consensus 172 ------------~~~L~G~ya~vil~~~~l~a~RD~~GirPL-~~g~~~~~~~~ASE~~Al~~~g~~~~r--~v~pGeiv 236 (479)
T PRK09123 172 ------------LRQVEGAYSLVALTNTKLIGARDPLGIRPL-VLGELDGSPILASETCALDIIGAEFVR--DVEPGELV 236 (479)
T ss_pred ------------HHHhhcceeEEEEECCEEEEEECCCCCCce-EEEEECCEEEEEECchHHhccCCceEE--EECCCeEE
Confidence 345799987776555556668999999999 788778899999999999877777885 89999999
Q ss_pred EEEcCC
Q 000266 515 LVDFEK 520 (1760)
Q Consensus 515 ~vd~~~ 520 (1760)
.||.++
T Consensus 237 ~i~~~g 242 (479)
T PRK09123 237 VIDEDG 242 (479)
T ss_pred EEeCCC
Confidence 999754
|
|
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-24 Score=251.62 Aligned_cols=280 Identities=18% Similarity=0.164 Sum_probs=197.9
Q ss_pred HHhcCCHHHHHHHHHHHhhcc----cCcccccccccccCCCCCCCCCCCCcccccc-----ceEecCCCcccC-cHHHHH
Q 000266 958 AARGNSVAAYKEYSKRIQELN----KTCNLRGLLKFKEADVKIPLEEVEPASEIVK-----RFCTGAMSYGSI-SLEAHT 1027 (1760)
Q Consensus 958 a~r~~~~~~~~~~~~~~~~~~----~~~~~r~ll~~~~~~~~i~~~eVe~~t~i~~-----Pf~i~aMS~Gsl-s~ea~~ 1027 (1760)
|.+.-+...|.+|...+.+.. |...|.++. |+ ++...++++||++++|++ ||+++||+++++ +++++.
T Consensus 7 a~~~l~~~~~~~~~~~~~~~~~~~~n~~~~~~i~-~~-~~~l~~~~~id~~~~~lg~~~~~Pi~iapm~g~~~~~~~~~~ 84 (299)
T cd02809 7 ARRRLPKAVFDYIDGGAGDEVTLRRNRAAFDRIR-LR-PRVLRDVSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHPDGEL 84 (299)
T ss_pred HHHhCCHHHhhhhccccchHHHHHHHHHHHHhce-ee-cccCCCCCCCCCceEECCeecCCCeeeCcccccccCCchHHH
Confidence 333447888888877766553 444466655 55 456667899999999985 999999998887 889999
Q ss_pred HHHHHHHHcCCceeccC-CCCCccccCcCCCCCCchhhhheeecccCCcCCChhhhcCchhHHHhhhccCCCCCCCCCCC
Q 000266 1028 TLATAMNKIGGKSNTGE-GGEQPSRMEPLSDGSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPG 1106 (1760)
Q Consensus 1028 aLA~Aa~~~G~~s~sGe-Gge~~e~~~~~~~g~~~~~~s~IkQvasgrFGVt~~~L~~a~~iqIKiaQGAKpGeGG~Lpg 1106 (1760)
.||++|+++|+.++.|+ +..+++++.... + ...+.|+.... +.+... +.++.-...|++. +
T Consensus 85 ~la~aa~~~g~~~~~~~~~~~~~~~i~~~~----~--~~~~~ql~~~~---~~~~~~--~~i~~~~~~g~~~-----i-- 146 (299)
T cd02809 85 ATARAAAAAGIPFTLSTVSTTSLEEVAAAA----P--GPRWFQLYVPR---DREITE--DLLRRAEAAGYKA-----L-- 146 (299)
T ss_pred HHHHHHHHcCCCEEecCCCcCCHHHHHHhc----C--CCeEEEEeecC---CHHHHH--HHHHHHHHcCCCE-----E--
Confidence 99999999999987665 445555543111 0 23455653320 111111 1111100111110 0
Q ss_pred ccchHHHHHHhCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecC
Q 000266 1107 HKVIGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGH 1186 (1760)
Q Consensus 1107 ~KV~~~IA~~R~~~pG~~lisP~~hhDiySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~ 1186 (1760)
...+-.|. ..+...+ +.|.++|+.+ +.||+||.+.. ...|..+.++|||+|+|+||
T Consensus 147 ---------------~l~~~~p~-~~~~~~~----~~i~~l~~~~-~~pvivK~v~s---~~~a~~a~~~G~d~I~v~~~ 202 (299)
T cd02809 147 ---------------VLTVDTPV-LGRRLTW----DDLAWLRSQW-KGPLILKGILT---PEDALRAVDAGADGIVVSNH 202 (299)
T ss_pred ---------------EEecCCCC-CCCCCCH----HHHHHHHHhc-CCCEEEeecCC---HHHHHHHHHCCCCEEEEcCC
Confidence 00000111 0111222 4578888876 58999997632 35678899999999999998
Q ss_pred CCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhcccccc
Q 000266 1187 DGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMR 1266 (1760)
Q Consensus 1187 ~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r 1266 (1760)
+|. ..++|+|+...|+++.+.+ .+++|||++|||+++.|++|+++|||++|++||++|+++.|
T Consensus 203 gG~--------~~~~g~~~~~~l~~i~~~~-----~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l~~~~~---- 265 (299)
T cd02809 203 GGR--------QLDGAPATIDALPEIVAAV-----GGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLAA---- 265 (299)
T ss_pred CCC--------CCCCCcCHHHHHHHHHHHh-----cCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHHHh----
Confidence 542 2467899999999998874 23699999999999999999999999999999999998644
Q ss_pred ccccCCCCCcccccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhh
Q 000266 1267 KCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEM 1321 (1760)
Q Consensus 1267 ~ch~~~cP~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~EL 1321 (1760)
++.++|.++++.+.+||+.+|..+|+++++||
T Consensus 266 -----------------------~g~~~v~~~i~~l~~el~~~m~~~G~~~i~~l 297 (299)
T cd02809 266 -----------------------GGEAGVAHVLEILRDELERAMALLGCASLADL 297 (299)
T ss_pred -----------------------cCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHh
Confidence 35799999999999999999999999999997
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-24 Score=249.02 Aligned_cols=193 Identities=18% Similarity=0.137 Sum_probs=144.8
Q ss_pred CCcEEEEEecC-CeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCcee--------eeccc
Q 000266 283 AKDFYICSLSS-RTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRI--------LGHNG 352 (1760)
Q Consensus 283 ~~~~yI~SlS~-~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr~--------laHNG 352 (1760)
++.++|+..++ +++ +.||||++.+||..-.+ ..+.+.++|+|+||||.+.+-..++|||.. +||||
T Consensus 31 QesAGIvts~~~~~~~~~kG~Gmv~dVFte~~l----~~L~g~~gIGH~RYsTaG~s~~~n~QPFvv~t~~G~lavAHNG 106 (474)
T KOG0572|consen 31 QESAGIVTSGGRGRLYQIKGMGLVSDVFTEDKL----SQLPGSIGIGHTRYSTAGSSALSNVQPFVVNTPHGSLAVAHNG 106 (474)
T ss_pred ccccceEeecCCCceEEEeccchhhhhhcHHHH----hhCccceeeeeeecccccccccccccceEeeccCceEEEeccC
Confidence 35678887664 456 99999999999876543 778899999999999999999999999975 69999
Q ss_pred cccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCC
Q 000266 353 EINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNM 432 (1760)
Q Consensus 353 EInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m 432 (1760)
|+.|+...|..|.. .+.. ..+.||||.+.++|..- ++.- ++
T Consensus 107 nLVN~~~Lrr~l~~-------------------~g~~-l~T~SDSElil~~~a~~------~~~~--------~~----- 147 (474)
T KOG0572|consen 107 NLVNYKSLRRELLE-------------------EGVG-LNTSSDSELILQLIAYA------PEDV--------YR----- 147 (474)
T ss_pred cccchHHHHHHHHh-------------------cCcc-cccCCcHHHHHHHHHhc------hHhh--------hc-----
Confidence 99998887776543 3333 46899999999987631 1111 00
Q ss_pred CHHHHHHHHHHHhccCCCCCCcEEE-ecCCceEEEccCCCCCCCceEEEEeC---C--EEEEEeccccccCCCCcEEEcc
Q 000266 433 DPQRKALYEYFSALMEPWDGPALIS-FTDGRYLGATLDRNGLRPGRFYITHS---G--RVIMASEVGVVDIPPEDVLRKG 506 (1760)
Q Consensus 433 ~~e~rafYey~s~lmepwdGPa~iv-~tdG~~igA~lDrnGLRPlr~~~t~d---~--~~i~ASE~galdi~~~~vv~kg 506 (1760)
.+-.+|+.-....|+...|.|+++ ++.++ +.|+|||||.||| ++++.+ + .|++|||+|+++..+++..|
T Consensus 148 -~~~~d~~~ri~~~~~~~~g~Yslv~m~~d~-l~avRDp~G~RPL-~iG~r~~~~g~~~~v~aSESc~f~~i~a~y~R-- 222 (474)
T KOG0572|consen 148 -VDAPDWFARIRDVMELLPGAYSLVFMTADK-LYAVRDPYGNRPL-CIGRRSNPDGTEAWVVASESCAFLSIGARYER-- 222 (474)
T ss_pred -ccCccHHHHHHHHHHhcCCceeEEEEEccE-EEEEecCCCCccc-eEeeecCCCCcceEEEEecceeeeecccEEEE--
Confidence 011223333333456678998654 56677 5559999999999 688753 2 79999999999988888885
Q ss_pred ccCCCcEEEEEcCCCEE
Q 000266 507 RLNPGMMLLVDFEKRIV 523 (1760)
Q Consensus 507 rl~PGeml~vd~~~g~i 523 (1760)
+|.|||+|.|+..+-+.
T Consensus 223 ev~PGEiV~i~r~g~~s 239 (474)
T KOG0572|consen 223 EVRPGEIVEISRNGVKS 239 (474)
T ss_pred eecCceEEEEecCCcee
Confidence 99999999999944443
|
|
| >COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-24 Score=256.08 Aligned_cols=304 Identities=17% Similarity=0.190 Sum_probs=207.4
Q ss_pred HHHHHHHHHHhhcc----cCcccccccccccCCCCCCCCCCCCcccccc-----ceEecCCCcccC-cHHHHHHHHHHHH
Q 000266 965 AAYKEYSKRIQELN----KTCNLRGLLKFKEADVKIPLEEVEPASEIVK-----RFCTGAMSYGSI-SLEAHTTLATAMN 1034 (1760)
Q Consensus 965 ~~~~~~~~~~~~~~----~~~~~r~ll~~~~~~~~i~~~eVe~~t~i~~-----Pf~i~aMS~Gsl-s~ea~~aLA~Aa~ 1034 (1760)
+.|.++....+++. |...+.++. |+ ++...+++++|+++++++ ||+++||++|.+ +++++..-|++|.
T Consensus 14 ~~~hy~~~~~~~e~t~~~n~~~f~~i~-l~-~~~L~~v~~idlst~~~G~~l~~Pi~iapmt~g~~~~~~ge~~~a~~A~ 91 (360)
T COG1304 14 KAFHYIDGGAEDEVTLRRNREAFEDIA-LR-PRVLPEVDDIDLSTTFLGQKLSAPIIIAPMTGGGLAHPEGEVINAKLAA 91 (360)
T ss_pred hHhHHHHhhccccccHhhhhhhhhhhe-ee-cccCCCcccCccceEecCccccCCEEEeccccccccChhhHHHHHHHHH
Confidence 56666666555422 222333333 54 556677779999999996 999999999975 5778888888888
Q ss_pred HcCCc-eeccCCCCCccccCcCCCCCCchhhhheeeccc-CCcCCChhhh---cCchhHHHhhhccCCCCCCCCCCCccc
Q 000266 1035 KIGGK-SNTGEGGEQPSRMEPLSDGSMNPKRSAIKQVAS-GRFGVSSYYL---TNADELQIKMAQGAKPGEGGELPGHKV 1109 (1760)
Q Consensus 1035 ~~G~~-s~sGeGge~~e~~~~~~~g~~~~~~s~IkQvas-grFGVt~~~L---~~a~~iqIKiaQGAKpGeGG~Lpg~KV 1109 (1760)
.+|.. +.+|-|+.+.|+....+ . .|++= ..-++++..+ .++..-++... +. -...+...
T Consensus 92 ~a~~~~i~s~~gs~~ie~~~~~~-----~-----~q~y~~~~R~~~~~~~~~a~n~G~~~lv~t--~d----~~~~~~r~ 155 (360)
T COG1304 92 AAGEPFILSTVGSQRIEEVAAAP-----P-----FQLYFSKDREFAPNLVDRAANAGAKQLVLT--VD----SPVGGERE 155 (360)
T ss_pred HcCCCeeeeccccCcHHHhhcCc-----c-----hhhhhHHHHHhhHHHHHHHHhcCCcceeec--cC----ccchHHHH
Confidence 88874 55566666665543111 0 11100 0001222222 11111111110 00 00011111
Q ss_pred hHH---H---HHHhCCCCcccccCCCCCCCCCCHH-HH-------------HHHHHHHHHhCCCCceEEEEccccCHHHH
Q 000266 1110 IGD---I---AVTRNSTAGVGLISPPPHHDIYSIE-DL-------------AQLIYDLKNANPGARISVKLVSEAGVGVI 1169 (1760)
Q Consensus 1110 ~~~---I---A~~R~~~pG~~lisP~~hhDiySie-dL-------------aqlI~~Lk~~~p~~pV~VKlv~~~Gvg~i 1169 (1760)
.+. + +..-|.++.+.+..|.++.+.+... .+ ++.+.+++..+ ..|+++|.+.. ...
T Consensus 156 ~d~~~~i~a~~~~~h~n~~qe~~~p~g~~~~~~~~~~i~~~~~~~~~P~i~ked~~~i~~~~-~~~lv~kGV~~---~~D 231 (360)
T COG1304 156 RDAVNGISAPALAIHLNVLQEATQPEGDRDGKGGLDSIAEYVSALSVPVISKEDGAGISKEW-AGPLVLKGILA---PED 231 (360)
T ss_pred HHHHhccCCCcccccccHHHHhcCCcccccccchhhHHHHHHHhcCCCcccHHHHhHHHHhc-CCcHHHhCCCC---HHH
Confidence 111 1 3456677777778887776665431 11 23466677765 77888886543 256
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCc
Q 000266 1170 ASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEE 1249 (1760)
Q Consensus 1170 A~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAda 1249 (1760)
+.++.+.|+|+|.+|+|+|. +.+||+|+..+|+++.+++ .++++|++|||||+|.||+||++|||++
T Consensus 232 ~~~a~~tg~~~I~vsnhggr--------qlD~g~st~~~L~ei~~av-----~~~~~vi~dGGiR~G~Dv~KAlALGA~~ 298 (360)
T COG1304 232 AAGAGGTGADGIEVSNHGGR--------QLDWGISTADSLPEIVEAV-----GDRIEVIADGGIRSGLDVAKALALGADA 298 (360)
T ss_pred HHhhccCCceEEEEEcCCCc--------cccCCCChHHHHHHHHHHh-----CCCeEEEecCCCCCHHHHHHHHHhCCch
Confidence 78899999999999999663 5799999999999999984 4579999999999999999999999999
Q ss_pred cccchhHHHHhccccccccccCCCCCcccccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCceee
Q 000266 1250 FGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLE 1329 (1760)
Q Consensus 1250 Vg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~dLl~ 1329 (1760)
|++|+++|+++++ ++.++|.+.++.+.+||+..|+++|++||+|| .++.++.
T Consensus 299 v~igrp~L~~l~~---------------------------~g~~GV~~~le~~~~El~~~M~L~G~~~i~el-~~~~l~~ 350 (360)
T COG1304 299 VGIGRPFLYGLAA---------------------------GGEAGVERVLEIIRKELKIAMALTGAKNIEEL-KRVPLVL 350 (360)
T ss_pred hhhhHHHHHHHHh---------------------------ccHHHHHHHHHHHHHHHHHHHHhcCCCcHHHh-ccCceee
Confidence 9999999999865 46899999999999999999999999999997 7777765
Q ss_pred cc
Q 000266 1330 VD 1331 (1760)
Q Consensus 1330 ~~ 1331 (1760)
..
T Consensus 351 ~~ 352 (360)
T COG1304 351 SG 352 (360)
T ss_pred cc
Confidence 43
|
|
| >PLN02440 amidophosphoribosyltransferase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-24 Score=266.32 Aligned_cols=183 Identities=23% Similarity=0.273 Sum_probs=144.0
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCce--------eeeccccc
Q 000266 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMR--------ILGHNGEI 354 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr--------~laHNGEI 354 (1760)
+.++|+++++..+ ++|++|++.++++.. +| ..+.++++|+|+||||++.+++.++|||. .++|||||
T Consensus 30 ds~Gi~~~d~~~~~~~k~~Glv~~vf~~~--~l--~~l~g~~~IGHvRysT~G~~~~~n~QPf~~~~~~g~~~lahNG~I 105 (479)
T PLN02440 30 EGAGIVTVDGNRLQSITGNGLVSDVFDES--KL--DQLPGDIAIGHVRYSTAGASSLKNVQPFVANYRFGSIGVAHNGNL 105 (479)
T ss_pred ccceEEEEcCCEEEEEecCCchhhhcchh--hh--hccCCcEEEEEEeccccCCCCccCCCCceeecCCCCEEEEEEEEE
Confidence 4678999888776 999999999998764 34 57889999999999999999999999996 37999999
Q ss_pred cChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCH
Q 000266 355 NTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDP 434 (1760)
Q Consensus 355 nt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~ 434 (1760)
+|+..+++.+. +.+.. +.+.||||++.+++.... ..++.+|+.
T Consensus 106 ~N~~eLr~~L~-------------------~~g~~-f~s~sDsEvi~~li~~~~--~~~~~~a~~--------------- 148 (479)
T PLN02440 106 VNYEELRAKLE-------------------ENGSI-FNTSSDTEVLLHLIAISK--ARPFFSRIV--------------- 148 (479)
T ss_pred eCHHHHHHHHH-------------------hcCCc-CCCCCHHHHHHHHHHHhh--hhhHHHHHH---------------
Confidence 98877776443 33333 478999999988875322 124444444
Q ss_pred HHHHHHHHHHhccCCCCCCcEEEecCCceEEEccCCCCCCCceEEEE-eCCEEEEEeccccccCCCCcEEEccccCCCcE
Q 000266 435 QRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYIT-HSGRVIMASEVGVVDIPPEDVLRKGRLNPGMM 513 (1760)
Q Consensus 435 e~rafYey~s~lmepwdGPa~iv~tdG~~igA~lDrnGLRPlr~~~t-~d~~~i~ASE~galdi~~~~vv~kgrl~PGem 513 (1760)
..++.++|+|++++.+.+.+.|+|||+|+||| |++. +++.|++|||+|+++..+.+.++ +|+|||+
T Consensus 149 ----------~~~~~l~G~fa~vi~~~~~l~a~RD~~G~RPL-~~g~~~~~~~~vASE~~al~~~g~~~ir--~v~PGei 215 (479)
T PLN02440 149 ----------DACEKLKGAYSMVFLTEDKLVAVRDPHGFRPL-VMGRRSNGAVVFASETCALDLIGATYER--EVNPGEV 215 (479)
T ss_pred ----------HHHHHhccceeeeEEECCEEEEEECCCCCCce-EEEEeCCCEEEEEECchHHhccCCcEEE--EeCCCeE
Confidence 33566899998776544447779999999999 6765 46789999999999987777875 9999999
Q ss_pred EEEEcCC
Q 000266 514 LLVDFEK 520 (1760)
Q Consensus 514 l~vd~~~ 520 (1760)
++||.++
T Consensus 216 v~i~~~g 222 (479)
T PLN02440 216 IVVDKDK 222 (479)
T ss_pred EEEECCC
Confidence 9998654
|
|
| >PRK08341 amidophosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-24 Score=262.78 Aligned_cols=181 Identities=19% Similarity=0.143 Sum_probs=141.5
Q ss_pred CcEEEEEecCCeEEEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCcee--------eecccccc
Q 000266 284 KDFYICSLSSRTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRI--------LGHNGEIN 355 (1760)
Q Consensus 284 ~~~yI~SlS~~tivyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr~--------laHNGEIn 355 (1760)
+.++|++.+++..++|++|++.++++.. ++ ..++++++|+|+||||++. +.++|||.. ++|||||+
T Consensus 32 dsaGIa~~~~~~~~~K~~Glv~~vf~~~--~~--~~l~g~~~IGH~R~sT~G~--~~~~QP~~~~~~~g~ialvhNG~I~ 105 (442)
T PRK08341 32 EGAGISVWRHRIRTVKGHGLVSEVFKGG--SL--SRLKSNLAIGHVRYSTSGS--LSEVQPLEVECCGYKIAIAHNGTLT 105 (442)
T ss_pred ccceEEEECCcEEEEecCCchhhhhccc--cc--ccCCCCEEEEEeeccccCC--CcCcCCEEeecCCCCEEEEEEEEEE
Confidence 5689999886633999999999997643 33 6789999999999999994 689999954 69999999
Q ss_pred ChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHH
Q 000266 356 TLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQ 435 (1760)
Q Consensus 356 t~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e 435 (1760)
|+..+++.+. +.+.+ |.+.||||++.+++........++.+|++.+
T Consensus 106 N~~eLr~~L~-------------------~~G~~-F~s~sDtEVI~~li~~~~~~~~~~~~ai~~~-------------- 151 (442)
T PRK08341 106 NFLPLRRKYE-------------------SRGVK-FRSSVDTELIGISFLWHYSETGDEFEAMREV-------------- 151 (442)
T ss_pred CHHHHHHHHH-------------------HcCCc-cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHH--------------
Confidence 9888776543 33333 5789999999998764444334666777654
Q ss_pred HHHHHHHHHhccCCCCCCcEEEecCCceEEEccCCCCCCCceEEEEeCCEEEEEeccccccCCCCcEEEccccCCCcEEE
Q 000266 436 RKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMMLL 515 (1760)
Q Consensus 436 ~rafYey~s~lmepwdGPa~iv~tdG~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~galdi~~~~vv~kgrl~PGeml~ 515 (1760)
|+.++|.|++++.++..+.|+|||+|+||| |++.. +.+++|||+++|+.....+ + +|+|||++.
T Consensus 152 -----------~~~l~G~yal~i~~~~~l~a~RD~~GirPL-~~G~~-~~~~~ASE~~Al~~~~~~v-~--~l~PGeiv~ 215 (442)
T PRK08341 152 -----------FNEVKGAYSVAILFDGKIIVARDPVGFRPL-SYGEG-DGHYFASEDSALRMFVNEI-R--DVFPGEVFV 215 (442)
T ss_pred -----------HHhccCceEEEEEECCEEEEEEcCCCceEE-EEEEC-CEEEEEeCcHHHHhhCCeE-E--EeCCCEEEE
Confidence 456799998776655666669999999999 78875 4589999999998766544 3 899999999
Q ss_pred EEcCC
Q 000266 516 VDFEK 520 (1760)
Q Consensus 516 vd~~~ 520 (1760)
++.++
T Consensus 216 i~~~g 220 (442)
T PRK08341 216 VSEGE 220 (442)
T ss_pred EECCc
Confidence 98643
|
|
| >PRK05793 amidophosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-24 Score=264.62 Aligned_cols=186 Identities=20% Similarity=0.214 Sum_probs=149.8
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCcee--------eeccccc
Q 000266 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRI--------LGHNGEI 354 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr~--------laHNGEI 354 (1760)
+.++|++++++.+ ++|++|++.++++.. +| +.+.++++|+|+||||.+.+++.|+|||.. ++|||+|
T Consensus 45 dsaGIa~~~~~~~~~~k~~G~v~~~f~~~--~l--~~l~g~~~iGHvR~sT~G~~~~~n~qPf~~~~~~g~~alvhNG~I 120 (469)
T PRK05793 45 ESAGIAVSDGEKIKVHKGMGLVSEVFSKE--KL--KGLKGNSAIGHVRYSTTGASDLDNAQPLVANYKLGSIAIAHNGNL 120 (469)
T ss_pred CcceEEEEeCCEEEEEecccccccccchh--hH--hccCCcEEEEEeecccCCCCCCCCCCCeEeecCCCCEEEEEEEEE
Confidence 4689998887766 999999999998653 34 578999999999999999999999999953 7999999
Q ss_pred cChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCH
Q 000266 355 NTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDP 434 (1760)
Q Consensus 355 nt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~ 434 (1760)
+|+...++.+. +.+. .+++.||||++.+++.... ..++++|+..++
T Consensus 121 ~N~~eLr~~L~-------------------~~g~-~f~s~sDSEvi~~li~~~~--~~~~~~ai~~~~------------ 166 (469)
T PRK05793 121 VNADVIRELLE-------------------DGGR-IFQTSIDSEVILNLIARSA--KKGLEKALVDAI------------ 166 (469)
T ss_pred eCHHHHHHHHH-------------------hcCC-cccCCCHHHHHHHHHHHHc--cCCHHHHHHHHH------------
Confidence 98887776553 2233 3578999999988875322 247788877553
Q ss_pred HHHHHHHHHHhccCCCCCCcEEEecCCceEEEccCCCCCCCceEEEEeCCEEEEEeccccccCCCCcEEEccccCCCcEE
Q 000266 435 QRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMML 514 (1760)
Q Consensus 435 e~rafYey~s~lmepwdGPa~iv~tdG~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~galdi~~~~vv~kgrl~PGeml 514 (1760)
+.++|.|++++.+++.+.|+||++|+||| |++..++.|++|||.++++..+.+.++ +|+|||++
T Consensus 167 -------------~~l~G~ya~vi~~~~~l~a~RD~~GirPL-~~g~~~~~~~vASE~~al~~~g~~~~r--~v~pGeiv 230 (469)
T PRK05793 167 -------------QAIKGSYALVILTEDKLIGVRDPHGIRPL-CLGKLGDDYILSSESCALDTIGAEFIR--DVEPGEIV 230 (469)
T ss_pred -------------HHhhhhceEEEEECCEEEEEECCCCCCCc-EEEEECCEEEEEEChHHHhhcCcceEE--EeCCCeEE
Confidence 45689988776656667779999999999 788888889999999999987777886 79999999
Q ss_pred EEEcCCCEE
Q 000266 515 LVDFEKRIV 523 (1760)
Q Consensus 515 ~vd~~~g~i 523 (1760)
.|+.++=++
T Consensus 231 ~i~~~g~~~ 239 (469)
T PRK05793 231 IIDEDGIKS 239 (469)
T ss_pred EEECCceEE
Confidence 998654343
|
|
| >TIGR01134 purF amidophosphoribosyltransferase | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.3e-24 Score=259.51 Aligned_cols=185 Identities=24% Similarity=0.240 Sum_probs=149.3
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCcee-------eecccccc
Q 000266 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRI-------LGHNGEIN 355 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr~-------laHNGEIn 355 (1760)
+.++|++.+++.+ +||++|++.++++.. +| +.+.++++|+|+||||++.+++.++|||.. ++|||+|+
T Consensus 30 ds~Gia~~d~~~~~~~k~~glv~~v~~~~--~l--~~l~g~~~IgHvR~aT~G~~~~~n~QPf~~~~~~g~alahNG~I~ 105 (442)
T TIGR01134 30 EAAGIAVSDGNKIRTHKGNGLVSDVFDER--HL--ERLKGNVGIGHVRYSTAGSSSLSNAQPFVVNSPGGIALAHNGNLV 105 (442)
T ss_pred cceEEEEEeCCEEEEEEcCCchhhhcchh--hh--hcccCcEEEEEEEecCCCCCCccCCCCEEEeCCCCEEEEEEEEEc
Confidence 4689999888777 999999999996543 23 678899999999999999999999999973 79999999
Q ss_pred ChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHH
Q 000266 356 TLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQ 435 (1760)
Q Consensus 356 t~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e 435 (1760)
|+...++.+. +.+.. +++.||||++.+++......+.++.+|+..+
T Consensus 106 N~~eLr~~L~-------------------~~g~~-f~~~sDSEvi~~li~~~~~~~~~~~~ai~~~-------------- 151 (442)
T TIGR01134 106 NAEELREELE-------------------EEGRI-FNTTSDSEVLLHLLARERLEEDDLFEAIARV-------------- 151 (442)
T ss_pred CHHHHHHHHH-------------------hcCCc-CCCCCHHHHHHHHHHHhhcccCCHHHHHHHH--------------
Confidence 8877766543 23333 4789999999888764332335777777755
Q ss_pred HHHHHHHHHhccCCCCCCcEEEecCCceEEEccCCCCCCCceEEEEeCCEEEEEeccccccCCCCcEEEccccCCCcEEE
Q 000266 436 RKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMMLL 515 (1760)
Q Consensus 436 ~rafYey~s~lmepwdGPa~iv~tdG~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~galdi~~~~vv~kgrl~PGeml~ 515 (1760)
++.++|+|++++.+++.+.++|||+|+||| |++..++.|++|||.++++..+.+.++ +|+|||++.
T Consensus 152 -----------~~~l~G~falvi~~~~~L~a~RD~~G~rPL-~~g~~~~~~~~ASE~~al~~~g~~~~r--~v~pGeiv~ 217 (442)
T TIGR01134 152 -----------LKRVRGAYALVIMIGDGLIAVRDPHGIRPL-VLGKRGDGYVVASESCALDILGAEFIR--DVEPGEAVV 217 (442)
T ss_pred -----------HHHhCccceEEEEECCEEEEEECCCCCCCc-EEEEeCCEEEEEeCchHhcccCCcEEE--EECCCeEEE
Confidence 344699998888788888889999999999 777778899999999999976667775 899999999
Q ss_pred EEcCC
Q 000266 516 VDFEK 520 (1760)
Q Consensus 516 vd~~~ 520 (1760)
++.++
T Consensus 218 i~~~~ 222 (442)
T TIGR01134 218 IDDGG 222 (442)
T ss_pred EECCc
Confidence 98543
|
Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase. |
| >PRK08525 amidophosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-23 Score=256.90 Aligned_cols=183 Identities=21% Similarity=0.208 Sum_probs=147.6
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCce--------eeeccccc
Q 000266 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMR--------ILGHNGEI 354 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr--------~laHNGEI 354 (1760)
+.++|++++++.+ ++|++|++.+|++... + ..+.+.++|+|+||||++.+++.++|||. .++|||||
T Consensus 30 DsaGia~~~~~~~~~~k~~G~v~~~f~~~~--~--~~~~g~~~iGH~R~at~g~~~~~naqP~~~~~~~g~~~lvhNG~I 105 (445)
T PRK08525 30 EASGISVSNGKKIKTIKGRGLVTQVFNEDN--L--KTLKGEIAIGHNRYSTAGNDSILDAQPVFARYDLGEIAIVHNGNL 105 (445)
T ss_pred ccceEEEEeCCEEEEEEcCcchhhccchhh--h--hccCCcEEEeecccccCCCCCCCCCCCeEeecCCCCEEEEEEEEE
Confidence 4688999887766 9999999999976543 3 57889999999999999999999999996 37999999
Q ss_pred cChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCH
Q 000266 355 NTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDP 434 (1760)
Q Consensus 355 nt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~ 434 (1760)
+|+..+++.+. +.+.. +.+.||||++.++++... +.++.+|+..+
T Consensus 106 ~N~~eLr~~L~-------------------~~G~~-f~s~sDtEvi~~l~~~~~--~~~~~ea~~~~------------- 150 (445)
T PRK08525 106 VNKKEVRSRLI-------------------QDGAI-FQTNMDTENLIHLIARSK--KESLKDRIIEA------------- 150 (445)
T ss_pred ECHHHHHHHHH-------------------hcCCc-CCCCCHHHHHHHHHHHHc--CCCHHHHHHHH-------------
Confidence 99988877553 23333 578999999998876431 24777776644
Q ss_pred HHHHHHHHHHhccCCCCCCcEEEecCCceEEEccCCCCCCCceEEEEe-CCEEEEEeccccccCCCCcEEEccccCCCcE
Q 000266 435 QRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITH-SGRVIMASEVGVVDIPPEDVLRKGRLNPGMM 513 (1760)
Q Consensus 435 e~rafYey~s~lmepwdGPa~iv~tdG~~igA~lDrnGLRPlr~~~t~-d~~~i~ASE~galdi~~~~vv~kgrl~PGem 513 (1760)
++.++|+|++++.+.+.+.++||++|+||| |++.. |+.+++|||.++|+..+.+.++ +++|||+
T Consensus 151 ------------~~~L~G~fa~vi~~~~~l~~~RD~~GirPL-~~g~~~~~~~~~ASE~~al~~~g~~~~~--~~~pGe~ 215 (445)
T PRK08525 151 ------------LKKIIGAYCLVLLSRSKMFAIRDPHGVRPL-SLGRLKDGGYIVASETCAFDLIGAEFIR--DVKPGEM 215 (445)
T ss_pred ------------HHhcCCceEEEEEeCCEEEEEECCCCCCCe-EEEEecCCEEEEEECHHHhhccCCcEEE--EeCCCeE
Confidence 345799998887766667779999999999 78764 5789999999999887777775 8999999
Q ss_pred EEEEcCC
Q 000266 514 LLVDFEK 520 (1760)
Q Consensus 514 l~vd~~~ 520 (1760)
+.++..+
T Consensus 216 v~i~~~~ 222 (445)
T PRK08525 216 LIFEQGN 222 (445)
T ss_pred EEEEcCC
Confidence 9999543
|
|
| >cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-21 Score=221.32 Aligned_cols=187 Identities=21% Similarity=0.215 Sum_probs=143.9
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCce--------eeeccccc
Q 000266 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMR--------ILGHNGEI 354 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr--------~laHNGEI 354 (1760)
+.++|+..++..+ ++|++|.+.+++ . |+..+.+.+.++|+|+|++|++.+++.++|||. +++|||+|
T Consensus 29 D~~Gi~~~d~~~~~~~k~~g~~~~~~---~-~~~~~~~~~~~~lgH~R~at~g~~~~~n~qPf~~~~~~~~~~~~hNG~I 104 (252)
T cd00715 29 ESAGIATSDGKRFHTHKGMGLVSDVF---D-EEKLRRLPGNIAIGHVRYSTAGSSSLENAQPFVVNSPLGGIALAHNGNL 104 (252)
T ss_pred ceeEEEEEeCCEEEEEecCCcHHHhh---c-ccchhhCCCcEEEEEEEcccCCCCCccCCCCcEEecCCCcEEEEEEEEE
Confidence 4578998887666 999999998884 3 433467889999999999999999999999996 47999999
Q ss_pred cChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCH
Q 000266 355 NTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDP 434 (1760)
Q Consensus 355 nt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~ 434 (1760)
.|+..+++.+.. .+ ..+.+.||||++.++++..... .++.+|+..+
T Consensus 105 ~n~~~L~~~l~~-------------------~g-~~~~~~tDSEvi~~l~~~~~~~-~~~~~al~~~------------- 150 (252)
T cd00715 105 VNAKELREELEE-------------------EG-RIFQTTSDSEVILHLIARSLAK-DDLFEAIIDA------------- 150 (252)
T ss_pred CCHHHHHHHHHH-------------------CC-CcccCCCHHHHHHHHHHHhhcc-CCHHHHHHHH-------------
Confidence 988877765432 22 1236799999998876643221 3566666544
Q ss_pred HHHHHHHHHHhccCCCCCCcEEEecCCceEEEccCCCCCCCceEEEEeC-CEEEEEeccccccCCCCcEEEccccCCCcE
Q 000266 435 QRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHS-GRVIMASEVGVVDIPPEDVLRKGRLNPGMM 513 (1760)
Q Consensus 435 e~rafYey~s~lmepwdGPa~iv~tdG~~igA~lDrnGLRPlr~~~t~d-~~~i~ASE~galdi~~~~vv~kgrl~PGem 513 (1760)
++.++|++++++.|++.+.++||+.|+||+ |+...+ +.+++|||..++...+.+.++ +|.||++
T Consensus 151 ------------~~~l~G~~a~~~~d~~~l~~~RD~~G~~PL-~~~~~~~~~~~vASE~~al~~~~~~~~~--~l~pg~~ 215 (252)
T cd00715 151 ------------LERVKGAYSLVIMTADGLIAVRDPHGIRPL-VLGKLEGDGYVVASESCALDIIGAEFVR--DVEPGEI 215 (252)
T ss_pred ------------HHhccCceEEEEEECCEEEEEECCCCCCCe-EEEEeCCCeEEEEECHHHhcccCCcEEE--EcCCCeE
Confidence 345699998888777878889999999999 676655 899999999998765444554 8999999
Q ss_pred EEEEcCCCEE
Q 000266 514 LLVDFEKRIV 523 (1760)
Q Consensus 514 l~vd~~~g~i 523 (1760)
+.|+.++-++
T Consensus 216 ~~i~~~~~~~ 225 (252)
T cd00715 216 VVIDDDGLES 225 (252)
T ss_pred EEEECCceEE
Confidence 9998755444
|
This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer. |
| >cd00980 FwdC/FmdC FwdC/FmdC | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-21 Score=216.28 Aligned_cols=124 Identities=29% Similarity=0.422 Sum_probs=116.7
Q ss_pred EEEEecCcc--chhhhcCCCCcEEEEEecCCchhhcCCCCceEEEeCCCCCCCCCCccccchhhhhccCcccEEEEeccc
Q 000266 1430 HIKLTGSAG--QSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATSGEAYFNGMA 1507 (1760)
Q Consensus 1430 ~i~~~G~aG--q~~Gaf~~~G~~i~v~G~A~DyvGkgmsGG~IvV~g~~~~~~~~~~~~i~Gn~~~yGatgG~i~v~G~a 1507 (1760)
+|.|+|+.. .++|+.|.. ++|+|+||++||+|++|+||+|+|+|| +|+.++++|+||+|+|+|||
T Consensus 20 ~i~i~g~~~r~~~iG~~m~~-g~I~v~G~~g~~~G~~M~gG~I~V~G~------------ag~~~G~~m~GG~I~V~GnA 86 (203)
T cd00980 20 KLVIEGDVPRLKRIGARMTA-GEIVVEGDVGMYVGAGMKGGKLVVEGN------------AGSWAGCEMKGGEITIKGNA 86 (203)
T ss_pred eEEEECCcchhchhhcCcCc-CEEEEEeCCchHhhCcCcCCEEEEECC------------CCchHhccCCCcEEEEEccc
Confidence 477789988 899999965 699999999999999999999999999 78899999999999999999
Q ss_pred ccccccc-------cCCcEEEEcC-CCccccccccCcEEEEeCCCCCcccCCCcceEEEEEcCCchh
Q 000266 1508 AERFCVR-------NSGARAVVEG-VGDHGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYVLDVDGKF 1566 (1760)
Q Consensus 1508 GeR~gvr-------~sG~~iVV~G-~Gd~~~eyMtgG~ivVlG~~G~~~gagM~gG~iyv~~~~~~~ 1566 (1760)
|+++|.. |+||+|+|+| +|+++|++|+||+|+|.|++|.++|..|.+|+|+|.+..+.+
T Consensus 87 g~~~G~~~~G~~~gm~GG~I~V~GnaG~~~g~~M~gG~IvV~G~aG~~~G~~M~gG~ivV~G~~g~~ 153 (203)
T cd00980 87 GDYVGSAYRGDWRGMSGGTITIEGNAGDRLGERMRRGEILIKGDAGIFAGIRMNGGTIIVRGDAGAH 153 (203)
T ss_pred cccccceeecccccCcccEEEEEecchhhhhhhcCCcEEEEeecccccccccccCCEEEEeccCCcc
Confidence 9999984 9999999999 699999999999999999999999999999999999987765
|
This domain of unknown function is found in the subunit C of formylmethanofuran dehydrogenase, an enzyme that catalyzes the first step in methane formation from CO2 in methanogenic archaea, hyperthermophiles and bacteria. There are two isoenzymes, a tungsten-containing isoenzyme (Fwd) and a molybdenum-containing isoenzyme (Fmd). The subunits C of both isoenzymes (FwdC/FmdC) are characterized by a repeated GXXGXXXG motif. |
| >cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-20 Score=211.29 Aligned_cols=177 Identities=19% Similarity=0.182 Sum_probs=140.5
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCcee------eeccccccC
Q 000266 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRI------LGHNGEINT 356 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr~------laHNGEInt 356 (1760)
+..+|++.+.+.+ ++|+.|+++++++.+. + ..+.+.++|+|+||+|++.+++.++|||.. ++|||||+|
T Consensus 29 d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~--~--~~~~~~~~igH~R~at~g~~~~~n~qPf~~~~~~~~~vhNG~I~N 104 (215)
T cd00714 29 DSAGIAVIGDGSLEVVKAVGKVANLEEKLA--E--KPLSGHVGIGHTRWATHGEPTDVNAHPHRSCDGEIAVVHNGIIEN 104 (215)
T ss_pred CcceEEEEeCCEEEEEEcCccHHHHHHHhh--h--ccCCccEEEEEEEccCCCCCCccCCCCCCcCCCCEEEEEeEEEcC
Confidence 4568888766666 9999999999987653 3 456899999999999999888899999953 699999999
Q ss_pred hhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHHH
Q 000266 357 LRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQR 436 (1760)
Q Consensus 357 ~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e~ 436 (1760)
+..+++.+..+ +. .+.+.||||++.++++.....+.++++|+..++
T Consensus 105 ~~~Lr~~L~~~-------------------g~-~~~~~sDsEvi~~l~~~~~~~~~~~~~ai~~~~-------------- 150 (215)
T cd00714 105 YAELKEELEAK-------------------GY-KFESETDTEVIAHLIEYYYDGGLDLLEAVKKAL-------------- 150 (215)
T ss_pred HHHHHHHHHhc-------------------CC-cccCCCHHHHHHHHHHHHHhcCCCHHHHHHHHH--------------
Confidence 98887766432 22 236899999999988765555558888888653
Q ss_pred HHHHHHHHhccCCCCCCcEEEecC---CceEEEccCCCCCCCceEEEEeCCEEEEEeccccccCCCCcEEEccccCCCcE
Q 000266 437 KALYEYFSALMEPWDGPALISFTD---GRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMM 513 (1760)
Q Consensus 437 rafYey~s~lmepwdGPa~iv~td---G~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~galdi~~~~vv~kgrl~PGem 513 (1760)
+.++|.|++++.| +..+.++|| .||| |++..++.+++|||.++|.-...++. -|++||+
T Consensus 151 -----------~~l~G~fa~~~~d~~~~~~l~~~RD---~~PL-~~~~~~~~~~~aSE~~al~~~~~~~~---~~~~~~~ 212 (215)
T cd00714 151 -----------KRLEGAYALAVISKDEPDEIVAARN---GSPL-VIGIGDGENFVASDAPALLEHTRRVI---YLEDGDI 212 (215)
T ss_pred -----------HHhccceEEEEEEeCCCCEEEEEEC---CCCc-EEEEcCCeEEEEECHHHHHHhcCEEE---EECCCCE
Confidence 4469999888776 335666899 4999 88888889999999999976666665 6899999
Q ss_pred EEE
Q 000266 514 LLV 516 (1760)
Q Consensus 514 l~v 516 (1760)
+.+
T Consensus 213 ~~~ 215 (215)
T cd00714 213 AVI 215 (215)
T ss_pred EeC
Confidence 864
|
This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin. |
| >PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-20 Score=240.59 Aligned_cols=210 Identities=18% Similarity=0.163 Sum_probs=160.8
Q ss_pred CcEEEEEecC-CeE-EEE--cccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCcee------eecccc
Q 000266 284 KDFYICSLSS-RTV-VYK--GQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRI------LGHNGE 353 (1760)
Q Consensus 284 ~~~yI~SlS~-~ti-vyK--G~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr~------laHNGE 353 (1760)
+.++|++.++ +.+ ++| |.|+++++++...-+|.+..+.++++|+|+||||.+.+++.|+|||.. ++|||+
T Consensus 53 ds~Gia~~~~~~~~~~~k~~g~g~v~~~~~~~~~~~~~~~~~~~~~igH~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~ 132 (640)
T PTZ00295 53 DSCGISTISSGGELKTTKYASDGTTSDSIEILKEKLLDSHKNSTIGIAHTRWATHGGKTDENAHPHCDYKKRIALVHNGT 132 (640)
T ss_pred CeeEEEEEeCCCcEEEEEeCCCCchHHHHHHHHHHhhcCCCCCcEEEEEeccccCCCCCcCCCCCCCCCCCCEEEEEEEE
Confidence 4688998764 445 888 999999997664313322257899999999999999999999999963 799999
Q ss_pred ccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCC
Q 000266 354 INTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMD 433 (1760)
Q Consensus 354 Int~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~ 433 (1760)
|.|+..+|+.+..+ +. .+.+.||||++.++++.....|.++.+|+..++
T Consensus 133 I~N~~~Lr~~L~~~-------------------g~-~f~s~tDsEvi~~li~~~~~~g~~~~~a~~~~~----------- 181 (640)
T PTZ00295 133 IENYVELKSELIAK-------------------GI-KFRSETDSEVIANLIGLELDQGEDFQEAVKSAI----------- 181 (640)
T ss_pred EcCHHHHHHHHHHC-------------------CC-cccCCChHHHHHHHHHHHHhcCCCHHHHHHHHH-----------
Confidence 99998888766432 22 247899999999998865556668888888653
Q ss_pred HHHHHHHHHHHhccCCCCCCcEEEecC---CceEEEccCCCCCCCceEEEEeCCEEEEEeccccccCCCCcEEEccccCC
Q 000266 434 PQRKALYEYFSALMEPWDGPALISFTD---GRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNP 510 (1760)
Q Consensus 434 ~e~rafYey~s~lmepwdGPa~iv~td---G~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~galdi~~~~vv~kgrl~P 510 (1760)
+.++|.|++++.| ++.+.++||+ ||| |++..++.+++|||.++++....+++ +|+|
T Consensus 182 --------------~~l~G~~a~~~~~~~~~~~l~~~Rd~---~PL-~~g~~~~~~~~aSE~~al~~~~~~~~---~l~p 240 (640)
T PTZ00295 182 --------------SRLQGTWGLCIIHKDNPDSLIVARNG---SPL-LVGIGDDSIYVASEPSAFAKYTNEYI---SLKD 240 (640)
T ss_pred --------------HHhhhhceEEEEEeCCCCEEEEEECC---Cce-EEEEcCceEEEEechHHHHhhCcEEE---EeCC
Confidence 3469998877654 4566778997 999 88887888999999999987777787 5999
Q ss_pred CcEEEEEcCCCEEech-HHH-----HHHHHhcCCcHHHHhh
Q 000266 511 GMMLLVDFEKRIVVDD-EAL-----KQQYSLARPYGEWLQR 545 (1760)
Q Consensus 511 Geml~vd~~~g~i~~~-~ei-----k~~~a~~~py~~wl~~ 545 (1760)
||++.|+.++=++++. .++ ...-+.+-+|..|..+
T Consensus 241 Gei~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~m~k 281 (640)
T PTZ00295 241 GEIAELSLENVNDLYTQRRVEKIPEEVIEKSPEPYPHWTLK 281 (640)
T ss_pred CeEEEEECCeEEEEecCCceEEecCChhhhcCCCchHHHHH
Confidence 9999998655455441 122 2345667888888766
|
|
| >cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase) | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.4e-20 Score=203.15 Aligned_cols=178 Identities=35% Similarity=0.352 Sum_probs=139.9
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCce------eeeccccccC
Q 000266 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMR------ILGHNGEINT 356 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr------~laHNGEInt 356 (1760)
+.++|+..+.... .+|..+.+.++... ...+.+.+.++|+|+|++|++.+++.++|||. +++|||+|+|
T Consensus 33 dg~Gi~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~H~R~at~g~~~~~n~hPf~~~~~~~~~~hNG~i~n 108 (220)
T cd00352 33 DGAGIAVYDGDGLFVEKRAGPVSDVALD----LLDEPLKSGVALGHVRLATNGLPSEANAQPFRSEDGRIALVHNGEIYN 108 (220)
T ss_pred ccCCeEEECCCceEEEEeccchhhhhhh----hhhhccCCCEEEEEeEeeecCCCCCCCCCCcCcCCCCEEEEECcEEEc
Confidence 3567777776655 88888888666433 23477899999999999999999999999997 4699999999
Q ss_pred hhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHHH
Q 000266 357 LRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQR 436 (1760)
Q Consensus 357 ~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e~ 436 (1760)
++.+++++..+. ..+.+.||||++.+++..+.+.+. +.+|+..++
T Consensus 109 ~~~l~~~l~~~~--------------------~~~~~~tDse~i~~~~~~~~~~~~-~~~~~~~~~-------------- 153 (220)
T cd00352 109 YRELREELEARG--------------------YRFEGESDSEVILHLLERLGREGG-LFEAVEDAL-------------- 153 (220)
T ss_pred HHHHHHHHHHCC--------------------CeecCCCHHHHHHHHHHHHhccCC-HHHHHHHHH--------------
Confidence 998888775321 123679999999998876554433 677777654
Q ss_pred HHHHHHHHhccCCCCCCcEEEecCC--ceEEEccCCCCCCCceEEEEe-CCEEEEEeccccccCCCCcEEEccccCCCcE
Q 000266 437 KALYEYFSALMEPWDGPALISFTDG--RYLGATLDRNGLRPGRFYITH-SGRVIMASEVGVVDIPPEDVLRKGRLNPGMM 513 (1760)
Q Consensus 437 rafYey~s~lmepwdGPa~iv~tdG--~~igA~lDrnGLRPlr~~~t~-d~~~i~ASE~galdi~~~~vv~kgrl~PGem 513 (1760)
+.++|++++++.|+ +.+.+.||+.|+||+ |+... ++.+++|||.+++...+.+-+ .+|.||++
T Consensus 154 -----------~~~~G~~~~~~~d~~~~~l~~~rd~~G~~pL-~~~~~~~~~~~~aSe~~~~~~~~~~~~--~~l~~g~~ 219 (220)
T cd00352 154 -----------KRLDGPFAFALWDGKPDRLFAARDRFGIRPL-YYGITKDGGLVFASEPKALLALPFKGV--RRLPPGEL 219 (220)
T ss_pred -----------HhCCccEEEEEEECCCCEEEEEECCCCCCCe-EEEEeCCCeEEEEecHHHHhhcCcccE--EECCCCCC
Confidence 23699999999998 888889999999999 78887 889999999999975442233 37999997
Q ss_pred E
Q 000266 514 L 514 (1760)
Q Consensus 514 l 514 (1760)
+
T Consensus 220 ~ 220 (220)
T cd00352 220 L 220 (220)
T ss_pred C
Confidence 4
|
The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format |
| >TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing) | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.4e-20 Score=232.36 Aligned_cols=185 Identities=21% Similarity=0.206 Sum_probs=147.0
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCce------eeeccccccC
Q 000266 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMR------ILGHNGEINT 356 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr------~laHNGEInt 356 (1760)
+.++|++.+++.+ ++|+.|++.++++.. ++ +.+.+.++|+|+||||++.+++.++|||. .++|||||+|
T Consensus 29 ds~Gi~~~~~~~~~~~k~~g~~~~~~~~~--~~--~~~~~~~~igH~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N 104 (607)
T TIGR01135 29 DSAGIAVVDEGKLFVRKAVGKVQELANKL--GE--KPLPGGVGIGHTRWATHGKPTEENAHPHTDEGGRIAVVHNGIIEN 104 (607)
T ss_pred ccceEEEEeCCEEEEEECCcCHHHHHhhh--hc--ccCCccEEEEEeeccCCCCCCccCCCCcCcCCCCEEEEEecccCC
Confidence 4578888776666 999999999997643 23 46789999999999999998899999996 4799999999
Q ss_pred hhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHHH
Q 000266 357 LRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQR 436 (1760)
Q Consensus 357 ~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e~ 436 (1760)
+..+++.+..+ +. .+.+.||||++.++++.+...|.++.+|+..++
T Consensus 105 ~~~Lr~~L~~~-------------------g~-~~~~~tDsEvi~~l~~~~~~~~~~~~~ai~~~~-------------- 150 (607)
T TIGR01135 105 YAELREELEAR-------------------GH-VFVSDTDTEVIAHLIEEYLREGGDLLEAVQKAL-------------- 150 (607)
T ss_pred HHHHHHHHHhC-------------------CC-ccccCCHHHHHHHHHHHHHhcCCCHHHHHHHHH--------------
Confidence 98887765432 22 247899999999998865555668888888653
Q ss_pred HHHHHHHHhccCCCCCCcEEEecC---CceEEEccCCCCCCCceEEEEeCCEEEEEeccccccCCCCcEEEccccCCCcE
Q 000266 437 KALYEYFSALMEPWDGPALISFTD---GRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMM 513 (1760)
Q Consensus 437 rafYey~s~lmepwdGPa~iv~td---G~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~galdi~~~~vv~kgrl~PGem 513 (1760)
+.++|.|++++.| ++.+.++||+ ||| |++.+++.+++|||.++|.....+++ .|+|||+
T Consensus 151 -----------~~l~G~~a~~i~~~~~~~~l~~~Rd~---~PL-~~~~~~~~~~~aSE~~al~~~~~~~~---~l~pg~~ 212 (607)
T TIGR01135 151 -----------KQLRGAYALAVLHADHPETLVAARSG---SPL-IVGLGDGENFVASDVTALLPVTRRVI---YLEDGDI 212 (607)
T ss_pred -----------HHhcCceEEEEEecCCCCEEEEEECC---Cce-EEEECCCeEEEEEChHHHHhhCCEEE---EeCCCeE
Confidence 4469999877754 3546668995 999 88888889999999999975556665 7999999
Q ss_pred EEEEcCCCEEe
Q 000266 514 LLVDFEKRIVV 524 (1760)
Q Consensus 514 l~vd~~~g~i~ 524 (1760)
+.++.++-+++
T Consensus 213 ~~~~~~~~~~~ 223 (607)
T TIGR01135 213 AILTRDGVRIY 223 (607)
T ss_pred EEEECCeeEEE
Confidence 99987654554
|
The member from Methanococcus jannaschii contains an intein. |
| >PLN02981 glucosamine:fructose-6-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-19 Score=231.23 Aligned_cols=188 Identities=16% Similarity=0.155 Sum_probs=142.3
Q ss_pred CcEEEEEecCCe-----E-EEEccc----chhchhh---hhcccCC-CCCccccEEEEeecccCCCCCCCCCCCCce---
Q 000266 284 KDFYICSLSSRT-----V-VYKGQL----KPIQMKD---YYYADLG-NERFTSYMALIHSRFSTNTFPSWDRAQPMR--- 346 (1760)
Q Consensus 284 ~~~yI~SlS~~t-----i-vyKG~g----~~~qv~~---~y~~DL~-~~~~~s~~ai~H~RySTNT~psw~~AQPfr--- 346 (1760)
+.++|+..++++ + ++|++| ++.+++. . . +|. +..+.++++|||+||||++.+++.++|||.
T Consensus 36 dsaGia~~~~~~~~~~~~~~~k~~G~~~~l~~~~~~~~~~-~-~l~~~~~~~g~~~IGH~R~at~g~~~~~n~qP~~~~~ 113 (680)
T PLN02981 36 DSAGIAIDNDPSLESSSPLVFREEGKIESLVRSVYEEVAE-T-DLNLDLVFENHAGIAHTRWATHGPPAPRNSHPQSSGP 113 (680)
T ss_pred ccceEEEEcCCcccccceEEEEcCCCHHHHHHHHhhhccc-c-ccccccCCCCcEEEEEcccccCCCCCcCCCCCcccCC
Confidence 468999877652 5 999999 7777742 2 2 342 336789999999999999999999999995
Q ss_pred ----eeeccccccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHc-----C-CCHHH
Q 000266 347 ----ILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRA-----G-RSLPE 416 (1760)
Q Consensus 347 ----~laHNGEInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~-----g-~sl~e 416 (1760)
.++|||+|+|++..++.+. +.+.. +.+.||||++.++++...+. + .++++
T Consensus 114 ~~~ialvhNG~I~N~~eLr~~L~-------------------~~G~~-f~s~tDtEvi~~li~~~~~~~~~~~~~~~~~~ 173 (680)
T PLN02981 114 GNEFLVVHNGIITNYEVLKETLL-------------------RHGFT-FESDTDTEVIPKLAKFVFDKLNEEEGDVTFSQ 173 (680)
T ss_pred CCcEEEEECceEecHHHHHHHHH-------------------hCCCe-eccCCHHHHHHHHHHHHHHhcccccCCCCHHH
Confidence 3699999998887776553 33333 57899999999998865542 2 37888
Q ss_pred HHHHcCccccccCCCCCHHHHHHHHHHHhccCCCCCCcEEEecC---CceEEEccCCCCCCCceEEEEeC----------
Q 000266 417 AVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTD---GRYLGATLDRNGLRPGRFYITHS---------- 483 (1760)
Q Consensus 417 Ai~~~iPeaw~~~~~m~~e~rafYey~s~lmepwdGPa~iv~td---G~~igA~lDrnGLRPlr~~~t~d---------- 483 (1760)
|++.+ ++.++|.|++++.+ ...+.|+||+ ||| +++..+
T Consensus 174 a~~~~-------------------------~~~l~G~ya~~i~~~~~~~~i~~~r~~---~PL-~iG~~~~~~~~~~~~~ 224 (680)
T PLN02981 174 VVMEV-------------------------MRQLEGAYALIFKSPHYPNELVACKRG---SPL-LLGVKELPEEKNSSAV 224 (680)
T ss_pred HHHHH-------------------------HHhccCccceEEEecCCCCeEEEEecC---Cce-EEEecCcccccccccc
Confidence 88765 34579999877655 4555558996 999 677653
Q ss_pred --------------CEEEEEeccccccCCCCcEEEccccCCCcEEEEEcCCCEEec
Q 000266 484 --------------GRVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVDFEKRIVVD 525 (1760)
Q Consensus 484 --------------~~~i~ASE~galdi~~~~vv~kgrl~PGeml~vd~~~g~i~~ 525 (1760)
+.|++|||+|+++.....++ .|+|||++.|+.++-++++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~aSe~~al~~~~~~~~---~l~~gei~~i~~~~~~~~~ 277 (680)
T PLN02981 225 FTSEGFLTKNRDKPKEFFLASDASAVVEHTKRVL---VIEDNEVVHLKDGGVGIYK 277 (680)
T ss_pred cccccccccccccCCcEEEEeCHHHHHHhcCEEE---EECCCeEEEEECCeEEEEe
Confidence 36999999999987644443 8999999999976545554
|
|
| >PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-19 Score=229.21 Aligned_cols=186 Identities=19% Similarity=0.181 Sum_probs=147.8
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCce------eeeccccccC
Q 000266 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMR------ILGHNGEINT 356 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr------~laHNGEInt 356 (1760)
+..+|++.++..+ ++|+.|++.++++-+ ++ ..+.+.++|+|+||+|++.++..++|||. .++|||+|+|
T Consensus 30 d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~--~~--~~~~g~~~igH~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N 105 (604)
T PRK00331 30 DSAGIAVLDDGGLEVRKAVGKVANLEAKL--EE--EPLPGTTGIGHTRWATHGKPTERNAHPHTDCSGRIAVVHNGIIEN 105 (604)
T ss_pred CcceEEEEeCCEEEEEECCcCHHHHHhhh--cc--ccCCCcEEEEEEecCCCCCCccccCCccccCCCCEEEEEeEEEcC
Confidence 4567888776656 999999999987643 33 57889999999999999998899999997 3799999999
Q ss_pred hhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHHH
Q 000266 357 LRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQR 436 (1760)
Q Consensus 357 ~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e~ 436 (1760)
+...++.+.. .+.. +.+.||||++.++++...+.|.++.+|+..++
T Consensus 106 ~~~Lr~~l~~-------------------~g~~-~~~~sDsEvi~~l~~~~~~~g~~~~~a~~~~~-------------- 151 (604)
T PRK00331 106 YAELKEELLA-------------------KGHV-FKSETDTEVIAHLIEEELKEGGDLLEAVRKAL-------------- 151 (604)
T ss_pred HHHHHHHHHh-------------------CCCc-ccCCCHHHHHHHHHHHHHhhCCCHHHHHHHHH--------------
Confidence 8877765532 2222 46899999999998866566779999988663
Q ss_pred HHHHHHHHhccCCCCCCcEEEecC---CceEEEccCCCCCCCceEEEEeCCEEEEEeccccccCCCCcEEEccccCCCcE
Q 000266 437 KALYEYFSALMEPWDGPALISFTD---GRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMM 513 (1760)
Q Consensus 437 rafYey~s~lmepwdGPa~iv~td---G~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~galdi~~~~vv~kgrl~PGem 513 (1760)
+.++|.|++++.| +..+.++||+ ||| |++.+++.+++|||.++|...+.++. .|+|||+
T Consensus 152 -----------~~l~G~~a~~~~d~~~~~~l~~~Rd~---~PL-~~g~~~~~~~~aSE~~al~~~~~~~~---~l~pg~~ 213 (604)
T PRK00331 152 -----------KRLEGAYALAVIDKDEPDTIVAARNG---SPL-VIGLGEGENFLASDALALLPYTRRVI---YLEDGEI 213 (604)
T ss_pred -----------HhccCeeEEEEEecCCCCEEEEEECC---Cce-EEEEcCCeEEEEECHHHHHHhcCEEE---EECCCeE
Confidence 4569999888876 4556668996 999 88888889999999999976666664 8999999
Q ss_pred EEEEcCCCEEec
Q 000266 514 LLVDFEKRIVVD 525 (1760)
Q Consensus 514 l~vd~~~g~i~~ 525 (1760)
+.|+.++=++++
T Consensus 214 ~~i~~~~~~~~~ 225 (604)
T PRK00331 214 AVLTRDGVEIFD 225 (604)
T ss_pred EEEECCeEEEEe
Confidence 999865434443
|
|
| >COG2218 FwdC Formylmethanofuran dehydrogenase subunit C [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-19 Score=198.75 Aligned_cols=146 Identities=25% Similarity=0.411 Sum_probs=125.1
Q ss_pred cCCCCCccEEEEEecCccchhhhcCCCCcEEEEEecCCchhhcCCCCceEEEeCCCCCCCCCCccccchhhh---hccCc
Q 000266 1421 LVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVA---LYGAT 1497 (1760)
Q Consensus 1421 ~~gl~~~~i~i~~~G~aGq~~Gaf~~~G~~i~v~G~A~DyvGkgmsGG~IvV~g~~~~~~~~~~~~i~Gn~~---~yGat 1497 (1760)
..+|+.+.|. ++|++|.++|+.| +|++|+|+|||.||+|..|.||.|.|+||++.. +|+.. ..||+
T Consensus 80 G~~M~aGeI~--V~GdVg~~~G~~M-kgGkI~V~G~a~sw~G~Em~gge~~i~gna~dy--------Vg~~YRge~rgm~ 148 (264)
T COG2218 80 GERMSAGEII--VEGDVGMHVGAGM-KGGKIVVNGNADSWAGIEMKGGEIKIFGNAGDY--------VGCAYRGEWRGMS 148 (264)
T ss_pred cccccccEEE--Eeccccceeeeee-eccEEEEeCCCCCcccceeeCCeEEEeechHHh--------ccceeecccccCc
Confidence 3457778755 5899999999999 888999999999999999999999999995321 23211 35999
Q ss_pred ccEEEEecccccccccccCCcEEEEcC-CCccccccccCcEEEEeCCCCCcccCCCcceEEEEEcCCchhhcccCcccee
Q 000266 1498 SGEAYFNGMAAERFCVRNSGARAVVEG-VGDHGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYVLDVDGKFRSRCNPELVD 1576 (1760)
Q Consensus 1498 gG~i~v~G~aGeR~gvr~sG~~iVV~G-~Gd~~~eyMtgG~ivVlG~~G~~~gagM~gG~iyv~~~~~~~~~~~n~~~V~ 1576 (1760)
||+|.|+||||.-.|..|++|.|.|+| +|.++|-.|.||+|+|-|++++..|..|.+|+|.|.|..++|..-...+-|.
T Consensus 149 Gg~Iiv~Gna~~~iG~~M~~G~I~V~GdaG~~~Gi~~nGGtIII~Gd~~~~~G~eM~~G~IvV~G~~~~~Lp~fk~~g~~ 228 (264)
T COG2218 149 GGKIIVEGNAGNSIGELMRGGEIIVKGDAGKFTGIHMNGGTIIIEGDAGDFVGGEMKGGTIVVDGKAGEFLPGFKREGVE 228 (264)
T ss_pred CCEEEEecCcccchhhhccCcEEEEecccccceeeEecCCEEEEECCcCccccceeeCcEEEEccCHHHhCccceeeeeE
Confidence 999999999999999999999999999 6999999999999999999999999999999999999887775544334343
Q ss_pred e
Q 000266 1577 L 1577 (1760)
Q Consensus 1577 l 1577 (1760)
.
T Consensus 229 ~ 229 (264)
T COG2218 229 E 229 (264)
T ss_pred e
Confidence 3
|
|
| >TIGR03122 one_C_dehyd_C formylmethanofuran dehydrogenase subunit C | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.2e-19 Score=201.30 Aligned_cols=127 Identities=27% Similarity=0.359 Sum_probs=116.1
Q ss_pred ccEEEEEecCc--cchhhhcCCCCcEEEEEecCCchhhcCCCCceEEEeCCCCCCCCCCccccchhhhhccCcccEEEEe
Q 000266 1427 DTIHIKLTGSA--GQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATSGEAYFN 1504 (1760)
Q Consensus 1427 ~~i~i~~~G~a--Gq~~Gaf~~~G~~i~v~G~A~DyvGkgmsGG~IvV~g~~~~~~~~~~~~i~Gn~~~yGatgG~i~v~ 1504 (1760)
+..+|.|+|+. =.++|+.|. .++|+|+||+++|+|.+|+||+|+|+|| +|+.++..|+||+|.|+
T Consensus 58 ~~~~l~i~g~~~r~~~IG~~m~-~g~I~v~G~~G~~~G~~M~gG~I~V~G~------------ag~~~G~~m~GG~I~V~ 124 (260)
T TIGR03122 58 DETRLVIDGDTSRVKRIGERMS-AGEIVVEGDVGMHVGAEMKGGKIVVNGN------------ADSWLGCEMKGGEIEVK 124 (260)
T ss_pred CceEEEEECCCccCCeeeCCCC-CCEEEEEccchhHHhccCCCCEEEEEec------------CchhhhCcccCCEEEEE
Confidence 34467888986 378999995 5599999999999999999999999999 78899999999999999
Q ss_pred ccccccccc-------ccCCcEEEEcC-CCccccccccCcEEEEeCCCCCcccCCCcceEEEEEcCCchh
Q 000266 1505 GMAAERFCV-------RNSGARAVVEG-VGDHGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYVLDVDGKF 1566 (1760)
Q Consensus 1505 G~aGeR~gv-------r~sG~~iVV~G-~Gd~~~eyMtgG~ivVlG~~G~~~gagM~gG~iyv~~~~~~~ 1566 (1760)
||||+++|. -|+||+|+|+| +|+++|++|.||+|+|+|++|.++|..|.||+|+|.+..+.+
T Consensus 125 GnAg~~~G~~~~G~~~gM~GG~I~V~GnaG~~~G~~M~gG~iiV~G~aG~~~G~~M~gG~ivV~G~~g~~ 194 (260)
T TIGR03122 125 GNAGDYVGSAYRGEWRGMSGGKIIVEGNAGDYLGERMRGGEILIEGNAGIFAGIHMNGGTIIIDGDVGRR 194 (260)
T ss_pred CCCcccccceeecccccccCCEEEEEechhHhhhhhccCcEEEEeeecccceeccccCCEEEEecccCcc
Confidence 999999995 39999999999 599999999999999999999999999999999999977654
|
Members of this largely archaeal protein family are subunit C of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdC) from molybdenum-containing (FmdC) forms of this enzyme. |
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-17 Score=196.13 Aligned_cols=268 Identities=15% Similarity=0.095 Sum_probs=176.8
Q ss_pred CCCCCCCCCCCCcccccc-----ceEecCCCcccCcHHHHHHHHHHHHHcCCceeccCCCCCccccCcCCCCCCchhhhh
Q 000266 992 ADVKIPLEEVEPASEIVK-----RFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRSA 1066 (1760)
Q Consensus 992 ~~~~i~~~eVe~~t~i~~-----Pf~i~aMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGge~~e~~~~~~~g~~~~~~s~ 1066 (1760)
..+.+++++||.++++.+ ||+++||. ...++.||++|++.|..+..=- .++|+.. +.
T Consensus 16 ~lp~~s~~dvdlst~~~~~~l~~P~~inAM~-----t~iN~~LA~~a~~~G~~~~~~k--~~~e~~~-----------~~ 77 (326)
T PRK05458 16 KCIVNSRSECDTSVTLGPRTFKLPVVPANMQ-----TIIDEKIAEWLAENGYFYIMHR--FDPEARI-----------PF 77 (326)
T ss_pred CCCCCCHHHcccceEECCcEecCcEEEeccc-----chhHHHHHHHHHHcCCEEEEec--CCHHHHH-----------HH
Confidence 467899999999999864 99999995 3888999999999988766533 2444321 22
Q ss_pred eeecccCC------cCCChhhhcCchhHHHhhhccCCCCCCCCCCCccchHHHHHHhCCCCcccccC-CCCCCCCCCHHH
Q 000266 1067 IKQVASGR------FGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLIS-PPPHHDIYSIED 1139 (1760)
Q Consensus 1067 IkQvasgr------FGVt~~~L~~a~~iqIKiaQGAKpGeGG~Lpg~KV~~~IA~~R~~~pG~~lis-P~~hhDiySied 1139 (1760)
++++.+.. -|++++++..++++ .....|.+.+. ...|++ .+.
T Consensus 78 ~r~~~~~~l~v~~~vg~~~~~~~~~~~L----------------------------v~ag~~~d~i~iD~a~gh---~~~ 126 (326)
T PRK05458 78 IKDMHEQGLIASISVGVKDDEYDFVDQL----------------------------AAEGLTPEYITIDIAHGH---SDS 126 (326)
T ss_pred HHhccccccEEEEEecCCHHHHHHHHHH----------------------------HhcCCCCCEEEEECCCCc---hHH
Confidence 23333221 12233332222211 11111112221 111111 245
Q ss_pred HHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCC--HHHHHHHHHHHHH
Q 000266 1140 LAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLP--WELGLAETHQTLV 1217 (1760)
Q Consensus 1140 LaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP--~~~~Laev~q~L~ 1217 (1760)
+.++|.++|+.+|+.||++|.+. ....|..+.++|||+|.|++++|....... ....+.| .+.+++++.+.+
T Consensus 127 ~~e~I~~ir~~~p~~~vi~g~V~---t~e~a~~l~~aGad~i~vg~~~G~~~~t~~--~~g~~~~~w~l~ai~~~~~~~- 200 (326)
T PRK05458 127 VINMIQHIKKHLPETFVIAGNVG---TPEAVRELENAGADATKVGIGPGKVCITKI--KTGFGTGGWQLAALRWCAKAA- 200 (326)
T ss_pred HHHHHHHHHhhCCCCeEEEEecC---CHHHHHHHHHcCcCEEEECCCCCccccccc--ccCCCCCccHHHHHHHHHHHc-
Confidence 77889999999999999998653 356778899999999999887664422211 1233456 445677777652
Q ss_pred hCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhh----------
Q 000266 1218 ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREK---------- 1287 (1760)
Q Consensus 1218 ~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~---------- 1287 (1760)
++|||++|||+++.||+||+++||++|++|++++-+- ..|-.+...+..+.+.
T Consensus 201 ------~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~~~-----------espg~~~~~~g~~~k~y~g~~~~~~~ 263 (326)
T PRK05458 201 ------RKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHE-----------ESPGKTVEIDGKLYKEYFGSASEFQK 263 (326)
T ss_pred ------CCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcCCc-----------cCCCceeeecchhHHHhhCcHhhhcc
Confidence 4899999999999999999999999999999887432 2222222222221111
Q ss_pred ----cCCCHH-------HHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCceeeccc
Q 000266 1288 ----FAGEPE-------HVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVDK 1332 (1760)
Q Consensus 1288 ----~~g~~e-------~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~dLl~~~~ 1332 (1760)
+..+.+ ++.+++..+..+||..|..+|++++.||. +.+++..+.
T Consensus 264 ~~~~~~eG~e~~v~~~G~l~~~l~~l~~gLr~~m~~~Ga~~i~el~-~~~~v~~~~ 318 (326)
T PRK05458 264 GEYKNVEGKKILVPHKGSLKDTLTEMEQDLQSSISYAGGRDLDAIR-KVDYVIVKN 318 (326)
T ss_pred ccccccCCceEEecccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHh-cCCEEEEec
Confidence 112233 68999999999999999999999999996 588777653
|
|
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-17 Score=194.74 Aligned_cols=266 Identities=15% Similarity=0.129 Sum_probs=177.5
Q ss_pred CCCCCCCCCCCCcccccc-----ceEecCCCcccCcHHHHHHHHHHHHHcCCceeccCCCCCccccCcCCCCCCchhhhh
Q 000266 992 ADVKIPLEEVEPASEIVK-----RFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRSA 1066 (1760)
Q Consensus 992 ~~~~i~~~eVe~~t~i~~-----Pf~i~aMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGge~~e~~~~~~~g~~~~~~s~ 1066 (1760)
..+.+++++||+++++.+ ||++++|. ...++.||++|++.|..+..-. .++|+.. +.
T Consensus 13 ~lp~~s~~dVdlst~~~~~~l~~P~~inAM~-----t~in~~LA~~a~~~G~~~i~hK--~~~E~~~-----------sf 74 (321)
T TIGR01306 13 KCIVNSRSECDTSVTLGKHKFKLPVVPANMQ-----TIIDEKLAEQLAENGYFYIMHR--FDEESRI-----------PF 74 (321)
T ss_pred CCCCCCHHHceeeEEECCcEecCcEEeeccc-----hhhhHHHHHHHHHcCCEEEEec--CCHHHHH-----------HH
Confidence 467888999999999864 99999995 3889999999999999877755 3555432 12
Q ss_pred eeecccCC------cCCChhhhcCchhHHHhhhccCCCCCCCCCCCccchHHHHHHhCCCCccccc---CCCCCCCCCCH
Q 000266 1067 IKQVASGR------FGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLI---SPPPHHDIYSI 1137 (1760)
Q Consensus 1067 IkQvasgr------FGVt~~~L~~a~~iqIKiaQGAKpGeGG~Lpg~KV~~~IA~~R~~~pG~~li---sP~~hhDiySi 1137 (1760)
++++.+.. -|++++.+.....+ +.+| ...+.+ +..+| |
T Consensus 75 vrk~k~~~L~v~~SvG~t~e~~~r~~~l---v~a~-------------------------~~~d~i~~D~ahg~----s- 121 (321)
T TIGR01306 75 IKDMQERGLFASISVGVKACEYEFVTQL---AEEA-------------------------LTPEYITIDIAHGH----S- 121 (321)
T ss_pred HHhccccccEEEEEcCCCHHHHHHHHHH---HhcC-------------------------CCCCEEEEeCccCc----h-
Confidence 33332221 13333332221111 1111 001111 11222 1
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCC--HHHHHHHHHHH
Q 000266 1138 EDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLP--WELGLAETHQT 1215 (1760)
Q Consensus 1138 edLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP--~~~~Laev~q~ 1215 (1760)
+.+.+.|++||+.+|...|+++.+ +....|..+.++|||+|.|+.+.|++.+++.. ...|.| .+.++.++.++
T Consensus 122 ~~~~~~i~~i~~~~p~~~vi~GnV---~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~--~g~g~~~~~l~ai~ev~~a 196 (321)
T TIGR01306 122 NSVINMIKHIKTHLPDSFVIAGNV---GTPEAVRELENAGADATKVGIGPGKVCITKIK--TGFGTGGWQLAALRWCAKA 196 (321)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecC---CCHHHHHHHHHcCcCEEEECCCCCccccceee--eccCCCchHHHHHHHHHHh
Confidence 346677999999886544555533 45678889999999999999777888877754 223443 56788888875
Q ss_pred HHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcCC-----
Q 000266 1216 LVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAG----- 1290 (1760)
Q Consensus 1216 L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g----- 1290 (1760)
. ++|||+||||+++.||+||+++|||+|++|+.+-- |. .+|-.+...+..+.|.|.|
T Consensus 197 ~-------~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag---~~--------Espg~~~~~~g~~~k~y~g~~~~~ 258 (321)
T TIGR01306 197 A-------RKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAG---HE--------ESPGETVEKDGKLYKEYFGSASEF 258 (321)
T ss_pred c-------CCeEEEECCcCcHHHHHHHHHcCCCEEeechhhcC---cc--------cCCCceEeeCCeEHhhhcCchhhh
Confidence 2 58999999999999999999999999999987542 22 2333322222211111110
Q ss_pred ----------------CHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCceeeccc
Q 000266 1291 ----------------EPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVDK 1332 (1760)
Q Consensus 1291 ----------------~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~dLl~~~~ 1332 (1760)
....|.+++..+...||..|..+|+++|.||. +.+++..+.
T Consensus 259 ~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~~~G~~~l~~~~-~~~~~~~~~ 315 (321)
T TIGR01306 259 QKGEHKNVEGKKMFVEHKGSLSDTLIEMQQDLQSSISYAGGKDLDSLR-TVDYVIVKN 315 (321)
T ss_pred cccccccccceEEEeccCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHh-hCCEEEEec
Confidence 01238889999999999999999999999994 788887653
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=189.72 Aligned_cols=291 Identities=17% Similarity=0.184 Sum_probs=177.9
Q ss_pred cccccccccCCCCCCCCCCCCcccccc------ceEecCCCcccCcHHHHHHHHHHHHHcCCceeccCCCCCccccCcCC
Q 000266 983 LRGLLKFKEADVKIPLEEVEPASEIVK------RFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLS 1056 (1760)
Q Consensus 983 ~r~ll~~~~~~~~i~~~eVe~~t~i~~------Pf~i~aMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGge~~e~~~~~~ 1056 (1760)
+-+++ +.+.+..++.++||.++.|.+ ||+.+||...+- ..||+++.++|+...... .++++++.
T Consensus 4 ~ddv~-l~p~~~~~~~~~vdl~t~l~~~~~l~~Piv~apM~~vt~-----~~ma~ava~~GglGvi~~-~~~~~~~~--- 73 (325)
T cd00381 4 FDDVL-LVPGYSTVLPSEVDLSTKLTKNITLNIPLVSAPMDTVTE-----SEMAIAMARLGGIGVIHR-NMSIEEQA--- 73 (325)
T ss_pred cccEE-EeCCCCCCCHHHceeeEEecCccccCCCEEecCCCcCCc-----HHHHHHHHHCCCEEEEeC-CCCHHHHH---
Confidence 34444 444556777889998888753 999999986542 259999999999877653 34555442
Q ss_pred CCCCchhhhheeecccCCcCCChhhhcCchhHHHhhhccCCCCCCCCCCCccchHHHHHHhCCCCcccccCCCCCCCCCC
Q 000266 1057 DGSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHHDIYS 1136 (1760)
Q Consensus 1057 ~g~~~~~~s~IkQvasgrFGVt~~~L~~a~~iqIKiaQGAKpGeGG~Lpg~KV~~~IA~~R~~~pG~~lisP~~hhDiyS 1136 (1760)
..++++- +++.+....-.+.+ ..+.+..+. ..|+..|.-...|. +
T Consensus 74 --------~~i~~vk-~~l~v~~~~~~~~~----------------------~~~~~~~l~--eagv~~I~vd~~~G--~ 118 (325)
T cd00381 74 --------EEVRKVK-GRLLVGAAVGTRED----------------------DKERAEALV--EAGVDVIVIDSAHG--H 118 (325)
T ss_pred --------HHHHHhc-cCceEEEecCCChh----------------------HHHHHHHHH--hcCCCEEEEECCCC--C
Confidence 1222221 22222110000000 001111111 12333221000110 1
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHH
Q 000266 1137 IEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTL 1216 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L 1216 (1760)
.+.+.+.|+++|+..|++||++..+ .....|..+.++|||+|+|.+..|..+..+ ...++|.|...+|+++.+++
T Consensus 119 ~~~~~~~i~~ik~~~p~v~Vi~G~v---~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~--~~~g~g~p~~~~i~~v~~~~ 193 (325)
T cd00381 119 SVYVIEMIKFIKKKYPNVDVIAGNV---VTAEAARDLIDAGADGVKVGIGPGSICTTR--IVTGVGVPQATAVADVAAAA 193 (325)
T ss_pred cHHHHHHHHHHHHHCCCceEEECCC---CCHHHHHHHHhcCCCEEEECCCCCcCcccc--eeCCCCCCHHHHHHHHHHHH
Confidence 2467788999999887788877433 334667889999999999965433323222 23567899999999999887
Q ss_pred HhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccc---cccccCCCCCcccccChhhH--------
Q 000266 1217 VANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMM---RKCHKNTCPVGIATQDPVLR-------- 1285 (1760)
Q Consensus 1217 ~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~---r~ch~~~cP~giatqdp~Lr-------- 1285 (1760)
... ++|||++|||+++.||+||+++||++|++||.|+.+..|..- +.-+.-..-.|.++.....+
T Consensus 194 ~~~----~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t~Es~g~~~~~~g~~~~~~~g~~s~~~~~~~~~~~~~~ 269 (325)
T cd00381 194 RDY----GVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEYIEINGKRYKEYRGMGSLGAMKKGGGDRYFG 269 (325)
T ss_pred hhc----CCcEEecCCCCCHHHHHHHHHcCCCEEEecchhcccccCCCcEEEECCeeeeeEecccchhhhhcCccccccc
Confidence 543 589999999999999999999999999999999886544310 00000011111111111110
Q ss_pred ----hhcCCC-------HHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCce
Q 000266 1286 ----EKFAGE-------PEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDM 1327 (1760)
Q Consensus 1286 ----~~~~g~-------~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~dL 1327 (1760)
.+...+ +-.|.+++..+...||..|..+|+++|.||..+..+
T Consensus 270 ~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~y~G~~~l~~~~~~~~~ 322 (325)
T cd00381 270 EEAKKLVPEGVEGIVPYKGSVKDVLPQLVGGLRSSMGYCGAKSLKELQEKARF 322 (325)
T ss_pred cccccccCCceEEEEecCCcHHHHHHHHHHHHHHHHHhcCCCcHHHHHhcCeE
Confidence 001111 234889999999999999999999999999665543
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >cd00981 arch_gltB Archaeal-type gltB domain | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.8e-18 Score=189.39 Aligned_cols=121 Identities=21% Similarity=0.251 Sum_probs=113.4
Q ss_pred EEEEecCccchhhhcCC-CCcEEEEEecCCchhhcCCCCceEEEeCCCCCCCCCCccccchhhhhccCcccEEEEecccc
Q 000266 1430 HIKLTGSAGQSVGAFLC-PGILLELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATSGEAYFNGMAA 1508 (1760)
Q Consensus 1430 ~i~~~G~aGq~~Gaf~~-~G~~i~v~G~A~DyvGkgmsGG~IvV~g~~~~~~~~~~~~i~Gn~~~yGatgG~i~v~G~aG 1508 (1760)
.|.|+++.||.+....+ +.++|+|+|++++++|..|+||+|+|+|+ +|+.++.+|+||+|+|+|+||
T Consensus 27 ~~~i~n~~g~~~ig~gl~~~~~I~v~G~aG~~~G~~m~gg~I~v~Gn------------a~d~~G~~m~GG~I~V~G~aG 94 (232)
T cd00981 27 EIVLDNVLGQRYIGDGLPGNVRINIYGVPGNDLGAFMSGPTIIVYGN------------AQDDVGNTMNDGKIVIHGSAG 94 (232)
T ss_pred eEEEECCCCceecccCCCCCEEEEEEecCcHHHHhhcCCCEEEEEec------------chhhhhccccCcEEEEECChH
Confidence 36678999988765544 78899999999999999999999999999 789999999999999999999
Q ss_pred cccccccCCcEEEEcC-CCcccccccc-----CcEEEEeCCCCCcccCCCcceEEEEEcC
Q 000266 1509 ERFCVRNSGARAVVEG-VGDHGCEYMT-----GGTVVVLGKTGRNFAAGMSGGIAYVLDV 1562 (1760)
Q Consensus 1509 eR~gvr~sG~~iVV~G-~Gd~~~eyMt-----gG~ivVlG~~G~~~gagM~gG~iyv~~~ 1562 (1760)
+.+|.-|+||+|+|+| +|+++|.+|. ||+|||.|++|.++|..|.||+|+|.|.
T Consensus 95 ~~~g~~m~GG~i~V~G~aG~r~G~~m~~~~~~gg~ivV~G~aGd~~ge~M~gG~ivV~G~ 154 (232)
T cd00981 95 DVLGYAMRGGKIFIRGNAGYRVGIHMKEYKDKVPVLVIGGTAGDFLGEYMAGGVIIVLGL 154 (232)
T ss_pred HHHHhhCcCcEEEEEecchhhhhhhcccccCCCCEEEEEeccCccccccccCCEEEEECC
Confidence 9999999999999999 5999999999 9999999999999999999999999997
|
This domain shares sequence similarity with a region of unknown function found in the large subunit of glutamate synthase, which is encoded by gltB and found in most bacteria and eukaryotes. It is predicted to be homologous to the C-terminal domain of glutamate synthase based upon sequence similarity coupled with genome organization data, showing that this domain is found in a gene cluster with other domains of Glts, which are annotated. This domain is found primarily in archaea, but is also present in a few bacteria, likely as a result of lateral gene transfer. |
| >PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.6e-17 Score=208.40 Aligned_cols=209 Identities=13% Similarity=0.086 Sum_probs=150.4
Q ss_pred CcEEEEEecC---------------CeE-EEEcccchhchhhh-hccc--CC-----CCCccccEEEEeecccCCCCCCC
Q 000266 284 KDFYICSLSS---------------RTV-VYKGQLKPIQMKDY-YYAD--LG-----NERFTSYMALIHSRFSTNTFPSW 339 (1760)
Q Consensus 284 ~~~yI~SlS~---------------~ti-vyKG~g~~~qv~~~-y~~D--L~-----~~~~~s~~ai~H~RySTNT~psw 339 (1760)
+.++|++..+ +.+ ++|++|++.+|.+. |. + |. +..+.++++|+|+||||.+.+++
T Consensus 36 dsaGia~~~~~~~~~~~~~~~~~~~~~~~~~k~~G~v~~l~~~~~~-~~~~~~~~~~~~~~~g~~~igH~R~at~g~~~~ 114 (670)
T PTZ00394 36 DSAGLAIDANIGSEKEDGTAASAPTPRPCVVRSVGNISQLREKVFS-EAVAATLPPMDATTSHHVGIAHTRWATHGGVCE 114 (670)
T ss_pred ccceEEEecCcccccccccccccCCCcEEEEECCccHHHHHHHHhc-chhhhhccccccCCCCCEEEEEeeceecCCCCc
Confidence 4689998411 335 99999999886442 22 1 11 12578999999999999999999
Q ss_pred CCCCCcee------eeccccccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHH-cCC
Q 000266 340 DRAQPMRI------LGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVR-AGR 412 (1760)
Q Consensus 340 ~~AQPfr~------laHNGEInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~-~g~ 412 (1760)
.++|||.. ++|||+|+|+...++.+.. .+.. |.+.||||++.++++.+.. .|.
T Consensus 115 ~n~qP~~~~~~~i~vvhNG~I~N~~eLr~~L~~-------------------~g~~-f~s~tDtEvi~~li~~~~~~~g~ 174 (670)
T PTZ00394 115 RNCHPQQSNNGEFTIVHNGIVTNYMTLKELLKE-------------------EGYH-FSSDTDTEVISVLSEYLYTRKGI 174 (670)
T ss_pred CCCCCcCCCCCCEEEEECeeEecHHHHHHHHHH-------------------cCCE-ecCCChHHHHHHHHHHHHHhcCC
Confidence 99999964 6999999998877765543 3333 4789999999999986665 354
Q ss_pred -CHHHHHHHcCccccccCCCCCHHHHHHHHHHHhccCCCCCCcEEEec---CCceEEEccCCCCCCCceEEEEeC-----
Q 000266 413 -SLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFT---DGRYLGATLDRNGLRPGRFYITHS----- 483 (1760)
Q Consensus 413 -sl~eAi~~~iPeaw~~~~~m~~e~rafYey~s~lmepwdGPa~iv~t---dG~~igA~lDrnGLRPlr~~~t~d----- 483 (1760)
++.+|+..++ +.++|.|++++. ++..+.|+||+ ||| +++..+
T Consensus 175 ~~~~~a~~~~~-------------------------~~l~G~ya~~i~~~~~~~~l~~~Rd~---~PL-~iG~~~~~~~~ 225 (670)
T PTZ00394 175 HNFADLALEVS-------------------------RMVEGSYALLVKSVYFPGQLAASRKG---SPL-MVGIRRTDDRG 225 (670)
T ss_pred CCHHHHHHHHH-------------------------HHccCceEEEEEecCCCCEEEEEEcC---Cce-EEEeccccccc
Confidence 8888888663 456999876653 24445558999 999 788765
Q ss_pred ----------------CEEEEEeccccccCCCCcEEEccccCCCcEEEEEcCCCEEechH-----HH---------HHHH
Q 000266 484 ----------------GRVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVDFEKRIVVDDE-----AL---------KQQY 533 (1760)
Q Consensus 484 ----------------~~~i~ASE~galdi~~~~vv~kgrl~PGeml~vd~~~g~i~~~~-----ei---------k~~~ 533 (1760)
+.+++|||..++----.+|+ -|++|+++.+..+.=+|++.. .+ ...-
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~aSd~~a~~~~t~~~~---~l~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (670)
T PTZ00394 226 CVMKLQTYDLTDLSGPLEVFFSSDVNSFAEYTREVV---FLEDGDIAHYCDGALRFYNAAERQRSIVKREVQHLDAKPEG 302 (670)
T ss_pred cccccccccccccCCCCcEEEEeChHHHHHhhceEE---EecCCeEEEEECCEEEEEeCCCCcccccccceEEEeCCHhH
Confidence 47999999999854445676 599999999875544555421 11 1334
Q ss_pred HhcCCcHHHHhh
Q 000266 534 SLARPYGEWLQR 545 (1760)
Q Consensus 534 a~~~py~~wl~~ 545 (1760)
+.+-+|..|+.+
T Consensus 303 ~~k~~y~hfMlk 314 (670)
T PTZ00394 303 LSKGNYPHFMLK 314 (670)
T ss_pred hhcCCCchHHHH
Confidence 455677777654
|
|
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=192.33 Aligned_cols=310 Identities=16% Similarity=0.181 Sum_probs=193.6
Q ss_pred cccccccccccCCCCCCCCCCCCcccccc------ceEecCCCcccCcHHHHHHHHHHHHHcCCceeccCCCCCccccCc
Q 000266 981 CNLRGLLKFKEADVKIPLEEVEPASEIVK------RFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEP 1054 (1760)
Q Consensus 981 ~~~r~ll~~~~~~~~i~~~eVe~~t~i~~------Pf~i~aMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGge~~e~~~~ 1054 (1760)
-|+.++| +.+....+..++|+..+.+.+ |++.++|.+.+ . ..||.|++++|++...+ ..+++|++..
T Consensus 10 ltfdDvl-l~P~~s~~~~~~vdl~t~lt~~l~l~iPIvsApMd~Vt-~----~~lA~AvA~aGGlGvI~-~~~~~e~l~~ 82 (404)
T PRK06843 10 LTFDDVS-LIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVT-E----SQMAIAIAKEGGIGIIH-KNMSIEAQRK 82 (404)
T ss_pred cCccceE-EccCCCccCHHhccccchhhhccCCCCCEecCCCCCCC-C----HHHHHHHHHCCCEEEec-CCCCHHHHHH
Confidence 3555555 444455666788888877742 99999997543 2 26999999999998887 4577776531
Q ss_pred CCCCCCchhhhheeecccC-CcCCChh------hhcCc-hhHH-------H--h--hhccCCCCCCCCCC-Cccc--h--
Q 000266 1055 LSDGSMNPKRSAIKQVASG-RFGVSSY------YLTNA-DELQ-------I--K--MAQGAKPGEGGELP-GHKV--I-- 1110 (1760)
Q Consensus 1055 ~~~g~~~~~~s~IkQvasg-rFGVt~~------~L~~a-~~iq-------I--K--iaQGAKpGeGG~Lp-g~KV--~-- 1110 (1760)
....+++..++ .+..+-+ .+..+ +.++ | + ..+..+-.. |+|. +..+ .
T Consensus 83 --------eI~~vk~~~~~~~i~~~~d~~~~~~~~~t~~~~~~~~~~~~d~~~~~~~~~a~~d~~-~~l~v~aavg~~~~ 153 (404)
T PRK06843 83 --------EIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLN-NKLRVGAAVSIDID 153 (404)
T ss_pred --------HHHHHHhhcCCCceeecccccccchhheeccccchHHHHHhhhhhhhhcchhhhhhh-cCeEEEEEEeCCHH
Confidence 11223332211 1111100 00000 0000 0 0 000011000 1111 0001 1
Q ss_pred --HHHHHHhCCCCcccccC-CCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCC
Q 000266 1111 --GDIAVTRNSTAGVGLIS-PPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHD 1187 (1760)
Q Consensus 1111 --~~IA~~R~~~pG~~lis-P~~hhDiySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~ 1187 (1760)
+.+..+. ..|+++|- ...|++ .+.+.++|.++|+.+|+.+|+++.++. ...|..+.++|||+|.+ |.+
T Consensus 154 ~~~~v~~lv--~aGvDvI~iD~a~g~---~~~~~~~v~~ik~~~p~~~vi~g~V~T---~e~a~~l~~aGaD~I~v-G~g 224 (404)
T PRK06843 154 TIERVEELV--KAHVDILVIDSAHGH---STRIIELVKKIKTKYPNLDLIAGNIVT---KEAALDLISVGADCLKV-GIG 224 (404)
T ss_pred HHHHHHHHH--hcCCCEEEEECCCCC---ChhHHHHHHHHHhhCCCCcEEEEecCC---HHHHHHHHHcCCCEEEE-CCC
Confidence 1222222 24665543 111221 245778899999999999999997654 36677899999999998 654
Q ss_pred CCC-CCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhcccccc
Q 000266 1188 GGT-GASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMR 1266 (1760)
Q Consensus 1188 GGT-Gas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r 1266 (1760)
.|+ +.++ ....+|.|.+.++.++.+.+... .+|||+||||+++.||+||++|||++|++|+++.-+
T Consensus 225 ~Gs~c~tr--~~~g~g~p~ltai~~v~~~~~~~----~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~agt------- 291 (404)
T PRK06843 225 PGSICTTR--IVAGVGVPQITAICDVYEVCKNT----NICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGT------- 291 (404)
T ss_pred CCcCCcce--eecCCCCChHHHHHHHHHHHhhc----CCeEEEeCCCCCHHHHHHHHHcCCCEEEEcceeeee-------
Confidence 443 4443 23467889999999998876543 489999999999999999999999999999986653
Q ss_pred ccccCCCCCcccccChhhHhhcC-----------------------------CC-------HHHHHHHHHHHHHHHHHHH
Q 000266 1267 KCHKNTCPVGIATQDPVLREKFA-----------------------------GE-------PEHVINFFFMLAEELREIM 1310 (1760)
Q Consensus 1267 ~ch~~~cP~giatqdp~Lr~~~~-----------------------------g~-------~e~V~n~~~~l~~ELr~~M 1310 (1760)
..||..+...+....|.|. .+ .-.|.+++..+...||..|
T Consensus 292 ----~Espg~~~~~~g~~~K~yrGmgS~~Am~~~~~~ry~~~~~~~~~~~v~eGveg~v~~~G~v~~~~~~l~gglrs~m 367 (404)
T PRK06843 292 ----KESPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGM 367 (404)
T ss_pred ----ecCCCcEEEECCEEEEEEeccchHHHHhccccccccccccccccccCCCccEEEecCCCCHHHHHHHHHHHHHHHh
Confidence 3456665544332211110 00 0128899999999999999
Q ss_pred HhcCCCChhhhcCCCceeeccc
Q 000266 1311 SQLGFRTITEMIGRSDMLEVDK 1332 (1760)
Q Consensus 1311 a~lG~~si~ELigr~dLl~~~~ 1332 (1760)
..+|.++|.||..+..+...+.
T Consensus 368 ~y~Ga~~i~el~~~a~fv~~t~ 389 (404)
T PRK06843 368 GYLGAATISDLKINSKFVKISH 389 (404)
T ss_pred hccCCCcHHHHHhcCeEEEEch
Confidence 9999999999988887776653
|
|
| >cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-16 Score=182.91 Aligned_cols=182 Identities=23% Similarity=0.265 Sum_probs=131.4
Q ss_pred CcEEEEEec--CCeE-EEEccc-chhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCcee----eecccccc
Q 000266 284 KDFYICSLS--SRTV-VYKGQL-KPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRI----LGHNGEIN 355 (1760)
Q Consensus 284 ~~~yI~SlS--~~ti-vyKG~g-~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr~----laHNGEIn 355 (1760)
+.++|+..+ ...+ +||+.+ ..++.. + . ++ .+.+++.++|+|+||+|.+..+..++|||.. ++|||+|.
T Consensus 42 DgwGia~~~~~~~~~~~~k~~~~~~~~~~-~-~-~~-~~~~~~~~~l~H~R~At~G~~~~~n~hPf~~~~~~~~HNG~i~ 117 (257)
T cd01908 42 DGWGIGWYEGKGGRPFRYRSPLPAWSDIN-L-E-SL-ARPIKSPLVLAHVRAATVGPVSLENCHPFTRGRWLFAHNGQLD 117 (257)
T ss_pred CCcEEEEecCCCCeeeeeCCCCCCcCCcc-h-H-Hh-hccccccEEEEEEecCCCCCCccccCCCcccCCEEEEeCCccC
Confidence 457888877 4555 999994 455543 2 2 23 2577899999999999999888999999964 79999999
Q ss_pred ChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCC-C----HHHHHHHcCccccccCC
Q 000266 356 TLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGR-S----LPEAVMMMIPEAWQNDK 430 (1760)
Q Consensus 356 t~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~-s----l~eAi~~~iPeaw~~~~ 430 (1760)
++...+.. +...++..+.+.||||++.+++......+. + +.+|+...+.
T Consensus 118 n~~~l~~~-------------------l~~~~~~~~~~~tDSE~~~~li~~~l~~~~~~~~~~~~~al~~~~~------- 171 (257)
T cd01908 118 GFRLLRRR-------------------LLRLLPRLPVGTTDSELAFALLLSRLLERDPLDPAELLDAILQTLR------- 171 (257)
T ss_pred CcchhhHH-------------------HHhcCccCCccCCHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-------
Confidence 87655443 333332234789999999888764433222 1 5555554431
Q ss_pred CCCHHHHHHHHHHHhccCCC--CCCcEEEecCCceEEEccCCCCCCCceEEEEe------------------CCEEEEEe
Q 000266 431 NMDPQRKALYEYFSALMEPW--DGPALISFTDGRYLGATLDRNGLRPGRFYITH------------------SGRVIMAS 490 (1760)
Q Consensus 431 ~m~~e~rafYey~s~lmepw--dGPa~iv~tdG~~igA~lDrnGLRPlr~~~t~------------------d~~~i~AS 490 (1760)
. +..| .|.+.++++||..+.|++|+. .||+ |+... ++.++|||
T Consensus 172 --------------~-l~~~~~~~~~n~~~~dg~~l~a~r~~~-~~~L-~~~~~~~~~~~~~~~~~~~~~~~~~~~vvaS 234 (257)
T cd01908 172 --------------E-LAALAPPGRLNLLLSDGEYLIATRYAS-APSL-YYLTRRAPFGCARLLFRSVTTPNDDGVVVAS 234 (257)
T ss_pred --------------H-HHHhCcCeEEEEEEECCCEEEEEEeCC-CCce-EEEeccccccccccccccccCCCCCEEEEEe
Confidence 1 1122 356788899999999999999 8999 77765 47899999
Q ss_pred ccccccCCCCcEEEccccCCCcEEEEEc
Q 000266 491 EVGVVDIPPEDVLRKGRLNPGMMLLVDF 518 (1760)
Q Consensus 491 E~galdi~~~~vv~kgrl~PGeml~vd~ 518 (1760)
|.++.+. .|+ +|+||+++.|+.
T Consensus 235 E~l~~~~----~w~--~v~~ge~~~i~~ 256 (257)
T cd01908 235 EPLTDDE----GWT--EVPPGELVVVSE 256 (257)
T ss_pred CCCCCCC----Cce--EeCCCEEEEEeC
Confidence 9998764 343 799999999975
|
YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits. |
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-16 Score=189.40 Aligned_cols=174 Identities=21% Similarity=0.274 Sum_probs=122.0
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCC-CCCCccccccccCCCHHHHHHHHHH
Q 000266 1136 SIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGG-TGASRWTGIKNAGLPWELGLAETHQ 1214 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GG-TGas~~~si~~~GlP~~~~Laev~q 1214 (1760)
+++++.++++ +. +.||+++-+. ....|..+.++|||+|.| |.++| .+.++ ....+|+|.+.++.++.+
T Consensus 175 ~~~~i~~~ik---~~--~ipVIaG~V~---t~e~A~~l~~aGAD~V~V-G~G~Gs~~~t~--~~~g~g~p~~~ai~~~~~ 243 (368)
T PRK08649 175 EPLNLKEFIY---EL--DVPVIVGGCV---TYTTALHLMRTGAAGVLV-GIGPGAACTSR--GVLGIGVPMATAIADVAA 243 (368)
T ss_pred CHHHHHHHHH---HC--CCCEEEeCCC---CHHHHHHHHHcCCCEEEE-CCCCCcCCCCc--ccCCCCcCHHHHHHHHHH
Confidence 3555544443 32 7899885433 245677888999999988 44343 23221 234678999999999876
Q ss_pred HHH----hCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcCC
Q 000266 1215 TLV----ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAG 1290 (1760)
Q Consensus 1215 ~L~----~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g 1290 (1760)
+.+ +.+.+ +||||+||||+++.|++||++|||++|++||+|+.+..|.. ..+.+|.++.++.+.+-..+
T Consensus 244 a~~~~l~~~~~~-~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~Espg------~~~~~gm~s~~~~~~eg~~~ 316 (368)
T PRK08649 244 ARRDYLDETGGR-YVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPG------RGWHWGMAAPHPSLPRGTRI 316 (368)
T ss_pred HHHHhhhhhcCC-CCeEEEeCCCCCHHHHHHHHHcCCCeecccchhcccccCCC------cccccCcccCCCcCCCceEE
Confidence 533 32322 59999999999999999999999999999999998776542 33667777666544322110
Q ss_pred ---CHHHHHHHHH----------HHHHHHHHHHHhcCCCChhhhcCCCcee
Q 000266 1291 ---EPEHVINFFF----------MLAEELREIMSQLGFRTITEMIGRSDML 1328 (1760)
Q Consensus 1291 ---~~e~V~n~~~----------~l~~ELr~~Ma~lG~~si~ELigr~dLl 1328 (1760)
-.-.|...+. ++...||..|..+|+++|.|| .+.+++
T Consensus 317 ~~~~~g~~~~~~~~~~~~~~~~~~~~g~l~~~m~~~g~~~~~~~-~~~~~~ 366 (368)
T PRK08649 317 KVGTTGSLEQILFGPSHLPDGTHNLVGALRRSMATLGYSDLKEF-QKVEVV 366 (368)
T ss_pred eCCCcCcHHHHhcCcccccchHHHHHHHHHHHHHhcCCCcHHHH-hhcCeE
Confidence 0123556655 888999999999999999998 566654
|
|
| >TIGR03442 conserved hypothetical protein TIGR03442 | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-16 Score=181.75 Aligned_cols=190 Identities=19% Similarity=0.192 Sum_probs=128.4
Q ss_pred CcEEEEEecCC---e-EEEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCC-CCCCCCCCcee----eeccccc
Q 000266 284 KDFYICSLSSR---T-VVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTF-PSWDRAQPMRI----LGHNGEI 354 (1760)
Q Consensus 284 ~~~yI~SlS~~---t-ivyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~-psw~~AQPfr~----laHNGEI 354 (1760)
+.++|+...++ . .+||..+-+..=..+ . .|. ..+++.++|+|+||+|.+. .++.|+|||.. ++|||+|
T Consensus 43 DGwGia~~~~~~~~~~~~~k~~~pa~~d~~l-~-~l~-~~~~s~~~i~HvR~AT~G~~~~~~N~hPf~~g~~~~aHNG~i 119 (251)
T TIGR03442 43 DGFGVGWYDSGKDTVPFRYRSTQPIWNDINF-A-SLA-RYVESGCVLAAVRSATVGMAIDESACAPFSDGRWLFSHNGFV 119 (251)
T ss_pred CcceEEEecCCCCCCceEEeCCCccccChhH-H-HHH-hhcccceEEEEeeeCCCCCCcchhcCCCCCcCCEEEEeCCcc
Confidence 45788888765 3 499999877542222 2 232 3478999999999999997 56799999973 6999999
Q ss_pred cChhhHH-HHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcC--CCHHHHHHHcCccccccCCC
Q 000266 355 NTLRGNV-NWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAG--RSLPEAVMMMIPEAWQNDKN 431 (1760)
Q Consensus 355 nt~~gN~-n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g--~sl~eAi~~~iPeaw~~~~~ 431 (1760)
.++...+ +.++ + +|+..+...+.+.||||.+.+++....... .++++|+..++..
T Consensus 120 ~n~~~~~r~~L~--~-------------~l~~~~~~~~~g~TDSE~i~~li~~~~~~~~~~~~~~ai~~~~~~------- 177 (251)
T TIGR03442 120 DNFRQTLYRPLR--D-------------RLPDIFYLAIEGSTDSAHLFALLLNRLLENDPRALEEALAEVLLI------- 177 (251)
T ss_pred CCchhhhhHHHH--h-------------cCChhhccCCCCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH-------
Confidence 9875321 2222 1 122222112478999998877665333221 4667776655321
Q ss_pred CCHHHHHHHHHHHhccCCCCCCcEEEecCCceEEEccCCCCCCCceEEEEeCCEEEEEeccccccCCCCcEEEccccCCC
Q 000266 432 MDPQRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPG 511 (1760)
Q Consensus 432 m~~e~rafYey~s~lmepwdGPa~iv~tdG~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~galdi~~~~vv~kgrl~PG 511 (1760)
.... ..++ ...+.++++||..+.|+||++ || |+++.++.+++|||. + ..+..|+ +|+||
T Consensus 178 -------l~~~---~~~~-~~~~n~~~sdg~~l~a~R~~~---~L-~~~~~~~~~vvASEp--l--~~~~~W~--~v~pg 236 (251)
T TIGR03442 178 -------LFSA---AAAP-RVRLNLLLTDGSRLVATRWAD---TL-YWLKDPEGVIVASEP--Y--DDDPGWQ--DVPDR 236 (251)
T ss_pred -------HHHH---hhCc-ccceEEEEEcCCEEEEEEeCC---eE-EEEEcCCEEEEEeCC--c--CCCCCce--EeCCC
Confidence 0111 1111 233789999999999999998 99 788877899999998 3 3333664 89999
Q ss_pred cEEEEEcC
Q 000266 512 MMLLVDFE 519 (1760)
Q Consensus 512 eml~vd~~ 519 (1760)
|||+|+.+
T Consensus 237 e~v~i~~~ 244 (251)
T TIGR03442 237 HLLSVSED 244 (251)
T ss_pred eEEEEECC
Confidence 99999764
|
Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein). |
| >COG2218 FwdC Formylmethanofuran dehydrogenase subunit C [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.2e-17 Score=178.96 Aligned_cols=151 Identities=29% Similarity=0.387 Sum_probs=125.3
Q ss_pred EEEecccccCcchhhhhhHHHH-----HhhccCCCCCccEEEEEecCccchhhhcCCCCcEEEEEecCCchhh-------
Q 000266 1395 YIETPVCNVNRAVGTMLSHEVT-----KRYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVG------- 1462 (1760)
Q Consensus 1395 ~~~~~i~n~dR~vG~~Ls~~i~-----~~~g~~gl~~~~i~i~~~G~aGq~~Gaf~~~G~~i~v~G~A~DyvG------- 1462 (1760)
.++.++.++.|+-..|-+|+|. -.|=..+|..++|.| +|+|-..+|.-| +|.+|++.|||.||||
T Consensus 68 ~i~gD~~~~k~iG~~M~aGeI~V~GdVg~~~G~~MkgGkI~V--~G~a~sw~G~Em-~gge~~i~gna~dyVg~~YRge~ 144 (264)
T COG2218 68 SIDGDVSRVKRIGERMSAGEIIVEGDVGMHVGAGMKGGKIVV--NGNADSWAGIEM-KGGEIKIFGNAGDYVGCAYRGEW 144 (264)
T ss_pred EEcCchhhhccccccccccEEEEeccccceeeeeeeccEEEE--eCCCCCccccee-eCCeEEEeechHHhccceeeccc
Confidence 4444555555543333334431 122234677888666 699999899777 7889999999999999
Q ss_pred cCCCCceEEEeCCCCCCCCCCccccchhhhhccCcccEEEEecccccccccccCCcEEEEcC-CCccccccccCcEEEEe
Q 000266 1463 KGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCVRNSGARAVVEG-VGDHGCEYMTGGTVVVL 1541 (1760)
Q Consensus 1463 kgmsGG~IvV~g~~~~~~~~~~~~i~Gn~~~yGatgG~i~v~G~aGeR~gvr~sG~~iVV~G-~Gd~~~eyMtgG~ivVl 1541 (1760)
+||+||+|+|+|| +||..+-.|++|+|+|.||||..+|++|+||+|+|+| ++++.|--|.+|+|||.
T Consensus 145 rgm~Gg~Iiv~Gn------------a~~~iG~~M~~G~I~V~GdaG~~~Gi~~nGGtIII~Gd~~~~~G~eM~~G~IvV~ 212 (264)
T COG2218 145 RGMSGGKIIVEGN------------AGNSIGELMRGGEIIVKGDAGKFTGIHMNGGTIIIEGDAGDFVGGEMKGGTIVVD 212 (264)
T ss_pred ccCcCCEEEEecC------------cccchhhhccCcEEEEecccccceeeEecCCEEEEECCcCccccceeeCcEEEEc
Confidence 7899999999999 7888899999999999999999999999999999999 69999999999999999
Q ss_pred CCCCCcccCCCcceEEEEE
Q 000266 1542 GKTGRNFAAGMSGGIAYVL 1560 (1760)
Q Consensus 1542 G~~G~~~gagM~gG~iyv~ 1560 (1760)
|+++..+++-=..|+++-+
T Consensus 213 G~~~~~Lp~fk~~g~~~~~ 231 (264)
T COG2218 213 GKAGEFLPGFKREGVEEAR 231 (264)
T ss_pred cCHHHhCccceeeeeEecc
Confidence 9999999998889988854
|
|
| >PF13522 GATase_6: Glutamine amidotransferase domain | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.2e-16 Score=161.92 Aligned_cols=116 Identities=26% Similarity=0.324 Sum_probs=88.9
Q ss_pred CccccEEEEeecccCCCCCCCCCCCCc--e----eeeccccccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCC
Q 000266 319 RFTSYMALIHSRFSTNTFPSWDRAQPM--R----ILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDV 392 (1760)
Q Consensus 319 ~~~s~~ai~H~RySTNT~psw~~AQPf--r----~laHNGEInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~ 392 (1760)
.+.+.++|+|+||+|++.+.+.++||| . +++|||+|.|+...++.+.. .+ .-+.
T Consensus 9 ~~~~~~~lgH~R~AT~G~~~~~~~hPf~~~~g~~~~~HNG~i~n~~~L~~~l~~-------------------~g-~~~~ 68 (133)
T PF13522_consen 9 WLDGEAALGHTRYATVGSPTEENNHPFSNRDGRIALAHNGNIDNYKELREELGE-------------------KG-HPFE 68 (133)
T ss_pred hcCCCEEEEEeecCCCCCCCCcCCCCCcCCCCCEEEEECCeecCHHHHHHHHHH-------------------CC-Cccc
Confidence 456889999999999999988888999 3 27999999998877665432 11 2247
Q ss_pred CCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHHHHHHHHHHHhccCCCCCCcEEEec---CCceEEEccC
Q 000266 393 SSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFT---DGRYLGATLD 469 (1760)
Q Consensus 393 ~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e~rafYey~s~lmepwdGPa~iv~t---dG~~igA~lD 469 (1760)
+.||||+|.+++ .+.| .+++. .++|.+++++. .++++. ++|
T Consensus 69 ~~tDSEii~~li---~~~g---~~~l~-----------------------------~l~G~~a~~~~~~~~~~l~~-~rd 112 (133)
T PF13522_consen 69 SDTDSEIIAALI---HRWG---EEALE-----------------------------RLDGAFAFAVYDKTPNKLFL-ARD 112 (133)
T ss_pred CCCHHHHHHHHH---HHHH---HHHHH-----------------------------HhcCceEEEEEEcCCCEEEE-EEc
Confidence 899999998876 2333 34433 35998766653 355555 599
Q ss_pred CCCCCCceEEEEeCCEEEEEec
Q 000266 470 RNGLRPGRFYITHSGRVIMASE 491 (1760)
Q Consensus 470 rnGLRPlr~~~t~d~~~i~ASE 491 (1760)
|.|.||| |++..++.+++|||
T Consensus 113 ~~g~~PL-~~~~~~~~~~~ASE 133 (133)
T PF13522_consen 113 PLGIRPL-YYGRDGDGYVFASE 133 (133)
T ss_pred CCCCCCE-EEEEcCCEEEEEeC
Confidence 9999999 88888999999999
|
|
| >cd00504 GXGXG GXGXG domain | Back alignment and domain information |
|---|
Probab=99.64 E-value=3e-16 Score=166.62 Aligned_cols=108 Identities=25% Similarity=0.347 Sum_probs=101.4
Q ss_pred CCcEEEEEecCCchhhcCCCCceEEEeCCCCCCCCCCccccchhhhhccCcccEEEEe-------cccccccccccCCcE
Q 000266 1447 PGILLELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATSGEAYFN-------GMAAERFCVRNSGAR 1519 (1760)
Q Consensus 1447 ~G~~i~v~G~A~DyvGkgmsGG~IvV~g~~~~~~~~~~~~i~Gn~~~yGatgG~i~v~-------G~aGeR~gvr~sG~~ 1519 (1760)
...+|+++|++.+++|..|+||+|+|+|+ +|+.++-+|+||+|+|. |+||..++.-|+||+
T Consensus 20 ~~~~i~i~G~~g~~~G~~m~gg~I~v~G~------------agd~~G~~m~GG~I~V~g~~~~~~G~ag~~~~~gm~gG~ 87 (149)
T cd00504 20 DTVEIIINGSAGQSFGAFMAGGTITVEGN------------ANDYVGKGMSGGEIVIHPPAGDENGIAGNVALYGATGGK 87 (149)
T ss_pred CcEEEEEEccCchHhhhhcCCCEEEEEEc------------CchhhhccccCCEEEEecCCcccceeehHhhhhhccCCE
Confidence 35799999999999999999999999999 79999999999999999 777888888899999
Q ss_pred EEEcC-CCccccccccCcEEEEeCCCCCcccCCCcceEEEEEcCCchh
Q 000266 1520 AVVEG-VGDHGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYVLDVDGKF 1566 (1760)
Q Consensus 1520 iVV~G-~Gd~~~eyMtgG~ivVlG~~G~~~gagM~gG~iyv~~~~~~~ 1566 (1760)
++|+| +|+++|++|.||+|+|.|++|.++|..|.+|+|+|.+..+.+
T Consensus 88 i~V~G~AG~~~G~~m~GG~ivV~G~~g~~~g~~M~gG~ivV~G~~g~~ 135 (149)
T cd00504 88 IFVRGNAGERFGVRMSGGTIVVEGVGDDFGGEYMTGGTIVVLGDAGRN 135 (149)
T ss_pred EEEEecchhhhhhhccCcEEEEEeecCccccccccCCEEEEeCCCCcC
Confidence 99999 599999999999999999999999999999999999987754
|
This domain of unknown function is found at the C-terminus of the large subunit (gltB) of glutamate synthase (GltS), in subunit C of tungsten formylmethanofuran dehydrogenase (FwdC) and in subunit C of molybdenum formylmethanofuran dehydrogenase (FmdC). It is also found in a primarily archeal group of proteins predicted to encode part of the large subunit of GltS. It is characterized by a repeated GXXGXXXG motif. GltS is a complex iron-sulfur flavoprotein that catalyzes the synthesis of L-glutamate from L-glutamine and 2-oxoglutarate. It requires the transfer of ammonia and electrons among three distinct active centers that carry out L-Gln hydrolysis, conversion of 2-oxoglutarate into L-Glu, and electron uptake from a donor. These catalytic sites occur in other domains within the protein or or encoded by separate genes, and are not present in the domain in this CD. FwdC and FmdC are reversible ion pumps that catalyze the formylation and deformylation of met |
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.5e-15 Score=176.34 Aligned_cols=168 Identities=20% Similarity=0.254 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHH-
Q 000266 1137 IEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQT- 1215 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~- 1215 (1760)
++++.++++.+ +.||+++.+ .....|..+.++|||+|.+ |+ ||++.++ ....+++|+..+++++..+
T Consensus 177 p~~l~~~i~~~-----~IPVI~G~V---~t~e~A~~~~~aGaDgV~~-G~-gg~~~~~--~~lg~~~p~~~ai~d~~~a~ 244 (369)
T TIGR01304 177 PLNLKEFIGEL-----DVPVIAGGV---NDYTTALHLMRTGAAGVIV-GP-GGANTTR--LVLGIEVPMATAIADVAAAR 244 (369)
T ss_pred HHHHHHHHHHC-----CCCEEEeCC---CCHHHHHHHHHcCCCEEEE-CC-CCCcccc--cccCCCCCHHHHHHHHHHHH
Confidence 56666655443 789988543 2346678888999999983 33 4444432 2345789998898888754
Q ss_pred ---HHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhh--------
Q 000266 1216 ---LVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVL-------- 1284 (1760)
Q Consensus 1216 ---L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~L-------- 1284 (1760)
+.+.+.| .|+||+||||+|+.||+||++||||+|++||+|+.+..|.. ..|++|.++.+|.|
T Consensus 245 ~~~~~e~g~r-~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~Eapg------~~~~w~~~~~~~~~~~~~~~~~ 317 (369)
T TIGR01304 245 RDYLDETGGR-YVHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAEAPG------RGYFWPAAAAHPRLPRGVVTES 317 (369)
T ss_pred HHHHHhcCCC-CceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhcCCC------CCCccchhhcCccCCccccccc
Confidence 3343333 59999999999999999999999999999999999887642 34555555555444
Q ss_pred ---------HhhcCC---CHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCcee
Q 000266 1285 ---------REKFAG---EPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDML 1328 (1760)
Q Consensus 1285 ---------r~~~~g---~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~dLl 1328 (1760)
.+-+.| .+++..| +...||..|+.+|+++++|+ .|.++.
T Consensus 318 ~~~~~~~~~~~~~~gp~~~~~~~~n----~~g~~~~~~~~~g~~~~~~~-~~~~~~ 368 (369)
T TIGR01304 318 GTVGEAPTLEEILHGPSTLPDGVEN----FEGGLKRAMAKCGYTDLKEF-QKVSLT 368 (369)
T ss_pred cccCCCCcHHHHeeCCCCCCcchhh----hHHHHHHHHHHcCchhhhhh-hhccee
Confidence 333322 1344444 55688999999999999998 777654
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-14 Score=179.69 Aligned_cols=182 Identities=16% Similarity=0.110 Sum_probs=135.1
Q ss_pred HHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCC
Q 000266 1141 AQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVAND 1220 (1760)
Q Consensus 1141 aqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~g 1220 (1760)
.+.|.+||+.+|+++|+++-+.+ ...|..+.++|||+|.|..+.|+++.++. ..++|.|.+.++.++.+.+.+.
T Consensus 270 ~~~i~~ik~~~~~~~v~aG~V~t---~~~a~~~~~aGad~I~vg~g~Gs~~~t~~--~~~~g~p~~~ai~~~~~~~~~~- 343 (495)
T PTZ00314 270 IDMIKKLKSNYPHVDIIAGNVVT---ADQAKNLIDAGADGLRIGMGSGSICITQE--VCAVGRPQASAVYHVARYARER- 343 (495)
T ss_pred HHHHHHHHhhCCCceEEECCcCC---HHHHHHHHHcCCCEEEECCcCCcccccch--hccCCCChHHHHHHHHHHHhhc-
Confidence 56799999998999998875432 35677899999999999766677766553 4589999999999999987654
Q ss_pred CCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhcccc--------ccccccCCCCCcccccChhhHhhcC---
Q 000266 1221 LRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIM--------MRKCHKNTCPVGIATQDPVLREKFA--- 1289 (1760)
Q Consensus 1221 lr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~--------~r~ch~~~cP~giatqdp~Lr~~~~--- 1289 (1760)
.++||+||||+|+.||+||+++||++|++|++|.-+..|.. .-|+..+-++.+..++.....+.|.
T Consensus 344 ---~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~~~e~~~~~~~~~g~~~k~yrGm~s~~a~~~~~~~~~y~~~~~ 420 (495)
T PTZ00314 344 ---GVPCIADGGIKNSGDICKALALGADCVMLGSLLAGTEEAPGEYFFKDGVRLKVYRGMGSLEAMLSKESGERYLDENE 420 (495)
T ss_pred ---CCeEEecCCCCCHHHHHHHHHcCCCEEEECchhccccccCCceeeeCCeEEEEEeccchHHHhhccccccccccccc
Confidence 48999999999999999999999999999998765443321 1233344444443332211111111
Q ss_pred -----CC-------HHHHHHHHHHHHHHHHHHHHhcCCCChhhhcC-----CCceeecc
Q 000266 1290 -----GE-------PEHVINFFFMLAEELREIMSQLGFRTITEMIG-----RSDMLEVD 1331 (1760)
Q Consensus 1290 -----g~-------~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELig-----r~dLl~~~ 1331 (1760)
.+ ...|.+++..+..+||..|..+|.+||.||.. +..+...+
T Consensus 421 ~~~~~egv~~~v~~~g~~~~~~~~~~~gl~~~~~y~g~~~i~~~~~~~~~~~~~f~~~t 479 (495)
T PTZ00314 421 TIKVAQGVSGSVVDKGSVAKLIPYLVKGVKHGMQYIGAHSIPELHEKLYSGQVRFERRS 479 (495)
T ss_pred ccccCCceEEeeecCCcHHHHHHHHHHHHHHHHHhhCCCcHHHHHhhcccCceEEEEEC
Confidence 11 13489999999999999999999999999966 66666554
|
|
| >PF01493 GXGXG: GXGXG motif; InterPro: IPR002489 Glutamate synthase (GltS) is a complex iron-sulphur flavoprotein that catalyses the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the bacterial, yeast and plant pathways for ammonia assimilation [] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-15 Score=167.66 Aligned_cols=109 Identities=29% Similarity=0.447 Sum_probs=84.4
Q ss_pred ccEEEEEecCccchhhhcCCCCcEEEEEecCCc--------------hhhcCCCCceEEEeCCCCCCCCCCccccchhhh
Q 000266 1427 DTIHIKLTGSAGQSVGAFLCPGILLELEGDSND--------------YVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVA 1492 (1760)
Q Consensus 1427 ~~i~i~~~G~aGq~~Gaf~~~G~~i~v~G~A~D--------------yvGkgmsGG~IvV~g~~~~~~~~~~~~i~Gn~~ 1492 (1760)
..++|.|+|++|+++|..| .|++|+|+|+++| +++.||+||+|+|+|+ +|+.+
T Consensus 52 ~g~~I~V~G~ag~~~G~~m-~GG~I~V~Gn~~~~~~~~~~~~~~~G~~~~~Gm~gG~i~V~G~------------aG~r~ 118 (202)
T PF01493_consen 52 GGLKIVVEGDAGDYVGKGM-SGGTIIVKGNAGDDDGGGIVVSGSAGDYLGYGMRGGTIFVQGN------------AGSRA 118 (202)
T ss_dssp TTEEEEEEEEE-STTTTT--ECCEEEEE--TT---SS-GGGSEEC-SSTTTT--CEEEEESSE------------E-TTT
T ss_pred CCeEEEEEecccchhHhhC-CCCEEEEECCcccccccceEeeeeeeccccccccceEEEEEec------------cccce
Confidence 4567888999999999999 8899999999998 4679999999999999 78888
Q ss_pred hccCcccEEEEecccccccccccCCcEEEEcC-CCccccccccCcEEEEeCCCCCcc
Q 000266 1493 LYGATSGEAYFNGMAAERFCVRNSGARAVVEG-VGDHGCEYMTGGTVVVLGKTGRNF 1548 (1760)
Q Consensus 1493 ~yGatgG~i~v~G~aGeR~gvr~sG~~iVV~G-~Gd~~~eyMtgG~ivVlG~~G~~~ 1548 (1760)
+..|++|+|.|.|+||+.+|..|.||+|||.| +|+++|..|+||+|+|.|++...+
T Consensus 119 g~~m~gg~iiV~G~~g~~~g~~M~gG~ivV~G~~G~~~g~~m~gG~I~v~g~~~~~l 175 (202)
T PF01493_consen 119 GIRMSGGTIIVEGNAGDFAGEYMTGGTIVVLGDAGDNAGAGMKGGTIYVRGPVEDSL 175 (202)
T ss_dssp TTT-CCEEEEESEB--SSTTTT-EEEEEEESS-B-SSBTTT--CCEEEEE-TTS-TH
T ss_pred eeecceeEEEEeccccCCeeecccCCEEEEecCCCcccCCCCCCeEEEEcCCCcccc
Confidence 88999999999999999999999999999999 599999999999999999998433
|
GltS is a multifunctional enzyme that functions through three distinct active centres carrying out multiple reaction steps: L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. The active centres are synchronised to avoid the wasteful consumption of L-glutamine []. There are three classes of GltS, which share many functional properties: bacterial NADPH-dependent GltS, ferredoxin-dependent GltS from photosynthetic cells, and NAD(P)H-dependent GltS from yeast, fungi and lower animals. The dimeric alpha subunits each consist of four domains: N-terminal amidotransferase domain, the central domain, the FMN binding domain and the C-terminal domain. The C-terminal domain forms a right-handed beta-helix that comprises seven helical turns []. Each helical turn has a sharp bend that is associated with a repeated sequence motif consisting of G-XX-G-XXX-G. This domain does not contain any residues directly involved in catalysis, but has a crucial structural role. This domain is also found in proteins such as subunit C of formylmethanofuran dehydrogenase, which catalyses the first step in methane formation from carbon dioxide in methanogenic archaea. There are two isoenzymes of formylmethanofuran dehydrogenase: a tungsten-containing isoenzyme (FwdC) and a molybdenum-containing isoenzyme (FmdC). The tungsten isoenzyme is constitutively transcribed, whereas transcription of the molybdenum operon is induced by molybdate [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A. |
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-14 Score=167.63 Aligned_cols=280 Identities=15% Similarity=0.144 Sum_probs=181.1
Q ss_pred cccccccccccCCCCCCC-CCCCCccccc---------c-ceEecCCCcccCcHHHHHHHHHHHHHcCCceeccCCCCCc
Q 000266 981 CNLRGLLKFKEADVKIPL-EEVEPASEIV---------K-RFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQP 1049 (1760)
Q Consensus 981 ~~~r~ll~~~~~~~~i~~-~eVe~~t~i~---------~-Pf~i~aMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGge~~ 1049 (1760)
.++.++| +++.+..+.- +|||+.+++. + |++-+.|-. -....+|+++++.|.+...--- .++
T Consensus 8 l~f~DVl-l~P~~s~v~sR~evdl~~~~~~~~~~~~~~~iPii~AnMdt-----v~~~~mA~~la~~g~~~~iHk~-~~~ 80 (343)
T TIGR01305 8 LDFKDVL-LRPKRSTLKSRADVELERTFTFRNSKQTYSGVPIIAANMDT-----VGTFEMAAALSQHSIFTAIHKH-YSV 80 (343)
T ss_pred CCccceE-EecCcCccCcHHHceeeEEEccccCCceeeCCceEecCCCc-----ccCHHHHHHHHHCCCeEEEeeC-CCH
Confidence 3555666 5544444444 7888887765 2 999999962 2334699999999998665321 233
Q ss_pred cccCcCCCCCCchhhhheeecccC-------CcCCChhhhcCchhHHHhhhccCCCCCCCCCCCccchHHHHHHhCCCCc
Q 000266 1050 SRMEPLSDGSMNPKRSAIKQVASG-------RFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAG 1122 (1760)
Q Consensus 1050 e~~~~~~~g~~~~~~s~IkQvasg-------rFGVt~~~L~~a~~iqIKiaQGAKpGeGG~Lpg~KV~~~IA~~R~~~pG 1122 (1760)
|+.. ..++.+.+. --|++++++..+ ..+....++
T Consensus 81 e~~~-----------~~v~~~~~~~~~~~~vsvG~~~~d~er~----------------------------~~L~~a~~~ 121 (343)
T TIGR01305 81 DEWK-----------AFATNSSPDCLQNVAVSSGSSDNDLEKM----------------------------TSILEAVPQ 121 (343)
T ss_pred HHHH-----------HHHHhhcccccceEEEEeccCHHHHHHH----------------------------HHHHhcCCC
Confidence 3221 112221111 113333333222 222222334
Q ss_pred cccc---CCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEE-ccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccc
Q 000266 1123 VGLI---SPPPHHDIYSIEDLAQLIYDLKNANPGARISVKL-VSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGI 1198 (1760)
Q Consensus 1123 ~~li---sP~~hhDiySiedLaqlI~~Lk~~~p~~pV~VKl-v~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si 1198 (1760)
.+.| +..+|. +-..+.|.++|+.+|+.+ ++|. + .....|..+.++|||+|.|+=..|..+.++. .
T Consensus 122 ~d~iviD~AhGhs-----~~~i~~ik~ir~~~p~~~-viaGNV---~T~e~a~~Li~aGAD~ikVgiGpGSicttR~--~ 190 (343)
T TIGR01305 122 LKFICLDVANGYS-----EHFVEFVKLVREAFPEHT-IMAGNV---VTGEMVEELILSGADIVKVGIGPGSVCTTRT--K 190 (343)
T ss_pred CCEEEEECCCCcH-----HHHHHHHHHHHhhCCCCe-EEEecc---cCHHHHHHHHHcCCCEEEEcccCCCcccCce--e
Confidence 4333 222322 345677999999998754 4554 3 3346778899999999999744454455442 4
Q ss_pred cccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCccc
Q 000266 1199 KNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIA 1278 (1760)
Q Consensus 1199 ~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~gia 1278 (1760)
..+|.|.+.+|+++.++.... +++||+||||+++.||+||+++||++|++|.. .| |+ ..+|-.+.
T Consensus 191 ~Gvg~pqltAv~~~a~aa~~~----~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~l--lA-G~--------~Espg~~i 255 (343)
T TIGR01305 191 TGVGYPQLSAVIECADAAHGL----KGHIISDGGCTCPGDVAKAFGAGADFVMLGGM--FA-GH--------TESGGEVI 255 (343)
T ss_pred CCCCcCHHHHHHHHHHHhccC----CCeEEEcCCcCchhHHHHHHHcCCCEEEECHh--hh-Cc--------CcCcceeE
Confidence 677889999999999986432 58999999999999999999999999999953 22 22 23454544
Q ss_pred ccChhhHhhcCC---------------------C-------HHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCceeec
Q 000266 1279 TQDPVLREKFAG---------------------E-------PEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEV 1330 (1760)
Q Consensus 1279 tqdp~Lr~~~~g---------------------~-------~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~dLl~~ 1330 (1760)
..+....|.|-| + .-.|.+++..+...||..|..+|.++|.||..++.+++.
T Consensus 256 ~~~G~~~K~yrGMgS~~Am~~~~g~~~ry~~~EG~e~~vp~kG~v~~~l~~l~gGlrs~m~Y~Ga~~i~el~~~a~fv~v 335 (343)
T TIGR01305 256 ERNGRKFKLFYGMSSDTAMKKHAGGVAEYRASEGKTVEVPYRGDVENTILDILGGLRSACTYVGAAKLKELSKRATFIRV 335 (343)
T ss_pred eECCEEEEEEeccchHHHHhhccCcccccccccCceEEeccCCcHHHHHHHHHHHHHHHhhccCcCcHHHHHhCCEEEEE
Confidence 444332222211 0 113888999999999999999999999999888998877
Q ss_pred cc
Q 000266 1331 DK 1332 (1760)
Q Consensus 1331 ~~ 1332 (1760)
+.
T Consensus 336 t~ 337 (343)
T TIGR01305 336 TQ 337 (343)
T ss_pred Cc
Confidence 53
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-13 Score=161.86 Aligned_cols=280 Identities=16% Similarity=0.129 Sum_probs=186.2
Q ss_pred ccccccccccCCCCCCC-CCCCCccccc----------cceEecCCCcccCcHHHHHHHHHHHHHcCCceeccCCCCCcc
Q 000266 982 NLRGLLKFKEADVKIPL-EEVEPASEIV----------KRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPS 1050 (1760)
Q Consensus 982 ~~r~ll~~~~~~~~i~~-~eVe~~t~i~----------~Pf~i~aMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGge~~e 1050 (1760)
++.++| +++.+..+.- +|||...++. -|++.+.|-- -....+|+++++.|.+...-- -.++|
T Consensus 10 ~f~DVl-l~P~~s~v~sRsevdl~~~~~~~~~~~~~~giPii~AnMdT-----V~~~~mA~~la~~g~~~~iHk-~~~~e 82 (346)
T PRK05096 10 GFKDVL-IRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMDT-----VGTFEMAKALASFDILTAVHK-HYSVE 82 (346)
T ss_pred CceeEE-EecCcCccccHHHceecceeeeecccccccCCceEecCCCc-----cccHHHHHHHHHCCCeEEEec-CCCHH
Confidence 455555 4544444443 5777766664 3999999963 223469999999999866532 12333
Q ss_pred ccCcCCCCCCchhhhheeecccCC-------cCCChhhhcCchhHHHhhhccCCCCCCCCCCCccchHHHHHHhCCCCcc
Q 000266 1051 RMEPLSDGSMNPKRSAIKQVASGR-------FGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGV 1123 (1760)
Q Consensus 1051 ~~~~~~~g~~~~~~s~IkQvasgr-------FGVt~~~L~~a~~iqIKiaQGAKpGeGG~Lpg~KV~~~IA~~R~~~pG~ 1123 (1760)
+.. ..++.+.+.. -|++++++... ..+....+|.
T Consensus 83 ~~~-----------~fv~~~~~~~~~~~~vavG~~~~d~er~----------------------------~~L~~~~~g~ 123 (346)
T PRK05096 83 EWA-----------AFVNNSSADVLKHVMVSTGTSDADFEKT----------------------------KQILALSPAL 123 (346)
T ss_pred HHH-----------HHHHhccccccceEEEEecCCHHHHHHH----------------------------HHHHhcCCCC
Confidence 221 1122221111 13333333222 2222223444
Q ss_pred ccc---CCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccc
Q 000266 1124 GLI---SPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKN 1200 (1760)
Q Consensus 1124 ~li---sP~~hhDiySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~ 1200 (1760)
+.| +..+| | +...+.|.++|+.+|+.+|+.--| .....|..+.++|||+|.|-=..|.-+.++. ...
T Consensus 124 D~iviD~AhGh----s-~~~i~~ik~ik~~~P~~~vIaGNV---~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~--vtG 193 (346)
T PRK05096 124 NFICIDVANGY----S-EHFVQFVAKAREAWPDKTICAGNV---VTGEMVEELILSGADIVKVGIGPGSVCTTRV--KTG 193 (346)
T ss_pred CEEEEECCCCc----H-HHHHHHHHHHHHhCCCCcEEEecc---cCHHHHHHHHHcCCCEEEEcccCCccccCcc--ccc
Confidence 433 22222 2 346778999999999999988765 3456778899999999998444444454442 357
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCccccc
Q 000266 1201 AGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQ 1280 (1760)
Q Consensus 1201 ~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatq 1280 (1760)
+|.|...++.++.++.... .+|||+||||++..||+||+++|||+|++|+.|-- ...+|-.+...
T Consensus 194 vG~PQltAV~~~a~~a~~~----gvpiIADGGi~~sGDI~KAlaaGAd~VMlGsllAG-----------t~EsPGe~~~~ 258 (346)
T PRK05096 194 VGYPQLSAVIECADAAHGL----GGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAG-----------HEESGGEIVEE 258 (346)
T ss_pred cChhHHHHHHHHHHHHHHc----CCCEEecCCcccccHHHHHHHcCCCEEEeChhhcC-----------cccCCCcEEEE
Confidence 7999999999999988765 47999999999999999999999999999996432 23566666555
Q ss_pred ChhhHhhcCC------------C------H----------HHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCceeeccc
Q 000266 1281 DPVLREKFAG------------E------P----------EHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVDK 1332 (1760)
Q Consensus 1281 dp~Lr~~~~g------------~------~----------e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~dLl~~~~ 1332 (1760)
+....|.|-| . + -.|.+++..+...||..|..+|.++|.||..++++++.+.
T Consensus 259 ~G~~~K~yrGMgS~~Am~~~~g~~~ry~~~EG~~~~Vp~kG~v~~~i~~l~gGlrs~m~Y~Ga~~i~el~~~a~fv~vt~ 338 (346)
T PRK05096 259 NGEKFMLFYGMSSESAMKRHVGGVAEYRAAEGKTVKLPLRGPVENTARDILGGLRSACTYVGASRLKELTKRTTFIRVQE 338 (346)
T ss_pred CCEEEEEEeccccHHHHhhccCcccccccccCceEEeccCCcHHHHHHHHHHHHHHHHcccCcCcHHHHHhCCeEEEECh
Confidence 5433322211 0 1 1388899999999999999999999999988899887753
|
|
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.7e-14 Score=169.36 Aligned_cols=184 Identities=18% Similarity=0.196 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCC-CCCCccccccccCCCHHHHHHHHHHHH
Q 000266 1138 EDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGG-TGASRWTGIKNAGLPWELGLAETHQTL 1216 (1760)
Q Consensus 1138 edLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GG-TGas~~~si~~~GlP~~~~Laev~q~L 1216 (1760)
+.+.+.|++||+.+|+.||++--|. ....|..+.++|||+|.| |-+.| .+.++ ....+|.|...++.++.++.
T Consensus 134 ~~~~~~ik~ik~~~~~~~viaGNV~---T~e~a~~L~~aGad~vkV-GiGpGsiCtTr--~v~GvG~PQ~tAv~~~a~~a 207 (352)
T PF00478_consen 134 EHVIDMIKKIKKKFPDVPVIAGNVV---TYEGAKDLIDAGADAVKV-GIGPGSICTTR--EVTGVGVPQLTAVYECAEAA 207 (352)
T ss_dssp HHHHHHHHHHHHHSTTSEEEEEEE----SHHHHHHHHHTT-SEEEE-SSSSSTTBHHH--HHHSBSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCceEEecccC---CHHHHHHHHHcCCCEEEE-eccCCcccccc--cccccCCcHHHHHHHHHHHh
Confidence 4466789999999999999988753 457788899999999999 44222 22222 24578999999999999998
Q ss_pred HhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccc---cCCCCCcccccCh-----hhHhhc
Q 000266 1217 VANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCH---KNTCPVGIATQDP-----VLREKF 1288 (1760)
Q Consensus 1217 ~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch---~~~cP~giatqdp-----~Lr~~~ 1288 (1760)
... .||||+||||+++.||+|||++|||+|++|+.|--+-.+-+--.-. .-.+..|-++..- ....+|
T Consensus 208 ~~~----~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt~EsPG~~~~~~g~~~K~yrGMgS~~A~~~~~~~~~ry 283 (352)
T PF00478_consen 208 RDY----GVPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEVIYIDGKRYKKYRGMGSLGAMKKRRGSGDRY 283 (352)
T ss_dssp HCT----TSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTBTTSSSEEEEETTEEEEEEEETTSHHHHHHHSTTGCTC
T ss_pred hhc----cCceeecCCcCcccceeeeeeecccceeechhhccCcCCCCceEEECCeEEEEecccccHHHHhhccccchhc
Confidence 764 5999999999999999999999999999999755433221100000 0001112222110 001122
Q ss_pred ---------CCC-------HHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCceeecc
Q 000266 1289 ---------AGE-------PEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVD 1331 (1760)
Q Consensus 1289 ---------~g~-------~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~dLl~~~ 1331 (1760)
..+ .-.|.+++..|...||..|..+|.++|.||..+..+++.+
T Consensus 284 ~~~~~~~~v~eGve~~vp~~G~v~~~l~~l~gglrs~m~y~Ga~~i~el~~~~~fvrvs 342 (352)
T PF00478_consen 284 FQAEDKKFVPEGVEGLVPYKGSVSDILPQLVGGLRSGMGYVGARSIKELRKKARFVRVS 342 (352)
T ss_dssp TSSTSSTSSSSBEEEEEE-BB-HHHHHHHHHHHHHHHHHHTTSSBHHHHHHHHEEEEES
T ss_pred cccccccccccceeecCCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHHhCCeEEEEC
Confidence 111 2348899999999999999999999999997777666665
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-13 Score=163.71 Aligned_cols=203 Identities=21% Similarity=0.249 Sum_probs=124.1
Q ss_pred cceEecCCCcccCcHHHHHHHHHHHHHcCCceeccCCCCCccccCcCCCCCCchhhhheeecccCCcCCChhhhcCch--
Q 000266 1009 KRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRSAIKQVASGRFGVSSYYLTNAD-- 1086 (1760)
Q Consensus 1009 ~Pf~i~aMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGge~~e~~~~~~~g~~~~~~s~IkQvasgrFGVt~~~L~~a~-- 1086 (1760)
.|++.++|++ .-++ .||.|++++|++...|.++.+++++. .....+++..+.+|||+........
T Consensus 12 ~PIiqapM~~-is~~----~LaaAVs~aGglG~l~~~~~~~~~l~--------~~i~~~~~~t~~pfgvnl~~~~~~~~~ 78 (330)
T PF03060_consen 12 YPIIQAPMGG-ISTP----ELAAAVSNAGGLGFLGAGGLTPEQLR--------EEIRKIRALTDKPFGVNLFLPPPDPAD 78 (330)
T ss_dssp SSEEE---TT-TSSH----HHHHHHHHTTSBEEEECTTSSHHHHH--------HHHHHHHHH-SS-EEEEEETTSTTHHH
T ss_pred cCEEcCCCCC-CChH----HHHHHHHhCCCEeeccccccChHHHH--------HHHHHHHhhccccccccccccCcccch
Confidence 4999999986 3345 59999999999999998888888763 2345677888889998865432211
Q ss_pred h------------HHHhhhccCCCCCCCCCCCccchHHHHHHhCCCCcccccCC-CCCCCCCCHHHHHHHHHHHHHhCCC
Q 000266 1087 E------------LQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISP-PPHHDIYSIEDLAQLIYDLKNANPG 1153 (1760)
Q Consensus 1087 ~------------iqIKiaQGAKpGeGG~Lpg~KV~~~IA~~R~~~pG~~lisP-~~hhDiySiedLaqlI~~Lk~~~p~ 1153 (1760)
. +++.+..+.. ..+.+...-.. +..+++- .+.+ ..+.|..++.. +
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~--~~~~v~~~~G~p-------~~~~i~~l~~~--g 136 (330)
T PF03060_consen 79 EEDAWPKELGNAVLELCIEEGVP-----------FEEQLDVALEA--KPDVVSFGFGLP-------PPEVIERLHAA--G 136 (330)
T ss_dssp H-HHHHHHTHHHHHHHHHHTT-S-----------HHHHHHHHHHS----SEEEEESSSC--------HHHHHHHHHT--T
T ss_pred hhhhhhhhhHHHHHHHHHHhCcc-----------ccccccccccc--ceEEEEeecccc-------hHHHHHHHHHc--C
Confidence 1 1222221111 11222111111 1112211 0111 13457778776 6
Q ss_pred CceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCc
Q 000266 1154 ARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQL 1233 (1760)
Q Consensus 1154 ~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGI 1233 (1760)
..|+.+. +-...|..+.++|+|+|+++|.++|+|... +.+ ++...++++.+.+ ++|||++|||
T Consensus 137 i~v~~~v----~s~~~A~~a~~~G~D~iv~qG~eAGGH~g~-----~~~-~~~~L~~~v~~~~-------~iPViaAGGI 199 (330)
T PF03060_consen 137 IKVIPQV----TSVREARKAAKAGADAIVAQGPEAGGHRGF-----EVG-STFSLLPQVRDAV-------DIPVIAAGGI 199 (330)
T ss_dssp -EEEEEE----SSHHHHHHHHHTT-SEEEEE-TTSSEE--------SSG--HHHHHHHHHHH--------SS-EEEESS-
T ss_pred Ccccccc----CCHHHHHHhhhcCCCEEEEeccccCCCCCc-----ccc-ceeeHHHHHhhhc-------CCcEEEecCc
Confidence 6666664 445678889999999999999999987751 112 5777788888774 4999999999
Q ss_pred CCHHHHHHHHHcCCCccccchhHHHHhccc
Q 000266 1234 KTGRDVAIAALLGAEEFGFSTAPLITLGCI 1263 (1760)
Q Consensus 1234 rtG~DVaKAlaLGAdaVg~GTa~L~Algc~ 1263 (1760)
.+|++++.|++|||++|++||+|+.+-.|.
T Consensus 200 ~dg~~iaaal~lGA~gV~~GTrFl~t~Es~ 229 (330)
T PF03060_consen 200 ADGRGIAAALALGADGVQMGTRFLATEESG 229 (330)
T ss_dssp -SHHHHHHHHHCT-SEEEESHHHHTSTTS-
T ss_pred CCHHHHHHHHHcCCCEeecCCeEEeccccc
Confidence 999999999999999999999999977664
|
13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A. |
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.7e-13 Score=164.79 Aligned_cols=164 Identities=15% Similarity=0.101 Sum_probs=117.7
Q ss_pred HHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCC
Q 000266 1141 AQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVAND 1220 (1760)
Q Consensus 1141 aqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~g 1220 (1760)
.+.|.++|+.+|+.+|+++-+.. ...|..+.++|||+|.|++|.|..+.++. ....|.|...++..+.+.+..
T Consensus 277 ~~~i~~ik~~~p~~~vi~g~v~t---~e~a~~a~~aGaD~i~vg~g~G~~~~t~~--~~~~g~~~~~~i~~~~~~~~~-- 349 (505)
T PLN02274 277 LEMIKYIKKTYPELDVIGGNVVT---MYQAQNLIQAGVDGLRVGMGSGSICTTQE--VCAVGRGQATAVYKVASIAAQ-- 349 (505)
T ss_pred HHHHHHHHHhCCCCcEEEecCCC---HHHHHHHHHcCcCEEEECCCCCccccCcc--ccccCCCcccHHHHHHHHHHh--
Confidence 46799999999999999986543 35678899999999999877665444432 123455654455555554433
Q ss_pred CCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhh----------------
Q 000266 1221 LRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVL---------------- 1284 (1760)
Q Consensus 1221 lr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~L---------------- 1284 (1760)
.++|||+||||+++.||+||+++||++|++||+|..+..|. -.....+...
T Consensus 350 --~~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~~t~Esp-----------~~~~~~~g~~~k~yrgmgs~~a~~~~ 416 (505)
T PLN02274 350 --HGVPVIADGGISNSGHIVKALTLGASTVMMGSFLAGTTEAP-----------GEYFYQDGVRVKKYRGMGSLEAMTKG 416 (505)
T ss_pred --cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhcccccCC-----------cceeeeCCeEEEEEeccchHHHHhcc
Confidence 25999999999999999999999999999999988765442 2222111110
Q ss_pred ----------HhhcCCC-------HHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCC
Q 000266 1285 ----------REKFAGE-------PEHVINFFFMLAEELREIMSQLGFRTITEMIGR 1324 (1760)
Q Consensus 1285 ----------r~~~~g~-------~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr 1324 (1760)
++.++.+ .-.|.+++..+...||..|..+|.++|.||..+
T Consensus 417 ~~~ry~~~~~~~~v~egv~~~v~~~g~~~~~~~~~~~g~~~~~~y~g~~~~~~~~~~ 473 (505)
T PLN02274 417 SDQRYLGDTAKLKIAQGVSGAVADKGSVLKFVPYTMQAVKQGFQDLGASSLQSAHEL 473 (505)
T ss_pred ccccccccCcccccCCceEEecccCCCHHHHHHHHHHHHHHhhhhcCcchHHHHHhh
Confidence 0111111 134788999999999999999999999999655
|
|
| >cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.5e-13 Score=151.36 Aligned_cols=135 Identities=30% Similarity=0.329 Sum_probs=101.1
Q ss_pred cEEEEeecccCCCCCCCCCCCCcee------eeccccccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCCh
Q 000266 323 YMALIHSRFSTNTFPSWDRAQPMRI------LGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSD 396 (1760)
Q Consensus 323 ~~ai~H~RySTNT~psw~~AQPfr~------laHNGEInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SD 396 (1760)
.++|+|+|++|++.. .++|||.. ++|||||+|+...++.+. ..+. .+.+.||
T Consensus 41 ~~~lgh~rl~~~~~~--~~~qP~~~~~~~~~~~~nG~i~N~~~L~~~l~-------------------~~~~-~~~~~sD 98 (220)
T cd00712 41 GVALGHRRLSIIDLS--GGAQPMVSEDGRLVLVFNGEIYNYRELRAELE-------------------ALGH-RFRTHSD 98 (220)
T ss_pred CEEEEEEeeeecCcc--cCCCCeEeCCCCEEEEEEEEEeCHHHHHHHHH-------------------hcCC-cCCCCCh
Confidence 579999999999875 89999953 699999998877666442 2222 2468999
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHHHHHHHHHHHhccCCCCCCcEEEecCC--ceEEEccCCCCCC
Q 000266 397 SGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDG--RYLGATLDRNGLR 474 (1760)
Q Consensus 397 Se~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e~rafYey~s~lmepwdGPa~iv~tdG--~~igA~lDrnGLR 474 (1760)
+|++.++++ +.| ++++ +.++|+|++++.|. +.+.++|||.|.|
T Consensus 99 ~e~l~~~~~---~~g---~~~~-----------------------------~~l~G~fa~vi~d~~~~~l~~~rD~~G~~ 143 (220)
T cd00712 99 TEVILHLYE---EWG---EDCL-----------------------------ERLNGMFAFALWDKRKRRLFLARDRFGIK 143 (220)
T ss_pred HHHHHHHHH---HHh---HHHH-----------------------------HHhhheEEEEEEECCCCEEEEEECCCCCE
Confidence 999877654 333 2222 33599998887654 5566689999999
Q ss_pred CceEEEEeCCEEEEEeccccccCCCC---------------------------cEEEccccCCCcEEEEEc
Q 000266 475 PGRFYITHSGRVIMASEVGVVDIPPE---------------------------DVLRKGRLNPGMMLLVDF 518 (1760)
Q Consensus 475 Plr~~~t~d~~~i~ASE~galdi~~~---------------------------~vv~kgrl~PGeml~vd~ 518 (1760)
|| |+...++.+++|||..+|...+. .|. +|.||.++.++.
T Consensus 144 pL-y~~~~~~~~~~aSe~~~l~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~~V~---~l~pG~~l~~~~ 210 (220)
T cd00712 144 PL-YYGRDGGGLAFASELKALLALPGVPRELDEAALAEYLAFQYVPAPRTIFKGIR---KLPPGHYLTVDP 210 (220)
T ss_pred ee-EEEEECCEEEEEcchHHHHhcCCCCCCcCHHHHHHHHhcCCCCCCCchhcCce---EECCceEEEEEC
Confidence 99 88888889999999998832111 343 799999999986
|
Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia. |
| >cd00982 gltB_C gltb_C | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.2e-13 Score=153.27 Aligned_cols=146 Identities=22% Similarity=0.305 Sum_probs=112.4
Q ss_pred CCCCchhHHHHHHHHHHHHHHcCC---cEEEEecccccCcchhhhhhHHHHHhhccCCCCCccEEEEEecCccchhhhcC
Q 000266 1369 DHGLDMALDQKLIKLSKAALEKAL---PVYIETPVCNVNRAVGTMLSHEVTKRYHLVGLPADTIHIKLTGSAGQSVGAFL 1445 (1760)
Q Consensus 1369 ~~~~~~~ld~~~~~~~~~~l~~~~---~~~~~~~i~n~dR~vG~~Ls~~i~~~~g~~gl~~~~i~i~~~G~aGq~~Gaf~ 1445 (1760)
|..+...|..++.+. ..+++. ++.+.+.=. ...++|+.+ +. -++|+++|+|++++|..|
T Consensus 30 dRsvGt~ls~~i~~~---~g~~gl~~~~i~i~~~G~-aGq~~Gaf~-------------~~-G~~i~v~G~A~dyvGk~m 91 (251)
T cd00982 30 DRAVGTMLSGEIAKR---YGEEGLPEDTIKIKFEGS-AGQSFGAFL-------------AK-GVTLELEGDANDYVGKGL 91 (251)
T ss_pred ccchhhHHHHHHHHH---hcccCCCCCcEEEEEEcC-CCceeeeec-------------CC-CCEEEEEecccccccccc
Confidence 444555565555443 333333 344444333 334467763 22 245777999999999999
Q ss_pred CCCcEEEEEecCC------------chhhcCCCCceEEEeCCCCCCCCCCccccchhhhhccCcccEEEEeccccccccc
Q 000266 1446 CPGILLELEGDSN------------DYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCV 1513 (1760)
Q Consensus 1446 ~~G~~i~v~G~A~------------DyvGkgmsGG~IvV~g~~~~~~~~~~~~i~Gn~~~yGatgG~i~v~G~aGeR~gv 1513 (1760)
.|++|+|.|+++ ++++.||+||+|.|+|++ |+-++-.|+||.+.|.| +|+++|.
T Consensus 92 -~GG~IvV~g~~~~~~~~~~~~i~Gn~~~~GmtgG~i~i~G~A------------G~R~gvr~sG~~iVV~G-~Gd~~~E 157 (251)
T cd00982 92 -SGGRIVVRPPKDATFKPEENIIIGNVCLYGATSGEAFIRGRA------------GERFAVRNSGATAVVEG-VGDHGCE 157 (251)
T ss_pred -cCCEEEEECCCcccccccccceehhhhhhccCCCEEEEeccc------------cceeeeccCCCEEEEEe-cccceec
Confidence 899999999965 588999999999999995 55555579999999999 8999999
Q ss_pred ccCCcEEEEcC-CCccccccccCcEEEEeCCCCC
Q 000266 1514 RNSGARAVVEG-VGDHGCEYMTGGTVVVLGKTGR 1546 (1760)
Q Consensus 1514 r~sG~~iVV~G-~Gd~~~eyMtgG~ivVlG~~G~ 1546 (1760)
+|.||+|||.| +|.+.|.-|+||+++|.|....
T Consensus 158 yMtGG~ivVlG~~G~~~gaGM~gG~iyv~~~~~~ 191 (251)
T cd00982 158 YMTGGTVVVLGKTGRNFAAGMSGGVAYVLDEDGD 191 (251)
T ss_pred cccCCEEEEECCCCcCcccCCCCCEEEEECCcCC
Confidence 99999999999 5999999999999999998654
|
This domain is found at the C-terminus of the large subunit (gltB) of glutamate synthase (GltS). GltS encodes a complex iron-sulfur flavoprotein that catalyzes the synthesis of L-glutamate from L-glutamine and 2-oxoglutarate. It requires the transfer of ammonia and electrons among three distinct active centers that carry out L-Gln hydrolysis, conversion of 2-oxoglutarate into L-Glu, and electron uptake from a donor. These catalytic sites appear to occur in other domains within the protein, and not the domain in this CD. This particular domain has no known function, but it likely has a structural role as it interacts with the amidotransferase and FMN-binding domains of gltS. |
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.1e-12 Score=152.42 Aligned_cols=189 Identities=21% Similarity=0.290 Sum_probs=131.9
Q ss_pred cceEecCCCcccCcHHHHHHHHHHHHHcCCceeccCCCCCccccCcCCCCCCchhhhheeecccCCcCCChhhhcCchhH
Q 000266 1009 KRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRSAIKQVASGRFGVSSYYLTNADEL 1088 (1760)
Q Consensus 1009 ~Pf~i~aMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGge~~e~~~~~~~g~~~~~~s~IkQvasgrFGVt~~~L~~a~~i 1088 (1760)
.|++.+||++-+ ++ .|+.|++++|+....|.+..+++.+. .....+++..+.+||++..+......-
T Consensus 12 ~Pii~apM~~~s-~~----~la~avs~aGglG~l~~~~~~~~~l~--------~~i~~~~~~t~~pfgvn~~~~~~~~~~ 78 (307)
T TIGR03151 12 YPIFQGGMAWVA-TG----SLAAAVSNAGGLGIIGAGNAPPDVVR--------KEIRKVKELTDKPFGVNIMLLSPFVDE 78 (307)
T ss_pred CCEEcCCCCCCC-CH----HHHHHHHhCCCcceeccccCCHHHHH--------HHHHHHHHhcCCCcEEeeecCCCCHHH
Confidence 599999998632 33 59999999999999988877777663 234567777888999986543221111
Q ss_pred HHhhhccCCCCCCCCCCCccchHHHHHHhCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEccccCHHH
Q 000266 1089 QIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGV 1168 (1760)
Q Consensus 1089 qIKiaQGAKpGeGG~Lpg~KV~~~IA~~R~~~pG~~lisP~~hhDiySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~ 1168 (1760)
++.+. +. .++.+++-. +-.+ .++|.++|.. +.+|+.. ++...
T Consensus 79 ~~~~~----------------------~~---~~v~~v~~~----~g~p---~~~i~~lk~~--g~~v~~~----v~s~~ 120 (307)
T TIGR03151 79 LVDLV----------------------IE---EKVPVVTTG----AGNP---GKYIPRLKEN--GVKVIPV----VASVA 120 (307)
T ss_pred HHHHH----------------------Hh---CCCCEEEEc----CCCc---HHHHHHHHHc--CCEEEEE----cCCHH
Confidence 11110 00 122222211 0111 2467888876 5555544 34456
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCC
Q 000266 1169 IASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAE 1248 (1760)
Q Consensus 1169 iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAd 1248 (1760)
.|..+.++|+|+|+++|++.|++... .|+...|+++.+.+ ++|||++|||.++.|+++++++||+
T Consensus 121 ~a~~a~~~GaD~Ivv~g~eagGh~g~--------~~~~~ll~~v~~~~-------~iPviaaGGI~~~~~~~~al~~GA~ 185 (307)
T TIGR03151 121 LAKRMEKAGADAVIAEGMESGGHIGE--------LTTMALVPQVVDAV-------SIPVIAAGGIADGRGMAAAFALGAE 185 (307)
T ss_pred HHHHHHHcCCCEEEEECcccCCCCCC--------CcHHHHHHHHHHHh-------CCCEEEECCCCCHHHHHHHHHcCCC
Confidence 78889999999999999987765321 24567788877653 5899999999999999999999999
Q ss_pred ccccchhHHHHhccc
Q 000266 1249 EFGFSTAPLITLGCI 1263 (1760)
Q Consensus 1249 aVg~GTa~L~Algc~ 1263 (1760)
+|++||.|+.+..|.
T Consensus 186 gV~iGt~f~~t~Es~ 200 (307)
T TIGR03151 186 AVQMGTRFLCAKECN 200 (307)
T ss_pred EeecchHHhcccccC
Confidence 999999999987663
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.6e-12 Score=160.08 Aligned_cols=175 Identities=18% Similarity=0.195 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHH
Q 000266 1138 EDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLV 1217 (1760)
Q Consensus 1138 edLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~ 1217 (1760)
+.+.+.|.++|..+|+.||+++-+.. ...|..+.++|||+|.|.+..|.-+.++ ....||.|+..+|.++.+.+.
T Consensus 254 ~~vl~~i~~i~~~~p~~~vi~g~v~t---~e~a~~l~~aGad~i~vg~g~gs~~~~r--~~~~~g~p~~~~~~~~~~~~~ 328 (486)
T PRK05567 254 EGVLDRVREIKAKYPDVQIIAGNVAT---AEAARALIEAGADAVKVGIGPGSICTTR--IVAGVGVPQITAIADAAEAAK 328 (486)
T ss_pred hhHHHHHHHHHhhCCCCCEEEeccCC---HHHHHHHHHcCCCEEEECCCCCccccce--eecCCCcCHHHHHHHHHHHhc
Confidence 45778899999999999999986533 4667889999999999854332222233 356899999999999988764
Q ss_pred hCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhh-------------
Q 000266 1218 ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVL------------- 1284 (1760)
Q Consensus 1218 ~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~L------------- 1284 (1760)
. ..++||+||||+++.||+||++|||++|.+|+++--+.. +|-.+...+...
T Consensus 329 ~----~~~~viadGGi~~~~di~kAla~GA~~v~~G~~~a~~~e-----------~pg~~~~~~g~~~k~y~gm~s~~a~ 393 (486)
T PRK05567 329 K----YGIPVIADGGIRYSGDIAKALAAGASAVMLGSMLAGTEE-----------APGEVELYQGRSYKSYRGMGSLGAM 393 (486)
T ss_pred c----CCCeEEEcCCCCCHHHHHHHHHhCCCEEEECcccccccc-----------CCCceEEECCEEEEEEeccchHHHH
Confidence 3 258999999999999999999999999999998654432 232222211100
Q ss_pred ---------------HhhcCCC-------HHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCceeeccc
Q 000266 1285 ---------------REKFAGE-------PEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVDK 1332 (1760)
Q Consensus 1285 ---------------r~~~~g~-------~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~dLl~~~~ 1332 (1760)
.+++..+ ...|.+++..+...||..|..+|.++|.||..+..+...+.
T Consensus 394 ~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~t~ 463 (486)
T PRK05567 394 SKGSSDRYFQSVNAADKLVPEGIEGRVPYKGPLSEIIHQLMGGLRSGMGYTGAATIEELREKAEFVRITG 463 (486)
T ss_pred hcccccccccccccccccCCCceEEeCCCCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHhcCeEEEECh
Confidence 0011100 12388899999999999999999999999988888877654
|
|
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.39 E-value=3e-12 Score=158.13 Aligned_cols=164 Identities=17% Similarity=0.190 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHH
Q 000266 1138 EDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLV 1217 (1760)
Q Consensus 1138 edLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~ 1217 (1760)
+.+.+.|.++|+.+|++||+++-+.. ...|..+.++|||+|.|.-+.|+++.++. ...+|.|...++.++++++.
T Consensus 250 ~~~~~~i~~i~~~~~~~~vi~G~v~t---~~~a~~l~~aGad~i~vg~g~G~~~~t~~--~~~~g~p~~~~i~~~~~~~~ 324 (450)
T TIGR01302 250 IYVIDSIKEIKKTYPDLDIIAGNVAT---AEQAKALIDAGADGLRVGIGPGSICTTRI--VAGVGVPQITAVYDVAEYAA 324 (450)
T ss_pred hHHHHHHHHHHHhCCCCCEEEEeCCC---HHHHHHHHHhCCCEEEECCCCCcCCccce--ecCCCccHHHHHHHHHHHHh
Confidence 45778899999998999999987543 36677899999999999656677766553 45789999999999998876
Q ss_pred hCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhh-------------
Q 000266 1218 ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVL------------- 1284 (1760)
Q Consensus 1218 ~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~L------------- 1284 (1760)
.. ++|||+||||+++.||+||+++||++|++|+.|.-+..| |-.+...+...
T Consensus 325 ~~----~vpviadGGi~~~~di~kAla~GA~~V~~G~~~a~~~e~-----------pg~~~~~~g~~~k~yrgm~s~~a~ 389 (450)
T TIGR01302 325 QS----GIPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGTTES-----------PGEYEIINGRRYKQYRGMGSLGAM 389 (450)
T ss_pred hc----CCeEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcCCcC-----------CCceEEECCEEEEEEeccchHHHH
Confidence 43 589999999999999999999999999999987655433 33332222111
Q ss_pred ---------------HhhcCCC-------HHHHHHHHHHHHHHHHHHHHhcCCCChhhh
Q 000266 1285 ---------------REKFAGE-------PEHVINFFFMLAEELREIMSQLGFRTITEM 1321 (1760)
Q Consensus 1285 ---------------r~~~~g~-------~e~V~n~~~~l~~ELr~~Ma~lG~~si~EL 1321 (1760)
.+.+..+ .-.|.+++..+...||..|..+|..|+.||
T Consensus 390 ~~~~~~ry~~~~~~~~~~~~egv~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~ 448 (450)
T TIGR01302 390 TKGSSDRYLQDENKTKKFVPEGVEGAVPYKGSVLELLPQLVGGLKSGMGYVGARSIDEL 448 (450)
T ss_pred hccccccccccccccccccCCceEEcccccCcHHHHHHHHHHHHHHhhhccCcCcHHHH
Confidence 0111111 134889999999999999999999999998
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS) | Back alignment and domain information |
|---|
Probab=99.38 E-value=2e-12 Score=152.13 Aligned_cols=196 Identities=17% Similarity=0.168 Sum_probs=133.6
Q ss_pred cceEecCCCcccCcHHHHHHHHHHHHHcCCceeccCCCCCccccCcCCCCCCchhhhheeec-ccCCcCCChhhhcCc--
Q 000266 1009 KRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRSAIKQV-ASGRFGVSSYYLTNA-- 1085 (1760)
Q Consensus 1009 ~Pf~i~aMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGge~~e~~~~~~~g~~~~~~s~IkQv-asgrFGVt~~~L~~a-- 1085 (1760)
.|++.+||++.+-.+ .||.|++++|+....+.+..+++++. .....+++. .+.+|||+...+...
T Consensus 3 yPIiqgpM~~vs~~~----~LaaAVS~AGgLG~la~~~~~~e~l~--------~~i~~~~~l~tdkPfGVnl~~~~~~~~ 70 (320)
T cd04743 3 YPIVQGPMTRVSDVA----EFAVAVAEGGGLPFIALALMRGEQVK--------ALLEETAELLGDKPWGVGILGFVDTEL 70 (320)
T ss_pred CCEECCCcCCCCCcH----HHHHHHHhCCccccCCCCCCCHHHHH--------HHHHHHHHhccCCCeEEEEeccCCCcc
Confidence 599999999766544 49999999999999988888888763 223456775 678999986322111
Q ss_pred hhHHHhhhccCCCCCCCCCCCccchHHHHHHhCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEccccC
Q 000266 1086 DELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAG 1165 (1760)
Q Consensus 1086 ~~iqIKiaQGAKpGeGG~Lpg~KV~~~IA~~R~~~pG~~lisP~~hhDiySiedLaqlI~~Lk~~~p~~pV~VKlv~~~G 1165 (1760)
..-++.+..-.+| -.-.++. ..+. + +..||+. +.+|+... +
T Consensus 71 ~~~~l~vi~e~~v-----------------------~~V~~~~------G~P~---~-~~~lk~~--Gi~v~~~v----~ 111 (320)
T cd04743 71 RAAQLAVVRAIKP-----------------------TFALIAG------GRPD---Q-ARALEAI--GISTYLHV----P 111 (320)
T ss_pred hHHHHHHHHhcCC-----------------------cEEEEcC------CChH---H-HHHHHHC--CCEEEEEe----C
Confidence 1112222111111 1111111 1122 2 5678776 55665554 3
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCC---CCCceEEEEcCCcCCHHHHHHH
Q 000266 1166 VGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVAND---LRGRTILQTDGQLKTGRDVAIA 1242 (1760)
Q Consensus 1166 vg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~g---lr~rV~LiadGGIrtG~DVaKA 1242 (1760)
....|..+.++|||+|++.|+++|+|..+ +++...++++.+.+.... -..+||||++|||.+|++++.+
T Consensus 112 s~~~A~~a~~~GaD~vVaqG~EAGGH~G~--------~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaa 183 (320)
T cd04743 112 SPGLLKQFLENGARKFIFEGRECGGHVGP--------RSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMV 183 (320)
T ss_pred CHHHHHHHHHcCCCEEEEecCcCcCCCCC--------CCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHH
Confidence 34668889999999999999999987643 234456677777654211 1126999999999999999999
Q ss_pred HHcCC--------CccccchhHHHHhccc
Q 000266 1243 ALLGA--------EEFGFSTAPLITLGCI 1263 (1760)
Q Consensus 1243 laLGA--------daVg~GTa~L~Algc~ 1263 (1760)
++||| ++|+|||+||.+-.|.
T Consensus 184 laLGA~~~~~Ga~~GV~mGTrFl~t~Es~ 212 (320)
T cd04743 184 SALAAPLAERGAKVGVLMGTAYLFTEEAV 212 (320)
T ss_pred HHcCCcccccccccEEEEccHHhcchhhc
Confidence 99999 8999999999987764
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A | Back alignment and domain information |
|---|
Probab=99.36 E-value=5e-13 Score=137.96 Aligned_cols=113 Identities=29% Similarity=0.270 Sum_probs=58.0
Q ss_pred eecccCCCCCCCCCCCCce-------eeeccccccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHH
Q 000266 328 HSRFSTNTFPSWDRAQPMR-------ILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAF 400 (1760)
Q Consensus 328 H~RySTNT~psw~~AQPfr-------~laHNGEInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~l 400 (1760)
|+|||| ..+...+|||. .++|||||+|....++.+ ...+. .+.+.||+|++
T Consensus 1 h~rl~~--~~~~~~~QP~~~~~~~~~~l~~nG~i~N~~eL~~~l-------------------~~~g~-~~~~~~D~e~i 58 (125)
T PF13537_consen 1 HVRLST--DDSDEGAQPFVSSEDGELVLVFNGEIYNREELRREL-------------------EERGH-QFSSDSDSELI 58 (125)
T ss_dssp --------------------------EEEEEEEES-HHHHHHTS-------------------SSS----S--SSHHHHH
T ss_pred Cccccc--ccccccccccccccccCEEEEEEEEEEChHHHHHHh-------------------hhccc-ccCCCCCHHHH
Confidence 999999 55678999998 379999999655444322 12222 23679999998
Q ss_pred HHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHHHHHHHHHHHhccCCCCCCcEEEecCCce--EEEccCCCCCCCceE
Q 000266 401 DGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDGRY--LGATLDRNGLRPGRF 478 (1760)
Q Consensus 401 d~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e~rafYey~s~lmepwdGPa~iv~tdG~~--igA~lDrnGLRPlr~ 478 (1760)
.++++. |.+|...+++..+|+|++++.|.+. +.++|||.|.||| |
T Consensus 59 ~~~~~~--------------------------------~~~~~~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~rpL-y 105 (125)
T PF13537_consen 59 LHLYEE--------------------------------YREWGEDFLKRLDGPFAFVIWDKDKKRLFLARDRFGIRPL-Y 105 (125)
T ss_dssp HHHHHH-----------------------------------HGGGGGGT--EEEEEEEEETTE--EEEEE-TT--S---E
T ss_pred HHHHHH--------------------------------HHHHHHHHHHhCCceEEEEEEeCCCcEEEEEECCCCCCCe-E
Confidence 877653 2233334566789999988876644 7779999999999 8
Q ss_pred EEEeC-CEEEEEeccccc
Q 000266 479 YITHS-GRVIMASEVGVV 495 (1760)
Q Consensus 479 ~~t~d-~~~i~ASE~gal 495 (1760)
+...+ +.+++|||..+|
T Consensus 106 y~~~~g~~~~faSe~~~L 123 (125)
T PF13537_consen 106 YGRTDGNGLAFASEIKAL 123 (125)
T ss_dssp EEEETT-EEEEESSHHHH
T ss_pred EEEeCCCEEEEEEcHHHh
Confidence 88886 699999998765
|
|
| >COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.4e-12 Score=155.81 Aligned_cols=180 Identities=21% Similarity=0.222 Sum_probs=137.6
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCce----eeeccccccChh
Q 000266 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMR----ILGHNGEINTLR 358 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr----~laHNGEInt~~ 358 (1760)
+.++|+.++..++ ++|..|.+.++..-+. ...+.+.++|+|+|+.|-|.|+-.||||-. .++|||=|-||.
T Consensus 31 DSaGiav~~~~~l~~~k~~Gkv~~l~~~~~----~~~~~~~~gIgHTRWATHG~P~~~NAHPh~~~~~avVHNGIIeN~~ 106 (597)
T COG0449 31 DSAGIAVVGDGSLNVRKQVGKISNLEELLN----KEPLIGGVGIAHTRWATHGGPTRANAHPHSDGEFAVVHNGIIENFA 106 (597)
T ss_pred CcccEEEEeCCeEEEEEccCCHHHHHhhhc----ccccCCceeeeeccccCCCCCCcCCCCCCCCCCEEEEeCchhhCHH
Confidence 4689999976666 9999999999833222 133789999999999999999999999984 379999999888
Q ss_pred hHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHHHHH
Q 000266 359 GNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKA 438 (1760)
Q Consensus 359 gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e~ra 438 (1760)
..+.++.+++ . .|.+.||||++.++++...+.+ +.+|+..++
T Consensus 107 eLr~eL~~~G-------------------~-~F~S~TDTEVi~hLi~~~~~~~--~~~a~~~~l---------------- 148 (597)
T COG0449 107 ELKEELEAKG-------------------Y-VFKSDTDTEVIAHLLEEIYDTS--LLEAVKKVL---------------- 148 (597)
T ss_pred HHHHHHHhcC-------------------C-EEecCCchHHHHHHHHHHHHhH--HHHHHHHHH----------------
Confidence 8777665443 3 3578999999999999776655 788887664
Q ss_pred HHHHHHhccCCCCCCcEEEec---C-CceEEEccCCCCCCCceEEEEeCCEEEEEeccccccCCCCcEEEccccCCCcEE
Q 000266 439 LYEYFSALMEPWDGPALISFT---D-GRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMML 514 (1760)
Q Consensus 439 fYey~s~lmepwdGPa~iv~t---d-G~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~galdi~~~~vv~kgrl~PGeml 514 (1760)
..+.|.|++++. + +++++| ||| -|| +++..++..++||..-++--.-.+++ -|+.||+.
T Consensus 149 ---------~~l~Gsyal~~~~~~~p~~i~~a---r~~-sPL-~iG~g~~e~f~aSD~~a~l~~t~~~~---~l~dgd~~ 211 (597)
T COG0449 149 ---------KRLEGSYALLCTHSDFPDELVAA---RKG-SPL-VIGVGEGENFLASDVSALLNFTRRFV---YLEEGDIA 211 (597)
T ss_pred ---------HHhcceeEEEEEecCCCCeEEEE---cCC-CCe-EEEecCCcceEecChhhhhhhhceEE---EeCCCCEE
Confidence 446999876653 2 355554 666 699 88988889999999888732334555 58888888
Q ss_pred EEEcCCCE
Q 000266 515 LVDFEKRI 522 (1760)
Q Consensus 515 ~vd~~~g~ 522 (1760)
.|..++=.
T Consensus 212 ~~~~~~v~ 219 (597)
T COG0449 212 KLTTDGVS 219 (597)
T ss_pred EEECCcEE
Confidence 88666544
|
|
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.4e-12 Score=156.50 Aligned_cols=176 Identities=13% Similarity=0.059 Sum_probs=125.4
Q ss_pred HHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHh-
Q 000266 1140 LAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVA- 1218 (1760)
Q Consensus 1140 LaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~- 1218 (1760)
..+.|+++|+.+|. ++.|+.. ++.....|..+.++|||+|.|+.++|.-+.++. ....|.|...++.++.+++..
T Consensus 270 ~~~~i~~ir~~~~~-~~~V~aG-nV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~--~~~~g~~~~~ai~~~~~a~~~~ 345 (502)
T PRK07107 270 QKRTLDWIREKYGD-SVKVGAG-NVVDREGFRYLAEAGADFVKVGIGGGSICITRE--QKGIGRGQATALIEVAKARDEY 345 (502)
T ss_pred HHHHHHHHHHhCCC-CceEEec-cccCHHHHHHHHHcCCCEEEECCCCCcCccccc--ccCCCccHHHHHHHHHHHHHHH
Confidence 35679999998863 3444431 112234677799999999999666554444442 356789999999999987643
Q ss_pred ---CCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHh---------
Q 000266 1219 ---NDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLRE--------- 1286 (1760)
Q Consensus 1219 ---~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~--------- 1286 (1760)
.| .++|||+||||+++.||+||+++|||+|++|+.+--+. .+|-.+...+....|
T Consensus 346 ~~~~g--~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag~~-----------espg~~~~~~g~~~k~yrgm~s~~ 412 (502)
T PRK07107 346 FEETG--VYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFARFD-----------ESPTNKVNINGNYMKEYWGEGSNR 412 (502)
T ss_pred HhhcC--CcceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhccc-----------cCCCcEEEECCEEEEEeecccCHh
Confidence 23 25999999999999999999999999999999764432 334333322221111
Q ss_pred -----hcC----------CC-------HHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCceeeccc
Q 000266 1287 -----KFA----------GE-------PEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVDK 1332 (1760)
Q Consensus 1287 -----~~~----------g~-------~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~dLl~~~~ 1332 (1760)
+|. .+ ...|.+++..+...||..|..+|..+|.||..+..+...+.
T Consensus 413 a~~~~ry~~~~~~~~~~~egv~~~v~~~g~~~~~~~~~~~glrs~~~y~g~~~i~~l~~~~~f~~~t~ 480 (502)
T PRK07107 413 ARNWQRYDLGGDKKLSFEEGVDSYVPYAGSLKDNVAITLSKVRSTMCNCGALSIPELQQKAKITLVSS 480 (502)
T ss_pred hhhccccccccccccccCCccEEEecCCCCHHHHHHHHHHHHHHhhhccCCCcHHHHHhCCeEEEECc
Confidence 111 00 12388899999999999999999999999988887776653
|
|
| >COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.3e-12 Score=150.39 Aligned_cols=202 Identities=23% Similarity=0.263 Sum_probs=134.6
Q ss_pred ccccceEecCCCcccCcHHHHHHHHHHHHHcCCceeccCCCCCccccCcCCCCCCchhhhheeecccCC-----cC----
Q 000266 1006 EIVKRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRSAIKQVASGR-----FG---- 1076 (1760)
Q Consensus 1006 ~i~~Pf~i~aMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGge~~e~~~~~~~g~~~~~~s~IkQvasgr-----FG---- 1076 (1760)
.|..||+.++|.+ +| +..||.|+++.|+....+.++...+.+. .....+++.+..+ |+
T Consensus 12 ~i~~PIiq~gM~~--vs---~~~LA~Avs~aGglG~ia~~~~~~e~l~--------~~i~~~~~~~~~p~~~~~f~~~~~ 78 (336)
T COG2070 12 GIKYPIIQGGMAG--VS---TPELAAAVSNAGGLGIIASGGLPAEQLR--------AEIRKIRALTDKPFVANNFGSAPA 78 (336)
T ss_pred CccCCeecCCccc--cC---cHHHHHHHhccCCccccccccCCHHHHH--------HHHHHHHHhcCCcchhcccccccc
Confidence 3456999999986 33 2369999999999887777777666553 2345677777777 44
Q ss_pred -CChhhhcCchhHHHhhhccCCCCCCCCCCCccchHHHHHHhCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHhCCCCc
Q 000266 1077 -VSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGAR 1155 (1760)
Q Consensus 1077 -Vt~~~L~~a~~iqIKiaQGAKpGeGG~Lpg~KV~~~IA~~R~~~pG~~lisP~~hhDiySiedLaqlI~~Lk~~~p~~p 1155 (1760)
++...+... .++... .+ ...+. ..++.+++|.--. .+ .++|..++.. +.+
T Consensus 79 ~v~~~~l~~~-------~~~~~~---------~~---~~ii~--~~~vpvv~~~~g~---~~---~~~i~~~~~~--g~~ 129 (336)
T COG2070 79 PVNVNILVAR-------RNAAEA---------GV---DAIIE--GAGVPVVSTSFGA---PP---AEFVARLKAA--GIK 129 (336)
T ss_pred cchhheeccc-------ccchHH---------hh---hhHHh--cCCCCEEeccCCC---Cc---HHHHHHHHHc--CCe
Confidence 333222210 000000 00 00111 1233334432111 11 2346667664 566
Q ss_pred eEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCC
Q 000266 1156 ISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKT 1235 (1760)
Q Consensus 1156 V~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrt 1235 (1760)
|+.+.+ ....|..+.++|+|+|++.|.++|+|... ....+.++..++++.+... .||||++|||.+
T Consensus 130 v~~~v~----~~~~A~~~~~~G~d~vI~~g~eAGGH~g~----~~~~~~t~~Lv~ev~~~~~------~iPViAAGGI~d 195 (336)
T COG2070 130 VIHSVI----TVREALKAERAGADAVIAQGAEAGGHRGG----VDLEVSTFALVPEVVDAVD------GIPVIAAGGIAD 195 (336)
T ss_pred EEEEeC----CHHHHHHHHhCCCCEEEecCCcCCCcCCC----CCCCccHHHHHHHHHHHhc------CCCEEEecCccC
Confidence 766653 34678889999999999999999988664 2233456778888888742 299999999999
Q ss_pred HHHHHHHHHcCCCccccchhHHHHhccc
Q 000266 1236 GRDVAIAALLGAEEFGFSTAPLITLGCI 1263 (1760)
Q Consensus 1236 G~DVaKAlaLGAdaVg~GTa~L~Algc~ 1263 (1760)
|++++.|++|||++|+|||+|+.+-.|.
T Consensus 196 g~~i~AAlalGA~gVq~GT~Fl~t~Ea~ 223 (336)
T COG2070 196 GRGIAAALALGADGVQMGTRFLATKEAD 223 (336)
T ss_pred hHHHHHHHHhccHHHHhhhhhhcccccC
Confidence 9999999999999999999999987664
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-11 Score=152.04 Aligned_cols=175 Identities=16% Similarity=0.123 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHH
Q 000266 1138 EDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLV 1217 (1760)
Q Consensus 1138 edLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~ 1217 (1760)
+.+.++|+++|..+|++||++-.+. ....+..+.++|||+|.|.+..|.....+ ....+|.|+..++.++.+++.
T Consensus 251 ~~~~~~i~~i~~~~~~~~vi~g~~~---t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr--~~~~~g~~~~~a~~~~~~~~~ 325 (475)
T TIGR01303 251 VKMISAIKAVRALDLGVPIVAGNVV---SAEGVRDLLEAGANIIKVGVGPGAMCTTR--MMTGVGRPQFSAVLECAAEAR 325 (475)
T ss_pred HHHHHHHHHHHHHCCCCeEEEeccC---CHHHHHHHHHhCCCEEEECCcCCccccCc--cccCCCCchHHHHHHHHHHHH
Confidence 6678899999999999999985432 34567789999999999977644434333 456889999999999998877
Q ss_pred hCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccc-cChhh------------
Q 000266 1218 ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIAT-QDPVL------------ 1284 (1760)
Q Consensus 1218 ~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giat-qdp~L------------ 1284 (1760)
.. .++|||||||+++.||+||+++||++|++|+.|--+. ..|-.+.. .+...
T Consensus 326 ~~----~~~viadGgi~~~~di~kala~GA~~vm~g~~~ag~~-----------espg~~~~~~~g~~~k~yrGmgs~~a 390 (475)
T TIGR01303 326 KL----GGHVWADGGVRHPRDVALALAAGASNVMVGSWFAGTY-----------ESPGDLMRDRDGRPYKESFGMASKRA 390 (475)
T ss_pred Hc----CCcEEEeCCCCCHHHHHHHHHcCCCEEeechhhcccc-----------cCCCceEEeECCEEEEEEecccCHHH
Confidence 64 4899999999999999999999999999999764332 22322221 11000
Q ss_pred ---------------HhhcCCCHH-----------HHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCceeeccc
Q 000266 1285 ---------------REKFAGEPE-----------HVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVDK 1332 (1760)
Q Consensus 1285 ---------------r~~~~g~~e-----------~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~dLl~~~~ 1332 (1760)
.+.+..+-| .|.+++..+...||..|..+|.++|+||..+..+.+.+.
T Consensus 391 ~~~~~~~~ry~~~~~~~~v~eGv~~~~~~~~~~~g~~~~~i~~~~~gl~s~~~y~g~~~i~~~~~~~~~~~~t~ 464 (475)
T TIGR01303 391 VVARTGADNAFDRARKALFEEGISTSRMGLDPDRGGVEDLIDHIISGVRSSCTYAGASSLEEFHERAVVGVQSG 464 (475)
T ss_pred HhhccccchhhhhhccccccCceecccccccCCCCCHHHHHHHHHHHHHHHhhhcCCCcHHHHHhCCEEEEEcc
Confidence 111122222 277899999999999999999999999988888887753
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >PLN02826 dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.1e-11 Score=146.98 Aligned_cols=156 Identities=21% Similarity=0.217 Sum_probs=114.0
Q ss_pred cCCCC--CCCCCCHHHHHHHHHHHHHh--------CCCCceEEEEcccc---CHHHHHHHHHHcCCCEEEEecCCC----
Q 000266 1126 ISPPP--HHDIYSIEDLAQLIYDLKNA--------NPGARISVKLVSEA---GVGVIASGVVKGHADHVLISGHDG---- 1188 (1760)
Q Consensus 1126 isP~~--hhDiySiedLaqlI~~Lk~~--------~p~~pV~VKlv~~~---Gvg~iA~~aakaGAD~IvIsG~~G---- 1188 (1760)
.||+. ..+....+.+.+++..++.. ..+.||+||+.+.. .+..+|..+.++|+|+|++++..-
T Consensus 225 ScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~ 304 (409)
T PLN02826 225 SSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPD 304 (409)
T ss_pred CCCCCCCcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCcc
Confidence 35542 34556678888888888744 23689999998754 467788889999999999987421
Q ss_pred ---------CCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHH
Q 000266 1189 ---------GTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLIT 1259 (1760)
Q Consensus 1189 ---------GTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~A 1259 (1760)
++|+-+...++.. ....+.++++.+ ..+++||++|||.|+.|+++.+++||++|+++|++++-
T Consensus 305 dl~~~~~~~~~GGlSG~pl~~~---sl~~v~~l~~~~-----~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~~ 376 (409)
T PLN02826 305 SVLGHPHADEAGGLSGKPLFDL---STEVLREMYRLT-----RGKIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAYE 376 (409)
T ss_pred chhcccccccCCCcCCccccHH---HHHHHHHHHHHh-----CCCCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHhc
Confidence 1122111112211 234455555542 34799999999999999999999999999999998871
Q ss_pred hccccccccccCCCCCcccccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCC
Q 000266 1260 LGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGR 1324 (1760)
Q Consensus 1260 lgc~~~r~ch~~~cP~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr 1324 (1760)
+| .++..|.+||.++|...|+++++|++|.
T Consensus 377 -------------------------------Gp----~~i~~I~~eL~~~l~~~G~~si~e~iG~ 406 (409)
T PLN02826 377 -------------------------------GP----ALIPRIKAELAACLERDGFKSIQEAVGA 406 (409)
T ss_pred -------------------------------CH----HHHHHHHHHHHHHHHHcCCCCHHHHhCc
Confidence 23 2567888999999999999999999984
|
|
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-11 Score=145.74 Aligned_cols=164 Identities=16% Similarity=0.163 Sum_probs=113.4
Q ss_pred CCCCCCCCCC--H-HHHHHHHHHHHHhCCCCceEEEEcccc-CHHHHHHHHHHcCCCEEEEecCCCCCCCCcc---cccc
Q 000266 1127 SPPPHHDIYS--I-EDLAQLIYDLKNANPGARISVKLVSEA-GVGVIASGVVKGHADHVLISGHDGGTGASRW---TGIK 1199 (1760)
Q Consensus 1127 sP~~hhDiyS--i-edLaqlI~~Lk~~~p~~pV~VKlv~~~-Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~---~si~ 1199 (1760)
+|+...+.+. + +.+.+++..+++.. +.||+||+.+.. .+..+|..+.++|+|+|++.+..-+. ...+ ....
T Consensus 137 cpp~~~~~~g~~~~~~~~eil~~v~~~~-~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n~~~~~-~~d~~~~~~~~ 214 (334)
T PRK07565 137 YLPTDPDISGAEVEQRYLDILRAVKSAV-SIPVAVKLSPYFSNLANMAKRLDAAGADGLVLFNRFYQP-DIDLETLEVVP 214 (334)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHhcc-CCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEECCcCCC-CcChhhccccc
Confidence 4555444432 2 33678889998875 799999997653 45567888999999999998763221 1111 1112
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccc
Q 000266 1200 NAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIAT 1279 (1760)
Q Consensus 1200 ~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giat 1279 (1760)
.+|+++...++.+.+......-..++|||+.|||+|+.|+++++++||++|++||+++.-
T Consensus 215 ~~glsg~~~~~~al~~v~~~~~~~~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~-------------------- 274 (334)
T PRK07565 215 GLVLSTPAELRLPLRWIAILSGRVGADLAATTGVHDAEDVIKMLLAGADVVMIASALLRH-------------------- 274 (334)
T ss_pred CCCCCCchhhhHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhhh--------------------
Confidence 345544333332222111100112699999999999999999999999999999998861
Q ss_pred cChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCce
Q 000266 1280 QDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDM 1327 (1760)
Q Consensus 1280 qdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~dL 1327 (1760)
++ .++..+.+||+.+|...|+++++|++|...+
T Consensus 275 -----------g~----~~~~~i~~~L~~~l~~~g~~~i~e~~g~~~~ 307 (334)
T PRK07565 275 -----------GP----DYIGTILRGLEDWMERHGYESLQQFRGSMSQ 307 (334)
T ss_pred -----------Cc----HHHHHHHHHHHHHHHHcCCCCHHHHhccccc
Confidence 12 3678899999999999999999999885443
|
|
| >cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-11 Score=150.01 Aligned_cols=218 Identities=19% Similarity=0.185 Sum_probs=128.2
Q ss_pred cceEecCCCcccCcHHHHHHHHHHHHHcCCceeccCCCCCccccCcCCCCCCchhhhheee-cc-cCCcCCChhhhcC--
Q 000266 1009 KRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRSAIKQ-VA-SGRFGVSSYYLTN-- 1084 (1760)
Q Consensus 1009 ~Pf~i~aMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGge~~e~~~~~~~g~~~~~~s~IkQ-va-sgrFGVt~~~L~~-- 1084 (1760)
.|++.+||..|.-++ .|+.|+.++|+++..|.|+.+++++. .....|++ +. ..+||||.....+
T Consensus 14 yPii~gpMa~Giss~----eLVaAvs~AGgLG~lgag~l~~e~l~--------~~I~~ir~~lt~~~PfGVNL~~~~~~~ 81 (418)
T cd04742 14 YAYVAGAMARGIASA----ELVVAMGKAGMLGFFGAGGLPLDEVE--------QAIERIQAALGNGEPYGVNLIHSPDEP 81 (418)
T ss_pred ccEECCcccCCCCCH----HHHHHHHhCCCeeeecCCCCCHHHHH--------HHHHHHHHhccCCCCeEEeeecCCCCc
Confidence 499999998776566 59999999999999999999999874 23455666 35 6789998643111
Q ss_pred ---chhHHHhhhccCCCCCC-CCCCCccchHHHHHHhC--C---CCc-----c---cccCCCCCC-CCCCHHHHHHHHHH
Q 000266 1085 ---ADELQIKMAQGAKPGEG-GELPGHKVIGDIAVTRN--S---TAG-----V---GLISPPPHH-DIYSIEDLAQLIYD 1146 (1760)
Q Consensus 1085 ---a~~iqIKiaQGAKpGeG-G~Lpg~KV~~~IA~~R~--~---~pG-----~---~lisP~~hh-DiySiedLaqlI~~ 1146 (1760)
.+.+++-+..|.+--+- +.+. +++.+...|. . ..| . .-+|.+..- -+.++- -.++|..
T Consensus 82 ~~e~~~v~l~le~gV~~ve~sa~~~---~~p~~~~~r~~G~~~~~~g~~~~~~~ViakVsr~evAs~~f~pp-p~~~v~~ 157 (418)
T cd04742 82 ELEEGLVDLFLRHGVRVVEASAFMQ---LTPALVRYRAKGLRRDADGRVQIANRIIAKVSRPEVAEAFMSPA-PERILKK 157 (418)
T ss_pred hhHHHHHHHHHHcCCCEEEeccccC---CCcchhhHHhcCCcccccccccccceEEEecCChhhhhhhcCCC-CHHHHHH
Confidence 12233333344321110 0000 0111111110 0 000 0 000111000 000100 0234556
Q ss_pred HHHhCCCCceEEEEccccCHHHHHHHHHHcC-CCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHH----hCCC
Q 000266 1147 LKNANPGARISVKLVSEAGVGVIASGVVKGH-ADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLV----ANDL 1221 (1760)
Q Consensus 1147 Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaG-AD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~----~~gl 1221 (1760)
|++.. . + ...-|..+.+.| +|.|++. .+.|+|... .|+...|+.+.+... ..+.
T Consensus 158 L~~~G-~--i---------t~~eA~~A~~~g~aD~Ivvq-~EAGGH~g~--------~~~~~Llp~v~~l~d~v~~~~~~ 216 (418)
T cd04742 158 LLAEG-K--I---------TEEQAELARRVPVADDITVE-ADSGGHTDN--------RPLSVLLPTIIRLRDELAARYGY 216 (418)
T ss_pred HHHcC-C--C---------CHHHHHHHHhCCCCCEEEEc-ccCCCCCCC--------ccHHhHHHHHHHHHHHHhhcccc
Confidence 65541 0 0 123456688899 6999998 777777532 244455555554322 1233
Q ss_pred CCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccc
Q 000266 1222 RGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCI 1263 (1760)
Q Consensus 1222 r~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~ 1263 (1760)
..+|||+++|||.||++|+.|++|||++|++||.|+.+..|.
T Consensus 217 ~~~ipViAAGGI~tg~~vaAA~alGAd~V~~GT~flat~Ea~ 258 (418)
T cd04742 217 RRPIRVGAAGGIGTPEAAAAAFALGADFIVTGSINQCTVEAG 258 (418)
T ss_pred CCCceEEEECCCCCHHHHHHHHHcCCcEEeeccHHHhCcccc
Confidence 346999999999999999999999999999999999976653
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PRK11750 gltB glutamate synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.4e-12 Score=167.84 Aligned_cols=154 Identities=19% Similarity=0.233 Sum_probs=116.4
Q ss_pred CCCCchhHHHHHHHHHHHHHHcC---CcEEEEecccccCcchhhhhhHHHHHhhccCCCCCccEEEEEecCccchhhhcC
Q 000266 1369 DHGLDMALDQKLIKLSKAALEKA---LPVYIETPVCNVNRAVGTMLSHEVTKRYHLVGLPADTIHIKLTGSAGQSVGAFL 1445 (1760)
Q Consensus 1369 ~~~~~~~ld~~~~~~~~~~l~~~---~~~~~~~~i~n~dR~vG~~Ls~~i~~~~g~~gl~~~~i~i~~~G~aGq~~Gaf~ 1445 (1760)
|..+...|..++.+. .-++| .++.|.+.-.-.++ +|+.+ +.| ++|+++|+|++++|..|
T Consensus 1245 dR~vGt~ls~~i~~~---yg~~gl~~~~i~i~~~G~aGqs-~Gaf~-------------~~G-~~i~v~GdAndyvGkgm 1306 (1485)
T PRK11750 1245 DRSVGARLSGEIARR---HGNQGMADAPIKLRFTGTAGQS-FGVWN-------------AGG-LELYLEGDANDYVGKGM 1306 (1485)
T ss_pred cccHHHHHHHHHHHH---hCcCCCCCCeEEEEEEccCccc-ccccc-------------CCC-CEEEEEecccccccccc
Confidence 334445555544333 22333 24555555333444 57763 333 56788999999999999
Q ss_pred CCCcEEEEEecCCc------------hhhcCCCCceEEEeCCCCCCCCCCccccchhhhhccCcccEEEEeccccccccc
Q 000266 1446 CPGILLELEGDSND------------YVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCV 1513 (1760)
Q Consensus 1446 ~~G~~i~v~G~A~D------------yvGkgmsGG~IvV~g~~~~~~~~~~~~i~Gn~~~yGatgG~i~v~G~aGeR~gv 1513 (1760)
+|++|+|.|+++. .++.||+||+|.|+|++|.+ ++--|+||.+.|.| +|+++|.
T Consensus 1307 -sGG~I~V~g~~~~~~~~~~~~i~Gn~~~yGatgG~i~i~G~AG~R------------~gvr~sG~~~VVeG-~Gd~~~E 1372 (1485)
T PRK11750 1307 -AGGKIVIRPPVGSAFRSHETAIIGNTCLYGATGGKLFAAGRAGER------------FAVRNSGAIAVVEG-IGDHGCE 1372 (1485)
T ss_pred -cCCEEEEECCCccccccccccccccceeeccccCEEEEEcccccc------------eeecCCCCeEEEeC-CCcchhh
Confidence 8999999999963 56689999999999995544 44469999999999 8999999
Q ss_pred ccCCcEEEEcC-CCccccccccCcEEEEeCCCCC---cccCCCcc
Q 000266 1514 RNSGARAVVEG-VGDHGCEYMTGGTVVVLGKTGR---NFAAGMSG 1554 (1760)
Q Consensus 1514 r~sG~~iVV~G-~Gd~~~eyMtgG~ivVlG~~G~---~~gagM~g 1554 (1760)
+|.||+|||.| +|.+.|.-|+||+++|.|..|. +++..|..
T Consensus 1373 yMtgG~vvVlG~~G~~~gagM~gG~~yv~~~~~~~~~~~n~~~V~ 1417 (1485)
T PRK11750 1373 YMTGGIVCVLGKTGVNFGAGMTGGFAYVLDEDGDFVDRVNHELVE 1417 (1485)
T ss_pred hhcCCEEEEeCCCCcchhcCCCCCEEEEECCccchhhhcCHhHee
Confidence 99999999999 5999999999999999998876 35566664
|
|
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.1e-11 Score=140.57 Aligned_cols=149 Identities=23% Similarity=0.308 Sum_probs=115.5
Q ss_pred CCC-CHHHHHHHHHHHHHhCCCCceEEEEccc-cCHHHHHHHHHHcCCCEEEEecCCC-C---------------CCCCc
Q 000266 1133 DIY-SIEDLAQLIYDLKNANPGARISVKLVSE-AGVGVIASGVVKGHADHVLISGHDG-G---------------TGASR 1194 (1760)
Q Consensus 1133 Diy-SiedLaqlI~~Lk~~~p~~pV~VKlv~~-~Gvg~iA~~aakaGAD~IvIsG~~G-G---------------TGas~ 1194 (1760)
++- +.|.+.+++.++|+.. ++||.||+.++ ..+..+|..+.++|+|+|++.+.-. + +|+-+
T Consensus 141 ~l~~~~e~l~~l~~~vk~~~-~~Pv~vKl~P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLS 219 (310)
T COG0167 141 ALGQDPELLEKLLEAVKAAT-KVPVFVKLAPNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLS 219 (310)
T ss_pred hhccCHHHHHHHHHHHHhcc-cCceEEEeCCCHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcC
Confidence 444 6788999999999987 89999999874 4777889999999999999876422 1 22222
Q ss_pred cccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCC
Q 000266 1195 WTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCP 1274 (1760)
Q Consensus 1195 ~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP 1274 (1760)
...++ ..+|.-+++...+ +..++|||..|||.|+.|+++.+++||++||++|++++-
T Consensus 220 G~~ik------p~al~~v~~l~~~--~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~--------------- 276 (310)
T COG0167 220 GPPLK------PIALRVVAELYKR--LGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIYK--------------- 276 (310)
T ss_pred cccch------HHHHHHHHHHHHh--cCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeee---------------
Confidence 22222 2345555554443 345799999999999999999999999999999997761
Q ss_pred CcccccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCC
Q 000266 1275 VGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRS 1325 (1760)
Q Consensus 1275 ~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~ 1325 (1760)
.| .++..|.++|.++|...|+.|++|++|..
T Consensus 277 ------Gp--------------~i~~~I~~~l~~~l~~~g~~si~d~iG~~ 307 (310)
T COG0167 277 ------GP--------------GIVKEIIKGLARWLEEKGFESIQDIIGSA 307 (310)
T ss_pred ------Cc--------------hHHHHHHHHHHHHHHHcCCCCHHHHhchh
Confidence 12 25678899999999999999999999854
|
|
| >PLN02549 asparagine synthase (glutamine-hydrolyzing) | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-11 Score=155.67 Aligned_cols=131 Identities=23% Similarity=0.205 Sum_probs=99.1
Q ss_pred EEEEeecccCCCCCCCCCCCCce------eeeccccccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChH
Q 000266 324 MALIHSRFSTNTFPSWDRAQPMR------ILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDS 397 (1760)
Q Consensus 324 ~ai~H~RySTNT~psw~~AQPfr------~laHNGEInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDS 397 (1760)
++|+|.|.|+.+.. ..+|||. .++|||||+|+...++.+. . ..+.+.|||
T Consensus 44 ~~Lgh~RLsI~d~~--~g~QP~~~~~~~~~lv~NGEIyN~~eLr~~L~-------------------~---~~f~t~sD~ 99 (578)
T PLN02549 44 CYLAHERLAIMDPE--SGDQPLYNEDKTIVVTANGEIYNHKELREKLK-------------------L---HKFRTGSDC 99 (578)
T ss_pred eEEEEeeeeEeCCC--CCCCCcCcCCCCEEEEEEEEEEcHHHHHHHHH-------------------h---CCCCCCCHH
Confidence 58999999999863 5799995 3799999998887765432 1 235789999
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHHHHHHHHHHHhccCCCCCCcEEEecCC--ceEEEccCCCCCCC
Q 000266 398 GAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDG--RYLGATLDRNGLRP 475 (1760)
Q Consensus 398 e~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e~rafYey~s~lmepwdGPa~iv~tdG--~~igA~lDrnGLRP 475 (1760)
|+|.++++. .|. +. ++..+|.|++++.|. +.+.++|||.|+||
T Consensus 100 Evil~ly~~---~G~---~~-----------------------------~~~L~G~FAf~i~D~~~~~l~~aRD~~GikP 144 (578)
T PLN02549 100 EVIAHLYEE---HGE---EF-----------------------------VDMLDGMFSFVLLDTRDNSFIAARDHIGITP 144 (578)
T ss_pred HHHHHHHHH---HHH---HH-----------------------------HHhCCCceEEEEEECCCCEEEEEECCCCCCC
Confidence 999887642 231 22 233599998888663 45666899999999
Q ss_pred ceEEEEe-CCEEEEEeccccccCCCCcEEEccccCCCcEEEEE
Q 000266 476 GRFYITH-SGRVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVD 517 (1760)
Q Consensus 476 lr~~~t~-d~~~i~ASE~galdi~~~~vv~kgrl~PGeml~vd 517 (1760)
| ||+.. ++.+++|||..+|.-...+|. +|.||.++.++
T Consensus 145 L-yyg~~~~g~~~fASE~KaL~~~~~~I~---~lpPGh~l~~~ 183 (578)
T PLN02549 145 L-YIGWGLDGSVWFASEMKALCDDCERFE---EFPPGHYYSSK 183 (578)
T ss_pred e-EEEEecCCeEEEEecHHHHHHHhCCEE---EeCCCeEEEEc
Confidence 9 88865 678999999999853345564 79999998875
|
|
| >PTZ00077 asparagine synthetase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.5e-11 Score=154.06 Aligned_cols=137 Identities=22% Similarity=0.179 Sum_probs=102.0
Q ss_pred cEEEEeecccCCCCCCCCCCCCce------eeeccccccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCCh
Q 000266 323 YMALIHSRFSTNTFPSWDRAQPMR------ILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSD 396 (1760)
Q Consensus 323 ~~ai~H~RySTNT~psw~~AQPfr------~laHNGEInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SD 396 (1760)
.++++|.|.|+..... ..|||. +++|||||+|+...++.+. ..+. .+.+.||
T Consensus 48 ~~~lgh~RLsIvd~~~--g~QP~~~~d~~~~lv~NGEIYN~~eLr~~L~-------------------~~g~-~f~t~sD 105 (586)
T PTZ00077 48 YNILAHERLAIVDLSD--GKQPLLDDDETVALMQNGEIYNHWEIRPELE-------------------KEGY-KFSSNSD 105 (586)
T ss_pred cEEEEeccceecCCCC--CCCCcCCCCCCEEEEEEEEEcCHHHHHHHHH-------------------hcCC-cCCCCCH
Confidence 4799999999999764 799996 4799999998887765442 2222 2478999
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHHHHHHHHHHHhccCCCCCCcEEEecCC--ceEEEccCCCCCC
Q 000266 397 SGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDG--RYLGATLDRNGLR 474 (1760)
Q Consensus 397 Se~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e~rafYey~s~lmepwdGPa~iv~tdG--~~igA~lDrnGLR 474 (1760)
+|+|.++++ +.|. .+++ +..+|.|++++.|. +.+.++|||.|+|
T Consensus 106 ~Evil~ly~---~~G~--~~~l-----------------------------~~L~G~FAf~i~D~~~~~l~~aRD~~Gik 151 (586)
T PTZ00077 106 CEIIGHLYK---EYGP--KDFW-----------------------------NHLDGMFATVIYDMKTNTFFAARDHIGII 151 (586)
T ss_pred HHHHHHHHH---HhCH--HHHH-----------------------------HhcCCCEEEEEEECCCCEEEEEECCCCCc
Confidence 999987754 3342 1222 23499998888664 4556689999999
Q ss_pred CceEEEE-eCCEEEEEeccccccCCCCcEEEccccCCCcEEEEEcC
Q 000266 475 PGRFYIT-HSGRVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVDFE 519 (1760)
Q Consensus 475 Plr~~~t-~d~~~i~ASE~galdi~~~~vv~kgrl~PGeml~vd~~ 519 (1760)
|| ||+. .++.+++|||..+|.-...+|. +|.||..+.++.+
T Consensus 152 PL-yy~~~~~g~~~faSE~kaL~~~~~~I~---~lpPGh~l~~~~~ 193 (586)
T PTZ00077 152 PL-YIGYAKDGSIWFSSELKALHDQCVEVK---QFPPGHYYDQTKE 193 (586)
T ss_pred Ce-EEEEecCCeEEEEecHHHHHHhcCCEE---EeCCCcEEEecCC
Confidence 99 8886 4678999999998853334554 7999999988754
|
|
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.1e-11 Score=141.10 Aligned_cols=146 Identities=19% Similarity=0.185 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEcccc-CHHHHHHHHHHcCCCEEEEecCCCCCCCCccc---cccccCCCHH----HHH
Q 000266 1138 EDLAQLIYDLKNANPGARISVKLVSEA-GVGVIASGVVKGHADHVLISGHDGGTGASRWT---GIKNAGLPWE----LGL 1209 (1760)
Q Consensus 1138 edLaqlI~~Lk~~~p~~pV~VKlv~~~-Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~---si~~~GlP~~----~~L 1209 (1760)
+.+.+++.++++.. +.||+||+.+.. .+..++..+.++|||+|++.+...+. ...+. ....+|++.. .+|
T Consensus 149 ~~~~eiv~~v~~~~-~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~nt~~~~-~id~~~~~~~~~~glSG~~~~~~al 226 (325)
T cd04739 149 QRYLDILRAVKSAV-TIPVAVKLSPFFSALAHMAKQLDAAGADGLVLFNRFYQP-DIDLETLEVVPNLLLSSPAEIRLPL 226 (325)
T ss_pred HHHHHHHHHHHhcc-CCCEEEEcCCCccCHHHHHHHHHHcCCCeEEEEcCcCCC-CccccccceecCCCcCCccchhHHH
Confidence 45678899999876 799999998653 56678888999999999998873221 11110 0112222211 233
Q ss_pred HHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcC
Q 000266 1210 AETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFA 1289 (1760)
Q Consensus 1210 aev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~ 1289 (1760)
.-+.+... ..++||++.|||.|+.|+++++++||++|++||+++.-
T Consensus 227 ~~v~~v~~----~~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~------------------------------ 272 (325)
T cd04739 227 RWIAILSG----RVKASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRH------------------------------ 272 (325)
T ss_pred HHHHHHHc----ccCCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhc------------------------------
Confidence 33333221 12699999999999999999999999999999998861
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCC
Q 000266 1290 GEPEHVINFFFMLAEELREIMSQLGFRTITEMIGR 1324 (1760)
Q Consensus 1290 g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr 1324 (1760)
++. ++..|.+||..+|...|+++++|++|.
T Consensus 273 -gp~----~~~~i~~~L~~~l~~~g~~~i~e~~G~ 302 (325)
T cd04739 273 -GPD----YIGTLLAGLEAWMEEHGYESVQQLRGS 302 (325)
T ss_pred -Cch----HHHHHHHHHHHHHHHcCCCCHHHHhcc
Confidence 122 567899999999999999999999883
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.6e-10 Score=130.19 Aligned_cols=144 Identities=19% Similarity=0.205 Sum_probs=106.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEcccc-CHHHHHHHHHHcCCCEEEEecCCCCCC---------------CCccccc
Q 000266 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEA-GVGVIASGVVKGHADHVLISGHDGGTG---------------ASRWTGI 1198 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~~-Gvg~iA~~aakaGAD~IvIsG~~GGTG---------------as~~~si 1198 (1760)
.+++-+.++|..+|+.. +.||+||+.+.. .+..+|..+.++|+|+|++.+...|.. +.+...+
T Consensus 140 ~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~ 218 (301)
T PRK07259 140 TDPELAYEVVKAVKEVV-KVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAI 218 (301)
T ss_pred cCHHHHHHHHHHHHHhc-CCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCc
Confidence 35788899999999987 899999997542 445677889999999999866432211 1111111
Q ss_pred cccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCccc
Q 000266 1199 KNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIA 1278 (1760)
Q Consensus 1199 ~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~gia 1278 (1760)
... ....+.++.+. + ++||++.|||.|+.|+.++++.|||.|++||+++.
T Consensus 219 ~p~---~l~~v~~i~~~-----~--~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~-------------------- 268 (301)
T PRK07259 219 KPI---ALRMVYQVYQA-----V--DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFY-------------------- 268 (301)
T ss_pred ccc---cHHHHHHHHHh-----C--CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhc--------------------
Confidence 111 12233333332 2 58999999999999999999999999999999776
Q ss_pred ccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCC
Q 000266 1279 TQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRS 1325 (1760)
Q Consensus 1279 tqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~ 1325 (1760)
+|. ++..+.++++.+|...|+++++|++|..
T Consensus 269 --~P~--------------~~~~i~~~l~~~~~~~g~~~i~~~~g~~ 299 (301)
T PRK07259 269 --DPY--------------AFPKIIEGLEAYLDKYGIKSIEEIVGIA 299 (301)
T ss_pred --CcH--------------HHHHHHHHHHHHHHHcCCCCHHHHhCcc
Confidence 232 5678889999999999999999998843
|
|
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=99.18 E-value=2e-10 Score=138.80 Aligned_cols=155 Identities=18% Similarity=0.165 Sum_probs=111.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEcccc-CHHHHHHHHHHcCCCEEEEecCCC-CCCC-----Cccccc----cccCC
Q 000266 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEA-GVGVIASGVVKGHADHVLISGHDG-GTGA-----SRWTGI----KNAGL 1203 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~~-Gvg~iA~~aakaGAD~IvIsG~~G-GTGa-----s~~~si----~~~Gl 1203 (1760)
.+++-+.+++.++|+.. +.||+||+.+.. .+..+|..+.++|||+|++.+.-. +.+- .+...+ ..-|+
T Consensus 165 q~~e~~~~i~~~Vk~~~-~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGl 243 (385)
T PLN02495 165 QDCDLLEEVCGWINAKA-TVPVWAKMTPNITDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGY 243 (385)
T ss_pred cCHHHHHHHHHHHHHhh-cCceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCc
Confidence 35788889999999886 899999998764 677788999999999999866533 1111 010000 11112
Q ss_pred C--H--HHHHHHHHHHHHhCC--CCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcc
Q 000266 1204 P--W--ELGLAETHQTLVAND--LRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGI 1277 (1760)
Q Consensus 1204 P--~--~~~Laev~q~L~~~g--lr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~gi 1277 (1760)
. . ..+|..+++...... ...+++|++.|||.|++|+++.+++||+.|+++|++|+-
T Consensus 244 SG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~~------------------ 305 (385)
T PLN02495 244 SSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVCTGVMMH------------------ 305 (385)
T ss_pred cchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEeeeeeec------------------
Confidence 1 1 134444444333211 123599999999999999999999999999999997761
Q ss_pred cccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCC
Q 000266 1278 ATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRS 1325 (1760)
Q Consensus 1278 atqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~ 1325 (1760)
++ .++..|.+||..+|...|+++++|++|+.
T Consensus 306 -------------Gp----~vi~~i~~~L~~~m~~~G~~si~e~~G~~ 336 (385)
T PLN02495 306 -------------GY----PLVKNLCAELQDFMKKHNFSSIEDFRGAS 336 (385)
T ss_pred -------------Cc----HHHHHHHHHHHHHHHHcCCCCHHHHhCcC
Confidence 12 25677899999999999999999999965
|
|
| >TIGR02814 pfaD_fam PfaD family protein | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-10 Score=141.26 Aligned_cols=217 Identities=20% Similarity=0.216 Sum_probs=123.0
Q ss_pred cceEecCCCcccCcHHHHHHHHHHHHHcCCceeccCCCCCccccCcCCCCCCchhhhheeecccC-C-cCCChhhhc-Cc
Q 000266 1009 KRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRSAIKQVASG-R-FGVSSYYLT-NA 1085 (1760)
Q Consensus 1009 ~Pf~i~aMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGge~~e~~~~~~~g~~~~~~s~IkQvasg-r-FGVt~~~L~-~a 1085 (1760)
.|++.+||+.|.-++ .|+.|+.++|+++..|.|+.+++++. .....|++..++ + ||||...-. +.
T Consensus 19 yPiiqgpMa~GiSs~----eLVaAVs~AGgLG~lgag~l~~e~l~--------~~I~~ir~~~~~~p~fGVNL~~~~~~~ 86 (444)
T TIGR02814 19 YAYVAGAMANGIASA----ELVIAMGRAGILGFFGAGGLPLEEVE--------QAIHRIQQALPGGPAYGVNLIHSPSDP 86 (444)
T ss_pred CcEECccccCCCCCH----HHHHHHHhCCceeeeCCCCCCHHHHH--------HHHHHHHHhcCCCCceEEEecccCCCc
Confidence 499999998776566 59999999999999999999999874 234556665444 6 999864211 11
Q ss_pred ----hhHHHhhhccCCCCC-CCCCCCccchHHHHHHhC-----CCCcccccCC-CCCCCCCCHHHH--------HHHHHH
Q 000266 1086 ----DELQIKMAQGAKPGE-GGELPGHKVIGDIAVTRN-----STAGVGLISP-PPHHDIYSIEDL--------AQLIYD 1146 (1760)
Q Consensus 1086 ----~~iqIKiaQGAKpGe-GG~Lpg~KV~~~IA~~R~-----~~pG~~lisP-~~hhDiySiedL--------aqlI~~ 1146 (1760)
+.+++-+..|.+--+ .+.+. +++.+...|. ...|. ...+ .-.+.+.+++.. ...|+.
T Consensus 87 ~~e~~~v~l~l~~~V~~veasa~~~---~~p~~v~~r~~G~~~~~~g~-~~~~~~ViakVsr~~vAs~f~~p~p~~~v~~ 162 (444)
T TIGR02814 87 ALEWGLVDLLLRHGVRIVEASAFMQ---LTPALVRYRAKGLHRDADGR-VVIRNRLIAKVSRPEVAEAFMSPAPAHILQK 162 (444)
T ss_pred ccHHHHHHHHHHcCCCEEEeccccC---CCcchhhhhhcccccccccc-ccccceEEEecCCHHHHHHhcCCCcHHHHHH
Confidence 222332333332100 00000 0111101000 00000 0000 000011111111 123444
Q ss_pred HHHhCCCCceEEEEccccCHHHHHHHHHHcC-CCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHH---HHH-hCCC
Q 000266 1147 LKNANPGARISVKLVSEAGVGVIASGVVKGH-ADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQ---TLV-ANDL 1221 (1760)
Q Consensus 1147 Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaG-AD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q---~L~-~~gl 1221 (1760)
|++.. . + ...-|..+.+.| +|.|++. .++|+|... .|+...|+++.+ .+. ..+-
T Consensus 163 L~~~G-~----i-------t~eEA~~a~~~g~aD~Ivve-~EAGGHtg~--------~~~~~Llp~i~~lrd~v~~~~~y 221 (444)
T TIGR02814 163 LLAEG-R----I-------TREEAELARRVPVADDICVE-ADSGGHTDN--------RPLVVLLPAIIRLRDTLMRRYGY 221 (444)
T ss_pred HHHcC-C----C-------CHHHHHHHHhCCCCcEEEEe-ccCCCCCCC--------CcHHHHHHHHHHHHHHHhhcccC
Confidence 44331 0 0 012345577888 6999886 777777532 255566666643 331 1222
Q ss_pred CCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhcc
Q 000266 1222 RGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGC 1262 (1760)
Q Consensus 1222 r~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc 1262 (1760)
..+|||+++|||.||++|+.|++|||++|++||.|+.+..|
T Consensus 222 ~~~VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~flat~Es 262 (444)
T TIGR02814 222 RKPIRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQCTVEA 262 (444)
T ss_pred CCCceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHHhCccc
Confidence 34699999999999999999999999999999999987655
|
The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se. |
| >TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing) | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-10 Score=144.16 Aligned_cols=116 Identities=26% Similarity=0.294 Sum_probs=87.8
Q ss_pred ccEEEEeecccCCCCCCCCCCCCce------eeeccccccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCC
Q 000266 322 SYMALIHSRFSTNTFPSWDRAQPMR------ILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSS 395 (1760)
Q Consensus 322 s~~ai~H~RySTNT~psw~~AQPfr------~laHNGEInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~S 395 (1760)
+.++|+|.|.|+...+. ..|||. .++|||||+|+...++.+.. .+. .+.+.|
T Consensus 40 ~~~~lgh~rl~i~d~~~--~~qP~~~~~~~~~lv~nGeiyN~~eL~~~l~~-------------------~g~-~~~~~~ 97 (467)
T TIGR01536 40 GNAILGHRRLAIIDLSG--GAQPMSNEGKTYVIVFNGEIYNHEELREELEA-------------------KGY-TFQTDS 97 (467)
T ss_pred CCEEEEEEEeEEeCCCC--CCCeeECCCCCEEEEEeeEEcCHHHHHHHHHh-------------------cCC-ccCCCC
Confidence 46899999999998742 499995 36999999998877765532 222 246899
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHHHHHHHHHHHhccCCCCCCcEEEecCC--ceEEEccCCCCC
Q 000266 396 DSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDG--RYLGATLDRNGL 473 (1760)
Q Consensus 396 DSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e~rafYey~s~lmepwdGPa~iv~tdG--~~igA~lDrnGL 473 (1760)
|+|++.++++. .| .++ ++.++|.|++++-|. +.+.++|||.|.
T Consensus 98 D~e~il~~y~~---~g---~~~-----------------------------~~~l~G~fa~~i~D~~~~~l~laRD~~G~ 142 (467)
T TIGR01536 98 DTEVILHLYEE---WG---EEC-----------------------------VDRLDGMFAFALWDSKKGELFLARDRFGI 142 (467)
T ss_pred HHHHHHHHHHH---HH---HHH-----------------------------HHHcCCcEEEEEEECCCCEEEEEECCCCC
Confidence 99999777542 22 122 234599998887655 666668999999
Q ss_pred CCceEEEEeCCEEEEEeccccc
Q 000266 474 RPGRFYITHSGRVIMASEVGVV 495 (1760)
Q Consensus 474 RPlr~~~t~d~~~i~ASE~gal 495 (1760)
||+ ||...++.+++|||..+|
T Consensus 143 kPL-yy~~~~~~~~faSe~kaL 163 (467)
T TIGR01536 143 KPL-YYAYDGGQLYFASEIKAL 163 (467)
T ss_pred cCe-EEEEECCEEEEEecHHHH
Confidence 999 888888999999997765
|
This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff. |
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.9e-10 Score=132.53 Aligned_cols=150 Identities=19% Similarity=0.158 Sum_probs=108.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEcccc-CHHHHHHHHHHcCCCEEEEecCCCCCCC-----Ccccccc---ccCCC-
Q 000266 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEA-GVGVIASGVVKGHADHVLISGHDGGTGA-----SRWTGIK---NAGLP- 1204 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~~-Gvg~iA~~aakaGAD~IvIsG~~GGTGa-----s~~~si~---~~GlP- 1204 (1760)
.+++.+.++|.++|+.. +.||+||+.+.. ....+|..+.++|+|+|+|+++-.|..- .+..... ..|.+
T Consensus 140 ~~~~~~~eiv~~vr~~~-~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~ 218 (300)
T TIGR01037 140 QDPELSADVVKAVKDKT-DVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAI 218 (300)
T ss_pred cCHHHHHHHHHHHHHhc-CCCEEEECCCChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhh
Confidence 36788899999999886 789999996532 3455677899999999999865332100 0000000 01111
Q ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhh
Q 000266 1205 WELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVL 1284 (1760)
Q Consensus 1205 ~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~L 1284 (1760)
+...+..+.+.... + ++|||+.|||.|+.|+.+++..|||+|++||+++. +|
T Consensus 219 ~~~~l~~v~~i~~~--~--~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~----------------------~p-- 270 (300)
T TIGR01037 219 KPIALRMVYDVYKM--V--DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYY----------------------RG-- 270 (300)
T ss_pred hHHHHHHHHHHHhc--C--CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhc----------------------Cc--
Confidence 11233444443222 2 48999999999999999999999999999999776 22
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCC
Q 000266 1285 REKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRS 1325 (1760)
Q Consensus 1285 r~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~ 1325 (1760)
.++..+.++|.++|...|+++++|++|+.
T Consensus 271 ------------~~~~~i~~~l~~~~~~~g~~~~~e~~g~~ 299 (300)
T TIGR01037 271 ------------FAFKKIIEGLIAFLKAEGFTSIEELIGIA 299 (300)
T ss_pred ------------hHHHHHHHHHHHHHHHcCCCCHHHHhCcC
Confidence 35788999999999999999999999864
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.5e-10 Score=131.64 Aligned_cols=147 Identities=21% Similarity=0.272 Sum_probs=107.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEcccc-CHHHHHHHHHHcCCCEEEEecCCCCCCCC-----cccccc---ccCC--
Q 000266 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEA-GVGVIASGVVKGHADHVLISGHDGGTGAS-----RWTGIK---NAGL-- 1203 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~~-Gvg~iA~~aakaGAD~IvIsG~~GGTGas-----~~~si~---~~Gl-- 1203 (1760)
.+++.+.+++..+|+.. +.||+||+.+.. .+..+|..+.++|||+|++.+...|..-. +..... ..|.
T Consensus 137 ~~~~~~~eiv~~vr~~~-~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~ 215 (296)
T cd04740 137 TDPEAVAEIVKAVKKAT-DVPVIVKLTPNVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAI 215 (296)
T ss_pred CCHHHHHHHHHHHHhcc-CCCEEEEeCCCchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCccc
Confidence 46788899999999886 899999996542 34566788999999999997654332100 000000 0111
Q ss_pred -C-HHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccC
Q 000266 1204 -P-WELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQD 1281 (1760)
Q Consensus 1204 -P-~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqd 1281 (1760)
| ....+.++.+. + ++|||+.|||.|+.|+.+++++|||.|++||+++. +
T Consensus 216 ~~~~~~~i~~i~~~-----~--~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~----------------------~ 266 (296)
T cd04740 216 KPIALRMVYQVYKA-----V--EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFV----------------------D 266 (296)
T ss_pred chHHHHHHHHHHHh-----c--CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhc----------------------C
Confidence 1 11233333332 1 59999999999999999999999999999999776 2
Q ss_pred hhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCC
Q 000266 1282 PVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRS 1325 (1760)
Q Consensus 1282 p~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~ 1325 (1760)
|. ++..+.+++.++|...|+++++|++|+.
T Consensus 267 p~--------------~~~~i~~~l~~~~~~~g~~~~~~~~g~~ 296 (296)
T cd04740 267 PE--------------AFKEIIEGLEAYLDEEGIKSIEELVGLA 296 (296)
T ss_pred hH--------------HHHHHHHHHHHHHHHcCCCCHHHHhCcC
Confidence 22 5678899999999999999999998853
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK02506 dihydroorotate dehydrogenase 1A; Reviewed | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.3e-10 Score=132.36 Aligned_cols=146 Identities=24% Similarity=0.260 Sum_probs=105.9
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHH---HcCCCEEEEecC------------------CCCCCCCc
Q 000266 1136 SIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVV---KGHADHVLISGH------------------DGGTGASR 1194 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aa---kaGAD~IvIsG~------------------~GGTGas~ 1194 (1760)
+++.+.+++..+|+.. +.||+||+.+...+..+|..+. +.|+|+|+.-+. ..+.|+-+
T Consensus 141 d~~~~~~i~~~v~~~~-~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlS 219 (310)
T PRK02506 141 DFETTEQILEEVFTYF-TKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIG 219 (310)
T ss_pred CHHHHHHHHHHHHHhc-CCccEEecCCCCCHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCC
Confidence 4788999999999886 7899999998777767766554 445565533221 11112222
Q ss_pred cccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCC
Q 000266 1195 WTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCP 1274 (1760)
Q Consensus 1195 ~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP 1274 (1760)
...++ | .+|..+++.... +..+++||+.|||.|++|+++.+++||++|+++|+++.-
T Consensus 220 G~~i~----p--~al~~v~~~~~~--~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~~--------------- 276 (310)
T PRK02506 220 GDYIK----P--TALANVRAFYQR--LNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHKE--------------- 276 (310)
T ss_pred chhcc----H--HHHHHHHHHHHh--cCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHHh---------------
Confidence 22232 1 345555544433 234699999999999999999999999999999998861
Q ss_pred CcccccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCC
Q 000266 1275 VGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRS 1325 (1760)
Q Consensus 1275 ~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~ 1325 (1760)
+| .++..+.+||+++|...|+++++|++|+.
T Consensus 277 ------gp--------------~~~~~i~~~L~~~l~~~g~~si~e~~G~~ 307 (310)
T PRK02506 277 ------GP--------------AVFERLTKELKAIMAEKGYQSLEDFRGKL 307 (310)
T ss_pred ------Ch--------------HHHHHHHHHHHHHHHHhCCCCHHHHhChh
Confidence 11 25678999999999999999999999854
|
|
| >PRK09431 asnB asparagine synthetase B; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-10 Score=146.74 Aligned_cols=132 Identities=22% Similarity=0.252 Sum_probs=99.4
Q ss_pred EEEEeecccCCCCCCCCCCCCce------eeeccccccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChH
Q 000266 324 MALIHSRFSTNTFPSWDRAQPMR------ILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDS 397 (1760)
Q Consensus 324 ~ai~H~RySTNT~psw~~AQPfr------~laHNGEInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDS 397 (1760)
++|+|.|.|+...+ ...|||. ++++||||+|+...++.+. .. ..+.+.||+
T Consensus 44 ~~lgh~RLsIid~~--~g~QP~~~~~~~~~lv~NGEIyN~~eLr~~L~-------------------~~--~~f~t~sD~ 100 (554)
T PRK09431 44 AILGHERLSIVDVN--GGAQPLYNEDGTHVLAVNGEIYNHQELRAELG-------------------DK--YAFQTGSDC 100 (554)
T ss_pred eEEEEEEeeecCCC--CCCCCCCcCCCCEEEEEEEEEecHHHHHHHHh-------------------cc--CCcCCCCHH
Confidence 58999999999874 5799994 3699999998887766442 11 124789999
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHHHHHHHHHHHhccCCCCCCcEEEecCC--ceEEEccCCCCCCC
Q 000266 398 GAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDG--RYLGATLDRNGLRP 475 (1760)
Q Consensus 398 e~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e~rafYey~s~lmepwdGPa~iv~tdG--~~igA~lDrnGLRP 475 (1760)
|+|.++++. .| .+. ++..+|.|++++.|. +.+.++|||.|.||
T Consensus 101 Evil~ly~~---~G---~~~-----------------------------~~~L~G~FAf~i~D~~~~~l~laRD~~GikP 145 (554)
T PRK09431 101 EVILALYQE---KG---PDF-----------------------------LDDLDGMFAFALYDSEKDAYLIARDPIGIIP 145 (554)
T ss_pred HHHHHHHHH---HH---HHH-----------------------------HHhCCCceEEEEEECCCCEEEEEeCCCCCcc
Confidence 999877652 23 112 233599999888765 45566899999999
Q ss_pred ceEEEEeC-CEEEEEeccccccCCCCcEEEccccCCCcEEEEE
Q 000266 476 GRFYITHS-GRVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVD 517 (1760)
Q Consensus 476 lr~~~t~d-~~~i~ASE~galdi~~~~vv~kgrl~PGeml~vd 517 (1760)
| ||+..+ +.+++|||.-+|--....|. +|.||..+.++
T Consensus 146 L-yy~~~~~~~~~faSE~kaL~~~~~~I~---~lpPGh~l~~~ 184 (554)
T PRK09431 146 L-YYGYDEHGNLYFASEMKALVPVCKTIK---EFPPGHYYWSK 184 (554)
T ss_pred e-EEEEeCCCeEEEecchHHHHHhcCCEE---EECCCeEEEEC
Confidence 9 888776 89999999998853445564 79999988765
|
|
| >cd03766 Gn_AT_II_novel Gn_AT_II_novel | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-10 Score=127.04 Aligned_cols=111 Identities=19% Similarity=0.214 Sum_probs=81.0
Q ss_pred cEEEEeecccCCCCCCCCCCCCce------eeeccccccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCCh
Q 000266 323 YMALIHSRFSTNTFPSWDRAQPMR------ILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSD 396 (1760)
Q Consensus 323 ~~ai~H~RySTNT~psw~~AQPfr------~laHNGEInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SD 396 (1760)
.+.++|+|.+-...+ ..+|||. .++|||||+|+...+ .+.||
T Consensus 47 ~~~l~~~rL~i~~~~--~~~QP~~~~~~~~~lv~NGeIyN~~~l~------------------------------~s~sD 94 (181)
T cd03766 47 TLLFTSSVLSLRGDH--VTRQPLVDQSTGNVLQWNGELYNIDGVE------------------------------DEEND 94 (181)
T ss_pred EEEEEeeEEEecCCC--CCCCCCEeCCCCEEEEECCEEECccccc------------------------------CCCCH
Confidence 478999999998853 5699995 369999999754221 15899
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHHHHHHHHHHHhccCCCCCCcEEEecCC--ceEEEccCCCCCC
Q 000266 397 SGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDG--RYLGATLDRNGLR 474 (1760)
Q Consensus 397 Se~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e~rafYey~s~lmepwdGPa~iv~tdG--~~igA~lDrnGLR 474 (1760)
||++.++++. .+.. .+++.. +++..+|+|++++.|. +.+.++|||.|.|
T Consensus 95 tEvi~~l~~~---~g~~-~~~i~~-------------------------~~~~L~G~fA~vi~d~~~~~l~~aRD~~G~r 145 (181)
T cd03766 95 TEVIFELLAN---CSSE-SQDILD-------------------------VLSSIEGPFAFIYYDASENKLYFGRDCLGRR 145 (181)
T ss_pred HHHHHHHHHH---Hhhh-HHHHHH-------------------------HHHhcccceEEEEEeCCCCEEEEEECCCCCc
Confidence 9999888653 2211 122221 1345699999888765 6677799999999
Q ss_pred CceEEEEe--CCEEEEEeccccc
Q 000266 475 PGRFYITH--SGRVIMASEVGVV 495 (1760)
Q Consensus 475 Plr~~~t~--d~~~i~ASE~gal 495 (1760)
|| ||... ++.+++||+.+..
T Consensus 146 PL-~y~~~~~~~~l~~aS~~~~~ 167 (181)
T cd03766 146 SL-LYKLDPNGFELSISSVSGSS 167 (181)
T ss_pred Cc-EEEeeCCCCcEEEEEccCCC
Confidence 99 77766 7889999997643
|
This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet |
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.12 E-value=6e-10 Score=138.43 Aligned_cols=182 Identities=20% Similarity=0.171 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHH
Q 000266 1138 EDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLV 1217 (1760)
Q Consensus 1138 edLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~ 1217 (1760)
+.+.++|.++|+.+|+.+|+.--+ .....|..+.++|||+|.|-=..|.-+.++. ....|.|...++.++.++..
T Consensus 253 ~~~~~~i~~ik~~~p~~~v~agnv---~t~~~a~~l~~aGad~v~vgig~gsictt~~--~~~~~~p~~~av~~~~~~~~ 327 (479)
T PRK07807 253 EKMLEALRAVRALDPGVPIVAGNV---VTAEGTRDLVEAGADIVKVGVGPGAMCTTRM--MTGVGRPQFSAVLECAAAAR 327 (479)
T ss_pred HHHHHHHHHHHHHCCCCeEEeecc---CCHHHHHHHHHcCCCEEEECccCCccccccc--ccCCchhHHHHHHHHHHHHH
Confidence 456788999999999999988654 3346678899999999988333333333332 34568899999999999865
Q ss_pred hCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhcccc---c----cccc---------------------
Q 000266 1218 ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIM---M----RKCH--------------------- 1269 (1760)
Q Consensus 1218 ~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~---~----r~ch--------------------- 1269 (1760)
.. .+|||++|||+++.|++||+++||++|++|+.|+-+..+.. . +.+-
T Consensus 328 ~~----~~~via~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~Espg~~~~~~~g~~~k~yrgmgs~~a~~~~~~~~~~~ 403 (479)
T PRK07807 328 EL----GAHVWADGGVRHPRDVALALAAGASNVMIGSWFAGTYESPGDLMRDRDGRPYKESFGMASARAVAARTAGDSAF 403 (479)
T ss_pred hc----CCcEEecCCCCCHHHHHHHHHcCCCeeeccHhhccCccCCCceEeccCCeEEEEeeccccHHHHhcccCccchh
Confidence 53 48999999999999999999999999999998875543211 0 0000
Q ss_pred ----cCCCCCcccccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCceeeccc
Q 000266 1270 ----KNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVDK 1332 (1760)
Q Consensus 1270 ----~~~cP~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~dLl~~~~ 1332 (1760)
...-|-||..+-|.+ ..+ .-.|..++..+...||..|..+|.++|.||..+..+++.+.
T Consensus 404 ~~~~~~~~~eGv~~~~~~~-~~~---~g~~~~~~~~l~~glr~~~~y~g~~~i~~~~~~~~~~~~t~ 466 (479)
T PRK07807 404 DRARKALFEEGISTSRMYL-DPG---RPGVEDLLDHITSGVRSSCTYAGARTLAEFHERAVVGVQSA 466 (479)
T ss_pred hhcccCCCCCCccceeeec-cCC---CCCHHHHHHHHHHHHHHHHhhcCcCcHHHHHhCCEEEEECc
Confidence 000111111111100 000 11277888999999999999999999999988888887753
|
|
| >TIGR03104 trio_amidotrans asparagine synthase family amidotransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=3e-10 Score=144.83 Aligned_cols=117 Identities=23% Similarity=0.244 Sum_probs=87.0
Q ss_pred ccEEEEeecccCCCCCCCCCCCCce------eeeccccccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCC
Q 000266 322 SYMALIHSRFSTNTFPSWDRAQPMR------ILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSS 395 (1760)
Q Consensus 322 s~~ai~H~RySTNT~psw~~AQPfr------~laHNGEInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~S 395 (1760)
+.++|+|+|+|+.... -...|||. .++|||||+|+...++.+. ..+. .+.+.|
T Consensus 41 ~~~~lgh~rl~i~~~~-~~~~QP~~~~~~~~~~v~nGeiyN~~eL~~~l~-------------------~~g~-~f~~~s 99 (589)
T TIGR03104 41 GPVALGHRRLKIIDLS-EASQQPMVDAELGLALVFNGCIYNYRELRAELE-------------------ALGY-RFFSDG 99 (589)
T ss_pred CCEEEEEEeeEecCCC-cCCCCCeECCCCCEEEEECCEecCHHHHHHHHH-------------------hcCC-cccCCC
Confidence 4589999999998753 36799995 3799999998877766443 2232 246899
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHHHHHHHHHHHhccCCCCCCcEEEecCCc--eEEEccCCCCC
Q 000266 396 DSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDGR--YLGATLDRNGL 473 (1760)
Q Consensus 396 DSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e~rafYey~s~lmepwdGPa~iv~tdG~--~igA~lDrnGL 473 (1760)
|+|++.++++. .| .++ ++..+|.|++++-|.+ .+.++|||.|.
T Consensus 100 D~Evil~~y~~---~G---~~~-----------------------------~~~l~G~fa~~i~d~~~~~l~laRD~~G~ 144 (589)
T TIGR03104 100 DTEVILKAYHA---WG---RDC-----------------------------VSRFNGMFAFAIWERDSGRLLLARDRLGI 144 (589)
T ss_pred HHHHHHHHHHH---HH---HHH-----------------------------HHHhhcceEEEEEeCCCCEEEEEecCCCC
Confidence 99999777542 22 111 2335999988775553 56668999999
Q ss_pred CCceEEEEeCCEEEEEeccccc
Q 000266 474 RPGRFYITHSGRVIMASEVGVV 495 (1760)
Q Consensus 474 RPlr~~~t~d~~~i~ASE~gal 495 (1760)
||| ||...++.+++|||..+|
T Consensus 145 kPL-yy~~~~~~~~faSe~kaL 165 (589)
T TIGR03104 145 KPL-YYAEDAGRLRFASSLPAL 165 (589)
T ss_pred CCe-EEEEeCCEEEEEeCHHHH
Confidence 999 888888899999997665
|
Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases. |
| >TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1 | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.7e-10 Score=142.16 Aligned_cols=139 Identities=27% Similarity=0.330 Sum_probs=98.7
Q ss_pred ccEEEEeecccCCCCCCCCCCCCcee------eeccccccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCC
Q 000266 322 SYMALIHSRFSTNTFPSWDRAQPMRI------LGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSS 395 (1760)
Q Consensus 322 s~~ai~H~RySTNT~psw~~AQPfr~------laHNGEInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~S 395 (1760)
+.++|+|.|+|+... . ..+||+.. ++|||||+|+...++-+ +..+. .+.+.|
T Consensus 42 ~~~~lgh~rl~i~d~-~-~~~qP~~~~~~~~~lv~nGei~N~~eL~~~l-------------------~~~g~-~~~~~s 99 (628)
T TIGR03108 42 PGIGLGHRRLSIIDL-S-GGQQPLFNEDGSVVVVFNGEIYNFQELVAEL-------------------QALGH-VFRTRS 99 (628)
T ss_pred CCEEEEEEeeeecCC-C-CCCCCcCcCCCCEEEEECCeECCHHHHHHHH-------------------HhcCC-ccCCCC
Confidence 358999999999875 3 68999853 69999999887776543 33333 247899
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHHHHHHHHHHHhccCCCCCCcEEEecCC--ceEEEccCCCCC
Q 000266 396 DSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDG--RYLGATLDRNGL 473 (1760)
Q Consensus 396 DSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e~rafYey~s~lmepwdGPa~iv~tdG--~~igA~lDrnGL 473 (1760)
|||++.++++. .| .++ ++..+|.|++++.|. +.+.++|||.|.
T Consensus 100 D~Evi~~~~~~---~g---~~~-----------------------------~~~l~G~fa~~~~d~~~~~l~~~rD~~G~ 144 (628)
T TIGR03108 100 DTEVIVHAWEE---WG---EAC-----------------------------VERFRGMFAFALWDRNQETLFLARDRLGI 144 (628)
T ss_pred hHHHHHHHHHH---HH---HHH-----------------------------HHHcCCCEEEEEEECCCCEEEEEECCCCC
Confidence 99999877642 22 111 234599998887553 456668999999
Q ss_pred CCceEEEE-eCCEEEEEecccccc-CC----------------------C----CcEEEccccCCCcEEEEEcCCC
Q 000266 474 RPGRFYIT-HSGRVIMASEVGVVD-IP----------------------P----EDVLRKGRLNPGMMLLVDFEKR 521 (1760)
Q Consensus 474 RPlr~~~t-~d~~~i~ASE~gald-i~----------------------~----~~vv~kgrl~PGeml~vd~~~g 521 (1760)
||| ||.. .++.+++|||..++- .+ + ..| .+|.||..+.++..++
T Consensus 145 ~PL-yy~~~~~~~~~faSe~~al~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~gI---~~l~pG~~l~~~~~~~ 216 (628)
T TIGR03108 145 KPL-YYALLADGWFIFGSELKALTAHPSLPRELDPLAVEDYFAYGYVPDPRTIFKGV---KKLEPGHTLTLRRGAP 216 (628)
T ss_pred cce-EEEEeCCCEEEEEecHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCCCchhcCc---EEECCCeEEEEECCCc
Confidence 999 7775 467899999987662 11 0 123 2799999998886543
|
The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins. |
| >COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.7e-09 Score=136.48 Aligned_cols=138 Identities=22% Similarity=0.209 Sum_probs=103.7
Q ss_pred cEEEEeecccCCCCCCCCCCCCcee------eeccccccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCCh
Q 000266 323 YMALIHSRFSTNTFPSWDRAQPMRI------LGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSD 396 (1760)
Q Consensus 323 ~~ai~H~RySTNT~psw~~AQPfr~------laHNGEInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SD 396 (1760)
.++++|.|.|.-...+ ..||+.. +++||||+|+...++.+.. .+.. |.+.||
T Consensus 42 ~~~~gh~rL~i~d~~~--g~QP~~~~~~~~~l~~NGEIYN~~elr~~l~~-------------------~g~~-f~t~sD 99 (542)
T COG0367 42 NALLGHRRLSIVDLSG--GRQPMIKEGGKYAIVYNGEIYNVEELRKELRE-------------------AGYE-FRTYSD 99 (542)
T ss_pred CceeeeeEEEEecccc--CCCCcccCCCcEEEEECCEeeeHHHHHHHHHh-------------------cCce-eccccc
Confidence 5799999999999886 8999964 6999999988777765432 2333 578999
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHHHHHHHHHHHhccCCCCCCcEEEec--CCceEEEccCCCCCC
Q 000266 397 SGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFT--DGRYLGATLDRNGLR 474 (1760)
Q Consensus 397 Se~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e~rafYey~s~lmepwdGPa~iv~t--dG~~igA~lDrnGLR 474 (1760)
||+|.++++.. |. ++ .+.++|-++++.- +.+.+..+|||.|.|
T Consensus 100 tEvil~~y~~~---g~---~~-----------------------------~~~l~G~fAfai~d~~~~~l~laRD~~Gik 144 (542)
T COG0367 100 TEVILTLYEEW---GE---DC-----------------------------VEHLNGMFAFAIYDETRQKLFLARDPFGVK 144 (542)
T ss_pred hHHHHHHHHHH---HH---HH-----------------------------HHHhccceEEEEEECCCCEEEEEecCCCcc
Confidence 99998876532 21 12 2335899776653 344566689999999
Q ss_pred CceEEEEeCCEEEEEeccccccCC-----CCcEEEccccCCCcEEEEEcCCC
Q 000266 475 PGRFYITHSGRVIMASEVGVVDIP-----PEDVLRKGRLNPGMMLLVDFEKR 521 (1760)
Q Consensus 475 Plr~~~t~d~~~i~ASE~galdi~-----~~~vv~kgrl~PGeml~vd~~~g 521 (1760)
|| ||..+++.+++|||..++--. -.+|. +|.||..+.++..+.
T Consensus 145 PL-yy~~~~~~l~faSE~Kal~~~~~~~~~~~i~---~l~pg~~l~~~~~~~ 192 (542)
T COG0367 145 PL-YYTSKNENLAFASEIKALLAHPVVRFLRDIK---ELPPGHLLEFTDGGL 192 (542)
T ss_pred cc-EEEecCCceEEEechhhhhhCCcccccCCeE---EcCCCcEEEEcCCCc
Confidence 99 899888889999999998322 23443 799999999987664
|
|
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.6e-09 Score=127.23 Aligned_cols=153 Identities=20% Similarity=0.145 Sum_probs=108.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEcccc-CHHHHHHHHHHcCCCEEEEecCCCC-C--------CCCccc----cccc
Q 000266 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEA-GVGVIASGVVKGHADHVLISGHDGG-T--------GASRWT----GIKN 1200 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~~-Gvg~iA~~aakaGAD~IvIsG~~GG-T--------Gas~~~----si~~ 1200 (1760)
..++.+.+++..+|+.. +.||+||+.+.. .+..+|..+.++|||+|++.+.-.+ . +...+. .--.
T Consensus 151 ~~~~~~~~i~~~v~~~~-~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~ 229 (420)
T PRK08318 151 QVPELVEMYTRWVKRGS-RLPVIVKLTPNITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGY 229 (420)
T ss_pred CCHHHHHHHHHHHHhcc-CCcEEEEcCCCcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccc
Confidence 45788899999999875 799999998753 5677888899999999996544322 0 000000 0001
Q ss_pred cCCCH-HHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccc
Q 000266 1201 AGLPW-ELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIAT 1279 (1760)
Q Consensus 1201 ~GlP~-~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giat 1279 (1760)
.|.+. ..+|..+++.....+. .++|||+.|||.|++|+++.+..||++|++||++++-
T Consensus 230 SG~a~~p~~l~~v~~~~~~~~~-~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~-------------------- 288 (420)
T PRK08318 230 CGPAVKPIALNMVAEIARDPET-RGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQY-------------------- 288 (420)
T ss_pred cchhhhHHHHHHHHHHHhcccc-CCCCEEeecCcCCHHHHHHHHHhCCChheeeeeeccC--------------------
Confidence 13221 1234444443222111 2699999999999999999999999999999997761
Q ss_pred cChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCC
Q 000266 1280 QDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGR 1324 (1760)
Q Consensus 1280 qdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr 1324 (1760)
+ + .++..|..||+.+|...|+.++.|++|.
T Consensus 289 -g----------p----~ii~~I~~~L~~~l~~~g~~si~e~iG~ 318 (420)
T PRK08318 289 -G----------F----RIVEDMISGLSHYMDEKGFASLEDMVGL 318 (420)
T ss_pred -C----------c----hhHHHHHHHHHHHHHHcCcchHHHHhcc
Confidence 1 1 1467789999999999999999999885
|
|
| >PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.2e-10 Score=128.14 Aligned_cols=191 Identities=23% Similarity=0.261 Sum_probs=84.4
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCce--------eeeccccc
Q 000266 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMR--------ILGHNGEI 354 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr--------~laHNGEI 354 (1760)
++++|+..+++.. +||...-+.+=.. +. -|.+..++|.+.|.|+|.+|.+..+-.|+|||+ +.||||.|
T Consensus 34 DGwGiawy~~~~~~~~k~~~pa~~~~~-~~-~l~~~~i~S~~~laHvR~AT~G~v~~~N~HPF~~~~~g~~w~FaHNG~i 111 (271)
T PF13230_consen 34 DGWGIAWYDGGGPRVFKSPRPAWNSPN-LR-LLADYKIRSRLFLAHVRAATQGAVSLENCHPFSRELWGRRWLFAHNGTI 111 (271)
T ss_dssp --EEEEEESSSS-EEEEESS-CCC-HH-HH-HHHH-H-EEEEEEEEE------------SS-EE----ETTEEEEEEEEE
T ss_pred CeeEEEEEeCCeEEEEECCCCCcCCch-HH-HHhhCCccCCEEEEEecccCCCCCCcccCCCceeccCCCcEEEEeCCcc
Confidence 4589999888776 9998754332211 11 122224789999999999999999999999997 36999999
Q ss_pred cChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHH-HHHHHcCCCHHHHHHHcCccccccCCCCC
Q 000266 355 NTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVL-ELLVRAGRSLPEAVMMMIPEAWQNDKNMD 433 (1760)
Q Consensus 355 nt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~L-e~l~~~g~sl~eAi~~~iPeaw~~~~~m~ 433 (1760)
..+...+ ...+. ..+.||||.+-.+| ..|...+.+-+.++..+
T Consensus 112 ~~f~~~~----------------------~~~~~--~~G~TDSE~~F~lll~~l~~~~~~~~~~~~~~------------ 155 (271)
T PF13230_consen 112 PGFEDIL----------------------DDRYQ--PVGTTDSEHAFCLLLDQLRDRGPDAPPALEEL------------ 155 (271)
T ss_dssp TTGGGGH----------------------HHHHT----S--HHHHHHHHHHHTTTTT-HH--HHHHHH------------
T ss_pred ccccccC----------------------ccccc--cCCCcHHHHHHHHHHHHHHHhCCcccccHHHH------------
Confidence 8765333 01111 25899999885542 21111110001111111
Q ss_pred HHHHHHHHHHHhccCCCCCCcEEEecCCceEEEccCCC----CCC-Cc------------eE---EEEeCCEEEEEeccc
Q 000266 434 PQRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRN----GLR-PG------------RF---YITHSGRVIMASEVG 493 (1760)
Q Consensus 434 ~e~rafYey~s~lmepwdGPa~iv~tdG~~igA~lDrn----GLR-Pl------------r~---~~t~d~~~i~ASE~g 493 (1760)
.+..-++...+-+ .|++-++++||+.+.|.+++. -.+ |. .+ ....+..++||||-
T Consensus 156 --~~~l~~~~~~~~~--~~~~N~~lsDG~~l~a~~~~~l~~~~r~~p~~~~~l~~~~~~~~~~~~~~~~~~~~vVaSeP- 230 (271)
T PF13230_consen 156 --FEALRELAKEINE--YGSLNFLLSDGERLFAHRYTSLYYLTRRPPFGKARLFDEDYEVDFSEVTDPDDRAVVVASEP- 230 (271)
T ss_dssp --HHHHHHHHHS-SS--SEEEEEEEE-SS-EEEEEEESSS----------------------EEEEETTTTEEEEESS--
T ss_pred --HHHHHHHHHHhcc--CeeEEEEEECCceEEEEEcCCeeEEeccccccccccccchhhhhhhhccCCCCCEEEEEecc-
Confidence 1222333333221 356678999999999988832 011 11 00 11235688999995
Q ss_pred cccCCCCcEEEccccCCCcEEEEEcCCCEEe
Q 000266 494 VVDIPPEDVLRKGRLNPGMMLLVDFEKRIVV 524 (1760)
Q Consensus 494 aldi~~~~vv~kgrl~PGeml~vd~~~g~i~ 524 (1760)
+...+-|+ .|.||++++|+ .|+++
T Consensus 231 ---Lt~~e~W~--~vp~g~~l~~~--~G~v~ 254 (271)
T PF13230_consen 231 ---LTDDEDWE--PVPPGSLLVFR--DGEVV 254 (271)
T ss_dssp ------SS--E--E--SSEEEE---------
T ss_pred ---CCCCCCeE--EcCCCcEEEEe--ccccc
Confidence 33344554 79999999886 46655
|
|
| >COG0070 GltB Glutamate synthase domain 3 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.7e-09 Score=124.32 Aligned_cols=117 Identities=26% Similarity=0.397 Sum_probs=102.9
Q ss_pred EEEEEecCccchhhhcCCCCcEEEEEec------CC----chhhcCCCCceEEEeCCCCCCCCCCccccchhhhhccCcc
Q 000266 1429 IHIKLTGSAGQSVGAFLCPGILLELEGD------SN----DYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATS 1498 (1760)
Q Consensus 1429 i~i~~~G~aGq~~Gaf~~~G~~i~v~G~------A~----DyvGkgmsGG~IvV~g~~~~~~~~~~~~i~Gn~~~yGatg 1498 (1760)
++|+++|+|+.++|--| .|++|+|+|+ +| |.|+-|+.||+|.|+|++ |.-++-=|+|
T Consensus 103 ~~l~l~GdAnDyvGkgm-sgG~IVV~~~~~~~~~~~~i~Gn~~lyGatgG~~fi~G~A------------GeRfaVrnsG 169 (301)
T COG0070 103 PTLELNGDANDYVGKGM-SGGKIVVRGPARFKAEANIIVGNTVLYGATGGELFIRGNA------------GERFGVRNSG 169 (301)
T ss_pred CEEEEEeccCCcccCCC-CCcEEEEECCCcccccCCceecceEEEeccCcEEEEecCc------------eeeEEEEccC
Confidence 56888999999999999 7889999999 99 999999999999999995 5555667899
Q ss_pred cEEEEecccccccccccCCcEEEEcC-CCccccccccCcEEEEeCCCCCcccCCCcceEEEE
Q 000266 1499 GEAYFNGMAAERFCVRNSGARAVVEG-VGDHGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYV 1559 (1760)
Q Consensus 1499 G~i~v~G~aGeR~gvr~sG~~iVV~G-~Gd~~~eyMtgG~ivVlG~~G~~~gagM~gG~iyv 1559 (1760)
+.+.|.|. |+..|.-|.||.+||=| +|...|.-|+||.+-|+|..|..|-.+-.--++-+
T Consensus 170 ~~~VVeG~-GD~~cEYMtGG~VvVLG~~G~nfgaGMsGG~aYV~~~~~~~f~~~~n~~~ve~ 230 (301)
T COG0070 170 ATAVVEGI-GDHGCEYMTGGRVVVLGDTGRNFGAGMSGGVAYVRGEVGSDFPLGVNAELVEL 230 (301)
T ss_pred ceEEEecc-CcceecccCCCEEEEeCCcchhhcCcccceEEEEecCccchhhcCccceEEEe
Confidence 99999999 99999999999999988 58779999999999999999976666655555655
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.3e-10 Score=137.49 Aligned_cols=60 Identities=47% Similarity=0.877 Sum_probs=57.8
Q ss_pred CcccCccccccCCCCCCHHHHhcCchhhccCCCChhHHHHHHhhhcCCCCCcccCCCCCCC
Q 000266 1700 KHRGFIAYEREGVQYRDPNIRMNDWKEVMEESKPGPLLKTQSARCMDCGTPFCHQVCIAPF 1760 (1760)
Q Consensus 1700 k~~gF~~~~R~~~~~r~~~~R~~Df~Ev~~~l~~~~~a~~QAaRCMdCG~PfC~~~~gCPl 1760 (1760)
|+.||++|+|+.++++++++|++||+|++.++ +.++|+.||+||++|+.|+|+.+++||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~rc~~c~~~~C~~~~~CP~ 60 (485)
T TIGR01317 1 KPTGFLEYKRRKPTERDPRTRLKDWKEFTNPF-DKESAKYQAARCMDCGTPFCHNDSGCPL 60 (485)
T ss_pred CCCCcceecccCcCcCCHHHHhhCHHHHhCCC-CHHHHHHHHHhccCCCCCCCCCCCCCCC
Confidence 47899999999999999999999999999999 9999999999999999999999788996
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.6e-08 Score=121.57 Aligned_cols=145 Identities=18% Similarity=0.187 Sum_probs=99.1
Q ss_pred CCCCHHHHHHHHHHHHHhCC----CCceEEEEccccC---HHHHHHHHHHcCCCEEEEecCCCCCC-CCccc-cccc---
Q 000266 1133 DIYSIEDLAQLIYDLKNANP----GARISVKLVSEAG---VGVIASGVVKGHADHVLISGHDGGTG-ASRWT-GIKN--- 1200 (1760)
Q Consensus 1133 DiySiedLaqlI~~Lk~~~p----~~pV~VKlv~~~G---vg~iA~~aakaGAD~IvIsG~~GGTG-as~~~-si~~--- 1200 (1760)
+...++.+.+++..+|+... +.||+||+.+... +..+|..+.++|||+|+++|..-... ..... ....
T Consensus 187 ~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~ 266 (344)
T PRK05286 187 DLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGL 266 (344)
T ss_pred cccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCc
Confidence 34567888999999998864 3899999986543 56678889999999999988531000 00000 0000
Q ss_pred cCCCH-HHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccc
Q 000266 1201 AGLPW-ELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIAT 1279 (1760)
Q Consensus 1201 ~GlP~-~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giat 1279 (1760)
.|.|. ...|..+.+.... ++.+++|++.|||.|+.|+.+++..|||+|++||++++-
T Consensus 267 SG~~~~~~~l~~v~~l~~~--~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~-------------------- 324 (344)
T PRK05286 267 SGRPLFERSTEVIRRLYKE--LGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYE-------------------- 324 (344)
T ss_pred ccHHHHHHHHHHHHHHHHH--hCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHh--------------------
Confidence 11110 1223333332222 344699999999999999999999999999999998861
Q ss_pred cChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 000266 1280 QDPVLREKFAGEPEHVINFFFMLAEELREIMSQLG 1314 (1760)
Q Consensus 1280 qdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG 1314 (1760)
+|. ++..+.+||+++|...|
T Consensus 325 -gP~--------------~~~~i~~~L~~~l~~~g 344 (344)
T PRK05286 325 -GPG--------------LVKEIVRGLARLLRRDG 344 (344)
T ss_pred -Cch--------------HHHHHHHHHHHHHHhcC
Confidence 122 46778899999998765
|
|
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.9e-08 Score=116.07 Aligned_cols=118 Identities=18% Similarity=0.089 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEcccc-CHHHHHHHHHHcCCCEEEEecCCCCC-C-----CCccc-------cccc
Q 000266 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEA-GVGVIASGVVKGHADHVLISGHDGGT-G-----ASRWT-------GIKN 1200 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~~-Gvg~iA~~aakaGAD~IvIsG~~GGT-G-----as~~~-------si~~ 1200 (1760)
.+++.+.+++..+|+.. +.||+||+.+.. .+..+|..+.++|||+|++.++-.+. + ..+.. .--.
T Consensus 151 ~~~~~~~~iv~~v~~~~-~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~ 229 (299)
T cd02940 151 QDPELVEEICRWVREAV-KIPVIAKLTPNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGY 229 (299)
T ss_pred cCHHHHHHHHHHHHHhc-CCCeEEECCCCchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcc
Confidence 45788999999999876 799999997643 55678888999999999987654331 0 00000 0001
Q ss_pred cCCCH----HHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000266 1201 AGLPW----ELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1201 ~GlP~----~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
.|.+. ...+.++++.+ ..+++||++|||.|++|+++++++||++|++||+++.
T Consensus 230 sG~a~~p~~l~~v~~~~~~~-----~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~ 286 (299)
T cd02940 230 SGPAVKPIALRAVSQIARAP-----EPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMN 286 (299)
T ss_pred cCCCcchHHHHHHHHHHHhc-----CCCCcEEEECCCCCHHHHHHHHHcCCChheEceeecc
Confidence 12221 23444444442 2369999999999999999999999999999999776
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.8e-08 Score=111.01 Aligned_cols=124 Identities=19% Similarity=0.188 Sum_probs=85.6
Q ss_pred CCCce----eeeccccccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHH
Q 000266 342 AQPMR----ILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEA 417 (1760)
Q Consensus 342 AQPfr----~laHNGEInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eA 417 (1760)
.|+++ .++.||||+|+...+..+. ..+. .+.+.||+|++.++++ +.|. ++
T Consensus 44 ~~~~~~~~~~iv~NGEIYN~~eLr~~L~-------------------~~g~-~f~t~sDtEvll~~y~---~~G~---~~ 97 (199)
T cd01909 44 VQVARSETGTAYLIGELYNRDELRSLLG-------------------AGEG-RSAVLGDAELLLLLLT---RLGL---HA 97 (199)
T ss_pred eeEeeCCCEEEEEEEEEeCHHHHHHHHH-------------------hcCC-CcCCCCHHHHHHHHHH---HHhH---HH
Confidence 55553 4799999998877765442 2222 2478999999987754 3342 23
Q ss_pred HHHcCccccccCCCCCHHHHHHHHHHHhccCCCCCCcEEEecCC-ceEEEccCCCCCCCceEEEEeCCEEEEEecccccc
Q 000266 418 VMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDG-RYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVD 496 (1760)
Q Consensus 418 i~~~iPeaw~~~~~m~~e~rafYey~s~lmepwdGPa~iv~tdG-~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~gald 496 (1760)
+. ..+|-|++++-|. +.+.++|||.|.||| ||... +.+++|||.-+|-
T Consensus 98 l~-----------------------------~L~G~FAfai~D~~~~L~laRDr~GikPL-Yy~~~-~~l~FASEikaLl 146 (199)
T cd01909 98 FR-----------------------------LAEGDFCFFIEDGNGRLTLATDHAGSVPV-YLVQA-GEVWATTELKLLA 146 (199)
T ss_pred HH-----------------------------HcCEEEEEEEEcCCCEEEEEECCCCCcCe-EEEEC-CeEEEEeCHHHHh
Confidence 33 3499998887665 656668999999999 88776 8999999998882
Q ss_pred -CC-----------CC--cEEE-ccccCCCcEEEEEcCCCE
Q 000266 497 -IP-----------PE--DVLR-KGRLNPGMMLLVDFEKRI 522 (1760)
Q Consensus 497 -i~-----------~~--~vv~-kgrl~PGeml~vd~~~g~ 522 (1760)
.+ +. .+.+ =.+|.||.++.++.++++
T Consensus 147 a~~~~~~~~d~~~~~~~~T~~~gI~rL~PG~~l~~~~~g~~ 187 (199)
T cd01909 147 AHEGPKAFPFKSAGADTVSGLTGVQRVPPGTVNVLTFDGGS 187 (199)
T ss_pred hCcCCCcccCcccCCCCCChhcCceEECCCcEEEEeeCCcc
Confidence 10 11 1110 137999999999888553
|
Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate ( |
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.2e-08 Score=116.81 Aligned_cols=117 Identities=16% Similarity=0.185 Sum_probs=86.0
Q ss_pred CCCHHHHHHHHHHHHHhCC------CCceEEEEcccc---CHHHHHHHHHHcCCCEEEEecCCC------------CCCC
Q 000266 1134 IYSIEDLAQLIYDLKNANP------GARISVKLVSEA---GVGVIASGVVKGHADHVLISGHDG------------GTGA 1192 (1760)
Q Consensus 1134 iySiedLaqlI~~Lk~~~p------~~pV~VKlv~~~---Gvg~iA~~aakaGAD~IvIsG~~G------------GTGa 1192 (1760)
....+.+.+++..+|+... +.||+||+.+.. .+..+|..+.++|||+|++.+.-- +.|+
T Consensus 185 ~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GG 264 (335)
T TIGR01036 185 LQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGG 264 (335)
T ss_pred ccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCc
Confidence 4456888899999887642 389999998875 377888889999999999876421 2222
Q ss_pred CccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000266 1193 SRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1193 s~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
-+...++. .+|..+.+.... +..+++||+.|||.|+.|+++++++||++|++||++++
T Consensus 265 lSG~~i~p------~al~~v~~~~~~--~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~ 322 (335)
T TIGR01036 265 LSGKPLQD------KSTEIIRRLYAE--LQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIY 322 (335)
T ss_pred ccCHHHHH------HHHHHHHHHHHH--hCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHH
Confidence 22222221 344444444332 33479999999999999999999999999999999886
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.9e-07 Score=110.10 Aligned_cols=120 Identities=16% Similarity=0.091 Sum_probs=81.4
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEccccCHHH---HHHHHHHc--CCCEEEEecCCCCC------CCCccc--cccccC
Q 000266 1136 SIEDLAQLIYDLKNANPGARISVKLVSEAGVGV---IASGVVKG--HADHVLISGHDGGT------GASRWT--GIKNAG 1202 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~---iA~~aaka--GAD~IvIsG~~GGT------Gas~~~--si~~~G 1202 (1760)
+++.+.+++..+|+.. +.||+||+.+...... +|..+.++ |+|+|++.+.-+.. ...+.. ....-|
T Consensus 141 ~~~~~~~i~~~v~~~~-~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG 219 (294)
T cd04741 141 DFDATLEYLTAVKAAY-SIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGG 219 (294)
T ss_pred CHHHHHHHHHHHHHhc-CCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCC
Confidence 5788899999999886 7999999987654433 44445567 99999975443210 011100 011123
Q ss_pred CC----HHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000266 1203 LP----WELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1203 lP----~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
+. -..+|..+++.... +..++|||+.|||.|++|+++.+..||++|++||+++.
T Consensus 220 ~SG~~i~~~al~~v~~~~~~--~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~ 277 (294)
T cd04741 220 LAGAYLHPLALGNVRTFRRL--LPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGK 277 (294)
T ss_pred cCchhhHHHHHHHHHHHHHh--cCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhh
Confidence 32 12345445543322 23369999999999999999999999999999999875
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.3e-08 Score=120.75 Aligned_cols=127 Identities=17% Similarity=0.201 Sum_probs=95.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCCeE-EEEcccchhchhhhh---cccCCCCCccccEEEEee
Q 000266 254 KVDFENQMYILRRVSMAAIRESLNLEHGGAKDFYICSLSSRTV-VYKGQLKPIQMKDYY---YADLGNERFTSYMALIHS 329 (1760)
Q Consensus 254 ~~~fer~Ly~lRk~~e~~i~~~~~~~~~~~~~~yI~SlS~~ti-vyKG~g~~~qv~~~y---~~DL~~~~~~s~~ai~H~ 329 (1760)
..+.-..|+.=++++ +.+-+.. .+|.|...+.+++ .||+.|.+.-+.+.. .+|| ++.|.++++|.|+
T Consensus 16 R~eIid~Li~GLqRL----EYRGYDS----aGiaId~~~~~s~~~~k~~GkVkaL~e~i~~q~~~l-~~~f~sH~gIAHT 86 (670)
T KOG1268|consen 16 RGEIIDTLIDGLQRL----EYRGYDS----AGIAIDGDELESLLIYKQTGKVSSLKEEINNQNLNL-DEKFISHCGIAHT 86 (670)
T ss_pred HHHHHHHHHHHHHHh----hccCCCC----CceeecCCcccchhhhcccCceeehhHHHhhcCccc-ceeeeeeeeeeee
Confidence 345556678888888 5443322 3456655555665 999999988775432 1244 5679999999999
Q ss_pred cccCCCCCCCCCCCCce-------eeeccccccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHH
Q 000266 330 RFSTNTFPSWDRAQPMR-------ILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDG 402 (1760)
Q Consensus 330 RySTNT~psw~~AQPfr-------~laHNGEInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~ 402 (1760)
|++|-+-|+-.|.||+| ..+|||=|+||++.+..+..|. -. |++.+|||++..
T Consensus 87 RWATHGvPs~~NsHP~rSd~~n~FvVVHNGIITNyk~lK~~L~~kG-------------------~~-FESdTDTEciaK 146 (670)
T KOG1268|consen 87 RWATHGVPSEVNCHPHRSDPSNEFVVVHNGIITNFKELKALLEKKG-------------------YV-FESDTDTECIAK 146 (670)
T ss_pred ehhhcCCCCccCCCCCcCCCCCcEEEEEcCeeccHHHHHHHHHhcC-------------------ce-eecccchHHHHH
Confidence 99999999999999999 3699999999999988775433 22 467999999999
Q ss_pred HHHHHHH
Q 000266 403 VLELLVR 409 (1760)
Q Consensus 403 ~Le~l~~ 409 (1760)
+..++..
T Consensus 147 L~~~~~D 153 (670)
T KOG1268|consen 147 LYKHIYD 153 (670)
T ss_pred HHHHHHh
Confidence 8876655
|
|
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-07 Score=113.18 Aligned_cols=123 Identities=15% Similarity=0.155 Sum_probs=83.2
Q ss_pred CCCHHHHHHHHHHHHHhCC----CCceEEEEcccc---CHHHHHHHHHHcCCCEEEEecCCCCCCCCcccccc-----cc
Q 000266 1134 IYSIEDLAQLIYDLKNANP----GARISVKLVSEA---GVGVIASGVVKGHADHVLISGHDGGTGASRWTGIK-----NA 1201 (1760)
Q Consensus 1134 iySiedLaqlI~~Lk~~~p----~~pV~VKlv~~~---Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~-----~~ 1201 (1760)
...++.+.+++..+|+... +.||+||+.+.. .+..+|..+.++|||+|++.+.--+.-........ ..
T Consensus 179 ~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~s 258 (327)
T cd04738 179 LQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLS 258 (327)
T ss_pred ccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccC
Confidence 4567888999999998753 389999997654 35567788999999999998742110000000000 00
Q ss_pred CCCH-HHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000266 1202 GLPW-ELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1202 GlP~-~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
|.+. ..++..+.+.... ++.+++|++.|||+|+.|+.++++.|||+|++||+++.
T Consensus 259 G~~~~~~~l~~v~~l~~~--~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~ 314 (327)
T cd04738 259 GAPLKERSTEVLRELYKL--TGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVY 314 (327)
T ss_pred ChhhhHHHHHHHHHHHHH--hCCCCcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHh
Confidence 1111 1233334333222 33469999999999999999999999999999999886
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway | Back alignment and domain information |
|---|
Probab=98.51 E-value=3e-07 Score=108.28 Aligned_cols=116 Identities=20% Similarity=0.222 Sum_probs=72.5
Q ss_pred CCCHHHH-HHHHHHHHHhCCCCceEEEEcccc-CHHH--HHHHHHHcCCCEEEEecCCC----------------CCCCC
Q 000266 1134 IYSIEDL-AQLIYDLKNANPGARISVKLVSEA-GVGV--IASGVVKGHADHVLISGHDG----------------GTGAS 1193 (1760)
Q Consensus 1134 iySiedL-aqlI~~Lk~~~p~~pV~VKlv~~~-Gvg~--iA~~aakaGAD~IvIsG~~G----------------GTGas 1193 (1760)
+...+++ ..++..+|... +.||+||+.+.. .+.. .+..+.+.|+|+|++.+.-. +.|+-
T Consensus 143 ~~~~~~~~~~i~~~v~~~~-~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGl 221 (295)
T PF01180_consen 143 FGQDPELVAEIVRAVREAV-DIPVFVKLSPNFTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGL 221 (295)
T ss_dssp GGGHHHHHHHHHHHHHHHH-SSEEEEEE-STSSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEE
T ss_pred cccCHHHHHHHHHHHHhcc-CCCEEEEecCCCCchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCc
Confidence 3334444 45666666664 899999998843 3333 34445688999998533211 11111
Q ss_pred ccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000266 1194 RWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1194 ~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
+...++ ..+|..+++.... +..+++||+.|||.|++|+++++++||++|+++|++++
T Consensus 222 SG~~i~------p~aL~~V~~~~~~--~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~ 278 (295)
T PF01180_consen 222 SGPAIR------PIALRWVRELRKA--LGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIY 278 (295)
T ss_dssp EEGGGH------HHHHHHHHHHHHH--TTTSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHH
T ss_pred Cchhhh------hHHHHHHHHHHhc--cccceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhh
Confidence 111111 2355555554443 33579999999999999999999999999999999876
|
DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A .... |
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.9e-07 Score=104.57 Aligned_cols=121 Identities=21% Similarity=0.138 Sum_probs=83.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEccccC---HHHHHHHHHHcCCCEEEEecCCCCCCCCc-----cccccccCCC--
Q 000266 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEAG---VGVIASGVVKGHADHVLISGHDGGTGASR-----WTGIKNAGLP-- 1204 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~~G---vg~iA~~aakaGAD~IvIsG~~GGTGas~-----~~si~~~GlP-- 1204 (1760)
.+++.+.+++..+|+.. +.||+||+.+... +..++..+.++|||+|++.|...+.-... .....+.|+.
T Consensus 145 ~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~ 223 (289)
T cd02810 145 QDPEAVANLLKAVKAAV-DIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGA 223 (289)
T ss_pred cCHHHHHHHHHHHHHcc-CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcH
Confidence 35678899999999876 8999999976543 34567778999999999987643321100 0001112221
Q ss_pred HH--HHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000266 1205 WE--LGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1205 ~~--~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
+. .++..+.+.... +..+++|++.|||.|+.|+.+++++|||+|++||+++.
T Consensus 224 ~~~~~~~~~v~~i~~~--~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~ 277 (289)
T cd02810 224 PIRPLALRWVARLAAR--LQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATALMW 277 (289)
T ss_pred HHHHHHHHHHHHHHHh--cCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHHHh
Confidence 11 123333332222 22369999999999999999999999999999999886
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.1e-07 Score=110.31 Aligned_cols=167 Identities=18% Similarity=0.165 Sum_probs=116.4
Q ss_pred HHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCC
Q 000266 1141 AQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVAND 1220 (1760)
Q Consensus 1141 aqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~g 1220 (1760)
.+.|+++|+.+|...|+---|.. ..-|+-+.++|||++.|.=..|.-+-+. -.-..|.|...++.++.+.....
T Consensus 280 iemik~iK~~yP~l~ViaGNVVT---~~qa~nLI~aGaDgLrVGMGsGSiCiTq--evma~GrpQ~TAVy~va~~A~q~- 353 (503)
T KOG2550|consen 280 LEMIKYIKETYPDLQIIAGNVVT---KEQAANLIAAGADGLRVGMGSGSICITQ--KVMACGRPQGTAVYKVAEFANQF- 353 (503)
T ss_pred HHHHHHHHhhCCCceeeccceee---HHHHHHHHHccCceeEeccccCceeeec--eeeeccCCcccchhhHHHHHHhc-
Confidence 35799999999999987664422 2455669999999999932222211111 12356889888999998876543
Q ss_pred CCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcCC----------
Q 000266 1221 LRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAG---------- 1290 (1760)
Q Consensus 1221 lr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g---------- 1290 (1760)
.||+|+||||++..+|+||+.|||+.|+||..+-.. -.+|-..--.|....++|.|
T Consensus 354 ---gvpviADGGiq~~Ghi~KAl~lGAstVMmG~lLAgt-----------TEapGeyf~~~g~rlKkyrGMGSl~AM~~~ 419 (503)
T KOG2550|consen 354 ---GVPCIADGGIQNVGHVVKALGLGASTVMMGGLLAGT-----------TEAPGEYFFRDGVRLKKYRGMGSLDAMESS 419 (503)
T ss_pred ---CCceeecCCcCccchhHhhhhcCchhheecceeeee-----------eccCcceeeecCeeehhccCcchHHHHhhh
Confidence 489999999999999999999999999999743221 13333222222221122211
Q ss_pred -----------------------CHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCce
Q 000266 1291 -----------------------EPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDM 1327 (1760)
Q Consensus 1291 -----------------------~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~dL 1327 (1760)
..-.|.+|+..+...++..+.-+|.+++++|..+.+-
T Consensus 420 s~~rY~~e~dkvkiAQGVsg~v~dKGsv~kfipyl~~giqh~cqdiGa~sL~~l~~~~~~ 479 (503)
T KOG2550|consen 420 SQKRYFSEVDKVKIAQGVSGSVQDKGSVQKFIPYLLAGIQHSCQDIGARSLKELREMMYS 479 (503)
T ss_pred hhhccccccceEeeccCcEEEeccCcchhhhHHHHHHHHhhhhhhhhHHHHHHHHHHhhc
Confidence 0245889999999999999999999999998554443
|
|
| >KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.6e-06 Score=100.37 Aligned_cols=147 Identities=21% Similarity=0.269 Sum_probs=102.6
Q ss_pred CHHHHHHHHHHHHHh-----CC-CCceEEEEccc---cCHHHHHHHHHHcCCCEEEEecC-------------CCCCCCC
Q 000266 1136 SIEDLAQLIYDLKNA-----NP-GARISVKLVSE---AGVGVIASGVVKGHADHVLISGH-------------DGGTGAS 1193 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~-----~p-~~pV~VKlv~~---~Gvg~iA~~aakaGAD~IvIsG~-------------~GGTGas 1193 (1760)
.-.||.+++...... .+ +.|+.||..+. ....++|..+.|.+.|.++++|. --+||+-
T Consensus 229 ~k~~L~~ll~~v~~a~~~~~~~~~~pvl~kiapDL~~~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGL 308 (398)
T KOG1436|consen 229 KKSDLRKLLTKVVQARDKLPLGKKPPVLVKIAPDLSEKELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGL 308 (398)
T ss_pred hHHHHHHHHHHHHHHHhccccCCCCceEEEeccchhHHHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCC
Confidence 335666655544332 12 33999999753 23446777788999999998764 1122222
Q ss_pred ccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCC
Q 000266 1194 RWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTC 1273 (1760)
Q Consensus 1194 ~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~c 1273 (1760)
+...++. .++..+++.... +|.+||||..|||.+|.|..+-+.+||..|+++|++-+-
T Consensus 309 sG~plk~------~st~~vR~mY~l--t~g~IpiIG~GGV~SG~DA~EkiraGASlvQlyTal~ye-------------- 366 (398)
T KOG1436|consen 309 SGPPLKP------ISTNTVRAMYTL--TRGKIPIIGCGGVSSGKDAYEKIRAGASLVQLYTALVYE-------------- 366 (398)
T ss_pred CCCccch------hHHHHHHHHHHh--ccCCCceEeecCccccHhHHHHHhcCchHHHHHHHHhhc--------------
Confidence 2222231 233444443332 578999999999999999999999999999999986651
Q ss_pred CCcccccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCC
Q 000266 1274 PVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRS 1325 (1760)
Q Consensus 1274 P~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~ 1325 (1760)
| ...+..|..||..+|...|+.+++|.||..
T Consensus 367 ----------------G-----p~i~~kIk~El~~ll~~kG~t~v~d~iG~~ 397 (398)
T KOG1436|consen 367 ----------------G-----PAIIEKIKRELSALLKAKGFTSVDDAIGKD 397 (398)
T ss_pred ----------------C-----chhHHHHHHHHHHHHHhcCCCcHHHhccCC
Confidence 1 124688999999999999999999999864
|
|
| >KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.6e-07 Score=108.77 Aligned_cols=135 Identities=24% Similarity=0.275 Sum_probs=95.4
Q ss_pred EEEeecccCCCCCCCCCCCCcee------eeccccccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHH
Q 000266 325 ALIHSRFSTNTFPSWDRAQPMRI------LGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSG 398 (1760)
Q Consensus 325 ai~H~RySTNT~psw~~AQPfr~------laHNGEInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe 398 (1760)
.++|.|-.--... ..+||.+. +.|||||+|-...+.-. +.|. +++.||.|
T Consensus 44 ~l~heRLAIvdp~--sg~QPi~~~~~~~~~~vNGEIYNH~~Lr~~~---------~~~~-------------~~T~sDcE 99 (543)
T KOG0571|consen 44 ILGHERLAIVDPT--SGAQPIVGEDGTYVVTVNGEIYNHKKLREHC---------KDFE-------------FQTGSDCE 99 (543)
T ss_pred cccccceeEecCC--cCCcccccCCCcEEEEECceeccHHHHHHHh---------hhcc-------------cccCCCce
Confidence 6677777766552 46999974 46999999655443321 1121 47889999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHHHHHHHHHHHhccCCCCCCcEEEecCCce--EEEccCCCCCCCc
Q 000266 399 AFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDGRY--LGATLDRNGLRPG 476 (1760)
Q Consensus 399 ~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e~rafYey~s~lmepwdGPa~iv~tdG~~--igA~lDrnGLRPl 476 (1760)
+|.++.+ ..| .++++.|+ ||=+++++.|.+. +.++||+.|++||
T Consensus 100 vIi~lY~---khg--~~~~~~~L-----------------------------DG~Fafvl~d~~~~kv~~aRDpiGv~~l 145 (543)
T KOG0571|consen 100 VIIHLYE---KHG--GEQAICML-----------------------------DGVFAFVLLDTKDDKVVAARDPIGVTPL 145 (543)
T ss_pred eeeehHh---hcC--chhHHHHh-----------------------------hhheEEEEecCCCCeEEeccCCcCceee
Confidence 9988754 333 57777765 8999888876544 7779999999999
Q ss_pred eEEEEe-CCEEEEEeccccccCCCCcEEEccccCCCcEEEEEcCCCEE
Q 000266 477 RFYITH-SGRVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVDFEKRIV 523 (1760)
Q Consensus 477 r~~~t~-d~~~i~ASE~galdi~~~~vv~kgrl~PGeml~vd~~~g~i 523 (1760)
|++.+ |+.+++|||.-++.-..+.|. -.-||-.. +.+.+++
T Consensus 146 -Y~g~~~~gs~~~aSe~k~l~d~C~~i~---~fpPgh~y--~~~~~~~ 187 (543)
T KOG0571|consen 146 -YYGWDSDGSVYFASEMKCLEDDCEKIE---SFPPGHYY--TSKTGKL 187 (543)
T ss_pred -EEEecCCCcEEEeeehhhhhhhhhcee---ecCCccee--ecccccc
Confidence 89876 578999999998865556664 46788754 4444443
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.4e-07 Score=121.89 Aligned_cols=52 Identities=19% Similarity=0.341 Sum_probs=49.5
Q ss_pred cccccCCCCCCHHHHhcCchhhccCCCChhHHHHHHhhhcCCC-CCcccCCCCCCC
Q 000266 1706 AYEREGVQYRDPNIRMNDWKEVMEESKPGPLLKTQSARCMDCG-TPFCHQVCIAPF 1760 (1760)
Q Consensus 1706 ~~~R~~~~~r~~~~R~~Df~Ev~~~l~~~~~a~~QAaRCMdCG-~PfC~~~~gCPl 1760 (1760)
..+|..++++++++|+++|+|++.+| +.++|+.||+|||+|| +|||++ +||+
T Consensus 173 ~~~r~~~~~~~~~~R~~~f~Ev~~~~-~~~~~~~ea~rC~~C~~~~~C~~--~CP~ 225 (639)
T PRK12809 173 VNSRKGADKISASERKTHFGEIYCGL-DPQQATYESDRCVYCAEKANCNW--HCPL 225 (639)
T ss_pred CccccCcccCCHHHHhcCHHHhhccC-CHHHHHHHHHHHhCCCCCCcccc--cCCC
Confidence 36899999999999999999999999 9999999999999998 899999 9996
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.5e-07 Score=125.82 Aligned_cols=52 Identities=15% Similarity=0.058 Sum_probs=44.3
Q ss_pred cccCCCCCCHHHHhcCchhhccC--------CCChhHH----HHHHhhhcCCCCCcccC----------CCCCCC
Q 000266 1708 EREGVQYRDPNIRMNDWKEVMEE--------SKPGPLL----KTQSARCMDCGTPFCHQ----------VCIAPF 1760 (1760)
Q Consensus 1708 ~R~~~~~r~~~~R~~Df~Ev~~~--------l~~~~~a----~~QAaRCMdCG~PfC~~----------~~gCPl 1760 (1760)
.-..+++|+|++|++||+|++.+ + +.+++ ..||+|||+||+||||+ ..|||+
T Consensus 143 ~~~~~~~~~~~~r~~~~~e~~~~~~~~~~~~~-~~~~~~~~~~~ea~RC~~C~~p~C~~~~~~~~~~~~~~~CP~ 216 (944)
T PRK12779 143 NFIPPYIRPAEERAVDFDLVNQGYLGYQSLGY-SVREVELFVWLEVMRDKQCDDKPCELGVLVQGKAEPKGGCPV 216 (944)
T ss_pred CCCCcccCCHHHHhhChHhhccccccccccCC-CHHHhhhhHHHHHHHhcCCCCCCCCCCcccccccCcCCCCcC
Confidence 34567899999999999999985 8 88884 49999999999999974 249996
|
|
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.9e-06 Score=98.58 Aligned_cols=105 Identities=15% Similarity=0.069 Sum_probs=79.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEcccc---CHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHH
Q 000266 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEA---GVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAE 1211 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~~---Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Lae 1211 (1760)
.+++-+.+++..++.. ++||+||+-+.. ....+|..+.++|||+|+|+....|++ .+....+.+
T Consensus 118 ~dp~~l~~iv~av~~~--~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~~~~g~~-----------~a~~~~I~~ 184 (231)
T TIGR00736 118 KNKELLKEFLTKMKEL--NKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDAMYPGKP-----------YADMDLLKI 184 (231)
T ss_pred CCHHHHHHHHHHHHcC--CCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEeeCCCCCc-----------hhhHHHHHH
Confidence 3567788999999954 789999997642 234678889999999999975332211 012345666
Q ss_pred HHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000266 1212 THQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1212 v~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
+.+.+ ..+|||+.|||.|..|+.+++..|||+|++||++|.
T Consensus 185 i~~~~------~~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~ 225 (231)
T TIGR00736 185 LSEEF------NDKIIIGNNSIDDIESAKEMLKAGADFVSVARAILK 225 (231)
T ss_pred HHHhc------CCCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhcc
Confidence 66542 139999999999999999999999999999998764
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=98.32 E-value=4e-07 Score=113.70 Aligned_cols=60 Identities=42% Similarity=0.715 Sum_probs=57.5
Q ss_pred ccCcccCccccccCCCCCCHHHHhcCchhhccCCCChhHHHHHHhhhcCCCCCcccCCCCCCC
Q 000266 1698 AVKHRGFIAYEREGVQYRDPNIRMNDWKEVMEESKPGPLLKTQSARCMDCGTPFCHQVCIAPF 1760 (1760)
Q Consensus 1698 ~~k~~gF~~~~R~~~~~r~~~~R~~Df~Ev~~~l~~~~~a~~QAaRCMdCG~PfC~~~~gCPl 1760 (1760)
|.|+.+|...+|..++.+++++|+++|+|++.++ +.++++.||+|||+|+.|||+. +||.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~~~~~~~a~rc~~c~~~~C~~--~CP~ 60 (471)
T PRK12810 1 MGKPTGFLEYDRVDPKKRPVAERIKDFKEFYEPF-SEEQAKIQAARCMDCGIPFCHW--GCPV 60 (471)
T ss_pred CCCCCccccccccCcccCCHHHHHhchHhhhccc-CHHHHHHHHHhccCCCCCcccc--cCCC
Confidence 5688999999999999999999999999999999 9999999999999999999999 8995
|
|
| >cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.2e-06 Score=95.78 Aligned_cols=112 Identities=14% Similarity=0.191 Sum_probs=77.0
Q ss_pred eeeccccccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcC-CCHHHHHHHcCccc
Q 000266 347 ILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAG-RSLPEAVMMMIPEA 425 (1760)
Q Consensus 347 ~laHNGEInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g-~sl~eAi~~~iPea 425 (1760)
+++.||||+|+...+..+ + ...+.||++++..+.+.+-..| +...+++..
T Consensus 74 ~~vfnGeIyN~~eLr~~l------------g------------~~~t~sD~evIl~lY~~~~d~G~y~~~~~l~~----- 124 (224)
T cd01910 74 FCLFQGHLDNLGSLKQQY------------G------------LSKTANEAMLVIEAYRTLRDRGPYPADQVVKD----- 124 (224)
T ss_pred EEEEEeEEcCHHHHHHHh------------C------------CCCCCcHHHHHHHHHHHHHhcCCccHHHHHHh-----
Confidence 468999999766544311 1 1256799999977765443334 233344443
Q ss_pred cccCCCCCHHHHHHHHHHHhccCCCCCCcEEEecCC--ceEEEccCCCCCCCceEEEEe-CCEEEEEeccccccCCC-Cc
Q 000266 426 WQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDG--RYLGATLDRNGLRPGRFYITH-SGRVIMASEVGVVDIPP-ED 501 (1760)
Q Consensus 426 w~~~~~m~~e~rafYey~s~lmepwdGPa~iv~tdG--~~igA~lDrnGLRPlr~~~t~-d~~~i~ASE~galdi~~-~~ 501 (1760)
++|-|++++-|. +.+.++|||.|.+|| ||+.. |+.+++|||.-+|.-.- ..
T Consensus 125 ------------------------L~G~FAFvi~D~~~~~l~lARD~~Gi~PL-Yyg~~~dG~l~FASElkaL~~~c~~~ 179 (224)
T cd01910 125 ------------------------LEGSFAFVLYDKKTSTVFVASDADGSVPL-YWGIAADGSVVFSDDVELVKASCGKS 179 (224)
T ss_pred ------------------------cCeEEEEEEEECCCCEEEEEEcCCCCcce-EEEEeCCCEEEEEeCHHHhhhhhccE
Confidence 499998887664 556668999999999 88854 88999999998885322 34
Q ss_pred EEEccccCCCcEEE
Q 000266 502 VLRKGRLNPGMMLL 515 (1760)
Q Consensus 502 vv~kgrl~PGeml~ 515 (1760)
+. ..-||-++.
T Consensus 180 ~~---~FPpG~~~~ 190 (224)
T cd01910 180 FA---PFPKGCFFH 190 (224)
T ss_pred EE---EECCCCEEe
Confidence 53 678898653
|
Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits. |
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.9e-07 Score=118.11 Aligned_cols=51 Identities=18% Similarity=0.384 Sum_probs=48.6
Q ss_pred ccccCCCCCCHHHHhcCchhhccCCCChhHHHHHHhhhcCCC-CCcccCCCCCCC
Q 000266 1707 YEREGVQYRDPNIRMNDWKEVMEESKPGPLLKTQSARCMDCG-TPFCHQVCIAPF 1760 (1760)
Q Consensus 1707 ~~R~~~~~r~~~~R~~Df~Ev~~~l~~~~~a~~QAaRCMdCG-~PfC~~~~gCPl 1760 (1760)
-+|+.++++++++|++||+|++.+| +.++|..||+|||+|+ .|||+. +||+
T Consensus 191 ~~r~~~~~~~~~~r~~~f~e~~~~~-~~~~a~~~~~rc~~C~~~~~C~~--~CP~ 242 (654)
T PRK12769 191 PPRGEPDKLAIEARKTGFDEIYLPF-RADQAQREASRCLKCGEHSICEW--TCPL 242 (654)
T ss_pred CcccCcCcCCHHHHhcCHHhhcCCC-CHHHHHHHHHhhhcCCCCCCccc--cCCC
Confidence 4789999999999999999999999 9999999999999998 799999 9996
|
|
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.27 E-value=6.1e-06 Score=94.63 Aligned_cols=98 Identities=19% Similarity=0.207 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEcccc--CHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHH
Q 000266 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEA--GVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAET 1212 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~~--Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev 1212 (1760)
.+++.+.+++..+|+. +.||+||+-... ....+|..+.++|+|+|.+++...|. . ..| ..+.++
T Consensus 123 ~~p~~l~eiv~avr~~--~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~~~~g~-~----------ad~-~~I~~i 188 (233)
T cd02911 123 KDPERLSEFIKALKET--GVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDAMDPGN-H----------ADL-KKIRDI 188 (233)
T ss_pred CCHHHHHHHHHHHHhc--CCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECcCCCCC-C----------CcH-HHHHHh
Confidence 3478889999999984 899999996543 34567788999999999886542221 1 112 233333
Q ss_pred HHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000266 1213 HQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1213 ~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
. .++|||+.|||.|..|+.+++..|||+|++||+
T Consensus 189 ~---------~~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 189 S---------TELFIIGNNSVTTIESAKEMFSYGADMVSVARA 222 (233)
T ss_pred c---------CCCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence 2 259999999999999999999999999999997
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=9.1e-07 Score=119.34 Aligned_cols=51 Identities=24% Similarity=0.355 Sum_probs=48.4
Q ss_pred ccccCCCCCCHHHHhcCchhhccCCCChhHHHHHHhhhcCCCCCcccCCCCCCC
Q 000266 1707 YEREGVQYRDPNIRMNDWKEVMEESKPGPLLKTQSARCMDCGTPFCHQVCIAPF 1760 (1760)
Q Consensus 1707 ~~R~~~~~r~~~~R~~Df~Ev~~~l~~~~~a~~QAaRCMdCG~PfC~~~~gCPl 1760 (1760)
..|.++++++|++|++||+||+.++ +.+++..||+|||+|+.|+|++ +||+
T Consensus 297 ~~~~~~~~~~~~er~~~f~ev~~~~-~~~~~~~ea~rC~~c~~~~C~~--~CP~ 347 (1006)
T PRK12775 297 PHQTPMPERDAVERARNFKEVNLGY-SLEDALQEAERCIQCAKPTCIA--GCPV 347 (1006)
T ss_pred cccCCCccCCHHHHhhCHHHHhccC-CHHHHHHHHHhccCCCCccccC--CCCC
Confidence 4677889999999999999999999 9999999999999999999999 9996
|
|
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.3e-06 Score=112.69 Aligned_cols=52 Identities=31% Similarity=0.500 Sum_probs=49.5
Q ss_pred cccccCCCCCCHHHHhcC-chhhccCCCChhHHHHHHhhhcCCCCCcccCCCCCCC
Q 000266 1706 AYEREGVQYRDPNIRMND-WKEVMEESKPGPLLKTQSARCMDCGTPFCHQVCIAPF 1760 (1760)
Q Consensus 1706 ~~~R~~~~~r~~~~R~~D-f~Ev~~~l~~~~~a~~QAaRCMdCG~PfC~~~~gCPl 1760 (1760)
+++|..++++++++|.+| |+|++.+| +.++|..||+|||+|+.|+|+. +||.
T Consensus 293 ~~~r~~~~~~~~~~r~~~~f~ev~~~~-~~~~a~~ea~rC~~c~~~~C~~--~Cp~ 345 (752)
T PRK12778 293 AIERVPMPELDPEYRAHNRFEEVNLGL-TKEQAMTEAKRCLDCKNPGCVE--GCPV 345 (752)
T ss_pred ccCcCCcccCCHHHHhcCChhhccCCC-CHHHHHHHHHHhhcCCCCcccc--cCcC
Confidence 478899999999999999 99999999 9999999999999999999999 8995
|
|
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.4e-05 Score=87.62 Aligned_cols=102 Identities=22% Similarity=0.230 Sum_probs=70.0
Q ss_pred HHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCC
Q 000266 1142 QLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDL 1221 (1760)
Q Consensus 1142 qlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~gl 1221 (1760)
+++.+++.. +.+++++..+ ...+..+.++|+|+|.+.+..-++...+ ...+....+.++.+..
T Consensus 93 ~~~~~~~~~--~i~~i~~v~~----~~~~~~~~~~gad~i~~~~~~~~G~~~~------~~~~~~~~i~~i~~~~----- 155 (236)
T cd04730 93 EVVERLKAA--GIKVIPTVTS----VEEARKAEAAGADALVAQGAEAGGHRGT------FDIGTFALVPEVRDAV----- 155 (236)
T ss_pred HHHHHHHHc--CCEEEEeCCC----HHHHHHHHHcCCCEEEEeCcCCCCCCCc------cccCHHHHHHHHHHHh-----
Confidence 345566653 5777777432 2445668889999999977522211111 0123344555555442
Q ss_pred CCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhcc
Q 000266 1222 RGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGC 1262 (1760)
Q Consensus 1222 r~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc 1262 (1760)
++||++.|||.++.|+.+++.+||++|.+|++++.+..|
T Consensus 156 --~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~e~ 194 (236)
T cd04730 156 --DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEES 194 (236)
T ss_pred --CCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhcCccc
Confidence 589999999999999999999999999999998876543
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=6.6e-05 Score=92.99 Aligned_cols=200 Identities=22% Similarity=0.320 Sum_probs=138.6
Q ss_pred hhhcccccCCCCCcccccceeeeeeeecCCCCCCCCCcCccceEEecCCccCHHHHHHHHh-cc-CCCCeeEEEEEEeeC
Q 000266 641 KQMFAQVTNPPIDPIREKIVTSMECMIGPEGVLTETTEEQCHRLSLKGPLLSIEEMEAIKR-MN-YRGWRSKVLDITYSK 718 (1760)
Q Consensus 641 kQ~FAQVTNPPID~iRE~~vmSl~~~~G~~~n~l~~~~~~~~~l~l~sPiL~~~~~~~l~~-~~-~~~~~~~~i~~~~~~ 718 (1760)
.|+=...-+|+|-++|=. . |--.+..|-|. +=|.+.++|+++.. +. ...|+- |..-+-.
T Consensus 252 G~Lpg~KV~~~IA~~R~~-------~--pG~~~ISP~pH--------HDiysieDLaqlI~dLk~~~~~~~--I~VKlva 312 (485)
T COG0069 252 GQLPGEKVTPEIAKTRGS-------P--PGVGLISPPPH--------HDIYSIEDLAQLIKDLKEANPWAK--ISVKLVA 312 (485)
T ss_pred CCCCCccCCHHHHHhcCC-------C--CCCCCcCCCCc--------ccccCHHHHHHHHHHHHhcCCCCe--EEEEEec
Confidence 467777888999888732 1 22233333332 23788888886432 22 123443 3333333
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHcCCcEEEEcCCC--------CCCCCccccHHHHHHHHHHHHHHcCCCCceeEEEeeC
Q 000266 719 DHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRA--------FSSKRVAVSSLLAVGAVHHHLVKNLERTRIGLIVESA 790 (1760)
Q Consensus 719 ~~g~~~l~~al~~l~~~a~~av~~G~~iliLsDr~--------~~~~~~~ip~lLav~avh~~Li~~~~R~~~~lvvesg 790 (1760)
..+. +..++ -.++.++.+|++|--. .+-+++-||-.++++-+||.|+.+|||.+|.|++ +|
T Consensus 313 ~~~v-~~iaa---------gvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~glRd~v~l~~-~G 381 (485)
T COG0069 313 EHGV-GTIAA---------GVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGLRDKVKLIA-DG 381 (485)
T ss_pred ccch-HHHHh---------hhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCCcceeEEEe-cC
Confidence 3232 22222 1578899999998652 3456789999999999999999999999999999 79
Q ss_pred CCCcHHHHHHHHhcCccccc----HHHHHHHHH-HHHHcCCCCC---CCCC---CCC---CHHHHHHHHHHHHHHHHHHH
Q 000266 791 EPREVHHFCTLVGFGADAIC----PYLATEAIW-RLQVDGKIPP---KASG---EFH---SKDELVKKYFKASNYGMMKV 856 (1760)
Q Consensus 791 e~re~Hh~a~L~GyGA~av~----Pyla~e~~~-~~~~~~~~~~---~~~~---~~~---~~~~~~~ny~~a~~~GllKv 856 (1760)
..|.--+++..+.+|||+++ |..|+-++. +.+..|..|+ |+++ +.+ ...+-+.||.+.+.+++-.+
T Consensus 382 gl~Tg~DVaka~aLGAd~v~~gTa~lia~GCim~r~CH~~tCp~GIaTqdp~Lrkrl~~~~~~~~v~N~~~~~a~e~rel 461 (485)
T COG0069 382 GLRTGADVAKAAALGADAVGFGTAALVALGCIMCRVCHTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFVAEELREL 461 (485)
T ss_pred CccCHHHHHHHHHhCcchhhhchHHHHHhhhHhhhhccCCCCCceeeecCHHHHhhcCccccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999996 555554442 3345666655 2221 111 23566789999999999999
Q ss_pred HHhhchhhhhcccc
Q 000266 857 LAKMGISTLASYKG 870 (1760)
Q Consensus 857 msKMGIstl~SY~g 870 (1760)
|+.+|+.+|....|
T Consensus 462 la~lG~~~l~el~g 475 (485)
T COG0069 462 LAALGKRSLSELIG 475 (485)
T ss_pred HHHhCCCCHHHHhc
Confidence 99999999998766
|
|
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=97.99 E-value=8.8e-05 Score=88.70 Aligned_cols=106 Identities=16% Similarity=0.119 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccc---c--CHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHH
Q 000266 1137 IEDLAQLIYDLKNANPGARISVKLVSE---A--GVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAE 1211 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~---~--Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Lae 1211 (1760)
++-+.+++..+|+.. +.||+||+-.. . ....++..+.++|+|.|+|.|.....+ ..|.+....+.+
T Consensus 116 ~~~~~ei~~~vr~~~-~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~--------~~~~~~~~~i~~ 186 (319)
T TIGR00737 116 PDLIGKIVKAVVDAV-DIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQG--------YSGEANWDIIAR 186 (319)
T ss_pred HHHHHHHHHHHHhhc-CCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEccccccc--------CCCchhHHHHHH
Confidence 456778888898876 68999998421 1 234567778999999999976422111 112233344555
Q ss_pred HHHHHHhCCCCCceEEEEcCCcCCHHHHHHHH-HcCCCccccchhHHH
Q 000266 1212 THQTLVANDLRGRTILQTDGQLKTGRDVAIAA-LLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1212 v~q~L~~~glr~rV~LiadGGIrtG~DVaKAl-aLGAdaVg~GTa~L~ 1258 (1760)
+.+. .++||++.|||.|+.|+.+++ ..|||+|++|++++.
T Consensus 187 i~~~-------~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~ 227 (319)
T TIGR00737 187 VKQA-------VRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALG 227 (319)
T ss_pred HHHc-------CCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhh
Confidence 5443 249999999999999999999 689999999999875
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00012 Score=87.75 Aligned_cols=107 Identities=12% Similarity=0.042 Sum_probs=78.5
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEcccc-----CHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHH
Q 000266 1136 SIEDLAQLIYDLKNANPGARISVKLVSEA-----GVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLA 1210 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p~~pV~VKlv~~~-----Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~La 1210 (1760)
.++-+.+++..+++.. +.||+||+-... ....+|..+.++|+|.|+|.|..... ...|.+....+.
T Consensus 117 ~p~~~~eiv~av~~a~-d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~--------~~~G~a~~~~i~ 187 (321)
T PRK10415 117 YPDLVKSILTEVVNAV-DVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRAC--------LFNGEAEYDSIR 187 (321)
T ss_pred CHHHHHHHHHHHHHhc-CCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCcccc--------ccCCCcChHHHH
Confidence 4667788899998876 789999994321 24456777899999999997643211 112322223455
Q ss_pred HHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHH-cCCCccccchhHHH
Q 000266 1211 ETHQTLVANDLRGRTILQTDGQLKTGRDVAIAAL-LGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1211 ev~q~L~~~glr~rV~LiadGGIrtG~DVaKAla-LGAdaVg~GTa~L~ 1258 (1760)
++.+. .++|||+.|||.|..|+.+++. .|||+|++||++|.
T Consensus 188 ~ik~~-------~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~ 229 (321)
T PRK10415 188 AVKQK-------VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQG 229 (321)
T ss_pred HHHHh-------cCCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhc
Confidence 55553 2599999999999999999997 69999999999875
|
|
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.88 E-value=7.4e-05 Score=84.55 Aligned_cols=107 Identities=15% Similarity=0.107 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEcccc----CHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHH
Q 000266 1136 SIEDLAQLIYDLKNANPGARISVKLVSEA----GVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAE 1211 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p~~pV~VKlv~~~----Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Lae 1211 (1760)
.++-+.++|..+++..+ .||+||+-... ....++..+.++|+|.|+|++.....+ ..+.+....+..
T Consensus 107 ~~~~~~eii~~v~~~~~-~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~--------~~~~~~~~~~~~ 177 (231)
T cd02801 107 DPELVAEIVRAVREAVP-IPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQR--------YSGPADWDYIAE 177 (231)
T ss_pred CHHHHHHHHHHHHHhcC-CCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHc--------CCCCCCHHHHHH
Confidence 34567788999988764 89999985322 233456678899999999976532110 111222233444
Q ss_pred HHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHc-CCCccccchhHHH
Q 000266 1212 THQTLVANDLRGRTILQTDGQLKTGRDVAIAALL-GAEEFGFSTAPLI 1258 (1760)
Q Consensus 1212 v~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaL-GAdaVg~GTa~L~ 1258 (1760)
+.+. .++||+++|||+|..|+.+++.. |||+|++||+++.
T Consensus 178 i~~~-------~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~ 218 (231)
T cd02801 178 IKEA-------VSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALG 218 (231)
T ss_pred HHhC-------CCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHh
Confidence 4432 36999999999999999999999 8999999998776
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >COG0121 Predicted glutamine amidotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00019 Score=83.39 Aligned_cols=72 Identities=19% Similarity=0.264 Sum_probs=55.3
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCcee--------eeccccc
Q 000266 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRI--------LGHNGEI 354 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr~--------laHNGEI 354 (1760)
+.++|+-++++.+ +||.-.-..+=..... .....+|...|.|+|.+|-+..+..|.|||.. .||||.|
T Consensus 34 DGwGia~y~~~~~~~yk~~~P~~~d~~~~~---~~~~i~S~~viaHvR~At~G~vs~~ntHPF~~~~~~~~~~FaHNG~l 110 (252)
T COG0121 34 DGWGIAFYEGRGPRLYKSPLPAWEDIALLV---LAYPIKSELVIAHVRKATQGEVSLSNTHPFTRELWGYIWLFAHNGQL 110 (252)
T ss_pred CcceEEEEcCCccEEEeCCCccccchhhhh---cccccCccEEEEEEeccCCCcccccCCCCccccCCccceEEEecCcc
Confidence 4689999999987 9998765432222211 13456888999999999999889999999963 5999999
Q ss_pred cChh
Q 000266 355 NTLR 358 (1760)
Q Consensus 355 nt~~ 358 (1760)
..++
T Consensus 111 ~~~~ 114 (252)
T COG0121 111 DKFK 114 (252)
T ss_pred cCcc
Confidence 8764
|
|
| >PF14691 Fer4_20: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; PDB: 2VDC_G 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.4e-06 Score=86.51 Aligned_cols=38 Identities=26% Similarity=0.607 Sum_probs=22.3
Q ss_pred HhcCchhhccCCCChhHHHHHHhhhcCCCCCcccCCCCCCC
Q 000266 1720 RMNDWKEVMEESKPGPLLKTQSARCMDCGTPFCHQVCIAPF 1760 (1760)
Q Consensus 1720 R~~Df~Ev~~~l~~~~~a~~QAaRCMdCG~PfC~~~~gCPl 1760 (1760)
|++||+||+..| +.+++..||+|||+|.+|+|+. +||+
T Consensus 1 r~~~f~e~~~~~-~~~~~~~ea~rC~~c~~~pC~~--aCP~ 38 (111)
T PF14691_consen 1 RIKNFKEVEKGY-SEEEAIEEASRCLQCEDPPCQA--ACPA 38 (111)
T ss_dssp ---------SS---HCCHHHHHHHS---TT-HHHH--TSTT
T ss_pred CCcCHHHHhcCc-CHHHHHHHHhhccCCCCCCccc--CCCC
Confidence 789999999999 9999999999999999999999 9996
|
|
| >PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots [] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00025 Score=86.22 Aligned_cols=123 Identities=27% Similarity=0.328 Sum_probs=83.1
Q ss_pred HHHcCCcEEEEcCCCC--------CCCCccccHHHHHHHHHHHHHHcCCCCceeEEEeeCCCCcHHHHHHHHhcCccccc
Q 000266 739 AIKEGYTLLVLSDRAF--------SSKRVAVSSLLAVGAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAIC 810 (1760)
Q Consensus 739 av~~G~~iliLsDr~~--------~~~~~~ip~lLav~avh~~Li~~~~R~~~~lvvesge~re~Hh~a~L~GyGA~av~ 810 (1760)
+++.|+.+|++|=..- ..+++-+|..+++.-+|+.|.++|+|.+|.||+ +|-.|.--|++..+-+|||+|+
T Consensus 223 ~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~Li~-sGgl~t~~dv~kalaLGAD~v~ 301 (368)
T PF01645_consen 223 AAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVSLIA-SGGLRTGDDVAKALALGADAVY 301 (368)
T ss_dssp HHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEEEE-ESS--SHHHHHHHHHCT-SEEE
T ss_pred hhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEEEE-eCCccCHHHHHHHHhcCCCeeE
Confidence 7789999999997742 236789999999999999999999999999999 8999999999999999999997
Q ss_pred ----HHHHHHHHHHH-HHcCCCCC---C-CCC--CCCC---HHHHHHHHHHHHHHHHHHHHHhhch
Q 000266 811 ----PYLATEAIWRL-QVDGKIPP---K-ASG--EFHS---KDELVKKYFKASNYGMMKVLAKMGI 862 (1760)
Q Consensus 811 ----Pyla~e~~~~~-~~~~~~~~---~-~~~--~~~~---~~~~~~ny~~a~~~GllKvmsKMGI 862 (1760)
+.+|+.++.-. +..+..|. + ++. ..++ ..+-+.||.+++...|..+|..||+
T Consensus 302 igt~~liAlGC~~~~~C~~~~CP~Giatq~~~l~~~l~~~~~~~~v~n~~~~~~~el~~~~~a~G~ 367 (368)
T PF01645_consen 302 IGTAALIALGCIQCRKCHTGTCPVGIATQDPKLRKRLDVEEKAERVANFLKACAEELREILAALGK 367 (368)
T ss_dssp -SHHHHHHCT--S---CCCT--TTSSS---CCHH--CT----HHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred ecchhhhhcchHHHhcccCCCCCceeeecCcccccccccccHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44444444221 12233322 1 111 0122 3566789999999999999999996
|
This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A. |
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0002 Score=77.04 Aligned_cols=102 Identities=23% Similarity=0.322 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCC-HHHHHHHHHHH
Q 000266 1137 IEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLP-WELGLAETHQT 1215 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP-~~~~Laev~q~ 1215 (1760)
++.+.+.+.++|+.+|+.+|++|+.+....... .+.+.|+|.|.+++..+++.... ..+ ....+..+.
T Consensus 98 ~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~--~~~~~g~d~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~-- 166 (200)
T cd04722 98 AREDLELIRELREAVPDVKVVVKLSPTGELAAA--AAEEAGVDEVGLGNGGGGGGGRD-------AVPIADLLLILAK-- 166 (200)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEECCCCccchh--hHHHcCCCEEEEcCCcCCCCCcc-------CchhHHHHHHHHH--
Confidence 566778889999887789999998654322211 16889999999988755432211 011 111222221
Q ss_pred HHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccch
Q 000266 1216 LVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFST 1254 (1760)
Q Consensus 1216 L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GT 1254 (1760)
. ..++||+++|||.++.++.+++.+|||+|++|+
T Consensus 167 --~---~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 167 --R---GSKVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred --h---cCCCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 1 136899999999999999999999999999986
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00023 Score=85.17 Aligned_cols=107 Identities=18% Similarity=0.191 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHHhCC-CCceEEEEcccc----CHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCC--HHHH
Q 000266 1136 SIEDLAQLIYDLKNANP-GARISVKLVSEA----GVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLP--WELG 1208 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p-~~pV~VKlv~~~----Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP--~~~~ 1208 (1760)
.++-+.+++..+|+..| +.||+||+-... ....+|..+.++|+|.|+|.|.....+ +.|.| | ..
T Consensus 115 ~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~--------y~g~~~~~-~~ 185 (312)
T PRK10550 115 DPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKEDG--------YRAEHINW-QA 185 (312)
T ss_pred CHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccC--------CCCCcccH-HH
Confidence 35667888999998875 689999985421 133567778999999999976432211 22322 3 34
Q ss_pred HHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHH-cCCCccccchhHHH
Q 000266 1209 LAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAAL-LGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1209 Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAla-LGAdaVg~GTa~L~ 1258 (1760)
+.++.+. + ++||++.|+|.|+.|+.+++. -|||+|++||++|.
T Consensus 186 i~~ik~~-----~--~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~ 229 (312)
T PRK10550 186 IGEIRQR-----L--TIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALN 229 (312)
T ss_pred HHHHHhh-----c--CCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHh
Confidence 5555554 2 599999999999999999985 68999999999776
|
|
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00024 Score=85.25 Aligned_cols=112 Identities=10% Similarity=0.088 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEcccc-------CHHHHHHHHHHcCCCEEEEecCCC-CCCCCccccccccCC-CH-
Q 000266 1136 SIEDLAQLIYDLKNANPGARISVKLVSEA-------GVGVIASGVVKGHADHVLISGHDG-GTGASRWTGIKNAGL-PW- 1205 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p~~pV~VKlv~~~-------Gvg~iA~~aakaGAD~IvIsG~~G-GTGas~~~si~~~Gl-P~- 1205 (1760)
.++-+.+++..+++.. +.||+||+-... ..-..+..+.++|+|+|+|.|... ..|-++. .+..+ |.
T Consensus 107 ~p~~~~~iv~av~~~~-~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~---~~~~~~~~~ 182 (318)
T TIGR00742 107 NADLVADCVKAMQEAV-NIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPK---ENREIPPLR 182 (318)
T ss_pred CHHHHHHHHHHHHHHh-CCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCcc---ccccCCchh
Confidence 4567788999999875 789999995321 112346678899999999987642 1111110 01111 21
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000266 1206 ELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1206 ~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
...+.++.+. + .+||||+-|||.|..|+.+++. |||+|++||++|.
T Consensus 183 ~~~i~~vk~~-----~-~~ipVi~NGdI~s~~da~~~l~-g~dgVMigRgal~ 228 (318)
T TIGR00742 183 YERVYQLKKD-----F-PHLTIEINGGIKNSEQIKQHLS-HVDGVMVGREAYE 228 (318)
T ss_pred HHHHHHHHHh-----C-CCCcEEEECCcCCHHHHHHHHh-CCCEEEECHHHHh
Confidence 1223333332 1 2599999999999999999986 9999999999886
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00028 Score=84.26 Aligned_cols=109 Identities=14% Similarity=0.100 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhC-CCCceEEEEcccc---------CHHHHHHHHHHcCCCEEEEecCCCCCCCCcccccc--ccCCC-HH
Q 000266 1140 LAQLIYDLKNAN-PGARISVKLVSEA---------GVGVIASGVVKGHADHVLISGHDGGTGASRWTGIK--NAGLP-WE 1206 (1760)
Q Consensus 1140 LaqlI~~Lk~~~-p~~pV~VKlv~~~---------Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~--~~GlP-~~ 1206 (1760)
+.+.|..+|+.. ++.||.||+.+.. ....++..+.++|+|+|.|++..... +..... ..+.+ ..
T Consensus 194 ~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~---~~~~~~~~~~~~~~~~ 270 (327)
T cd02803 194 LLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYES---PPPIIPPPYVPEGYFL 270 (327)
T ss_pred HHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcc---cccccCCCCCCcchhH
Confidence 467788888876 4679999997531 11235667889999999998753221 111000 01111 11
Q ss_pred HHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHc-CCCccccchhHHH
Q 000266 1207 LGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALL-GAEEFGFSTAPLI 1258 (1760)
Q Consensus 1207 ~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaL-GAdaVg~GTa~L~ 1258 (1760)
..+..+.+. + ++||++.|||.|..++.+++.. |||.|++||+++.
T Consensus 271 ~~~~~ir~~-----~--~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~la 316 (327)
T cd02803 271 ELAEKIKKA-----V--KIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLA 316 (327)
T ss_pred HHHHHHHHH-----C--CCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHh
Confidence 223333333 1 5899999999999999999999 7999999999886
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00015 Score=82.19 Aligned_cols=102 Identities=21% Similarity=0.131 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHH
Q 000266 1138 EDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLV 1217 (1760)
Q Consensus 1138 edLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~ 1217 (1760)
+.+.+++..+++. ++.++++-.. ...-+..+.++|+|+|.++.+ |-|+... ....+....+.++.+.+
T Consensus 105 ~~~~~~i~~~~~~-~~i~vi~~v~----t~ee~~~a~~~G~d~i~~~~~-g~t~~~~-----~~~~~~~~~i~~i~~~~- 172 (221)
T PRK01130 105 ETLAELVKRIKEY-PGQLLMADCS----TLEEGLAAQKLGFDFIGTTLS-GYTEETK-----KPEEPDFALLKELLKAV- 172 (221)
T ss_pred CCHHHHHHHHHhC-CCCeEEEeCC----CHHHHHHHHHcCCCEEEcCCc-eeecCCC-----CCCCcCHHHHHHHHHhC-
Confidence 3466778888875 5778776532 123456789999999977533 3332211 11223344555555542
Q ss_pred hCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHH
Q 000266 1218 ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1218 ~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L 1257 (1760)
++||++.|||+|+.|+.+++.+||++|.+|++++
T Consensus 173 ------~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~ 206 (221)
T PRK01130 173 ------GCPVIAEGRINTPEQAKKALELGAHAVVVGGAIT 206 (221)
T ss_pred ------CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhc
Confidence 5899999999999999999999999999999754
|
|
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00065 Score=81.73 Aligned_cols=110 Identities=18% Similarity=0.123 Sum_probs=81.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEccccC-----HHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHH
Q 000266 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEAG-----VGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGL 1209 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~~G-----vg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~L 1209 (1760)
.+++-+.++|..++++.+++||+||.=.... ...+|..+.++|++.|+|-|..-..+ +.|..-...+
T Consensus 118 ~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~--------y~~~ad~~~I 189 (323)
T COG0042 118 KNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRAQG--------YLGPADWDYI 189 (323)
T ss_pred CCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHHhc--------CCCccCHHHH
Confidence 4567789999999998767999999843321 23478889999999999987632211 1121222456
Q ss_pred HHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHc-CCCccccchhHHH
Q 000266 1210 AETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALL-GAEEFGFSTAPLI 1258 (1760)
Q Consensus 1210 aev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaL-GAdaVg~GTa~L~ 1258 (1760)
.++.+. +++ +|||+-|+|.|..|+...+.- |+|+|++|++++-
T Consensus 190 ~~vk~~-----~~~-ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~ 233 (323)
T COG0042 190 KELKEA-----VPS-IPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALG 233 (323)
T ss_pred HHHHHh-----CCC-CeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHcc
Confidence 666665 333 999999999999999999995 6999999998664
|
|
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00045 Score=83.36 Aligned_cols=114 Identities=12% Similarity=0.063 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEcccc-C------HHHHHHHHHHcCCCEEEEecCCCC-CCCCccccccccCCCHHH
Q 000266 1136 SIEDLAQLIYDLKNANPGARISVKLVSEA-G------VGVIASGVVKGHADHVLISGHDGG-TGASRWTGIKNAGLPWEL 1207 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p~~pV~VKlv~~~-G------vg~iA~~aakaGAD~IvIsG~~GG-TGas~~~si~~~GlP~~~ 1207 (1760)
.++-+.+++..+++.. +.||+||+-... + ...++..+.++|+|.|+|.|..+. .|-++ ..-...+.....
T Consensus 117 ~p~~~~eiv~avr~~v-~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~-~~~~~~~~~~~~ 194 (333)
T PRK11815 117 EPELVADCVKAMKDAV-SIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSP-KENREIPPLDYD 194 (333)
T ss_pred CHHHHHHHHHHHHHHc-CCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCc-cccccCCCcCHH
Confidence 3456788889998875 789999973211 1 124566788999999999865331 11110 000011111122
Q ss_pred HHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000266 1208 GLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1208 ~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
.+.++.+.. .++|||+.|||.|..|+.+++. |||+|++||+++.
T Consensus 195 ~i~~v~~~~------~~iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~ 238 (333)
T PRK11815 195 RVYRLKRDF------PHLTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYH 238 (333)
T ss_pred HHHHHHHhC------CCCeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHh
Confidence 334443321 2599999999999999999987 8999999999775
|
|
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00035 Score=79.24 Aligned_cols=102 Identities=20% Similarity=0.107 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHh
Q 000266 1139 DLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVA 1218 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~ 1218 (1760)
.+..++..+++.. +.++++...+ ...+..+.++|+|+|.+..+ |-|+... ....+....+.++.+.
T Consensus 110 ~~~~~i~~~~~~g-~~~iiv~v~t----~~ea~~a~~~G~d~i~~~~~-g~t~~~~-----~~~~~~~~~l~~i~~~--- 175 (219)
T cd04729 110 TLAELIKRIHEEY-NCLLMADIST----LEEALNAAKLGFDIIGTTLS-GYTEETA-----KTEDPDFELLKELRKA--- 175 (219)
T ss_pred CHHHHHHHHHHHh-CCeEEEECCC----HHHHHHHHHcCCCEEEccCc-ccccccc-----CCCCCCHHHHHHHHHh---
Confidence 4567788888775 6788776421 23457788999999976433 3232211 1122333455555543
Q ss_pred CCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000266 1219 NDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1219 ~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
+ ++||++.|||+++.|+.+++.+|||+|++|++++-
T Consensus 176 --~--~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~ 211 (219)
T cd04729 176 --L--GIPVIAEGRINSPEQAAKALELGADAVVVGSAITR 211 (219)
T ss_pred --c--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhC
Confidence 2 58999999999999999999999999999999664
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00035 Score=82.21 Aligned_cols=127 Identities=23% Similarity=0.314 Sum_probs=86.2
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEE-cCCcCCHHHHHHHHHcCCC
Q 000266 1170 ASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQT-DGQLKTGRDVAIAALLGAE 1248 (1760)
Q Consensus 1170 A~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~Lia-dGGIrtG~DVaKAlaLGAd 1248 (1760)
|..+++.|+.+|++|-...+ .+++.+|..+++.-+|+.|.+.|+|.++.||+ +|-+|+.-|++..+-+||+
T Consensus 148 a~~Av~~G~~ilILsDr~~~--------~~~~~IP~lLAv~avh~~Li~~glR~~~slIvesge~re~Hh~a~LlGyGA~ 219 (287)
T PF04898_consen 148 AEAAVREGANILILSDRNAS--------PDRAPIPSLLAVSAVHHHLIREGLRTRVSLIVESGEAREVHHFATLLGYGAD 219 (287)
T ss_dssp HHHHHHCT-SEEEEESTC-C--------TTEEE--HHHHHHHHHHHHHCTT-CCC-EEEEEESS--SHHHHHHHHCTT-S
T ss_pred HHHHHHcCCcEEEECCCCCC--------cCcccccHHHHHHHHHHHHHHcCCcceeeEEEecCCcccHHHHHHHHcCCHh
Confidence 45588899999999876533 24667899999999999999999999999888 7899999999999999999
Q ss_pred ccccchhHH-HHhccccccccccCCCCCcccccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcC
Q 000266 1249 EFGFSTAPL-ITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIG 1323 (1760)
Q Consensus 1249 aVg~GTa~L-~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELig 1323 (1760)
+|. +.| +..... .+..+..+ + ..-.+.+.||...+.+.|..+|+++|.++++--+|
T Consensus 220 AV~---PYla~e~~~~---~~~~~~~~------~-------~~~~~~~~ny~~a~~kGllKimSKMGIstl~SY~g 276 (287)
T PF04898_consen 220 AVN---PYLAYETIRE---LAERGELP------E-------LSPEEAIKNYRKALEKGLLKIMSKMGISTLQSYRG 276 (287)
T ss_dssp EEE---EHCCHHHHHH---CCCCCCCC------T---------HHHHHHHHHHHHHHHHHHHHHCTT--BHHHHCC
T ss_pred hhc---HHHHHHHHHH---HHhcCCCC------C-------CCHHHHHHHHHHHHHHHHHHHHHhcChHHhhhccc
Confidence 983 111 111001 11111111 0 01257899999999999999999999999987644
|
In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: |
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00023 Score=78.94 Aligned_cols=96 Identities=22% Similarity=0.149 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEE--EEecCCCCCCCCccccccccCCCHHHHHHHHHHH
Q 000266 1138 EDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHV--LISGHDGGTGASRWTGIKNAGLPWELGLAETHQT 1215 (1760)
Q Consensus 1138 edLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~I--vIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~ 1215 (1760)
+.|.++|..+|+.+ .++..= + ..-.-+..+.++|+|+| +++|+..-| + + -.|-...+.+..+.
T Consensus 79 ~~l~~li~~i~~~~--~l~MAD-i---st~ee~~~A~~~G~D~I~TTLsGYT~~t---~-----~-~~pD~~lv~~l~~~ 143 (192)
T PF04131_consen 79 ETLEELIREIKEKY--QLVMAD-I---STLEEAINAAELGFDIIGTTLSGYTPYT---K-----G-DGPDFELVRELVQA 143 (192)
T ss_dssp S-HHHHHHHHHHCT--SEEEEE-----SSHHHHHHHHHTT-SEEE-TTTTSSTTS---T-----T-SSHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHhC--cEEeee-c---CCHHHHHHHHHcCCCEEEcccccCCCCC---C-----C-CCCCHHHHHHHHhC
Confidence 45888999999875 333222 1 22244566999999999 456764433 2 2 33666666665442
Q ss_pred HHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhH
Q 000266 1216 LVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAP 1256 (1760)
Q Consensus 1216 L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~ 1256 (1760)
.++||+.|+|.|+.++.+|+.+||.+|-+|++.
T Consensus 144 --------~~pvIaEGri~tpe~a~~al~~GA~aVVVGsAI 176 (192)
T PF04131_consen 144 --------DVPVIAEGRIHTPEQAAKALELGAHAVVVGSAI 176 (192)
T ss_dssp --------TSEEEEESS--SHHHHHHHHHTT-SEEEE-HHH
T ss_pred --------CCcEeecCCCCCHHHHHHHHhcCCeEEEECccc
Confidence 589999999999999999999999999999974
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00055 Score=81.85 Aligned_cols=108 Identities=16% Similarity=0.113 Sum_probs=75.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEccccC-----HHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHH
Q 000266 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEAG-----VGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGL 1209 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~~G-----vg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~L 1209 (1760)
.+++-+.++|..+++.. +.||+||+-.... .-..+..+.++|++.|+|-|..... .+-|.+-...+
T Consensus 105 ~~p~~~~~iv~~~~~~~-~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q--------~~~~~a~w~~i 175 (309)
T PF01207_consen 105 KDPDLLAEIVKAVRKAV-PIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQ--------RYKGPADWEAI 175 (309)
T ss_dssp C-HHHHHHHHHHHHHH--SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTC--------CCTS---HHHH
T ss_pred cChHHhhHHHHhhhccc-ccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhh--------cCCcccchHHH
Confidence 35678899999999886 6999999954332 3346777999999999998763332 33344444566
Q ss_pred HHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHc-CCCccccchhHHH
Q 000266 1210 AETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALL-GAEEFGFSTAPLI 1258 (1760)
Q Consensus 1210 aev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaL-GAdaVg~GTa~L~ 1258 (1760)
+++.+.+ ++|||+-|+|.|..|+-+.+.. |+|+|++|+++|.
T Consensus 176 ~~i~~~~-------~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~ 218 (309)
T PF01207_consen 176 AEIKEAL-------PIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALG 218 (309)
T ss_dssp HHCHHC--------TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC
T ss_pred HHHhhcc-------cceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhh
Confidence 6666653 4999999999999999999888 9999999998764
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0019 Score=78.57 Aligned_cols=108 Identities=17% Similarity=0.139 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhCC-----CCceEEEEcccc----C-----HHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCH
Q 000266 1140 LAQLIYDLKNANP-----GARISVKLVSEA----G-----VGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPW 1205 (1760)
Q Consensus 1140 LaqlI~~Lk~~~p-----~~pV~VKlv~~~----G-----vg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~ 1205 (1760)
+.++|..+|+..+ +.+|.+|+.+.. | .-.++..+.++|+|+|.|++.. .+.... ..... .
T Consensus 197 ~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~-~~~~~~--~~~~~---~ 270 (353)
T cd04735 197 PLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWD-FDRKSR--RGRDD---N 270 (353)
T ss_pred HHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCc-cccccc--cCCcc---h
Confidence 4677888888763 778999986521 2 1235667889999999998742 121110 01111 1
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000266 1206 ELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1206 ~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
...+..+.+.. ..++||++.|||.|..++.+++.-|||.|++|++++.
T Consensus 271 ~~~~~~ik~~~-----~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~lia 318 (353)
T cd04735 271 QTIMELVKERI-----AGRLPLIAVGSINTPDDALEALETGADLVAIGRGLLV 318 (353)
T ss_pred HHHHHHHHHHh-----CCCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHh
Confidence 12223333331 2368999999999999999999999999999999887
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0024 Score=78.58 Aligned_cols=110 Identities=10% Similarity=0.043 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhCC-CCceEEEEcccc------------------C-----HHHHHHHHHHcCCCEEEEecCCCCCCCCcc
Q 000266 1140 LAQLIYDLKNANP-GARISVKLVSEA------------------G-----VGVIASGVVKGHADHVLISGHDGGTGASRW 1195 (1760)
Q Consensus 1140 LaqlI~~Lk~~~p-~~pV~VKlv~~~------------------G-----vg~iA~~aakaGAD~IvIsG~~GGTGas~~ 1195 (1760)
+.++|..+|+..+ +-||+||+.+.. | ...++..+.++|+|+|.|++..-.. . .+
T Consensus 204 ~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~-~-~~ 281 (382)
T cd02931 204 AIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDA-W-YW 281 (382)
T ss_pred HHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcc-c-cc
Confidence 5678888888874 569999986410 1 1235666888999999998642111 0 00
Q ss_pred ccc-cccCCC-HHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC-CCccccchhHHH
Q 000266 1196 TGI-KNAGLP-WELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG-AEEFGFSTAPLI 1258 (1760)
Q Consensus 1196 ~si-~~~GlP-~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG-AdaVg~GTa~L~ 1258 (1760)
... ...+.. +......+.+. + ++||++.|+|++..++.+++.-| ||.|+||+++|.
T Consensus 282 ~~~~~~~~~~~~~~~~~~ik~~-----~--~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la 340 (382)
T cd02931 282 NHPPMYQKKGMYLPYCKALKEV-----V--DVPVIMAGRMEDPELASEAINEGIADMISLGRPLLA 340 (382)
T ss_pred ccCCccCCcchhHHHHHHHHHH-----C--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHh
Confidence 000 011111 11122333332 2 58999999999999999999987 999999999887
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >PRK00507 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0043 Score=71.16 Aligned_cols=102 Identities=21% Similarity=0.158 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccccC------HHHHHHHHHHcCCCEEEEe-cCCCCCCCCccccccccCCCHHHHH
Q 000266 1137 IEDLAQLIYDLKNANPGARISVKLVSEAG------VGVIASGVVKGHADHVLIS-GHDGGTGASRWTGIKNAGLPWELGL 1209 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~~G------vg~iA~~aakaGAD~IvIs-G~~GGTGas~~~si~~~GlP~~~~L 1209 (1760)
++.+.+-|..+++.. .|+.+|++-+.+ +..+...+.++|+|+|..| |. +.+|+ +...+
T Consensus 105 ~~~v~~ei~~v~~~~--~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTsTG~-~~~ga------------t~~~v 169 (221)
T PRK00507 105 WDAVEADIRAVVEAA--GGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTSTGF-STGGA------------TVEDV 169 (221)
T ss_pred HHHHHHHHHHHHHhc--CCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCCCC-CCCCC------------CHHHH
Confidence 566777777777653 367899854332 3334556889999988764 33 22222 22333
Q ss_pred HHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000266 1210 AETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1210 aev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
...++. ++.++.|.++|||+|..|+...+.+||+.+|..++.-+
T Consensus 170 ~~m~~~-----~~~~~~IKasGGIrt~~~a~~~i~aGA~riGtS~~~~i 213 (221)
T PRK00507 170 KLMRET-----VGPRVGVKASGGIRTLEDALAMIEAGATRLGTSAGVAI 213 (221)
T ss_pred HHHHHH-----hCCCceEEeeCCcCCHHHHHHHHHcCcceEccCcHHHH
Confidence 334444 34689999999999999999999999999998876544
|
|
| >cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0037 Score=77.24 Aligned_cols=132 Identities=22% Similarity=0.293 Sum_probs=98.5
Q ss_pred HHHHHHHcC-CcEEEEcCCCCCC--------CCccccHHHHHHHHHHHHHHcCCCCceeEEEeeCCCCcHHHHHHHHhcC
Q 000266 735 EARDAIKEG-YTLLVLSDRAFSS--------KRVAVSSLLAVGAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFG 805 (1760)
Q Consensus 735 ~a~~av~~G-~~iliLsDr~~~~--------~~~~ip~lLav~avh~~Li~~~~R~~~~lvvesge~re~Hh~a~L~GyG 805 (1760)
++..+++.| +..|++|-..-+. +...+|.+.++..||++|.+.++|.++.||+ +|-+|+-.|++-.+-+|
T Consensus 229 ~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~via-sGGI~~g~Dv~kalaLG 307 (392)
T cd02808 229 DIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIA-SGGLRTGADVAKALALG 307 (392)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEE-ECCCCCHHHHHHHHHcC
Confidence 444555555 9999999874322 3456899999999999999999999999999 89999999999999999
Q ss_pred ccccc---HHHHH-HHHH-HHHHcCCCCC---CCCC------CCCCHHHHHHHHHHHHHHHHHHHHHhhchhhhhc
Q 000266 806 ADAIC---PYLAT-EAIW-RLQVDGKIPP---KASG------EFHSKDELVKKYFKASNYGMMKVLAKMGISTLAS 867 (1760)
Q Consensus 806 A~av~---Pyla~-e~~~-~~~~~~~~~~---~~~~------~~~~~~~~~~ny~~a~~~GllKvmsKMGIstl~S 867 (1760)
||+|. |+|.- +++. +-+..+..|. +.+. .-....+.+.||.+.+...|..+|.-||.++++.
T Consensus 308 Ad~V~ig~~~l~al~c~~~~~c~~~~cP~Giat~~~~~~~~~~~~~~~~~v~~~~~~~~~el~~~m~~~G~~~~~~ 383 (392)
T cd02808 308 ADAVGIGTAALIALGCIQARKCHTNTCPVGVATQDPELRRRLDVEGKAERVANYLKSLAEELRELAAALGKRSLEL 383 (392)
T ss_pred CCeeeechHHHHhcchHHHHhcCCCCCCcccccCChHhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHhCCCChHH
Confidence 99994 55532 2221 1123444433 1110 0123577889999999999999999999998775
|
GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. |
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0037 Score=75.81 Aligned_cols=102 Identities=13% Similarity=0.075 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhCCCCceEEEEcccc---C------H---HHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHH
Q 000266 1140 LAQLIYDLKNANPGARISVKLVSEA---G------V---GVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWEL 1207 (1760)
Q Consensus 1140 LaqlI~~Lk~~~p~~pV~VKlv~~~---G------v---g~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~ 1207 (1760)
+.++|..+|+..+.-+|+||+.+.- | . ..++..+.++|+|+|.||+. .+.... .-++..
T Consensus 205 ~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g--~~~~~~-------~~~~~~ 275 (338)
T cd02933 205 LLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEP--RVAGNP-------EDQPPD 275 (338)
T ss_pred HHHHHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecC--CCCCcc-------cccchH
Confidence 4678888888765448999996531 1 1 24566788999999999753 221111 112233
Q ss_pred HHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC-CCccccchhHHH
Q 000266 1208 GLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG-AEEFGFSTAPLI 1258 (1760)
Q Consensus 1208 ~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG-AdaVg~GTa~L~ 1258 (1760)
...++.+.+ ++||++.|||. ..++.+++.-| ||.|+||+++|.
T Consensus 276 ~~~~ik~~~-------~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~~la 319 (338)
T cd02933 276 FLDFLRKAF-------KGPLIAAGGYD-AESAEAALADGKADLVAFGRPFIA 319 (338)
T ss_pred HHHHHHHHc-------CCCEEEECCCC-HHHHHHHHHcCCCCEEEeCHhhhh
Confidence 444555542 58999999997 99999999987 999999999876
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0037 Score=75.74 Aligned_cols=106 Identities=12% Similarity=0.014 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhCCCCceEEEEccc----cCH-----HHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHH
Q 000266 1140 LAQLIYDLKNANPGARISVKLVSE----AGV-----GVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLA 1210 (1760)
Q Consensus 1140 LaqlI~~Lk~~~p~~pV~VKlv~~----~Gv-----g~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~La 1210 (1760)
+.++|..+|+.. +.||.||+.+. .|. ..++..+.++|+|.|.|++. +- .+.......|. ......
T Consensus 195 ~~eii~~ir~~~-~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g---~~-~~~~~~~~~~~-~~~~~~ 268 (337)
T PRK13523 195 LREIIDAVKEVW-DGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSG---AV-VPARIDVYPGY-QVPFAE 268 (337)
T ss_pred HHHHHHHHHHhc-CCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCC---CC-CCCCCCCCccc-cHHHHH
Confidence 467788888886 67999999752 122 23566788899999999864 21 11000111121 222333
Q ss_pred HHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC-CCccccchhHHH
Q 000266 1211 ETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG-AEEFGFSTAPLI 1258 (1760)
Q Consensus 1211 ev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG-AdaVg~GTa~L~ 1258 (1760)
++.+. .++||++.|+|.|+.++.+++.-| ||.|+|||+++.
T Consensus 269 ~ik~~-------~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~ia 310 (337)
T PRK13523 269 HIREH-------ANIATGAVGLITSGAQAEEILQNNRADLIFIGRELLR 310 (337)
T ss_pred HHHhh-------cCCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHh
Confidence 33333 258999999999999999999988 999999999886
|
|
| >KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.013 Score=70.55 Aligned_cols=171 Identities=12% Similarity=0.153 Sum_probs=110.5
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEccccCHH---HHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHH
Q 000266 1136 SIEDLAQLIYDLKNANPGARISVKLVSEAGVG---VIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAET 1212 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg---~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev 1212 (1760)
.+|-+.++|..++... ++||++|.--..... ..|..+.++|++.++|-|..--..+. -.|+--..++..+
T Consensus 125 ~~eLv~e~V~~v~~~l-~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~------~~~pad~~~i~~v 197 (358)
T KOG2335|consen 125 NPELVGEMVSAVRANL-NVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGL------KTGPADWEAIKAV 197 (358)
T ss_pred CHHHHHHHHHHHHhhc-CCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEecccHHhcCC------CCCCcCHHHHHHH
Confidence 4677788999998876 889999985433332 35777999999999997753221110 0222222344444
Q ss_pred HHHHHhCCCCCceEEEEcCCcCCHHHHHHHHH-cCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcCCC
Q 000266 1213 HQTLVANDLRGRTILQTDGQLKTGRDVAIAAL-LGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGE 1291 (1760)
Q Consensus 1213 ~q~L~~~glr~rV~LiadGGIrtG~DVaKAla-LGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g~ 1291 (1760)
.+. +.+ |||++-|+|.+-.|+-.++- -||++|+.|++.|.--+-- ..-.-..||.+++.+.-.....|.|.
T Consensus 198 ~~~-----~~~-ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~NPa~F--~~~~~~~~~~~~~~~~l~~~~e~~g~ 269 (358)
T KOG2335|consen 198 REN-----VPD-IPVIANGNILSLEDVERCLKYTGADGVMSARGLLYNPALF--LTAGYGPTPWGCVEEYLDIAREFGGL 269 (358)
T ss_pred HHh-----CcC-CcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhcCchhh--ccCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 443 444 99999999999999999998 9999999999987521100 00234578888876655555555544
Q ss_pred H------HHHHHHHH---HHHHHHHHHHHhcC-CCChhhh
Q 000266 1292 P------EHVINFFF---MLAEELREIMSQLG-FRTITEM 1321 (1760)
Q Consensus 1292 ~------e~V~n~~~---~l~~ELr~~Ma~lG-~~si~EL 1321 (1760)
+ .|+...+. .+.+++|..++.++ +.++.++
T Consensus 270 ~~~~~~~~Hl~~m~~~~~~~~~~~r~~~~~~~~~~~~~~~ 309 (358)
T KOG2335|consen 270 SSFSLIRHHLFKMLRPLLSIHQDLRRDLAALNSCESVIDF 309 (358)
T ss_pred chhhHHHHHHHHHHHHHHhhhHHHHHHHhhccchhhHHHH
Confidence 2 33333333 23345677777766 5666665
|
|
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0071 Score=73.48 Aligned_cols=110 Identities=16% Similarity=0.182 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhC-CCCceEEEEcccc----C-----HHHHHHHHHHcC-CCEEEEecCCCCCCCC----ccccccccCC-
Q 000266 1140 LAQLIYDLKNAN-PGARISVKLVSEA----G-----VGVIASGVVKGH-ADHVLISGHDGGTGAS----RWTGIKNAGL- 1203 (1760)
Q Consensus 1140 LaqlI~~Lk~~~-p~~pV~VKlv~~~----G-----vg~iA~~aakaG-AD~IvIsG~~GGTGas----~~~si~~~Gl- 1203 (1760)
+.++|..+|+.. ++.+|.+|+.+.. | .-.++..+.++| +|+|.|++. ..... ....-...+.
T Consensus 194 ~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g--~~~~~~~~~~~~~~~~~~~~ 271 (343)
T cd04734 194 LLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAG--SYYTLLGLAHVVPSMGMPPG 271 (343)
T ss_pred HHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCC--CCCcccccccccCCCCCCcc
Confidence 467788888875 3567888886521 1 224566788898 899999753 11110 0000001111
Q ss_pred CHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC-CCccccchhHHH
Q 000266 1204 PWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG-AEEFGFSTAPLI 1258 (1760)
Q Consensus 1204 P~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG-AdaVg~GTa~L~ 1258 (1760)
++......+.+.+ ++||++.|+|.|..++.+++.-| ||.|++|++++.
T Consensus 272 ~~~~~~~~ik~~~-------~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~la 320 (343)
T cd04734 272 PFLPLAARIKQAV-------DLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIA 320 (343)
T ss_pred hhHHHHHHHHHHc-------CCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHh
Confidence 1223334444432 58999999999999999999987 999999999887
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0048 Score=71.21 Aligned_cols=101 Identities=20% Similarity=0.132 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHh
Q 000266 1139 DLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVA 1218 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~ 1218 (1760)
|+.+.|+..+...-+--..+-.. ..--..|+.++++|+++|-.=|..=|+| .|+.....|..+.+.
T Consensus 108 d~~~tv~aa~~L~~~Gf~vlpyc--~dd~~~ar~l~~~G~~~vmPlg~pIGsg---------~Gi~~~~~I~~I~e~--- 173 (248)
T cd04728 108 DPIETLKAAEILVKEGFTVLPYC--TDDPVLAKRLEDAGCAAVMPLGSPIGSG---------QGLLNPYNLRIIIER--- 173 (248)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEe--CCCHHHHHHHHHcCCCEeCCCCcCCCCC---------CCCCCHHHHHHHHHh---
Confidence 45555655554421112222121 2334678889999999995533222222 133223444444432
Q ss_pred CCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHH
Q 000266 1219 NDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1219 ~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L 1257 (1760)
.++|||++|||.|+.|+.+|+.||||+|.+||+..
T Consensus 174 ----~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt 208 (248)
T cd04728 174 ----ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIA 208 (248)
T ss_pred ----CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhc
Confidence 25999999999999999999999999999999854
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.005 Score=71.12 Aligned_cols=103 Identities=19% Similarity=0.147 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHH
Q 000266 1137 IEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTL 1216 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L 1216 (1760)
..|+.+.|+..+...-+--+++-.. ..--..|+.++++|+|+|-.=|..=|+|. |+.....|..+.+.
T Consensus 106 lpd~~~tv~aa~~L~~~Gf~vlpyc--~~d~~~ak~l~~~G~~~vmPlg~pIGsg~---------gi~~~~~i~~i~e~- 173 (250)
T PRK00208 106 LPDPIETLKAAEILVKEGFVVLPYC--TDDPVLAKRLEEAGCAAVMPLGAPIGSGL---------GLLNPYNLRIIIEQ- 173 (250)
T ss_pred CcCHHHHHHHHHHHHHCCCEEEEEe--CCCHHHHHHHHHcCCCEeCCCCcCCCCCC---------CCCCHHHHHHHHHh-
Confidence 3455566666555421222222122 22345788899999999955222222321 22222234444332
Q ss_pred HhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHH
Q 000266 1217 VANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1217 ~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L 1257 (1760)
.++|||++|||.|+.|+.+|+.||||+|.+||+..
T Consensus 174 ------~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAIt 208 (250)
T PRK00208 174 ------ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIA 208 (250)
T ss_pred ------cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhh
Confidence 25999999999999999999999999999999854
|
|
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0095 Score=72.14 Aligned_cols=109 Identities=18% Similarity=0.183 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhCC-CCceEEEEccc----cCH-----HHHHHHHHHcCCCEEEEecCCCCCCCCcccc---ccccCCC--
Q 000266 1140 LAQLIYDLKNANP-GARISVKLVSE----AGV-----GVIASGVVKGHADHVLISGHDGGTGASRWTG---IKNAGLP-- 1204 (1760)
Q Consensus 1140 LaqlI~~Lk~~~p-~~pV~VKlv~~----~Gv-----g~iA~~aakaGAD~IvIsG~~GGTGas~~~s---i~~~GlP-- 1204 (1760)
+.+.|..+|+..+ +.||.||+.+. .|. ..++..+.++|+|.|.|++. +...+... ......+
T Consensus 202 ~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g---~~~~~~~~~~~~~~~~~~~~ 278 (338)
T cd04733 202 LLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGG---TYESPAMAGAKKESTIAREA 278 (338)
T ss_pred HHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCC---CCCCccccccccCCccccch
Confidence 4678888988874 67999998631 121 24566788999999999763 22111110 0000001
Q ss_pred -HHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC-CCccccchhHHH
Q 000266 1205 -WELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG-AEEFGFSTAPLI 1258 (1760)
Q Consensus 1205 -~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG-AdaVg~GTa~L~ 1258 (1760)
+.....++.+. .++||+++|+|.|..++.+++..| ||.|+||++++.
T Consensus 279 ~~~~~~~~ik~~-------v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~ia 327 (338)
T cd04733 279 YFLEFAEKIRKV-------TKTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLAL 327 (338)
T ss_pred hhHHHHHHHHHH-------cCCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhh
Confidence 12223334333 269999999999999999999998 899999999886
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0084 Score=72.51 Aligned_cols=108 Identities=14% Similarity=0.119 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHhCC-CCceEEEEccc----cC--H---HHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCH-HH
Q 000266 1139 DLAQLIYDLKNANP-GARISVKLVSE----AG--V---GVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPW-EL 1207 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p-~~pV~VKlv~~----~G--v---g~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~-~~ 1207 (1760)
-+.+.|..+|+..+ +.||.||+.+. .| . ..++..+.++|+|+|.|++. +.+... ....+.++ ..
T Consensus 206 f~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g-~~~~~~----~~~~~~~~~~~ 280 (336)
T cd02932 206 FLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSG-GNSPAQ----KIPVGPGYQVP 280 (336)
T ss_pred HHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCC-CCCccc----ccCCCccccHH
Confidence 35678888888874 67999998642 11 2 23556678899999999753 222110 01111122 23
Q ss_pred HHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC-CCccccchhHHH
Q 000266 1208 GLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG-AEEFGFSTAPLI 1258 (1760)
Q Consensus 1208 ~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG-AdaVg~GTa~L~ 1258 (1760)
.+.++.+. .++||++.|+|.|..|+..++.-| ||.|++||+++.
T Consensus 281 ~~~~ir~~-------~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~ 325 (336)
T cd02932 281 FAERIRQE-------AGIPVIAVGLITDPEQAEAILESGRADLVALGRELLR 325 (336)
T ss_pred HHHHHHhh-------CCCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHh
Confidence 33334333 258999999999999999999999 999999999886
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0087 Score=70.29 Aligned_cols=103 Identities=19% Similarity=0.113 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhCCCCceEEEEccccCHHHH--HHHHHHcCCCEEEEecCCCCCCC------------------Ccc---c
Q 000266 1140 LAQLIYDLKNANPGARISVKLVSEAGVGVI--ASGVVKGHADHVLISGHDGGTGA------------------SRW---T 1196 (1760)
Q Consensus 1140 LaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~i--A~~aakaGAD~IvIsG~~GGTGa------------------s~~---~ 1196 (1760)
+.++++.+|..+ +.|+.. |+.++ |..+.++|||+|--.+. |+|+. ... +
T Consensus 100 ~~~~~~~iK~~~-~~l~MA------D~stleEal~a~~~Gad~I~TTl~-gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t 171 (283)
T cd04727 100 ADEEHHIDKHKF-KVPFVC------GARNLGEALRRISEGAAMIRTKGE-AGTGNVVEAVRHMRAVNGEIRKLQSMSEEE 171 (283)
T ss_pred HHHHHHHHHHHc-CCcEEc------cCCCHHHHHHHHHCCCCEEEecCC-CCCCcHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 356788888876 666632 34444 45599999999977766 66765 111 1
Q ss_pred ---cccccCCCHHHHHHHHHHHHHhCCCCCceEEE--EcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000266 1197 ---GIKNAGLPWELGLAETHQTLVANDLRGRTILQ--TDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1197 ---si~~~GlP~~~~Laev~q~L~~~glr~rV~Li--adGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
..+..+.+ ...|.++.+.. ++||+ +.|||.|+.|+..++.+||++|.+|++++-
T Consensus 172 ~~~~~~~~~~d-~elLk~l~~~~-------~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~ 230 (283)
T cd04727 172 LYAVAKEIQAP-YELVKETAKLG-------RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 230 (283)
T ss_pred HHhhhcccCCC-HHHHHHHHHhc-------CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhc
Confidence 01122333 34566666642 47886 999999999999999999999999998774
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0082 Score=70.54 Aligned_cols=102 Identities=20% Similarity=0.138 Sum_probs=72.6
Q ss_pred HHHHHHHHHhCCCCceEEEEccccCHHHH--HHHHHHcCCCEEEEecCCCCCCCCc---------------c--------
Q 000266 1141 AQLIYDLKNANPGARISVKLVSEAGVGVI--ASGVVKGHADHVLISGHDGGTGASR---------------W-------- 1195 (1760)
Q Consensus 1141 aqlI~~Lk~~~p~~pV~VKlv~~~Gvg~i--A~~aakaGAD~IvIsG~~GGTGas~---------------~-------- 1195 (1760)
.++++..|..+ +.|+.. |+.++ |..+.+.|||.|--.|. ||||.-. .
T Consensus 103 de~~~~~K~~f-~vpfma------d~~~l~EAlrai~~GadmI~Tt~e-~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~ 174 (287)
T TIGR00343 103 DWTFHIDKKKF-KVPFVC------GARDLGEALRRINEGAAMIRTKGE-AGTGNIVEAVRHMRKINEEIRQIQNMLEEED 174 (287)
T ss_pred HHHHHHHHHHc-CCCEEc------cCCCHHHHHHHHHCCCCEEecccc-CCCccHHHHHHHHHHHHHHHHHHhcccchhH
Confidence 46677788877 667633 33333 45588999999988777 7787500 0
Q ss_pred --ccccccCCCHHHHHHHHHHHHHhCCCCCceEEE--EcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000266 1196 --TGIKNAGLPWELGLAETHQTLVANDLRGRTILQ--TDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1196 --~si~~~GlP~~~~Laev~q~L~~~glr~rV~Li--adGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
..-+..+.| ...|.++.+. .++||+ +.|||.|+.|+..++.+||++|.+|++++-
T Consensus 175 ~~~~a~~~~~~-~elLkei~~~-------~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~k 233 (287)
T TIGR00343 175 LAAVAKELRVP-VELLLEVLKL-------GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 233 (287)
T ss_pred HhhhhcccCCC-HHHHHHHHHh-------CCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhc
Confidence 001234544 4567776653 258887 999999999999999999999999998664
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0015 Score=84.40 Aligned_cols=55 Identities=22% Similarity=0.514 Sum_probs=51.3
Q ss_pred cccCccccccCCCCCCHHHHhcCchhhccCCCChhHHHHHHhhhcCCCCCcccCCCCCCC
Q 000266 1701 HRGFIAYEREGVQYRDPNIRMNDWKEVMEESKPGPLLKTQSARCMDCGTPFCHQVCIAPF 1760 (1760)
Q Consensus 1701 ~~gF~~~~R~~~~~r~~~~R~~Df~Ev~~~l~~~~~a~~QAaRCMdCG~PfC~~~~gCPl 1760 (1760)
..-|++++|....++++..|+++|+|++.++ +.+++..|+.||++||. |+. .||.
T Consensus 145 ~~~f~~~~~~~~~~~~~~~r~~~~~~~~~g~-~~~~~~~~~~~C~~Cg~--C~~--~CP~ 199 (604)
T PRK13984 145 NSELLDLERVEMEEIPPEERVKSFIEIVKGY-SKEQAMQEAARCVECGI--CTD--TCPA 199 (604)
T ss_pred hhhhhccccCCcccCCHHHHHhchhhhccCC-CHHHHHHhhhhhcCCCc--ccc--cCCC
Confidence 4678999999999999999999999999999 89999999999999995 998 8995
|
|
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.06 Score=62.59 Aligned_cols=106 Identities=20% Similarity=0.151 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHH
Q 000266 1137 IEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTL 1216 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L 1216 (1760)
.+++..++..+|+. +..+++=+.+......+ ...++....++.+ +..+|||. .+ + ..+.+..+.+
T Consensus 115 ~~~~~~~~~~~~~~--Gl~~~~~v~p~T~~e~l-~~~~~~~~~~l~m-sv~~~~g~-~~--------~--~~~~~~i~~l 179 (244)
T PRK13125 115 PDDLEKYVEIIKNK--GLKPVFFTSPKFPDLLI-HRLSKLSPLFIYY-GLRPATGV-PL--------P--VSVERNIKRV 179 (244)
T ss_pred HHHHHHHHHHHHHc--CCCEEEEECCCCCHHHH-HHHHHhCCCEEEE-EeCCCCCC-Cc--------h--HHHHHHHHHH
Confidence 46677788888877 55666655554444443 3355555566656 66677764 21 1 1222222222
Q ss_pred HhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHH
Q 000266 1217 VANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLIT 1259 (1760)
Q Consensus 1217 ~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~A 1259 (1760)
++ +..+.+|+++|||+|..++.+++..|||+|-+||+++-.
T Consensus 180 r~--~~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~~ 220 (244)
T PRK13125 180 RN--LVGNKYLVVGFGLDSPEDARDALSAGADGVVVGTAFIEE 220 (244)
T ss_pred HH--hcCCCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHHH
Confidence 22 122457999999999999999999999999999987753
|
|
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.016 Score=70.64 Aligned_cols=109 Identities=11% Similarity=0.022 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhC-CCCceEEEEccc----c--C---HHHHHHHHHHcCCCEEEEecC--CCCCCCCccccccccCC-CH
Q 000266 1139 DLAQLIYDLKNAN-PGARISVKLVSE----A--G---VGVIASGVVKGHADHVLISGH--DGGTGASRWTGIKNAGL-PW 1205 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~-p~~pV~VKlv~~----~--G---vg~iA~~aakaGAD~IvIsG~--~GGTGas~~~si~~~Gl-P~ 1205 (1760)
-+.++|..+|+.. ++.+|.||+... . . .-.++..+.++|+|+|.||+. +..+...+ ...+. .+
T Consensus 189 ~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~----~~~~~~~~ 264 (353)
T cd02930 189 FPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIA----TSVPRGAF 264 (353)
T ss_pred HHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCcccc----ccCCchhh
Confidence 3567788888876 467889998642 1 1 123566688899999999752 22221000 01111 13
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC-CCccccchhHHH
Q 000266 1206 ELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG-AEEFGFSTAPLI 1258 (1760)
Q Consensus 1206 ~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG-AdaVg~GTa~L~ 1258 (1760)
.....++.+. .++||++.|+|.+..++.+++.-| +|.|++|+++|.
T Consensus 265 ~~~~~~ik~~-------v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~ 311 (353)
T cd02930 265 AWATAKLKRA-------VDIPVIASNRINTPEVAERLLADGDADMVSMARPFLA 311 (353)
T ss_pred HHHHHHHHHh-------CCCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHH
Confidence 3344455443 268999999999999999999987 999999999887
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.028 Score=65.91 Aligned_cols=37 Identities=14% Similarity=0.015 Sum_probs=33.6
Q ss_pred ceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHh
Q 000266 1224 RTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITL 1260 (1760)
Q Consensus 1224 rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Al 1260 (1760)
+.+|+++|||+|+.++.+++..|||+|-+|++++-.+
T Consensus 198 ~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv~~~ 234 (256)
T TIGR00262 198 AKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIVKII 234 (256)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHH
Confidence 4689999999999999999999999999999987543
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.015 Score=65.75 Aligned_cols=110 Identities=23% Similarity=0.257 Sum_probs=76.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEccccCHH---HHHHHHHHcCCCEEEEecCCCCCCCCcccc-c---cccCCCHHH
Q 000266 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEAGVG---VIASGVVKGHADHVLISGHDGGTGASRWTG-I---KNAGLPWEL 1207 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg---~iA~~aakaGAD~IvIsG~~GGTGas~~~s-i---~~~GlP~~~ 1207 (1760)
.+.+++..+.++.|+.-|+.+++|-++..-... ..|..+.++|+|.|.- +|||..-|... + -.-..|+
T Consensus 100 f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQT---EGgtss~p~~~g~lglIekaapT-- 174 (242)
T PF04481_consen 100 FSAEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQT---EGGTSSKPTSPGILGLIEKAAPT-- 174 (242)
T ss_pred ecHHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEEEc---CCCCCCCCCCcchHHHHHHHhHH--
Confidence 356788889999999999999999976543332 3678899999999964 45665444211 0 0112243
Q ss_pred HHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000266 1208 GLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1208 ~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
|+.+|..-+. .++||+.+.||.. --+=.|+++||.+||+|++
T Consensus 175 -LAaay~ISr~----v~iPVlcASGlS~-vT~PmAiaaGAsGVGVGSa 216 (242)
T PF04481_consen 175 -LAAAYAISRA----VSIPVLCASGLSA-VTAPMAIAAGASGVGVGSA 216 (242)
T ss_pred -HHHHHHHHhc----cCCceEeccCcch-hhHHHHHHcCCcccchhHH
Confidence 3444443222 3699999999964 4467899999999999996
|
As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis. |
| >COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.013 Score=66.90 Aligned_cols=102 Identities=24% Similarity=0.305 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEccccCHHH------HHHHHHHcCCCEEEEe-cCCCCCCCCccccccccCCCHHHH
Q 000266 1136 SIEDLAQLIYDLKNANPGARISVKLVSEAGVGV------IASGVVKGHADHVLIS-GHDGGTGASRWTGIKNAGLPWELG 1208 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~------iA~~aakaGAD~IvIs-G~~GGTGas~~~si~~~GlP~~~~ 1208 (1760)
.++.+.+.|..++.+.++. +.||..-+.+.-+ ....+.++|||+|.-| |.. +.|++ ..-
T Consensus 107 ~~~~V~~eI~~v~~a~~~~-~~lKVIlEt~~Lt~ee~~~A~~i~~~aGAdFVKTSTGf~-~~gAT------------~ed 172 (228)
T COG0274 107 NWEAVEREIRAVVEACADA-VVLKVILETGLLTDEEKRKACEIAIEAGADFVKTSTGFS-AGGAT------------VED 172 (228)
T ss_pred CHHHHHHHHHHHHHHhCCC-ceEEEEEeccccCHHHHHHHHHHHHHhCCCEEEcCCCCC-CCCCC------------HHH
Confidence 3677888898888887554 7888876655433 2234889999999765 332 22222 122
Q ss_pred HHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhH
Q 000266 1209 LAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAP 1256 (1760)
Q Consensus 1209 Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~ 1256 (1760)
+.-..++ ++.+|-|=++|||||..|+.+++.+||..+|..+..
T Consensus 173 v~lM~~~-----vg~~vgvKaSGGIrt~eda~~~i~aga~RiGtSs~v 215 (228)
T COG0274 173 VKLMKET-----VGGRVGVKASGGIRTAEDAKAMIEAGATRIGTSSGV 215 (228)
T ss_pred HHHHHHH-----hccCceeeccCCcCCHHHHHHHHHHhHHHhccccHH
Confidence 2222233 356789999999999999999999999998877754
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.023 Score=65.13 Aligned_cols=74 Identities=14% Similarity=-0.033 Sum_probs=54.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHH-HHHc
Q 000266 1167 GVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAI-AALL 1245 (1760)
Q Consensus 1167 g~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaK-AlaL 1245 (1760)
...+..+.++|+|.|++++.+... . ..|. ....+.++.+. ..+||++.|||++..|+.+ ....
T Consensus 156 ~~~~~~~~~~G~d~i~i~~i~~~g-~-------~~g~-~~~~~~~i~~~-------~~ipvia~GGi~s~~di~~~l~~~ 219 (232)
T TIGR03572 156 VEWAREAEQLGAGEILLNSIDRDG-T-------MKGY-DLELIKTVSDA-------VSIPVIALGGAGSLDDLVEVALEA 219 (232)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccC-C-------cCCC-CHHHHHHHHhh-------CCCCEEEECCCCCHHHHHHHHHHc
Confidence 456777889999999999853311 1 1232 23344455443 2589999999999999999 6779
Q ss_pred CCCccccchhH
Q 000266 1246 GAEEFGFSTAP 1256 (1760)
Q Consensus 1246 GAdaVg~GTa~ 1256 (1760)
||++|.+||++
T Consensus 220 gadgV~vg~a~ 230 (232)
T TIGR03572 220 GASAVAAASLF 230 (232)
T ss_pred CCCEEEEehhh
Confidence 99999999986
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.025 Score=69.42 Aligned_cols=109 Identities=16% Similarity=0.168 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhCC-CCceEEEEccc-c----C-----HHHHHHHHHHcC-CCEEEEecCCCCCCCCccccccccCCCHHH
Q 000266 1140 LAQLIYDLKNANP-GARISVKLVSE-A----G-----VGVIASGVVKGH-ADHVLISGHDGGTGASRWTGIKNAGLPWEL 1207 (1760)
Q Consensus 1140 LaqlI~~Lk~~~p-~~pV~VKlv~~-~----G-----vg~iA~~aakaG-AD~IvIsG~~GGTGas~~~si~~~GlP~~~ 1207 (1760)
+.++++.+|++.+ +.||++++.+. . | ...++..+.+.| +|.|.+++.+--.+.. +...+ |.-
T Consensus 202 ~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~----~~~~~-~~~- 275 (363)
T COG1902 202 LLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGT----ITVSG-PGY- 275 (363)
T ss_pred HHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCC----ccccc-cch-
Confidence 4677888888874 45799999763 1 2 134677788999 7999998742211111 11111 110
Q ss_pred HHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC-CCccccchhHHH
Q 000266 1208 GLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG-AEEFGFSTAPLI 1258 (1760)
Q Consensus 1208 ~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG-AdaVg~GTa~L~ 1258 (1760)
-+..+ ..++. ..++|||+.|+|.++..+-.+++-| ||.|+|||++|.
T Consensus 276 ~~~~a-~~i~~---~~~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~la 323 (363)
T COG1902 276 QVEFA-ARIKK---AVRIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLA 323 (363)
T ss_pred hHHHH-HHHHH---hcCCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhc
Confidence 01111 11111 1259999999999999999999998 999999999987
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.028 Score=64.14 Aligned_cols=77 Identities=13% Similarity=0.058 Sum_probs=57.4
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHc
Q 000266 1166 VGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALL 1245 (1760)
Q Consensus 1166 vg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaL 1245 (1760)
....+..+.+.|+|.|++.+.+- .|. ..| |....+.++.+. .++||++.|||++..|+.+++..
T Consensus 148 ~~~~~~~~~~~ga~~iii~~~~~-~g~-------~~g-~~~~~i~~i~~~-------~~ipvi~~GGi~~~~di~~~~~~ 211 (234)
T cd04732 148 LEELAKRFEELGVKAIIYTDISR-DGT-------LSG-PNFELYKELAAA-------TGIPVIASGGVSSLDDIKALKEL 211 (234)
T ss_pred HHHHHHHHHHcCCCEEEEEeecC-CCc-------cCC-CCHHHHHHHHHh-------cCCCEEEecCCCCHHHHHHHHHC
Confidence 34567778899999999865421 111 123 223456666554 25999999999999999999999
Q ss_pred CCCccccchhHHH
Q 000266 1246 GAEEFGFSTAPLI 1258 (1760)
Q Consensus 1246 GAdaVg~GTa~L~ 1258 (1760)
||++|.+|++++.
T Consensus 212 Ga~gv~vg~~~~~ 224 (234)
T cd04732 212 GVAGVIVGKALYE 224 (234)
T ss_pred CCCEEEEeHHHHc
Confidence 9999999999765
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.025 Score=66.88 Aligned_cols=95 Identities=18% Similarity=0.166 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHhCCC-CceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHH
Q 000266 1138 EDLAQLIYDLKNANPG-ARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTL 1216 (1760)
Q Consensus 1138 edLaqlI~~Lk~~~p~-~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L 1216 (1760)
+.+.+.|..+|+..|. .+|.|= +..-.-|..++++|||+|.+|+.+ ..-|.++.+.+
T Consensus 166 g~i~~~v~~~k~~~p~~~~I~VE----v~tleea~~A~~~GaDiI~LDn~~------------------~e~l~~~v~~~ 223 (273)
T PRK05848 166 KDLKEFIQHARKNIPFTAKIEIE----CESLEEAKNAMNAGADIVMCDNMS------------------VEEIKEVVAYR 223 (273)
T ss_pred CcHHHHHHHHHHhCCCCceEEEE----eCCHHHHHHHHHcCCCEEEECCCC------------------HHHHHHHHHHh
Confidence 4678889999998874 566554 233455677999999999988751 24556666654
Q ss_pred HhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHH
Q 000266 1217 VANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1217 ~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L 1257 (1760)
.. ...++.|.++||| |...+.+.+.+|+|.+.+|+..-
T Consensus 224 ~~--~~~~~~ieAsGgI-t~~ni~~ya~~GvD~IsvG~l~~ 261 (273)
T PRK05848 224 NA--NYPHVLLEASGNI-TLENINAYAKSGVDAISSGSLIH 261 (273)
T ss_pred hc--cCCCeEEEEECCC-CHHHHHHHHHcCCCEEEeChhhc
Confidence 32 1246899999999 99999999999999999998643
|
|
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.027 Score=64.28 Aligned_cols=75 Identities=15% Similarity=0.041 Sum_probs=55.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCC-CCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHc
Q 000266 1167 GVIASGVVKGHADHVLISGHDG-GTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALL 1245 (1760)
Q Consensus 1167 g~iA~~aakaGAD~IvIsG~~G-GTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaL 1245 (1760)
-..+..+.+.|+|.|++..-+. |+. .| +....+.++.+. .++||++.|||++..|+.+++..
T Consensus 148 ~~~~~~~~~~g~~~ii~~~~~~~g~~---------~g-~~~~~i~~i~~~-------~~ipvia~GGi~~~~di~~~~~~ 210 (230)
T TIGR00007 148 EELAKRLEELGLEGIIYTDISRDGTL---------SG-PNFELTKELVKA-------VNVPVIASGGVSSIDDLIALKKL 210 (230)
T ss_pred HHHHHHHHhCCCCEEEEEeecCCCCc---------CC-CCHHHHHHHHHh-------CCCCEEEeCCCCCHHHHHHHHHC
Confidence 3467778999999887643322 221 12 223455555543 25899999999999999999999
Q ss_pred CCCccccchhHHH
Q 000266 1246 GAEEFGFSTAPLI 1258 (1760)
Q Consensus 1246 GAdaVg~GTa~L~ 1258 (1760)
||++|.+||+++.
T Consensus 211 Gadgv~ig~a~~~ 223 (230)
T TIGR00007 211 GVYGVIVGKALYE 223 (230)
T ss_pred CCCEEEEeHHHHc
Confidence 9999999999875
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.021 Score=65.81 Aligned_cols=76 Identities=13% Similarity=-0.003 Sum_probs=55.5
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHc-
Q 000266 1167 GVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALL- 1245 (1760)
Q Consensus 1167 g~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaL- 1245 (1760)
...+..+.++|+|.|++++.+-.+ . .-|..+ ..+.++.+. ..+||++.|||++..|+.+++.+
T Consensus 152 ~~~~~~l~~~G~d~i~v~~i~~~g-~-------~~g~~~-~~i~~i~~~-------~~~pvia~GGi~~~~di~~~l~~~ 215 (243)
T cd04731 152 VEWAKEVEELGAGEILLTSMDRDG-T-------KKGYDL-ELIRAVSSA-------VNIPVIASGGAGKPEHFVEAFEEG 215 (243)
T ss_pred HHHHHHHHHCCCCEEEEeccCCCC-C-------CCCCCH-HHHHHHHhh-------CCCCEEEeCCCCCHHHHHHHHHhC
Confidence 345677889999999998764311 1 113233 334444433 25999999999999999999998
Q ss_pred CCCccccchhHHH
Q 000266 1246 GAEEFGFSTAPLI 1258 (1760)
Q Consensus 1246 GAdaVg~GTa~L~ 1258 (1760)
||++|.+|+++.-
T Consensus 216 g~dgv~vg~al~~ 228 (243)
T cd04731 216 GADAALAASIFHF 228 (243)
T ss_pred CCCEEEEeHHHHc
Confidence 9999999998765
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.038 Score=65.50 Aligned_cols=95 Identities=18% Similarity=0.179 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHh
Q 000266 1139 DLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVA 1218 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~ 1218 (1760)
.+.+.|..+|+..|..+|.|-. ..-.-|..++++|||+|.+|+.. ..-+.++.+.++.
T Consensus 168 ~i~~av~~~r~~~~~~kIeVEv----~~leea~~a~~agaDiI~LDn~~------------------~e~l~~~v~~l~~ 225 (278)
T PRK08385 168 PLEEAIRRAKEFSVYKVVEVEV----ESLEDALKAAKAGADIIMLDNMT------------------PEEIREVIEALKR 225 (278)
T ss_pred HHHHHHHHHHHhCCCCcEEEEe----CCHHHHHHHHHcCcCEEEECCCC------------------HHHHHHHHHHHHh
Confidence 3677888899887777776664 33455677999999999999872 2467788887877
Q ss_pred CCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhH
Q 000266 1219 NDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAP 1256 (1760)
Q Consensus 1219 ~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~ 1256 (1760)
.+.+.++.|.++||| |...|.+.+..|+|.+.+|...
T Consensus 226 ~~~~~~~~leaSGGI-~~~ni~~yA~tGvD~Is~galt 262 (278)
T PRK08385 226 EGLRERVKIEVSGGI-TPENIEEYAKLDVDVISLGALT 262 (278)
T ss_pred cCcCCCEEEEEECCC-CHHHHHHHHHcCCCEEEeChhh
Confidence 666678999999999 9999999999999999999753
|
|
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.038 Score=63.54 Aligned_cols=76 Identities=17% Similarity=0.079 Sum_probs=57.0
Q ss_pred HHHHHHHHHHcCCCEEEEecCCC-CCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHH
Q 000266 1166 VGVIASGVVKGHADHVLISGHDG-GTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAAL 1244 (1760)
Q Consensus 1166 vg~iA~~aakaGAD~IvIsG~~G-GTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAla 1244 (1760)
.-..+..+.+.|++.|++.+.+- |+ .-|.. ...+.++.+.. .+||++.|||++..|+.+...
T Consensus 151 ~~~~~~~~~~~G~~~i~~~~~~~~g~---------~~g~~-~~~i~~i~~~~-------~iPvia~GGI~~~~di~~~~~ 213 (241)
T PRK13585 151 PVEAAKRFEELGAGSILFTNVDVEGL---------LEGVN-TEPVKELVDSV-------DIPVIASGGVTTLDDLRALKE 213 (241)
T ss_pred HHHHHHHHHHcCCCEEEEEeecCCCC---------cCCCC-HHHHHHHHHhC-------CCCEEEeCCCCCHHHHHHHHH
Confidence 44567778899999999876532 11 11322 33456665542 589999999999999999999
Q ss_pred cCCCccccchhHHH
Q 000266 1245 LGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1245 LGAdaVg~GTa~L~ 1258 (1760)
+||++|.+||+++-
T Consensus 214 ~Ga~gv~vgsa~~~ 227 (241)
T PRK13585 214 AGAAGVVVGSALYK 227 (241)
T ss_pred cCCCEEEEEHHHhc
Confidence 99999999998764
|
|
| >PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.01 Score=67.92 Aligned_cols=76 Identities=24% Similarity=0.195 Sum_probs=55.1
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHc
Q 000266 1166 VGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALL 1245 (1760)
Q Consensus 1166 vg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaL 1245 (1760)
--.+|+.+.++|+.+|--=|..=|+| .|+-....|..+.+.+ +||||+|+||.++.|++.|+.|
T Consensus 133 D~v~akrL~d~GcaavMPlgsPIGSg---------~Gi~n~~~l~~i~~~~-------~vPvIvDAGiG~pSdaa~AMEl 196 (247)
T PF05690_consen 133 DPVLAKRLEDAGCAAVMPLGSPIGSG---------RGIQNPYNLRIIIERA-------DVPVIVDAGIGTPSDAAQAMEL 196 (247)
T ss_dssp -HHHHHHHHHTT-SEBEEBSSSTTT------------SSTHHHHHHHHHHG-------SSSBEEES---SHHHHHHHHHT
T ss_pred CHHHHHHHHHCCCCEEEecccccccC---------cCCCCHHHHHHHHHhc-------CCcEEEeCCCCCHHHHHHHHHc
Confidence 34678999999999998877654553 2555556777776653 6999999999999999999999
Q ss_pred CCCccccchhHH
Q 000266 1246 GAEEFGFSTAPL 1257 (1760)
Q Consensus 1246 GAdaVg~GTa~L 1257 (1760)
|||+|.+-|+..
T Consensus 197 G~daVLvNTAiA 208 (247)
T PF05690_consen 197 GADAVLVNTAIA 208 (247)
T ss_dssp T-SEEEESHHHH
T ss_pred CCceeehhhHHh
Confidence 999999999854
|
ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C. |
| >CHL00162 thiG thiamin biosynthesis protein G; Validated | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.01 Score=68.65 Aligned_cols=76 Identities=22% Similarity=0.187 Sum_probs=58.5
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC
Q 000266 1167 GVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG 1246 (1760)
Q Consensus 1167 g~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG 1246 (1760)
-.+|+.+.++|+.+|--=|..=|+| -|+.....|..+.+. .+|+|++|+||.++.|+++|+.||
T Consensus 148 ~v~a~rLed~Gc~aVMPlgsPIGSg---------~Gl~n~~~l~~i~e~-------~~vpVivdAGIgt~sDa~~AmElG 211 (267)
T CHL00162 148 PMLAKHLEDIGCATVMPLGSPIGSG---------QGLQNLLNLQIIIEN-------AKIPVIIDAGIGTPSEASQAMELG 211 (267)
T ss_pred HHHHHHHHHcCCeEEeeccCcccCC---------CCCCCHHHHHHHHHc-------CCCcEEEeCCcCCHHHHHHHHHcC
Confidence 4678999999999998766544443 244444555544432 369999999999999999999999
Q ss_pred CCccccchhHHH
Q 000266 1247 AEEFGFSTAPLI 1258 (1760)
Q Consensus 1247 AdaVg~GTa~L~ 1258 (1760)
||+|.+.|+..-
T Consensus 212 aDgVL~nSaIak 223 (267)
T CHL00162 212 ASGVLLNTAVAQ 223 (267)
T ss_pred CCEEeecceeec
Confidence 999999997553
|
|
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.062 Score=61.00 Aligned_cols=100 Identities=17% Similarity=0.085 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHH
Q 000266 1137 IEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTL 1216 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L 1216 (1760)
.+++.+++...+.. +..+.+-. .+..+ +..+.+.|+|.|.+.+.++.+ .+.. ...+.++.+.
T Consensus 107 ~~~~~~~~~~~~~~--g~~~~v~v---~~~~e-~~~~~~~g~~~i~~t~~~~~~----------~~~~-~~~~~~l~~~- 168 (217)
T cd00331 107 DEQLKELYELAREL--GMEVLVEV---HDEEE-LERALALGAKIIGINNRDLKT----------FEVD-LNTTERLAPL- 168 (217)
T ss_pred HHHHHHHHHHHHHc--CCeEEEEE---CCHHH-HHHHHHcCCCEEEEeCCCccc----------cCcC-HHHHHHHHHh-
Confidence 35666666666544 33333332 23333 456888999999887554322 1211 2333444332
Q ss_pred HhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000266 1217 VANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1217 ~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
+...++|++.|||.+..|+.+++.+||++|.+|++++-
T Consensus 169 ----~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~ 206 (217)
T cd00331 169 ----IPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMR 206 (217)
T ss_pred ----CCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcC
Confidence 22358999999999999999999999999999998664
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.021 Score=64.15 Aligned_cols=93 Identities=23% Similarity=0.218 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhCCCCceEEEEccccCHHHH--HHHHHHcCCCEE--EEecCCCCCCCCccccccccCCCHHHHHHHHHH
Q 000266 1139 DLAQLIYDLKNANPGARISVKLVSEAGVGVI--ASGVVKGHADHV--LISGHDGGTGASRWTGIKNAGLPWELGLAETHQ 1214 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~i--A~~aakaGAD~I--vIsG~~GGTGas~~~si~~~GlP~~~~Laev~q 1214 (1760)
++.++|...|.. +.-+ + .++.++ +..|.++|+|+| +++|+.+-+ . +.. -|-...|.++.+
T Consensus 115 ~~~~~i~~~k~~--~~l~---M---AD~St~ee~l~a~~~G~D~IGTTLsGYT~~~---~----~~~-~pDf~lvk~l~~ 178 (229)
T COG3010 115 DLEELIARIKYP--GQLA---M---ADCSTFEEGLNAHKLGFDIIGTTLSGYTGYT---E----KPT-EPDFQLVKQLSD 178 (229)
T ss_pred hHHHHHHHhhcC--CcEE---E---eccCCHHHHHHHHHcCCcEEecccccccCCC---C----CCC-CCcHHHHHHHHh
Confidence 566777775433 3222 1 133333 344889999999 788886532 1 122 255566665554
Q ss_pred HHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000266 1215 TLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1215 ~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
. ..+||+-|.+-|+..+.+|+.+||++|-+|++
T Consensus 179 ~--------~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsA 211 (229)
T COG3010 179 A--------GCRVIAEGRYNTPEQAKKAIEIGADAVVVGSA 211 (229)
T ss_pred C--------CCeEEeeCCCCCHHHHHHHHHhCCeEEEECcc
Confidence 2 58899999999999999999999999999986
|
|
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.041 Score=67.70 Aligned_cols=109 Identities=12% Similarity=0.088 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhC-CCCceEEEEcccc----C----HH---HHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHH
Q 000266 1140 LAQLIYDLKNAN-PGARISVKLVSEA----G----VG---VIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWEL 1207 (1760)
Q Consensus 1140 LaqlI~~Lk~~~-p~~pV~VKlv~~~----G----vg---~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~ 1207 (1760)
+.++|..+|+.. ++.+|.+|+.+.. | .. .++..+.+ .+|+|.+++..=........ ...-|. +..
T Consensus 203 ~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~-~~D~i~vs~g~~~~~~~~~~-~~~~~~-~~~ 279 (370)
T cd02929 203 WRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFVEMLDE-LPDLWDVNVGDWANDGEDSR-FYPEGH-QEP 279 (370)
T ss_pred HHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHh-hCCEEEecCCCccccccccc-cCCccc-cHH
Confidence 567888899887 4678999986531 1 11 23333444 48999997531000000000 000111 122
Q ss_pred HHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC-CCccccchhHHH
Q 000266 1208 GLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG-AEEFGFSTAPLI 1258 (1760)
Q Consensus 1208 ~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG-AdaVg~GTa~L~ 1258 (1760)
...++.+. .++||++.|+|.+..++.+++.-| ||.|+||+++|.
T Consensus 280 ~~~~ik~~-------~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la 324 (370)
T cd02929 280 YIKFVKQV-------TSKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIA 324 (370)
T ss_pred HHHHHHHH-------CCCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhh
Confidence 22333333 258999999999999999999988 999999999886
|
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.0052 Score=80.51 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=39.8
Q ss_pred cccccCCCCCCHHHHhcCchhhccCCCChhHHHHHHhhhcCCCCC
Q 000266 1706 AYEREGVQYRDPNIRMNDWKEVMEESKPGPLLKTQSARCMDCGTP 1750 (1760)
Q Consensus 1706 ~~~R~~~~~r~~~~R~~Df~Ev~~~l~~~~~a~~QAaRCMdCG~P 1750 (1760)
+.+|..++.+++++|..+|+|+..+| ++++|..||+|||.|+-+
T Consensus 532 ~~~r~~~~~~~~~~r~~~f~ev~~~~-~~~~a~~EA~~~~~~~C~ 575 (652)
T PRK12814 532 PAPRVALPELPLEERTGGFEEVVTGY-SPEQAREEALRCLRCRCN 575 (652)
T ss_pred ccccccccccCHHHHhcCccccccCC-CHHHHHHHHHHhhhhhcC
Confidence 35677888999999999999999999 999999999999999633
|
|
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.12 Score=63.33 Aligned_cols=142 Identities=18% Similarity=0.219 Sum_probs=104.1
Q ss_pred CCccCHHHHHHHHhccCCCCeeEEEEEEeeCCCChhhHHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCccccHHHHH
Q 000266 688 GPLLSIEEMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRVAVSSLLAV 767 (1760)
Q Consensus 688 sPiL~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~l~~al~~l~~~a~~av~~G~~iliLsDr~~~~~~~~ip~lLav 767 (1760)
.|.++.+++++|++...-.+-.+.+ + .-+.|..+++.|+..|++|..+-..-.-.+|++.++
T Consensus 197 ~~~~~~~~i~~l~~~~~~PvivKgv--------~----------~~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L 258 (344)
T cd02922 197 DPTLTWDDIKWLRKHTKLPIVLKGV--------Q----------TVEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVL 258 (344)
T ss_pred CCCCCHHHHHHHHHhcCCcEEEEcC--------C----------CHHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHH
Confidence 4778999999998743111111111 0 136778889999999999986532222357888888
Q ss_pred HHHHHHHHHcCCCCceeEEEeeCCCCcHHHHHHHHhcCcccc---cHHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Q 000266 768 GAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAI---CPYLATEAIWRLQVDGKIPPKASGEFHSKDELVKK 844 (1760)
Q Consensus 768 ~avh~~Li~~~~R~~~~lvvesge~re~Hh~a~L~GyGA~av---~Pyla~e~~~~~~~~~~~~~~~~~~~~~~~~~~~n 844 (1760)
-.++..+...+- ++-||+ +|-+|.--|++-.|-.||++| .|+|. .+.. ..++.+.+
T Consensus 259 ~~i~~~~~~~~~--~~~vi~-~GGIr~G~Dv~kalaLGA~aV~iG~~~l~-----~l~~-------------~G~~gv~~ 317 (344)
T cd02922 259 LEIRKHCPEVFD--KIEVYV-DGGVRRGTDVLKALCLGAKAVGLGRPFLY-----ALSA-------------YGEEGVEK 317 (344)
T ss_pred HHHHHHHHHhCC--CceEEE-eCCCCCHHHHHHHHHcCCCEEEECHHHHH-----HHhh-------------ccHHHHHH
Confidence 888887655543 577777 799999999999999999999 45554 1111 13678889
Q ss_pred HHHHHHHHHHHHHHhhchhhhhcc
Q 000266 845 YFKASNYGMMKVLAKMGISTLASY 868 (1760)
Q Consensus 845 y~~a~~~GllKvmsKMGIstl~SY 868 (1760)
+..-+.+.|..+|.-||.++|+.-
T Consensus 318 ~l~~l~~EL~~~m~l~G~~~i~~l 341 (344)
T cd02922 318 AIQILKDEIETTMRLLGVTSLDQL 341 (344)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHh
Confidence 999999999999999999998763
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >PRK07695 transcriptional regulator TenI; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.042 Score=61.74 Aligned_cols=96 Identities=14% Similarity=0.064 Sum_probs=61.0
Q ss_pred HHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCc
Q 000266 1145 YDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGR 1224 (1760)
Q Consensus 1145 ~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~r 1224 (1760)
.++|+..|+..|++.. ..+. .+..+.++|+|+|.+ |+-..|...+ ....+....+.++.+. -+
T Consensus 87 ~~~r~~~~~~~ig~s~---~s~e-~a~~a~~~Gadyi~~-g~v~~t~~k~-----~~~~~g~~~l~~~~~~-------~~ 149 (201)
T PRK07695 87 RSVREKFPYLHVGYSV---HSLE-EAIQAEKNGADYVVY-GHVFPTDCKK-----GVPARGLEELSDIARA-------LS 149 (201)
T ss_pred HHHHHhCCCCEEEEeC---CCHH-HHHHHHHcCCCEEEE-CCCCCCCCCC-----CCCCCCHHHHHHHHHh-------CC
Confidence 4455555667777742 1222 355688999999976 3322221111 1111112334444332 25
Q ss_pred eEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000266 1225 TILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1225 V~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
+||++.||| +..++..++.+||++|++|++++.
T Consensus 150 ipvia~GGI-~~~~~~~~~~~Ga~gvav~s~i~~ 182 (201)
T PRK07695 150 IPVIAIGGI-TPENTRDVLAAGVSGIAVMSGIFS 182 (201)
T ss_pred CCEEEEcCC-CHHHHHHHHHcCCCEEEEEHHHhc
Confidence 899999999 999999999999999999998764
|
|
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.038 Score=63.05 Aligned_cols=75 Identities=16% Similarity=0.119 Sum_probs=56.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCC-CCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHc
Q 000266 1167 GVIASGVVKGHADHVLISGHDG-GTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALL 1245 (1760)
Q Consensus 1167 g~iA~~aakaGAD~IvIsG~~G-GTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaL 1245 (1760)
-..+..+.+.|++.|++.+.+- |+ ..| |-...+.++.+.. .+||++.|||+|..|+.+++.+
T Consensus 149 ~e~~~~~~~~g~~~ii~~~~~~~g~---------~~G-~d~~~i~~l~~~~-------~ipvia~GGi~~~~di~~~~~~ 211 (233)
T PRK00748 149 EDLAKRFEDAGVKAIIYTDISRDGT---------LSG-PNVEATRELAAAV-------PIPVIASGGVSSLDDIKALKGL 211 (233)
T ss_pred HHHHHHHHhcCCCEEEEeeecCcCC---------cCC-CCHHHHHHHHHhC-------CCCEEEeCCCCCHHHHHHHHHc
Confidence 4567778899999877754321 22 124 3334566665542 4899999999999999999999
Q ss_pred C-CCccccchhHHH
Q 000266 1246 G-AEEFGFSTAPLI 1258 (1760)
Q Consensus 1246 G-AdaVg~GTa~L~ 1258 (1760)
| |++|.+|++++.
T Consensus 212 g~~~gv~vg~a~~~ 225 (233)
T PRK00748 212 GAVEGVIVGRALYE 225 (233)
T ss_pred CCccEEEEEHHHHc
Confidence 9 999999999875
|
|
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.055 Score=66.57 Aligned_cols=98 Identities=20% Similarity=0.159 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEccc-cCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccc---cCCCHHHHHHH
Q 000266 1136 SIEDLAQLIYDLKNANPGARISVKLVSE-AGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKN---AGLPWELGLAE 1211 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p~~pV~VKlv~~-~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~---~GlP~~~~Lae 1211 (1760)
.++-+.+.|..+|+. . |.||.-.. ......+..+.++|+|+|+|.|..- +..+ .+ +|. -|.+
T Consensus 117 ~p~l~~~ii~~vr~a--~--VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~--------~q~~~sg~~-~p~-~l~~ 182 (369)
T TIGR01304 117 KPELLGERIAEVRDS--G--VITAVRVSPQNAREIAPIVVKAGADLLVIQGTLV--------SAEHVSTSG-EPL-NLKE 182 (369)
T ss_pred ChHHHHHHHHHHHhc--c--eEEEEecCCcCHHHHHHHHHHCCCCEEEEeccch--------hhhccCCCC-CHH-HHHH
Confidence 456678889999886 2 66665332 2456778889999999999987520 0001 12 233 2444
Q ss_pred HHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000266 1212 THQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1212 v~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
..+.+ ++|||+ |++.|..|+.+++..|||+|.+|+.
T Consensus 183 ~i~~~-------~IPVI~-G~V~t~e~A~~~~~aGaDgV~~G~g 218 (369)
T TIGR01304 183 FIGEL-------DVPVIA-GGVNDYTTALHLMRTGAAGVIVGPG 218 (369)
T ss_pred HHHHC-------CCCEEE-eCCCCHHHHHHHHHcCCCEEEECCC
Confidence 43331 589998 9999999999999999999986653
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.22 Score=58.62 Aligned_cols=36 Identities=14% Similarity=0.041 Sum_probs=32.7
Q ss_pred ceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHh
Q 000266 1224 RTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITL 1260 (1760)
Q Consensus 1224 rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Al 1260 (1760)
++||++.+||+|+.||.+++.. ||+|.+||+++-.+
T Consensus 200 ~~pv~vGfGI~~~e~v~~~~~~-ADGviVGSaiv~~~ 235 (258)
T PRK13111 200 DLPVAVGFGISTPEQAAAIAAV-ADGVIVGSALVKII 235 (258)
T ss_pred CCcEEEEcccCCHHHHHHHHHh-CCEEEEcHHHHHHH
Confidence 5899999999999999999986 99999999988654
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.062 Score=62.73 Aligned_cols=77 Identities=14% Similarity=-0.001 Sum_probs=55.6
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHc
Q 000266 1166 VGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALL 1245 (1760)
Q Consensus 1166 vg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaL 1245 (1760)
....+..+.++|+|.|++++.+..+ . .-|.. ...+.++.+. ..+||++.|||++..|+.+++.+
T Consensus 157 ~~~~~~~l~~~G~~~iivt~i~~~g-~-------~~g~~-~~~~~~i~~~-------~~ipvia~GGi~s~~di~~~~~~ 220 (254)
T TIGR00735 157 AVEWAKEVEKLGAGEILLTSMDKDG-T-------KSGYD-LELTKAVSEA-------VKIPVIASGGAGKPEHFYEAFTK 220 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCcCccc-C-------CCCCC-HHHHHHHHHh-------CCCCEEEeCCCCCHHHHHHHHHc
Confidence 4456777899999999997653311 1 11222 2344444443 25899999999999999999999
Q ss_pred C-CCccccchhHHH
Q 000266 1246 G-AEEFGFSTAPLI 1258 (1760)
Q Consensus 1246 G-AdaVg~GTa~L~ 1258 (1760)
| |++|.+|+++..
T Consensus 221 g~~dgv~~g~a~~~ 234 (254)
T TIGR00735 221 GKADAALAASVFHY 234 (254)
T ss_pred CCcceeeEhHHHhC
Confidence 9 999999998543
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.049 Score=63.17 Aligned_cols=76 Identities=13% Similarity=0.015 Sum_probs=56.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHc-
Q 000266 1167 GVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALL- 1245 (1760)
Q Consensus 1167 g~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaL- 1245 (1760)
-..+..+.++|++.|++.+-+.-+ . ..|. -...+.++.+. ..+||+++|||+|..|+.++..+
T Consensus 149 ~~~~~~l~~~G~~~iiv~~~~~~g-~-------~~G~-d~~~i~~i~~~-------~~ipviasGGi~s~~D~~~l~~~~ 212 (241)
T PRK14024 149 WEVLERLDSAGCSRYVVTDVTKDG-T-------LTGP-NLELLREVCAR-------TDAPVVASGGVSSLDDLRALAELV 212 (241)
T ss_pred HHHHHHHHhcCCCEEEEEeecCCC-C-------ccCC-CHHHHHHHHhh-------CCCCEEEeCCCCCHHHHHHHhhhc
Confidence 356677889999999997653311 1 1242 23455666554 25899999999999999998765
Q ss_pred --CCCccccchhHHH
Q 000266 1246 --GAEEFGFSTAPLI 1258 (1760)
Q Consensus 1246 --GAdaVg~GTa~L~ 1258 (1760)
||++|.+|++++.
T Consensus 213 ~~GvdgV~igra~~~ 227 (241)
T PRK14024 213 PLGVEGAIVGKALYA 227 (241)
T ss_pred cCCccEEEEeHHHHc
Confidence 9999999998775
|
|
| >TIGR00126 deoC deoxyribose-phosphate aldolase | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.094 Score=60.03 Aligned_cols=99 Identities=22% Similarity=0.258 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccccC------HHHHHHHHHHcCCCEEEEe-cCCCCCCCCccccccccCCCHHHHH
Q 000266 1137 IEDLAQLIYDLKNANPGARISVKLVSEAG------VGVIASGVVKGHADHVLIS-GHDGGTGASRWTGIKNAGLPWELGL 1209 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~~G------vg~iA~~aakaGAD~IvIs-G~~GGTGas~~~si~~~GlP~~~~L 1209 (1760)
++.+.+.|..+++...+ +.+|.+-+.+ +...+..+.++|||+|..| |+. ..|+++ .-+
T Consensus 101 ~~~v~~ei~~i~~~~~g--~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~-~~gat~------------~dv 165 (211)
T TIGR00126 101 EEVVYDDIRAVVEACAG--VLLKVIIETGLLTDEEIRKACEICIDAGADFVKTSTGFG-AGGATV------------EDV 165 (211)
T ss_pred HHHHHHHHHHHHHHcCC--CeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCC-CCCCCH------------HHH
Confidence 34455556666655433 4455544333 2223445889999999885 553 222221 122
Q ss_pred HHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000266 1210 AETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1210 aev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
....+. ++++++|-++|||||..|+...+.+||+.+|..+.
T Consensus 166 ~~m~~~-----v~~~v~IKaaGGirt~~~a~~~i~aGa~riGts~~ 206 (211)
T TIGR00126 166 RLMRNT-----VGDTIGVKASGGVRTAEDAIAMIEAGASRIGASAG 206 (211)
T ss_pred HHHHHH-----hccCCeEEEeCCCCCHHHHHHHHHHhhHHhCcchH
Confidence 222333 33479999999999999999999999999887654
|
Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria. |
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.033 Score=73.66 Aligned_cols=104 Identities=27% Similarity=0.424 Sum_probs=83.6
Q ss_pred EEEEEecCccchhhhcCCCCcEEEEEe--------cCCchhh----cCCCCceEEEeCCCCCCCCCCccccchhhhhccC
Q 000266 1429 IHIKLTGSAGQSVGAFLCPGILLELEG--------DSNDYVG----KGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYGA 1496 (1760)
Q Consensus 1429 i~i~~~G~aGq~~Gaf~~~G~~i~v~G--------~A~DyvG----kgmsGG~IvV~g~~~~~~~~~~~~i~Gn~~~yGa 1496 (1760)
|+|+++|++-+++|-.| .|+.|+|.= +-|-.|| -|-.+|.+.++|-++.+|. +-|
T Consensus 1391 i~~~L~GdaNDYVGKgl-sGG~iVI~Ppk~s~fkpeEn~IiGNvclYGATsG~~f~~G~AgERFa------VRN------ 1457 (2142)
T KOG0399|consen 1391 ITLRLEGDANDYVGKGL-SGGKIVIYPPKASSFKPEENTIIGNVCLYGATSGDAFFRGVAGERFA------VRN------ 1457 (2142)
T ss_pred cEEEEeccccchhcccc-cCCeEEEeCCccCCCCcccceEEcceeeecccccceEEeccccceee------eec------
Confidence 67889999999999999 788988753 2244555 3789999999999777664 333
Q ss_pred cccEEEEecccccccccccCCcEEEEcC-CCccccccccCcEEEEeCCCCC
Q 000266 1497 TSGEAYFNGMAAERFCVRNSGARAVVEG-VGDHGCEYMTGGTVVVLGKTGR 1546 (1760)
Q Consensus 1497 tgG~i~v~G~aGeR~gvr~sG~~iVV~G-~Gd~~~eyMtgG~ivVlG~~G~ 1546 (1760)
+|-.+.|.|. |+..|.-|.||.+||=| +|-....-|+||...+|-.-+.
T Consensus 1458 SgA~aVVEg~-GDh~cEYMTGG~vVVLgk~grN~aAgmsGGiAY~ld~d~~ 1507 (2142)
T KOG0399|consen 1458 SGANAVVEGV-GDHGCEYMTGGRVVVLGKTGRNFAAGMSGGIAYLLDEDDD 1507 (2142)
T ss_pred cCceeeeeec-cCccceeecCCEEEEEcccchhhhhcccCceEEEEccccc
Confidence 5667888887 99999999999988877 5888888999999999977655
|
|
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.065 Score=65.85 Aligned_cols=104 Identities=13% Similarity=0.009 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhC-CCCceEEEEccc---c-----CH-----HHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCH
Q 000266 1140 LAQLIYDLKNAN-PGARISVKLVSE---A-----GV-----GVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPW 1205 (1760)
Q Consensus 1140 LaqlI~~Lk~~~-p~~pV~VKlv~~---~-----Gv-----g~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~ 1205 (1760)
+.++|..+|+.. ++.||.||+.+. . |. ..++..+.++|+|+|.|++. . ...+ ...|.++
T Consensus 197 ~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g--~-~~~~----~~~~~~~ 269 (361)
T cd04747 197 AAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTR--R-FWEP----EFEGSEL 269 (361)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCC--C-ccCC----CcCccch
Confidence 567888899886 467999999741 0 11 12445578899999998763 1 1111 1112222
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEcCCc------------------CCHHHHHHHHHcC-CCccccchhHHH
Q 000266 1206 ELGLAETHQTLVANDLRGRTILQTDGQL------------------KTGRDVAIAALLG-AEEFGFSTAPLI 1258 (1760)
Q Consensus 1206 ~~~Laev~q~L~~~glr~rV~LiadGGI------------------rtG~DVaKAlaLG-AdaVg~GTa~L~ 1258 (1760)
. ....+.+. .++||++.|+| +|..++-+++.-| ||.|++||+++.
T Consensus 270 ~-~~~~~k~~-------~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~ia 333 (361)
T cd04747 270 N-LAGWTKKL-------TGLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLS 333 (361)
T ss_pred h-HHHHHHHH-------cCCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHh
Confidence 1 12223332 25899999999 5999999999977 999999999886
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.073 Score=60.20 Aligned_cols=95 Identities=24% Similarity=0.258 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEccccC------HHHHHHHHHHcCCCEEEEe-cCCCCCCCCccccccccCCCHHHHHH
Q 000266 1138 EDLAQLIYDLKNANPGARISVKLVSEAG------VGVIASGVVKGHADHVLIS-GHDGGTGASRWTGIKNAGLPWELGLA 1210 (1760)
Q Consensus 1138 edLaqlI~~Lk~~~p~~pV~VKlv~~~G------vg~iA~~aakaGAD~IvIs-G~~GGTGas~~~si~~~GlP~~~~La 1210 (1760)
+.+.+.|..+++...+.| +|.+-+.+ +...+..+.++|||+|..+ |.. ..|++ ++....+.
T Consensus 101 ~~~~~ei~~v~~~~~g~~--lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~-~~~at---------~~~v~~~~ 168 (203)
T cd00959 101 EAVYEEIAAVVEACGGAP--LKVILETGLLTDEEIIKACEIAIEAGADFIKTSTGFG-PGGAT---------VEDVKLMK 168 (203)
T ss_pred HHHHHHHHHHHHhcCCCe--EEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCC-CCCCC---------HHHHHHHH
Confidence 344555666666543344 44443322 2334556899999999885 442 12221 12223333
Q ss_pred HHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCcccc
Q 000266 1211 ETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGF 1252 (1760)
Q Consensus 1211 ev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~ 1252 (1760)
++. +.+++|-++|||+|..++...+.+||+.+|.
T Consensus 169 ~~~--------~~~v~ik~aGGikt~~~~l~~~~~g~~riG~ 202 (203)
T cd00959 169 EAV--------GGRVGVKAAGGIRTLEDALAMIEAGATRIGT 202 (203)
T ss_pred HHh--------CCCceEEEeCCCCCHHHHHHHHHhChhhccC
Confidence 332 2479999999999999999999999999874
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.011 Score=70.22 Aligned_cols=145 Identities=21% Similarity=0.236 Sum_probs=98.2
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEccc-cCHHHHHHHHHHcCCCEEEEe------------------cCCCCC--CCCc
Q 000266 1136 SIEDLAQLIYDLKNANPGARISVKLVSE-AGVGVIASGVVKGHADHVLIS------------------GHDGGT--GASR 1194 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p~~pV~VKlv~~-~Gvg~iA~~aakaGAD~IvIs------------------G~~GGT--Gas~ 1194 (1760)
+++-+.+.-.|++... ..|++-|..++ .++-.+|..+.+.|+.+|... +.+|.+ |+-+
T Consensus 257 ~p~v~~EvC~Wi~A~~-~Ip~~~kmTPNitd~revar~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~sT~GG~S 335 (471)
T KOG1799|consen 257 CPIVDCEVCGWINAKA-TIPMVSKMTPNITDKREVARSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYSTPGGYS 335 (471)
T ss_pred ChhhhHHHhhhhhhcc-ccccccccCCCcccccccchhcCcccccchhhHhHHHHHhcccccccCCCcccccccCCCCcc
Confidence 3455567777887654 67888888763 456667777777777776431 112211 1111
Q ss_pred cccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCC
Q 000266 1195 WTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCP 1274 (1760)
Q Consensus 1195 ~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP 1274 (1760)
..++. | .+|+.+....... +..+|.+.|||-||.|.+..++||+.-|++.|+.|.-
T Consensus 336 ~~AvR----P--IAl~~V~~IA~~m---~~F~l~~~GGvEt~~~~~~Fil~Gs~~vQVCt~V~~~--------------- 391 (471)
T KOG1799|consen 336 YKAVR----P--IALAKVMNIAKMM---KEFSLSGIGGVETGYDAAEFILLGSNTVQVCTGVMMH--------------- 391 (471)
T ss_pred ccccc----h--HHHHHHHHHHHHh---hcCccccccCcccccchhhHhhcCCcHhhhhhHHHhc---------------
Confidence 12222 3 3555555443332 2578999999999999999999999999999987751
Q ss_pred CcccccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCC
Q 000266 1275 VGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRS 1325 (1760)
Q Consensus 1275 ~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~ 1325 (1760)
+.-+| ..+..||+.+|.+.|+.+|+|..|.+
T Consensus 392 ----------------~~~~V----~~~Ca~LK~~m~~~~~~ti~~~~G~S 422 (471)
T KOG1799|consen 392 ----------------GYGHV----KTLCAELKDFMKQHNFSTIEEFRGHS 422 (471)
T ss_pred ----------------CcchH----HHHHHHHHHHHHHcCchhhhhccCcc
Confidence 12333 34567999999999999999998876
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.059 Score=63.18 Aligned_cols=76 Identities=20% Similarity=0.041 Sum_probs=58.0
Q ss_pred HHHHHHHHHHcCCCEEEEecCCC-CCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHH-
Q 000266 1166 VGVIASGVVKGHADHVLISGHDG-GTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAA- 1243 (1760)
Q Consensus 1166 vg~iA~~aakaGAD~IvIsG~~G-GTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAl- 1243 (1760)
....+..+.+.|++.|++.+-+- ||. -| |-...+.++.+. .++|||++|||++..|+.+++
T Consensus 154 ~~e~~~~~~~~g~~~ii~~~i~~~G~~---------~G-~d~~~i~~~~~~-------~~ipvIasGGv~s~eD~~~l~~ 216 (258)
T PRK01033 154 PLELAKEYEALGAGEILLNSIDRDGTM---------KG-YDLELLKSFRNA-------LKIPLIALGGAGSLDDIVEAIL 216 (258)
T ss_pred HHHHHHHHHHcCCCEEEEEccCCCCCc---------CC-CCHHHHHHHHhh-------CCCCEEEeCCCCCHHHHHHHHH
Confidence 44667778899999999976533 221 23 233455555554 259999999999999999999
Q ss_pred HcCCCccccchhHHH
Q 000266 1244 LLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1244 aLGAdaVg~GTa~L~ 1258 (1760)
..|+++|.+|+++.+
T Consensus 217 ~~GvdgVivg~a~~~ 231 (258)
T PRK01033 217 NLGADAAAAGSLFVF 231 (258)
T ss_pred HCCCCEEEEcceeee
Confidence 899999999999876
|
|
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.048 Score=64.48 Aligned_cols=102 Identities=20% Similarity=0.150 Sum_probs=70.9
Q ss_pred HHHHHHHHHhCCCCceEEEEccccCHHHH--HHHHHHcCCCEEEEecCCCCCCCCcc---------------------c-
Q 000266 1141 AQLIYDLKNANPGARISVKLVSEAGVGVI--ASGVVKGHADHVLISGHDGGTGASRW---------------------T- 1196 (1760)
Q Consensus 1141 aqlI~~Lk~~~p~~pV~VKlv~~~Gvg~i--A~~aakaGAD~IvIsG~~GGTGas~~---------------------~- 1196 (1760)
.++++..|..+ +.|+.. |+.++ |..+.+.|||.|--.|- .|||.-.- +
T Consensus 110 d~~~~~~K~~f-~~~fma------d~~~l~EAlrai~~GadmI~Ttge-~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~ 181 (293)
T PRK04180 110 DEEYHIDKWDF-TVPFVC------GARNLGEALRRIAEGAAMIRTKGE-AGTGNVVEAVRHMRQINGEIRRLTSMSEDEL 181 (293)
T ss_pred HHHHHHHHHHc-CCCEEc------cCCCHHHHHHHHHCCCCeeeccCC-CCCccHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 36777888876 666633 33333 45688999999977776 56654311 0
Q ss_pred --cccccCCCHHHHHHHHHHHHHhCCCCCceEEE--EcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000266 1197 --GIKNAGLPWELGLAETHQTLVANDLRGRTILQ--TDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1197 --si~~~GlP~~~~Laev~q~L~~~glr~rV~Li--adGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
.-+..+.|+ ..|.++.+. .++||+ +.|||.|+.|+..++.+||++|.+|++++-
T Consensus 182 ~~~a~~~~~~~-elL~ei~~~-------~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~k 239 (293)
T PRK04180 182 YTAAKELQAPY-ELVKEVAEL-------GRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFK 239 (293)
T ss_pred HhhccccCCCH-HHHHHHHHh-------CCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhc
Confidence 011234443 456666654 258887 999999999999999999999999998764
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.056 Score=72.29 Aligned_cols=108 Identities=14% Similarity=0.076 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHhC-CCCceEEEEccc----cC--H---HHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCC-HHH
Q 000266 1139 DLAQLIYDLKNAN-PGARISVKLVSE----AG--V---GVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLP-WEL 1207 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~-p~~pV~VKlv~~----~G--v---g~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP-~~~ 1207 (1760)
-+.++|..+|+.. ++.||.||+.+. .| . -.+|..+.++|+|+|.|++ |++..... . ..+.. ...
T Consensus 603 ~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~--g~~~~~~~--~-~~~~~~~~~ 677 (765)
T PRK08255 603 YPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSS--GQVSKDEK--P-VYGRMYQTP 677 (765)
T ss_pred HHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCC--CCCCcCCC--C-CcCccccHH
Confidence 3567788888876 467999999752 12 1 1356678899999999985 33322110 0 11111 111
Q ss_pred HHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC-CCccccchhHHH
Q 000266 1208 GLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG-AEEFGFSTAPLI 1258 (1760)
Q Consensus 1208 ~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG-AdaVg~GTa~L~ 1258 (1760)
...++.+. .++||++.|+|.++.++-+++.-| ||.|+||+++|.
T Consensus 678 ~~~~ik~~-------~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~ 722 (765)
T PRK08255 678 FADRIRNE-------AGIATIAVGAISEADHVNSIIAAGRADLCALARPHLA 722 (765)
T ss_pred HHHHHHHH-------cCCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHh
Confidence 11222222 258999999999999999999987 999999999886
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.059 Score=62.54 Aligned_cols=77 Identities=19% Similarity=0.172 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHH
Q 000266 1165 GVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAAL 1244 (1760)
Q Consensus 1165 Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAla 1244 (1760)
.-..+|....+.|||-|.|---++-.|. + +-...+.++.+.+ .+||+++|||+|-+|+-+++.
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~g~---------~-~n~~~i~~i~~~~-------~~pv~vgGGirs~edv~~~l~ 95 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAFGR---------G-SNRELLAEVVGKL-------DVKVELSGGIRDDESLEAALA 95 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccCCC---------C-ccHHHHHHHHHHc-------CCCEEEcCCCCCHHHHHHHHH
Confidence 3446778888899998765322221111 1 2234556665542 489999999999999999999
Q ss_pred cCCCccccchhHHH
Q 000266 1245 LGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1245 LGAdaVg~GTa~L~ 1258 (1760)
+||+.|.+||+.+-
T Consensus 96 ~Ga~kvviGs~~l~ 109 (241)
T PRK14024 96 TGCARVNIGTAALE 109 (241)
T ss_pred CCCCEEEECchHhC
Confidence 99999999998664
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.059 Score=62.93 Aligned_cols=78 Identities=18% Similarity=0.113 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHH
Q 000266 1165 GVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAAL 1244 (1760)
Q Consensus 1165 Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAla 1244 (1760)
....+|....+.|+|.|.+...++.... +-+-...+.++.+.. .+||+++|||++..|+.+++.
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~~~~---------~~~n~~~i~~i~~~~-------~~pv~~~GGi~s~~d~~~~~~ 94 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITASSEG---------RTTMIDVVERTAETV-------FIPLTVGGGIKSIEDVDKLLR 94 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCccccc---------ChhhHHHHHHHHHhc-------CCCEEEECCCCCHHHHHHHHH
Confidence 4556788888999999998766543100 112334455555542 589999999999999999999
Q ss_pred cCCCccccchhHHH
Q 000266 1245 LGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1245 LGAdaVg~GTa~L~ 1258 (1760)
+||+.|.+||+++-
T Consensus 95 ~Ga~~vivgt~~~~ 108 (254)
T TIGR00735 95 AGADKVSINTAAVK 108 (254)
T ss_pred cCCCEEEEChhHhh
Confidence 99999999998764
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.012 Score=75.86 Aligned_cols=56 Identities=25% Similarity=0.425 Sum_probs=48.1
Q ss_pred cccCccccccCCCCCCHHHHhcCchhhccCCCChhHHHHHHhhhcCCCC----CcccCCCCCC
Q 000266 1701 HRGFIAYEREGVQYRDPNIRMNDWKEVMEESKPGPLLKTQSARCMDCGT----PFCHQVCIAP 1759 (1760)
Q Consensus 1701 ~~gF~~~~R~~~~~r~~~~R~~Df~Ev~~~l~~~~~a~~QAaRCMdCG~----PfC~~~~gCP 1759 (1760)
...|-..+|..++.+++++|..+|+|+..++ +++++..|+.|||.|+. ..|.. .||
T Consensus 464 ~~~~~~~~r~~~~~~~~~~r~~~f~~~~~~~-~~~~~~~~~~rCl~C~~c~~C~~C~~--~Cp 523 (564)
T PRK12771 464 LWYFTDAPRAQRPELDADERVGDFDEVLGGL-TEEEARQEAARCLSCGNCFECDNCYG--ACP 523 (564)
T ss_pred ccccCcccccccccCCHHHHhcChhhhhccC-ChhhhhhhcccCcccccccccchhhh--hCC
Confidence 3556667899999999999999999999999 99999999999999953 33666 677
|
|
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.16 Score=56.57 Aligned_cols=100 Identities=16% Similarity=0.121 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEe-cCCCCCCCCccccccccCCCHHHHHHHHHHHH
Q 000266 1138 EDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLIS-GHDGGTGASRWTGIKNAGLPWELGLAETHQTL 1216 (1760)
Q Consensus 1138 edLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIs-G~~GGTGas~~~si~~~GlP~~~~Laev~q~L 1216 (1760)
+.+.+++..+|+. +.++++=+. ++....-+..+.+.|+|.|.+. +..+++.. +......+.++.+.
T Consensus 90 ~~~~~~i~~~~~~--g~~~~v~~~-~~~t~~e~~~~~~~~~d~v~~~~~~~~~~~~---------~~~~~~~i~~~~~~- 156 (202)
T cd04726 90 STIKKAVKAAKKY--GKEVQVDLI-GVEDPEKRAKLLKLGVDIVILHRGIDAQAAG---------GWWPEDDLKKVKKL- 156 (202)
T ss_pred HHHHHHHHHHHHc--CCeEEEEEe-CCCCHHHHHHHHHCCCCEEEEcCcccccccC---------CCCCHHHHHHHHhh-
Confidence 4566677777765 556655321 1222233334788899999883 33333311 11223444444432
Q ss_pred HhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHH
Q 000266 1217 VANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1217 ~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L 1257 (1760)
.+++++++|||+ ..++..++..||+.|.+|++++
T Consensus 157 ------~~~~i~~~GGI~-~~~i~~~~~~Gad~vvvGsai~ 190 (202)
T cd04726 157 ------LGVKVAVAGGIT-PDTLPEFKKAGADIVIVGRAIT 190 (202)
T ss_pred ------cCCCEEEECCcC-HHHHHHHHhcCCCEEEEeehhc
Confidence 258999999995 9999999999999999999853
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >PRK05283 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.13 Score=60.40 Aligned_cols=101 Identities=20% Similarity=0.182 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccccC-------HHHHHHHHHHcCCCEEEEe-cCCCCCCCCccccccccCCCHHHH
Q 000266 1137 IEDLAQLIYDLKNANPGARISVKLVSEAG-------VGVIASGVVKGHADHVLIS-GHDGGTGASRWTGIKNAGLPWELG 1208 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~~G-------vg~iA~~aakaGAD~IvIs-G~~GGTGas~~~si~~~GlP~~~~ 1208 (1760)
++.+.+.|..+++... .++.+|.+-+.+ +......+.++|||+|.-| |. ++.|++ ...
T Consensus 114 ~~~v~~ei~~v~~~~~-~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKTSTGf-~~~gAt------------~ed 179 (257)
T PRK05283 114 EQVGFELVKACKEACA-ANVLLKVIIETGELKDEALIRKASEIAIKAGADFIKTSTGK-VPVNAT------------LEA 179 (257)
T ss_pred HHHHHHHHHHHHHHhC-CCceEEEEEeccccCCHHHHHHHHHHHHHhCCCEEEcCCCC-CCCCCC------------HHH
Confidence 3455666677776642 246778776543 2223445889999999764 44 323332 223
Q ss_pred HHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccc
Q 000266 1209 LAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFG 1251 (1760)
Q Consensus 1209 Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg 1251 (1760)
+....+.+++.+..++|-|=++|||||..++...+.+|.+..|
T Consensus 180 v~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ag~~~lg 222 (257)
T PRK05283 180 ARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLALADEILG 222 (257)
T ss_pred HHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHHHHHHhC
Confidence 3334445444445568999999999999999999999987653
|
|
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.1 Score=64.22 Aligned_cols=187 Identities=19% Similarity=0.132 Sum_probs=110.4
Q ss_pred ccCCCCCCCCCCCCccccc-----cceEecCCCcccCcHHHHHHHHHHHHHcCCceeccCCCCCccccCcCCCCCCchhh
Q 000266 990 KEADVKIPLEEVEPASEIV-----KRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKR 1064 (1760)
Q Consensus 990 ~~~~~~i~~~eVe~~t~i~-----~Pf~i~aMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGge~~e~~~~~~~g~~~~~~ 1064 (1760)
.+.++.++.++||++..+- .||++++|..=+ +. .+|++++++|++...+..+.. .+.. + ..
T Consensus 24 vp~~~~~~~~dvdls~~~~~~~i~~Piv~a~M~gVt-~~----~la~avs~~GglGvl~~~gl~-~~~~---~-----~e 89 (368)
T PRK08649 24 VPSRRTRDPEDVSTSWQIDAYRFEIPIIASPMDAVV-SP----ETAIELGKLGGLGVLNLEGLW-TRYE---D-----PE 89 (368)
T ss_pred eCCCCCCCHHHceeeeeecceeccCcEeccCCcccC-CH----HHHHHHHhCCCceEEeecccc-ccCC---C-----HH
Confidence 3346788889999887653 399999997422 23 599999999998666522211 0110 0 01
Q ss_pred hheeecccCCcCCChhhhcCchhHHHhhhccCCCCCCCCCCCccchHHHHHHhCCCCcccccCCCCCCCCCCHHHHHHHH
Q 000266 1065 SAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLI 1144 (1760)
Q Consensus 1065 s~IkQvasgrFGVt~~~L~~a~~iqIKiaQGAKpGeGG~Lpg~KV~~~IA~~R~~~pG~~lisP~~hhDiySiedLaqlI 1144 (1760)
.+..|+.... . ++. ...++..+.. | .+++.+.++|
T Consensus 90 ~l~~qi~~~~----~-----~~~-------------------------~~~~~~~~~~-----P------~~p~l~~~iv 124 (368)
T PRK08649 90 PILDEIASLG----K-----DEA-------------------------TRLMQELYAE-----P------IKPELITERI 124 (368)
T ss_pred HHHHHHHhcC----c-----HHH-------------------------HHHHHHhhcC-----C------CCHHHHHHHH
Confidence 1223332110 0 000 1111111100 1 3466678899
Q ss_pred HHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCC--CHHHHHHHHHHHHHhCCCC
Q 000266 1145 YDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGL--PWELGLAETHQTLVANDLR 1222 (1760)
Q Consensus 1145 ~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~Gl--P~~~~Laev~q~L~~~glr 1222 (1760)
..+|.. .++|.+++.+ ......+..+.++|+|+|+|+|..--+ .|.+. -|.. +.+..+ +.
T Consensus 125 ~~~~~~--~V~v~vr~~~-~~~~e~a~~l~eaGvd~I~vhgrt~~~--------~h~~~~~~~~~-i~~~ik---~~--- 186 (368)
T PRK08649 125 AEIRDA--GVIVAVSLSP-QRAQELAPTVVEAGVDLFVIQGTVVSA--------EHVSKEGEPLN-LKEFIY---EL--- 186 (368)
T ss_pred HHHHhC--eEEEEEecCC-cCHHHHHHHHHHCCCCEEEEeccchhh--------hccCCcCCHHH-HHHHHH---HC---
Confidence 999885 4455555421 235567888999999999998742110 01110 1222 333322 21
Q ss_pred CceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000266 1223 GRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1223 ~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
+++||+ |++.|..++.+++.+|||+|.+|..
T Consensus 187 -~ipVIa-G~V~t~e~A~~l~~aGAD~V~VG~G 217 (368)
T PRK08649 187 -DVPVIV-GGCVTYTTALHLMRTGAAGVLVGIG 217 (368)
T ss_pred -CCCEEE-eCCCCHHHHHHHHHcCCCEEEECCC
Confidence 488998 9999999999999999999988864
|
|
| >PLN02411 12-oxophytodienoate reductase | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.17 Score=62.92 Aligned_cols=109 Identities=11% Similarity=0.047 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhCCCCceEEEEcccc-------C--H---HHHHHHHHHc------CCCEEEEecCCCCCCCCcccccccc
Q 000266 1140 LAQLIYDLKNANPGARISVKLVSEA-------G--V---GVIASGVVKG------HADHVLISGHDGGTGASRWTGIKNA 1201 (1760)
Q Consensus 1140 LaqlI~~Lk~~~p~~pV~VKlv~~~-------G--v---g~iA~~aaka------GAD~IvIsG~~GGTGas~~~si~~~ 1201 (1760)
+.++|..+|+..+.-.|+||+.+.. + + .+++..+.++ |+|+|.||...-. ....... ...
T Consensus 218 ~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~-~~~~~~~-~~~ 295 (391)
T PLN02411 218 LMQVVQAVVSAIGADRVGVRVSPAIDHLDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYT-AYGQTES-GRH 295 (391)
T ss_pred HHHHHHHHHHHcCCCeEEEEEcccccccCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCccc-ccCCCcc-ccc
Confidence 4577888888875446999997521 1 1 1234444442 5999999863210 0000000 011
Q ss_pred CCC-H-HHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC-CCccccchhHHH
Q 000266 1202 GLP-W-ELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG-AEEFGFSTAPLI 1258 (1760)
Q Consensus 1202 GlP-~-~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG-AdaVg~GTa~L~ 1258 (1760)
+.+ + .....++.+. .++||++.|+| +..+..+++.-| ||.|+||++++.
T Consensus 296 ~~~~~~~~~a~~ik~~-------v~~pvi~~G~i-~~~~a~~~l~~g~aDlV~~gR~~ia 347 (391)
T PLN02411 296 GSEEEEAQLMRTLRRA-------YQGTFMCSGGF-TRELGMQAVQQGDADLVSYGRLFIS 347 (391)
T ss_pred CCccchhHHHHHHHHH-------cCCCEEEECCC-CHHHHHHHHHcCCCCEEEECHHHHh
Confidence 111 1 1111223332 15799999999 678888889889 999999999887
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.077 Score=61.24 Aligned_cols=77 Identities=13% Similarity=0.095 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHcCCCEEEEecCCC-CCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHH
Q 000266 1165 GVGVIASGVVKGHADHVLISGHDG-GTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAA 1243 (1760)
Q Consensus 1165 Gvg~iA~~aakaGAD~IvIsG~~G-GTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAl 1243 (1760)
....+|..+.++|+|.|++..-++ +++. + +-...+.++.+. + ++||+++|||++..|+.+.+
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~~---------~-~~~~~i~~i~~~-----~--~~pv~~~GGI~s~~d~~~~l 90 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEGR---------E-TMLDVVERVAEE-----V--FIPLTVGGGIRSLEDARRLL 90 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcccccC---------c-ccHHHHHHHHHh-----C--CCCEEEeCCCCCHHHHHHHH
Confidence 455678889999999887755543 2211 1 222344444443 1 48999999999999999999
Q ss_pred HcCCCccccchhHHH
Q 000266 1244 LLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1244 aLGAdaVg~GTa~L~ 1258 (1760)
..||+.|.+|++++.
T Consensus 91 ~~G~~~v~ig~~~~~ 105 (243)
T cd04731 91 RAGADKVSINSAAVE 105 (243)
T ss_pred HcCCceEEECchhhh
Confidence 999999999997664
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.091 Score=61.21 Aligned_cols=77 Identities=13% Similarity=0.113 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHcCCCEEEEecCCC-CCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHH
Q 000266 1165 GVGVIASGVVKGHADHVLISGHDG-GTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAA 1243 (1760)
Q Consensus 1165 Gvg~iA~~aakaGAD~IvIsG~~G-GTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAl 1243 (1760)
....+|..+.++|||.|.|-.-++ +++. + +-...+.++.+.. ++||+++|||+|..|+.+++
T Consensus 31 d~~~~a~~~~~~G~~~i~i~dl~~~~~~~---------~-~~~~~i~~i~~~~-------~ipv~~~GGi~s~~~~~~~l 93 (253)
T PRK02083 31 DPVELAKRYNEEGADELVFLDITASSEGR---------D-TMLDVVERVAEQV-------FIPLTVGGGIRSVEDARRLL 93 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcccccC---------c-chHHHHHHHHHhC-------CCCEEeeCCCCCHHHHHHHH
Confidence 445678888899999999977654 2211 1 2234555555441 58999999999999999999
Q ss_pred HcCCCccccchhHHH
Q 000266 1244 LLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1244 aLGAdaVg~GTa~L~ 1258 (1760)
..||+.|.+||.++.
T Consensus 94 ~~Ga~~Viigt~~l~ 108 (253)
T PRK02083 94 RAGADKVSINSAAVA 108 (253)
T ss_pred HcCCCEEEEChhHhh
Confidence 999999999998665
|
|
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.23 Score=55.73 Aligned_cols=101 Identities=15% Similarity=0.081 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEe-cCCCCCCCCccccccccCCCHHHHHHHHHHHH
Q 000266 1138 EDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLIS-GHDGGTGASRWTGIKNAGLPWELGLAETHQTL 1216 (1760)
Q Consensus 1138 edLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIs-G~~GGTGas~~~si~~~GlP~~~~Laev~q~L 1216 (1760)
..+.+++...++. +.++.+-+....-....+..+.+.|+|+|.+. |..|. .++.++...+.+..+.+
T Consensus 89 ~~~~~~i~~~~~~--g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~~~~----------~~~~~~~~~i~~l~~~~ 156 (206)
T TIGR03128 89 ATIKGAVKAAKKH--GKEVQVDLINVKDKVKRAKELKELGADYIGVHTGLDEQ----------AKGQNPFEDLQTILKLV 156 (206)
T ss_pred HHHHHHHHHHHHc--CCEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCcCcc----------cCCCCCHHHHHHHHHhc
Confidence 3456777777775 67777764321112234455778899999874 22211 11222333445554442
Q ss_pred HhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHH
Q 000266 1217 VANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1217 ~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L 1257 (1760)
..+++.++||| +...+...+..||+.|.+|++++
T Consensus 157 ------~~~~i~v~GGI-~~~n~~~~~~~Ga~~v~vGsai~ 190 (206)
T TIGR03128 157 ------KEARVAVAGGI-NLDTIPDVIKLGPDIVIVGGAIT 190 (206)
T ss_pred ------CCCcEEEECCc-CHHHHHHHHHcCCCEEEEeehhc
Confidence 24678889999 88889999999999999999854
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside [] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.038 Score=67.19 Aligned_cols=111 Identities=16% Similarity=0.113 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhC-CCCceEEEEcccc----CHH--H---HHHHHHHcCCCEEEEecCCCCCCCCccccccccCC--CHH-
Q 000266 1140 LAQLIYDLKNAN-PGARISVKLVSEA----GVG--V---IASGVVKGHADHVLISGHDGGTGASRWTGIKNAGL--PWE- 1206 (1760)
Q Consensus 1140 LaqlI~~Lk~~~-p~~pV~VKlv~~~----Gvg--~---iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~Gl--P~~- 1206 (1760)
+.++|+.+|+.. ++.||.||+.+.- |.. . ++..+.++|+|++.+++...- +.+.......... .+.
T Consensus 202 ~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 280 (341)
T PF00724_consen 202 LLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITLEETIEIAKLLEELGVDFLDVSHGSYV-HWSEPRPSPPFDFEPGYNL 280 (341)
T ss_dssp HHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHSHHHHHHHHHHHHHHHTTEEEEEESEE-EEEBTSSTTTTTTTTTTTH
T ss_pred HHHHHHHHHHHhcCCceEEEEEeeecccCCCCchHHHHHHHHHHHHHhhhhccccccccc-cccccccccccccccchhh
Confidence 456778888775 4667999997631 221 1 355577889999877643221 1111000111111 111
Q ss_pred HHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC-CCccccchhHHH
Q 000266 1207 LGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG-AEEFGFSTAPLI 1258 (1760)
Q Consensus 1207 ~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG-AdaVg~GTa~L~ 1258 (1760)
.....+.+.. ++||++.|||.+...+.++++-| ||.|+||+++|.
T Consensus 281 ~~a~~ik~~~-------~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~la 326 (341)
T PF00724_consen 281 DLAEAIKKAV-------KIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLA 326 (341)
T ss_dssp HHHHHHHHHH-------SSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH
T ss_pred hhhhhhhhhc-------CceEEEEeeecchhhhHHHHhcCCceEeeccHHHHh
Confidence 1222222321 58999999999999999999999 999999999887
|
It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A .... |
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.22 Score=58.57 Aligned_cols=100 Identities=14% Similarity=0.066 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHH
Q 000266 1137 IEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTL 1216 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L 1216 (1760)
.+++.+++...+.. +.-+.|=+ ..... +..+.++|+|+|-+.+.+=.| .... .....+..+.
T Consensus 146 ~~~l~~li~~a~~l--Gl~~lvev---h~~~E-~~~A~~~gadiIgin~rdl~~----------~~~d-~~~~~~l~~~- 207 (260)
T PRK00278 146 DEQLKELLDYAHSL--GLDVLVEV---HDEEE-LERALKLGAPLIGINNRNLKT----------FEVD-LETTERLAPL- 207 (260)
T ss_pred HHHHHHHHHHHHHc--CCeEEEEe---CCHHH-HHHHHHcCCCEEEECCCCccc----------ccCC-HHHHHHHHHh-
Confidence 46778888887765 44444443 22333 355889999999875432111 1111 2223333332
Q ss_pred HhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000266 1217 VANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1217 ~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
+...+++++-|||.|..|+.+++.+||++|.+|+++|-
T Consensus 208 ----~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~ 245 (260)
T PRK00278 208 ----IPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMR 245 (260)
T ss_pred ----CCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcC
Confidence 22347899999999999999999999999999998775
|
|
| >PRK10605 N-ethylmaleimide reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.21 Score=61.57 Aligned_cols=101 Identities=10% Similarity=0.021 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhCCCCceEEEEccc-------cCH------HHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHH
Q 000266 1140 LAQLIYDLKNANPGARISVKLVSE-------AGV------GVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWE 1206 (1760)
Q Consensus 1140 LaqlI~~Lk~~~p~~pV~VKlv~~-------~Gv------g~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~ 1206 (1760)
+.++|+.+|+..+.-+|.||+.+. .|. ..++..+.++|+|+|.|+..+--+ ..+.+.
T Consensus 212 ~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~---------~~~~~~- 281 (362)
T PRK10605 212 VLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAG---------GEPYSD- 281 (362)
T ss_pred HHHHHHHHHHHcCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccC---------CccccH-
Confidence 456778888877555799998642 122 223456778999999998631100 001111
Q ss_pred HHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC-CCccccchhHHH
Q 000266 1207 LGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG-AEEFGFSTAPLI 1258 (1760)
Q Consensus 1207 ~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG-AdaVg~GTa~L~ 1258 (1760)
..-.++.+. ..+||++.|++ |...+.+++.-| ||.|+|||+++.
T Consensus 282 ~~~~~ik~~-------~~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~ia 326 (362)
T PRK10605 282 AFREKVRAR-------FHGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIA 326 (362)
T ss_pred HHHHHHHHH-------CCCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhh
Confidence 111222222 24789999997 999999999999 999999999887
|
|
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.21 Score=58.22 Aligned_cols=75 Identities=16% Similarity=0.005 Sum_probs=55.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCC-CCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHc
Q 000266 1167 GVIASGVVKGHADHVLISGHDG-GTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALL 1245 (1760)
Q Consensus 1167 g~iA~~aakaGAD~IvIsG~~G-GTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaL 1245 (1760)
-..+..+.++|++.|++...+- ||.. |.. ...+.++.+. ..+|||+.||+++..|+.+++..
T Consensus 156 ~~~~~~~~~~g~~~ii~~~i~~~g~~~---------g~d-~~~i~~~~~~-------~~ipvia~GGv~s~~d~~~~~~~ 218 (253)
T PRK02083 156 VEWAKEVEELGAGEILLTSMDRDGTKN---------GYD-LELTRAVSDA-------VNVPVIASGGAGNLEHFVEAFTE 218 (253)
T ss_pred HHHHHHHHHcCCCEEEEcCCcCCCCCC---------CcC-HHHHHHHHhh-------CCCCEEEECCCCCHHHHHHHHHh
Confidence 3455678899999999977542 3321 222 3455555554 25899999999999999999975
Q ss_pred -CCCccccchhHHH
Q 000266 1246 -GAEEFGFSTAPLI 1258 (1760)
Q Consensus 1246 -GAdaVg~GTa~L~ 1258 (1760)
||++|.+|+++..
T Consensus 219 ~G~~gvivg~al~~ 232 (253)
T PRK02083 219 GGADAALAASIFHF 232 (253)
T ss_pred CCccEEeEhHHHHc
Confidence 9999999998664
|
|
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.9 Score=53.49 Aligned_cols=49 Identities=14% Similarity=0.019 Sum_probs=38.9
Q ss_pred HHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHh
Q 000266 1209 LAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITL 1260 (1760)
Q Consensus 1209 Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Al 1260 (1760)
+.+..+.+++. .++||.+--||+|+.||.+++.+|||+|-+|++++-.+
T Consensus 177 ~~~~i~~vk~~---~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalVk~i 225 (250)
T PLN02591 177 VESLLQELKEV---TDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMVKAL 225 (250)
T ss_pred HHHHHHHHHhc---CCCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHHHhh
Confidence 34444444432 36899999999999999999999999999999987543
|
|
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.31 Score=56.75 Aligned_cols=108 Identities=11% Similarity=0.016 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHH
Q 000266 1137 IEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTL 1216 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L 1216 (1760)
+|++..++..+|+.. ...++=+.+.+....+ ..+.+...|+|.+-+..|+||... ........-+.++.+.
T Consensus 115 ~ee~~~~~~~~~~~g--~~~i~~i~P~T~~~~i-~~i~~~~~~~vy~~s~~g~tG~~~-----~~~~~~~~~i~~lr~~- 185 (242)
T cd04724 115 PEEAEEFREAAKEYG--LDLIFLVAPTTPDERI-KKIAELASGFIYYVSRTGVTGART-----ELPDDLKELIKRIRKY- 185 (242)
T ss_pred HHHHHHHHHHHHHcC--CcEEEEeCCCCCHHHH-HHHHhhCCCCEEEEeCCCCCCCcc-----CCChhHHHHHHHHHhc-
Confidence 477788888888873 3333333333333333 345565678777766667776532 1111222333333332
Q ss_pred HhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHh
Q 000266 1217 VANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITL 1260 (1760)
Q Consensus 1217 ~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Al 1260 (1760)
.++||+++|||++..++.++... ||+|-+|++++--+
T Consensus 186 ------~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv~~~ 222 (242)
T cd04724 186 ------TDLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALVKII 222 (242)
T ss_pred ------CCCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHHHHH
Confidence 26899999999999999999999 99999999887543
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.071 Score=65.20 Aligned_cols=95 Identities=20% Similarity=0.191 Sum_probs=67.2
Q ss_pred HhhccCccCCCCChHHHHHHHHHHHHHcCC---CHHHHHHHcCccccccCCCCCHHHHHHHHHHHhccCCCCCCcEEEec
Q 000266 383 MKKLLPIVDVSSSDSGAFDGVLELLVRAGR---SLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFT 459 (1760)
Q Consensus 383 l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~---sl~eAi~~~iPeaw~~~~~m~~e~rafYey~s~lmepwdGPa~iv~t 459 (1760)
++..+-. +.+.+|+|+++.++..+.+.|- ++..+++.++.-. ++ .+++.+| +||.+.+..
T Consensus 244 m~ar~~~-~~s~~~~e~~a~l~p~~~~~~sDs~~~dn~lE~l~~~G-----------~~--l~~a~~m---~~P~aw~~~ 306 (371)
T COG0067 244 LEARGYK-FESPTDGEVLAKLLPILMRGGSDSASLDNALELLLLGG-----------RD--LYHAAML---LGPEAWVVG 306 (371)
T ss_pred HHHhhcc-cccCccHHHHHHHHHHhcccCCcchhhhHHHHHHHhcC-----------cC--chhHHHh---cCchhhccC
Confidence 4444433 4789999999999997776552 3334444332110 00 3566777 999776643
Q ss_pred ---CCceEEEccCCCCCCCceEEEEeCCEEEEEeccccc
Q 000266 460 ---DGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVV 495 (1760)
Q Consensus 460 ---dG~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~gal 495 (1760)
+....++..|+.+|||. |.+..+..+..+||.+++
T Consensus 307 ~~~~~~~~afye~~~~l~ep-wdGpa~~~f~dgse~gA~ 344 (371)
T COG0067 307 TDMDPEGRAFYEDHSALMEP-WDGPADIVFTDGSEEGAI 344 (371)
T ss_pred CCCCcceEEEEehhhhCCCC-ccCCcceeEEeeeeeeee
Confidence 35667778999999999 999999999999999998
|
|
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.74 Score=57.18 Aligned_cols=140 Identities=18% Similarity=0.237 Sum_probs=103.1
Q ss_pred CCccCHHHHHHHHhccCCCCeeEEEEEEeeCCCChhhHHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCccccHHHHH
Q 000266 688 GPLLSIEEMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRVAVSSLLAV 767 (1760)
Q Consensus 688 sPiL~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~l~~al~~l~~~a~~av~~G~~iliLsDr~~~~~~~~ip~lLav 767 (1760)
.|-++++++++|++...-.+-.+-+ .. .+.|..|++.|+..|++|..+-....-.+|++.++
T Consensus 237 ~~~~tW~~i~~lr~~~~~pvivKgV----------~~--------~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L 298 (383)
T cd03332 237 GPSLTWEDLAFLREWTDLPIVLKGI----------LH--------PDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDAL 298 (383)
T ss_pred CCCCCHHHHHHHHHhcCCCEEEecC----------CC--------HHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHH
Confidence 5889999999999842111111111 00 15678889999999999976543334578888888
Q ss_pred HHHHHHHHHcCCCCceeEEEeeCCCCcHHHHHHHHhcCcccc---cHHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Q 000266 768 GAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAI---CPYLATEAIWRLQVDGKIPPKASGEFHSKDELVKK 844 (1760)
Q Consensus 768 ~avh~~Li~~~~R~~~~lvvesge~re~Hh~a~L~GyGA~av---~Pyla~e~~~~~~~~~~~~~~~~~~~~~~~~~~~n 844 (1760)
-.+...+- .++-||+ +|-+|.-.|++-.|-+||++| .|+|- .|.. ..++.+.+
T Consensus 299 ~ei~~~~~-----~~~~vi~-dGGIr~G~Dv~KALaLGA~~v~iGr~~l~-----~l~~-------------~G~~gv~~ 354 (383)
T cd03332 299 PEIVEAVG-----DRLTVLF-DSGVRTGADIMKALALGAKAVLIGRPYAY-----GLAL-------------GGEDGVEH 354 (383)
T ss_pred HHHHHHhc-----CCCeEEE-eCCcCcHHHHHHHHHcCCCEEEEcHHHHH-----HHHh-------------ccHHHHHH
Confidence 87776642 3577777 688999999999999999999 46652 1211 24678999
Q ss_pred HHHHHHHHHHHHHHhhchhhhhccc
Q 000266 845 YFKASNYGMMKVLAKMGISTLASYK 869 (1760)
Q Consensus 845 y~~a~~~GllKvmsKMGIstl~SY~ 869 (1760)
+++-+...|-..|.-+|+.+|..-+
T Consensus 355 ~l~~l~~El~~~m~l~G~~~i~~l~ 379 (383)
T cd03332 355 VLRNLLAELDLTMGLAGIRSIAELT 379 (383)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHhC
Confidence 9999999999999999999998743
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.33 Score=61.01 Aligned_cols=226 Identities=21% Similarity=0.265 Sum_probs=124.3
Q ss_pred ceEecCCCcccCcHHHHHHHHHHHHHcCC-ceeccCCCCCccccCcCCCCCCchhhhheeecccCC-cCCChhhhcCchh
Q 000266 1010 RFCTGAMSYGSISLEAHTTLATAMNKIGG-KSNTGEGGEQPSRMEPLSDGSMNPKRSAIKQVASGR-FGVSSYYLTNADE 1087 (1760)
Q Consensus 1010 Pf~i~aMS~Gsls~ea~~aLA~Aa~~~G~-~s~sGeGge~~e~~~~~~~g~~~~~~s~IkQvasgr-FGVt~~~L~~a~~ 1087 (1760)
|+++++|+=-...++ +..|+.++|- .-..|-|..++|.+. +...+..-++-+|+ +++|..|+. ...
T Consensus 36 PillaGMTPtTVdp~----ivAAaAnAGhwaELAGGGq~t~e~~~-------~~i~ql~~~lepG~t~qfN~ifld-pyl 103 (717)
T COG4981 36 PILLAGMTPTTVDPD----IVAAAANAGHWAELAGGGQVTEEIFT-------NAIEQLVSLLEPGRTAQFNSIFLD-PYL 103 (717)
T ss_pred CeeecCCCCCcCCHH----HHHHHhcCCceeeecCCcccCHHHHH-------HHHHHHHhccCCCccceeeEEEec-hHH
Confidence 999999997778884 4455556665 566676777877663 11223344444454 555655442 222
Q ss_pred HHHhhhccCCCCCCCCCCCccchHHHHHHhCCC---CcccccCCCCCCCCCCHHHHHHHHHHHHHhCCCCc-eEEEEccc
Q 000266 1088 LQIKMAQGAKPGEGGELPGHKVIGDIAVTRNST---AGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGAR-ISVKLVSE 1163 (1760)
Q Consensus 1088 iqIKiaQGAKpGeGG~Lpg~KV~~~IA~~R~~~---pG~~lisP~~hhDiySiedLaqlI~~Lk~~~p~~p-V~VKlv~~ 1163 (1760)
.+.. .++.+ .|.++|... .|+. |+. .|-|.|+-.++|.+|-.. +.| |.+|-
T Consensus 104 w~~q------------ig~kr---Lv~kara~G~~I~gvv-IsA----GIP~le~A~ElI~~L~~~--G~~yv~fKP--- 158 (717)
T COG4981 104 WKLQ------------IGGKR---LVQKARASGAPIDGVV-ISA----GIPSLEEAVELIEELGDD--GFPYVAFKP--- 158 (717)
T ss_pred hhhc------------CChHH---HHHHHHhcCCCcceEE-Eec----CCCcHHHHHHHHHHHhhc--CceeEEecC---
Confidence 2211 12222 233444322 1222 221 244567788899998554 222 44552
Q ss_pred cCHH-HH--HHHHHHcCCCE-E--EEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHH
Q 000266 1164 AGVG-VI--ASGVVKGHADH-V--LISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGR 1237 (1760)
Q Consensus 1164 ~Gvg-~i--A~~aakaGAD~-I--vIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~ 1237 (1760)
|.- .+ ....+|+.... | .+.|.-+|+|-| | .+.- ..|..++..|+. +++|.|++-|||-|++
T Consensus 159 -GtIeqI~svi~IAka~P~~pIilq~egGraGGHHS-w---eDld----~llL~tYs~lR~---~~NIvl~vGgGiGtp~ 226 (717)
T COG4981 159 -GTIEQIRSVIRIAKANPTFPIILQWEGGRAGGHHS-W---EDLD----DLLLATYSELRS---RDNIVLCVGGGIGTPD 226 (717)
T ss_pred -CcHHHHHHHHHHHhcCCCCceEEEEecCccCCccc-h---hhcc----cHHHHHHHHHhc---CCCEEEEecCCcCChh
Confidence 322 12 12355666554 3 334433444432 2 2222 223445555543 5689999999999999
Q ss_pred HHHHHH-----------HcCCCccccchhHHHHhcccc---cc-------------ccccCCCCCcccccChhh
Q 000266 1238 DVAIAA-----------LLGAEEFGFSTAPLITLGCIM---MR-------------KCHKNTCPVGIATQDPVL 1284 (1760)
Q Consensus 1238 DVaKAl-----------aLGAdaVg~GTa~L~Algc~~---~r-------------~ch~~~cP~giatqdp~L 1284 (1760)
|.+-.+ ++=-|++-+||++|++-...- .+ +-..+.-|.|++|-..+|
T Consensus 227 ~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMatKEatTSp~vK~~lv~t~Gvdd~~W~~~g~a~~Gm~s~rSqL 300 (717)
T COG4981 227 DAAPYLTGEWSTAYGFPPMPFDGILVGTAAMATKEATTSPAVKEALVATQGVDDDEWEGTGKAPGGMASVRSQL 300 (717)
T ss_pred hcccccccchhhhcCCCCCCcceeEechhHHhhhhccCCHHHHHHHhhCCCCCchhceecCCCCCceeeehhhh
Confidence 998654 344689999999999854331 11 222355677777765443
|
|
| >PRK04302 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.29 Score=56.17 Aligned_cols=107 Identities=17% Similarity=0.159 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCC-CCCCCCccccccccCCCHHHHHHHHHHH
Q 000266 1137 IEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHD-GGTGASRWTGIKNAGLPWELGLAETHQT 1215 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~-GGTGas~~~si~~~GlP~~~~Laev~q~ 1215 (1760)
.+++.+++...+.. +..+++ .+ +-...+..+.+.+.|+|-+-... -||+... .. ++...+.++++.
T Consensus 100 ~~e~~~~v~~a~~~--Gl~~I~-~v---~~~~~~~~~~~~~~~~I~~~p~~~igt~~~~-----~~--~~~~~i~~~~~~ 166 (223)
T PRK04302 100 LADIEAVVERAKKL--GLESVV-CV---NNPETSAAAAALGPDYVAVEPPELIGTGIPV-----SK--AKPEVVEDAVEA 166 (223)
T ss_pred HHHHHHHHHHHHHC--CCeEEE-Ec---CCHHHHHHHhcCCCCEEEEeCccccccCCCC-----Cc--CCHHHHHHHHHH
Confidence 45677888888775 443333 22 22233445778899998764321 1332110 00 112346666666
Q ss_pred HHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000266 1216 LVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1216 L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
+++. ..++||++.|||++..++..++..|||+|.+|++++-
T Consensus 167 ir~~--~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~ 207 (223)
T PRK04302 167 VKKV--NPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVK 207 (223)
T ss_pred HHhc--cCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhC
Confidence 6542 2368999999999999999999999999999999875
|
|
| >PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.23 Score=62.34 Aligned_cols=151 Identities=19% Similarity=0.163 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHh
Q 000266 1139 DLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVA 1218 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~ 1218 (1760)
.+.+.+...|+. +.++++-+.+.......+..+.+.|+|+|.+. . |.++.. .+......|.++.+.
T Consensus 95 ~~~~~i~~a~~~--G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~-p-g~~~~~-------~~~~~~~~l~~l~~~--- 160 (430)
T PRK07028 95 TIEDAVRAARKY--GVRLMADLINVPDPVKRAVELEELGVDYINVH-V-GIDQQM-------LGKDPLELLKEVSEE--- 160 (430)
T ss_pred HHHHHHHHHHHc--CCEEEEEecCCCCHHHHHHHHHhcCCCEEEEE-e-ccchhh-------cCCChHHHHHHHHhh---
Confidence 356677777775 55666643332221233456788999999763 2 222111 111112334444332
Q ss_pred CCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcC-CCHHHHHH
Q 000266 1219 NDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFA-GEPEHVIN 1297 (1760)
Q Consensus 1219 ~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~-g~~e~V~n 1297 (1760)
-.+||+++||| +...+..++..||+.|.+|++++-+- -|...+ ..+++.+. ..+..+.+
T Consensus 161 ----~~iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~~~------------d~~~~~---~~l~~~i~~~~~~~~~~ 220 (430)
T PRK07028 161 ----VSIPIAVAGGL-DAETAAKAVAAGADIVIVGGNIIKSA------------DVTEAA---RKIREAIDSGKPVKIDK 220 (430)
T ss_pred ----CCCcEEEECCC-CHHHHHHHHHcCCCEEEEChHHcCCC------------CHHHHH---HHHHHHHhccCCccccc
Confidence 14899999999 68899999999999999999855310 011111 12333332 23455666
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhhcC
Q 000266 1298 FFFMLAEELREIMSQLGFRTITEMIG 1323 (1760)
Q Consensus 1298 ~~~~l~~ELr~~Ma~lG~~si~ELig 1323 (1760)
|...+..|+.+.++.+...++.|...
T Consensus 221 ~~~~~~~~~~~~l~~~~t~~i~d~l~ 246 (430)
T PRK07028 221 FKKSLDEEIREIFMQVSTPNISDAMH 246 (430)
T ss_pred cccCCCHHHHHHhcCCCCCcHHhhhh
Confidence 77777788888888888888877543
|
|
| >PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.35 Score=57.88 Aligned_cols=93 Identities=14% Similarity=0.130 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhCC-CCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHh
Q 000266 1140 LAQLIYDLKNANP-GARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVA 1218 (1760)
Q Consensus 1140 LaqlI~~Lk~~~p-~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~ 1218 (1760)
+.+.|..+|+..| ..+|.|-. ..-.-|..++++|||+|.+++. + ...|.++...+++
T Consensus 182 i~~av~~~r~~~~~~~~I~VEv----~tleea~eA~~~GaD~I~LDn~---------------~---~e~l~~av~~~~~ 239 (288)
T PRK07428 182 IGEAITRIRQRIPYPLTIEVET----ETLEQVQEALEYGADIIMLDNM---------------P---VDLMQQAVQLIRQ 239 (288)
T ss_pred HHHHHHHHHHhCCCCCEEEEEC----CCHHHHHHHHHcCCCEEEECCC---------------C---HHHHHHHHHHHHh
Confidence 6677888888765 34454442 3334556788999999999843 1 1456666665543
Q ss_pred CCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHH
Q 000266 1219 NDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1219 ~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L 1257 (1760)
. +.+++|.++||| |...+...++.|+|.+.+|+...
T Consensus 240 ~--~~~i~leAsGGI-t~~ni~~ya~tGvD~Isvgsl~~ 275 (288)
T PRK07428 240 Q--NPRVKIEASGNI-TLETIRAVAETGVDYISSSAPIT 275 (288)
T ss_pred c--CCCeEEEEECCC-CHHHHHHHHHcCCCEEEEchhhh
Confidence 2 357999999999 79999999999999999998644
|
|
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.35 Score=56.12 Aligned_cols=75 Identities=11% Similarity=0.026 Sum_probs=53.4
Q ss_pred HHHHHHHHHcCCCEEEEecCC-CCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHc
Q 000266 1167 GVIASGVVKGHADHVLISGHD-GGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALL 1245 (1760)
Q Consensus 1167 g~iA~~aakaGAD~IvIsG~~-GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaL 1245 (1760)
-..+..+.+.|+..|++.--+ -||.. | |-...+.++.+. ..+||++.||+++..|+.+++.+
T Consensus 151 ~~~~~~~~~~g~~~ii~tdi~~dGt~~---------G-~~~~li~~l~~~-------~~ipvi~~GGi~s~edi~~l~~~ 213 (234)
T PRK13587 151 FSFVRQLSDIPLGGIIYTDIAKDGKMS---------G-PNFELTGQLVKA-------TTIPVIASGGIRHQQDIQRLASL 213 (234)
T ss_pred HHHHHHHHHcCCCEEEEecccCcCCCC---------c-cCHHHHHHHHHh-------CCCCEEEeCCCCCHHHHHHHHHc
Confidence 445666788898887764332 23322 2 223345555443 25899999999999999999999
Q ss_pred CCCccccchhHHH
Q 000266 1246 GAEEFGFSTAPLI 1258 (1760)
Q Consensus 1246 GAdaVg~GTa~L~ 1258 (1760)
|+++|-+||++.-
T Consensus 214 G~~~vivG~a~~~ 226 (234)
T PRK13587 214 NVHAAIIGKAAHQ 226 (234)
T ss_pred CCCEEEEhHHHHh
Confidence 9999999998653
|
|
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.78 Score=56.45 Aligned_cols=142 Identities=20% Similarity=0.191 Sum_probs=96.1
Q ss_pred CCccCHHHHHHHHhccCCCCeeEEEEEEeeCCCChhhHHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCC-CCccccHHHH
Q 000266 688 GPLLSIEEMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSS-KRVAVSSLLA 766 (1760)
Q Consensus 688 sPiL~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~l~~al~~l~~~a~~av~~G~~iliLsDr~~~~-~~~~ip~lLa 766 (1760)
.|-++++++++|++.....+-.+ |.. --+.|..+++.|+..|++|..+-.. +..| +++-+
T Consensus 205 ~~~~~~~~l~~lr~~~~~PvivK----------gv~--------~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~-~~~~~ 265 (351)
T cd04737 205 KQKLSPADIEFIAKISGLPVIVK----------GIQ--------SPEDADVAINAGADGIWVSNHGGRQLDGGP-ASFDS 265 (351)
T ss_pred cCCCCHHHHHHHHHHhCCcEEEe----------cCC--------CHHHHHHHHHcCCCEEEEeCCCCccCCCCc-hHHHH
Confidence 35689999999987421111111 110 1167788889999999999764211 1222 23333
Q ss_pred HHHHHHHHHHcCCCCceeEEEeeCCCCcHHHHHHHHhcCccccc---HHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Q 000266 767 VGAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAIC---PYLATEAIWRLQVDGKIPPKASGEFHSKDELVK 843 (1760)
Q Consensus 767 v~avh~~Li~~~~R~~~~lvvesge~re~Hh~a~L~GyGA~av~---Pyla~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (1760)
+..|.++ ++.++-||+ +|.+|.--|++-.|-.||++|. |+|- . |.. ..++.+.
T Consensus 266 l~~i~~a-----~~~~i~vi~-dGGIr~g~Di~kaLalGA~~V~iGr~~l~-~----la~-------------~G~~gv~ 321 (351)
T cd04737 266 LPEIAEA-----VNHRVPIIF-DSGVRRGEHVFKALASGADAVAVGRPVLY-G----LAL-------------GGAQGVA 321 (351)
T ss_pred HHHHHHH-----hCCCCeEEE-ECCCCCHHHHHHHHHcCCCEEEECHHHHH-H----Hhh-------------chHHHHH
Confidence 4444333 345677777 6999999999999999999983 4432 2 111 2467788
Q ss_pred HHHHHHHHHHHHHHHhhchhhhhcccccc
Q 000266 844 KYFKASNYGMMKVLAKMGISTLASYKGAQ 872 (1760)
Q Consensus 844 ny~~a~~~GllKvmsKMGIstl~SY~gaq 872 (1760)
++.+-+.+.|...|.-+|+++|+.-++.+
T Consensus 322 ~~l~~l~~El~~~m~l~G~~~i~el~~~~ 350 (351)
T cd04737 322 SVLEHLNKELKIVMQLAGTRTIEDVKRTF 350 (351)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHhCCCC
Confidence 99999999999999999999999876543
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.26 Score=54.69 Aligned_cols=94 Identities=18% Similarity=0.248 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHhCCCCc-eEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHH
Q 000266 1139 DLAQLIYDLKNANPGAR-ISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLV 1217 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p~~p-V~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~ 1217 (1760)
++.+.+..+|+..|..+ |.|-.- --.-+..++++|+|+|.+|... | .-+.++.+.|.
T Consensus 65 ~i~~av~~~~~~~~~~~~I~VEv~----~~ee~~ea~~~g~d~I~lD~~~----------------~--~~~~~~v~~l~ 122 (169)
T PF01729_consen 65 GIEEAVKAARQAAPEKKKIEVEVE----NLEEAEEALEAGADIIMLDNMS----------------P--EDLKEAVEELR 122 (169)
T ss_dssp SHHHHHHHHHHHSTTTSEEEEEES----SHHHHHHHHHTT-SEEEEES-C----------------H--HHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCceEEEEcC----CHHHHHHHHHhCCCEEEecCcC----------------H--HHHHHHHHHHh
Confidence 36678888998888776 766542 2345677999999999999861 1 45677777666
Q ss_pred hCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHH
Q 000266 1218 ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1218 ~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L 1257 (1760)
..+ .++.|.++||| |...|......|+|.+++|+...
T Consensus 123 ~~~--~~v~ie~SGGI-~~~ni~~ya~~gvD~isvg~~~~ 159 (169)
T PF01729_consen 123 ELN--PRVKIEASGGI-TLENIAEYAKTGVDVISVGSLTH 159 (169)
T ss_dssp HHT--TTSEEEEESSS-STTTHHHHHHTT-SEEEECHHHH
T ss_pred hcC--CcEEEEEECCC-CHHHHHHHHhcCCCEEEcChhhc
Confidence 543 35999999999 67789999999999999998644
|
4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D .... |
| >PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.35 Score=57.87 Aligned_cols=93 Identities=18% Similarity=0.161 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHh
Q 000266 1139 DLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVA 1218 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~ 1218 (1760)
++.+.|.++|+..|..+|.|-. ..-.-|..++++|||+|.+|+.+ | .-+.++...++.
T Consensus 185 ~i~~ai~~~r~~~~~~kIeVEv----~tl~ea~eal~~gaDiI~LDnm~----------------~--e~vk~av~~~~~ 242 (289)
T PRK07896 185 SVVAALRAVRAAAPDLPCEVEV----DSLEQLDEVLAEGAELVLLDNFP----------------V--WQTQEAVQRRDA 242 (289)
T ss_pred cHHHHHHHHHHhCCCCCEEEEc----CCHHHHHHHHHcCCCEEEeCCCC----------------H--HHHHHHHHHHhc
Confidence 5677888999887777776654 33345667899999999999752 1 344555554443
Q ss_pred CCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhH
Q 000266 1219 NDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAP 1256 (1760)
Q Consensus 1219 ~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~ 1256 (1760)
. +.++.+.++||| |...|.....+|+|.+.+|...
T Consensus 243 ~--~~~v~ieaSGGI-~~~ni~~yA~tGvD~Is~galt 277 (289)
T PRK07896 243 R--APTVLLESSGGL-TLDTAAAYAETGVDYLAVGALT 277 (289)
T ss_pred c--CCCEEEEEECCC-CHHHHHHHHhcCCCEEEeChhh
Confidence 2 457999999999 7888999999999999999753
|
|
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.42 Score=55.40 Aligned_cols=75 Identities=17% Similarity=0.158 Sum_probs=52.8
Q ss_pred HHHHHHHHHHcCCCEEEEecCC-CCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHH
Q 000266 1166 VGVIASGVVKGHADHVLISGHD-GGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAAL 1244 (1760)
Q Consensus 1166 vg~iA~~aakaGAD~IvIsG~~-GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAla 1244 (1760)
....+....+. ++.|++.--+ -||+. | |-...+.++.+. ..+||++.|||++..|+.+++.
T Consensus 148 ~~~~~~~~~~~-~~~li~~di~~~G~~~---------g-~~~~~~~~i~~~-------~~ipvi~~GGi~s~edi~~l~~ 209 (233)
T cd04723 148 PEELLRRLAKW-PEELIVLDIDRVGSGQ---------G-PDLELLERLAAR-------ADIPVIAAGGVRSVEDLELLKK 209 (233)
T ss_pred HHHHHHHHHHh-CCeEEEEEcCccccCC---------C-cCHHHHHHHHHh-------cCCCEEEeCCCCCHHHHHHHHH
Confidence 44556667777 8877664332 23321 2 223445555543 2589999999999999999999
Q ss_pred cCCCccccchhHHH
Q 000266 1245 LGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1245 LGAdaVg~GTa~L~ 1258 (1760)
+||++|-+||++..
T Consensus 210 ~G~~~vivGsal~~ 223 (233)
T cd04723 210 LGASGALVASALHD 223 (233)
T ss_pred cCCCEEEEehHHHc
Confidence 99999999998654
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.43 Score=57.50 Aligned_cols=104 Identities=16% Similarity=0.144 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhCC-CCceEEEEcccc-CHHHHHHHHHHc---CCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHH
Q 000266 1139 DLAQLIYDLKNANP-GARISVKLVSEA-GVGVIASGVVKG---HADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETH 1213 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p-~~pV~VKlv~~~-Gvg~iA~~aaka---GAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~ 1213 (1760)
++.+.+...|+..| ..||.|-.-... .+ .-|..+.++ ++|+|.+|..++..|. ....+.++.
T Consensus 169 ~~~~A~~~~~~~~p~~~~i~vevdt~~~~v-~eal~~~~~~~~~~d~I~lDn~~~~~G~------------~~~~~~~~~ 235 (302)
T cd01571 169 DQVEAWKAFDETYPEDVPRIALIDTFNDEK-EEALKAAKALGDKLDGVRLDTPSSRRGV------------FRYLIREVR 235 (302)
T ss_pred hHHHHHHHHHHHCCCcCCeEEEEeecCcch-HHHHHHHHHhCCCCcEEEECCCCCCCCC------------HHHHHHHHH
Confidence 35667788888877 467766542211 12 223445555 5999999998654332 234567788
Q ss_pred HHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHH
Q 000266 1214 QTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1214 q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L 1257 (1760)
+.|...+. .++.|+++||| |...|.+....|+|.+++|+...
T Consensus 236 ~~l~~~g~-~~~~ieaSGgI-~~~~i~~~a~~gvD~isvGs~~~ 277 (302)
T cd01571 236 WALDIRGY-KHVKIFVSGGL-DEEDIKELEDVGVDAFGVGTAIS 277 (302)
T ss_pred HHHHhCCC-CCeEEEEeCCC-CHHHHHHHHHcCCCEEECCcccC
Confidence 88877654 46899999999 99999999999999999999654
|
Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. |
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.84 Score=56.39 Aligned_cols=140 Identities=17% Similarity=0.173 Sum_probs=99.0
Q ss_pred CCccCHHHHHHHHhccCCCCeeEEEEEEeeCCCChhhHHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCccccHHHHH
Q 000266 688 GPLLSIEEMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRVAVSSLLAV 767 (1760)
Q Consensus 688 sPiL~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~l~~al~~l~~~a~~av~~G~~iliLsDr~~~~~~~~ip~lLav 767 (1760)
.|-++++++++|++...-.+-.+-+ . --+.|..|++.|+..|++|-.+-..--..+|++-++
T Consensus 208 ~~~~tW~di~wlr~~~~~PiivKgV----------~--------~~~dA~~a~~~Gvd~I~VsnhGGrqld~~~~t~~~L 269 (367)
T PLN02493 208 DRTLSWKDVQWLQTITKLPILVKGV----------L--------TGEDARIAIQAGAAGIIVSNHGARQLDYVPATISAL 269 (367)
T ss_pred CCCCCHHHHHHHHhccCCCEEeecC----------C--------CHHHHHHHHHcCCCEEEECCCCCCCCCCchhHHHHH
Confidence 5789999999999853211111111 0 036778899999999999987544322334555555
Q ss_pred HHHHHHHHHcCCCCceeEEEeeCCCCcHHHHHHHHhcCcccc---cHHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Q 000266 768 GAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAI---CPYLATEAIWRLQVDGKIPPKASGEFHSKDELVKK 844 (1760)
Q Consensus 768 ~avh~~Li~~~~R~~~~lvvesge~re~Hh~a~L~GyGA~av---~Pyla~e~~~~~~~~~~~~~~~~~~~~~~~~~~~n 844 (1760)
-.+.+.+ ..++-|++ +|-+|.--|++-.|.+||++| .|+|--.. . ..++.+.+
T Consensus 270 ~ei~~av-----~~~~~vi~-dGGIr~G~Dv~KALALGA~aV~iGr~~l~~l~-----~-------------~G~~gv~~ 325 (367)
T PLN02493 270 EEVVKAT-----QGRIPVFL-DGGVRRGTDVFKALALGASGIFIGRPVVFSLA-----A-------------EGEAGVRK 325 (367)
T ss_pred HHHHHHh-----CCCCeEEE-eCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHH-----h-------------cCHHHHHH
Confidence 5554442 34577777 688999999999999999999 58773111 1 13456889
Q ss_pred HHHHHHHHHHHHHHhhchhhhhccc
Q 000266 845 YFKASNYGMMKVLAKMGISTLASYK 869 (1760)
Q Consensus 845 y~~a~~~GllKvmsKMGIstl~SY~ 869 (1760)
+.+.+..-|.-.|.-+|..++...+
T Consensus 326 ~l~~l~~el~~~m~l~G~~~i~~l~ 350 (367)
T PLN02493 326 VLQMLRDEFELTMALSGCRSLKEIS 350 (367)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHhC
Confidence 9999999999999999998888753
|
|
| >PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.4 Score=57.93 Aligned_cols=75 Identities=21% Similarity=0.200 Sum_probs=52.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC
Q 000266 1167 GVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG 1246 (1760)
Q Consensus 1167 g~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG 1246 (1760)
-..|+.++++|+-+|--=+..=|+|. |+.....|..+.+. .+|||++|+||.++.||++|+.||
T Consensus 208 ~~~a~~l~~~g~~avmPl~~pIGsg~---------gv~~p~~i~~~~e~-------~~vpVivdAGIg~~sda~~AmelG 271 (326)
T PRK11840 208 PIAAKRLEDAGAVAVMPLGAPIGSGL---------GIQNPYTIRLIVEG-------ATVPVLVDAGVGTASDAAVAMELG 271 (326)
T ss_pred HHHHHHHHhcCCEEEeeccccccCCC---------CCCCHHHHHHHHHc-------CCCcEEEeCCCCCHHHHHHHHHcC
Confidence 45678899999954433122112322 22233455555443 359999999999999999999999
Q ss_pred CCccccchhHH
Q 000266 1247 AEEFGFSTAPL 1257 (1760)
Q Consensus 1247 AdaVg~GTa~L 1257 (1760)
||+|.+.|+..
T Consensus 272 adgVL~nSaIa 282 (326)
T PRK11840 272 CDGVLMNTAIA 282 (326)
T ss_pred CCEEEEcceec
Confidence 99999999754
|
|
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.2 Score=56.22 Aligned_cols=75 Identities=19% Similarity=0.101 Sum_probs=49.9
Q ss_pred HHHHHHcCCCEEEEecCC-CCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCC
Q 000266 1170 ASGVVKGHADHVLISGHD-GGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAE 1248 (1760)
Q Consensus 1170 A~~aakaGAD~IvIsG~~-GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAd 1248 (1760)
+..+.+.|+|+|.++... ++++.. .........+.++.+.+ ..++|+++||| +..++..++.+||+
T Consensus 117 ~~~a~~~gaD~v~~~~~~~~~~~~~------~~~~~g~~~~~~~~~~~------~~~~v~a~GGI-~~~~i~~~~~~Ga~ 183 (212)
T PRK00043 117 AAAALAAGADYVGVGPIFPTPTKKD------AKAPQGLEGLREIRAAV------GDIPIVAIGGI-TPENAPEVLEAGAD 183 (212)
T ss_pred HHHHhHcCCCEEEECCccCCCCCCC------CCCCCCHHHHHHHHHhc------CCCCEEEECCc-CHHHHHHHHHcCCC
Confidence 455778999999886432 111110 00001133455554432 24999999999 79999999999999
Q ss_pred ccccchhHH
Q 000266 1249 EFGFSTAPL 1257 (1760)
Q Consensus 1249 aVg~GTa~L 1257 (1760)
+|.+|++++
T Consensus 184 gv~~gs~i~ 192 (212)
T PRK00043 184 GVAVVSAIT 192 (212)
T ss_pred EEEEeHHhh
Confidence 999999754
|
|
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.31 Score=55.77 Aligned_cols=77 Identities=14% Similarity=0.027 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHcCCCEEEEecCCCC-CCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHH
Q 000266 1165 GVGVIASGVVKGHADHVLISGHDGG-TGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAA 1243 (1760)
Q Consensus 1165 Gvg~iA~~aakaGAD~IvIsG~~GG-TGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAl 1243 (1760)
....+|....+.|+|.|.|..-+|- .|. .+-...+.++.+. ..+||+++|||++-.|+.+++
T Consensus 31 ~~~~~a~~~~~~g~~~i~v~dld~~~~g~----------~~~~~~i~~i~~~-------~~~pv~~~GGI~~~ed~~~~~ 93 (233)
T PRK00748 31 DPVAQAKAWEDQGAKWLHLVDLDGAKAGK----------PVNLELIEAIVKA-------VDIPVQVGGGIRSLETVEALL 93 (233)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccCC----------cccHHHHHHHHHH-------CCCCEEEcCCcCCHHHHHHHH
Confidence 4456777788899999987654331 111 1223445555443 158999999999999999999
Q ss_pred HcCCCccccchhHHH
Q 000266 1244 LLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1244 aLGAdaVg~GTa~L~ 1258 (1760)
.+||+.|.+|++.+-
T Consensus 94 ~~Ga~~vilg~~~l~ 108 (233)
T PRK00748 94 DAGVSRVIIGTAAVK 108 (233)
T ss_pred HcCCCEEEECchHHh
Confidence 999999999998664
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.28 Score=56.09 Aligned_cols=78 Identities=17% Similarity=0.131 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHH
Q 000266 1165 GVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAAL 1244 (1760)
Q Consensus 1165 Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAla 1244 (1760)
....+|....+.|+|.+.|..-++.-.. .+. -...+.++.+.. .+||+++|||++..|+.+++.
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~~--------~~~-~~~~i~~i~~~~-------~~pv~~~GgI~~~e~~~~~~~ 93 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKGG--------EPV-NLELIEEIVKAV-------GIPVQVGGGIRSLEDIERLLD 93 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCccccC--------CCC-CHHHHHHHHHhc-------CCCEEEeCCcCCHHHHHHHHH
Confidence 3346777788899999998755432100 111 123444444431 489999999999999999999
Q ss_pred cCCCccccchhHHH
Q 000266 1245 LGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1245 LGAdaVg~GTa~L~ 1258 (1760)
.|||.|.+|+..+-
T Consensus 94 ~Gad~vvigs~~l~ 107 (234)
T cd04732 94 LGVSRVIIGTAAVK 107 (234)
T ss_pred cCCCEEEECchHHh
Confidence 99999999998653
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.82 Score=52.78 Aligned_cols=106 Identities=18% Similarity=0.195 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHh
Q 000266 1139 DLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVA 1218 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~ 1218 (1760)
++...|..+|+. +...++-+-+.+.+..+..-+ + -+|.|++=+-+-|+|+-.+ + . ....-+.++.+.+.+
T Consensus 94 ~~~~~l~~ik~~--g~k~GlalnP~Tp~~~i~~~l-~-~~D~vlvMtV~PGfgGq~f--i-~---~~lekI~~l~~~~~~ 163 (220)
T PRK08883 94 HVDRTLQLIKEH--GCQAGVVLNPATPLHHLEYIM-D-KVDLILLMSVNPGFGGQSF--I-P---HTLDKLRAVRKMIDE 163 (220)
T ss_pred cHHHHHHHHHHc--CCcEEEEeCCCCCHHHHHHHH-H-hCCeEEEEEecCCCCCcee--c-H---hHHHHHHHHHHHHHh
Confidence 466778888887 566777776666665554332 2 5798888655555543221 1 1 123456666666554
Q ss_pred CCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHH
Q 000266 1219 NDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1219 ~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L 1257 (1760)
+++ .++|.+||||. ...+.+....|||.+.+|++++
T Consensus 164 ~~~--~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf 199 (220)
T PRK08883 164 SGR--DIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIF 199 (220)
T ss_pred cCC--CeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHh
Confidence 443 48999999998 8899999999999999999743
|
|
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=93.21 E-value=1 Score=49.36 Aligned_cols=100 Identities=24% Similarity=0.213 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHhC-CCCceEEEEcccc--CHHHHH---HHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHH
Q 000266 1137 IEDLAQLIYDLKNAN-PGARISVKLVSEA--GVGVIA---SGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLA 1210 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~-p~~pV~VKlv~~~--Gvg~iA---~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~La 1210 (1760)
.+.+.+.+.++.+.. ++.||.++..+.. ....+. ..+.+.|+|+|..+.....+ ......+.
T Consensus 96 ~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~------------~~~~~~~~ 163 (201)
T cd00945 96 WEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFGGG------------GATVEDVK 163 (201)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCC------------CCCHHHHH
Confidence 566777777777763 3789999986532 223333 33567999999886421111 11122334
Q ss_pred HHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccc
Q 000266 1211 ETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFS 1253 (1760)
Q Consensus 1211 ev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~G 1253 (1760)
++.+.. ..++++++.||+.+..++..++.+||+++.+|
T Consensus 164 ~i~~~~-----~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 164 LMKEAV-----GGRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred HHHHhc-----ccCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 443332 22578999999999999999999999999876
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=93.13 E-value=1.3 Score=54.72 Aligned_cols=141 Identities=18% Similarity=0.190 Sum_probs=98.5
Q ss_pred CCccCHHHHHHHHhccCCCCeeEEEEEEeeCCCChhhHHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCccccHHHHH
Q 000266 688 GPLLSIEEMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRVAVSSLLAV 767 (1760)
Q Consensus 688 sPiL~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~l~~al~~l~~~a~~av~~G~~iliLsDr~~~~~~~~ip~lLav 767 (1760)
.|-++++++++|++...-.+-.+-+ + --+.|..|++.|+..|++|-.+-..-...+|++-++
T Consensus 207 ~~~ltW~dl~wlr~~~~~PvivKgV----------------~--~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L 268 (366)
T PLN02979 207 DRTLSWKDVQWLQTITKLPILVKGV----------------L--TGEDARIAIQAGAAGIIVSNHGARQLDYVPATISAL 268 (366)
T ss_pred CCCCCHHHHHHHHhccCCCEEeecC----------------C--CHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHH
Confidence 5789999999999843211111111 0 136788899999999999987643322333555555
Q ss_pred HHHHHHHHHcCCCCceeEEEeeCCCCcHHHHHHHHhcCcccc---cHHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Q 000266 768 GAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAI---CPYLATEAIWRLQVDGKIPPKASGEFHSKDELVKK 844 (1760)
Q Consensus 768 ~avh~~Li~~~~R~~~~lvvesge~re~Hh~a~L~GyGA~av---~Pyla~e~~~~~~~~~~~~~~~~~~~~~~~~~~~n 844 (1760)
-.+.+.+ ..++.|++ +|-+|.--|++-.+-+||++| .|+|.-.. .. .++.+.+
T Consensus 269 ~ei~~~~-----~~~~~Vi~-dGGIr~G~Di~KALALGAdaV~iGrp~L~~la-----~~-------------G~~Gv~~ 324 (366)
T PLN02979 269 EEVVKAT-----QGRIPVFL-DGGVRRGTDVFKALALGASGIFIGRPVVFSLA-----AE-------------GEAGVRK 324 (366)
T ss_pred HHHHHHh-----CCCCeEEE-eCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHH-----hc-------------CHHHHHH
Confidence 5554442 23577777 688999999999999999999 57773111 11 2455788
Q ss_pred HHHHHHHHHHHHHHhhchhhhhcccc
Q 000266 845 YFKASNYGMMKVLAKMGISTLASYKG 870 (1760)
Q Consensus 845 y~~a~~~GllKvmsKMGIstl~SY~g 870 (1760)
+.+.+.+-|.-.|.-+|+++++.-+-
T Consensus 325 ~l~~l~~El~~~m~l~G~~~i~el~~ 350 (366)
T PLN02979 325 VLQMLRDEFELTMALSGCRSLKEISR 350 (366)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHhCh
Confidence 89999999999999999988887543
|
|
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.53 Score=54.37 Aligned_cols=75 Identities=15% Similarity=0.115 Sum_probs=53.2
Q ss_pred HHHHHHHHHHcCCCEEEEecCCC-CCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHH
Q 000266 1166 VGVIASGVVKGHADHVLISGHDG-GTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAAL 1244 (1760)
Q Consensus 1166 vg~iA~~aakaGAD~IvIsG~~G-GTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAla 1244 (1760)
....+..+.+.|+..|++..-+- ||. .|+. ...+.++.+.. ++|||++|||++-.|+..+..
T Consensus 149 ~~~~~~~~~~~g~~~ii~tdi~~dGt~---------~G~d-~~~~~~l~~~~-------~~~viasGGv~~~~Dl~~l~~ 211 (229)
T PF00977_consen 149 LEEFAKRLEELGAGEIILTDIDRDGTM---------QGPD-LELLKQLAEAV-------NIPVIASGGVRSLEDLRELKK 211 (229)
T ss_dssp HHHHHHHHHHTT-SEEEEEETTTTTTS---------SS---HHHHHHHHHHH-------SSEEEEESS--SHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEEEeeccccCCc---------CCCC-HHHHHHHHHHc-------CCCEEEecCCCCHHHHHHHHH
Confidence 55677789999999988864322 332 2333 34455555542 589999999999999999999
Q ss_pred cCCCccccchhHH
Q 000266 1245 LGAEEFGFSTAPL 1257 (1760)
Q Consensus 1245 LGAdaVg~GTa~L 1257 (1760)
+|+++|-+|+++.
T Consensus 212 ~G~~gvivg~al~ 224 (229)
T PF00977_consen 212 AGIDGVIVGSALH 224 (229)
T ss_dssp TTECEEEESHHHH
T ss_pred CCCcEEEEehHhh
Confidence 9999999999874
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=92.99 E-value=3 Score=49.61 Aligned_cols=109 Identities=12% Similarity=0.075 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHH
Q 000266 1137 IEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTL 1216 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L 1216 (1760)
+|+..+++..+++. +...+.=+.++.....+.. .++..-.+|-+-...|=||... -++ ..+.+..+.+
T Consensus 130 ~ee~~~~~~~~~~~--gi~~I~lv~PtT~~eri~~-i~~~a~gFIY~vS~~GvTG~~~-------~~~--~~~~~~i~~i 197 (263)
T CHL00200 130 YEESDYLISVCNLY--NIELILLIAPTSSKSRIQK-IARAAPGCIYLVSTTGVTGLKT-------ELD--KKLKKLIETI 197 (263)
T ss_pred HHHHHHHHHHHHHc--CCCEEEEECCCCCHHHHHH-HHHhCCCcEEEEcCCCCCCCCc-------ccc--HHHHHHHHHH
Confidence 46666777777776 3333333334444444433 3333333555422556565431 112 2344555554
Q ss_pred HhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHh
Q 000266 1217 VANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITL 1260 (1760)
Q Consensus 1217 ~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Al 1260 (1760)
++. -++||.+++||++..++.++...|||+|-+|++++-.+
T Consensus 198 r~~---t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv~~i 238 (263)
T CHL00200 198 KKM---TNKPIILGFGISTSEQIKQIKGWNINGIVIGSACVQIL 238 (263)
T ss_pred HHh---cCCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHHHHH
Confidence 442 25899999999999999999999999999999987643
|
|
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=92.82 E-value=1 Score=54.08 Aligned_cols=112 Identities=19% Similarity=0.238 Sum_probs=83.4
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHHHcCCCCceeEEEeeCCCCcHHHHHHHHhcCcccc---c
Q 000266 734 AEARDAIKEGYTLLVLSDRAFSSKRVAVSSLLAVGAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAI---C 810 (1760)
Q Consensus 734 ~~a~~av~~G~~iliLsDr~~~~~~~~ip~lLav~avh~~Li~~~~R~~~~lvvesge~re~Hh~a~L~GyGA~av---~ 810 (1760)
+.|..+.+.|+..|+++.+.-....-.+|.+-++..+.+.+ ..++-||. +|.+|+.-|++-.+-+|||+| -
T Consensus 184 ~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~-----~~~ipvia-~GGI~~~~d~~kal~lGAd~V~ig~ 257 (299)
T cd02809 184 EDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAV-----GGRIEVLL-DGGIRRGTDVLKALALGADAVLIGR 257 (299)
T ss_pred HHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHh-----cCCCeEEE-eCCCCCHHHHHHHHHcCCCEEEEcH
Confidence 45778889999999999864222223466777777766554 22566666 799999999999999999999 4
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhhhccc
Q 000266 811 PYLATEAIWRLQVDGKIPPKASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYK 869 (1760)
Q Consensus 811 Pyla~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~a~~~GllKvmsKMGIstl~SY~ 869 (1760)
|+|.-. + .. .++.+.+++.-+.+.|...|..+|+++|+..+
T Consensus 258 ~~l~~~-~----~~-------------g~~~v~~~i~~l~~el~~~m~~~G~~~i~~l~ 298 (299)
T cd02809 258 PFLYGL-A----AG-------------GEAGVAHVLEILRDELERAMALLGCASLADLD 298 (299)
T ss_pred HHHHHH-H----hc-------------CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhC
Confidence 655421 1 11 24678899999999999999999999998753
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.99 Score=55.54 Aligned_cols=115 Identities=14% Similarity=0.169 Sum_probs=83.8
Q ss_pred HHHHHHHHcCCcEEEEcCCCCC------------------CCCccccHHHHHHHHHHHHHHcCCCCceeEEEeeCCCCcH
Q 000266 734 AEARDAIKEGYTLLVLSDRAFS------------------SKRVAVSSLLAVGAVHHHLVKNLERTRIGLIVESAEPREV 795 (1760)
Q Consensus 734 ~~a~~av~~G~~iliLsDr~~~------------------~~~~~ip~lLav~avh~~Li~~~~R~~~~lvvesge~re~ 795 (1760)
+.|..+.+.|+..|++|-++-. .....+|.+-++-.+.+++ .++-||+ +|-+|+.
T Consensus 201 ~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~------~~ipvia-~GGI~~~ 273 (352)
T PRK05437 201 ETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLL------PDLPIIA-SGGIRNG 273 (352)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhc------CCCeEEE-ECCCCCH
Confidence 5566667789999999876410 0123566555555554442 4577777 8999999
Q ss_pred HHHHHHHhcCccccc---HHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhhhcccccc
Q 000266 796 HHFCTLVGFGADAIC---PYLATEAIWRLQVDGKIPPKASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQ 872 (1760)
Q Consensus 796 Hh~a~L~GyGA~av~---Pyla~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~a~~~GllKvmsKMGIstl~SY~gaq 872 (1760)
++++-.|-.|||+|. |+|- .+... ..+.+.||.+.+...|..+|..+|+++++..++..
T Consensus 274 ~dv~k~l~~GAd~v~ig~~~l~-----~~~~~-------------g~~~v~~~i~~~~~eL~~~m~~~G~~~i~eL~~~~ 335 (352)
T PRK05437 274 LDIAKALALGADAVGMAGPFLK-----AALEG-------------GEEAVIELIEQWIEELKIAMFLTGAKNIAELRKVP 335 (352)
T ss_pred HHHHHHHHcCCCEEEEhHHHHH-----HHHhc-------------cHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCCCC
Confidence 999999999999994 3332 22222 24678899999999999999999999999987776
Q ss_pred h
Q 000266 873 I 873 (1760)
Q Consensus 873 i 873 (1760)
+
T Consensus 336 ~ 336 (352)
T PRK05437 336 L 336 (352)
T ss_pred E
Confidence 4
|
|
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.82 Score=58.49 Aligned_cols=68 Identities=13% Similarity=0.125 Sum_probs=48.0
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCC
Q 000266 1168 VIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGA 1247 (1760)
Q Consensus 1168 ~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGA 1247 (1760)
..+..+.++|+|+|+++...|.. . -+...+.++.+.+ .+++|++ |++.|..++..++.+||
T Consensus 231 e~a~~L~~agvdvivvD~a~g~~----------~--~vl~~i~~i~~~~------p~~~vi~-g~v~t~e~a~~l~~aGa 291 (486)
T PRK05567 231 ERAEALVEAGVDVLVVDTAHGHS----------E--GVLDRVREIKAKY------PDVQIIA-GNVATAEAARALIEAGA 291 (486)
T ss_pred HHHHHHHHhCCCEEEEECCCCcc----------h--hHHHHHHHHHhhC------CCCCEEE-eccCCHHHHHHHHHcCC
Confidence 45677899999999998754321 0 1223344443321 2477777 99999999999999999
Q ss_pred Cccccch
Q 000266 1248 EEFGFST 1254 (1760)
Q Consensus 1248 daVg~GT 1254 (1760)
|+|.+|-
T Consensus 292 d~i~vg~ 298 (486)
T PRK05567 292 DAVKVGI 298 (486)
T ss_pred CEEEECC
Confidence 9997653
|
|
| >PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.62 Score=55.57 Aligned_cols=87 Identities=17% Similarity=0.216 Sum_probs=62.5
Q ss_pred HHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCC
Q 000266 1141 AQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVAND 1220 (1760)
Q Consensus 1141 aqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~g 1220 (1760)
..-+..+|+..|..+|.|=. .--.-+..++++|||+|.++.. + ...+.++.+.+
T Consensus 177 ~~av~~~r~~~~~~~I~VEv----~tleea~eA~~~gaD~I~LD~~---------------~---~e~l~~~v~~~---- 230 (277)
T PRK05742 177 AQAVAAAHRIAPGKPVEVEV----ESLDELRQALAAGADIVMLDEL---------------S---LDDMREAVRLT---- 230 (277)
T ss_pred HHHHHHHHHhCCCCeEEEEe----CCHHHHHHHHHcCCCEEEECCC---------------C---HHHHHHHHHHh----
Confidence 34467777776666665553 2234456688999999988532 1 23456665543
Q ss_pred CCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000266 1221 LRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1221 lr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
+.+++|.++||| |...+...+..|+|.+.+|..
T Consensus 231 -~~~i~leAsGGI-t~~ni~~~a~tGvD~Isvg~l 263 (277)
T PRK05742 231 -AGRAKLEASGGI-NESTLRVIAETGVDYISIGAM 263 (277)
T ss_pred -CCCCcEEEECCC-CHHHHHHHHHcCCCEEEEChh
Confidence 247999999999 799999999999999999974
|
|
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.55 Score=54.00 Aligned_cols=65 Identities=17% Similarity=0.014 Sum_probs=46.9
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCc--CCHHH----HHHHH
Q 000266 1170 ASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQL--KTGRD----VAIAA 1243 (1760)
Q Consensus 1170 A~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGI--rtG~D----VaKAl 1243 (1760)
+..+.++|||+|-+... + + ...+.++.+. ..+||++.||+ .|..| +..++
T Consensus 149 ~~~a~~~GaD~Ik~~~~-~-------------~---~~~~~~i~~~-------~~~pvv~~GG~~~~~~~~~l~~~~~~~ 204 (235)
T cd00958 149 ARIGAELGADIVKTKYT-G-------------D---AESFKEVVEG-------CPVPVVIAGGPKKDSEEEFLKMVYDAM 204 (235)
T ss_pred HHHHHHHCCCEEEecCC-C-------------C---HHHHHHHHhc-------CCCCEEEeCCCCCCCHHHHHHHHHHHH
Confidence 45588999999988421 1 1 2344555443 14788998987 67766 88889
Q ss_pred HcCCCccccchhHHH
Q 000266 1244 LLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1244 aLGAdaVg~GTa~L~ 1258 (1760)
.+||++|.+|+.++-
T Consensus 205 ~~Ga~gv~vg~~i~~ 219 (235)
T cd00958 205 EAGAAGVAVGRNIFQ 219 (235)
T ss_pred HcCCcEEEechhhhc
Confidence 999999999998774
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=92.68 E-value=1.5 Score=56.08 Aligned_cols=70 Identities=14% Similarity=0.111 Sum_probs=49.6
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHc
Q 000266 1166 VGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALL 1245 (1760)
Q Consensus 1166 vg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaL 1245 (1760)
+...+..+.++|+|.|+||...|.. ...+..+..+++.. .+++||+ |-+.|..++..++.+
T Consensus 226 ~~~ra~~Lv~aGVd~i~~D~a~g~~------------~~~~~~i~~i~~~~------~~~~vi~-g~~~t~~~~~~l~~~ 286 (475)
T TIGR01303 226 VGGKAKALLDAGVDVLVIDTAHGHQ------------VKMISAIKAVRALD------LGVPIVA-GNVVSAEGVRDLLEA 286 (475)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCc------------HHHHHHHHHHHHHC------CCCeEEE-eccCCHHHHHHHHHh
Confidence 3345677889999999999876431 11233344444331 2588888 779999999999999
Q ss_pred CCCccccch
Q 000266 1246 GAEEFGFST 1254 (1760)
Q Consensus 1246 GAdaVg~GT 1254 (1760)
|||.|-+|-
T Consensus 287 G~d~i~vg~ 295 (475)
T TIGR01303 287 GANIIKVGV 295 (475)
T ss_pred CCCEEEECC
Confidence 999876663
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.67 E-value=2.5 Score=50.13 Aligned_cols=112 Identities=16% Similarity=0.160 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEcc----ccCHHHHHHHHHHcCCCEEEEe---------------------------
Q 000266 1136 SIEDLAQLIYDLKNANPGARISVKLVS----EAGVGVIASGVVKGHADHVLIS--------------------------- 1184 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p~~pV~VKlv~----~~Gvg~iA~~aakaGAD~IvIs--------------------------- 1184 (1760)
++++..+++..+|+.+++.|+++=.-. ..|+......+.++|+|+++|-
T Consensus 77 t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaP 156 (265)
T COG0159 77 TLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAP 156 (265)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCC
Confidence 456777778888877777777664422 2366666666777777777651
Q ss_pred ---------------c------CCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHH
Q 000266 1185 ---------------G------HDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAA 1243 (1760)
Q Consensus 1185 ---------------G------~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAl 1243 (1760)
| ..|-||.. .+....+.+..+.+++. .++||.+-=||++..++.++.
T Consensus 157 tt~~~rl~~i~~~a~GFiY~vs~~GvTG~~---------~~~~~~~~~~v~~vr~~---~~~Pv~vGFGIs~~e~~~~v~ 224 (265)
T COG0159 157 TTPDERLKKIAEAASGFIYYVSRMGVTGAR---------NPVSADVKELVKRVRKY---TDVPVLVGFGISSPEQAAQVA 224 (265)
T ss_pred CCCHHHHHHHHHhCCCcEEEEecccccCCC---------cccchhHHHHHHHHHHh---cCCCeEEecCcCCHHHHHHHH
Confidence 1 12333332 12111244444444432 269999999999999999999
Q ss_pred HcCCCccccchhHHHHh
Q 000266 1244 LLGAEEFGFSTAPLITL 1260 (1760)
Q Consensus 1244 aLGAdaVg~GTa~L~Al 1260 (1760)
.. ||+|-+||++.-.+
T Consensus 225 ~~-ADGVIVGSAiV~~i 240 (265)
T COG0159 225 EA-ADGVIVGSAIVKII 240 (265)
T ss_pred Hh-CCeEEEcHHHHHHH
Confidence 99 99999999988654
|
|
| >PRK06096 molybdenum transport protein ModD; Provisional | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.69 Score=55.31 Aligned_cols=94 Identities=17% Similarity=0.125 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHH
Q 000266 1137 IEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTL 1216 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L 1216 (1760)
++.+.+.|..+|+..|..+|.|-. ..-.-|..++++|||+|.+|+.. ..-+.++.+.+
T Consensus 173 ~~~i~~av~~~r~~~~~~kIeVEv----~tleqa~ea~~agaDiI~LDn~~------------------~e~l~~av~~~ 230 (284)
T PRK06096 173 PQDWSGAINQLRRHAPEKKIVVEA----DTPKEAIAALRAQPDVLQLDKFS------------------PQQATEIAQIA 230 (284)
T ss_pred cccHHHHHHHHHHhCCCCCEEEEC----CCHHHHHHHHHcCCCEEEECCCC------------------HHHHHHHHHHh
Confidence 346788899999887776666653 33455677999999999997751 23456666655
Q ss_pred HhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000266 1217 VANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1217 ~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
... +.++.|-++||| |...+......|+|.+.+|..
T Consensus 231 ~~~--~~~~~leaSGGI-~~~ni~~yA~tGvD~Is~gal 266 (284)
T PRK06096 231 PSL--APHCTLSLAGGI-NLNTLKNYADCGIRLFITSAP 266 (284)
T ss_pred hcc--CCCeEEEEECCC-CHHHHHHHHhcCCCEEEECcc
Confidence 432 357899999999 788999999999999977753
|
|
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.48 E-value=2.5 Score=52.59 Aligned_cols=139 Identities=18% Similarity=0.227 Sum_probs=97.7
Q ss_pred CCccCHHHHHHHHhccCCCCeeEEEEEEeeCCCChhhHHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCccccHHHHH
Q 000266 688 GPLLSIEEMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRVAVSSLLAV 767 (1760)
Q Consensus 688 sPiL~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~l~~al~~l~~~a~~av~~G~~iliLsDr~~~~~~~~ip~lLav 767 (1760)
.|-|+++++++|++.-.-.+-.+.+ .. .+.|..+++.|+..|++|-.+-..-...+|++.++
T Consensus 229 ~~~ltW~di~~lr~~~~~pvivKgV---~s---------------~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L 290 (381)
T PRK11197 229 DPSISWKDLEWIRDFWDGPMVIKGI---LD---------------PEDARDAVRFGADGIVVSNHGGRQLDGVLSSARAL 290 (381)
T ss_pred CCCCCHHHHHHHHHhCCCCEEEEec---CC---------------HHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHH
Confidence 5889999999999853211222222 11 16788889999999999975432222345555555
Q ss_pred HHHHHHHHHcCCCCceeEEEeeCCCCcHHHHHHHHhcCcccc---cHHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Q 000266 768 GAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAI---CPYLATEAIWRLQVDGKIPPKASGEFHSKDELVKK 844 (1760)
Q Consensus 768 ~avh~~Li~~~~R~~~~lvvesge~re~Hh~a~L~GyGA~av---~Pyla~e~~~~~~~~~~~~~~~~~~~~~~~~~~~n 844 (1760)
..+...+ ..++-|++ +|-+|.--|++-.|.+||++| .|+|- .|.. ..++.+.+
T Consensus 291 ~~i~~a~-----~~~~~vi~-dGGIr~g~Di~KALaLGA~~V~iGr~~l~-----~la~-------------~G~~gv~~ 346 (381)
T PRK11197 291 PAIADAV-----KGDITILA-DSGIRNGLDVVRMIALGADTVLLGRAFVY-----ALAA-------------AGQAGVAN 346 (381)
T ss_pred HHHHHHh-----cCCCeEEe-eCCcCcHHHHHHHHHcCcCceeEhHHHHH-----HHHh-------------ccHHHHHH
Confidence 5554432 13466777 688999999999999999999 45543 1111 24678889
Q ss_pred HHHHHHHHHHHHHHhhchhhhhcc
Q 000266 845 YFKASNYGMMKVLAKMGISTLASY 868 (1760)
Q Consensus 845 y~~a~~~GllKvmsKMGIstl~SY 868 (1760)
++.-+..-|-..|.-+|+.++..-
T Consensus 347 ~l~~l~~El~~~m~l~G~~~i~el 370 (381)
T PRK11197 347 LLDLIEKEMRVAMTLTGAKSISEI 370 (381)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHh
Confidence 999999999999999999999884
|
|
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=92.31 E-value=2.1 Score=52.98 Aligned_cols=143 Identities=14% Similarity=0.194 Sum_probs=99.4
Q ss_pred CCccCHHHHHHHHhccCCCCeeEEEEEEeeCCCChhhHHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCccccHHHHH
Q 000266 688 GPLLSIEEMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRVAVSSLLAV 767 (1760)
Q Consensus 688 sPiL~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~l~~al~~l~~~a~~av~~G~~iliLsDr~~~~~~~~ip~lLav 767 (1760)
.|-++++++++|+..-.-.+-.+-+ .. -++|..|++.|+..|++|..+...-...+|++-++
T Consensus 207 ~~~~tW~~i~~lr~~~~~PvivKgV---~~---------------~~dA~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L 268 (364)
T PLN02535 207 DASLSWKDIEWLRSITNLPILIKGV---LT---------------REDAIKAVEVGVAGIIVSNHGARQLDYSPATISVL 268 (364)
T ss_pred CCCCCHHHHHHHHhccCCCEEEecC---CC---------------HHHHHHHHhcCCCEEEEeCCCcCCCCCChHHHHHH
Confidence 5778999999999842111111111 10 14588889999999999987543333456666666
Q ss_pred HHHHHHHHHcCCCCceeEEEeeCCCCcHHHHHHHHhcCcccc---cHHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Q 000266 768 GAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAI---CPYLATEAIWRLQVDGKIPPKASGEFHSKDELVKK 844 (1760)
Q Consensus 768 ~avh~~Li~~~~R~~~~lvvesge~re~Hh~a~L~GyGA~av---~Pyla~e~~~~~~~~~~~~~~~~~~~~~~~~~~~n 844 (1760)
-.+...+ ..++-||+ +|-+|.--|++-.|-+||++| .|+|-- +. ...++.+++
T Consensus 269 ~ev~~av-----~~~ipVi~-dGGIr~g~Dv~KALalGA~aV~vGr~~l~~-----l~-------------~~g~~gv~~ 324 (364)
T PLN02535 269 EEVVQAV-----GGRVPVLL-DGGVRRGTDVFKALALGAQAVLVGRPVIYG-----LA-------------AKGEDGVRK 324 (364)
T ss_pred HHHHHHH-----hcCCCEEe-eCCCCCHHHHHHHHHcCCCEEEECHHHHhh-----hh-------------hccHHHHHH
Confidence 6665443 22466777 688999999999999999999 466541 11 123566777
Q ss_pred HHHHHHHHHHHHHHhhchhhhhcccccc
Q 000266 845 YFKASNYGMMKVLAKMGISTLASYKGAQ 872 (1760)
Q Consensus 845 y~~a~~~GllKvmsKMGIstl~SY~gaq 872 (1760)
+++-+...|...|.-+|+.++..-++.-
T Consensus 325 ~l~~l~~el~~~m~l~G~~~i~el~~~~ 352 (364)
T PLN02535 325 VIEMLKDELEITMALSGCPSVKDITRSH 352 (364)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHhhhhh
Confidence 7878889999999999999999865543
|
|
| >cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.38 Score=52.68 Aligned_cols=75 Identities=17% Similarity=-0.063 Sum_probs=49.3
Q ss_pred HHHHHHHcCCCEEEEecC-CCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCC
Q 000266 1169 IASGVVKGHADHVLISGH-DGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGA 1247 (1760)
Q Consensus 1169 iA~~aakaGAD~IvIsG~-~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGA 1247 (1760)
.+..+.+.|+|+|.++.. .+.++.. . +.......+.++.+. .+++|+++||| +..++..++.+||
T Consensus 107 ~~~~~~~~g~d~i~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~-------~~~pv~a~GGi-~~~~i~~~~~~Ga 172 (196)
T cd00564 107 EALRAEELGADYVGFGPVFPTPTKPG----A--GPPLGLELLREIAEL-------VEIPVVAIGGI-TPENAAEVLAAGA 172 (196)
T ss_pred HHHHHhhcCCCEEEECCccCCCCCCC----C--CCCCCHHHHHHHHHh-------CCCCEEEECCC-CHHHHHHHHHcCC
Confidence 445678889999998643 2222111 0 001112334444332 25899999999 5799999999999
Q ss_pred CccccchhHH
Q 000266 1248 EEFGFSTAPL 1257 (1760)
Q Consensus 1248 daVg~GTa~L 1257 (1760)
++|.+|++++
T Consensus 173 ~~i~~g~~i~ 182 (196)
T cd00564 173 DGVAVISAIT 182 (196)
T ss_pred CEEEEehHhh
Confidence 9999999865
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. |
| >TIGR01334 modD putative molybdenum utilization protein ModD | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.83 Score=54.49 Aligned_cols=93 Identities=20% Similarity=0.178 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHH
Q 000266 1138 EDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLV 1217 (1760)
Q Consensus 1138 edLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~ 1217 (1760)
+.+.+.|..+|+..|..+|.|-. ..-.-|..++++|||+|.+++.. ..-+.++.+.++
T Consensus 173 ~~i~~av~~~r~~~~~~kIeVEv----~tleea~ea~~~GaDiI~lDn~~------------------~e~l~~~v~~l~ 230 (277)
T TIGR01334 173 FDWGGAIGRLKQTAPERKITVEA----DTIEQALTVLQASPDILQLDKFT------------------PQQLHHLHERLK 230 (277)
T ss_pred ccHHHHHHHHHHhCCCCCEEEEC----CCHHHHHHHHHcCcCEEEECCCC------------------HHHHHHHHHHHh
Confidence 46888999999987777776654 33455677899999999999641 234556666654
Q ss_pred hCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000266 1218 ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1218 ~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
. .+.++.|.++||| |...+......|+|.+.+|..
T Consensus 231 ~--~~~~~~leasGGI-~~~ni~~ya~~GvD~is~gal 265 (277)
T TIGR01334 231 F--FDHIPTLAAAGGI-NPENIADYIEAGIDLFITSAP 265 (277)
T ss_pred c--cCCCEEEEEECCC-CHHHHHHHHhcCCCEEEeCcc
Confidence 2 2357899999999 789999999999999988864
|
The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown. |
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.21 E-value=1.4 Score=55.84 Aligned_cols=67 Identities=18% Similarity=0.168 Sum_probs=48.2
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCC
Q 000266 1168 VIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGA 1247 (1760)
Q Consensus 1168 ~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGA 1247 (1760)
.-+..+.++|+|+|.|+-..|.+ . -+...+.++.+.. .+++|++ |.+.|..++..++.+||
T Consensus 227 ~r~~~L~~aG~d~I~vd~a~g~~--------~----~~~~~i~~i~~~~------~~~~vi~-G~v~t~~~a~~l~~aGa 287 (450)
T TIGR01302 227 ERAEALVKAGVDVIVIDSSHGHS--------I----YVIDSIKEIKKTY------PDLDIIA-GNVATAEQAKALIDAGA 287 (450)
T ss_pred HHHHHHHHhCCCEEEEECCCCcH--------h----HHHHHHHHHHHhC------CCCCEEE-EeCCCHHHHHHHHHhCC
Confidence 45667899999999998865422 0 1233344443321 2577777 99999999999999999
Q ss_pred Cccccc
Q 000266 1248 EEFGFS 1253 (1760)
Q Consensus 1248 daVg~G 1253 (1760)
|+|.+|
T Consensus 288 d~i~vg 293 (450)
T TIGR01302 288 DGLRVG 293 (450)
T ss_pred CEEEEC
Confidence 998765
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >PRK09016 quinolinate phosphoribosyltransferase; Validated | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.9 Score=54.59 Aligned_cols=89 Identities=16% Similarity=0.183 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHh
Q 000266 1139 DLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVA 1218 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~ 1218 (1760)
++.+.|..+|+..|..+|.|-. ..-.-|..++++|||+|.+|+.. | .-+.++.+.+
T Consensus 194 ~i~~av~~~r~~~~~~kIeVEv----~sleea~ea~~~gaDiI~LDn~s----------------~--e~~~~av~~~-- 249 (296)
T PRK09016 194 SIRQAVEKAFWLHPDVPVEVEV----ENLDELDQALKAGADIIMLDNFT----------------T--EQMREAVKRT-- 249 (296)
T ss_pred cHHHHHHHHHHhCCCCCEEEEe----CCHHHHHHHHHcCCCEEEeCCCC----------------h--HHHHHHHHhh--
Confidence 3667888898887777776654 33455677999999999999862 1 3445555542
Q ss_pred CCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000266 1219 NDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1219 ~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
+.++.|.++||| |...|......|+|.+.+|..
T Consensus 250 ---~~~~~ieaSGGI-~~~ni~~yA~tGVD~Is~gal 282 (296)
T PRK09016 250 ---NGRALLEVSGNV-TLETLREFAETGVDFISVGAL 282 (296)
T ss_pred ---cCCeEEEEECCC-CHHHHHHHHhcCCCEEEeCcc
Confidence 457999999999 678899999999999998874
|
|
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=92.11 E-value=1.5 Score=50.60 Aligned_cols=102 Identities=24% Similarity=0.233 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcC-CCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHh
Q 000266 1140 LAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGH-ADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVA 1218 (1760)
Q Consensus 1140 LaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaG-AD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~ 1218 (1760)
....+..++.. +..+.+=+.+..-. ..+....+.| +|.|.+-....|++. ..+. | .++..+.+. ++
T Consensus 104 ~~~~~~~i~~~--g~~iGls~~~~t~~-~~~~~~~~~~~~Dyi~~~~v~pg~~~------~~~~-~--~~~~~i~~~-~~ 170 (229)
T PLN02334 104 LHRLIQQIKSA--GMKAGVVLNPGTPV-EAVEPVVEKGLVDMVLVMSVEPGFGG------QSFI-P--SMMDKVRAL-RK 170 (229)
T ss_pred HHHHHHHHHHC--CCeEEEEECCCCCH-HHHHHHHhccCCCEEEEEEEecCCCc------cccC-H--HHHHHHHHH-HH
Confidence 44566667664 45555554322222 2233344443 999977433222211 1111 1 233333332 22
Q ss_pred CCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHH
Q 000266 1219 NDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1219 ~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L 1257 (1760)
+...++|.++||| |...+...+..||+.|.+|++.+
T Consensus 171 --~~~~~~I~a~GGI-~~e~i~~l~~aGad~vvvgsai~ 206 (229)
T PLN02334 171 --KYPELDIEVDGGV-GPSTIDKAAEAGANVIVAGSAVF 206 (229)
T ss_pred --hCCCCcEEEeCCC-CHHHHHHHHHcCCCEEEEChHHh
Confidence 1234789999999 79999999999999999999744
|
|
| >PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related | Back alignment and domain information |
|---|
Probab=92.03 E-value=3.5 Score=51.04 Aligned_cols=225 Identities=16% Similarity=0.134 Sum_probs=129.1
Q ss_pred CCHHHHHHhHHHHHhcccccccccCCCCCccccccCccchhHHHhh----hcccccCCCCCcccccceeeeeeeecCCCC
Q 000266 597 YTVEALEMLMLPMAKDGTEALGSMGNDAPLAVMSNREKLTFEYFKQ----MFAQVTNPPIDPIREKIVTSMECMIGPEGV 672 (1760)
Q Consensus 597 yt~E~~~~~l~pma~~g~E~igSMG~D~plA~ls~~~~~l~~yFkQ----~FAQVTNPPID~iRE~~vmSl~~~~G~~~n 672 (1760)
...+.+..+|.-.-+.|..++. -|.=.++++.+++.+-+-|.. ..+++.+...+|---.--+.-....++..+
T Consensus 120 ~d~~~~~~~i~rAe~aG~~Al~---vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 196 (356)
T PF01070_consen 120 RDRELTRDLIRRAEAAGAKALV---VTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDN 196 (356)
T ss_dssp SSHHHHHHHHHHHHHTTCSEEE---EETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTS
T ss_pred cCHHHHHHHHHHhhcCCCCEEE---EECcCcccCCcccccccccCCCcccccccccccccCcccccccccccccccCCCc
Confidence 3555555566665555655554 333344566777666666632 234455555555400000000001111111
Q ss_pred CCCCCcCccceE-EecCCccCHHHHHHHHhccCCCCeeEEEEEEeeCCCChhhHHHHHHHHHHHHHHHHHcCCcEEEEcC
Q 000266 673 LTETTEEQCHRL-SLKGPLLSIEEMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSD 751 (1760)
Q Consensus 673 ~l~~~~~~~~~l-~l~sPiL~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~l~~al~~l~~~a~~av~~G~~iliLsD 751 (1760)
. .....-. ....|-++++++++|++.-.-.+-.+-+ .. -+.|..+++.|+..|++|-
T Consensus 197 ~----~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv---~~---------------~~da~~~~~~G~~~i~vs~ 254 (356)
T PF01070_consen 197 G----AAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGV---LS---------------PEDAKRAVDAGVDGIDVSN 254 (356)
T ss_dssp T----CHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE----S---------------HHHHHHHHHTT-SEEEEES
T ss_pred c----hhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEec---cc---------------HHHHHHHHhcCCCEEEecC
Confidence 0 0000000 1125779999999998842211222222 22 1678889999999999998
Q ss_pred CCCCCCCccccHHHHHHHHHHHHHHcCCCCceeEEEeeCCCCcHHHHHHHHhcCcccc---cHHHHHHHHHHHHHcCCCC
Q 000266 752 RAFSSKRVAVSSLLAVGAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAI---CPYLATEAIWRLQVDGKIP 828 (1760)
Q Consensus 752 r~~~~~~~~ip~lLav~avh~~Li~~~~R~~~~lvvesge~re~Hh~a~L~GyGA~av---~Pyla~e~~~~~~~~~~~~ 828 (1760)
.+-..---.+|++-++-.+.+.+ ..++-|++ +|-+|.--|++-.|.+||++| .|+|-- |..
T Consensus 255 hGGr~~d~~~~~~~~L~~i~~~~-----~~~~~i~~-dgGir~g~Dv~kalaLGA~~v~igr~~l~~-----l~~----- 318 (356)
T PF01070_consen 255 HGGRQLDWGPPTIDALPEIRAAV-----GDDIPIIA-DGGIRRGLDVAKALALGADAVGIGRPFLYA-----LAA----- 318 (356)
T ss_dssp GTGTSSTTS-BHHHHHHHHHHHH-----TTSSEEEE-ESS--SHHHHHHHHHTT-SEEEESHHHHHH-----HHH-----
T ss_pred CCcccCccccccccccHHHHhhh-----cCCeeEEE-eCCCCCHHHHHHHHHcCCCeEEEccHHHHH-----HHH-----
Confidence 75444445577777777776654 26777888 688999999999999999999 566532 111
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhhhcccc
Q 000266 829 PKASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKG 870 (1760)
Q Consensus 829 ~~~~~~~~~~~~~~~ny~~a~~~GllKvmsKMGIstl~SY~g 870 (1760)
..++.+.++++-+...|...|.-+|+++|..-+.
T Consensus 319 --------~g~~gv~~~~~~l~~el~~~m~l~G~~~~~~l~~ 352 (356)
T PF01070_consen 319 --------GGEEGVERVLEILKEELKRAMFLLGARSIAELRR 352 (356)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHT-SBGGGHTG
T ss_pred --------hhHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCH
Confidence 2457788999999999999999999999988543
|
These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A .... |
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.51 Score=54.41 Aligned_cols=45 Identities=16% Similarity=0.087 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHH
Q 000266 1206 ELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1206 ~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L 1257 (1760)
...+.++.+. ..+||+++|||++..|+.++..+||++|-+|+++.
T Consensus 173 ~eli~~i~~~-------~~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~ 217 (221)
T TIGR00734 173 LELLTKTLEL-------SEHPVMLGGGISGVEDLELLKEMGVSAVLVATAVH 217 (221)
T ss_pred HHHHHHHHhh-------CCCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhh
Confidence 4455555554 25899999999999999999999999999999864
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=91.88 E-value=2.6 Score=49.97 Aligned_cols=111 Identities=15% Similarity=0.176 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEcc----ccCHHHHHHHHHHcCCCEEEEe----------------------------
Q 000266 1137 IEDLAQLIYDLKNANPGARISVKLVS----EAGVGVIASGVVKGHADHVLIS---------------------------- 1184 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~----~~Gvg~iA~~aakaGAD~IvIs---------------------------- 1184 (1760)
.+++.+++.++|..+++.||++=.-- .-|+......+.++|+|+++|=
T Consensus 71 ~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~ 150 (259)
T PF00290_consen 71 LEKIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPT 150 (259)
T ss_dssp HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETT
T ss_pred HHHHHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCC
Confidence 56666777777755567777654422 1355566666777777777651
Q ss_pred --------------------cCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHH
Q 000266 1185 --------------------GHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAAL 1244 (1760)
Q Consensus 1185 --------------------G~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAla 1244 (1760)
...|-||... .....+.+..+.+++.. ++||.+-=||+|+.++.+..
T Consensus 151 t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~---------~~~~~l~~~i~~ik~~~---~~Pv~vGFGI~~~e~~~~~~- 217 (259)
T PF00290_consen 151 TPEERIKKIAKQASGFIYLVSRMGVTGSRT---------ELPDELKEFIKRIKKHT---DLPVAVGFGISTPEQAKKLA- 217 (259)
T ss_dssp S-HHHHHHHHHH-SSEEEEESSSSSSSTTS---------SCHHHHHHHHHHHHHTT---SS-EEEESSS-SHHHHHHHH-
T ss_pred CCHHHHHHHHHhCCcEEEeeccCCCCCCcc---------cchHHHHHHHHHHHhhc---CcceEEecCCCCHHHHHHHH-
Confidence 1233333211 11234555555555532 69999999999999999988
Q ss_pred cCCCccccchhHHHHh
Q 000266 1245 LGAEEFGFSTAPLITL 1260 (1760)
Q Consensus 1245 LGAdaVg~GTa~L~Al 1260 (1760)
.|||+|-+|++++-.+
T Consensus 218 ~~aDGvIVGSa~v~~i 233 (259)
T PF00290_consen 218 AGADGVIVGSAFVKII 233 (259)
T ss_dssp TTSSEEEESHHHHHHH
T ss_pred ccCCEEEECHHHHHHH
Confidence 9999999999998754
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.35 Score=55.68 Aligned_cols=77 Identities=25% Similarity=0.202 Sum_probs=56.2
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHc
Q 000266 1166 VGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALL 1245 (1760)
Q Consensus 1166 vg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaL 1245 (1760)
-..+|+.+.++|+.+|-==|..=|+|- |+-....|..+.+. -+||||+|-||-++.|++.|+.|
T Consensus 140 D~v~arrLee~GcaavMPl~aPIGSg~---------G~~n~~~l~iiie~-------a~VPviVDAGiG~pSdAa~aMEl 203 (262)
T COG2022 140 DPVLARRLEEAGCAAVMPLGAPIGSGL---------GLQNPYNLEIIIEE-------ADVPVIVDAGIGTPSDAAQAMEL 203 (262)
T ss_pred CHHHHHHHHhcCceEeccccccccCCc---------CcCCHHHHHHHHHh-------CCCCEEEeCCCCChhHHHHHHhc
Confidence 346789999999999864443333322 33333445444433 27999999999999999999999
Q ss_pred CCCccccchhHHH
Q 000266 1246 GAEEFGFSTAPLI 1258 (1760)
Q Consensus 1246 GAdaVg~GTa~L~ 1258 (1760)
|+|+|-+-|+.-.
T Consensus 204 G~DaVL~NTAiA~ 216 (262)
T COG2022 204 GADAVLLNTAIAR 216 (262)
T ss_pred ccceeehhhHhhc
Confidence 9999999997443
|
|
| >cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=91.81 E-value=1 Score=53.49 Aligned_cols=88 Identities=19% Similarity=0.259 Sum_probs=61.9
Q ss_pred HHHHHHHHhCC-CCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCC
Q 000266 1142 QLIYDLKNANP-GARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVAND 1220 (1760)
Q Consensus 1142 qlI~~Lk~~~p-~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~g 1220 (1760)
..+..+|+..| ..+|.|-. .--.-+..+.++|||+|.++... | ..+.++.+.++..
T Consensus 169 ~~v~~~r~~~~~~~~I~vev----~t~eea~~A~~~gaD~I~ld~~~----------------~--e~l~~~v~~i~~~- 225 (269)
T cd01568 169 EAVKRARAAAPFEKKIEVEV----ETLEEAEEALEAGADIIMLDNMS----------------P--EELKEAVKLLKGL- 225 (269)
T ss_pred HHHHHHHHhCCCCCeEEEec----CCHHHHHHHHHcCCCEEEECCCC----------------H--HHHHHHHHHhccC-
Confidence 55788888776 45555543 11234566789999999996531 1 3455555554332
Q ss_pred CCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000266 1221 LRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1221 lr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
.+++|.++||| |...+...+..|||.+.+|..
T Consensus 226 --~~i~i~asGGI-t~~ni~~~a~~Gad~Isvgal 257 (269)
T cd01568 226 --PRVLLEASGGI-TLENIRAYAETGVDVISTGAL 257 (269)
T ss_pred --CCeEEEEECCC-CHHHHHHHHHcCCCEEEEcHH
Confidence 37999999999 588899999999999998753
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=91.67 E-value=0.59 Score=54.31 Aligned_cols=72 Identities=8% Similarity=-0.034 Sum_probs=52.0
Q ss_pred HHHHHHHH-cCCCEEEE---ecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHH
Q 000266 1168 VIASGVVK-GHADHVLI---SGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAA 1243 (1760)
Q Consensus 1168 ~iA~~aak-aGAD~IvI---sG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAl 1243 (1760)
..|....+ .|||-+.| ++...|.. .-...+.++.+.. .+||+++|||||-.|+-+.+
T Consensus 35 ~~a~~~~~~~Ga~~l~ivDLd~a~~~~~------------~n~~~I~~i~~~~-------~~pi~vGGGIrs~e~v~~~l 95 (234)
T PRK13587 35 ESIAYYSQFECVNRIHIVDLIGAKAQHA------------REFDYIKSLRRLT-------TKDIEVGGGIRTKSQIMDYF 95 (234)
T ss_pred HHHHHHHhccCCCEEEEEECcccccCCc------------chHHHHHHHHhhc-------CCeEEEcCCcCCHHHHHHHH
Confidence 46666666 68998765 45432211 1233455555431 48999999999999999999
Q ss_pred HcCCCccccchhHHH
Q 000266 1244 LLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1244 aLGAdaVg~GTa~L~ 1258 (1760)
.+||+.|-+||.++-
T Consensus 96 ~~Ga~kvvigt~a~~ 110 (234)
T PRK13587 96 AAGINYCIVGTKGIQ 110 (234)
T ss_pred HCCCCEEEECchHhc
Confidence 999999999997653
|
|
| >cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport | Back alignment and domain information |
|---|
Probab=91.38 E-value=1.3 Score=52.68 Aligned_cols=90 Identities=21% Similarity=0.226 Sum_probs=61.7
Q ss_pred HHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCC
Q 000266 1141 AQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVAND 1220 (1760)
Q Consensus 1141 aqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~g 1220 (1760)
.+.+..+|+..|..+|.|=. ... .-+..++++|||+|.++... | ..+.++.+.++..
T Consensus 171 ~~av~~~R~~~~~~~IgVev---~t~-eea~~A~~~gaD~I~ld~~~----------------p--~~l~~~~~~~~~~- 227 (272)
T cd01573 171 LKALARLRATAPEKKIVVEV---DSL-EEALAAAEAGADILQLDKFS----------------P--EELAELVPKLRSL- 227 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEc---CCH-HHHHHHHHcCCCEEEECCCC----------------H--HHHHHHHHHHhcc-
Confidence 56788888877666554432 222 34455789999999997531 1 1334555544321
Q ss_pred CCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000266 1221 LRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1221 lr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
..+++++++||| |...+...+..|||.|.+|..
T Consensus 228 -~~~i~i~AsGGI-~~~ni~~~~~~Gvd~I~vsai 260 (272)
T cd01573 228 -APPVLLAAAGGI-NIENAAAYAAAGADILVTSAP 260 (272)
T ss_pred -CCCceEEEECCC-CHHHHHHHHHcCCcEEEEChh
Confidence 135999999999 899999999999999966553
|
In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. |
| >PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism | Back alignment and domain information |
|---|
Probab=91.34 E-value=0.97 Score=52.26 Aligned_cols=104 Identities=16% Similarity=0.148 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccc-cC---------HHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHH
Q 000266 1137 IEDLAQLIYDLKNANPGARISVKLVSE-AG---------VGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWE 1206 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~-~G---------vg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~ 1206 (1760)
.+++.++++..+.. ..|+++-.... .. |...+..++++|||+|..+=. +..+ .+.
T Consensus 111 ~~~i~~v~~~~~~~--gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg-~~~~------------~t~ 175 (236)
T PF01791_consen 111 IEEIAAVVEECHKY--GLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTG-KPVG------------ATP 175 (236)
T ss_dssp HHHHHHHHHHHHTS--EEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-S-SSSC------------SHH
T ss_pred HHHHHHHHHHHhcC--CcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCC-cccc------------ccH
Confidence 35556666555532 55666653221 11 234455688999999988543 1111 233
Q ss_pred HHHHHHHHHHHhCCCCCceEEEEcCCc------CCHHHHHHHHHcCCC--ccccchh
Q 000266 1207 LGLAETHQTLVANDLRGRTILQTDGQL------KTGRDVAIAALLGAE--EFGFSTA 1255 (1760)
Q Consensus 1207 ~~Laev~q~L~~~glr~rV~LiadGGI------rtG~DVaKAlaLGAd--aVg~GTa 1255 (1760)
..+....+......+..++-|.++||+ ++-.++..++.+||+ ++.+|+.
T Consensus 176 ~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~ 232 (236)
T PF01791_consen 176 EDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRN 232 (236)
T ss_dssp HHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHH
T ss_pred HHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 334444444433323345669999999 999999999999995 5555543
|
|
| >TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase | Back alignment and domain information |
|---|
Probab=91.17 E-value=1.3 Score=52.68 Aligned_cols=88 Identities=19% Similarity=0.272 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhCC-CCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHh
Q 000266 1140 LAQLIYDLKNANP-GARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVA 1218 (1760)
Q Consensus 1140 LaqlI~~Lk~~~p-~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~ 1218 (1760)
+..-+.++|+..| ..+|.|=. ..-.-+..+.++|||+|.++... ...+.++.+.+
T Consensus 164 ~~~av~~~r~~~~~~~~Igvev----~t~eea~~A~~~gaDyI~ld~~~------------------~e~lk~~v~~~-- 219 (265)
T TIGR00078 164 IEKAVKRARAAAPFALKIEVEV----ESLEEAEEAAEAGADIIMLDNMK------------------PEEIKEAVQLL-- 219 (265)
T ss_pred HHHHHHHHHHhCCCCCeEEEEe----CCHHHHHHHHHcCCCEEEECCCC------------------HHHHHHHHHHh--
Confidence 4556788888765 45555443 12244667889999999995531 13456666553
Q ss_pred CCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000266 1219 NDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1219 ~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
+.++||.++||| |...+...+..|||.+.+|..
T Consensus 220 ---~~~ipi~AsGGI-~~~ni~~~a~~Gvd~Isvgai 252 (265)
T TIGR00078 220 ---KGRVLLEASGGI-TLDNLEEYAETGVDVISSGAL 252 (265)
T ss_pred ---cCCCcEEEECCC-CHHHHHHHHHcCCCEEEeCHH
Confidence 235899999999 799999999999999999653
|
Synonym: quinolinate phosphoribosyltransferase (decarboxylating) |
| >PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=91.07 E-value=1.5 Score=52.38 Aligned_cols=97 Identities=15% Similarity=0.196 Sum_probs=70.3
Q ss_pred CCCCC--CHHHHHHHHHHHHHhCC-CCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHH
Q 000266 1131 HHDIY--SIEDLAQLIYDLKNANP-GARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWEL 1207 (1760)
Q Consensus 1131 hhDiy--SiedLaqlI~~Lk~~~p-~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~ 1207 (1760)
|-.++ +.+.+.+.|..+|+..| ..+|.|-. .--.-+..++++|||+|.+|+.. ..
T Consensus 168 Hi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv----~slee~~ea~~~gaDiImLDn~s------------------~e 225 (281)
T PRK06543 168 HLAALAAQGLDLTEALRHVRAQLGHTTHVEVEV----DRLDQIEPVLAAGVDTIMLDNFS------------------LD 225 (281)
T ss_pred HHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEe----CCHHHHHHHHhcCCCEEEECCCC------------------HH
Confidence 44443 33467888999998876 35565553 33345667889999999999872 13
Q ss_pred HHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000266 1208 GLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1208 ~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
-+.++...+ +.++.|.++||| |...+...+..|+|.+.+|..
T Consensus 226 ~l~~av~~~-----~~~~~leaSGgI-~~~ni~~yA~tGVD~Is~gal 267 (281)
T PRK06543 226 DLREGVELV-----DGRAIVEASGNV-NLNTVGAIASTGVDVISVGAL 267 (281)
T ss_pred HHHHHHHHh-----CCCeEEEEECCC-CHHHHHHHHhcCCCEEEeCcc
Confidence 455555543 456789999999 788899999999999998874
|
|
| >cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=91.04 E-value=1.4 Score=52.47 Aligned_cols=87 Identities=18% Similarity=0.298 Sum_probs=62.6
Q ss_pred HHHHHHHHHhCC-CCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhC
Q 000266 1141 AQLIYDLKNANP-GARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVAN 1219 (1760)
Q Consensus 1141 aqlI~~Lk~~~p-~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~ 1219 (1760)
..-+..+|+..| ..+|.|=. ... .-+..+.++|||+|.++... ...|.++.+.+
T Consensus 169 ~~~v~~~r~~~~~~~~Igvev---~s~-eea~~A~~~gaDyI~ld~~~------------------~e~l~~~~~~~--- 223 (268)
T cd01572 169 TEAVRRARAAAPFTLKIEVEV---ETL-EQLKEALEAGADIIMLDNMS------------------PEELREAVALL--- 223 (268)
T ss_pred HHHHHHHHHhCCCCCeEEEEE---CCH-HHHHHHHHcCCCEEEECCcC------------------HHHHHHHHHHc---
Confidence 345777887765 44554443 223 44566889999999996531 24566666543
Q ss_pred CCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000266 1220 DLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1220 glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
+.++|+.++||| |...+...+..|+|.+.+|+.
T Consensus 224 --~~~ipi~AiGGI-~~~ni~~~a~~Gvd~Iav~sl 256 (268)
T cd01572 224 --KGRVLLEASGGI-TLENIRAYAETGVDYISVGAL 256 (268)
T ss_pred --CCCCcEEEECCC-CHHHHHHHHHcCCCEEEEEee
Confidence 236999999999 799999999999999999885
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) | Back alignment and domain information |
|---|
Probab=90.76 E-value=2.8 Score=46.91 Aligned_cols=103 Identities=19% Similarity=0.201 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCC-CCCCCCccccccccCCCH--HHHHHHHHHHH
Q 000266 1140 LAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHD-GGTGASRWTGIKNAGLPW--ELGLAETHQTL 1216 (1760)
Q Consensus 1140 LaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~-GGTGas~~~si~~~GlP~--~~~Laev~q~L 1216 (1760)
..+.+..++.. +..+++=+.+...... .... ..++|.|.+.+.. |+||. . .++ ...+.++.+..
T Consensus 94 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~-~~~~-~~~~d~i~~~~~~~g~tg~-~--------~~~~~~~~i~~~~~~~ 160 (211)
T cd00429 94 LHRTIQLIKEL--GMKAGVALNPGTPVEV-LEPY-LDEVDLVLVMSVNPGFGGQ-K--------FIPEVLEKIRKLRELI 160 (211)
T ss_pred HHHHHHHHHHC--CCeEEEEecCCCCHHH-HHHH-HhhCCEEEEEEECCCCCCc-c--------cCHHHHHHHHHHHHHH
Confidence 34556666654 4444443322222222 2222 3348999887653 44442 1 122 12233333332
Q ss_pred HhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000266 1217 VANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1217 ~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
.++ ..++|++++|||.. .++..++..|||.|-+|++++-
T Consensus 161 ~~~--~~~~pi~v~GGI~~-env~~~~~~gad~iivgsai~~ 199 (211)
T cd00429 161 PEN--NLNLLIEVDGGINL-ETIPLLAEAGADVLVAGSALFG 199 (211)
T ss_pred Hhc--CCCeEEEEECCCCH-HHHHHHHHcCCCEEEECHHHhC
Confidence 211 12489999999996 9999999999999999998763
|
This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. |
| >PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=90.56 E-value=1.6 Score=52.39 Aligned_cols=89 Identities=11% Similarity=0.146 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhCC-CCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHH
Q 000266 1139 DLAQLIYDLKNANP-GARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLV 1217 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p-~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~ 1217 (1760)
.+.+.|..+|+..| ..+|.|-. .--.-+..++++|||+|.+|+.+ ..-+.++.+.+
T Consensus 182 ~i~~av~~~r~~~~~~~kIeVEv----~tleea~~a~~agaDiImLDnms------------------pe~l~~av~~~- 238 (290)
T PRK06559 182 SVQKAIAQARAYAPFVKMVEVEV----ESLAAAEEAAAAGADIIMLDNMS------------------LEQIEQAITLI- 238 (290)
T ss_pred cHHHHHHHHHHhCCCCCeEEEEC----CCHHHHHHHHHcCCCEEEECCCC------------------HHHHHHHHHHh-
Confidence 46677888888765 45555543 33355677999999999999872 13456666543
Q ss_pred hCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000266 1218 ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1218 ~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
+.++.+.++||| |...+...+..|+|.+.+|..
T Consensus 239 ----~~~~~leaSGGI-~~~ni~~yA~tGVD~Is~gal 271 (290)
T PRK06559 239 ----AGRSRIECSGNI-DMTTISRFRGLAIDYVSSGSL 271 (290)
T ss_pred ----cCceEEEEECCC-CHHHHHHHHhcCCCEEEeCcc
Confidence 347999999999 788899999999999998874
|
|
| >PRK07226 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=90.43 E-value=1.8 Score=51.25 Aligned_cols=65 Identities=18% Similarity=0.050 Sum_probs=45.3
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcC--CHHHHHHH----H
Q 000266 1170 ASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLK--TGRDVAIA----A 1243 (1760)
Q Consensus 1170 A~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIr--tG~DVaKA----l 1243 (1760)
+..+.+.|||+|..+ ..| ....+.++.+. .++||.++|||+ |-.++.+. +
T Consensus 166 ~~~a~e~GAD~vKt~-~~~----------------~~~~l~~~~~~-------~~ipV~a~GGi~~~~~~~~l~~v~~~~ 221 (267)
T PRK07226 166 ARVAAELGADIVKTN-YTG----------------DPESFREVVEG-------CPVPVVIAGGPKTDTDREFLEMVRDAM 221 (267)
T ss_pred HHHHHHHCCCEEeeC-CCC----------------CHHHHHHHHHh-------CCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 455778999999775 211 12345554432 258999999999 66666555 5
Q ss_pred HcCCCccccchhHHH
Q 000266 1244 LLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1244 aLGAdaVg~GTa~L~ 1258 (1760)
.+||+++.+|+..+-
T Consensus 222 ~aGA~Gis~gr~i~~ 236 (267)
T PRK07226 222 EAGAAGVAVGRNVFQ 236 (267)
T ss_pred HcCCcEEehhhhhhc
Confidence 999999988887553
|
|
| >TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=90.25 E-value=1.6 Score=51.28 Aligned_cols=93 Identities=12% Similarity=-0.014 Sum_probs=56.6
Q ss_pred HHHHHHHHhC--CCCceEEEEcc------ccCHHHH---HHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHH
Q 000266 1142 QLIYDLKNAN--PGARISVKLVS------EAGVGVI---ASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLA 1210 (1760)
Q Consensus 1142 qlI~~Lk~~~--p~~pV~VKlv~------~~Gvg~i---A~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~La 1210 (1760)
+.+..+++.. .++|++|.... ......+ +..+.++|||+|-++.. +....+.
T Consensus 123 ~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~~~-----------------~~~~~l~ 185 (258)
T TIGR01949 123 RDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKTPYT-----------------GDIDSFR 185 (258)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEeccCC-----------------CCHHHHH
Confidence 3445454331 26788775431 1111222 34577899999987521 0133455
Q ss_pred HHHHHHHhCCCCCceEEEEcCCcC--CHHH----HHHHHHcCCCccccchhHHH
Q 000266 1211 ETHQTLVANDLRGRTILQTDGQLK--TGRD----VAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1211 ev~q~L~~~glr~rV~LiadGGIr--tG~D----VaKAlaLGAdaVg~GTa~L~ 1258 (1760)
++.+. .++||.+.|||+ |-.+ +..++..||+++.+|+..+-
T Consensus 186 ~~~~~-------~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~ 232 (258)
T TIGR01949 186 DVVKG-------CPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQ 232 (258)
T ss_pred HHHHh-------CCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhc
Confidence 55443 258999999999 5444 45556999999999987663
|
Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally. |
| >PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=90.24 E-value=1.9 Score=51.60 Aligned_cols=89 Identities=17% Similarity=0.161 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhCC-CCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHH
Q 000266 1139 DLAQLIYDLKNANP-GARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLV 1217 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p-~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~ 1217 (1760)
++.+.|..+|+..| ..+|.|-. ..-.-+..++++|||+|.+|+.+ ..-+.++.+.+
T Consensus 179 ~i~~ai~~~r~~~~~~~kIeVEv----~tleea~ea~~~gaDiI~LDn~s------------------~e~l~~av~~~- 235 (281)
T PRK06106 179 GVREAIRRARAGVGHLVKIEVEV----DTLDQLEEALELGVDAVLLDNMT------------------PDTLREAVAIV- 235 (281)
T ss_pred cHHHHHHHHHHhCCCCCcEEEEe----CCHHHHHHHHHcCCCEEEeCCCC------------------HHHHHHHHHHh-
Confidence 36677888888776 34555543 33445677899999999999862 13455555543
Q ss_pred hCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000266 1218 ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1218 ~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
+.+.++.++||| |...+......|+|.+.+|..
T Consensus 236 ----~~~~~leaSGGI-~~~ni~~yA~tGVD~Is~Gal 268 (281)
T PRK06106 236 ----AGRAITEASGRI-TPETAPAIAASGVDLISVGWL 268 (281)
T ss_pred ----CCCceEEEECCC-CHHHHHHHHhcCCCEEEeChh
Confidence 346789999999 678899999999999999974
|
|
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=90.23 E-value=1 Score=51.88 Aligned_cols=77 Identities=17% Similarity=0.165 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHH
Q 000266 1165 GVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAAL 1244 (1760)
Q Consensus 1165 Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAla 1244 (1760)
....+|..+.+.|+|.|.+--.++.. .... .....|.++.+. -.+|+++.|||++-.|+..++.
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~~--------~~~~-~~~~~i~~i~~~-------~~~~l~v~GGi~~~~~~~~~~~ 96 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGAF--------EGER-KNAEAIEKIIEA-------VGVPVQLGGGIRSAEDAASLLD 96 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhhh--------cCCc-ccHHHHHHHHHH-------cCCcEEEcCCcCCHHHHHHHHH
Confidence 34467777889999998774443211 0001 112344444433 1589999999999999999999
Q ss_pred cCCCccccchhHH
Q 000266 1245 LGAEEFGFSTAPL 1257 (1760)
Q Consensus 1245 LGAdaVg~GTa~L 1257 (1760)
+||+.|-+|+..+
T Consensus 97 ~Ga~~v~iGs~~~ 109 (241)
T PRK13585 97 LGVDRVILGTAAV 109 (241)
T ss_pred cCCCEEEEChHHh
Confidence 9999999999765
|
|
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=90.17 E-value=5.8 Score=49.30 Aligned_cols=144 Identities=18% Similarity=0.240 Sum_probs=97.1
Q ss_pred CCccCHHHHHHHHhccCCCCeeEEEEEEeeCCCChhhHHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCccccHHHHH
Q 000266 688 GPLLSIEEMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRVAVSSLLAV 767 (1760)
Q Consensus 688 sPiL~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~l~~al~~l~~~a~~av~~G~~iliLsDr~~~~~~~~ip~lLav 767 (1760)
.|.++++++++|++... +.++.. |... -+.|..+++.|+.-|++|-.+-..---..+++-++
T Consensus 212 ~~~~~w~~i~~l~~~~~-------~PvivK---Gv~~--------~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L 273 (367)
T TIGR02708 212 KQKLSPRDIEEIAGYSG-------LPVYVK---GPQC--------PEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSL 273 (367)
T ss_pred CCCCCHHHHHHHHHhcC-------CCEEEe---CCCC--------HHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHH
Confidence 58899999999987421 111111 1111 36678889999999999987522111111223333
Q ss_pred HHHHHHHHHcCCCCceeEEEeeCCCCcHHHHHHHHhcCcccc---cHHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Q 000266 768 GAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAI---CPYLATEAIWRLQVDGKIPPKASGEFHSKDELVKK 844 (1760)
Q Consensus 768 ~avh~~Li~~~~R~~~~lvvesge~re~Hh~a~L~GyGA~av---~Pyla~e~~~~~~~~~~~~~~~~~~~~~~~~~~~n 844 (1760)
..+... ...++-||+ +|.+|.--+++-.+-+||++| .|+|- .|.. ..++.+.+
T Consensus 274 ~ei~~a-----v~~~i~vi~-dGGIr~g~Dv~KaLalGAd~V~igR~~l~-----~la~-------------~G~~gv~~ 329 (367)
T TIGR02708 274 QEVAEA-----VDKRVPIVF-DSGVRRGQHVFKALASGADLVALGRPVIY-----GLAL-------------GGSQGARQ 329 (367)
T ss_pred HHHHHH-----hCCCCcEEe-eCCcCCHHHHHHHHHcCCCEEEEcHHHHH-----HHHh-------------cCHHHHHH
Confidence 333332 344577888 699999999999999999998 56653 2211 23567888
Q ss_pred HHHHHHHHHHHHHHhhchhhhhcccccch
Q 000266 845 YFKASNYGMMKVLAKMGISTLASYKGAQI 873 (1760)
Q Consensus 845 y~~a~~~GllKvmsKMGIstl~SY~gaqi 873 (1760)
+++-+...|.-.|.-+|.++|..-+...+
T Consensus 330 ~l~~l~~El~~~M~l~G~~~i~eL~~~~l 358 (367)
T TIGR02708 330 VFEYLNKELKRVMQLTGTQTIEDVKGFDL 358 (367)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHhCcccc
Confidence 89999999999999999999998655443
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=90.07 E-value=3.4 Score=46.29 Aligned_cols=105 Identities=16% Similarity=0.118 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecC-CCCCCCCccccccccCCCHHHHHHHHHHHHH
Q 000266 1139 DLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGH-DGGTGASRWTGIKNAGLPWELGLAETHQTLV 1217 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~-~GGTGas~~~si~~~GlP~~~~Laev~q~L~ 1217 (1760)
+..+.+..+|... ..+++=+.+...... ......++|.|.+.+. .|+||.. +.......+.++.+.+.
T Consensus 92 ~~~~~~~~~~~~g--~~~~~~~~~~t~~e~--~~~~~~~~d~i~~~~~~~g~tg~~-------~~~~~~~~i~~i~~~~~ 160 (210)
T TIGR01163 92 HIHRLLQLIKDLG--AKAGIVLNPATPLEF--LEYVLPDVDLVLLMSVNPGFGGQK-------FIPDTLEKIREVRKMID 160 (210)
T ss_pred hHHHHHHHHHHcC--CcEEEEECCCCCHHH--HHHHHhhCCEEEEEEEcCCCCccc-------ccHHHHHHHHHHHHHHH
Confidence 4456667777663 333332222222222 2233457999877654 3444421 11112234445544433
Q ss_pred hCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHH
Q 000266 1218 ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1218 ~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L 1257 (1760)
+ .+..+++.++|||+ ..++..++..|||.+-+|+++.
T Consensus 161 ~--~~~~~~i~v~GGI~-~env~~l~~~gad~iivgsai~ 197 (210)
T TIGR01163 161 E--NGLSILIEVDGGVN-DDNARELAEAGADILVAGSAIF 197 (210)
T ss_pred h--cCCCceEEEECCcC-HHHHHHHHHcCCCEEEEChHHh
Confidence 2 12247899999995 6999999999999999999865
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP) | Back alignment and domain information |
|---|
Probab=90.06 E-value=1.7 Score=49.16 Aligned_cols=67 Identities=27% Similarity=0.349 Sum_probs=47.3
Q ss_pred HHHHcCCCEEEEecCCC----CCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC-
Q 000266 1172 GVVKGHADHVLISGHDG----GTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG- 1246 (1760)
Q Consensus 1172 ~aakaGAD~IvIsG~~G----GTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG- 1246 (1760)
.+.+.++|+|.++...+ |+|.. .+|. .|.++. .++|+++.||| |+..+..++..|
T Consensus 115 ~~~~~~aD~il~dt~~~~~~Gg~g~~---------~~~~-~l~~~~---------~~~PvilaGGI-~~~Nv~~~i~~~~ 174 (203)
T cd00405 115 AAYAGEVDAILLDSKSGGGGGGTGKT---------FDWS-LLRGLA---------SRKPVILAGGL-TPDNVAEAIRLVR 174 (203)
T ss_pred hhccccCCEEEEcCCCCCCCCCCcce---------EChH-Hhhccc---------cCCCEEEECCC-ChHHHHHHHHhcC
Confidence 35567999999976533 22211 1232 233221 25899999999 999999999999
Q ss_pred CCccccchhHHH
Q 000266 1247 AEEFGFSTAPLI 1258 (1760)
Q Consensus 1247 AdaVg~GTa~L~ 1258 (1760)
+++|-+++++..
T Consensus 175 ~~gvdv~S~ie~ 186 (203)
T cd00405 175 PYGVDVSSGVET 186 (203)
T ss_pred CCEEEcCCcccC
Confidence 999999997554
|
Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes. |
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=90.05 E-value=1.3 Score=50.63 Aligned_cols=81 Identities=17% Similarity=0.141 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHh
Q 000266 1139 DLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVA 1218 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~ 1218 (1760)
+..+.|+++++.+|+..|.+-.|.+ ...+..+.++||++|+--+. -.++.+++.+
T Consensus 45 ~a~~~i~~l~~~~~~~~vGAGTVl~---~~~a~~a~~aGA~FivsP~~----------------------~~~v~~~~~~ 99 (204)
T TIGR01182 45 VALDAIRLLRKEVPDALIGAGTVLN---PEQLRQAVDAGAQFIVSPGL----------------------TPELAKHAQD 99 (204)
T ss_pred cHHHHHHHHHHHCCCCEEEEEeCCC---HHHHHHHHHcCCCEEECCCC----------------------CHHHHHHHHH
Confidence 4566799999888877776665533 24567799999999943221 1345555555
Q ss_pred CCCCCceEEEEcCCcCCHHHHHHHHHcCCCcc
Q 000266 1219 NDLRGRTILQTDGQLKTGRDVAIAALLGAEEF 1250 (1760)
Q Consensus 1219 ~glr~rV~LiadGGIrtG~DVaKAlaLGAdaV 1250 (1760)
++ ++.+- |+.|+.++..|+.+||+.|
T Consensus 100 ~~----i~~iP--G~~TptEi~~A~~~Ga~~v 125 (204)
T TIGR01182 100 HG----IPIIP--GVATPSEIMLALELGITAL 125 (204)
T ss_pred cC----CcEEC--CCCCHHHHHHHHHCCCCEE
Confidence 43 55555 9999999999999999965
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=90.01 E-value=0.68 Score=54.52 Aligned_cols=69 Identities=12% Similarity=-0.052 Sum_probs=52.5
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC
Q 000266 1167 GVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG 1246 (1760)
Q Consensus 1167 g~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG 1246 (1760)
...|..-.++||+.|.|--- |.|-...+.++.+.. .++|++.||||+ .+|-+.+.+|
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL---------------g~~n~~~i~~i~~~~-------~~~v~vGGGIr~-e~v~~~l~aG 97 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML---------------GPNNDDAAKEALHAY-------PGGLQVGGGIND-TNAQEWLDEG 97 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC---------------CCCcHHHHHHHHHhC-------CCCEEEeCCcCH-HHHHHHHHcC
Confidence 35778888999999866332 223234555655542 489999999998 9999999999
Q ss_pred CCccccchhHHH
Q 000266 1247 AEEFGFSTAPLI 1258 (1760)
Q Consensus 1247 AdaVg~GTa~L~ 1258 (1760)
|+.|.+||.++-
T Consensus 98 a~rVvIGS~av~ 109 (253)
T TIGR02129 98 ASHVIVTSWLFT 109 (253)
T ss_pred CCEEEECcHHHh
Confidence 999999998664
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >PRK07188 nicotinate phosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.84 E-value=2.2 Score=52.54 Aligned_cols=116 Identities=9% Similarity=0.038 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHc-CCCE--EEEecCCCCC--CC-Ccc---ccccccCCCHHHHH
Q 000266 1139 DLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKG-HADH--VLISGHDGGT--GA-SRW---TGIKNAGLPWELGL 1209 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aaka-GAD~--IvIsG~~GGT--Ga-s~~---~si~~~GlP~~~~L 1209 (1760)
|+.+.+..+++..|..|+++=.--....-.-|..++++ |.|. |-||-.+.-- .- +.. ......|.. ...+
T Consensus 188 ~~~~A~~a~~~~~Pe~~~ivlVD~~~d~~~~al~~a~~~g~~l~gVRlDs~gdl~DK~~~~~~~~~~~~~~~G~~-~~l~ 266 (352)
T PRK07188 188 DVVEACKAYHKTFPEDELIALVDYNNDVITDSLKVAREFGDKLKGVRVDTSKNMIDKYFIRHPEVLGTFDPRGVN-PELI 266 (352)
T ss_pred cHHHHHHHHHHHCCCCCeEEEEecCcccHHHHHHHHHHhCCCccEEEeCCcchHhhhhccccccccccccccccc-HHHH
Confidence 34566777888888877755432111123445556676 9888 8776531100 00 000 000123443 3577
Q ss_pred HHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC--CCccccchhHH
Q 000266 1210 AETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG--AEEFGFSTAPL 1257 (1760)
Q Consensus 1210 aev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG--AdaVg~GTa~L 1257 (1760)
.++++.|.+.|.. +|.|+++||| +...|......| .|.+|+||...
T Consensus 267 ~~vr~~Ld~~g~~-~vkI~aSgGi-ne~~I~~~~~~g~piD~~GVGt~l~ 314 (352)
T PRK07188 267 KALRKALDENGGK-HVKIIVSSGF-DAKKIREFEAQNVPVDIYGVGSSLL 314 (352)
T ss_pred HHHHHHHhhCCCC-CcEEEEeCCC-CHHHHHHHHHcCCCccEEecCcccc
Confidence 8899999888754 6999999999 788888888899 58999999744
|
|
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.72 E-value=1.8 Score=54.11 Aligned_cols=67 Identities=15% Similarity=0.095 Sum_probs=46.5
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCC
Q 000266 1168 VIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGA 1247 (1760)
Q Consensus 1168 ~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGA 1247 (1760)
..+..++++|+|+|+||...|- +......+.++.+..+ ++ .++.|++.|..++..++.+||
T Consensus 156 ~~v~~lv~aGvDvI~iD~a~g~------------~~~~~~~v~~ik~~~p------~~-~vi~g~V~T~e~a~~l~~aGa 216 (404)
T PRK06843 156 ERVEELVKAHVDILVIDSAHGH------------STRIIELVKKIKTKYP------NL-DLIAGNIVTKEAALDLISVGA 216 (404)
T ss_pred HHHHHHHhcCCCEEEEECCCCC------------ChhHHHHHHHHHhhCC------CC-cEEEEecCCHHHHHHHHHcCC
Confidence 3566789999999999876432 1112233444443311 23 367899999999999999999
Q ss_pred Cccccc
Q 000266 1248 EEFGFS 1253 (1760)
Q Consensus 1248 daVg~G 1253 (1760)
|+|.+|
T Consensus 217 D~I~vG 222 (404)
T PRK06843 217 DCLKVG 222 (404)
T ss_pred CEEEEC
Confidence 998765
|
|
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=89.56 E-value=0.8 Score=53.09 Aligned_cols=72 Identities=15% Similarity=0.009 Sum_probs=52.5
Q ss_pred HHHHHHHHHHcCCCEEEE---ecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHH
Q 000266 1166 VGVIASGVVKGHADHVLI---SGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIA 1242 (1760)
Q Consensus 1166 vg~iA~~aakaGAD~IvI---sG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKA 1242 (1760)
....|....+.|||.+.| ++..|.. +-...+.++.+.. .+||+++||||+-+||-++
T Consensus 37 p~~~a~~~~~~g~~~l~i~DLd~~~~~~-------------~n~~~i~~i~~~~-------~~~v~vgGGir~~edv~~~ 96 (233)
T cd04723 37 PLDVARAYKELGFRGLYIADLDAIMGRG-------------DNDEAIRELAAAW-------PLGLWVDGGIRSLENAQEW 96 (233)
T ss_pred HHHHHHHHHHCCCCEEEEEeCccccCCC-------------ccHHHHHHHHHhC-------CCCEEEecCcCCHHHHHHH
Confidence 345777788889998866 4443211 1233455554431 4899999999999999999
Q ss_pred HHcCCCccccchhHH
Q 000266 1243 ALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1243 laLGAdaVg~GTa~L 1257 (1760)
+.+||+.|-+||..+
T Consensus 97 l~~Ga~~viigt~~~ 111 (233)
T cd04723 97 LKRGASRVIVGTETL 111 (233)
T ss_pred HHcCCCeEEEcceec
Confidence 999999999999654
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=89.30 E-value=1.8 Score=51.54 Aligned_cols=92 Identities=21% Similarity=0.295 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHh
Q 000266 1139 DLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVA 1218 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~ 1218 (1760)
++.+.|..+|+..|..+ |.-.++.--.-+..++++|||+|.+|+.. | .-+.++.+.|
T Consensus 173 ~i~~Av~~aR~~~~~~~---kIEVEvesle~~~eAl~agaDiImLDNm~----------------~--e~~~~av~~l-- 229 (280)
T COG0157 173 SITEAVRRARAAAPFTK---KIEVEVESLEEAEEALEAGADIIMLDNMS----------------P--EELKEAVKLL-- 229 (280)
T ss_pred cHHHHHHHHHHhCCCCc---eEEEEcCCHHHHHHHHHcCCCEEEecCCC----------------H--HHHHHHHHHh--
Confidence 46778888988765544 33323344455677999999999999872 2 2455666554
Q ss_pred CCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000266 1219 NDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1219 ~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
+++.++.+-++||| |...+......|.|.+.+|..
T Consensus 230 -~~~~~~~lEaSGgI-t~~ni~~yA~tGVD~IS~gal 264 (280)
T COG0157 230 -GLAGRALLEASGGI-TLENIREYAETGVDVISVGAL 264 (280)
T ss_pred -ccCCceEEEEeCCC-CHHHHHHHhhcCCCEEEeCcc
Confidence 56778999999999 678899999999999988864
|
|
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=89.20 E-value=3 Score=51.40 Aligned_cols=100 Identities=16% Similarity=0.150 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHHHhCC------CCc--eEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHH
Q 000266 1135 YSIEDLAQLIYDLKNANP------GAR--ISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWE 1206 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p------~~p--V~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~ 1206 (1760)
.++|+..+.|.++|+.+| +.+ |.+=+.....-...+..+.++|+|+|+||...|-+ .+ ..
T Consensus 70 ~~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~er~~~L~~agvD~ivID~a~g~s--------~~----~~ 137 (352)
T PF00478_consen 70 MSIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDFERAEALVEAGVDVIVIDSAHGHS--------EH----VI 137 (352)
T ss_dssp SCHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHHHHHHHHHHTT-SEEEEE-SSTTS--------HH----HH
T ss_pred CCHHHHHHHHhhhccccccccccccccceEEEEecCCHHHHHHHHHHHHcCCCEEEccccCccH--------HH----HH
Confidence 678999999999987532 233 33333222233456677899999999999765432 11 11
Q ss_pred HHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccc
Q 000266 1207 LGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFS 1253 (1760)
Q Consensus 1207 ~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~G 1253 (1760)
..+..+.+.. .+++|| .|.+.|+..+...+..|||+|=+|
T Consensus 138 ~~ik~ik~~~------~~~~vi-aGNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 138 DMIKKIKKKF------PDVPVI-AGNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp HHHHHHHHHS------TTSEEE-EEEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHhC------CCceEE-ecccCCHHHHHHHHHcCCCEEEEe
Confidence 2333333321 257777 788999999999999999976555
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=89.05 E-value=1.9 Score=49.33 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=31.2
Q ss_pred ceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000266 1224 RTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1224 rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
.+|+++.||| |..++...+..||++|+++++++-
T Consensus 151 ~ipvvaiGGI-~~~n~~~~~~aGa~~vav~s~l~~ 184 (206)
T PRK09140 151 DVPVFAVGGV-TPENLAPYLAAGAAGFGLGSALYR 184 (206)
T ss_pred CCeEEEECCC-CHHHHHHHHHCCCeEEEEehHhcc
Confidence 5999999999 889999999999999999998643
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=89.05 E-value=1.5 Score=51.74 Aligned_cols=76 Identities=18% Similarity=0.109 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHcCCCEEEEecCCCC-CCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHH
Q 000266 1165 GVGVIASGVVKGHADHVLISGHDGG-TGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAA 1243 (1760)
Q Consensus 1165 Gvg~iA~~aakaGAD~IvIsG~~GG-TGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAl 1243 (1760)
....+|....+.|||.|.+.--++- ++.. |-...+.++.+. ..+||+++|||++-.|+.+.+
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~----------~n~~~i~~i~~~-------~~~pv~~gGGi~s~~d~~~l~ 93 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDASKRGSE----------PNYELIENLASE-------CFMPLCYGGGIKTLEQAKKIF 93 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCCCc----------ccHHHHHHHHHh-------CCCCEEECCCCCCHHHHHHHH
Confidence 3346778888999999877544332 2211 233455555543 258999999999999999999
Q ss_pred HcCCCccccchhHH
Q 000266 1244 LLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1244 aLGAdaVg~GTa~L 1257 (1760)
.+||+.|-+|++.+
T Consensus 94 ~~G~~~vvigs~~~ 107 (258)
T PRK01033 94 SLGVEKVSINTAAL 107 (258)
T ss_pred HCCCCEEEEChHHh
Confidence 99999999998644
|
|
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=89.01 E-value=1.5 Score=49.21 Aligned_cols=33 Identities=12% Similarity=0.019 Sum_probs=30.6
Q ss_pred ceEEEEcCCcCCHHHHHHHHHcCCCccccchhHH
Q 000266 1224 RTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1224 rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L 1257 (1760)
.+|+++.||| |..++...+..||++|++|+...
T Consensus 143 ~~p~~a~GGI-~~~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 143 QVRFMPTGGV-SLDNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred CCeEEEeCCC-CHHHHHHHHHCCCEEEEEchhcc
Confidence 4899999999 99999999999999999998754
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.97 E-value=3.1 Score=48.74 Aligned_cols=76 Identities=18% Similarity=0.149 Sum_probs=53.4
Q ss_pred HHHHHHHHHHcCCCEEEEecCCC-CCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHH
Q 000266 1166 VGVIASGVVKGHADHVLISGHDG-GTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAAL 1244 (1760)
Q Consensus 1166 vg~iA~~aakaGAD~IvIsG~~G-GTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAla 1244 (1760)
.-..+....+.|+..|++.--+= ||- .| |-...+.+..+.. ++|||++||+++=.|+-.+..
T Consensus 149 ~~~l~~~~~~~g~~~ii~TdI~~DGtl---------~G-~n~~l~~~l~~~~-------~ipviaSGGv~s~~Di~~l~~ 211 (241)
T COG0106 149 LEELAKRLEEVGLAHILYTDISRDGTL---------SG-PNVDLVKELAEAV-------DIPVIASGGVSSLDDIKALKE 211 (241)
T ss_pred HHHHHHHHHhcCCCeEEEEeccccccc---------CC-CCHHHHHHHHHHh-------CcCEEEecCcCCHHHHHHHHh
Confidence 33455667777888777643211 121 12 3345556666552 699999999999999999999
Q ss_pred c-CCCccccchhHHH
Q 000266 1245 L-GAEEFGFSTAPLI 1258 (1760)
Q Consensus 1245 L-GAdaVg~GTa~L~ 1258 (1760)
+ |.+++-+|+++..
T Consensus 212 ~~G~~GvIvG~ALy~ 226 (241)
T COG0106 212 LSGVEGVIVGRALYE 226 (241)
T ss_pred cCCCcEEEEehHHhc
Confidence 9 9999999998765
|
|
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.94 E-value=1.7 Score=50.38 Aligned_cols=71 Identities=14% Similarity=0.158 Sum_probs=54.5
Q ss_pred HHHHHHHHcCCCEEEE-e--c-CCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHH
Q 000266 1168 VIASGVVKGHADHVLI-S--G-HDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAA 1243 (1760)
Q Consensus 1168 ~iA~~aakaGAD~IvI-s--G-~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAl 1243 (1760)
..|..=.+.|||=++. + . ++|+ -+....+.++.+.+ -||+-+.|||++-.|+-+.|
T Consensus 34 elA~~Y~e~GADElvFlDItAs~~gr-------------~~~~~vv~r~A~~v-------fiPltVGGGI~s~eD~~~ll 93 (256)
T COG0107 34 ELAKRYNEEGADELVFLDITASSEGR-------------ETMLDVVERVAEQV-------FIPLTVGGGIRSVEDARKLL 93 (256)
T ss_pred HHHHHHHHcCCCeEEEEecccccccc-------------hhHHHHHHHHHhhc-------eeeeEecCCcCCHHHHHHHH
Confidence 4566677899998764 2 1 2222 14455666666653 59999999999999999999
Q ss_pred HcCCCccccchhHHH
Q 000266 1244 LLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1244 aLGAdaVg~GTa~L~ 1258 (1760)
.+|||-|.+.|+++.
T Consensus 94 ~aGADKVSINsaAv~ 108 (256)
T COG0107 94 RAGADKVSINSAAVK 108 (256)
T ss_pred HcCCCeeeeChhHhc
Confidence 999999999998876
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=88.87 E-value=1.4 Score=50.71 Aligned_cols=76 Identities=20% Similarity=0.147 Sum_probs=52.7
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCC-CCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHH
Q 000266 1166 VGVIASGVVKGHADHVLISGHDGG-TGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAAL 1244 (1760)
Q Consensus 1166 vg~iA~~aakaGAD~IvIsG~~GG-TGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAla 1244 (1760)
...+|....+.|+|.|.|.--++. ++. | +-...+.++.+. ..+||+++||+++-.|+.+++.
T Consensus 32 p~~~a~~~~~~g~~~i~i~dl~~~~~~~---------~-~n~~~~~~i~~~-------~~~pv~~~ggi~~~~d~~~~~~ 94 (232)
T TIGR03572 32 PVNAARIYNAKGADELIVLDIDASKRGR---------E-PLFELISNLAEE-------CFMPLTVGGGIRSLEDAKKLLS 94 (232)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCCcccCC---------C-CCHHHHHHHHHh-------CCCCEEEECCCCCHHHHHHHHH
Confidence 345677788899997766433331 211 1 122344444443 2589999999999999999999
Q ss_pred cCCCccccchhHHH
Q 000266 1245 LGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1245 LGAdaVg~GTa~L~ 1258 (1760)
+||+.|.+|+..+-
T Consensus 95 ~G~~~vilg~~~l~ 108 (232)
T TIGR03572 95 LGADKVSINTAALE 108 (232)
T ss_pred cCCCEEEEChhHhc
Confidence 99999999987553
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=88.86 E-value=2.7 Score=50.62 Aligned_cols=87 Identities=15% Similarity=0.169 Sum_probs=61.9
Q ss_pred HHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCC
Q 000266 1141 AQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVAND 1220 (1760)
Q Consensus 1141 aqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~g 1220 (1760)
.+.+..+|+..+..+|-|-. .--.-+..++++|||+|.+|+.. | .-+.++.+.+
T Consensus 193 ~~av~~~r~~~~~~kIeVEv----etleea~eA~~aGaDiImLDnms----------------p--e~l~~av~~~---- 246 (294)
T PRK06978 193 GAALDAAFALNAGVPVQIEV----ETLAQLETALAHGAQSVLLDNFT----------------L--DMMREAVRVT---- 246 (294)
T ss_pred HHHHHHHHHhCCCCcEEEEc----CCHHHHHHHHHcCCCEEEECCCC----------------H--HHHHHHHHhh----
Confidence 34566666654444555543 33345667899999999999872 1 3445555543
Q ss_pred CCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000266 1221 LRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1221 lr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
+.++.|.++||| |...+...+..|.|.+.+|..
T Consensus 247 -~~~~~lEaSGGI-t~~ni~~yA~tGVD~IS~gal 279 (294)
T PRK06978 247 -AGRAVLEVSGGV-NFDTVRAFAETGVDRISIGAL 279 (294)
T ss_pred -cCCeEEEEECCC-CHHHHHHHHhcCCCEEEeCcc
Confidence 347899999999 688899999999999988864
|
|
| >PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=88.80 E-value=2.8 Score=50.11 Aligned_cols=88 Identities=10% Similarity=0.114 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhCC-CCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHh
Q 000266 1140 LAQLIYDLKNANP-GARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVA 1218 (1760)
Q Consensus 1140 LaqlI~~Lk~~~p-~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~ 1218 (1760)
+.+.+..+|+..| ...|.|=. ... .-+..+.++|||+|.++. .| ...|.++.+.+
T Consensus 174 ~~~~v~~aR~~~~~~~~Igvsv---~tl-eea~~A~~~gaDyI~lD~---------------~~---~e~l~~~~~~~-- 229 (277)
T PRK08072 174 ITKAVTSVREKLGHMVKIEVET---ETE-EQVREAVAAGADIIMFDN---------------RT---PDEIREFVKLV-- 229 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEEEe---CCH-HHHHHHHHcCCCEEEECC---------------CC---HHHHHHHHHhc--
Confidence 6677888888875 33444432 222 345668899999998842 12 24566666543
Q ss_pred CCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000266 1219 NDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1219 ~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
+.+++|.+.||| |...+...+..|||.+.+|..
T Consensus 230 ---~~~i~i~AiGGI-t~~ni~~~a~~Gvd~IAvg~l 262 (277)
T PRK08072 230 ---PSAIVTEASGGI-TLENLPAYGGTGVDYISLGFL 262 (277)
T ss_pred ---CCCceEEEECCC-CHHHHHHHHHcCCCEEEEChh
Confidence 246899999999 899999999999999999974
|
|
| >cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases | Back alignment and domain information |
|---|
Probab=88.72 E-value=3.3 Score=47.62 Aligned_cols=78 Identities=22% Similarity=0.117 Sum_probs=59.4
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCc
Q 000266 1170 ASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEE 1249 (1760)
Q Consensus 1170 A~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAda 1249 (1760)
|..++++||++|.. +-|+ ++++|.+....+.++.+.+..+++. . =+...|+||..++..|+.+||+.
T Consensus 115 a~~Aa~AGA~yvsP--~vgR--------~~~~g~dg~~~i~~i~~~~~~~~~~--t-kil~As~r~~~ei~~a~~~Gad~ 181 (211)
T cd00956 115 ALLAAKAGATYVSP--FVGR--------IDDLGGDGMELIREIRTIFDNYGFD--T-KILAASIRNPQHVIEAALAGADA 181 (211)
T ss_pred HHHHHHcCCCEEEE--ecCh--------HhhcCCCHHHHHHHHHHHHHHcCCC--c-eEEecccCCHHHHHHHHHcCCCE
Confidence 34588899998533 3233 4667777788889999988877653 3 44566899999999999999999
Q ss_pred cccchhHHHHh
Q 000266 1250 FGFSTAPLITL 1260 (1760)
Q Consensus 1250 Vg~GTa~L~Al 1260 (1760)
|=+.-..|-.+
T Consensus 182 vTv~~~vl~~l 192 (211)
T cd00956 182 ITLPPDVLEQL 192 (211)
T ss_pred EEeCHHHHHHH
Confidence 98888777655
|
FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase. |
| >TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain | Back alignment and domain information |
|---|
Probab=88.62 E-value=2.4 Score=45.43 Aligned_cols=74 Identities=19% Similarity=0.151 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHH
Q 000266 1165 GVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAAL 1244 (1760)
Q Consensus 1165 Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAla 1244 (1760)
-...++..+.+.+||+|.||+..+.+ ...++++.+.|++.+.. +++|++ ||.....|......
T Consensus 41 s~e~~v~aa~e~~adii~iSsl~~~~---------------~~~~~~~~~~L~~~g~~-~i~viv-GG~~~~~~~~~l~~ 103 (132)
T TIGR00640 41 TPEEIARQAVEADVHVVGVSSLAGGH---------------LTLVPALRKELDKLGRP-DILVVV-GGVIPPQDFDELKE 103 (132)
T ss_pred CHHHHHHHHHHcCCCEEEEcCchhhh---------------HHHHHHHHHHHHhcCCC-CCEEEE-eCCCChHhHHHHHH
Confidence 34567788899999999999986542 34678888889888764 577666 66556788999999
Q ss_pred cCCCcc-ccchh
Q 000266 1245 LGAEEF-GFSTA 1255 (1760)
Q Consensus 1245 LGAdaV-g~GTa 1255 (1760)
+|.+++ ..||.
T Consensus 104 ~Gvd~~~~~gt~ 115 (132)
T TIGR00640 104 MGVAEIFGPGTP 115 (132)
T ss_pred CCCCEEECCCCC
Confidence 999864 44443
|
Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2. |
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=88.40 E-value=1.2 Score=52.10 Aligned_cols=74 Identities=9% Similarity=-0.014 Sum_probs=51.9
Q ss_pred HHHHHHHHHcCCCEEEEecCC-CCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHc
Q 000266 1167 GVIASGVVKGHADHVLISGHD-GGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALL 1245 (1760)
Q Consensus 1167 g~iA~~aakaGAD~IvIsG~~-GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaL 1245 (1760)
-+.+..+.+.|+..|++.--+ =||. .| |-...+.++.+. .++|||++||+++-.|+.++..+
T Consensus 147 ~e~~~~~~~~g~~~ii~tdI~rdGt~---------~G-~d~el~~~l~~~-------~~~pviasGGv~s~~Dl~~l~~~ 209 (241)
T PRK14114 147 VSLLKRLKEYGLEEIVHTEIEKDGTL---------QE-HDFSLTRKIAIE-------AEVKVFAAGGISSENSLKTAQRV 209 (241)
T ss_pred HHHHHHHHhcCCCEEEEEeechhhcC---------CC-cCHHHHHHHHHH-------CCCCEEEECCCCCHHHHHHHHhc
Confidence 345566778888888775321 1221 12 334455555544 25899999999999999999998
Q ss_pred -----C-CCccccchhHH
Q 000266 1246 -----G-AEEFGFSTAPL 1257 (1760)
Q Consensus 1246 -----G-AdaVg~GTa~L 1257 (1760)
| +++|-+|+++.
T Consensus 210 ~~~~~g~v~gvivg~Al~ 227 (241)
T PRK14114 210 HRETNGLLKGVIVGRAFL 227 (241)
T ss_pred ccccCCcEEEEEEehHHH
Confidence 6 99999999854
|
|
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=88.23 E-value=1.3 Score=51.34 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=31.6
Q ss_pred ceEEEEcCCcCCHHHHHHHHHcCCCccccchhHH
Q 000266 1224 RTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1224 rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L 1257 (1760)
.+||+++|||+|-.|+.+.+.+||+.|-+||+++
T Consensus 73 ~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~ 106 (228)
T PRK04128 73 GLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF 106 (228)
T ss_pred CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc
Confidence 5899999999999999999999999999999744
|
|
| >TIGR00693 thiE thiamine-phosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=88.18 E-value=1.3 Score=49.45 Aligned_cols=76 Identities=18% Similarity=0.000 Sum_probs=48.8
Q ss_pred HHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCcc
Q 000266 1171 SGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEF 1250 (1760)
Q Consensus 1171 ~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaV 1250 (1760)
..+.+.|+|+|.++-. --|+.-+. .....| ...+.++.+.. .++||++.||| +..++..++.+||++|
T Consensus 110 ~~a~~~g~dyi~~~~v-~~t~~k~~-~~~~~g---~~~l~~~~~~~------~~~pv~a~GGI-~~~~~~~~~~~G~~gv 177 (196)
T TIGR00693 110 AEAEAEGADYIGFGPI-FPTPTKKD-PAPPAG---VELLREIAATS------IDIPIVAIGGI-TLENAAEVLAAGADGV 177 (196)
T ss_pred HHHhHcCCCEEEECCc-cCCCCCCC-CCCCCC---HHHHHHHHHhc------CCCCEEEECCc-CHHHHHHHHHcCCCEE
Confidence 3477899999998542 11111000 000012 23444444331 14899999999 6899999999999999
Q ss_pred ccchhHHH
Q 000266 1251 GFSTAPLI 1258 (1760)
Q Consensus 1251 g~GTa~L~ 1258 (1760)
.+|++++-
T Consensus 178 a~~~~i~~ 185 (196)
T TIGR00693 178 AVVSAIMQ 185 (196)
T ss_pred EEhHHhhC
Confidence 99998663
|
This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI. |
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=88.11 E-value=1 Score=52.18 Aligned_cols=75 Identities=19% Similarity=0.139 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHcCCCEEEE---ecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHH
Q 000266 1165 GVGVIASGVVKGHADHVLI---SGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAI 1241 (1760)
Q Consensus 1165 Gvg~iA~~aakaGAD~IvI---sG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaK 1241 (1760)
....+|....+.|||-|.| ++..-|. + +....+.++.+.. .+||+++||||+-.|+.+
T Consensus 30 dP~~~a~~~~~~g~~~l~ivDLdaa~~g~-----------~-~n~~~i~~i~~~~-------~~~i~vgGGIrs~ed~~~ 90 (229)
T PF00977_consen 30 DPVEVAKAFNEQGADELHIVDLDAAKEGR-----------G-SNLELIKEIAKET-------GIPIQVGGGIRSIEDAER 90 (229)
T ss_dssp CHHHHHHHHHHTT-SEEEEEEHHHHCCTH-----------H-HHHHHHHHHHHHS-------SSEEEEESSE-SHHHHHH
T ss_pred CHHHHHHHHHHcCCCEEEEEEccCcccCc-----------h-hHHHHHHHHHhcC-------CccEEEeCccCcHHHHHH
Confidence 3445777778889998765 4442111 0 1223445554431 389999999999999999
Q ss_pred HHHcCCCccccchhHHH
Q 000266 1242 AALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1242 AlaLGAdaVg~GTa~L~ 1258 (1760)
.+.+||+.|-+||.++-
T Consensus 91 ll~~Ga~~Vvigt~~~~ 107 (229)
T PF00977_consen 91 LLDAGADRVVIGTEALE 107 (229)
T ss_dssp HHHTT-SEEEESHHHHH
T ss_pred HHHhCCCEEEeChHHhh
Confidence 99999999999998664
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=88.09 E-value=1.5 Score=50.17 Aligned_cols=74 Identities=16% Similarity=0.091 Sum_probs=52.3
Q ss_pred HHHHHHHHHHcCCCEEEE---ecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHH
Q 000266 1166 VGVIASGVVKGHADHVLI---SGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIA 1242 (1760)
Q Consensus 1166 vg~iA~~aakaGAD~IvI---sG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKA 1242 (1760)
...+|....+.|||.|.| ++...|.+ .....+.++.+.. .+||+++|||++-.|+.++
T Consensus 30 p~~~a~~~~~~g~~~l~v~dl~~~~~g~~------------~~~~~i~~i~~~~-------~~pi~~ggGI~~~ed~~~~ 90 (230)
T TIGR00007 30 PVEAAKKWEEEGAERIHVVDLDGAKEGGP------------VNLPVIKKIVRET-------GVPVQVGGGIRSLEDVEKL 90 (230)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCccccCCC------------CcHHHHHHHHHhc-------CCCEEEeCCcCCHHHHHHH
Confidence 445677788889998866 34322211 1123445554431 4799999999999999999
Q ss_pred HHcCCCccccchhHHH
Q 000266 1243 ALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1243 laLGAdaVg~GTa~L~ 1258 (1760)
+.+||+.|-+|+..+-
T Consensus 91 ~~~Ga~~vvlgs~~l~ 106 (230)
T TIGR00007 91 LDLGVDRVIIGTAAVE 106 (230)
T ss_pred HHcCCCEEEEChHHhh
Confidence 9999999999987553
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=88.03 E-value=8.4 Score=47.87 Aligned_cols=136 Identities=15% Similarity=0.182 Sum_probs=95.7
Q ss_pred CCccCHHHHHHHHhccCCCCeeEEEEEEeeCCCChhhHHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCccccHHHHH
Q 000266 688 GPLLSIEEMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRVAVSSLLAV 767 (1760)
Q Consensus 688 sPiL~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~l~~al~~l~~~a~~av~~G~~iliLsDr~~~~~~~~ip~lLav 767 (1760)
.|-++.+++++|++.-.-.+-.+-+ . --+.|..|++.|+..|++|-.+...-...+|++.++
T Consensus 220 d~~~~w~~i~~ir~~~~~pviiKgV---~---------------~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L 281 (361)
T cd04736 220 DASFNWQDLRWLRDLWPHKLLVKGI---V---------------TAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEAL 281 (361)
T ss_pred CCcCCHHHHHHHHHhCCCCEEEecC---C---------------CHHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHH
Confidence 4778999999998842111111111 1 126788899999999999987644333445566666
Q ss_pred HHHHHHHHHcCCCCceeEEEeeCCCCcHHHHHHHHhcCcccc---cHHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Q 000266 768 GAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAI---CPYLATEAIWRLQVDGKIPPKASGEFHSKDELVKK 844 (1760)
Q Consensus 768 ~avh~~Li~~~~R~~~~lvvesge~re~Hh~a~L~GyGA~av---~Pyla~e~~~~~~~~~~~~~~~~~~~~~~~~~~~n 844 (1760)
..+.+.. + +-||+ .|-+|.--|++-.|-+||++| .|+|- .|.. ..++.+..
T Consensus 282 ~ei~~~~---~----~~vi~-dGGIr~g~Dv~KALaLGA~aV~iGr~~l~-----~la~-------------~G~~gv~~ 335 (361)
T cd04736 282 AEIVAAT---Y----KPVLI-DSGIRRGSDIVKALALGANAVLLGRATLY-----GLAA-------------RGEAGVSE 335 (361)
T ss_pred HHHHHHh---C----CeEEE-eCCCCCHHHHHHHHHcCCCEEEECHHHHH-----HHHh-------------cCHHHHHH
Confidence 6665543 2 55676 578999999999999999998 56653 1111 24567788
Q ss_pred HHHHHHHHHHHHHHhhchhhhhc
Q 000266 845 YFKASNYGMMKVLAKMGISTLAS 867 (1760)
Q Consensus 845 y~~a~~~GllKvmsKMGIstl~S 867 (1760)
+.+-+..-|--.|.-+|+++|+.
T Consensus 336 ~l~~l~~el~~~m~l~G~~~i~~ 358 (361)
T cd04736 336 VLRLLKEEIDRTLALIGCPDIAS 358 (361)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHH
Confidence 88889999999999999999875
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=87.89 E-value=1.4 Score=52.00 Aligned_cols=102 Identities=19% Similarity=0.133 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHH
Q 000266 1136 SIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQT 1215 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~ 1215 (1760)
+.+.|..++...+.. +.-+.|-.- .-.. ...+.++|+++|-|.+.+=.|-. +-.. .-.+....
T Consensus 143 ~~~~l~~l~~~a~~l--Gle~lVEVh---~~~E-l~~al~~~a~iiGINnRdL~tf~----------vd~~-~~~~l~~~ 205 (254)
T PF00218_consen 143 SDDQLEELLELAHSL--GLEALVEVH---NEEE-LERALEAGADIIGINNRDLKTFE----------VDLN-RTEELAPL 205 (254)
T ss_dssp GHHHHHHHHHHHHHT--T-EEEEEES---SHHH-HHHHHHTT-SEEEEESBCTTTCC----------BHTH-HHHHHHCH
T ss_pred CHHHHHHHHHHHHHc--CCCeEEEEC---CHHH-HHHHHHcCCCEEEEeCccccCcc----------cChH-HHHHHHhh
Confidence 446667777776665 555555432 2223 35577999999999887654421 1111 11122222
Q ss_pred HHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHH
Q 000266 1216 LVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLIT 1259 (1760)
Q Consensus 1216 L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~A 1259 (1760)
+..++.+++.+||.|..|+.....+|+|+|-+|+++|-+
T Consensus 206 -----ip~~~~~iseSGI~~~~d~~~l~~~G~davLVGe~lm~~ 244 (254)
T PF00218_consen 206 -----IPKDVIVISESGIKTPEDARRLARAGADAVLVGEALMRS 244 (254)
T ss_dssp -----SHTTSEEEEESS-SSHHHHHHHCTTT-SEEEESHHHHTS
T ss_pred -----CccceeEEeecCCCCHHHHHHHHHCCCCEEEECHHHhCC
Confidence 234689999999999999999999999999999998863
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=87.88 E-value=4.8 Score=45.61 Aligned_cols=106 Identities=19% Similarity=0.212 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecC-CCCCCCCccccccccCCCHHHHHHHHHHHHH
Q 000266 1139 DLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGH-DGGTGASRWTGIKNAGLPWELGLAETHQTLV 1217 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~-~GGTGas~~~si~~~GlP~~~~Laev~q~L~ 1217 (1760)
+....+..+|.. +..+++-+.+...... +. ....++|+|.+... .|+||.. + .. -...-+.++.+...
T Consensus 97 ~~~~~~~~~~~~--~~~~g~~~~~~t~~e~-~~-~~~~~~d~i~~~~~~~g~tg~~-~---~~---~~~~~i~~~~~~~~ 165 (220)
T PRK05581 97 HIHRLLQLIKSA--GIKAGLVLNPATPLEP-LE-DVLDLLDLVLLMSVNPGFGGQK-F---IP---EVLEKIRELRKLID 165 (220)
T ss_pred hHHHHHHHHHHc--CCEEEEEECCCCCHHH-HH-HHHhhCCEEEEEEECCCCCccc-c---cH---HHHHHHHHHHHHHH
Confidence 345567777765 5556554422222222 22 33456898877653 5555431 1 00 11223333433322
Q ss_pred hCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000266 1218 ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1218 ~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
..++ .++|.++|||+. .++.+++..|||.|-+|++++-
T Consensus 166 ~~~~--~~~i~v~GGI~~-~nv~~l~~~GaD~vvvgSai~~ 203 (220)
T PRK05581 166 ERGL--DILIEVDGGINA-DNIKECAEAGADVFVAGSAVFG 203 (220)
T ss_pred hcCC--CceEEEECCCCH-HHHHHHHHcCCCEEEEChhhhC
Confidence 1111 256789999999 7999998899999999998653
|
|
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=87.77 E-value=3.8 Score=52.24 Aligned_cols=100 Identities=12% Similarity=0.027 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHH
Q 000266 1137 IEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTL 1216 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L 1216 (1760)
.++|.+++...+.. +.-..|-. ..- .-+..+.++||++|=|.+.+=.|-- +- +..+.+.+
T Consensus 145 ~~~l~~l~~~a~~l--Gl~~lvEv---h~~-~El~~al~~~a~iiGiNnRdL~t~~--------vd------~~~~~~l~ 204 (454)
T PRK09427 145 DEQYRQLAAVAHSL--NMGVLTEV---SNE-EELERAIALGAKVIGINNRNLRDLS--------ID------LNRTRELA 204 (454)
T ss_pred HHHHHHHHHHHHHc--CCcEEEEE---CCH-HHHHHHHhCCCCEEEEeCCCCccce--------EC------HHHHHHHH
Confidence 45677777777665 44444442 122 3345588999999988776433310 11 11122222
Q ss_pred HhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHH
Q 000266 1217 VANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLIT 1259 (1760)
Q Consensus 1217 ~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~A 1259 (1760)
.. +..++.+++-+||+|..|+..+. -|||+|-+|+++|-+
T Consensus 205 ~~--ip~~~~~vseSGI~t~~d~~~~~-~~~davLiG~~lm~~ 244 (454)
T PRK09427 205 PL--IPADVIVISESGIYTHAQVRELS-PFANGFLIGSSLMAE 244 (454)
T ss_pred hh--CCCCcEEEEeCCCCCHHHHHHHH-hcCCEEEECHHHcCC
Confidence 21 34578899999999999998865 489999999998874
|
|
| >PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=87.42 E-value=2.1 Score=50.04 Aligned_cols=65 Identities=14% Similarity=0.055 Sum_probs=46.2
Q ss_pred HcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCce-EEEEcCCcCCHHHHHHHHHcCCCccccc
Q 000266 1175 KGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRT-ILQTDGQLKTGRDVAIAALLGAEEFGFS 1253 (1760)
Q Consensus 1175 kaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV-~LiadGGIrtG~DVaKAlaLGAdaVg~G 1253 (1760)
-.|...+.+... +++|.. +....+.++.+.+ .+ ||++.|||++..++.+++..|||.|.+|
T Consensus 152 ~~g~~~vYle~g-s~~g~~----------~~~e~I~~v~~~~-------~~~pvivGGGIrs~e~a~~~l~~GAD~VVVG 213 (232)
T PRK04169 152 YLGMPIVYLEYG-GGAGDP----------VPPEMVKAVKKAL-------DITPLIYGGGIRSPEQARELMAAGADTIVVG 213 (232)
T ss_pred HcCCCeEEEECC-CCCCCC----------CCHHHHHHHHHhc-------CCCcEEEECCCCCHHHHHHHHHhCCCEEEEC
Confidence 357777777543 222211 2234556665542 35 9999999999999999999999999999
Q ss_pred hhHH
Q 000266 1254 TAPL 1257 (1760)
Q Consensus 1254 Ta~L 1257 (1760)
|++.
T Consensus 214 Sai~ 217 (232)
T PRK04169 214 NIIE 217 (232)
T ss_pred hHHh
Confidence 9865
|
|
| >cd02812 PcrB_like PcrB_like proteins | Back alignment and domain information |
|---|
Probab=87.35 E-value=1.9 Score=49.91 Aligned_cols=69 Identities=20% Similarity=0.196 Sum_probs=49.8
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCC
Q 000266 1169 IASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAE 1248 (1760)
Q Consensus 1169 iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAd 1248 (1760)
-|..+...|..+|.++ ..|.. + + ...+..+.+.+ ..++|++.|||||..++.+++.+|||
T Consensus 140 yA~aae~~g~~ivyLe-~SG~~-----------~-~-~e~I~~v~~~~------~~~pl~vGGGIrs~e~a~~l~~aGAD 199 (219)
T cd02812 140 YALAAEYLGMPIVYLE-YSGAY-----------G-P-PEVVRAVKKVL------GDTPLIVGGGIRSGEQAKEMAEAGAD 199 (219)
T ss_pred HHHHHHHcCCeEEEeC-CCCCc-----------C-C-HHHHHHHHHhc------CCCCEEEeCCCCCHHHHHHHHHcCCC
Confidence 3555778898888898 22211 1 1 23344444431 14899999999999999999999999
Q ss_pred ccccchhHH
Q 000266 1249 EFGFSTAPL 1257 (1760)
Q Consensus 1249 aVg~GTa~L 1257 (1760)
.|-+||++.
T Consensus 200 ~VVVGsai~ 208 (219)
T cd02812 200 TIVVGNIVE 208 (219)
T ss_pred EEEECchhh
Confidence 999999754
|
One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown. |
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=87.21 E-value=6.6 Score=48.09 Aligned_cols=117 Identities=15% Similarity=0.150 Sum_probs=79.5
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCc-------------------cccHHHHHHHHHHHHHHcCCCCceeEEEeeCCCCc
Q 000266 734 AEARDAIKEGYTLLVLSDRAFSSKRV-------------------AVSSLLAVGAVHHHLVKNLERTRIGLIVESAEPRE 794 (1760)
Q Consensus 734 ~~a~~av~~G~~iliLsDr~~~~~~~-------------------~ip~lLav~avh~~Li~~~~R~~~~lvvesge~re 794 (1760)
+.|....+.|+..|++|=++ +...+ .+|..-++-.+ +. ++.++-||+ +|-+|+
T Consensus 194 ~~a~~L~~aGvd~I~Vsg~g-Gt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~-----~~-~~~~ipVIa-sGGI~~ 265 (333)
T TIGR02151 194 EVAKLLADAGVSAIDVAGAG-GTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEV-----RS-DAPDAPIIA-SGGLRT 265 (333)
T ss_pred HHHHHHHHcCCCEEEECCCC-CCcccchhhhcccccccchhhhcccHhHHHHHHHH-----Hh-cCCCCeEEE-ECCCCC
Confidence 45556667899999998753 21111 22322222222 11 345677666 899999
Q ss_pred HHHHHHHHhcCcccccHHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhhhcccccch
Q 000266 795 VHHFCTLVGFGADAICPYLATEAIWRLQVDGKIPPKASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQI 873 (1760)
Q Consensus 795 ~Hh~a~L~GyGA~av~Pyla~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~a~~~GllKvmsKMGIstl~SY~gaqi 873 (1760)
.-|++-.|-.|||+|- ++...+..+.. ...+.+.+|+..+...|-++|..+|.++++..++..+
T Consensus 266 ~~di~kaLalGAd~V~--igr~~L~~~~~-------------~g~~~v~~~i~~~~~eL~~~m~~~G~~~i~el~~~~~ 329 (333)
T TIGR02151 266 GLDVAKAIALGADAVG--MARPFLKAALD-------------EGEEAVIEEIELIIEELKVAMFLTGAKTIAELKKVPL 329 (333)
T ss_pred HHHHHHHHHhCCCeeh--hhHHHHHHHHh-------------cCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHccCCe
Confidence 9999999999999994 12222222211 1357788999999999999999999999999877664
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=87.15 E-value=4.7 Score=47.57 Aligned_cols=102 Identities=11% Similarity=0.016 Sum_probs=67.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHH
Q 000266 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQ 1214 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q 1214 (1760)
.+.++|..++...+.. +.-+.|-. . .- .-+..+.++||++|-|.+.+=.|-- +. +..+.+
T Consensus 135 L~~~~l~~l~~~a~~l--Gle~LVEV-h--~~-~El~~a~~~ga~iiGINnRdL~t~~--------vd------~~~~~~ 194 (247)
T PRK13957 135 LTPSQIKSFLKHASSL--GMDVLVEV-H--TE-DEAKLALDCGAEIIGINTRDLDTFQ--------IH------QNLVEE 194 (247)
T ss_pred CCHHHHHHHHHHHHHc--CCceEEEE-C--CH-HHHHHHHhCCCCEEEEeCCCCccce--------EC------HHHHHH
Confidence 4456788887777665 44444443 1 11 2345588999999988776543311 11 111222
Q ss_pred HHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHH
Q 000266 1215 TLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLIT 1259 (1760)
Q Consensus 1215 ~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~A 1259 (1760)
.+.. +...+.+|+.+||+|..|+.....+ ||+|-+|+++|-+
T Consensus 195 L~~~--ip~~~~~IsESGI~t~~d~~~l~~~-~davLvG~~lm~~ 236 (247)
T PRK13957 195 VAAF--LPPNIVKVGESGIESRSDLDKFRKL-VDAALIGTYFMEK 236 (247)
T ss_pred HHhh--CCCCcEEEEcCCCCCHHHHHHHHHh-CCEEEECHHHhCC
Confidence 2211 3456789999999999999998876 9999999998864
|
|
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=86.98 E-value=5.2 Score=48.84 Aligned_cols=95 Identities=17% Similarity=0.104 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEccc--cCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHH
Q 000266 1135 YSIEDLAQLIYDLKNANPGARISVKLVSE--AGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAET 1212 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~--~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev 1212 (1760)
++++++.+.|..+|. ++.|-.... ......+..+.++|+|+|.|+-..|.. . .+...+.++
T Consensus 67 ~~~~~~~~~i~~vk~-----~l~v~~~~~~~~~~~~~~~~l~eagv~~I~vd~~~G~~--------~----~~~~~i~~i 129 (325)
T cd00381 67 MSIEEQAEEVRKVKG-----RLLVGAAVGTREDDKERAEALVEAGVDVIVIDSAHGHS--------V----YVIEMIKFI 129 (325)
T ss_pred CCHHHHHHHHHHhcc-----CceEEEecCCChhHHHHHHHHHhcCCCEEEEECCCCCc--------H----HHHHHHHHH
Confidence 567888777777763 222322111 122345677889999999998653321 0 122333344
Q ss_pred HHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccc
Q 000266 1213 HQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFS 1253 (1760)
Q Consensus 1213 ~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~G 1253 (1760)
++. . .+++|++ |.+.|..++.+++.+|||.+-+|
T Consensus 130 k~~----~--p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 130 KKK----Y--PNVDVIA-GNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred HHH----C--CCceEEE-CCCCCHHHHHHHHhcCCCEEEEC
Confidence 332 1 2477877 99999999999999999998764
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=86.90 E-value=1.5 Score=51.12 Aligned_cols=72 Identities=13% Similarity=0.041 Sum_probs=47.6
Q ss_pred HHHHHHHHcCCCEEEEecCCC-CCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC
Q 000266 1168 VIASGVVKGHADHVLISGHDG-GTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG 1246 (1760)
Q Consensus 1168 ~iA~~aakaGAD~IvIsG~~G-GTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG 1246 (1760)
..+..+.+.|+.-|++..-+- ||. .|+.. ..+..+.+. ..+++++||+++-.|+.++..+|
T Consensus 150 e~~~~l~~~g~~~ii~tdI~~dGt~---------~G~d~-el~~~~~~~--------~~~viasGGv~s~~Dl~~l~~~G 211 (232)
T PRK13586 150 DGIKKVNELELLGIIFTYISNEGTT---------KGIDY-NVKDYARLI--------RGLKEYAGGVSSDADLEYLKNVG 211 (232)
T ss_pred HHHHHHHhcCCCEEEEecccccccC---------cCcCH-HHHHHHHhC--------CCCEEEECCCCCHHHHHHHHHCC
Confidence 445556677887766643211 221 23333 334444322 12489999999999999999999
Q ss_pred CCccccchhHH
Q 000266 1247 AEEFGFSTAPL 1257 (1760)
Q Consensus 1247 AdaVg~GTa~L 1257 (1760)
+++|-+|+++.
T Consensus 212 ~~gvivg~Aly 222 (232)
T PRK13586 212 FDYIIVGMAFY 222 (232)
T ss_pred CCEEEEehhhh
Confidence 99999999854
|
|
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=86.87 E-value=1.5 Score=51.41 Aligned_cols=73 Identities=18% Similarity=0.128 Sum_probs=48.5
Q ss_pred HHHHHHHHcCCCEEEEecCCC-CCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHH---
Q 000266 1168 VIASGVVKGHADHVLISGHDG-GTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAA--- 1243 (1760)
Q Consensus 1168 ~iA~~aakaGAD~IvIsG~~G-GTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAl--- 1243 (1760)
..+..+.+.|+..|++.--+- ||.. | |-...+.++.+. .++|||++||+++-.|+.+.-
T Consensus 153 ~~~~~~~~~g~~~ii~tdI~~dGt~~---------G-~d~~l~~~l~~~-------~~~pviasGGv~s~eDl~~l~~l~ 215 (243)
T TIGR01919 153 VLERLLDSGGCSRVVVTDSKKDGLSG---------G-PNELLLEVVAAR-------TDAIVAASGGSSLLDDLRAIKYLD 215 (243)
T ss_pred HHHHHHHhCCCCEEEEEecCCcccCC---------C-cCHHHHHHHHhh-------CCCCEEEECCcCCHHHHHHHHhhc
Confidence 344556677887777643211 2321 3 223344444443 258999999999999999875
Q ss_pred HcCCCccccchhHH
Q 000266 1244 LLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1244 aLGAdaVg~GTa~L 1257 (1760)
.+|+++|-+|+++.
T Consensus 216 ~~Gv~gvivg~Al~ 229 (243)
T TIGR01919 216 EGGVSVAIGGKLLY 229 (243)
T ss_pred cCCeeEEEEhHHHH
Confidence 35999999999854
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P) | Back alignment and domain information |
|---|
Probab=86.76 E-value=2.1 Score=49.88 Aligned_cols=65 Identities=15% Similarity=0.095 Sum_probs=43.1
Q ss_pred HcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccch
Q 000266 1175 KGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFST 1254 (1760)
Q Consensus 1175 kaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GT 1254 (1760)
=.|..+|-+....|.- |.+.. .+..+.+.+ .+++||..|||||++.+.+++..|||.|.+||
T Consensus 151 ~~g~~~iYLEaGSGa~-----------~~v~~-~v~~~~~~~------~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn 212 (230)
T PF01884_consen 151 YLGMPIIYLEAGSGAY-----------GPVPE-EVIAAVKKL------SDIPLIVGGGIRSPEQAREMAEAGADTIVVGN 212 (230)
T ss_dssp HTT-SEEEEE--TTSS-----------S-HHH-HHHHHHHHS------SSSEEEEESS--SHHHHHHHHCTTSSEEEESC
T ss_pred HhCCCEEEEEeCCCCC-----------CCccH-HHHHHHHhc------CCccEEEeCCcCCHHHHHHHHHCCCCEEEECC
Confidence 4789999997643421 11212 223333332 36999999999999999999999999999999
Q ss_pred hHH
Q 000266 1255 APL 1257 (1760)
Q Consensus 1255 a~L 1257 (1760)
++-
T Consensus 213 ~ie 215 (230)
T PF01884_consen 213 AIE 215 (230)
T ss_dssp HHH
T ss_pred EEE
Confidence 754
|
This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B. |
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=86.60 E-value=4 Score=54.42 Aligned_cols=101 Identities=12% Similarity=0.045 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHH
Q 000266 1137 IEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTL 1216 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L 1216 (1760)
.++|..++...+.. +.-+.|-. . . ..-...+.++||++|=|.+.+=-| +-+- +..+.+.+
T Consensus 146 ~~~l~~l~~~a~~l--Gme~LvEv-h--~-~~el~~a~~~ga~iiGINnRdL~t----------f~vd----~~~t~~L~ 205 (695)
T PRK13802 146 DAQLKHLLDLAHEL--GMTVLVET-H--T-REEIERAIAAGAKVIGINARNLKD----------LKVD----VNKYNELA 205 (695)
T ss_pred HHHHHHHHHHHHHc--CCeEEEEe-C--C-HHHHHHHHhCCCCEEEEeCCCCcc----------ceeC----HHHHHHHH
Confidence 45677777777665 45555543 1 1 123456889999999887764322 1111 12222222
Q ss_pred HhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHH
Q 000266 1217 VANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLIT 1259 (1760)
Q Consensus 1217 ~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~A 1259 (1760)
.. +...+.+|+.+||+|..|+..+..+|||+|-+|+++|-+
T Consensus 206 ~~--ip~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~ 246 (695)
T PRK13802 206 AD--LPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATA 246 (695)
T ss_pred hh--CCCCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCC
Confidence 22 345688999999999999999999999999999998875
|
|
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=86.42 E-value=1.9 Score=50.23 Aligned_cols=75 Identities=17% Similarity=0.126 Sum_probs=51.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC
Q 000266 1167 GVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG 1246 (1760)
Q Consensus 1167 g~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG 1246 (1760)
...|+...+.|||-+.|---+|-.+.. +-...+.++.+.. -.||+++|||||-.|+-+++.+|
T Consensus 33 ~~~a~~~~~~ga~~lhivDLd~a~~~~----------~n~~~i~~i~~~~-------~~~v~vGGGIrs~e~~~~~l~~G 95 (232)
T PRK13586 33 IEIASKLYNEGYTRIHVVDLDAAEGVG----------NNEMYIKEISKIG-------FDWIQVGGGIRDIEKAKRLLSLD 95 (232)
T ss_pred HHHHHHHHHCCCCEEEEEECCCcCCCc----------chHHHHHHHHhhC-------CCCEEEeCCcCCHHHHHHHHHCC
Confidence 456777778999988663332211111 1223444444421 14899999999999999999999
Q ss_pred CCccccchhHHH
Q 000266 1247 AEEFGFSTAPLI 1258 (1760)
Q Consensus 1247 AdaVg~GTa~L~ 1258 (1760)
|+.|-+||.++-
T Consensus 96 a~kvvigt~a~~ 107 (232)
T PRK13586 96 VNALVFSTIVFT 107 (232)
T ss_pred CCEEEECchhhC
Confidence 999999997553
|
|
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=86.34 E-value=2.3 Score=49.86 Aligned_cols=72 Identities=21% Similarity=0.176 Sum_probs=50.0
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCC
Q 000266 1169 IASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAE 1248 (1760)
Q Consensus 1169 iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAd 1248 (1760)
.|....+.|++.+.|.=-+|-.|.. +-...+.++.+.+ .+||+++|||||-.|+-..+.+||+
T Consensus 36 ~a~~~~~~g~~~lhivDLd~a~g~~----------~n~~~i~~i~~~~-------~~~v~vgGGIrs~e~~~~~l~~Ga~ 98 (243)
T TIGR01919 36 AAKWWEQGGAEWIHLVDLDAAFGGG----------NNEMMLEEVVKLL-------VVVEELSGGRRDDSSLRAALTGGRA 98 (243)
T ss_pred HHHHHHhCCCeEEEEEECCCCCCCc----------chHHHHHHHHHHC-------CCCEEEcCCCCCHHHHHHHHHcCCC
Confidence 3444567788877664333321111 1234556665542 3899999999999999999999999
Q ss_pred ccccchhHH
Q 000266 1249 EFGFSTAPL 1257 (1760)
Q Consensus 1249 aVg~GTa~L 1257 (1760)
.|-+||.++
T Consensus 99 ~vvigT~a~ 107 (243)
T TIGR01919 99 RVNGGTAAL 107 (243)
T ss_pred EEEECchhh
Confidence 999999755
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=86.33 E-value=4.2 Score=49.73 Aligned_cols=98 Identities=13% Similarity=0.172 Sum_probs=60.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCceEEEEccccCHH----HHHHHHHHcC--CCEEEEecCCCCCCCCccccccccCCCH
Q 000266 1132 HDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVG----VIASGVVKGH--ADHVLISGHDGGTGASRWTGIKNAGLPW 1205 (1760)
Q Consensus 1132 hDiySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg----~iA~~aakaG--AD~IvIsG~~GGTGas~~~si~~~GlP~ 1205 (1760)
|-.|++|+++.++...+... ...+.|- +|+. .-+..+.+++ +|+|+||-..|-. . -.
T Consensus 75 Hk~~~~e~~~~~v~~~~~~~-~~~~~vs----vG~~~~d~er~~~L~~a~~~~d~iviD~AhGhs--------~----~~ 137 (343)
T TIGR01305 75 HKHYSVDEWKAFATNSSPDC-LQNVAVS----SGSSDNDLEKMTSILEAVPQLKFICLDVANGYS--------E----HF 137 (343)
T ss_pred eeCCCHHHHHHHHHhhcccc-cceEEEE----eccCHHHHHHHHHHHhcCCCCCEEEEECCCCcH--------H----HH
Confidence 44578999988887654331 2334442 2332 2345677774 9999998765421 0 01
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccc
Q 000266 1206 ELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFS 1253 (1760)
Q Consensus 1206 ~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~G 1253 (1760)
+..+..+.+.. . . +.+..|-|.|+.++..++..|||+|-+|
T Consensus 138 i~~ik~ir~~~-----p-~-~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 138 VEFVKLVREAF-----P-E-HTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred HHHHHHHHhhC-----C-C-CeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 22233333321 1 1 4667788999999999999999986544
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >PRK08662 nicotinate phosphoribosyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=86.27 E-value=5.9 Score=48.84 Aligned_cols=104 Identities=13% Similarity=0.051 Sum_probs=68.1
Q ss_pred HHHHHHHHHhCC-CCceEEEEccccCHHHHHHHHHHc---CCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHH
Q 000266 1141 AQLIYDLKNANP-GARISVKLVSEAGVGVIASGVVKG---HADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTL 1216 (1760)
Q Consensus 1141 aqlI~~Lk~~~p-~~pV~VKlv~~~Gvg~iA~~aaka---GAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L 1216 (1760)
...+..+++..| ..|+.|-.-.......-|..+.++ |+|+|.+|..+-. .|. ...++..+.+.|
T Consensus 187 ~~A~~~~~~~~p~~~~i~vevdt~~~~~~~Al~~~~~~~~~~d~I~LDn~~~~-----------~g~-l~~~v~~vr~~l 254 (343)
T PRK08662 187 VEAWKAFDEVVPPDVPRIALVDTFKDEREEALRAAEALGDRLDGVRLDTPSSR-----------RGN-FRKIVREVRWTL 254 (343)
T ss_pred HHHHHHHHHHCCCCCCEEEEEEeCCccHHHHHHHHHHhCCcCCEEEcCCCCCC-----------Ccc-HHHHHHHHHHHH
Confidence 345777888777 456666543221111233445555 8999999997520 011 123555566667
Q ss_pred HhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHH
Q 000266 1217 VANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLIT 1259 (1760)
Q Consensus 1217 ~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~A 1259 (1760)
.+.|. .++.|.++||| |...|...... .|.+++|+....+
T Consensus 255 d~~g~-~~v~IeaSGgI-~~~ni~~ya~~-vD~isvGs~~~~a 294 (343)
T PRK08662 255 DIRGY-EHVKIFVSGGL-DPERIRELRDV-VDGFGVGTYISFA 294 (343)
T ss_pred HhcCC-CCeEEEEeCCC-CHHHHHHHHHh-CCEEEcCccccCC
Confidence 66654 35899999999 88888888788 9999999976654
|
|
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=86.13 E-value=3.1 Score=48.29 Aligned_cols=110 Identities=14% Similarity=0.103 Sum_probs=67.3
Q ss_pred HHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCC------------CCC---------cccccc-
Q 000266 1142 QLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGT------------GAS---------RWTGIK- 1199 (1760)
Q Consensus 1142 qlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGT------------Gas---------~~~si~- 1199 (1760)
..|.+||+.+|+.++-+|+.... .......+.++|||.|+|-.-.+.. |.- +...+.
T Consensus 54 ~~v~~lr~~~~~~~lDvHLm~~~-p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~ 132 (228)
T PTZ00170 54 PVVKSLRKHLPNTFLDCHLMVSN-PEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFP 132 (228)
T ss_pred HHHHHHHhcCCCCCEEEEECCCC-HHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHH
Confidence 46888998888999999997542 3445577899999999884331110 000 000000
Q ss_pred ------------------ccCCCHH-HHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhH
Q 000266 1200 ------------------NAGLPWE-LGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAP 1256 (1760)
Q Consensus 1200 ------------------~~GlP~~-~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~ 1256 (1760)
..|.++. ..+.++.+. ++ ....+.|.+||||+. ..+..+...|||.+-+|++.
T Consensus 133 ~l~~~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~-~~--~~~~~~I~VdGGI~~-~ti~~~~~aGad~iVvGsaI 204 (228)
T PTZ00170 133 LIDTDLVDMVLVMTVEPGFGGQSFMHDMMPKVREL-RK--RYPHLNIQVDGGINL-ETIDIAADAGANVIVAGSSI 204 (228)
T ss_pred HHccchhhhHHhhhcccCCCCcEecHHHHHHHHHH-HH--hcccCeEEECCCCCH-HHHHHHHHcCCCEEEEchHH
Confidence 0111111 122333322 22 223478999999976 47778899999999999873
|
|
| >PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=85.86 E-value=7.7 Score=45.34 Aligned_cols=106 Identities=22% Similarity=0.230 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecC-CCCCCCCccccccccCCCHHHHHHHHHHHHH
Q 000266 1139 DLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGH-DGGTGASRWTGIKNAGLPWELGLAETHQTLV 1217 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~-~GGTGas~~~si~~~GlP~~~~Laev~q~L~ 1217 (1760)
++...|..+|+. +...+|-+-+.+.+..+..-+. -+|.|.|=.. .|.+|..- +. ....=+.++++.+.
T Consensus 96 ~~~~~i~~Ik~~--G~kaGlalnP~T~~~~l~~~l~--~vD~VLvMsV~PGf~GQ~f---i~----~~l~KI~~lr~~~~ 164 (229)
T PRK09722 96 QAFRLIDEIRRA--GMKVGLVLNPETPVESIKYYIH--LLDKITVMTVDPGFAGQPF---IP----EMLDKIAELKALRE 164 (229)
T ss_pred hHHHHHHHHHHc--CCCEEEEeCCCCCHHHHHHHHH--hcCEEEEEEEcCCCcchhc---cH----HHHHHHHHHHHHHH
Confidence 356677888877 5677777766666666543333 4798877332 23222211 11 12233455555555
Q ss_pred hCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000266 1218 ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1218 ~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
++++ .+.|.+||||. ..-+.+....|||.+-+|+.+++
T Consensus 165 ~~~~--~~~IeVDGGI~-~~~i~~~~~aGad~~V~Gss~iF 202 (229)
T PRK09722 165 RNGL--EYLIEVDGSCN-QKTYEKLMEAGADVFIVGTSGLF 202 (229)
T ss_pred hcCC--CeEEEEECCCC-HHHHHHHHHcCCCEEEEChHHHc
Confidence 5543 58899999998 45777889999999999987665
|
|
| >PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating) | Back alignment and domain information |
|---|
Probab=85.63 E-value=4.2 Score=49.34 Aligned_cols=99 Identities=14% Similarity=0.059 Sum_probs=61.2
Q ss_pred HHHHHHHHhCCCCceEEEEccccCHHHHHHHHHH------cCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHH
Q 000266 1142 QLIYDLKNANPGARISVKLVSEAGVGVIASGVVK------GHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQT 1215 (1760)
Q Consensus 1142 qlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aak------aGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~ 1215 (1760)
..+..+|+..+..+...|+..++.--.-+..+++ +|||+|.+|+.-- +| .... ....-|.++...
T Consensus 188 ~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~----~~----~~~~-~~~e~l~~av~~ 258 (308)
T PLN02716 188 NAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVV----PL----ENGD-VDVSMLKEAVEL 258 (308)
T ss_pred HHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccCCCCEEEeCCCcc----cc----cccC-CCHHHHHHHHHh
Confidence 4455555421122223344333333455666888 9999999999710 00 0111 122345555554
Q ss_pred HHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000266 1216 LVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1216 L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
+ +.++++.++||| |...|...+..|+|.+.+|..
T Consensus 259 ~-----~~~~~lEaSGGI-t~~ni~~yA~tGVD~Is~Gal 292 (308)
T PLN02716 259 I-----NGRFETEASGNV-TLDTVHKIGQTGVTYISSGAL 292 (308)
T ss_pred h-----CCCceEEEECCC-CHHHHHHHHHcCCCEEEeCcc
Confidence 2 357889999999 688899999999999998874
|
|
| >TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family | Back alignment and domain information |
|---|
Probab=85.52 E-value=6.1 Score=45.65 Aligned_cols=76 Identities=20% Similarity=0.107 Sum_probs=58.0
Q ss_pred HHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccc
Q 000266 1172 GVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFG 1251 (1760)
Q Consensus 1172 ~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg 1251 (1760)
.|+++|||+|.. +=|+ ++++|.+....+.++++.+..++.. .. +....+|+..+|..++.+|+|.|-
T Consensus 117 ~Aa~aGa~yisp--yvgR--------i~d~g~dg~~~v~~~~~~~~~~~~~--tk-IlaAS~r~~~~v~~~~~~G~d~vT 183 (213)
T TIGR00875 117 LAAKAGATYVSP--FVGR--------LDDIGGDGMKLIEEVKTIFENHAPD--TE-VIAASVRHPRHVLEAALIGADIAT 183 (213)
T ss_pred HHHHcCCCEEEe--ecch--------HHHcCCCHHHHHHHHHHHHHHcCCC--CE-EEEeccCCHHHHHHHHHcCCCEEE
Confidence 477889887744 2232 4667777788889999998877664 44 455679999999999999999998
Q ss_pred cchhHHHHh
Q 000266 1252 FSTAPLITL 1260 (1760)
Q Consensus 1252 ~GTa~L~Al 1260 (1760)
++-..+-.+
T Consensus 184 ip~~vl~~l 192 (213)
T TIGR00875 184 MPLDVMQQL 192 (213)
T ss_pred cCHHHHHHH
Confidence 887766654
|
This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth. |
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=85.25 E-value=2.1 Score=55.18 Aligned_cols=66 Identities=14% Similarity=0.297 Sum_probs=46.4
Q ss_pred CcccccccccccCCCCCCCCCCCCcccccc------ceEecCCCcccCcHHHHHHHHHHHHHcCCceeccCCCCCcccc
Q 000266 980 TCNLRGLLKFKEADVKIPLEEVEPASEIVK------RFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRM 1052 (1760)
Q Consensus 980 ~~~~r~ll~~~~~~~~i~~~eVe~~t~i~~------Pf~i~aMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGge~~e~~ 1052 (1760)
.-|+.++| +.+....+..++|+..|.+.+ |++.|+|.+.+ ...||.|+.++|+....+- +.+++..
T Consensus 21 ~ltfddv~-l~p~~~~~~~~~~~~~t~lt~~~~~~~Pivsa~M~~vt-----~~~lA~Ama~aGGiGfI~~-~as~E~q 92 (505)
T PLN02274 21 SYTYDDVI-FHPGYIDFPADAVDLSTRLSRNIPLSIPCVSSPMDTVT-----ESDMAIAMAALGGIGIVHY-NNTAEEQ 92 (505)
T ss_pred CCCccceE-ecccccCcCCcccccccccccccCcCCCEeccCCcccc-----hHHHHHHHHhCCCeEEEcC-CCCHHHH
Confidence 45677776 544445566678887766642 99999997655 3469999999999877763 4555544
|
|
| >COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.22 E-value=7.2 Score=46.22 Aligned_cols=100 Identities=23% Similarity=0.218 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHH
Q 000266 1138 EDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLV 1217 (1760)
Q Consensus 1138 edLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~ 1217 (1760)
+.+.+++...+.. +.-+.|-. ..- .-...|.++|+++|=|.+.+=.| . +.-|..+.+...
T Consensus 143 ~~l~el~~~A~~L--Gm~~LVEV---h~~-eEl~rAl~~ga~iIGINnRdL~t----------f----~vdl~~t~~la~ 202 (254)
T COG0134 143 EQLEELVDRAHEL--GMEVLVEV---HNE-EELERALKLGAKIIGINNRDLTT----------L----EVDLETTEKLAP 202 (254)
T ss_pred HHHHHHHHHHHHc--CCeeEEEE---CCH-HHHHHHHhCCCCEEEEeCCCcch----------h----eecHHHHHHHHh
Confidence 4566666666555 44444443 122 33455778999999776653222 0 011122222222
Q ss_pred hCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHH
Q 000266 1218 ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLIT 1259 (1760)
Q Consensus 1218 ~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~A 1259 (1760)
. ++..+.+|.-+||.|..|+......||++|-+|+++|-+
T Consensus 203 ~--~p~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~~ 242 (254)
T COG0134 203 L--IPKDVILISESGISTPEDVRRLAKAGADAFLVGEALMRA 242 (254)
T ss_pred h--CCCCcEEEecCCCCCHHHHHHHHHcCCCEEEecHHHhcC
Confidence 2 456789999999999999999999999999999998863
|
|
| >PRK08227 autoinducer 2 aldolase; Validated | Back alignment and domain information |
|---|
Probab=85.05 E-value=3.8 Score=48.72 Aligned_cols=91 Identities=14% Similarity=0.049 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEcccc-C-------HHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHH
Q 000266 1136 SIEDLAQLIYDLKNANPGARISVKLVSEA-G-------VGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWEL 1207 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p~~pV~VKlv~~~-G-------vg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~ 1207 (1760)
.++++.+++++..+. +.|+++ ..+.. . |...|..+++.|||+|.+. + |. .
T Consensus 125 ~l~~l~~v~~ea~~~--G~Plla-~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~-y-----------------~~-~ 182 (264)
T PRK08227 125 SIKNIIQLVDAGLRY--GMPVMA-VTAVGKDMVRDARYFSLATRIAAEMGAQIIKTY-Y-----------------VE-E 182 (264)
T ss_pred HHHHHHHHHHHHHHh--CCcEEE-EecCCCCcCchHHHHHHHHHHHHHHcCCEEecC-C-----------------CH-H
Confidence 356777777776554 889887 43311 1 2234455899999999862 1 11 3
Q ss_pred HHHHHHHHHHhCCCCCceEEEEcCCcCCHH-H----HHHHHHcCCCccccchh
Q 000266 1208 GLAETHQTLVANDLRGRTILQTDGQLKTGR-D----VAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1208 ~Laev~q~L~~~glr~rV~LiadGGIrtG~-D----VaKAlaLGAdaVg~GTa 1255 (1760)
.+.++.+.+ .+||+++||=++.. | +..++..||.+|.+||-
T Consensus 183 ~f~~vv~a~-------~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRN 228 (264)
T PRK08227 183 GFERITAGC-------PVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRN 228 (264)
T ss_pred HHHHHHHcC-------CCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechh
Confidence 556666642 58999999998632 2 44688899999999985
|
|
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=84.97 E-value=6.8 Score=43.78 Aligned_cols=91 Identities=18% Similarity=0.113 Sum_probs=62.3
Q ss_pred HHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCC
Q 000266 1142 QLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDL 1221 (1760)
Q Consensus 1142 qlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~gl 1221 (1760)
+.|..+|+..|+.||.+-+......-..+..+.++|||+|++-+..+ | ..+.++.+.++++|
T Consensus 42 ~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~---------------~--~~~~~~i~~~~~~g- 103 (202)
T cd04726 42 EAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAP---------------L--STIKKAVKAAKKYG- 103 (202)
T ss_pred HHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCC---------------H--HHHHHHHHHHHHcC-
Confidence 56788888777889988332111112446779999999999865421 1 12345556665554
Q ss_pred CCceEEEEc-CCcCCHHHHHHHHHcCCCccccc
Q 000266 1222 RGRTILQTD-GQLKTGRDVAIAALLGAEEFGFS 1253 (1760)
Q Consensus 1222 r~rV~Liad-GGIrtG~DVaKAlaLGAdaVg~G 1253 (1760)
+.++++ =+..|..++.+++.+|+|.+.++
T Consensus 104 ---~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 104 ---KEVQVDLIGVEDPEKRAKLLKLGVDIVILH 133 (202)
T ss_pred ---CeEEEEEeCCCCHHHHHHHHHCCCCEEEEc
Confidence 456654 78889999999999999998875
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=84.87 E-value=3.1 Score=48.76 Aligned_cols=72 Identities=11% Similarity=-0.004 Sum_probs=51.2
Q ss_pred HHHHHHHHHHcCCCEEEE---ecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHH
Q 000266 1166 VGVIASGVVKGHADHVLI---SGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIA 1242 (1760)
Q Consensus 1166 vg~iA~~aakaGAD~IvI---sG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKA 1242 (1760)
...+|....+.|||.+.| +|.-.|. . +-...+.++.+. . +||+++|||||-.|+-+.
T Consensus 32 P~~~A~~~~~~ga~~lhivDLd~a~~g~--~----------~n~~~i~~i~~~-----~---~~v~vGGGIrs~e~~~~~ 91 (241)
T PRK14114 32 PAELVEKLIEEGFTLIHVVDLSKAIENS--V----------ENLPVLEKLSEF-----A---EHIQIGGGIRSLDYAEKL 91 (241)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCcccCC--c----------chHHHHHHHHhh-----c---CcEEEecCCCCHHHHHHH
Confidence 345677778899998765 4432111 0 122344555443 1 589999999999999999
Q ss_pred HHcCCCccccchhHH
Q 000266 1243 ALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1243 laLGAdaVg~GTa~L 1257 (1760)
+.+||+.|-+||.++
T Consensus 92 l~~Ga~rvvigT~a~ 106 (241)
T PRK14114 92 RKLGYRRQIVSSKVL 106 (241)
T ss_pred HHCCCCEEEECchhh
Confidence 999999999999754
|
|
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=84.55 E-value=6.9 Score=47.83 Aligned_cols=110 Identities=18% Similarity=0.220 Sum_probs=77.2
Q ss_pred HHHHHHHHcCCcEEEEcCCCC------------CC--------CCccccHHHHHHHHHHHHHHcCCCCceeEEEeeCCCC
Q 000266 734 AEARDAIKEGYTLLVLSDRAF------------SS--------KRVAVSSLLAVGAVHHHLVKNLERTRIGLIVESAEPR 793 (1760)
Q Consensus 734 ~~a~~av~~G~~iliLsDr~~------------~~--------~~~~ip~lLav~avh~~Li~~~~R~~~~lvvesge~r 793 (1760)
+.|....+.|+..|++|=++- .. ....+|..-++-.+..++ .++.||+ +|-+|
T Consensus 193 ~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~------~~ipIia-sGGIr 265 (326)
T cd02811 193 ETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSAL------PDLPLIA-SGGIR 265 (326)
T ss_pred HHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHc------CCCcEEE-ECCCC
Confidence 556666788999999986411 00 111344444443333321 1678777 89999
Q ss_pred cHHHHHHHHhcCcccc---cHHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhhhccc
Q 000266 794 EVHHFCTLVGFGADAI---CPYLATEAIWRLQVDGKIPPKASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYK 869 (1760)
Q Consensus 794 e~Hh~a~L~GyGA~av---~Pyla~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~a~~~GllKvmsKMGIstl~SY~ 869 (1760)
+-.+++-.|-.|||+| -|+|. .+ + ...+.+.+|++.+...|-.+|.-+|.++++..+
T Consensus 266 ~~~dv~kal~lGAd~V~i~~~~L~-----~~-----~---------~g~~~~~~~i~~~~~el~~~m~~~G~~si~el~ 325 (326)
T cd02811 266 NGLDIAKALALGADLVGMAGPFLK-----AA-----L---------EGEEAVIETIEQIIEELRTAMFLTGAKNLAELK 325 (326)
T ss_pred CHHHHHHHHHhCCCEEEEcHHHHH-----HH-----h---------cCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhc
Confidence 9999999999999999 34432 11 1 145778899999999999999999999988643
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=84.31 E-value=2.9 Score=48.28 Aligned_cols=69 Identities=16% Similarity=0.008 Sum_probs=48.3
Q ss_pred HHHHHHHHHcCCCEEEE---ecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHH
Q 000266 1167 GVIASGVVKGHADHVLI---SGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAA 1243 (1760)
Q Consensus 1167 g~iA~~aakaGAD~IvI---sG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAl 1243 (1760)
..+|....+.|||-+.| +|..|.. +-...+.++.+. +||+++|||||-.|+.+.+
T Consensus 39 ~~~a~~~~~~g~~~l~ivDLd~~~~~~-------------~n~~~i~~i~~~---------~~v~vgGGirs~e~~~~~~ 96 (221)
T TIGR00734 39 DDAAKVIEEIGARFIYIADLDRIVGLG-------------DNFSLLSKLSKR---------VELIADCGVRSPEDLETLP 96 (221)
T ss_pred HHHHHHHHHcCCCEEEEEEcccccCCc-------------chHHHHHHHHhh---------CcEEEcCccCCHHHHHHHH
Confidence 35667777889998765 4543221 123344444442 5899999999999999886
Q ss_pred H--cCCCccccchhHH
Q 000266 1244 L--LGAEEFGFSTAPL 1257 (1760)
Q Consensus 1244 a--LGAdaVg~GTa~L 1257 (1760)
. .||+.|-+||.++
T Consensus 97 ~~l~~a~rvvigT~a~ 112 (221)
T TIGR00734 97 FTLEFASRVVVATETL 112 (221)
T ss_pred hhhccceEEeecChhh
Confidence 5 3799999999765
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=84.16 E-value=4.2 Score=46.74 Aligned_cols=67 Identities=10% Similarity=0.046 Sum_probs=47.5
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCC
Q 000266 1169 IASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAE 1248 (1760)
Q Consensus 1169 iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAd 1248 (1760)
.|..+...|++.|.+.-.+|-. . . .+ ...+.++.+.+ ++||++.||||+..++.+++..|||
T Consensus 139 ~a~aa~~~G~~~i~Le~~sGa~---~------~-v~-~e~i~~Vk~~~-------~~Pv~vGGGIrs~e~a~~l~~~GAD 200 (205)
T TIGR01769 139 YCLAAKYFGMKWVYLEAGSGAS---Y------P-VN-PETISLVKKAS-------GIPLIVGGGIRSPEIAYEIVLAGAD 200 (205)
T ss_pred HHHHHHHcCCCEEEEEcCCCCC---C------C-CC-HHHHHHHHHhh-------CCCEEEeCCCCCHHHHHHHHHcCCC
Confidence 4555778999999885433321 0 0 11 23455555542 5899999999999999999999999
Q ss_pred ccccc
Q 000266 1249 EFGFS 1253 (1760)
Q Consensus 1249 aVg~G 1253 (1760)
.|-+|
T Consensus 201 ~VVVG 205 (205)
T TIGR01769 201 AIVTG 205 (205)
T ss_pred EEEeC
Confidence 98776
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm) | Back alignment and domain information |
|---|
Probab=83.90 E-value=7.9 Score=41.51 Aligned_cols=70 Identities=16% Similarity=0.163 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcC-C----HHHH
Q 000266 1165 GVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLK-T----GRDV 1239 (1760)
Q Consensus 1165 Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIr-t----G~DV 1239 (1760)
-...++..|.+.+||+|-+|..-+.+ ...+.++.+.|++.|+++ ++|++-|.+- - ..+.
T Consensus 38 ~~e~~v~aa~~~~adiVglS~L~t~~---------------~~~~~~~~~~l~~~gl~~-v~vivGG~~~i~~~d~~~~~ 101 (128)
T cd02072 38 PQEEFIDAAIETDADAILVSSLYGHG---------------EIDCKGLREKCDEAGLKD-ILLYVGGNLVVGKQDFEDVE 101 (128)
T ss_pred CHHHHHHHHHHcCCCEEEEeccccCC---------------HHHHHHHHHHHHHCCCCC-CeEEEECCCCCChhhhHHHH
Confidence 44577888999999999999875543 346678888999999976 9898888875 3 3344
Q ss_pred HHHHHcCCCcc
Q 000266 1240 AIAALLGAEEF 1250 (1760)
Q Consensus 1240 aKAlaLGAdaV 1250 (1760)
.+..+||.++|
T Consensus 102 ~~L~~~Gv~~v 112 (128)
T cd02072 102 KRFKEMGFDRV 112 (128)
T ss_pred HHHHHcCCCEE
Confidence 67888999875
|
Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains. |
| >PRK02615 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=83.81 E-value=2.9 Score=51.51 Aligned_cols=75 Identities=13% Similarity=-0.017 Sum_probs=49.4
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCc
Q 000266 1170 ASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEE 1249 (1760)
Q Consensus 1170 A~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAda 1249 (1760)
+..+.+.|||+|.++-. .-|..-+. ....| ...+..+.+. -.+|++|-||| +..++...+.+||++
T Consensus 253 ~~~A~~~GaDYI~lGPv-f~T~tKp~--~~~~G---le~l~~~~~~-------~~iPv~AiGGI-~~~ni~~l~~~Ga~g 318 (347)
T PRK02615 253 MAKAIAEGADYIGVGPV-FPTPTKPG--KAPAG---LEYLKYAAKE-------APIPWFAIGGI-DKSNIPEVLQAGAKR 318 (347)
T ss_pred HHHHHHcCCCEEEECCC-cCCCCCCC--CCCCC---HHHHHHHHHh-------CCCCEEEECCC-CHHHHHHHHHcCCcE
Confidence 45577899999988432 32321111 11122 2334333332 25899999999 588999999999999
Q ss_pred cccchhHHH
Q 000266 1250 FGFSTAPLI 1258 (1760)
Q Consensus 1250 Vg~GTa~L~ 1258 (1760)
|.++++++-
T Consensus 319 VAvisaI~~ 327 (347)
T PRK02615 319 VAVVRAIMG 327 (347)
T ss_pred EEEeHHHhC
Confidence 999998763
|
|
| >COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=83.63 E-value=1.3 Score=51.01 Aligned_cols=51 Identities=20% Similarity=0.184 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000266 1202 GLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1202 GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
+.|. ..|.++++. | |--|.-+++|||.|+.|.+-++.||||+|-+|+..+-
T Consensus 192 ~~p~-elv~~~~~~----g-rLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFK 242 (296)
T COG0214 192 QAPY-ELVKEVAKL----G-RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 242 (296)
T ss_pred CChH-HHHHHHHHh----C-CCCeEeecccCcCChhHHHHHHHhCCCeEEecccccC
Confidence 3453 345555543 2 2347778999999999999999999999999987554
|
|
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.49 E-value=9 Score=47.70 Aligned_cols=64 Identities=19% Similarity=0.238 Sum_probs=42.9
Q ss_pred HHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCc--c
Q 000266 1173 VVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEE--F 1250 (1760)
Q Consensus 1173 aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAda--V 1250 (1760)
++++|+|+|++|-..|-. +- .+.-+.-+.+..+ +++| ..|-+-|...+...++.|||+ |
T Consensus 259 l~~aGvdvviLDSSqGnS-------~~-----qiemik~iK~~yP------~l~V-iaGNVVT~~qa~nLI~aGaDgLrV 319 (503)
T KOG2550|consen 259 LVQAGVDVVILDSSQGNS-------IY-----QLEMIKYIKETYP------DLQI-IAGNVVTKEQAANLIAAGADGLRV 319 (503)
T ss_pred hhhcCCcEEEEecCCCcc-------hh-----HHHHHHHHHhhCC------Ccee-eccceeeHHHHHHHHHccCceeEe
Confidence 789999999999875532 11 1222333333322 3444 468888999999999999995 6
Q ss_pred ccchh
Q 000266 1251 GFSTA 1255 (1760)
Q Consensus 1251 g~GTa 1255 (1760)
|||+.
T Consensus 320 GMGsG 324 (503)
T KOG2550|consen 320 GMGSG 324 (503)
T ss_pred ccccC
Confidence 66664
|
|
| >PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=83.31 E-value=7.4 Score=48.78 Aligned_cols=107 Identities=22% Similarity=0.243 Sum_probs=65.3
Q ss_pred HHHHHHHHhCCCCceEEEEccccCHHHH-HHHHHHcCCCEEEEecCCCC-C-----------CC----------Cccccc
Q 000266 1142 QLIYDLKNANPGARISVKLVSEAGVGVI-ASGVVKGHADHVLISGHDGG-T-----------GA----------SRWTGI 1198 (1760)
Q Consensus 1142 qlI~~Lk~~~p~~pV~VKlv~~~Gvg~i-A~~aakaGAD~IvIsG~~GG-T-----------Ga----------s~~~si 1198 (1760)
+.|.+||+..|+.+|.+-+-- ..++.. +..+.++|||.++|.+..+- + |. .+...+
T Consensus 215 ~iVk~Lr~~~~~~~I~~DLK~-~Di~~~vv~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~GikvgVD~lnp~tp~e~i 293 (391)
T PRK13307 215 EVISKIREVRPDAFIVADLKT-LDTGNLEARMAADATADAVVISGLAPISTIEKAIHEAQKTGIYSILDMLNVEDPVKLL 293 (391)
T ss_pred HHHHHHHHhCCCCeEEEEecc-cChhhHHHHHHHhcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEEcCCCCHHHHH
Confidence 468888887677787765532 244433 66789999999999764221 0 00 010000
Q ss_pred c-----------cc-----CC-CHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhH
Q 000266 1199 K-----------NA-----GL-PWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAP 1256 (1760)
Q Consensus 1199 ~-----------~~-----Gl-P~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~ 1256 (1760)
+ +. +. |...-+.++ ++. ..+++|.++|||. ..++..++.+|||.+-+|++.
T Consensus 294 ~~l~~~vD~Vllht~vdp~~~~~~~~kI~~i----kk~--~~~~~I~VdGGI~-~eti~~l~~aGADivVVGsaI 361 (391)
T PRK13307 294 ESLKVKPDVVELHRGIDEEGTEHAWGNIKEI----KKA--GGKILVAVAGGVR-VENVEEALKAGADILVVGRAI 361 (391)
T ss_pred HHhhCCCCEEEEccccCCCcccchHHHHHHH----HHh--CCCCcEEEECCcC-HHHHHHHHHcCCCEEEEeHHH
Confidence 0 11 10 111122222 221 2358899999998 778889999999999999973
|
|
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.13 E-value=4.1 Score=47.78 Aligned_cols=70 Identities=17% Similarity=0.143 Sum_probs=52.6
Q ss_pred HHHHHHHHcCCCEEEE---ecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHH
Q 000266 1168 VIASGVVKGHADHVLI---SGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAAL 1244 (1760)
Q Consensus 1168 ~iA~~aakaGAD~IvI---sG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAla 1244 (1760)
..|..-.+.||..+.+ +|.-.|.. --..++.++.+.+ .++|++-|||||-.++...+.
T Consensus 35 ~~a~~~~~~Ga~~lHlVDLdgA~~g~~------------~n~~~i~~i~~~~-------~~~vQvGGGIRs~~~v~~ll~ 95 (241)
T COG0106 35 EVAKKWSDQGAEWLHLVDLDGAKAGGP------------RNLEAIKEILEAT-------DVPVQVGGGIRSLEDVEALLD 95 (241)
T ss_pred HHHHHHHHcCCcEEEEeeccccccCCc------------ccHHHHHHHHHhC-------CCCEEeeCCcCCHHHHHHHHH
Confidence 4566677888888754 66543321 1134566666653 589999999999999999999
Q ss_pred cCCCccccchhH
Q 000266 1245 LGAEEFGFSTAP 1256 (1760)
Q Consensus 1245 LGAdaVg~GTa~ 1256 (1760)
+|++.|-+||.+
T Consensus 96 ~G~~rViiGt~a 107 (241)
T COG0106 96 AGVARVIIGTAA 107 (241)
T ss_pred CCCCEEEEecce
Confidence 999999999975
|
|
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=82.92 E-value=0.92 Score=52.60 Aligned_cols=35 Identities=17% Similarity=0.095 Sum_probs=32.5
Q ss_pred ceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000266 1224 RTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1224 rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
++|||++||+++..|+.++..+|+++|-+|+++..
T Consensus 182 ~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~ 216 (228)
T PRK04128 182 DEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYE 216 (228)
T ss_pred CCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhc
Confidence 58999999999999999999999999999998643
|
|
| >TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family | Back alignment and domain information |
|---|
Probab=82.58 E-value=5.4 Score=47.36 Aligned_cols=74 Identities=22% Similarity=0.162 Sum_probs=49.9
Q ss_pred cCHHHHHHHHHHc-CCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHH
Q 000266 1164 AGVGVIASGVVKG-HADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIA 1242 (1760)
Q Consensus 1164 ~Gvg~iA~~aaka-GAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKA 1242 (1760)
..+...|..+... ++|+|+|+|.. ||.++ .| .-|.++.+.. ..+|+++.||+ |...|..+
T Consensus 157 ~~~~e~a~~~~~~~~aDavivtG~~--TG~~~---------d~-~~l~~vr~~~------~~~PvllggGv-t~eNv~e~ 217 (257)
T TIGR00259 157 RDLESIALDTVERGLADAVILSGKT--TGTEV---------DL-ELLKLAKETV------KDTPVLAGSGV-NLENVEEL 217 (257)
T ss_pred CCHHHHHHHHHHhcCCCEEEECcCC--CCCCC---------CH-HHHHHHHhcc------CCCeEEEECCC-CHHHHHHH
Confidence 3455666665554 49999999973 33321 12 2344443321 25799999998 78889988
Q ss_pred HHcCCCccccchhHH
Q 000266 1243 ALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1243 laLGAdaVg~GTa~L 1257 (1760)
+.. ||+|-+||.+-
T Consensus 218 l~~-adGviVgS~~K 231 (257)
T TIGR00259 218 LSI-ADGVIVATTIK 231 (257)
T ss_pred Hhh-CCEEEECCCcc
Confidence 887 99999999754
|
Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis. |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.43 E-value=5.6 Score=51.30 Aligned_cols=66 Identities=11% Similarity=0.190 Sum_probs=47.6
Q ss_pred CcccccccccccCCCCCCCCCCCCcccccc------ceEecCCCcccCcHHHHHHHHHHHHHcCCceeccCCCCCcccc
Q 000266 980 TCNLRGLLKFKEADVKIPLEEVEPASEIVK------RFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRM 1052 (1760)
Q Consensus 980 ~~~~r~ll~~~~~~~~i~~~eVe~~t~i~~------Pf~i~aMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGge~~e~~ 1052 (1760)
.-|+.++| +-+....+..++|+..+.+.+ |++.++|..-+ +..||.||++.|+..... +.+++|+.
T Consensus 17 ~lt~ddv~-l~p~~~~~~~~~v~~~t~l~~~~~l~~Pii~a~M~~vt-----~~~ma~a~a~~GglGvi~-~~~~~e~~ 88 (495)
T PTZ00314 17 GLTYDDVI-LLPGYIDFSRDDVDLSTRLTRNIRLKIPIVSSPMDTVT-----EHKMAIAMALMGGIGVIH-NNCSIEEQ 88 (495)
T ss_pred CCCccceE-ecccccccccccccccccccCCcccCCceeecCccccc-----cHHHHHHHHHCCCeEEec-CCCCHHHH
Confidence 45677777 544445666678887776543 99999998533 346999999999998885 45677764
|
|
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=82.01 E-value=15 Score=43.10 Aligned_cols=105 Identities=13% Similarity=0.042 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEe-cCCCCCCCCccccccccCCCHHHHHHHHHHHHH
Q 000266 1139 DLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLIS-GHDGGTGASRWTGIKNAGLPWELGLAETHQTLV 1217 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIs-G~~GGTGas~~~si~~~GlP~~~~Laev~q~L~ 1217 (1760)
++...|..+|+.+-....++-+-+.+.+..+..-+. -+|.|+|= -..|.+|... +. ....=+.++++.+.
T Consensus 104 ~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~--~vD~VLiMtV~PGfgGQ~f---~~----~~l~KI~~lr~~~~ 174 (228)
T PRK08091 104 DLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLD--QIDLIQILTLDPRTGTKAP---SD----LILDRVIQVENRLG 174 (228)
T ss_pred cHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHh--hcCEEEEEEECCCCCCccc---cH----HHHHHHHHHHHHHH
Confidence 466778888887321266777766666666543333 38998773 2223222221 11 12334555666666
Q ss_pred hCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000266 1218 ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1218 ~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
++++ ++.|.+||||. ..-+.+....|||.+-.|++
T Consensus 175 ~~~~--~~~IeVDGGI~-~~ti~~l~~aGaD~~V~GSa 209 (228)
T PRK08091 175 NRRV--EKLISIDGSMT-LELASYLKQHQIDWVVSGSA 209 (228)
T ss_pred hcCC--CceEEEECCCC-HHHHHHHHHCCCCEEEEChh
Confidence 6554 57899999997 55777889999999999987
|
|
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.52 E-value=5.4 Score=46.46 Aligned_cols=71 Identities=18% Similarity=0.071 Sum_probs=48.8
Q ss_pred HHHHHHHHcCCCEEEEecCCC-CCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC
Q 000266 1168 VIASGVVKGHADHVLISGHDG-GTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG 1246 (1760)
Q Consensus 1168 ~iA~~aakaGAD~IvIsG~~G-GTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG 1246 (1760)
..|+.+.+.||-=|.+.-.+. ||. .|.- +..+..+... .+|||||+||.-+..+.+.++..|
T Consensus 159 ~Wa~~~e~~GAGEIlLtsmD~DGtk---------~GyD-l~l~~~v~~~-------v~iPvIASGGaG~~ehf~eaf~~~ 221 (256)
T COG0107 159 EWAKEVEELGAGEILLTSMDRDGTK---------AGYD-LELTRAVREA-------VNIPVIASGGAGKPEHFVEAFTEG 221 (256)
T ss_pred HHHHHHHHcCCceEEEeeecccccc---------cCcC-HHHHHHHHHh-------CCCCEEecCCCCcHHHHHHHHHhc
Confidence 456678888998888865433 221 1211 2234444444 269999999999999999999999
Q ss_pred -CCccccchh
Q 000266 1247 -AEEFGFSTA 1255 (1760)
Q Consensus 1247 -AdaVg~GTa 1255 (1760)
||++--++.
T Consensus 222 ~adAaLAAsi 231 (256)
T COG0107 222 KADAALAASI 231 (256)
T ss_pred CccHHHhhhh
Confidence 998754443
|
|
| >PLN02460 indole-3-glycerol-phosphate synthase | Back alignment and domain information |
|---|
Probab=81.36 E-value=11 Score=46.31 Aligned_cols=103 Identities=15% Similarity=0.089 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHc-CCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHH
Q 000266 1137 IEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKG-HADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQT 1215 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aaka-GAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~ 1215 (1760)
.++|..++...+.. +.-+.|-. ..-.. ...+.++ |+++|=|.+.+=.|= .+- |..+.+.
T Consensus 216 ~~~L~~l~~~A~~L--Gme~LVEV---H~~~E-lerAl~~~ga~iIGINNRdL~Tf--------~vD------l~~t~~L 275 (338)
T PLN02460 216 DLDIKYMLKICKSL--GMAALIEV---HDERE-MDRVLGIEGVELIGINNRSLETF--------EVD------ISNTKKL 275 (338)
T ss_pred HHHHHHHHHHHHHc--CCeEEEEe---CCHHH-HHHHHhcCCCCEEEEeCCCCCcc--------eEC------HHHHHHH
Confidence 45677777766665 44454443 12222 3447777 999998877643330 111 1222222
Q ss_pred HHhC---CC-CCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHH
Q 000266 1216 LVAN---DL-RGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLIT 1259 (1760)
Q Consensus 1216 L~~~---gl-r~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~A 1259 (1760)
+... -+ ...+.+++-+||.|..|+.....+||++|-+|+++|-+
T Consensus 276 ~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~ 323 (338)
T PLN02460 276 LEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQ 323 (338)
T ss_pred hhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCC
Confidence 2200 12 14578999999999999999999999999999998863
|
|
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=81.16 E-value=1.8 Score=49.20 Aligned_cols=72 Identities=14% Similarity=-0.028 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHH
Q 000266 1165 GVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAAL 1244 (1760)
Q Consensus 1165 Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAla 1244 (1760)
....+|....++||++|.|---++-.+.+ + .-+..+.+. .++||+.-|+|++..++-.++.
T Consensus 32 ~~~~~A~~~~~~GA~~l~v~~~~~~~~g~----------~--~~~~~i~~~-------v~iPi~~~~~i~~~~~v~~~~~ 92 (217)
T cd00331 32 DPVEIAKAYEKAGAAAISVLTEPKYFQGS----------L--EDLRAVREA-------VSLPVLRKDFIIDPYQIYEARA 92 (217)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCccccCCC----------H--HHHHHHHHh-------cCCCEEECCeecCHHHHHHHHH
Confidence 35678889999999999885443332221 1 223333332 1589999999999999999999
Q ss_pred cCCCccccchh
Q 000266 1245 LGAEEFGFSTA 1255 (1760)
Q Consensus 1245 LGAdaVg~GTa 1255 (1760)
+|||+|-+++.
T Consensus 93 ~Gad~v~l~~~ 103 (217)
T cd00331 93 AGADAVLLIVA 103 (217)
T ss_pred cCCCEEEEeec
Confidence 99999988875
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=80.99 E-value=2.1 Score=48.25 Aligned_cols=67 Identities=18% Similarity=0.107 Sum_probs=47.8
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCc
Q 000266 1170 ASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEE 1249 (1760)
Q Consensus 1170 A~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAda 1249 (1760)
+..+.+.|||+|-+ +...+ ..|+ ..|..+...+ ..+|+++.||| |..++...+..||++
T Consensus 118 ~~~A~~~Gadyv~~--Fpt~~---------~~G~---~~l~~~~~~~------~~ipvvaiGGI-~~~n~~~~l~aGa~~ 176 (187)
T PRK07455 118 IVTAWQAGASCVKV--FPVQA---------VGGA---DYIKSLQGPL------GHIPLIPTGGV-TLENAQAFIQAGAIA 176 (187)
T ss_pred HHHHHHCCCCEEEE--CcCCc---------ccCH---HHHHHHHhhC------CCCcEEEeCCC-CHHHHHHHHHCCCeE
Confidence 45678899999988 43211 1122 3344444332 25899999999 789999999999999
Q ss_pred cccchhHH
Q 000266 1250 FGFSTAPL 1257 (1760)
Q Consensus 1250 Vg~GTa~L 1257 (1760)
|+++++.+
T Consensus 177 vav~s~i~ 184 (187)
T PRK07455 177 VGLSGQLF 184 (187)
T ss_pred EEEehhcc
Confidence 99998753
|
|
| >PRK06512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=80.81 E-value=3.9 Score=47.32 Aligned_cols=73 Identities=12% Similarity=-0.079 Sum_probs=49.5
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCccccccccCCCH-HHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCC
Q 000266 1170 ASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPW-ELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAE 1248 (1760)
Q Consensus 1170 A~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~-~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAd 1248 (1760)
+..+.+.|||+|.++-.- |. + |....|. ...+.++.+. -++||++-||| |..++..++..||+
T Consensus 124 a~~A~~~gaDYv~~Gpv~--t~-t-----K~~~~p~gl~~l~~~~~~-------~~iPvvAIGGI-~~~n~~~~~~~GA~ 187 (221)
T PRK06512 124 AMEIGELRPDYLFFGKLG--AD-N-----KPEAHPRNLSLAEWWAEM-------IEIPCIVQAGS-DLASAVEVAETGAE 187 (221)
T ss_pred HHHhhhcCCCEEEECCCC--CC-C-----CCCCCCCChHHHHHHHHh-------CCCCEEEEeCC-CHHHHHHHHHhCCC
Confidence 445678999999995442 21 1 1112221 1233333332 25999999999 99999999999999
Q ss_pred ccccchhHHH
Q 000266 1249 EFGFSTAPLI 1258 (1760)
Q Consensus 1249 aVg~GTa~L~ 1258 (1760)
+|.+-++++-
T Consensus 188 giAvisai~~ 197 (221)
T PRK06512 188 FVALERAVFD 197 (221)
T ss_pred EEEEhHHhhC
Confidence 9998887663
|
|
| >PRK12653 fructose-6-phosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=80.76 E-value=18 Score=42.05 Aligned_cols=75 Identities=16% Similarity=0.059 Sum_probs=52.9
Q ss_pred HHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCcccc
Q 000266 1173 VVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGF 1252 (1760)
Q Consensus 1173 aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~ 1252 (1760)
++++||++|-. +=|+ +++.|......+.++++.++..+. +. -+....+|+..+|..++.+||+.+=+
T Consensus 120 Aa~aGa~yIsp--yvgR--------~~~~g~dg~~~i~~i~~~~~~~~~--~t-kILaAS~r~~~~v~~~~~~G~d~vTi 186 (220)
T PRK12653 120 SALAGAEYVAP--YVNR--------IDAQGGSGIQTVTDLQQLLKMHAP--QA-KVLAASFKTPRQALDCLLAGCESITL 186 (220)
T ss_pred HHhcCCcEEEe--ecCh--------HhhcCCChHHHHHHHHHHHHhcCC--Cc-EEEEEecCCHHHHHHHHHcCCCEEEC
Confidence 66788888744 2122 344555556677888888766554 33 34455799999999999999999988
Q ss_pred chhHHHHh
Q 000266 1253 STAPLITL 1260 (1760)
Q Consensus 1253 GTa~L~Al 1260 (1760)
.-..+-.+
T Consensus 187 p~~vl~~l 194 (220)
T PRK12653 187 PLDVAQQM 194 (220)
T ss_pred CHHHHHHH
Confidence 87777655
|
|
| >PRK01362 putative translaldolase; Provisional | Back alignment and domain information |
|---|
Probab=80.48 E-value=13 Score=42.99 Aligned_cols=76 Identities=16% Similarity=0.046 Sum_probs=57.8
Q ss_pred HHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccc
Q 000266 1172 GVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFG 1251 (1760)
Q Consensus 1172 ~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg 1251 (1760)
.|+++||++|.. +=|+ ++++|.+....+.++++.+..++.. +-+....+|+..+|..++.+|||.+-
T Consensus 117 ~Aa~aGa~yisp--yvgR--------i~d~g~dg~~~i~~~~~~~~~~~~~---tkilaAS~r~~~~v~~~~~~G~d~iT 183 (214)
T PRK01362 117 LAAKAGATYVSP--FVGR--------LDDIGTDGMELIEDIREIYDNYGFD---TEIIAASVRHPMHVLEAALAGADIAT 183 (214)
T ss_pred HHHhcCCcEEEe--ecch--------HhhcCCCHHHHHHHHHHHHHHcCCC---cEEEEeecCCHHHHHHHHHcCCCEEe
Confidence 377889987744 2232 4667778888899999998877653 34455679999999999999999998
Q ss_pred cchhHHHHh
Q 000266 1252 FSTAPLITL 1260 (1760)
Q Consensus 1252 ~GTa~L~Al 1260 (1760)
++-..+-.+
T Consensus 184 i~~~vl~~l 192 (214)
T PRK01362 184 IPYKVIKQL 192 (214)
T ss_pred cCHHHHHHH
Confidence 887766654
|
|
| >cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD | Back alignment and domain information |
|---|
Probab=80.27 E-value=9.6 Score=45.24 Aligned_cols=101 Identities=18% Similarity=0.129 Sum_probs=66.8
Q ss_pred HHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcC-CCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCC
Q 000266 1142 QLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGH-ADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVAND 1220 (1760)
Q Consensus 1142 qlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaG-AD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~g 1220 (1760)
+.+..+|+..|. +...|.-.+...-.-+..++++| +|+|.+|..+-.. +-|.. .+.+..+.+...+
T Consensus 170 ~a~~~~~~~~~~-~~~~~idve~~~~~~~~~~~~~~~~d~irlDs~~~~~-----------~~~~~-~~~~~~~~~~~~~ 236 (281)
T cd00516 170 AAVKALRRWLPE-LFIALIDVEVDTLEEALEAAKAGGADGIRLDSGSPEE-----------LDPAV-LILKARAHLDGKG 236 (281)
T ss_pred HHHHHHHHhCCC-CceEEEEEEeCCHHHHHHHHhcCCCCEEEeCCCChHH-----------HHHHH-HHHHHHHhhhhcC
Confidence 567778887665 45555544332233445688899 9999998763211 11222 2233444444333
Q ss_pred CCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHH
Q 000266 1221 LRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1221 lr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L 1257 (1760)
. .++.|+++|||- ...|......|.|.+++|+...
T Consensus 237 ~-~~~~i~~Sggi~-~~~i~~~~~~gvd~~gvG~~~~ 271 (281)
T cd00516 237 L-PRVKIEASGGLD-EENIRAYAETGVDVFGVGTLLH 271 (281)
T ss_pred C-CceEEEEeCCCC-HHHHHHHHHcCCCEEEeCcccc
Confidence 3 478999999996 9999999999999999998644
|
QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway. |
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=80.09 E-value=4.5 Score=48.10 Aligned_cols=71 Identities=10% Similarity=-0.033 Sum_probs=50.4
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC
Q 000266 1167 GVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG 1246 (1760)
Q Consensus 1167 g~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG 1246 (1760)
...|..-.+.||+.|.|---+||.. . . ...+.++.+ + .++|.+-||||+ .++-+.+.+|
T Consensus 46 ~~~A~~~~~~Ga~~lHvVDLdgg~~-------~----n-~~~i~~i~~-~-------~~~vqvGGGIR~-e~i~~~l~~G 104 (262)
T PLN02446 46 AEFAEMYKRDGLTGGHVIMLGADDA-------S----L-AAALEALRA-Y-------PGGLQVGGGVNS-ENAMSYLDAG 104 (262)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCc-------c----c-HHHHHHHHh-C-------CCCEEEeCCccH-HHHHHHHHcC
Confidence 4577778889998876533333221 1 1 234444444 1 389999999997 9999999999
Q ss_pred CCccccchhHHH
Q 000266 1247 AEEFGFSTAPLI 1258 (1760)
Q Consensus 1247 AdaVg~GTa~L~ 1258 (1760)
|+.|-+||.++-
T Consensus 105 a~rViigT~Av~ 116 (262)
T PLN02446 105 ASHVIVTSYVFR 116 (262)
T ss_pred CCEEEEchHHHh
Confidence 999999997654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1760 | ||||
| 1llw_A | 1520 | Structural Studies On The Synchronization Of Cataly | 0.0 | ||
| 1ea0_A | 1479 | Alpha Subunit Of A. Brasilense Glutamate Synthase L | 0.0 | ||
| 2vdc_A | 1472 | The 9.5 A Resolution Structure Of Glutamate Synthas | 0.0 |
| >pdb|1LLW|A Chain A, Structural Studies On The Synchronization Of Catalytic Centers In Glutamate Synthase: Complex With 2-Oxoglutarate Length = 1520 | Back alignment and structure |
|
| >pdb|1EA0|A Chain A, Alpha Subunit Of A. Brasilense Glutamate Synthase Length = 1479 | Back alignment and structure |
|
| >pdb|2VDC|A Chain A, The 9.5 A Resolution Structure Of Glutamate Synthase From Cryo-Electron Microscopy And Its Oligomerization Behavior In Solution: Functional Implications. Length = 1472 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* Length = 1479 | Back alignment and structure |
|---|
Score = 2658 bits (6892), Expect = 0.0
Identities = 664/1532 (43%), Positives = 927/1532 (60%), Gaps = 55/1532 (3%)
Query: 115 CGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILVALPHDFFKEAAK 174
CGVGF+A + G+ R + +E L + HRGA + TGDGAGI VA+P FFK+ K
Sbjct: 1 CGVGFIAAIDGKPRRSVVEKGIEALKAVWHRGAVDADGKTGDGAGIHVAVPQKFFKDHVK 60
Query: 175 NVGFQLPPPGEYAVGMFFLPQSE-NRREESKKVFTKVAESLGHTVLGWRAVPTDNSGLGN 233
+G + P + AVG FLP+ + +E + + + G+ + GWR VP + +G
Sbjct: 61 VIGHRAPD-NKLAVGQVFLPRISLDAQEACRCIVETEILAFGYYIYGWRQVPINVDIIGE 119
Query: 234 SALQTEPVVEQVFLT-PSLRSKVDFENQMYILRRVSMAAIRESLNLEHGGAKDFYICSLS 292
A T P +EQ+ + S FE +YI+RR A++ DFYICSLS
Sbjct: 120 KANATRPEIEQIIVGNNKGVSDEQFELDLYIIRRRIEKAVKGE------QINDFYICSLS 173
Query: 293 SRTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRILGHNG 352
+R+++YKG Q+ +Y DL +ERF S A+ H R+STNTFP+W AQP R+L HNG
Sbjct: 174 ARSIIYKGMFLAEQLTTFY-PDLLDERFESDFAIYHQRYSTNTFPTWPLAQPFRMLAHNG 232
Query: 353 EINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGR 412
EINT++GNVNWMKA E ++ G M+ L P++ V SDSG+ D V E++VRAGR
Sbjct: 233 EINTVKGNVNWMKAHETRMEHPAFG---THMQDLKPVIGVGLSDSGSLDTVFEVMVRAGR 289
Query: 413 SLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNG 472
+ P MM++P+A + + KAL +Y +++MEPWDGPA ++ TDGR++ +DRNG
Sbjct: 290 TAPMVKMMLVPQALTSSQTTPDNHKALIQYCNSVMEPWDGPAALAMTDGRWVVGGMDRNG 349
Query: 473 LRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVDFEKRIVVDDEALKQQ 532
LRP R+ IT G +I SE G+V I V+ KGRL PG M+ VD + + D LK
Sbjct: 350 LRPMRYTITTDGLIIGGSETGMVKIDETQVIEKGRLGPGEMIAVDLQSGKLYRDRELKDH 409
Query: 533 YSLARPYGEWLQRQKIELKNIVESIHKSERVSPGIAGVLPASNDDDNMENMGIHGLLAPL 592
+ +P+ +W+Q L +V++ P+ D L
Sbjct: 410 LATLKPWDKWVQNT-THLDELVKTASLKGE---------PSDMDKAE--------LRRRQ 451
Query: 593 KAFGYTVEALEMLMLPMAKDGTEALGSMGNDAPLAVMSNREKLTFEYFKQMFAQVTNPPI 652
+AFG T+E +E+++ PM +DG EA+GSMG+D+P+AV+S++ + +F+Q F+QVTNPPI
Sbjct: 452 QAFGLTMEDMELILHPMVEDGKEAIGSMGDDSPIAVLSDKYRGLHHFFRQNFSQVTNPPI 511
Query: 653 DPIREKIVTSMECMIGPEGVLTETTEEQCHRLSLKGPLLSIEEMEAIKRMNYRGWRSKVL 712
D +RE+ V S++ +G G + + E Q L L+ P+L+ E A++ +Y G + +
Sbjct: 512 DSLRERRVMSLKTRLGNLGNILDEDETQTRLLQLESPVLTTAEFRAMR--DYMGDTAAEI 569
Query: 713 DITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRVAVSSLLAVGAVHH 772
D T+ D G L + L RI E DA++ G T ++L+D A R A+ ++LA GAVH
Sbjct: 570 DATFPVDGGPEALRDALRRIRQETEDAVRGGATHVILTDEAMGPARAAIPAILATGAVHT 629
Query: 773 HLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAICPYLATEAIWRLQVDGKIPPKAS 832
HL+++ RT L V +AE + H+F L+G GA + YLA EAI G
Sbjct: 630 HLIRSNLRTFTSLNVRTAEGLDTHYFAVLIGVGATTVNAYLAQEAIAERHRRGLFGSM-- 687
Query: 833 GEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEALGLSSEVIEKCFAGTP 892
++ + Y KA + G++K+++KMGIS ++SY+G FEA+GLS ++ + F
Sbjct: 688 ----PLEKGMANYKKAIDDGLLKIMSKMGISVISSYRGGGNFEAIGLSRALVAEHFPAMV 743
Query: 893 SRVDGATFEVLASDALHLHELAFPTRILPPGSAEAVALPNPGDYHWRKGGEIHLNDPLAI 952
SR+ G + L H A+ VALP G Y +RK G+ H + I
Sbjct: 744 SRISGIGLNGIQKKVLEQHATAYNEE--------VVALPVGGFYRFRKSGDRHGWEGGVI 795
Query: 953 AKLQEAARGNSVAAYKEYSKRIQELNKTCNLRGLLKFKEADVKIPLEEVEPASEIVKRFC 1012
LQ+A +S +K+YS+++ + LR LL+ + +P++EVE + I KRF
Sbjct: 796 HTLQQAVTNDSYTTFKKYSEQVNK-RPPMQLRDLLELRSTKAPVPVDEVESITAIRKRFI 854
Query: 1013 TGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRSAIKQVAS 1072
T MS G++S EAH TL AMN+IG KS++GEGGE P+R P +G + SAIKQVAS
Sbjct: 855 TPGMSMGALSPEAHGTLNVAMNRIGAKSDSGEGGEDPARFRPDKNG--DNWNSAIKQVAS 912
Query: 1073 GRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHH 1132
GRFGV++ YL EL+IK+AQGAKPGEGG+LPG KV IA R+ST GV LISPPPHH
Sbjct: 913 GRFGVTAEYLNQCRELEIKVAQGAKPGEGGQLPGFKVTEMIARLRHSTPGVMLISPPPHH 972
Query: 1133 DIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGA 1192
DIYSIEDLAQLIYDLK NP A+++VKLVS +G+G IA+GV K +AD +LISG+ GGTGA
Sbjct: 973 DIYSIEDLAQLIYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSGGTGA 1032
Query: 1193 SRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGF 1252
S T IK AGLPWE+GL+E HQ L N LR R L+TDG LKTGRD+ IAA+LGAEEFG
Sbjct: 1033 SPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGI 1092
Query: 1253 STAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQ 1312
TA LI +GCIM+R+CH NTCPVG+ QD LR+KF G PE V+N F LAEE+REI++
Sbjct: 1093 GTASLIAMGCIMVRQCHSNTCPVGVCVQDDKLRQKFVGTPEKVVNLFTFLAEEVREILAG 1152
Query: 1313 LGFRTITEMIGRSDMLEVDKEVTKTNEKLENIDLSLLLRPAADLRPEAAQYCVQKQDHGL 1372
LGFR++ E+IGR+D+L V++ E L+++DL+ L E A+YC + + +
Sbjct: 1153 LGFRSLNEVIGRTDLLHQ---VSRGAEHLDDLDLNPRLAQVD--PGENARYCTLQGRNEV 1207
Query: 1373 DMALDQKLIKLSKAALEKALPVYIETPVCNVNRAVGTMLSHEVTKRYHLVGLPADTIHIK 1432
LD +++ ++ E+ + + N RA+GT LS VT+++ + GL I I+
Sbjct: 1208 PDTLDARIVADARPLFEEGEKMQLAYNARNTQRAIGTRLSSMVTRKFGMFGLQPGHITIR 1267
Query: 1433 LTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVA 1492
L G+AGQS+GAF GI LE+ GD+NDYVGKGLSGG IV P S + N +IGN
Sbjct: 1268 LRGTAGQSLGAFAVQGIKLEVMGDANDYVGKGLSGGTIVVRPTTSSPLETNKNTIIGNTV 1327
Query: 1493 LYGATSGEAYFNGMAAERFCVRNSGARAVVEGVGDHGCEYMTGGTVVVLGKTGRNFAAGM 1552
LYGAT+G+ + G A ERF VRNSGA VVEG G +GCEYMTGGT V+LG+ G NFAAGM
Sbjct: 1328 LYGATAGKLFAAGQAGERFAVRNSGATVVVEGCGSNGCEYMTGGTAVILGRVGDNFAAGM 1387
Query: 1553 SGGIAYVLDVDGKFRSRCNPELVDLDKVEEEEDIITLRMMIQQHQRYTNSQLAKEVLADF 1612
+GG+AYV D+D N E V ++E L+ +I++H T S+ A E+L D+
Sbjct: 1388 TGGMAYVYDLDDSLPLYINDESVIFQRIEVGHYESQLKHLIEEHVTETQSRFAAEILNDW 1447
Query: 1613 ENLLPKFIKVFPRDYKRVLASMKVAAAQEAAE 1644
+ KF +V P++ L +AE
Sbjct: 1448 AREVTKFWQVVPKEMLNRLEVPVHLPKAISAE 1479
|
| >1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* Length = 1520 | Back alignment and structure |
|---|
Score = 2612 bits (6773), Expect = 0.0
Identities = 672/1572 (42%), Positives = 922/1572 (58%), Gaps = 91/1572 (5%)
Query: 115 CGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILVALPHDFFKEAAK 174
CGVGF+A L G+ + AL+ L M HRG C + ++GDGAG++ A+P + +
Sbjct: 1 CGVGFIANLRGKPDHTLVEQALKALGCMEHRGGCSADNDSGDGAGVMTAIPRELLAQWFN 60
Query: 175 NVGFQLPPPGEYAVGMFFLPQSENRREESKKVFTKVAESLGHTVLGWRAVPTDNSGLGNS 234
+P VGM FLPQ + RE ++ +V TVLGWR VP ++ LG
Sbjct: 61 TRNLPMPDGDRLGVGMVFLPQEPSAREVARAYVEEVVRLEKLTVLGWREVPVNSDVLGIQ 120
Query: 235 ALQTEPVVEQVFLT-PSLRSKVDFENQMYILRRVSMAAIRESLNLEHGGAKDFYICSLSS 293
A +P +EQ+ +T P + + + ++YI R + + A+DFY+CS S
Sbjct: 121 AKNNQPHIEQILVTCPEGCAGDELDRRLYIARSI----------IGKKLAEDFYVCSFSC 170
Query: 294 RTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRILGHNGE 353
RT+VYKG ++ I + ++Y DL N +TS A+ H RFSTNT P W AQPMR+LGHNGE
Sbjct: 171 RTIVYKGMVRSIILGEFY-LDLKNPGYTSNFAVYHRRFSTNTMPKWPLAQPMRLLGHNGE 229
Query: 354 INTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRS 413
INTL GN+NWM ARE L+ K E++ L PIV+ ++SDS D LELLVR GRS
Sbjct: 230 INTLLGNINWMAAREKELEVSGWT--KAELEALTPIVNQANSDSYNLDSALELLVRTGRS 287
Query: 414 LPEAVMMMIPEAWQNDKNMD--PQRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRN 471
EA M+++PEA++N + P+ ++Y+S L EPWDGPAL+ F+DG+ +GA LDRN
Sbjct: 288 PLEAAMILVPEAYKNQPALKDYPEISDFHDYYSGLQEPWDGPALLVFSDGKIVGAGLDRN 347
Query: 472 GLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVDFEKRIVVDDEALKQ 531
GLRP R+ IT +++ SE GVVD+P D++ KGRL PG M+ VD ++ ++ + +KQ
Sbjct: 348 GLRPARYCITKDDYIVLGSEAGVVDLPEVDIVEKGRLAPGQMIAVDLAEQKILKNYQIKQ 407
Query: 532 QYSLARPYGEWLQRQKIELKNIVESIHKSERVSPGIAGVLPASNDDDNMENMGIHGLLAP 591
Q + PYGEW++ Q+ + + + ND +L
Sbjct: 408 QAAQKYPYGEWIKIQRQTVASDSFAEK-------------TLFNDAQT--------VLQQ 446
Query: 592 LKAFGYTVEALEMLMLPMAKDGTEALGSMGNDAPLAVMSNREKLTFEYFKQMFAQVTNPP 651
AFGYT E +EM+++PMA G E MG+D PLAV+S++ +L ++YFKQ FAQVTNPP
Sbjct: 447 QAAFGYTAEDVEMVVVPMASQGKEPTFCMGDDTPLAVLSHKPRLLYDYFKQRFAQVTNPP 506
Query: 652 IDPIREKIVTSMECMIGPEGVLTETTEEQCHRLSLKGPLLSIEEMEAIKRMNYRGWRSKV 711
IDP+RE +V S+ +G G L E E + L+ PL++ E++AIK +
Sbjct: 507 IDPLRENLVMSLAMFLGKRGNLLEPKAESARTIKLRSPLVNEVELQAIKTG---QLQVAE 563
Query: 712 LDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRA----FSSKRVAVSSLLAV 767
+ Y D G LE+ L + A ++ G +LVL+DR + + + LLAV
Sbjct: 564 VSTLYDLD-GVNSLEDALTNLVKTAIATVQAGAEILVLTDRPNGAILTENQSFIPPLLAV 622
Query: 768 GAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAICPYLATEAIWRLQVDGKI 827
GAVHHHL++ R + LIV++A+ HHF LVG+GA AICPYLA E++ + +D K
Sbjct: 623 GAVHHHLIRAGLRLKASLIVDTAQCWSTHHFACLVGYGASAICPYLALESVRQWWLDEKT 682
Query: 828 PP-KASGEFH--SKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEALGLSSEVI 884
+G +K Y ++ G+ K+L+KMGIS LASY GAQIFEA+GL +E++
Sbjct: 683 QKLMENGRLDRIDLPTALKNYRQSVEAGLFKILSKMGISLLASYHGAQIFEAIGLGAELV 742
Query: 885 EKCFAGTPSRVDGATFEVLASDALHLHELAFPTRILPPGSAEAVALPNPGDYHWRKGGEI 944
E FAGT SRV G T +A + + H +AFP A L N G ++R GGE
Sbjct: 743 EYAFAGTTSRVGGLTIADVAGEVMVFHGMAFPEM--------AKKLENFGFVNYRPGGEY 794
Query: 945 HLNDPLAIAKLQEAAR----------GNSVAAYKEYSKRIQELNKTCNLRGLLKFKEADV 994
H+N P L +A G + Y+ Y + +++ LR LL F
Sbjct: 795 HMNSPEMSKSLHKAVAAYKVGGNGNNGEAYDHYELYRQYLKD-RPVTALRDLLDFNADQP 853
Query: 995 KIPLEEVEPASEIVKRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEP 1054
I LEEVE IVKRFCTG MS G++S EAH TLA AMN++G KSN+GEGGE R
Sbjct: 854 AISLEEVESVESIVKRFCTGGMSLGALSREAHETLAIAMNRLGAKSNSGEGGEDVVRYLT 913
Query: 1055 LSDGSMNP----------------KRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKP 1098
L D SAIKQ+ASGRFGV+ YL + +L+IKMAQGAKP
Sbjct: 914 LDDVDSEGNSPTLPHLHGLQNGDTANSAIKQIASGRFGVTPEYLMSGKQLEIKMAQGAKP 973
Query: 1099 GEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISV 1158
GEGG+LPG KV IA+ R S GV LISPPPHHDIYSIEDLAQLIYDL NP A++SV
Sbjct: 974 GEGGQLPGKKVSEYIAMLRRSKPGVTLISPPPHHDIYSIEDLAQLIYDLHQINPEAQVSV 1033
Query: 1159 KLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVA 1218
KLV+E G+G IA+GV K +AD + ISGHDGGTGAS + IK+AG PWELG+ E H+ L+
Sbjct: 1034 KLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEVHRVLME 1093
Query: 1219 NDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIA 1278
N LR R +L+ DG LKTG DV +AAL+GAEE+GF + +I GCIM R CH N CPVG+A
Sbjct: 1094 NQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIAEGCIMARVCHTNNCPVGVA 1153
Query: 1279 TQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVDKEVTKTN 1338
TQ LR++F G P V+NFF+ +AEE+R +++ LG+R++ ++IGR+D+L+V +V
Sbjct: 1154 TQQERLRQRFKGVPGQVVNFFYFIAEEVRSLLAHLGYRSLDDIIGRTDLLKVRSDV--QL 1211
Query: 1339 EKLENIDLSLLLRPAADLRPEAAQYCVQKQDHGLDMALDQKLIKLS--KAALEKALPVYI 1396
K +N+ L LL + Q+ + H LD ++ + A+
Sbjct: 1212 SKTQNLTLDCLLNLPD--TKQNRQWLNHEPVHSNGPVLDDDILADPDIQEAINHQTTATK 1269
Query: 1397 ETPVCNVNRAVGTMLSHEVTKRYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGD 1456
+ N +R VGT LS + K+Y G I + G+AGQS GAF G+ L L+G+
Sbjct: 1270 TYRLVNTDRTVGTRLSGAIAKKYGNNGFE-GNITLNFQGAAGQSFGAFNLDGMTLHLQGE 1328
Query: 1457 SNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCVRNS 1516
+NDYVGKG++GG+IV P + F P+ N++IGN LYGAT G Y NG A ERF VRNS
Sbjct: 1329 ANDYVGKGMNGGEIVIVPHPQASFAPEDNVIIGNTCLYGATGGNLYANGRAGERFAVRNS 1388
Query: 1517 GARAVVEGVGDHGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYVLDVDGKFRSRCNPELVD 1576
+AV+EG GDH CEYMTGG +VVLG GRN AGM+GG+AY LD G + NPE++
Sbjct: 1389 VGKAVIEGAGDHCCEYMTGGVIVVLGPVGRNVGAGMTGGLAYFLDEVGDLPEKINPEIIT 1448
Query: 1577 LDKVEEEEDIITLRMMIQQHQRYTNSQLAKEVLADFENLLPKFIKVFPRDYKRVLASMKV 1636
L ++ + L+ +I H +T S K +LA++ + L KF + P K +
Sbjct: 1449 LQRITASKGEEQLKSLITAHVEHTGSPKGKAILANWSDYLGKFWQAVPPSEKDSPEANND 1508
Query: 1637 AAAQ-EAAEDAV 1647
+ E +V
Sbjct: 1509 VSLTGEKTLTSV 1520
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 73.0 bits (178), Expect = 8e-13
Identities = 85/645 (13%), Positives = 179/645 (27%), Gaps = 199/645 (30%)
Query: 485 RVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVDFEKRIVVD--DEALKQQYS-LARPY-G 540
++ E+ + + + V RL L+ ++ +V +E L+ Y L P
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRL---FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 541 EWLQRQKIE---------LKNIVESIHKS--ERVSPGIAGVLPASNDDDNMENMGIHGLL 589
E Q + L N + K R+ P + A + +N+ I G+
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP-YLKLRQALLELRPAKNVLIDGV- 158
Query: 590 APLKAFGYTVEALEMLMLPMAKDGTEALG------SMGN-DAPLAVMSNREKLTFEYFKQ 642
G T AL++ + + + ++ N ++P V+ +KL ++
Sbjct: 159 ---LGSGKTWVALDVCL---SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ-IDP 211
Query: 643 MFAQVTNPPIDPIREKIVTSMECMIGPEGVLTETTEEQCHRL----SLKGPLL---SIEE 695
+ ++ + + + + RL + LL +++
Sbjct: 212 NWTSRSDHSSNIKLR----------------IHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 696 MEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFS 755
+A N K+L +T T + + A + L +
Sbjct: 256 AKAWNAFNLS---CKIL-LT------------TRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 756 SKRVAVSSLLAVGAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAICPYLAT 815
V SLL K L+ PRE P
Sbjct: 300 PDEVK--SLLL---------KYLD------CRPQDLPRE-----------VLTTNP-RRL 330
Query: 816 EAIWRLQVDGKIPPKASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFE 875
I DG +K N + + + ++ L + ++F+
Sbjct: 331 SIIAESIRDGLATWD--------------NWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 876 ALGL-------SSEVIEKCFAGTPSRVDGATFEVLASDAL----------HLHELAFPTR 918
L + + ++ + L +L + + +
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 919 ILPPGSAEA----VA-------------LPNPGD--------YHWRKGG---------EI 944
+ V +P D +H + +
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496
Query: 945 HLNDPLAIAKLQEA-----ARG---NSVAAYKEYSKRIQELNKTCN---LRGLLKFKEAD 993
L+ K++ A G N++ K Y I + N + +L F
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD-NDPKYERLVNAILDF---- 551
Query: 994 VKIPLEEVE------PASEIVKRFCTGAMSY--GSISLEAHTTLA 1030
L ++E +++++ A+ +I EAH +
Sbjct: 552 ----LPKIEENLICSKYTDLLRI----ALMAEDEAIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.7 bits (154), Expect = 5e-10
Identities = 62/432 (14%), Positives = 114/432 (26%), Gaps = 119/432 (27%)
Query: 1370 HGLDMALDQKLIKLS-KAALEKALPVYIETPVCN-VNRAVGTMLSHEVTKRYHLVGLP-- 1425
H +D + + K L +++ C V ++LS E H++
Sbjct: 5 HHMDFETGE--HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID--HIIMSKDA 60
Query: 1426 ---ADTIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPKG----- 1477
+ L + V F+ E +Y I +
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFV-------EEVLRINY---KFLMSPI-KTEQRQPSMMT 109
Query: 1478 SLFDPKVNIVIGNVAL---YGATSGEAYFNGMAAERFCVRN------SGARAVVEGVGDH 1528
++ + + + + + Y + + Y +R +++GV
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLK--------LRQALLELRPAKNVLIDGVL-- 159
Query: 1529 GCEYMTGGTVVVLGKTGRNFA--AGMSGGIAYV-------------------LDVDGKFR 1567
G G T V L ++ M I ++ +D +
Sbjct: 160 GS----GKTWVAL-DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 1568 SRCNPELVDLDKVEEEEDIITLRMMIQQHQRYTNSQLAKEVLADFENLLPKFIKVF---- 1623
SR + ++ + LR +++ Y N L VL + +N K F
Sbjct: 215 SRSDHSSNIKLRIHSIQA--ELRRLLKSKP-YENCLL---VLLNVQN--AKAWNAFNLSC 266
Query: 1624 -----PRDYKRVLASMKVAAAQEAAEDAVKDAEEPDEADFKEKDAFEELKKMAIASLNEK 1678
R K+V + A + D PDE K + L
Sbjct: 267 KILLTTRF-KQVTDFLSAATTTHISLDHHSMTLTPDEV----KSLLLKYLDCRPQDLPR- 320
Query: 1679 SNQEAEQVEPTKRPSRVADAVKHRGFIAYEREGVQYRDPNIRMNDWKEVMEESKPGPLLK 1738
E P I RD ++WK V + L
Sbjct: 321 ---EVLTTNPR-----------RLSII-----AESIRDGLATWDNWKHVNCDK-----LT 356
Query: 1739 TQSARCMDCGTP 1750
T ++ P
Sbjct: 357 TIIESSLNVLEP 368
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 2e-06
Identities = 78/595 (13%), Positives = 152/595 (25%), Gaps = 198/595 (33%)
Query: 9 FVQLRANSSLTSLSRKSGYPQSNIVSPLSS-GGRAKAARCAAAKKSTVLERRFFGNQLRL 67
+++LR +L L P N++ + G K S ++ +
Sbjct: 137 YLKLR--QALLELR-----PAKNVL--IDGVLGSGKTWVALDVCLSYKVQCKMDFK---- 183
Query: 68 AGSERVHLWRSDGPGKSPKLRVVVRSALSGVPEKPLGLYDPKFDKDSCGVGFVAELSGES 127
+ W + SP+ V E L + D + + + +
Sbjct: 184 -----IF-WLNLKNCNSPET----------VLEMLQKLLY-QIDPNWTSRSDHSS-NIKL 225
Query: 128 SRKTITDALEMLVRMAHRGAC------------------GCET--NTGDGAGILVALPHD 167
+I L L++ C C+ T
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF----------- 274
Query: 168 FFKEAAKNVGFQLPPPGEYAVGMFFLPQSENRREESKKVFTKVAESLGHTVLGWRAVPTD 227
K V L + + + T E +L + +
Sbjct: 275 ------KQVTDFLSAATTTHISL----------DHHSMTLTP-DEVKS--LLL-KYLDCR 314
Query: 228 NSGLGNSALQTEPVVEQVFLTPSLRSKVD-FEN-QMYILRRVSMAAIRESLNLEHGGAKD 285
L L T P + S+R + ++N + +++ I SLN
Sbjct: 315 PQDLPREVLTTNPRRLSIIAE-SIRDGLATWDNWKHVNCDKLTTI-IESSLN-------- 364
Query: 286 FYICSLSSRTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPM 345
L+P + + + L + FP P
Sbjct: 365 ---------------VLEPAEYRKMFD-RLS----------V--------FPP-SAHIPT 389
Query: 346 RILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLE 405
+L + W + + ++K L+ S LE
Sbjct: 390 ILLS-----------LIWFDVIK---SDVMVVVNKLHKYSLVEK-QPKESTISIPSIYLE 434
Query: 406 LLVRAG------RSLPEAVMMMIPEAW-QNDKNMDPQRKALYEYFS---ALMEPWDGPAL 455
L V+ RS+ + IP+ + +D + Y + +E + L
Sbjct: 435 LKVKLENEYALHRSIVDHY--NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 456 IS--FTDGRYLGATLDRNGL---RPG---------RFYITHSGRVIMASEVGVVDIPPED 501
F D R+L + + G +FY + I D
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY--------------ICDND 538
Query: 502 VLRKGRLNPGMMLLVDF----EKRIVVDDEALKQQYSLARPYGEWL-----QRQK 547
+ +N ++DF E+ ++ + +L Q Q+
Sbjct: 539 PKYERLVN----AILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 5e-05
Identities = 31/242 (12%), Positives = 64/242 (26%), Gaps = 64/242 (26%)
Query: 1558 YVLDVDGKFRSRCNPELVDLDKVEEEEDIITLRMMIQQHQRYTN-----------SQLAK 1606
Y+ D + N + V + + LR + + + N + +A
Sbjct: 112 YIEQRDRLYND--NQVFAKYN-VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168
Query: 1607 EVLADFENLLPKFIKVF---------PRDYKRVLASMKVAAAQEAAEDAVKDAEEPDEAD 1657
+V ++ K+F P +L + + +
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 1658 FKEKDAFEELKKMAIASLNEKS-----N-QEAEQVEP---------TKRPSRVADAVKHR 1702
EL+++ + E N Q A+ T R +V D +
Sbjct: 229 ----SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS-- 282
Query: 1703 GFIAYEREGVQYRDPNIRMNDWKEVMEESKPGPLLKTQSARCMDCGT---PFCHQVC-IA 1758
+I ++ + + LL + +DC P +V
Sbjct: 283 --------AATTT--HISLDHHSMTLTPDEVKSLL----LKYLDCRPQDLP--REVLTTN 326
Query: 1759 PF 1760
P
Sbjct: 327 PR 328
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 2e-04
Identities = 49/330 (14%), Positives = 103/330 (31%), Gaps = 71/330 (21%)
Query: 1116 TRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVG--VIASGV 1173
R+ + +++ ++ +L L P + + G G +A V
Sbjct: 115 QRDRLYNDNQVFAK--YNVSRLQPYLKLRQALLELRPAKNVLI--DGVLGSGKTWVALDV 170
Query: 1174 VKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQL 1233
+ + D W +KN P + E Q L + Q D
Sbjct: 171 CL---SYKVQCKMDFKI---FWLNLKNCNSPETV--LEMLQKL---------LYQIDPNW 213
Query: 1234 KTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPE 1293
+ D + L A L L + K ++N C + VL +
Sbjct: 214 TSRSDHSSNIKLRIHSI---QAELRRL---LKSKPYEN-CLL-------VLLN--VQNAK 257
Query: 1294 HVINFFF---MLAEELREIMSQLGFRTITEMIG---RSDMLEVDKEVTKTNEKLENIDLS 1347
F +L + ++ F+ +T+ + + + +T T ++++++ L
Sbjct: 258 AWNAFNLSCKIL------LTTR--FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 1348 LLLRPAADLRPEAAQYCVQKQDHGLDMALDQKLIKLSKAALEKALPVYIETPVCN-VNRA 1406
L DL E + +++ + I+ A + + C+ +
Sbjct: 310 YLDCRPQDLPREV------LTTNPRRLSIIAESIRDGLATWD-----NWKHVNCDKLTTI 358
Query: 1407 VGTMLSH----EVTKRYH-LVGLPADTIHI 1431
+ + L+ E K + L P HI
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSA-HI 387
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456 | Back alignment and structure |
|---|
Score = 57.5 bits (140), Expect = 2e-08
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 1723 DWKEVMEESKPGPLLKTQSARCMDCGTPFCHQVC 1756
D+ E+ Q+ RC CG PFC C
Sbjct: 2 DFAEIYARFSD-ERANEQANRCSQCGVPFCQVHC 34
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* Length = 332 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 7e-07
Identities = 64/325 (19%), Positives = 95/325 (29%), Gaps = 60/325 (18%)
Query: 1011 FCTGAMSYGSISLEA-HTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRSAIKQ 1069
F GAM+ G + E + LA A +G G S L
Sbjct: 61 FLIGAMTGGEENGERINLALAEAAEALGVGMMLG------SGRILLERPE---------- 104
Query: 1070 VASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPP 1129
A F V + +AQ + G + + + A ++P
Sbjct: 105 -ALRSFRVRKVAPKALLIANLGLAQLRRYGR-------DDLLRLVEMLEADALAFHVNPL 156
Query: 1130 PHHDIYSIEDLAQLIYDLKNANP-GARISVKLVSEAGVGVIASGVVKGHADHVLISGHDG 1188
D L+ L P + VK V A + V ++G G
Sbjct: 157 QEAVQRGDTDFRGLVERLAELLPLPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGA-G 215
Query: 1189 GT-----GASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAA 1243
GT G E+G+ L ++ L G + TG D A A
Sbjct: 216 GTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTDGAKAL 275
Query: 1244 LLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLA 1303
LGA+ + +A P+LR G E V +
Sbjct: 276 ALGADL-------------------------LAVAR--PLLRPALEGA-ERVAAWIGDYL 307
Query: 1304 EELREIMSQLGFRTITEMIGRSDML 1328
EELR + +G R E GR + +
Sbjct: 308 EELRTALFAIGARNPKEARGRVERV 332
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 2e-06
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 12/82 (14%)
Query: 1636 VAAA---QEAAEDAVKDAEEPD----EADFKEKDAFEELKKMAIASLNEKSNQEAEQVEP 1688
+A A + E K EE E D K +E ++ A L E + +++EQVE
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK 133
Query: 1689 TKRPSRVADAVKHRGFIAYERE 1710
K +R+AD F + +
Sbjct: 134 NKINNRIADKA----FYQ-QPD 150
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1760 | ||||
| d1ea0a2 | 771 | c.1.4.1 (A:423-1193) Alpha subunit of glutamate sy | 0.0 | |
| d1ofda2 | 809 | c.1.4.1 (A:431-1239) Alpha subunit of glutamate sy | 0.0 | |
| d1ea0a3 | 422 | d.153.1.1 (A:1-422) Alpha subunit of glutamate syn | 1e-153 | |
| d1ofda3 | 430 | d.153.1.1 (A:1-430) Alpha subunit of glutamate syn | 1e-152 | |
| d1ea0a1 | 270 | b.80.4.1 (A:1203-1472) Alpha subunit of glutamate | 2e-86 | |
| d1ofda1 | 268 | b.80.4.1 (A:1240-1507) Alpha subunit of glutamate | 3e-82 | |
| d1p0ka_ | 329 | c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomera | 3e-41 | |
| d1vcfa1 | 310 | c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-i | 1e-28 | |
| d1gtea1 | 182 | a.1.2.2 (A:2-183) Dihydropyrimidine dehydrogenase, | 3e-05 | |
| d1kbia1 | 414 | c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal | 6e-05 |
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} Length = 771 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Score = 852 bits (2202), Expect = 0.0
Identities = 359/766 (46%), Positives = 494/766 (64%), Gaps = 22/766 (2%)
Query: 588 LLAPLKAFGYTVEALEMLMLPMAKDGTEALGSMGNDAPLAVMSNREKLTFEYFKQMFAQV 647
L +AFG T+E +E+++ PM +DG EA+GSMG+D+P+AV+S++ + +F+Q F+QV
Sbjct: 25 LRRRQQAFGLTMEDMELILHPMVEDGKEAIGSMGDDSPIAVLSDKYRGLHHFFRQNFSQV 84
Query: 648 TNPPIDPIREKIVTSMECMIGPEGVLTETTEEQCHRLSLKGPLLSIEEMEAIKRMNYRGW 707
TNPPID +RE+ V S++ +G G + + E Q L L+ P+L+ E A++ +Y G
Sbjct: 85 TNPPIDSLRERRVMSLKTRLGNLGNILDEDETQTRLLQLESPVLTTAEFRAMR--DYMGD 142
Query: 708 RSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRVAVSSLLAV 767
+ +D T+ D G L + L RI E DA++ G T ++L+D A R A+ ++LA
Sbjct: 143 TAAEIDATFPVDGGPEALRDALRRIRQETEDAVRGGATHVILTDEAMGPARAAIPAILAT 202
Query: 768 GAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAICPYLATEAIWRLQVDGKI 827
GAVH HL+++ RT L V +AE + H+F L+G GA + YLA EAI G
Sbjct: 203 GAVHTHLIRSNLRTFTSLNVRTAEGLDTHYFAVLIGVGATTVNAYLAQEAIAERHRRGLF 262
Query: 828 PPKASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEALGLSSEVIEKC 887
++ + Y KA + G++K+++KMGIS ++SY+G FEA+GLS ++ +
Sbjct: 263 GS------MPLEKGMANYKKAIDDGLLKIMSKMGISVISSYRGGGNFEAIGLSRALVAEH 316
Query: 888 FAGTPSRVDGATFEVLASDALHLHELAFPTRILPPGSAEAVALPNPGDYHWRKGGEIHLN 947
F SR+ G + L H A+ + VALP G Y +RK G+ H
Sbjct: 317 FPAMVSRISGIGLNGIQKKVLEQHATAYNEEV--------VALPVGGFYRFRKSGDRHGW 368
Query: 948 DPLAIAKLQEAARGNSVAAYKEYSKRIQELNKTCNLRGLLKFKEADVKIPLEEVEPASEI 1007
+ I LQ+A +S +K+YS+++ + LR LL+ + +P++EVE + I
Sbjct: 369 EGGVIHTLQQAVTNDSYTTFKKYSEQVNKRPPMQ-LRDLLELRSTKAPVPVDEVESITAI 427
Query: 1008 VKRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRSAI 1067
KRF T MS G++S EAH TL AMN+IG KS++GEGGE P+R P +G SAI
Sbjct: 428 RKRFITPGMSMGALSPEAHGTLNVAMNRIGAKSDSGEGGEDPARFRPDKNGDNW--NSAI 485
Query: 1068 KQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLIS 1127
KQVASGRFGV++ YL EL+IK+AQGAKPGEGG+LPG KV IA R+ST GV LIS
Sbjct: 486 KQVASGRFGVTAEYLNQCRELEIKVAQGAKPGEGGQLPGFKVTEMIARLRHSTPGVMLIS 545
Query: 1128 PPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHD 1187
PPPHHDIYSIEDLAQLIYDLK NP A+++VKLVS +G+G IA+GV K +AD +LISG+
Sbjct: 546 PPPHHDIYSIEDLAQLIYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNS 605
Query: 1188 GGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGA 1247
GGTGAS T IK AGLPWE+GL+E HQ L N LR R L+TDG LKTGRD+ IAA+LGA
Sbjct: 606 GGTGASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGA 665
Query: 1248 EEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELR 1307
EEFG TA LI +GCIM+R+CH NTCPVG+ QD LR+KF G PE V+N F LAEE+R
Sbjct: 666 EEFGIGTASLIAMGCIMVRQCHSNTCPVGVCVQDDKLRQKFVGTPEKVVNLFTFLAEEVR 725
Query: 1308 EIMSQLGFRTITEMIGRSDMLEVDKEVTKTNEKLENIDLSLLLRPA 1353
EI++ LGFR++ E+IGR+D+L V++ E L+++DL+ L
Sbjct: 726 EILAGLGFRSLNEVIGRTDLLHQ---VSRGAEHLDDLDLNPRLAQV 768
|
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} Length = 809 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Score = 843 bits (2179), Expect = 0.0
Identities = 371/796 (46%), Positives = 488/796 (61%), Gaps = 46/796 (5%)
Query: 588 LLAPLKAFGYTVEALEMLMLPMAKDGTEALGSMGNDAPLAVMSNREKLTFEYFKQMFAQV 647
+L AFGYT E +EM+++PMA G E MG+D PLAV+S++ +L ++YFKQ FAQV
Sbjct: 13 VLQQQAAFGYTAEDVEMVVVPMASQGKEPTFCMGDDTPLAVLSHKPRLLYDYFKQRFAQV 72
Query: 648 TNPPIDPIREKIVTSMECMIGPEGVLTETTEEQCHRLSLKGPLLSIEEMEAIKRMNYRGW 707
TNPPIDP+RE +V S+ +G G L E E + L+ PL++ E++AIK +
Sbjct: 73 TNPPIDPLRENLVMSLAMFLGKRGNLLEPKAESARTIKLRSPLVNEVELQAIKTGQLQ-- 130
Query: 708 RSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRA----FSSKRVAVSS 763
+ Y D G LE+ L + A ++ G +LVL+DR + + +
Sbjct: 131 -VAEVSTLYDLD-GVNSLEDALTNLVKTAIATVQAGAEILVLTDRPNGAILTENQSFIPP 188
Query: 764 LLAVGAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAICPYLATEAIWRLQV 823
LLAVGAVHHHL++ R + LIV++A+ HHF LVG+GA AICPYLA E++ + +
Sbjct: 189 LLAVGAVHHHLIRAGLRLKASLIVDTAQCWSTHHFACLVGYGASAICPYLALESVRQWWL 248
Query: 824 DGKIPPKASGEFHSK---DELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEALGLS 880
D K + +K Y ++ G+ K+L+KMGIS LASY GAQIFEA+GL
Sbjct: 249 DEKTQKLMENGRLDRIDLPTALKNYRQSVEAGLFKILSKMGISLLASYHGAQIFEAIGLG 308
Query: 881 SEVIEKCFAGTPSRVDGATFEVLASDALHLHELAFPTRILPPGSAEAVALPNPGDYHWRK 940
+E++E FAGT SRV G T +A + + H +AFP L N G ++R
Sbjct: 309 AELVEYAFAGTTSRVGGLTIADVAGEVMVFHGMAFPEMAKK--------LENFGFVNYRP 360
Query: 941 GGEIHLNDPLAIAKLQE-------AARGNSVAAYKEYSKRIQELNK--TCNLRGLLKFKE 991
GGE H+N P L + GN+ AY Y Q L LR LL F
Sbjct: 361 GGEYHMNSPEMSKSLHKAVAAYKVGGNGNNGEAYDHYELYRQYLKDRPVTALRDLLDFNA 420
Query: 992 ADVKIPLEEVEPASEIVKRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSR 1051
I LEEVE IVKRFCTG MS G++S EAH TLA AMN++G KSN+GEGGE R
Sbjct: 421 DQPAISLEEVESVESIVKRFCTGGMSLGALSREAHETLAIAMNRLGAKSNSGEGGEDVVR 480
Query: 1052 MEPLSDGSM----------------NPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQG 1095
L D + SAIKQ+ASGRFGV+ YL + +L+IKMAQG
Sbjct: 481 YLTLDDVDSEGNSPTLPHLHGLQNGDTANSAIKQIASGRFGVTPEYLMSGKQLEIKMAQG 540
Query: 1096 AKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGAR 1155
AKPGEGG+LPG KV IA+ R S GV LISPPPHHDIYSIEDLAQLIYDL NP A+
Sbjct: 541 AKPGEGGQLPGKKVSEYIAMLRRSKPGVTLISPPPHHDIYSIEDLAQLIYDLHQINPEAQ 600
Query: 1156 ISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQT 1215
+SVKLV+E G+G IA+GV K +AD + ISGHDGGTGAS + IK+AG PWELG+ E H+
Sbjct: 601 VSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEVHRV 660
Query: 1216 LVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPV 1275
L+ N LR R +L+ DG LKTG DV +AAL+GAEE+GF + +I GCIM R CH N CPV
Sbjct: 661 LMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIAEGCIMARVCHTNNCPV 720
Query: 1276 GIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVDKEVT 1335
G+ATQ LR++F G P V+NFF+ +AEE+R +++ LG+R++ ++IGR+D+L+V +V
Sbjct: 721 GVATQQERLRQRFKGVPGQVVNFFYFIAEEVRSLLAHLGYRSLDDIIGRTDLLKVRSDV- 779
Query: 1336 KTNEKLENIDLSLLLR 1351
K +N+ L LL
Sbjct: 780 -QLSKTQNLTLDCLLN 794
|
| >d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase, N-terminal domain {Azospirillum brasilense [TaxId: 192]} Length = 422 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Class II glutamine amidotransferases domain: Alpha subunit of glutamate synthase, N-terminal domain species: Azospirillum brasilense [TaxId: 192]
Score = 473 bits (1219), Expect = e-153
Identities = 179/432 (41%), Positives = 255/432 (59%), Gaps = 13/432 (3%)
Query: 115 CGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILVALPHDFFKEAAK 174
CGVGF+A + G+ R + +E L + HRGA + TGDGAGI VA+P FFK+ K
Sbjct: 1 CGVGFIAAIDGKPRRSVVEKGIEALKAVWHRGAVDADGKTGDGAGIHVAVPQKFFKDHVK 60
Query: 175 NVGFQLPPPGEYAVGMFFLPQSE-NRREESKKVFTKVAESLGHTVLGWRAVPTDNSGLGN 233
+G P + AVG FLP+ + +E + + + G+ + GWR VP + +G
Sbjct: 61 VIGH-RAPDNKLAVGQVFLPRISLDAQEACRCIVETEILAFGYYIYGWRQVPINVDIIGE 119
Query: 234 SALQTEPVVEQVFL-TPSLRSKVDFENQMYILRRVSMAAIRESLNLEHGGAKDFYICSLS 292
A T P +EQ+ + S FE +YI+RR A++ DFYICSLS
Sbjct: 120 KANATRPEIEQIIVGNNKGVSDEQFELDLYIIRRRIEKAVKGE------QINDFYICSLS 173
Query: 293 SRTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRILGHNG 352
+R+++YKG Q+ +Y DL +ERF S A+ H R+STNTFP+W AQP R+L HNG
Sbjct: 174 ARSIIYKGMFLAEQLTTFYP-DLLDERFESDFAIYHQRYSTNTFPTWPLAQPFRMLAHNG 232
Query: 353 EINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGR 412
EINT++GNVNWMKA E ++ G M+ L P++ V SDSG+ D V E++VRAGR
Sbjct: 233 EINTVKGNVNWMKAHETRMEHPAFG---THMQDLKPVIGVGLSDSGSLDTVFEVMVRAGR 289
Query: 413 SLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNG 472
+ P MM++P+A + + KAL +Y +++MEPWDGPA ++ TDGR++ +DRNG
Sbjct: 290 TAPMVKMMLVPQALTSSQTTPDNHKALIQYCNSVMEPWDGPAALAMTDGRWVVGGMDRNG 349
Query: 473 LRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVDFEKRIVVDDEALKQQ 532
LRP R+ IT G +I SE G+V I V+ KGRL PG M+ VD + + D LK
Sbjct: 350 LRPMRYTITTDGLIIGGSETGMVKIDETQVIEKGRLGPGEMIAVDLQSGKLYRDRELKDH 409
Query: 533 YSLARPYGEWLQ 544
+ +P+ +W+Q
Sbjct: 410 LATLKPWDKWVQ 421
|
| >d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase, N-terminal domain {Synechocystis sp. [TaxId: 1143]} Length = 430 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Class II glutamine amidotransferases domain: Alpha subunit of glutamate synthase, N-terminal domain species: Synechocystis sp. [TaxId: 1143]
Score = 472 bits (1215), Expect = e-152
Identities = 187/439 (42%), Positives = 269/439 (61%), Gaps = 16/439 (3%)
Query: 115 CGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILVALPHDFFKEAAK 174
CGVGF+A L G+ + AL+ L M HRG C + ++GDGAG++ A+P + +
Sbjct: 1 CGVGFIANLRGKPDHTLVEQALKALGCMEHRGGCSADNDSGDGAGVMTAIPRELLAQWFN 60
Query: 175 NVGFQLPPPGEYAVGMFFLPQSENRREESKKVFTKVAESLGHTVLGWRAVPTDNSGLGNS 234
+P VGM FLPQ + RE ++ +V TVLGWR VP ++ LG
Sbjct: 61 TRNLPMPDGDRLGVGMVFLPQEPSAREVARAYVEEVVRLEKLTVLGWREVPVNSDVLGIQ 120
Query: 235 ALQTEPVVEQVFLT-PSLRSKVDFENQMYILRRVSMAAIRESLNLEHGGAKDFYICSLSS 293
A +P +EQ+ +T P + + + ++YI R + + E DFY+CS S
Sbjct: 121 AKNNQPHIEQILVTCPEGCAGDELDRRLYIARSIIGKKLAE----------DFYVCSFSC 170
Query: 294 RTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRILGHNGE 353
RT+VYKG ++ I + ++Y DL N +TS A+ H RFSTNT P W AQPMR+LGHNGE
Sbjct: 171 RTIVYKGMVRSIILGEFYL-DLKNPGYTSNFAVYHRRFSTNTMPKWPLAQPMRLLGHNGE 229
Query: 354 INTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRS 413
INTL GN+NWM ARE + + G +K E++ L PIV+ ++SDS D LELLVR GRS
Sbjct: 230 INTLLGNINWMAAREK--ELEVSGWTKAELEALTPIVNQANSDSYNLDSALELLVRTGRS 287
Query: 414 LPEAVMMMIPEAWQNDKNMD--PQRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRN 471
EA M+++PEA++N + P+ ++Y+S L EPWDGPAL+ F+DG+ +GA LDRN
Sbjct: 288 PLEAAMILVPEAYKNQPALKDYPEISDFHDYYSGLQEPWDGPALLVFSDGKIVGAGLDRN 347
Query: 472 GLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVDFEKRIVVDDEALKQ 531
GLRP R+ IT +++ SE GVVD+P D++ KGRL PG M+ VD ++ ++ + +KQ
Sbjct: 348 GLRPARYCITKDDYIVLGSEAGVVDLPEVDIVEKGRLAPGQMIAVDLAEQKILKNYQIKQ 407
Query: 532 QYSLARPYGEWLQRQKIEL 550
Q + PYGEW++ Q+ +
Sbjct: 408 QAAQKYPYGEWIKIQRQTV 426
|
| >d1ea0a1 b.80.4.1 (A:1203-1472) Alpha subunit of glutamate synthase, C-terminal domain {Azospirillum brasilense [TaxId: 192]} Length = 270 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Alpha subunit of glutamate synthase, C-terminal domain family: Alpha subunit of glutamate synthase, C-terminal domain domain: Alpha subunit of glutamate synthase, C-terminal domain species: Azospirillum brasilense [TaxId: 192]
Score = 281 bits (719), Expect = 2e-86
Identities = 116/256 (45%), Positives = 158/256 (61%)
Query: 1376 LDQKLIKLSKAALEKALPVYIETPVCNVNRAVGTMLSHEVTKRYHLVGLPADTIHIKLTG 1435
LD +++ ++ E+ + + N RA+GT LS VT+++ + GL I I+L G
Sbjct: 9 LDARIVADARPLFEEGEKMQLAYNARNTQRAIGTRLSSMVTRKFGMFGLQPGHITIRLRG 68
Query: 1436 SAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYG 1495
+AGQS+GAF GI LE+ GD+NDYVGKGLSGG IV P S + N +IGN LYG
Sbjct: 69 TAGQSLGAFAVQGIKLEVMGDANDYVGKGLSGGTIVVRPTTSSPLETNKNTIIGNTVLYG 128
Query: 1496 ATSGEAYFNGMAAERFCVRNSGARAVVEGVGDHGCEYMTGGTVVVLGKTGRNFAAGMSGG 1555
AT+G+ + G A ERF VRNSGA VVEG G +GCEYMTGGT V+LG+ G NFAAGM+GG
Sbjct: 129 ATAGKLFAAGQAGERFAVRNSGATVVVEGCGSNGCEYMTGGTAVILGRVGDNFAAGMTGG 188
Query: 1556 IAYVLDVDGKFRSRCNPELVDLDKVEEEEDIITLRMMIQQHQRYTNSQLAKEVLADFENL 1615
+AYV D+D N E V ++E L+ +I++H T S+ A E+L D+
Sbjct: 189 MAYVYDLDDSLPLYINDESVIFQRIEVGHYESQLKHLIEEHVTETQSRFAAEILNDWARE 248
Query: 1616 LPKFIKVFPRDYKRVL 1631
+ KF +V P++ L
Sbjct: 249 VTKFWQVVPKEMLNRL 264
|
| >d1ofda1 b.80.4.1 (A:1240-1507) Alpha subunit of glutamate synthase, C-terminal domain {Synechocystis sp. [TaxId: 1143]} Length = 268 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Alpha subunit of glutamate synthase, C-terminal domain family: Alpha subunit of glutamate synthase, C-terminal domain domain: Alpha subunit of glutamate synthase, C-terminal domain species: Synechocystis sp. [TaxId: 1143]
Score = 269 bits (688), Expect = 3e-82
Identities = 110/264 (41%), Positives = 150/264 (56%), Gaps = 3/264 (1%)
Query: 1370 HGLDMALDQKLIKLS--KAALEKALPVYIETPVCNVNRAVGTMLSHEVTKRYHLVGLPAD 1427
H LD ++ + A+ + N +R VGT LS + K+Y G
Sbjct: 2 HSNGPVLDDDILADPDIQEAINHQTTATKTYRLVNTDRTVGTRLSGAIAKKYGNNGFE-G 60
Query: 1428 TIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIV 1487
I + G+AGQS GAF G+ L L+G++NDYVGKG++GG+IV P + F P+ N++
Sbjct: 61 NITLNFQGAAGQSFGAFNLDGMTLHLQGEANDYVGKGMNGGEIVIVPHPQASFAPEDNVI 120
Query: 1488 IGNVALYGATSGEAYFNGMAAERFCVRNSGARAVVEGVGDHGCEYMTGGTVVVLGKTGRN 1547
IGN LYGAT G Y NG A ERF VRNS +AV+EG GDH CEYMTGG +VVLG GRN
Sbjct: 121 IGNTCLYGATGGNLYANGRAGERFAVRNSVGKAVIEGAGDHCCEYMTGGVIVVLGPVGRN 180
Query: 1548 FAAGMSGGIAYVLDVDGKFRSRCNPELVDLDKVEEEEDIITLRMMIQQHQRYTNSQLAKE 1607
AGM+GG+AY LD G + NPE++ L ++ + L+ +I H +T S K
Sbjct: 181 VGAGMTGGLAYFLDEVGDLPEKINPEIITLQRITASKGEEQLKSLITAHVEHTGSPKGKA 240
Query: 1608 VLADFENLLPKFIKVFPRDYKRVL 1631
+LA++ + L KF + P K
Sbjct: 241 ILANWSDYLGKFWQAVPPSEKDSP 264
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} Length = 329 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Score = 153 bits (387), Expect = 3e-41
Identities = 55/365 (15%), Positives = 108/365 (29%), Gaps = 63/365 (17%)
Query: 996 IPLEEVEPASEIVKR-----FCTGAMSYGS--ISLEAHTTLATAMNKIGGKSNTGEGGEQ 1048
+ LE+V+ +++I + AM+ G ++ E + +LA A ++ G G
Sbjct: 18 LALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQ--- 74
Query: 1049 PSRMEPLSDGSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHK 1108
+ + S R N + L +
Sbjct: 75 ----------------MSALKDPSERLSYEIVRKENPNGLIFANLGSEATAAQAKEAVEM 118
Query: 1109 VIGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGV 1168
+ + + ++ +++ + Q+ + + VK V
Sbjct: 119 IGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVSV-----PVIVKEVGFGMSKA 173
Query: 1169 IASGVVKGHADHVLISGHDGGTGAS--RWTGIKNAGLPWELGLAETHQTLVANDLRGRTI 1226
A + + A V I G+ G + + G++ +
Sbjct: 174 SAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPAST 233
Query: 1227 LQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLRE 1286
+ G L+ DVA A LGA G + L L
Sbjct: 234 MIASGGLQDALDVAKAIALGASCTGMAGHFLKAL-------------------------- 267
Query: 1287 KFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVDKEVTKTNEKLENIDL 1346
E ++ ++ EEL+ IM+ LG RTI ++ + L + E T ++
Sbjct: 268 -TDSGEEGLLEEIQLILEELKLIMTVLGARTIADL--QKAPLVIKGE-THHWLTERGVNT 323
Query: 1347 SLLLR 1351
S
Sbjct: 324 SSYSV 328
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Score = 116 bits (290), Expect = 1e-28
Identities = 59/344 (17%), Positives = 98/344 (28%), Gaps = 61/344 (17%)
Query: 995 KIPLEEVEPASEIVKR-----FCTGAMSYGSISL-EAHTTLATAMNKIGGKSNTGEGGEQ 1048
+ L EV+ + + + F GAM+ G + + LA A +G G G
Sbjct: 18 GLALSEVDLTTPFLGKTLKAPFLIGAMTGGEENGERINLALAEAAEALGVGMMLGSGR-- 75
Query: 1049 PSRMEPLSDGSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHK 1108
+ A F V + +AQ + G L +
Sbjct: 76 ---------------ILLERPEALRSFRVRKVAPKALLIANLGLAQLRRYGRDDLLRLVE 120
Query: 1109 VIGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGV 1168
++ A+ + + +E LA+L+ + VK V
Sbjct: 121 MLEADALAFHVNPLQEAVQRGDTDFRGLVERLAELL------PLPFPVMVKEVGHGLSRE 174
Query: 1169 IASGVVKGHADHVLISGHDGGTG----ASRWTGIKNAGLPWELGLAETHQTLVANDLRGR 1224
A + V ++G G + G E+G+ L ++
Sbjct: 175 AALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPH 234
Query: 1225 TILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVL 1284
L G + TG D A A LGA+ + L
Sbjct: 235 LPLVASGGVYTGTDGAKALALGADLLAVARPLLRPA------------------------ 270
Query: 1285 REKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDML 1328
E V + EELR + +G R E GR + +
Sbjct: 271 ----LEGAERVAAWIGDYLEELRTALFAIGARNPKEARGRVERV 310
|
| >d1gtea1 a.1.2.2 (A:2-183) Dihydropyrimidine dehydrogenase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 182 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Globin-like superfamily: alpha-helical ferredoxin family: Dihydropyrimidine dehydrogenase, N-terminal domain domain: Dihydropyrimidine dehydrogenase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 44.2 bits (104), Expect = 3e-05
Identities = 9/73 (12%), Positives = 23/73 (31%), Gaps = 3/73 (4%)
Query: 1687 EPTKRPSR--VADAVKHRGFIAYEREGVQYRDP-NIRMNDWKEVMEESKPGPLLKTQSAR 1743
P + + K ++R + N++ ++ + ++ R
Sbjct: 18 NPRTQSHAALHSTLAKKLDKKHWKRNPDKNCFHCEKLENNFDDIKHTTLGERGALREAMR 77
Query: 1744 CMDCGTPFCHQVC 1756
C+ C C + C
Sbjct: 78 CLKCADAPCQKSC 90
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 414 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.3 bits (106), Expect = 6e-05
Identities = 31/153 (20%), Positives = 49/153 (32%), Gaps = 29/153 (18%)
Query: 1177 HADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTG 1236
G G ++ + LAET L +L+ + + DG ++ G
Sbjct: 259 DVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRG 318
Query: 1237 RDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVI 1296
DV A LGA+ G L C G V
Sbjct: 319 TDVLKALCLGAKGVGLGRPFLYANSC--------------------------YGR-NGVE 351
Query: 1297 NFFFMLAEELREIMSQLGFRTITEMIGRSDMLE 1329
+L +E+ M LG +I E+ + D+L+
Sbjct: 352 KAIEILRDEIEMSMRLLGVTSIAEL--KPDLLD 382
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1760 | |||
| d1ofda2 | 809 | Alpha subunit of glutamate synthase, central and F | 100.0 | |
| d1ea0a2 | 771 | Alpha subunit of glutamate synthase, central and F | 100.0 | |
| d1ofda3 | 430 | Alpha subunit of glutamate synthase, N-terminal do | 100.0 | |
| d1ea0a3 | 422 | Alpha subunit of glutamate synthase, N-terminal do | 100.0 | |
| d1ea0a1 | 270 | Alpha subunit of glutamate synthase, C-terminal do | 100.0 | |
| d1ofda1 | 268 | Alpha subunit of glutamate synthase, C-terminal do | 100.0 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 100.0 | |
| d1tb3a1 | 349 | Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI | 100.0 | |
| d1kbia1 | 414 | Flavocytochrome b2, C-terminal domain {Baker's yea | 100.0 | |
| d1goxa_ | 359 | Glycolate oxidase {Spinach (Spinacia oleracea) [Ta | 100.0 | |
| d1vcfa1 | 310 | Isopentenyl-diphosphate delta-isomerase {Thermus t | 100.0 | |
| d1p4ca_ | 353 | Membrane-associated (S)-mandelate dehydrogenase {P | 100.0 | |
| d1ecfa2 | 249 | Glutamine PRPP amidotransferase, N-terminal domain | 99.95 | |
| d1gph12 | 234 | Glutamine PRPP amidotransferase, N-terminal domain | 99.93 | |
| d1xffa_ | 238 | Glucosamine 6-phosphate synthase, N-terminal domai | 99.93 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 99.86 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 99.86 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 99.84 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 99.81 | |
| d1te5a_ | 253 | Hypothetical protein YafJ (PA1307) {Pseudomonas ae | 99.73 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 99.72 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 99.7 | |
| d1ct9a2 | 192 | Asparagine synthetase B, N-terminal domain {Escher | 99.61 | |
| d1jgta2 | 206 | beta-Lactam synthetase {Streptomyces clavuligerus | 99.53 | |
| d1juba_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 99.41 | |
| d1tv5a1 | 409 | Dihydroorotate dehydrogenase {Plasmodium falciparu | 99.4 | |
| d1d3ga_ | 367 | Dihydroorotate dehydrogenase {Human (Homo sapiens) | 99.29 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 99.27 | |
| d1ep3a_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 99.23 | |
| d1ofda1 | 268 | Alpha subunit of glutamate synthase, C-terminal do | 99.17 | |
| d2b4ga1 | 312 | Dihydroorotate dehydrogenase {Trypanosoma brucei [ | 99.13 | |
| d1gtea1 | 182 | Dihydropyrimidine dehydrogenase, N-terminal domain | 98.92 | |
| d1ea0a1 | 270 | Alpha subunit of glutamate synthase, C-terminal do | 98.79 | |
| d1q15a2 | 204 | beta-Lactam synthetase {Pectobacterium carotovorum | 98.78 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 98.74 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 98.68 | |
| d1ea0a2 | 771 | Alpha subunit of glutamate synthase, central and F | 98.67 | |
| d1ofda2 | 809 | Alpha subunit of glutamate synthase, central and F | 98.65 | |
| d1f76a_ | 336 | Dihydroorotate dehydrogenase {Escherichia coli [Ta | 98.56 | |
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 97.84 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 97.64 | |
| d1djqa1 | 340 | Trimethylamine dehydrogenase, N-terminal domain {M | 97.58 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 97.5 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 97.41 | |
| d1wv2a_ | 243 | Thiazole biosynthesis protein ThiG {Pseudomonas ae | 97.3 | |
| d1kbia1 | 414 | Flavocytochrome b2, C-terminal domain {Baker's yea | 97.19 | |
| d1mzha_ | 225 | Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli | 97.18 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 97.11 | |
| d1o0ya_ | 251 | Deoxyribose-phosphate aldolase DeoC {Thermotoga ma | 97.02 | |
| d1vcfa1 | 310 | Isopentenyl-diphosphate delta-isomerase {Thermus t | 96.94 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 96.82 | |
| d1tb3a1 | 349 | Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI | 96.78 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 96.62 | |
| d1n7ka_ | 234 | Deoxyribose-phosphate aldolase DeoC {Archaeon Aero | 96.24 | |
| d1p1xa_ | 250 | Deoxyribose-phosphate aldolase DeoC {Escherichia c | 96.12 | |
| d1p4ca_ | 353 | Membrane-associated (S)-mandelate dehydrogenase {P | 95.93 | |
| d2a4aa1 | 256 | Fructose-1,6-bisphosphate aldolase {Plasmodium yoe | 95.76 | |
| d1hg3a_ | 224 | Triosephosphate isomerase {Archaeon Pyrococcus woe | 95.71 | |
| d1goxa_ | 359 | Glycolate oxidase {Spinach (Spinacia oleracea) [Ta | 95.53 | |
| d1q45a_ | 380 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 95.34 | |
| d1w0ma_ | 226 | Triosephosphate isomerase {Thermoproteus tenax [Ta | 95.3 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 95.29 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 95.12 | |
| d1vcva1 | 226 | Deoxyribose-phosphate aldolase DeoC {Archaeon Pyro | 95.04 | |
| d1znna1 | 254 | Pyridoxal biosynthesis lyase PdxS {Bacillus stearo | 94.52 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 92.53 | |
| d1gwja_ | 374 | Morphinone reductase {Pseudomonas putida [TaxId: 3 | 92.39 | |
| d1oyaa_ | 399 | Old yellow enzyme (OYE) {Lager yeast (Saccharomyce | 91.48 | |
| d1qpoa1 | 169 | Quinolinic acid phosphoribosyltransferase (Nicotin | 91.45 | |
| d1ecfa2 | 249 | Glutamine PRPP amidotransferase, N-terminal domain | 90.2 | |
| d1xi3a_ | 206 | Thiamin phosphate synthase {Archaeon (Pyrococcus f | 90.11 | |
| d1xffa_ | 238 | Glucosamine 6-phosphate synthase, N-terminal domai | 89.95 | |
| d1gph12 | 234 | Glutamine PRPP amidotransferase, N-terminal domain | 89.32 | |
| d1icpa_ | 364 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 88.93 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 88.43 | |
| d1ujpa_ | 271 | Trp synthase alpha-subunit {Thermus thermophilus [ | 87.89 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 87.75 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 86.68 | |
| d1l6wa_ | 220 | Decameric fructose-6-phosphate aldolase/transaldol | 83.85 | |
| d1q6oa_ | 213 | 3-keto-L-gulonate 6-phosphate decarboxylase {Esche | 83.12 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 82.84 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 82.49 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 82.13 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 81.71 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 81.2 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 80.7 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 80.67 | |
| d1i4na_ | 251 | Indole-3-glycerophosphate synthase, IPGS {Thermoto | 80.23 |
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Probab=100.00 E-value=0 Score=1877.93 Aligned_cols=746 Identities=49% Similarity=0.829 Sum_probs=713.0
Q ss_pred CCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 04057799749999999986988982035222456778776444567530268885504333499999643221055346
Q 000266 586 HGLLAPLKAFGYTVEALEMLMLPMAKDGTEALGSMGNDAPLAVMSNREKLTFEYFKQMFAQVTNPPIDPIREKIVTSMEC 665 (1760)
Q Consensus 586 ~~l~~~~~~fgyt~e~~~~~l~pMa~~g~E~igSMG~D~PLA~ls~~p~~l~dYFkQ~FAQVTNPPIDpiRE~~vmSl~~ 665 (1760)
++|++||++||||.||++++|.||+++|+||+|||||||||||||++||+|||||||+||||||||||||||++||||+|
T Consensus 11 ~~l~~rq~aFGyt~Ed~~~il~PMa~~g~EpigSMG~DtPLAvLS~~~r~l~~YFkQ~FAQVTNPPID~iRE~~VmSl~~ 90 (809)
T d1ofda2 11 QTVLQQQAAFGYTAEDVEMVVVPMASQGKEPTFCMGDDTPLAVLSHKPRLLYDYFKQRFAQVTNPPIDPLRENLVMSLAM 90 (809)
T ss_dssp HHHHHHHHHTTCCHHHHHHTHHHHHHHSSCCEECSCCCSCCTTTCSSCCCGGGGEEECCCCSSSCCCCTTTTGGGCBCCE
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCHHHHHCCCCCCC
T ss_conf 99999999828999999999999985588510458777476723699888510045365647889866777642431554
Q ss_pred EECCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 20499988989967646179537734999999999604799704899988507979123999999999999999985992
Q 000266 666 MIGPEGVLTETTEEQCHRLSLKGPLLSIEEMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYT 745 (1760)
Q Consensus 666 ~lG~~~n~l~~~~~~~~rl~L~sPIL~~~el~~lk~~~~~~~~~~~id~tf~~~~g~~gL~~aL~~l~~eA~~Av~~G~~ 745 (1760)
+||+++|||++++++|++|.|+||||++.||++|++ .+|++.+||++|+.+ |..+|++||++||++|++||++|++
T Consensus 91 ~lG~~~Nil~~~~~~~~~l~l~sPiLs~~el~~i~~---~~~~~~~i~~~f~~~-g~~~L~~aL~~l~~ea~~AV~~G~~ 166 (809)
T d1ofda2 91 FLGKRGNLLEPKAESARTIKLRSPLVNEVELQAIKT---GQLQVAEVSTLYDLD-GVNSLEDALTNLVKTAIATVQAGAE 166 (809)
T ss_dssp EESCCCCSSSCCGGGGCEEEESCSBCCHHHHHHHHH---SSSCEEEEECEEECS-SSCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred EECCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHC---CCCCEEEEEEEECCC-CHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 115887789999777786997997069999999972---899627986785177-5078999999999999999977994
Q ss_pred EEEECCCC----CCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 99980899----88998643299988999999997397771019995098786789999984080000279999999999
Q 000266 746 LLVLSDRA----FSSKRVAVSSLLAVGAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAICPYLATEAIWRL 821 (1760)
Q Consensus 746 iiVLSDr~----~~~~~~~ip~lLAvgaVh~~Li~~glR~~vsLIvesge~RevHh~a~LlGyGAdAV~PYla~e~i~~~ 821 (1760)
|||||||+ ++.+++|||+||||||||||||++|||+++||||||||+||+|||||||||||+|||||||||++.+|
T Consensus 167 ilILSDR~~~~~i~~~~~~IP~lLAv~AVH~~Lir~gLR~~~sLVveSGe~revHh~A~LiGyGA~AVnPYLA~eti~~~ 246 (809)
T d1ofda2 167 ILVLTDRPNGAILTENQSFIPPLLAVGAVHHHLIRAGLRLKASLIVDTAQCWSTHHFACLVGYGASAICPYLALESVRQW 246 (809)
T ss_dssp EEEEESSGGGCCCCTTEEECCHHHHHHHHHHHHHHTTCGGGCEEEEECSSCCSHHHHHHHHHTTCSEEECHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 89970666555457774423299999999999997287740134442488887777698871438877689999999998
Q ss_pred HH---------CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCHHHHCCCCHHHHHHHCCCCC
Q ss_conf 97---------499999999998999999999999999999999985162334013334102203999789941169997
Q 000266 822 QV---------DGKIPPKASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEALGLSSEVIEKCFAGTP 892 (1760)
Q Consensus 822 ~~---------~g~~~~~~~~~~~~~~~~~~ny~~Ai~~GilKVMSKMGISTl~SY~GAQiFea~GL~~~vv~~~F~gt~ 892 (1760)
.. ++.+ ..++.+++++||+||++|||||||||||||||+||+||||||||||+++|||+||+||+
T Consensus 247 ~~~~~~~~~~~~~~~------~~~~~~~a~~Ny~kAi~kGLLKIMSKMGISTl~SYrGaqiFEaIGLs~evvd~~F~gt~ 320 (809)
T d1ofda2 247 WLDEKTQKLMENGRL------DRIDLPTALKNYRQSVEAGLFKILSKMGISLLASYHGAQIFEAIGLGAELVEYAFAGTT 320 (809)
T ss_dssp HSCHHHHHHHTTSSC------CCCCHHHHHHHHHHHHHHHHHHHHHHTTCCBHHHHHTCCCEEESSBCHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHCCCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHCC
T ss_conf 631123333321676------66899999999999999999999977333453232010010100424788999864110
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHC----------C
Q ss_conf 776788968999999999997089999999996686799997300024897655698999999999913----------9
Q 000266 893 SRVDGATFEVLASDALHLHELAFPTRILPPGSAEAVALPNPGDYHWRKGGEIHLNDPLAIAKLQEAARG----------N 962 (1760)
Q Consensus 893 sri~G~~~~~i~~~~~~~h~~a~~~~~~~~~~~~~~~l~~~g~y~~r~~ge~H~~~p~~i~~lq~a~~~----------~ 962 (1760)
|||+|++|++|++|.+.||+.||+.. ...|+.+|+|+||++||+|+|||++|++||+|+|+ +
T Consensus 321 SrI~Gigl~~I~~e~~~rh~~a~~~~--------~~~L~~gG~y~~R~~GE~H~~nP~~i~~LQ~avr~~~~~~~~n~~~ 392 (809)
T d1ofda2 321 SRVGGLTIADVAGEVMVFHGMAFPEM--------AKKLENFGFVNYRPGGEYHMNSPEMSKSLHKAVAAYKVGGNGNNGE 392 (809)
T ss_dssp CTTCCBCHHHHHHHHHHHHHHHC------------CCCCCCSSSSCCTTSSCCSCCHHHHHHHHHHHHHC----------
T ss_pred CHHCCCCHHHHHHHHHHHHHHHHCCC--------CCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 01057789999999999997640222--------4776666653553266556899899999999888654202446777
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEC
Q ss_conf 98999999999760026754334334456789999888777333346447457984347499999999999970996321
Q 000266 963 SVAAYKEYSKRIQELNKTCNLRGLLKFKEADVKIPLEEVEPASEIVKRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNT 1042 (1760)
Q Consensus 963 ~~~~~~~y~~~~~~~~~~~~~r~ll~~~~~~~~i~~~~Ve~~t~i~~Pf~isaMS~Gsls~ea~~aLA~Aa~~~G~~s~s 1042 (1760)
+|+.|+.|+...+++ +++++|+||+|+..+.|||+++|||+++|++||.+++||||++|+++|++||+||+++|+++||
T Consensus 393 ~Y~~y~~~~~~~~~~-~~~~lR~Ll~~k~~~~pIpldeVEp~~~I~k~f~~~aMS~GslS~~a~~ala~aa~~~G~~~nt 471 (809)
T d1ofda2 393 AYDHYELYRQYLKDR-PVTALRDLLDFNADQPAISLEEVESVESIVKRFCTGGMSLGALSREAHETLAIAMNRLGAKSNS 471 (809)
T ss_dssp --CHHHHHHHHHHTC-CSCSGGGGEEECCSSCCCCGGGSCCHHHHHTTEECCCBCTTTSCHHHHHHHHHHHHHHTCBCEE
T ss_pred HHHHHHHHHHHHHCC-CHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCEECC
T ss_conf 899999999998617-8025787754302579987443321654212202455554455689999999999971865337
Q ss_pred CCCCCCCCCCCCC------------------CCCCCCHHHHHEEECCCCCCCCCHHHHCCCHHHHHHHHCCCCCCCCCCC
Q ss_conf 6999992365767------------------8999841343123214488677956434712677766305788988987
Q 000266 1043 GEGGEQPSRMEPL------------------SDGSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGEL 1104 (1760)
Q Consensus 1043 GeGg~~~e~~~~~------------------~~g~~~~~~s~IkQvasgrFGvt~~~L~~a~~ieIKiaQGAKpG~GG~L 1104 (1760)
||||++|+++... .+| +...+.|+|++|+|||||++||.++++||||++||||||+||+|
T Consensus 472 GEGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~s~i~q~asgrfGv~~~~l~~~~~ieIK~~QGAKPG~GG~L 549 (809)
T d1ofda2 472 GEGGEDVVRYLTLDDVDSEGNSPTLPHLHGLQNG--DTANSAIKQIASGRFGVTPEYLMSGKQLEIKMAQGAKPGEGGQL 549 (809)
T ss_dssp CTTCCCGGGGSCCCCCCTTSCCTTSTTCCSCCTT--CCCCCSEEEECTTCTTCCHHHHHHCSEEEEECCCTTSTTSCCEE
T ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC--CCCCCHHHHHHHCCCCCCHHHHCCCCEEEEEEECCCCCCCCCCC
T ss_conf 8888884565326764332576543223465578--87734567522002587755522543278987214556655213
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 87542189998808988633338999999999998999999999739999268998113688999999998499799992
Q 000266 1105 PGHKVIGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLIS 1184 (1760)
Q Consensus 1105 pg~kv~~~IA~~r~~~~G~~lisP~~h~diySiEdL~qlI~~Lr~~~p~~pI~VKlv~~~Gig~vA~~aakaGAD~IvIs 1184 (1760)
|+.||+++||++|+++||++++|||+||||||||||+|+|++||+.||++||+||+++..|+++++.+++|+|+|+|+||
T Consensus 550 pg~KVt~~IA~~R~~~~G~~liSP~~h~diysiedL~q~I~~Lr~~~~~~pv~vKl~~~~g~~~ia~~vaka~aD~I~Id 629 (809)
T d1ofda2 550 PGKKVSEYIAMLRRSKPGVTLISPPPHHDIYSIEDLAQLIYDLHQINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQIS 629 (809)
T ss_dssp CGGGCCHHHHHHHTSCTTCCEECCSSCTTCSSHHHHHHHHHHHHHHCTTSEEEEEEECSTTHHHHHHHHHHTTCSEEEEE
T ss_pred CHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHCCCCEEEEE
T ss_conf 43104788881117899988789887888889999999999999717999659999554370899987763479889983
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCC
Q ss_conf 39999899852221246888899999999998847999840999869867999999999919981123516799830100
Q 000266 1185 GHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIM 1264 (1760)
Q Consensus 1185 G~~GGTGaa~~~si~~~GlP~~~~L~ev~q~L~~~glr~rV~IiadGGIrtG~DV~KALaLGAdaVgiGta~L~algc~~ 1264 (1760)
|++|||||+|+++++|+|+||+.+|+++|++|+++|+|++|.||+|||++||.|++||++||||+|++||++|+++||+|
T Consensus 630 G~eGGTGAap~~~~~~~GlP~~~gl~~a~~~L~~~glR~~V~Lia~Ggl~t~~Dv~ka~aLGAD~v~~gt~~l~alGCi~ 709 (809)
T d1ofda2 630 GHDGGTGASPLSSIKHAGSPWELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIAEGCIM 709 (809)
T ss_dssp CTTCCCSSEEHHHHHHBCCCHHHHHHHHHHHHHHTTCGGGCEEEEESSCCSHHHHHHHHHTTCSEEECSHHHHHHTTCCC
T ss_pred CCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCHH
T ss_conf 78876654667788608854899999999999976998744999818988899999999828892667489999987899
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEECCCCCCCCHHHHCCC
Q ss_conf 11343598987322139356742089899999999999999999999529988333208974132130001330101389
Q 000266 1265 MRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVDKEVTKTNEKLENI 1344 (1760)
Q Consensus 1265 ~r~c~~~~cp~giatqdp~lr~~~~g~~e~V~n~l~~l~~ELr~~Ma~lG~~si~elvgr~dll~~~~~~~~~~~~~~~~ 1344 (1760)
||+||+|+||||||||||.|+++|++.+++|+|||..+.+|++++|+.+|+++++|++||+|+|...... ..||..+|
T Consensus 710 ~r~Ch~n~CP~GIaTqd~~l~~~~~~~~~~v~n~~~~~~~e~~~~~a~~G~~s~~elvGr~dll~~~~~~--~~~~~~~l 787 (809)
T d1ofda2 710 ARVCHTNNCPVGVATQQERLRQRFKGVPGQVVNFFYFIAEEVRSLLAHLGYRSLDDIIGRTDLLKVRSDV--QLSKTQNL 787 (809)
T ss_dssp CCCGGGTCCTTSSSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHTCSCGGGTTTCGGGEEECSSC--CCSSSSCC
T ss_pred HHHHCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHCCCC--CCHHHCCC
T ss_conf 6762799899841478988984476727999999999999999999997699978934747654104432--31322487
Q ss_pred CCCCCCCCCC
Q ss_conf 9723457655
Q 000266 1345 DLSLLLRPAA 1354 (1760)
Q Consensus 1345 dls~~l~~~~ 1354 (1760)
||+.||..+.
T Consensus 788 ~~~~ll~~~~ 797 (809)
T d1ofda2 788 TLDCLLNLPD 797 (809)
T ss_dssp CCHHHHCCCC
T ss_pred CHHHHHCCCC
T ss_conf 8799836898
|
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Probab=100.00 E-value=0 Score=1861.23 Aligned_cols=747 Identities=48% Similarity=0.777 Sum_probs=720.1
Q ss_pred CCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 04057799749999999986988982035222456778776444567530268885504333499999643221055346
Q 000266 586 HGLLAPLKAFGYTVEALEMLMLPMAKDGTEALGSMGNDAPLAVMSNREKLTFEYFKQMFAQVTNPPIDPIREKIVTSMEC 665 (1760)
Q Consensus 586 ~~l~~~~~~fgyt~e~~~~~l~pMa~~g~E~igSMG~D~PLA~ls~~p~~l~dYFkQ~FAQVTNPPIDpiRE~~vmSl~~ 665 (1760)
.+|.++|++||||.||++++|.||+++|+||+|||||||||||||++||+|||||||+||||||||||||||++||||++
T Consensus 23 ~~L~~~q~aFGyt~Ed~~~il~pMa~~g~EpiGSMG~DtPlAvLS~~~r~l~~YFkQ~FAQVTNPPID~iRE~~VmSl~~ 102 (771)
T d1ea0a2 23 AELRRRQQAFGLTMEDMELILHPMVEDGKEAIGSMGDDSPIAVLSDKYRGLHHFFRQNFSQVTNPPIDSLRERRVMSLKT 102 (771)
T ss_dssp HHHHHHHHTTTCCHHHHHTTTHHHHHHSSCCEECSCCCSCCGGGCSSCCCGGGTEEECCCCSSSCCCCTTTTGGGCCCCE
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCHHHHHCCCCCCC
T ss_conf 99999999838999999999999985588630568877265612699887402145575656889866777551231531
Q ss_pred EECCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 20499988989967646179537734999999999604799704899988507979123999999999999999985992
Q 000266 666 MIGPEGVLTETTEEQCHRLSLKGPLLSIEEMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYT 745 (1760)
Q Consensus 666 ~lG~~~n~l~~~~~~~~rl~L~sPIL~~~el~~lk~~~~~~~~~~~id~tf~~~~g~~gL~~aL~~l~~eA~~Av~~G~~ 745 (1760)
+||+++|||++++.+|++|+|+||||++.||++|++. .+|++++||++|+.+.+.++|++||++||++|++||++|++
T Consensus 103 ~lG~~~Nil~~~~~~~~~l~l~sPILs~~e~~~i~~~--~~~~~~~id~~f~~~~g~~~L~~AL~~l~~eA~~AV~~G~~ 180 (771)
T d1ea0a2 103 RLGNLGNILDEDETQTRLLQLESPVLTTAEFRAMRDY--MGDTAAEIDATFPVDGGPEALRDALRRIRQETEDAVRGGAT 180 (771)
T ss_dssp EESCCSCTTCCSGGGSCSEEESCSBCCHHHHHHHHHH--HGGGEEEEECEEESTTCTTHHHHHHHHHHHHHHHHHHHTCC
T ss_pred EECCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHCC--CCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 2479988899985679979928985489999999716--89973899989857788489999999999999999848992
Q ss_pred EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99980899889986432999889999999973977710199950987867899999840800002799999999999749
Q 000266 746 LLVLSDRAFSSKRVAVSSLLAVGAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAICPYLATEAIWRLQVDG 825 (1760)
Q Consensus 746 iiVLSDr~~~~~~~~ip~lLAvgaVh~~Li~~glR~~vsLIvesge~RevHh~a~LlGyGAdAV~PYla~e~i~~~~~~g 825 (1760)
|||||||+++++++|||+||||||||||||++|+|+++||||||||+||+||||||+||||+|||||||||++.++...+
T Consensus 181 ilILSDr~~~~~~~~IP~LLAv~aVHh~Lir~gLR~~~sIIveSGeare~Hh~A~LiGyGA~AV~PYLa~e~i~~~~~~~ 260 (771)
T d1ea0a2 181 HVILTDEAMGPARAAIPAILATGAVHTHLIRSNLRTFTSLNVRTAEGLDTHYFAVLIGVGATTVNAYLAQEAIAERHRRG 260 (771)
T ss_dssp EEEEECTTCBTTEEECCHHHHHHHHHHHHHTTTCGGGCEEEEECSSCCSHHHHHHHHTTTCSEEECHHHHHHHHHHHTTT
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 89982345664200367899988899999971877532167750035514550410102522248389999999987544
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCHHHHCCCCHHHHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf 99999999989999999999999999999999851623340133341022039997899411699977767889689999
Q 000266 826 KIPPKASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEALGLSSEVIEKCFAGTPSRVDGATFEVLAS 905 (1760)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~ny~~Ai~~GilKVMSKMGISTl~SY~GAQiFea~GL~~~vv~~~F~gt~sri~G~~~~~i~~ 905 (1760)
.. . ..+.+++++||++|++|||||||||||||||+||+||||||||||+++||++||+||+|||+|++|++|++
T Consensus 261 ~~-----~-~~~~~~a~~ny~kAi~kGLlKIMSKMGIStl~SY~GaqiFEaiGLs~~vi~~~F~gt~Sri~Gigl~~i~~ 334 (771)
T d1ea0a2 261 LF-----G-SMPLEKGMANYKKAIDDGLLKIMSKMGISVISSYRGGGNFEAIGLSRALVAEHFPAMVSRISGIGLNGIQK 334 (771)
T ss_dssp TT-----T-TCCHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHTTSCCEEESSBCHHHHHHHSSSCCCSSCCBCHHHHHH
T ss_pred HC-----C-CCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf 13-----5-78899999999999999999998773332355777766530045226778641688787646668789999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999997089999999996686799997300024897655698999999999913998999999999760026754334
Q 000266 906 DALHLHELAFPTRILPPGSAEAVALPNPGDYHWRKGGEIHLNDPLAIAKLQEAARGNSVAAYKEYSKRIQELNKTCNLRG 985 (1760)
Q Consensus 906 ~~~~~h~~a~~~~~~~~~~~~~~~l~~~g~y~~r~~ge~H~~~p~~i~~lq~a~~~~~~~~~~~y~~~~~~~~~~~~~r~ 985 (1760)
|++.||+.||+.+ ...|+.+|+|+||++||+|.|||.+|++||+|+|+++|+.|+.|++.++++ +++++|+
T Consensus 335 e~~~rh~~A~~~~--------~~~L~~gG~y~~r~~GE~H~~nP~~i~~LQ~A~r~~~y~~yk~y~~~i~~~-~~~~LR~ 405 (771)
T d1ea0a2 335 KVLEQHATAYNEE--------VVALPVGGFYRFRKSGDRHGWEGGVIHTLQQAVTNDSYTTFKKYSEQVNKR-PPMQLRD 405 (771)
T ss_dssp HHHHHHHHHHSSC--------CSSCCCCCSSSCCSSSSCCSSCHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-CCCSGGG
T ss_pred HHHHHHHHHCCCC--------CCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHHHHH
T ss_conf 9999999861345--------566788872564117975467889999999998509999999999999724-3678987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 33445678999988877733334644745798434749999999999997099632169999923657678999841343
Q 000266 986 LLKFKEADVKIPLEEVEPASEIVKRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRS 1065 (1760)
Q Consensus 986 ll~~~~~~~~i~~~~Ve~~t~i~~Pf~isaMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGg~~~e~~~~~~~g~~~~~~s 1065 (1760)
||+|++.+.|||+++|||+++|++||.+++||||+||+++|++||+||+++|+.+||||||++|+++....++ +...+
T Consensus 406 Ll~~~~~~~pI~i~eVE~~~~I~k~f~isaMSfGALS~~A~~aLa~ga~~~g~~~ntGEGG~~~~~~~~~~~~--~~~~~ 483 (771)
T d1ea0a2 406 LLELRSTKAPVPVDEVESITAIRKRFITPGMSMGALSPEAHGTLNVAMNRIGAKSDSGEGGEDPARFRPDKNG--DNWNS 483 (771)
T ss_dssp GEEECCSSCCCCGGGSCCHHHHHTTEEEEECCBTTBCHHHHHHHHHHHHHTTCEEECCTTCCCGGGSSBCTTS--CBCCC
T ss_pred HHHHCCCCCCCCCCCCCCHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCHHHCCCCCCC--CCCCC
T ss_conf 6764268999654445322221003023653455557999999999999619765637999885550126898--64332
Q ss_pred HEEECCCCCCCCCHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 12321448867795643471267776630578898898787542189998808988633338999999999998999999
Q 000266 1066 AIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIY 1145 (1760)
Q Consensus 1066 ~IkQvasgrFGvt~~~L~~a~~ieIKiaQGAKpG~GG~Lpg~kv~~~IA~~r~~~~G~~lisP~~h~diySiEdL~qlI~ 1145 (1760)
.|+|++|+||||+.+|+.++++||||++||||||+||+||+.||+++||++|+++||++++||++||||||+|||+|+|+
T Consensus 484 ~i~q~asgrfG~~~~~l~~~~~ieIK~~QGAKpG~GG~Lpg~KVt~~IA~~R~~~~G~~~iSP~~h~di~siedL~~~I~ 563 (771)
T d1ea0a2 484 AIKQVASGRFGVTAEYLNQCRELEIKVAQGAKPGEGGQLPGFKVTEMIARLRHSTPGVMLISPPPHHDIYSIEDLAQLIY 563 (771)
T ss_dssp SEEEECSSCTTCCHHHHTSCSEEEEECCCTTSTTTCCEECGGGCCHHHHHHHTCCTTCCEECCSSCTTCSSHHHHHHHHH
T ss_pred CCCEECCCCCCCCHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 10045577677697884333116776403455565430340227899997638999988557877888999999999999
Q ss_pred HHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 99973999926899811368899999999849979999239999899852221246888899999999998847999840
Q 000266 1146 DLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRT 1225 (1760)
Q Consensus 1146 ~Lr~~~p~~pI~VKlv~~~Gig~vA~~aakaGAD~IvIsG~~GGTGaa~~~si~~~GlP~~~~L~ev~q~L~~~glr~rV 1225 (1760)
+||+.+|++||+||+++..++++++.+++|+|+|+|+|||++|||||+|+++++|+|+||+.+|++++++|+++|+|++|
T Consensus 564 ~Lr~~~~~~pv~vKl~~~~~~~~i~~~v~ka~~D~I~IdG~eGGTGAap~~~~d~~GlP~~~~l~~~~~~L~~~glr~~V 643 (771)
T d1ea0a2 564 DLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRV 643 (771)
T ss_dssp HHHHHCTTCEEEEEEECCTTHHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHHHHHHHHTTTCTTTS
T ss_pred HHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCE
T ss_conf 99962799987999877674899999987358988997168876666667776068737999999999999976998753
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 99986986799999999991998112351679983010011343598987322139356742089899999999999999
Q 000266 1226 ILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEE 1305 (1760)
Q Consensus 1226 ~IiadGGIrtG~DV~KALaLGAdaVgiGta~L~algc~~~r~c~~~~cp~giatqdp~lr~~~~g~~e~V~n~l~~l~~E 1305 (1760)
.||+|||++||.||+||++||||+|++||++|+|+||+|||+||+|+||+|||||||+|+++|.+.+++|.||+..+.+|
T Consensus 644 ~l~a~Ggl~t~~Dv~ka~aLGAD~v~~gt~~m~alGCi~~r~Ch~~~CP~GIaTqd~~lr~~~~~~~~~v~n~~~~~~~e 723 (771)
T d1ea0a2 644 RLRTDGGLKTGRDIVIAAMLGAEEFGIGTASLIAMGCIMVRQCHSNTCPVGVCVQDDKLRQKFVGTPEKVVNLFTFLAEE 723 (771)
T ss_dssp EEEEESSCCSHHHHHHHHHTTCSEEECCHHHHHHHTCCCCCCTTTTCCTTSSSCCCTTGGGSCCCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHCCCCCCCCEEECCCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99970898889999999983789167769999996289851436998998430689889854667389999999999999
Q ss_pred HHHHHHHCCCCCHHHHCCCCCEEECCCCCCCCHHHHCCCCCCCCCCCCC
Q ss_conf 9999995299883332089741321300013301013899723457655
Q 000266 1306 LREIMSQLGFRTITEMIGRSDMLEVDKEVTKTNEKLENIDLSLLLRPAA 1354 (1760)
Q Consensus 1306 Lr~~Ma~lG~~si~elvgr~dll~~~~~~~~~~~~~~~~dls~~l~~~~ 1354 (1760)
++++|+.+|+++++|++||+|++...+.. ..+...|||+++|..+.
T Consensus 724 ~~~~~~~~G~~s~~~lvG~~dll~~~~~~---~~~~~~ldl~~~l~~~~ 769 (771)
T d1ea0a2 724 VREILAGLGFRSLNEVIGRTDLLHQVSRG---AEHLDDLDLNPRLAQVD 769 (771)
T ss_dssp HHHHHHHHTCSCSGGGTTCGGGEEEC-----------CCCCHHHHCCSS
T ss_pred HHHHHHHHCCCCHHHHCCCHHHHHHCCCC---HHHHHCCCCHHHHCCCC
T ss_conf 99999997589988944635431015533---34441178067547799
|
| >d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase, N-terminal domain {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Class II glutamine amidotransferases domain: Alpha subunit of glutamate synthase, N-terminal domain species: Synechocystis sp. [TaxId: 1143]
Probab=100.00 E-value=0 Score=1100.36 Aligned_cols=425 Identities=44% Similarity=0.808 Sum_probs=409.7
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEECC
Q ss_conf 65899998479876074999999984154567778999999843241446958899999963988999995147767338
Q 000266 115 CGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILVALPHDFFKEAAKNVGFQLPPPGEYAVGMFFLP 194 (1760)
Q Consensus 115 CGVGfia~~~g~~sh~iv~~al~~L~~M~HRGa~g~d~~tGDGAGil~~iP~~ff~~~~~~~g~~lp~~g~yavG~~Flp 194 (1760)
|||||||+++|++||+||++||++|+||+||||||||++||||||||+||||+||++...++|++||+.++|||||+|||
T Consensus 1 CGvGfIa~~~g~~Sh~iV~~al~aL~~m~HRGa~gaD~~tGDGAGIL~qIP~~ff~~~~~~~gi~Lp~~~~yaVGm~FlP 80 (430)
T d1ofda3 1 CGVGFIANLRGKPDHTLVEQALKALGCMEHRGGCSADNDSGDGAGVMTAIPRELLAQWFNTRNLPMPDGDRLGVGMVFLP 80 (430)
T ss_dssp CEEEEEECSSSCCBSHHHHHHHHHHHHTGGGSCBCTTSSSBSCEEEEEECCHHHHHHHHHHTTCCCCCGGGCEEEEEEEC
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCEEEEEEECC
T ss_conf 94799997589761899999999970077868557889985601586559989999999975999998887699999889
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCC-CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998799999999999999759889997862789998897522589907999994999-8923478889999999999999
Q 000266 195 QSENRREESKKVFTKVAESLGHTVLGWRAVPTDNSGLGNSALQTEPVVEQVFLTPSL-RSKVDFENQMYILRRVSMAAIR 273 (1760)
Q Consensus 195 ~d~~~~~~~~~~ie~~~~~~gl~vl~wR~VP~~~~~lG~~a~~~~P~i~Q~fv~~~~-~~~~~fer~Ly~lRk~~e~~i~ 273 (1760)
+|+..+.++++++++++.++|++|++||+||||+++||+.|++++|.|+|+||.++. .+..+||++||++||.+ +
T Consensus 81 ~d~~~~~~~~~~ie~~~~~~gl~vlgwR~VPv~~~~lG~~A~~~~P~i~Qvfv~~~~~~~~~~~er~L~~~Rk~~----~ 156 (430)
T d1ofda3 81 QEPSAREVARAYVEEVVRLEKLTVLGWREVPVNSDVLGIQAKNNQPHIEQILVTCPEGCAGDELDRRLYIARSII----G 156 (430)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCEEEEEEECCBCGGGSCHHHHHHCCEEEEEEEECTTCCCHHHHHHHHHHHHHHH----G
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH----H
T ss_conf 886777555689999988548369987403557654456777162411367751786776677887777888887----7
Q ss_pred HHHHHCCCCCCCEEEEEECCCEEEEECCCCHHCHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 84310159998389999568808998211511010010014799886511899852145799999898987410200455
Q 000266 274 ESLNLEHGGAKDFYICSLSSRTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRILGHNGE 353 (1760)
Q Consensus 274 ~~~~~~~~~~~~~yI~Sls~~tiVyKG~g~~~qv~~~y~~DL~d~~~~s~~ai~H~RySTNt~psw~~AQPfr~laHNGE 353 (1760)
+.+. .+|||||||++|||||||+++.||..||+ ||+|++|+|++||+|+||||||||+|.+|||||++|||||
T Consensus 157 ~~~~------~~fYi~SlSsrTIVYKGml~~~ql~~fy~-DL~d~~~~s~~al~H~RFSTNT~PsW~lAQPfR~laHNGE 229 (430)
T d1ofda3 157 KKLA------EDFYVCSFSCRTIVYKGMVRSIILGEFYL-DLKNPGYTSNFAVYHRRFSTNTMPKWPLAQPMRLLGHNGE 229 (430)
T ss_dssp GGCB------TTBEEEEEESSEEEEEESSCHHHHHHHBH-HHHCTTCCBSEEEEEECCCSSSCCCGGGSSCCSSEEEEEC
T ss_pred HHHH------CCCEEEECCCCEEEEECCCCHHHHHHHHH-CCCCCCCEEEEEEEEEEEECCCCCCCHHCCCCCCCCCCCC
T ss_conf 7764------57068733437378740105899998741-0269660789999999872677885101185100147764
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 55806679999973021110124884788852169558999967999999999999199999999870853311478899
Q 000266 354 INTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMD 433 (1760)
Q Consensus 354 Int~~gN~n~m~are~~~~s~~~g~~~~~l~~~~pi~~~~~SDSe~ld~~le~l~~~g~sl~eAi~~~iPeaw~~~~~m~ 433 (1760)
|||++||+|||++||..|+|+.|+. +++++++|++.+++|||++|||+||+|++.|+++++|+|||+||||++++.|+
T Consensus 230 INTi~GN~nwm~are~~l~s~~~~~--~~~~~l~pi~~~~~SDSa~lDn~lElL~~~g~~l~~a~~mliPeaw~~~~~m~ 307 (430)
T d1ofda3 230 INTLLGNINWMAAREKELEVSGWTK--AELEALTPIVNQANSDSYNLDSALELLVRTGRSPLEAAMILVPEAYKNQPALK 307 (430)
T ss_dssp CTTHHHHHHHHHHHGGGCCCTTCCH--HHHHHHCCSCCTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHSCCCCTTCGGGT
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCCC--CCHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 0100024889998642013654331--10432267678886521327889999985167667787751104334665568
Q ss_pred --HHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEECCCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCCEEECCCCCCC
Q ss_conf --888999999771167799870899407956998069899977428998499999993365445899847771656899
Q 000266 434 --PQRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPG 511 (1760)
Q Consensus 434 --~e~rafyey~~~~mepwdGPa~iv~tdg~~iga~lDrnGLRPlr~~~t~d~~~i~ASE~gaidi~~~~v~~kg~l~PG 511 (1760)
|++|+||+||+++||||||||+|+|+||+++||++|||||||+||++|+|+.+++|||+|++|+++++|++||||+||
T Consensus 308 ~~p~~r~fyey~~~~mEpWDGPA~i~ftdG~~iga~lDRnGLRP~Ry~~t~d~~~i~aSE~Gv~~~~~~~v~~kgrl~PG 387 (430)
T d1ofda3 308 DYPEISDFHDYYSGLQEPWDGPALLVFSDGKIVGAGLDRNGLRPARYCITKDDYIVLGSEAGVVDLPEVDIVEKGRLAPG 387 (430)
T ss_dssp TCHHHHHHHHHHTTTCCCCCSSEEEEEECSSEEEEEECTTCCSCCEEEEETTCCEEEESSTTCSCCCGGGEEEEEECCTT
T ss_pred CHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEECCCCCCCCEEEEECCCEEEEEECCCCCCCCHHHEEECCCCCCC
T ss_conf 35999999999975100246977999966999999964788975158996498899970153534775662321687999
Q ss_pred CEEEEECCCCEEECHHHHHHHHHHCCCCHHHHHHCCCCCCC
Q ss_conf 29999849977804288999988129907787511532333
Q 000266 512 MMLLVDFEKRIVVDDEALKQQYSLARPYGEWLQRQKIELKN 552 (1760)
Q Consensus 512 emi~vd~~~g~i~~~~e~k~~~a~~~py~~wl~~~~~~l~~ 552 (1760)
||++||+++|+|++|+|||.++++++||++||++++++|.+
T Consensus 388 ~m~~vD~~~g~i~~~~eik~~~~~~~py~~wl~~~~~~l~~ 428 (430)
T d1ofda3 388 QMIAVDLAEQKILKNYQIKQQAAQKYPYGEWIKIQRQTVAS 428 (430)
T ss_dssp CEEEEETTTTEEECHHHHHHHHHTTSCHHHHHHHHEEEECC
T ss_pred CEEEEECCCCEECCHHHHHHHHHHCCCHHHHHHHHHCCCCC
T ss_conf 67999987993877799999988619999999983022356
|
| >d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase, N-terminal domain {Azospirillum brasilense [TaxId: 192]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Class II glutamine amidotransferases domain: Alpha subunit of glutamate synthase, N-terminal domain species: Azospirillum brasilense [TaxId: 192]
Probab=100.00 E-value=0 Score=1092.21 Aligned_cols=420 Identities=43% Similarity=0.786 Sum_probs=401.8
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEECC
Q ss_conf 65899998479876074999999984154567778999999843241446958899999963988999995147767338
Q 000266 115 CGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILVALPHDFFKEAAKNVGFQLPPPGEYAVGMFFLP 194 (1760)
Q Consensus 115 CGVGfia~~~g~~sh~iv~~al~~L~~M~HRGa~g~d~~tGDGAGil~~iP~~ff~~~~~~~g~~lp~~g~yavG~~Flp 194 (1760)
|||||||+++|++||+||++||++|+||+||||||||++||||||||+||||+||++.....|+.+| .++|+|||+|||
T Consensus 1 CGvGfIa~~~g~~SH~iv~~aL~aL~~m~HRGa~gaD~~tGDGAGIl~qIP~~ff~~~~~~~g~~~~-~~~yaVG~~FlP 79 (422)
T d1ea0a3 1 CGVGFIAAIDGKPRRSVVEKGIEALKAVWHRGAVDADGKTGDGAGIHVAVPQKFFKDHVKVIGHRAP-DNKLAVGQVFLP 79 (422)
T ss_dssp CEECEEEETTCCCBHHHHHHHHHHHTSCGGGSCCCTTSSCCSCBCEEEECCHHHHHHHHHHTTCCCC-SSCEEEEEEEEC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHCCCCCC-CCCEEEEEEECC
T ss_conf 9679999769986079999999997007787875788998770157203999999999997099788-788699999778
Q ss_pred CCH-HHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCC-CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 998-79999999999999975988999786278999889752258990799999499-9892347888999999999999
Q 000266 195 QSE-NRREESKKVFTKVAESLGHTVLGWRAVPTDNSGLGNSALQTEPVVEQVFLTPS-LRSKVDFENQMYILRRVSMAAI 272 (1760)
Q Consensus 195 ~d~-~~~~~~~~~ie~~~~~~gl~vl~wR~VP~~~~~lG~~a~~~~P~i~Q~fv~~~-~~~~~~fer~Ly~lRk~~e~~i 272 (1760)
+++ ..+..++.++++.+.++|++|++||+||||+++||+.|++++|.|+|+||.++ ..+..+|||+||++||++|+.+
T Consensus 80 ~~~~~~~~~~~~~ie~~~~~~gl~vlgwR~VPvd~~~LG~~A~~~~P~i~Q~fv~~~~~~~~~~fEr~Ly~~Rk~~e~~~ 159 (422)
T d1ea0a3 80 RISLDAQEACRCIVETEILAFGYYIYGWRQVPINVDIIGEKANATRPEIEQIIVGNNKGVSDEQFELDLYIIRRRIEKAV 159 (422)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTTCEEEEEEECCCCGGGSCHHHHHHCCEEEEEEEECTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHCCCHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 97588999999888778750795699886488465434502331484022566406889997899888899999999997
Q ss_pred HHHHHHCCCCCCCEEEEEECCCEEEEECCCCHHCHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 98431015999838999956880899821151101001001479988651189985214579999989898741020045
Q 000266 273 RESLNLEHGGAKDFYICSLSSRTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRILGHNG 352 (1760)
Q Consensus 273 ~~~~~~~~~~~~~~yI~Sls~~tiVyKG~g~~~qv~~~y~~DL~d~~~~s~~ai~H~RySTNt~psw~~AQPfr~laHNG 352 (1760)
... . ..+|||||||++|||||||+++.||.+||+ ||+|++|+|++||+|+||||||||+|.+|||||++||||
T Consensus 160 ~~~---~---~~~fYi~SlSsrTIVYKGml~~~ql~~fy~-DL~d~~~~s~~al~H~RFSTNT~PsW~lAQPFR~laHNG 232 (422)
T d1ea0a3 160 KGE---Q---INDFYICSLSARSIIYKGMFLAEQLTTFYP-DLLDERFESDFAIYHQRYSTNTFPTWPLAQPFRMLAHNG 232 (422)
T ss_dssp HHH---T---CCSCEEEEEESSEEECCBSSCGGGHHHHCG-GGGSTTCCBSEEEEEECCCSCSCCCSTTSSCCSSEEEEE
T ss_pred HHC---C---CCCCEECCCCCCEEEEECCCCHHHHHHHHH-CCCCCCCEEEEEEEEEEEECCCCCCHHHCCCEEEECCCC
T ss_conf 540---4---677231256515300010106888876411-026801389999988530015899610138423224787
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCC
Q ss_conf 55580667999997302111012488478885216955899996799999999999919999999987085331147889
Q 000266 353 EINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNM 432 (1760)
Q Consensus 353 EInt~~gN~n~m~are~~~~s~~~g~~~~~l~~~~pi~~~~~SDSe~ld~~le~l~~~g~sl~eAi~~~iPeaw~~~~~m 432 (1760)
||||++||+|||+|||..++|+.|| ++++++.||+.+++|||++|||+||+|+++|+++++|+|||+||||++++.|
T Consensus 233 EINTi~gN~nwm~are~~~~s~~~~---~~~~~l~pii~~~~SDSa~lDn~lElL~~~G~sl~~a~~mliP~aw~~~~~m 309 (422)
T d1ea0a3 233 EINTVKGNVNWMKAHETRMEHPAFG---THMQDLKPVIGVGLSDSGSLDTVFEVMVRAGRTAPMVKMMLVPQALTSSQTT 309 (422)
T ss_dssp CCTTHHHHHHHHHHHGGGCCCSTTG---GGHHHHCCSSCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHSCCCCC---CC
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCC---CCHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHCCCCC
T ss_conf 4655431677998765201365444---2024442225788753045899999999839967888886111555425665
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEECCCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCCEEECCCCCCCC
Q ss_conf 98889999997711677998708994079569980698999774289984999999933654458998477716568992
Q 000266 433 DPQRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGM 512 (1760)
Q Consensus 433 ~~e~rafyey~~~~mepwdGPa~iv~tdg~~iga~lDrnGLRPlr~~~t~d~~~i~ASE~gaidi~~~~v~~kg~l~PGe 512 (1760)
++++|+||+|++++||||||||+|+|+||+++||++|||||||+||+.|+|+.+++|||+|++|+++++|++||||+|||
T Consensus 310 ~~~~r~fyey~~~~~epwdGPA~i~ftdg~~~ga~lDRnGLRP~ry~~t~d~~~i~aSE~Gv~~~~~~~v~~kgrl~PG~ 389 (422)
T d1ea0a3 310 PDNHKALIQYCNSVMEPWDGPAALAMTDGRWVVGGMDRNGLRPMRYTITTDGLIIGGSETGMVKIDETQVIEKGRLGPGE 389 (422)
T ss_dssp CHHHHHHHHHHHHHCCCCCSSEEEEECSSSEEEEECCTTCCSCCEEEEETTSEEEECSSSTTSCCCGGGEEEEEECCTTC
T ss_pred CHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEECCCCCCCCEEEEECCCEEEEEECCCCCCCCHHHEEECCCCCCCC
T ss_conf 47889999998754346678769998649989999637889740699952998999821535458778823436879996
Q ss_pred EEEEECCCCEEECHHHHHHHHHHCCCCHHHHHH
Q ss_conf 999984997780428899998812990778751
Q 000266 513 MLLVDFEKRIVVDDEALKQQYSLARPYGEWLQR 545 (1760)
Q Consensus 513 mi~vd~~~g~i~~~~e~k~~~a~~~py~~wl~~ 545 (1760)
|++||+++|+|++|+|||.++++++||++||++
T Consensus 390 ~~~vd~~~g~i~~d~eik~~~~~~~py~~wl~~ 422 (422)
T d1ea0a3 390 MIAVDLQSGKLYRDRELKDHLATLKPWDKWVQN 422 (422)
T ss_dssp EEEEETTTTEEECHHHHHHHHHHTTTHHHHHTT
T ss_pred EEEEECCCCEECCHHHHHHHHHHCCCHHHHHCC
T ss_conf 699998899477769999998751998788459
|
| >d1ea0a1 b.80.4.1 (A:1203-1472) Alpha subunit of glutamate synthase, C-terminal domain {Azospirillum brasilense [TaxId: 192]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Alpha subunit of glutamate synthase, C-terminal domain family: Alpha subunit of glutamate synthase, C-terminal domain domain: Alpha subunit of glutamate synthase, C-terminal domain species: Azospirillum brasilense [TaxId: 192]
Probab=100.00 E-value=0 Score=637.12 Aligned_cols=261 Identities=44% Similarity=0.733 Sum_probs=255.3
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHCCCCCCEE
Q ss_conf 76367799999999999709968998310156761102356899876123899972299999467420221028899689
Q 000266 1372 LDMALDQKLIKLSKAALEKALPVYIETPVCNVNRAVGTMLSHEVTKRYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILL 1451 (1760)
Q Consensus 1372 ~~~~ld~~~~~~~~~~~~~~~~~~~~~~i~n~dR~vG~~ls~~i~~~~g~~gl~~~~i~i~~~G~aGq~~Gaf~~~G~~i 1451 (1760)
+...||++||++++++|++++++.++++|.|+||+|||+|||+|+++||+.|||+++|+|+++|+||||||||+++|++|
T Consensus 5 ~~~~LD~~li~~~~~~i~~~~~v~~~~~I~N~dRsvGt~Lsg~I~k~~G~~gl~~~ti~i~~~G~aGqsfgaf~~~g~~l 84 (270)
T d1ea0a1 5 VPDTLDARIVADARPLFEEGEKMQLAYNARNTQRAIGTRLSSMVTRKFGMFGLQPGHITIRLRGTAGQSLGAFAVQGIKL 84 (270)
T ss_dssp CCCCTHHHHHHHTHHHHHHCCCEEEEEEECTTCCSTTHHHHHHHHHHTTTTSSCTTSEEEEEEEEECSSTTTTCBTTEEE
T ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEEEECCCCCEE
T ss_conf 98638899999999999769957999856865856416799999998585889986357885167751023433676089
Q ss_pred EEEECCCCHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf 99914776120089996699939999999998652010365303754279993566542000158859999277762012
Q 000266 1452 ELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCVRNSGARAVVEGVGDHGCE 1531 (1760)
Q Consensus 1452 ~v~G~a~dyvGkgmsGG~IvV~g~~~~~f~~~~~~i~Gn~~~yGatgG~i~v~G~aG~r~gvr~sG~~~VV~G~Gd~~~e 1531 (1760)
+|+|+|||||||+||||+|+|+|++++.|.+++|+|+||+|+||||||++||+|+|||||||||||+++||||+|||+||
T Consensus 85 ~l~G~anDyvGkg~~gg~i~v~~~~~~~~~~~~~~i~Gn~~~yGAt~G~~~~~G~ageRf~VRnSGa~aVveG~Gdh~cE 164 (270)
T d1ea0a1 85 EVMGDANDYVGKGLSGGTIVVRPTTSSPLETNKNTIIGNTVLYGATAGKLFAAGQAGERFAVRNSGATVVVEGCGSNGCE 164 (270)
T ss_dssp EEEEEECSCTTTTCEEEEEEEECCTTCCCCGGGSEEECSSTTTTCCEEEEEESSEECTTTTTTCEEEEEEESCBCSSTTT
T ss_pred EEEECCCCHHCCCCCCCEEEEECCCCCCCCCCCCCEECCEEEEECCCCEEEECCCCCCEEEECCCCCEEEECCCCCEEEE
T ss_conf 99834752001355665389987855676543461103247861467528982775414532116757874364121122
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 35584799938878764589745299997577311002595623231189888999999999999998271999999861
Q 000266 1532 YMTGGTVVVLGKTGRNFAAGMSGGIAYVLDVDGKFRSRCNPELVDLDKVEEEEDIITLRMMIQQHQRYTNSQLAKEVLAD 1611 (1760)
Q Consensus 1532 yMtgG~ivVlG~~G~~~gagM~gG~iyv~~~~~~~~~~~n~~~V~l~~~~~~~d~~~l~~ll~~h~~~t~s~~a~~iL~~ 1611 (1760)
|||||+|||||++|+|||||||||++||||+++.|.++||.++|.+.++.+++|.++|+.||++|+++|+|.+|++||+|
T Consensus 165 YMTgG~vvvLG~~G~nfgAGMsGGiAYvyd~~~~f~~~~N~e~V~l~~~~~e~de~~Lk~LIe~Hv~~TgS~~A~~IL~n 244 (270)
T d1ea0a1 165 YMTGGTAVILGRVGDNFAAGMTGGMAYVYDLDDSLPLYINDESVIFQRIEVGHYESQLKHLIEEHVTETQSRFAAEILND 244 (270)
T ss_dssp TCCEEEECCSSCBCSSBTTTCCSSEECCCCTTSCHHHHBCGGGEEEECCCSTTHHHHHHHHHHHHHHHHCCHHHHHHHHT
T ss_pred EECCCEEEEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 44275489960367530034105379996223455553366630123368989999999999999998798999999997
Q ss_pred HHHCCCCEEEECCCCHHHHHH
Q ss_conf 321179949992301699999
Q 000266 1612 FENLLPKFIKVFPRDYKRVLA 1632 (1760)
Q Consensus 1612 ~~~~~~~F~kv~P~~y~~~l~ 1632 (1760)
|++++++||||+|+||+++|+
T Consensus 245 Wd~~~~~FvKV~Pkdy~~~Le 265 (270)
T d1ea0a1 245 WAREVTKFWQVVPKEMLNRLE 265 (270)
T ss_dssp HHHHHTTCCEEEEGGGGGGCS
T ss_pred HHHHHCCEEEEECHHHHHHCC
T ss_conf 999859899995789997514
|
| >d1ofda1 b.80.4.1 (A:1240-1507) Alpha subunit of glutamate synthase, C-terminal domain {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Alpha subunit of glutamate synthase, C-terminal domain family: Alpha subunit of glutamate synthase, C-terminal domain domain: Alpha subunit of glutamate synthase, C-terminal domain species: Synechocystis sp. [TaxId: 1143]
Probab=100.00 E-value=0 Score=613.66 Aligned_cols=263 Identities=42% Similarity=0.709 Sum_probs=254.9
Q ss_pred CCCCHHHHHHHHHH--HHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHCCCC
Q ss_conf 98763677999999--9999970996899831015676110235689987612389997229999946742022102889
Q 000266 1370 HGLDMALDQKLIKL--SKAALEKALPVYIETPVCNVNRAVGTMLSHEVTKRYHLVGLPADTIHIKLTGSAGQSVGAFLCP 1447 (1760)
Q Consensus 1370 ~~~~~~ld~~~~~~--~~~~~~~~~~~~~~~~i~n~dR~vG~~ls~~i~~~~g~~gl~~~~i~i~~~G~aGq~~Gaf~~~ 1447 (1760)
|.+...||++||.+ .+++|++++++.++++|.|+||++||+||++|+++||+.|+ +++|+|+++|+||||||||+++
T Consensus 2 h~~~~~LD~~ll~~~~~~~ai~~~~~~~~~~~I~N~~R~vG~~ls~~i~~~~g~~g~-~~~i~i~~~G~aGqsfgaf~~~ 80 (268)
T d1ofda1 2 HSNGPVLDDDILADPDIQEAINHQTTATKTYRLVNTDRTVGTRLSGAIAKKYGNNGF-EGNITLNFQGAAGQSFGAFNLD 80 (268)
T ss_dssp CCCCSCHHHHHHHSHHHHHHHHHCCEEEEEEEECTTCCSTTHHHHHHHHHHHTTTCC-CCEEEEEEEEEECTTTTTTCCT
T ss_pred CCCHHHHHHHHHHCHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCC-CCCEEEEEECCCHHHHHHHCCC
T ss_conf 887277789999688779998759964579865865633406899999998686899-9977999815724667563546
Q ss_pred CCEEEEEECCCCHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCC
Q ss_conf 96899991477612008999669993999999999865201036530375427999356654200015885999927776
Q 000266 1448 GILLELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCVRNSGARAVVEGVGD 1527 (1760)
Q Consensus 1448 G~~i~v~G~a~dyvGkgmsGG~IvV~g~~~~~f~~~~~~i~Gn~~~yGatgG~i~v~G~aG~r~gvr~sG~~~VV~G~Gd 1527 (1760)
|++|+|+|+|||||||+|+||+|+|+|+.++.|.+++|+|+||+|+||||||++||+|+||+||||||||+++||||+||
T Consensus 81 G~~l~l~G~anD~vgkg~~gG~i~i~~~~~~~~~~~~n~i~Gn~~~yGatgG~~~v~G~aGeRf~vrnsga~~VveG~gd 160 (268)
T d1ofda1 81 GMTLHLQGEANDYVGKGMNGGEIVIVPHPQASFAPEDNVIIGNTCLYGATGGNLYANGRAGERFAVRNSVGKAVIEGAGD 160 (268)
T ss_dssp TEEEEEEEEECSCTTTTCCSSEEEEECCTTCCSCGGGSBCSCSSTTTTCCSCEEEESSBCCSSTTTTCSSCEEEESCCCS
T ss_pred CCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCEECCEEEECCCCCEEEEECCCHHHHHHHHHCCEEEEECCCC
T ss_conf 63699997027662556554645897684456543457213221210135517997323105788875054677614576
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 20123558479993887876458974529999757731100259562323118988899999999999999827199999
Q 000266 1528 HGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYVLDVDGKFRSRCNPELVDLDKVEEEEDIITLRMMIQQHQRYTNSQLAKE 1607 (1760)
Q Consensus 1528 ~~~eyMtgG~ivVlG~~G~~~gagM~gG~iyv~~~~~~~~~~~n~~~V~l~~~~~~~d~~~l~~ll~~h~~~t~s~~a~~ 1607 (1760)
|+|||||||+|||||++|+|||+|||||++||||++++|..+||.++|+++++++++|.++|+.||++|+++|+|.+|++
T Consensus 161 h~~EYMtgG~vvvLG~~G~nfgaGMsGG~AYv~d~~~~f~~~~N~e~V~l~~l~~~ede~~Lk~LI~~H~~~TgS~~Ak~ 240 (268)
T d1ofda1 161 HCCEYMTGGVIVVLGPVGRNVGAGMTGGLAYFLDEVGDLPEKINPEIITLQRITASKGEEQLKSLITAHVEHTGSPKGKA 240 (268)
T ss_dssp STTTTCEEEEEEECSCCCSSBTTTCCEEEEEEECSSSCHHHHBCTTTCEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred EEEEEECCCEEEEEHHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 22355517478872102256778650846897032556787726442000105888899999999999999979999999
Q ss_pred HHHHHHHCCCCEEEECCCCHHHHHHH
Q ss_conf 98613211799499923016999999
Q 000266 1608 VLADFENLLPKFIKVFPRDYKRVLAS 1633 (1760)
Q Consensus 1608 iL~~~~~~~~~F~kv~P~~y~~~l~~ 1633 (1760)
||+||++++.+|+||+|++||++||.
T Consensus 241 IL~nWd~~~~~FvKVvPk~yk~alE~ 266 (268)
T d1ofda1 241 ILANWSDYLGKFWQAVPPSEKDSPEA 266 (268)
T ss_dssp HHHTHHHHHTTEEEEECTTSTTSTTT
T ss_pred HHHHHHHHHCCEEEEECHHHHHCHHC
T ss_conf 99768988487999907788636430
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=1.2e-35 Score=263.15 Aligned_cols=297 Identities=20% Similarity=0.162 Sum_probs=202.6
Q ss_pred CCCCCCCCCCC--CCCCCCCCCCCCCCCC-----CEEECCCCCCC--CCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCC
Q ss_conf 33433445678--9999888777333346-----44745798434--749999999999997099632169999923657
Q 000266 983 LRGLLKFKEAD--VKIPLEEVEPASEIVK-----RFCTGAMSYGS--ISLEAHTTLATAMNKIGGKSNTGEGGEQPSRME 1053 (1760)
Q Consensus 983 ~r~ll~~~~~~--~~i~~~~Ve~~t~i~~-----Pf~isaMS~Gs--ls~ea~~aLA~Aa~~~G~~s~sGeGg~~~e~~~ 1053 (1760)
|-++. |. |+ +.+++++||++|+|++ ||+++||++|+ ++++++.+||++|++.|+..++|+++..+.+..
T Consensus 5 fddi~-lv-P~~l~~~d~~~vdlst~i~G~~l~~Pi~is~Ms~g~~~~~~~~~~alA~aA~~~g~~~~~~~~~~~~~~~~ 82 (329)
T d1p0ka_ 5 LDDIT-FV-HVSLPDLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSALKDPS 82 (329)
T ss_dssp GGGEE-EC-CCSCCCCCGGGCBCCEEETTEEESCSEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCEECCCCTTTTTCHH
T ss_pred CCEEE-EE-CCCCCCCCHHHCCCCEEECCEECCCCEEECCHHHHHHHCCHHHHHHHHHHHHHCCCCEECCCCCCCCHHHH
T ss_conf 45589-88-88899998566788879899984896698887776554137999999999998299720365421206699
Q ss_pred CCCCCCCCHHHHH-------EEECCCCCCCCCHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 6789998413431-------232144886779564347126777663057889889878754218999880898863333
Q 000266 1054 PLSDGSMNPKRSA-------IKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLI 1126 (1760)
Q Consensus 1054 ~~~~g~~~~~~s~-------IkQvasgrFGvt~~~L~~a~~ieIKiaQGAKpG~GG~Lpg~kv~~~IA~~r~~~~G~~li 1126 (1760)
.. ..... ..+++............ -.+. +.|... + .+ +....+...
T Consensus 83 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~---~~g~~a-i---~~--------~~~~~~~~~ 135 (329)
T d1p0ka_ 83 ER------LSYEIVRKENPNGLIFANLGSEATAAQAK------EAVE---MIGANA-L---QI--------HLNVIQEIV 135 (329)
T ss_dssp HH------HHHHHHHHHCSSSCEEEEEETTCCHHHHH------HHHH---HTTCSE-E---EE--------EECTTTTC-
T ss_pred HH------HHHHHHHHHCCCCEEEEEECCCHHHHHHH------HHHH---HCCCCE-E---EE--------CCCCCCHHH
T ss_conf 98------66656764077633888504430489999------9999---769988-9---83--------144430100
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC--------C
Q ss_conf 89999999999989999999997399992689981136889999999984997999923999989985222--------1
Q 000266 1127 SPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTG--------I 1198 (1760)
Q Consensus 1127 sP~~h~diySiEdL~qlI~~Lr~~~p~~pI~VKlv~~~Gig~vA~~aakaGAD~IvIsG~~GGTGaa~~~s--------i 1198 (1760)
.+..+++. ..+.+.+.++++.+ +.|+++|.+........+..+.++|+|+|+||||+|++..++... .
T Consensus 136 ~~~~~~~~---~~~~~~i~~i~~~~-~~~vivk~v~~~~~~~~a~~~~~~GaD~i~v~~~gG~~~~~~~~~~~~~~~g~~ 211 (329)
T d1p0ka_ 136 MPEGDRSF---SGALKRIEQICSRV-SVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFF 211 (329)
T ss_dssp -------C---TTHHHHHHHHHHHC-SSCEEEEEESSCCCHHHHHHHHHHTCSEEEEEC---------------CCGGGG
T ss_pred HCCCCCCC---CCHHHHHHHHHHHC-CCCCEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHCCCCCCCH
T ss_conf 01466432---35699999999975-898578863776329999999964799999767898875455111203676640
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 24688889999999999884799984099986986799999999991998112351679983010011343598987322
Q 000266 1199 KNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIA 1278 (1760)
Q Consensus 1199 ~~~GlP~~~~L~ev~q~L~~~glr~rV~IiadGGIrtG~DV~KALaLGAdaVgiGta~L~algc~~~r~c~~~~cp~gia 1278 (1760)
..+++|....+.++... +++|+||+|||||+|.||+|||+||||+|++||++|+++++.
T Consensus 212 ~~~~~~~~~~l~~~~~~------~~~v~viadGGIr~g~Dv~KAlalGAdaV~iGr~~l~al~~~--------------- 270 (329)
T d1p0ka_ 212 NSWGISTAASLAEIRSE------FPASTMIASGGLQDALDVAKAIALGASCTGMAGHFLKALTDS--------------- 270 (329)
T ss_dssp TTCSCCHHHHHHHHHHH------CTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHHHH------CCCCEEEECCCCCCHHHHHHHHHCCCCCHHCCHHHHHHHCCC---------------
T ss_conf 67689999999999841------589169973884639999999982999320247888876147---------------
Q ss_pred CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEECCCCCCCCHH-HHCCCCCCCC
Q ss_conf 1393567420898999999999999999999995299883332089741321300013301-0138997234
Q 000266 1279 TQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVDKEVTKTNE-KLENIDLSLL 1349 (1760)
Q Consensus 1279 tqdp~lr~~~~g~~e~V~n~l~~l~~ELr~~Ma~lG~~si~elvgr~dll~~~~~~~~~~~-~~~~~dls~~ 1349 (1760)
++++|.++++.+.+||+..|+++|+++++|| .+.+++... ++ +.| +.+++|++..
T Consensus 271 ------------G~~gv~~~l~~l~~el~~~m~~~G~~~i~el-~~~~lv~~~-~~--~~~~~~~~~~~~~~ 326 (329)
T d1p0ka_ 271 ------------GEEGLLEEIQLILEELKLIMTVLGARTIADL-QKAPLVIKG-ET--HHWLTERGVNTSSY 326 (329)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHTCCBHHHH-TTCCEEECH-HH--HHHHHHTTCCSHHH
T ss_pred ------------CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH-CCCCEEECC-CH--HHHHHHCCCCHHHC
T ss_conf ------------7999999999999999999998689989994-868788563-27--89999718994751
|
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=4.7e-36 Score=266.03 Aligned_cols=312 Identities=17% Similarity=0.182 Sum_probs=215.9
Q ss_pred HHHHHHHHHCC-CHHHHHHHHHHHHHCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CEEECCCCCCCC
Q ss_conf 99999999139-9899999999976002----6754334334456789999888777333346-----447457984347
Q 000266 952 IAKLQEAARGN-SVAAYKEYSKRIQELN----KTCNLRGLLKFKEADVKIPLEEVEPASEIVK-----RFCTGAMSYGSI 1021 (1760)
Q Consensus 952 i~~lq~a~~~~-~~~~~~~y~~~~~~~~----~~~~~r~ll~~~~~~~~i~~~~Ve~~t~i~~-----Pf~isaMS~Gsl 1021 (1760)
|.-+++.++.+ +...|.||...++|+. |...+.++. |+ |+..+++++||++|+|++ ||+|+||++|+.
T Consensus 5 i~d~~~~A~~~lp~~~~~y~~~ga~de~t~~~N~~aFd~i~-l~-pr~L~d~~~idlst~~lG~~l~~P~~Iapmtgg~~ 82 (349)
T d1tb3a1 5 LADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIR-LR-PRYLRDMSKVDTRTTIQGQEISAPICISPTAFHSI 82 (349)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHCCCTTCHHHHHHHHHHHHCC-BC-CCCSSCCSSCBCCEEETTEEESSSEEECCCSCGGG
T ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHCC-EE-CCCCCCCCCCCCCEEECCCCCCCEEEECCHHCCCC
T ss_conf 99999999987888889998246665488999999997363-87-62366877788754489817244279752001455
Q ss_pred -CHHHHHHHHHHHHHCCCCEECCCCC-CCCCCCCC-CCCCCCCHHHHHEEECCCCC-CCCCHHHHCCCHHHHHHHHCCCC
Q ss_conf -4999999999999709963216999-99236576-78999841343123214488-67795643471267776630578
Q 000266 1022 -SLEAHTTLATAMNKIGGKSNTGEGG-EQPSRMEP-LSDGSMNPKRSAIKQVASGR-FGVSSYYLTNADELQIKMAQGAK 1097 (1760)
Q Consensus 1022 -s~ea~~aLA~Aa~~~G~~s~sGeGg-~~~e~~~~-~~~g~~~~~~s~IkQvasgr-FGvt~~~L~~a~~ieIKiaQGAK 1097 (1760)
.++++..+|++|++.|+.+..|+.+ .+.|++.. .+++ ..++|++... ...+...+..+. ..|.+
T Consensus 83 ~~~~~~~~lA~aA~~~g~~~~~~s~s~~~~e~v~~~~~~~------~~~~ql~~~~~~~~~~~~i~~~~------~~g~~ 150 (349)
T d1tb3a1 83 AWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEG------FRWFQLYMKSDWDFNKQMVQRAE------ALGFK 150 (349)
T ss_dssp TCTTTHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHSTTC------CEEEECCCCSCTTHHHHHHHHHH------HHTCC
T ss_pred CCCCHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHCCCC------CEEEEEECCCCHHHHHHHHHHHH------HCCCC
T ss_conf 5640466777766422451342254544302446653578------71664103368898999999998------63986
Q ss_pred CCC-CCCCC--CCCCHHHHHHHHCCCCC---------CC----CCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 898-89878--75421899988089886---------33----338999999-999998999999999739999268998
Q 000266 1098 PGE-GGELP--GHKVIGDIAVTRNSTAG---------VG----LISPPPHHD-IYSIEDLAQLIYDLKNANPGARISVKL 1160 (1760)
Q Consensus 1098 pG~-GG~Lp--g~kv~~~IA~~r~~~~G---------~~----lisP~~h~d-iySiEdL~qlI~~Lr~~~p~~pI~VKl 1160 (1760)
.-. --..| +... .+........+. .. ...|....+ -.+|++ +.|+|+.+ +.|+++|.
T Consensus 151 a~~~tvd~~~~~~~~-~d~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----i~~l~~~~-~~pii~Kg 224 (349)
T d1tb3a1 151 ALVITIDTPVLGNRR-RDKRNQLNLEANILLKDLRALKEEKPTQSVPVSFPKASFCWND----LSLLQSIT-RLPIILKG 224 (349)
T ss_dssp CEEEECSCSSCCCCH-HHHHTTCCCCC----CCSCCCCC-------------CCCCHHH----HHHHHTTC-CSCEEEEE
T ss_pred CCCCCCCCHHHCCHH-HHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHH----HHHHHHHC-CCCCCCCH
T ss_conf 322445745540102-5554135678542455666553201112232126677889899----99999854-78830001
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 11368899999999849979999239999899852221246888899999999998847999840999869867999999
Q 000266 1161 VSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVA 1240 (1760)
Q Consensus 1161 v~~~Gig~vA~~aakaGAD~IvIsG~~GGTGaa~~~si~~~GlP~~~~L~ev~q~L~~~glr~rV~IiadGGIrtG~DV~ 1240 (1760)
+.. ...+..+.++|+|+|.||+|+|+. .++++++...|+++.+.. .++++||+|||||+|.||+
T Consensus 225 i~~---~~da~~a~~~G~d~i~vsnhggr~--------~d~~~~~~~~l~~i~~~~-----~~~~~iiadGGIR~G~Dv~ 288 (349)
T d1tb3a1 225 ILT---KEDAELAMKHNVQGIVVSNHGGRQ--------LDEVSASIDALREVVAAV-----KGKIEVYMDGGVRTGTDVL 288 (349)
T ss_dssp ECS---HHHHHHHHHTTCSEEEECCGGGTS--------SCSBCCHHHHHHHHHHHH-----TTSSEEEEESSCCSHHHHH
T ss_pred HHH---HHHHHHHHHHHCCCEEEECCCCCC--------CCCCCCCHHHCCEEEECC-----CCCEEEEECCCCCCHHHHH
T ss_conf 000---688999998512100110211000--------024653122121022015-----7875688606767577899
Q ss_pred HHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 99991998112351679983010011343598987322139356742089899999999999999999999529988333
Q 000266 1241 IAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITE 1320 (1760)
Q Consensus 1241 KALaLGAdaVgiGta~L~algc~~~r~c~~~~cp~giatqdp~lr~~~~g~~e~V~n~l~~l~~ELr~~Ma~lG~~si~e 1320 (1760)
|||+|||++|++|+++|+++.+. ++++|.++++.+.+||+..|+++|+++++|
T Consensus 289 KALALGA~~V~igrp~L~~la~~---------------------------G~~gv~~~l~~l~~EL~~~M~l~G~~~i~e 341 (349)
T d1tb3a1 289 KALALGARCIFLGRPILWGLACK---------------------------GEDGVKEVLDILTAELHRCMTLSGCQSVAE 341 (349)
T ss_dssp HHHHTTCSCEEESHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHTCSBGGG
T ss_pred HHHHCCCCEEEECHHHHHHHHHC---------------------------CHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 99985899899876999999964---------------------------499999999999999999999968999788
Q ss_pred HCCCCCE
Q ss_conf 2089741
Q 000266 1321 MIGRSDM 1327 (1760)
Q Consensus 1321 lvgr~dl 1327 (1760)
| +++.+
T Consensus 342 L-~~~~i 347 (349)
T d1tb3a1 342 I-SPDLI 347 (349)
T ss_dssp C-CGGGB
T ss_pred C-CHHHE
T ss_conf 6-99645
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1e-34 Score=256.74 Aligned_cols=323 Identities=18% Similarity=0.183 Sum_probs=217.1
Q ss_pred HHHHHHHHHHCC-CHHHHHHHHHHHHHCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CEEECCCCCCC
Q ss_conf 999999999139-9899999999976002----6754334334456789999888777333346-----44745798434
Q 000266 951 AIAKLQEAARGN-SVAAYKEYSKRIQELN----KTCNLRGLLKFKEADVKIPLEEVEPASEIVK-----RFCTGAMSYGS 1020 (1760)
Q Consensus 951 ~i~~lq~a~~~~-~~~~~~~y~~~~~~~~----~~~~~r~ll~~~~~~~~i~~~~Ve~~t~i~~-----Pf~isaMS~Gs 1020 (1760)
.+.-+...++.+ ++..|.||...++++. |...|..+. |+ |+..+++++||++|+|++ ||+|+||+++.
T Consensus 27 ~~~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~aFd~i~-l~-Pr~L~dvs~iDlst~~lG~~l~~P~~Isp~g~~~ 104 (414)
T d1kbia1 27 NLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIF-FK-PKILVDVRKVDISTDMLGSHVDVPFYVSATALCK 104 (414)
T ss_dssp SHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGCE-EC-CCCSCCCSSCBCCEEETTEEESSSEEECCCSCGG
T ss_pred CHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHCE-EE-CCCCCCCCCCCCCEEECCCCCCCCEEECHHHHHC
T ss_conf 999999999986888888887146665099999999997360-66-5335787678885348984178887887456404
Q ss_pred CC----HHHHHHHHHHHHHCCCCEECCCCC-CCCCCCCCCCCCCCCHHHHHEEECCCCC-CCCCHHHHCCCHHHHHHHHC
Q ss_conf 74----999999999999709963216999-9923657678999841343123214488-67795643471267776630
Q 000266 1021 IS----LEAHTTLATAMNKIGGKSNTGEGG-EQPSRMEPLSDGSMNPKRSAIKQVASGR-FGVSSYYLTNADELQIKMAQ 1094 (1760)
Q Consensus 1021 ls----~ea~~aLA~Aa~~~G~~s~sGeGg-~~~e~~~~~~~g~~~~~~s~IkQvasgr-FGvt~~~L~~a~~ieIKiaQ 1094 (1760)
+. .+.+.++|+++...|+.+..+..+ .+.++......+ + ....+.|++... .......+..++....+..+
T Consensus 105 ~~~~~~~~~~~A~a~aa~~~~~~~~ls~~~~~~~~~~~~~a~~--~-~~~~~~q~y~~~~~~~~~~l~~ra~~ag~~al~ 181 (414)
T d1kbia1 105 LGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAAPS--D-KQIQWYQLYVNSDRKITDDLVKNVEKLGVKALF 181 (414)
T ss_dssp GTCTTTTHHHHHHHHHSSSSCCCEEECTTCSSCHHHHHHTCCC--S-SCCEEEEECCCSSHHHHHHHHHHHHHHTCSCEE
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCC--C-CCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 5682236788776477764136532232234656889987217--7-541011021124588899999999871885101
Q ss_pred -CC-CCCCCCCCCCCCCHHHHHHHHCCCC--------------CC-CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEE
Q ss_conf -57-8898898787542189998808988--------------63-3338999999999998999999999739999268
Q 000266 1095 -GA-KPGEGGELPGHKVIGDIAVTRNSTA--------------GV-GLISPPPHHDIYSIEDLAQLIYDLKNANPGARIS 1157 (1760)
Q Consensus 1095 -GA-KpG~GG~Lpg~kv~~~IA~~r~~~~--------------G~-~lisP~~h~diySiEdL~qlI~~Lr~~~p~~pI~ 1157 (1760)
.+ .| ..+..-............ +. ..++..... -.+|++ |.|++..+ +.|++
T Consensus 182 ~tvD~~-----~~g~re~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~l~~~~----i~~i~~~~-~~~~i 250 (414)
T d1kbia1 182 VTVDAP-----SLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKFIDP-SLTWKD----IEELKKKT-KLPIV 250 (414)
T ss_dssp EECSCS-----SCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCBTTBCT-TCCHHH----HHHHHHHC-SSCEE
T ss_pred CCCCCC-----CCCCCHHHHHHCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCC-CCCHHH----HHHHHCCC-CCEEE
T ss_conf 233443-----24651787872556654331444203554553277899985066-899999----99986157-75277
Q ss_pred EEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHH
Q ss_conf 99811368899999999849979999239999899852221246888899999999998847999840999869867999
Q 000266 1158 VKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGR 1237 (1760)
Q Consensus 1158 VKlv~~~Gig~vA~~aakaGAD~IvIsG~~GGTGaa~~~si~~~GlP~~~~L~ev~q~L~~~glr~rV~IiadGGIrtG~ 1237 (1760)
+|.+. ....|..+.++|+|+|++|+|+|+. .+.+.++..+|+++...+....+.++++||+|||||+|.
T Consensus 251 ~kgi~---~~~da~~~~~~G~~~i~vsnhggr~--------~d~~~~~~~~l~~i~~~~~~~~v~~~~~viadGGIR~G~ 319 (414)
T d1kbia1 251 IKGVQ---RTEDVIKAAEIGVSGVVLSNHGGRQ--------LDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGT 319 (414)
T ss_dssp EEEEC---SHHHHHHHHHTTCSEEEECCTTTTS--------STTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHH
T ss_pred EECCC---HHHHHHHHHHCCCCCEEECCCCCCC--------CCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHH
T ss_conf 52000---0677778874388624522321111--------111220000002466666411148851388538867678
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999991998112351679983010011343598987322139356742089899999999999999999999529988
Q 000266 1238 DVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRT 1317 (1760)
Q Consensus 1238 DV~KALaLGAdaVgiGta~L~algc~~~r~c~~~~cp~giatqdp~lr~~~~g~~e~V~n~l~~l~~ELr~~Ma~lG~~s 1317 (1760)
||+|||+|||++|++|+++|+++++. +.++|+++++.+.+||+..|+++|+++
T Consensus 320 DVaKALALGAdaVgigrp~L~~la~~---------------------------G~egv~~~l~~l~~EL~~~M~l~G~~s 372 (414)
T d1kbia1 320 DVLKALCLGAKGVGLGRPFLYANSCY---------------------------GRNGVEKAIEILRDEIEMSMRLLGVTS 372 (414)
T ss_dssp HHHHHHHHTCSEEEECHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHTCCB
T ss_pred HHHHHHHCCCCEEEECHHHHHHHHHC---------------------------CHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999975899887768999999844---------------------------699999999999999999999858999
Q ss_pred HHHHCCCCCEE
Q ss_conf 33320897413
Q 000266 1318 ITEMIGRSDML 1328 (1760)
Q Consensus 1318 i~elvgr~dll 1328 (1760)
|+|| .|+.+.
T Consensus 373 i~eL-~~~~l~ 382 (414)
T d1kbia1 373 IAEL-KPDLLD 382 (414)
T ss_dssp GGGC-CGGGEE
T ss_pred HHHC-CHHHCC
T ss_conf 7891-998834
|
| >d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Glycolate oxidase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=100.00 E-value=4.6e-34 Score=252.08 Aligned_cols=305 Identities=18% Similarity=0.179 Sum_probs=212.4
Q ss_pred HHHHHHHCC-CHHHHHHHHHHHHHCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CEEECCCCCCCC-C
Q ss_conf 999999139-9899999999976002----6754334334456789999888777333346-----447457984347-4
Q 000266 954 KLQEAARGN-SVAAYKEYSKRIQELN----KTCNLRGLLKFKEADVKIPLEEVEPASEIVK-----RFCTGAMSYGSI-S 1022 (1760)
Q Consensus 954 ~lq~a~~~~-~~~~~~~y~~~~~~~~----~~~~~r~ll~~~~~~~~i~~~~Ve~~t~i~~-----Pf~isaMS~Gsl-s 1022 (1760)
-+...++.+ +...|.||...++++. |...+.++. |+ ++..+++++||++|+|++ ||+|+||++|.. .
T Consensus 8 d~~~~A~~~lp~~~~~y~~gga~~~~t~~~N~~~Fd~i~-l~-pr~L~d~~~iDlst~~lG~~~~~P~~IspMtgg~~~~ 85 (359)
T d1goxa_ 8 EYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRIL-FR-PRILIDVTNIDMTTTILGFKISMPIMIAPTAMQKMAH 85 (359)
T ss_dssp HHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGEE-EC-CCCSCCCSCCBCCEEETTEEESSSEEECCCSCGGGTC
T ss_pred HHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHCC-EE-CCCCCCCCCCCCCEEECCCCCCCCEEECCCCCCCCCC
T ss_conf 999999986888888987056774199999999998462-63-3124688779875567883557861526532346677
Q ss_pred HHHHHHHHHHHHHCCCCEECCCCC-CCCCCCCCCCCCCCCHHHHHEEECCCCC-CCCCHHHHCCCHHHH-----------
Q ss_conf 999999999999709963216999-9923657678999841343123214488-677956434712677-----------
Q 000266 1023 LEAHTTLATAMNKIGGKSNTGEGG-EQPSRMEPLSDGSMNPKRSAIKQVASGR-FGVSSYYLTNADELQ----------- 1089 (1760)
Q Consensus 1023 ~ea~~aLA~Aa~~~G~~s~sGeGg-~~~e~~~~~~~g~~~~~~s~IkQvasgr-FGvt~~~L~~a~~ie----------- 1089 (1760)
++++..+|+||.+.|+.+..+..+ .+.++......+ ..++|++..+ ...+...+.++..-.
T Consensus 86 ~~~e~~lA~aA~~~gi~~~~~s~s~~s~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~vd~~ 159 (359)
T d1goxa_ 86 PEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPG------IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP 159 (359)
T ss_dssp TTHHHHHHHHHHHTTCCEEECTTCSSCHHHHHTTCCC------CEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCS
T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCC------CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 8647876566886297223345545650236774699------8411222210677899999988875403344222410
Q ss_pred --------HHHHCCCCCCCC----CCCCCCCC--------HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf --------766305788988----98787542--------1899988089886333389999999999989999999997
Q 000266 1090 --------IKMAQGAKPGEG----GELPGHKV--------IGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKN 1149 (1760)
Q Consensus 1090 --------IKiaQGAKpG~G----G~Lpg~kv--------~~~IA~~r~~~~G~~lisP~~h~diySiEdL~qlI~~Lr~ 1149 (1760)
++-+....+... -..+.... .+.++. ...+ . .+|++ |.+++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~----~-~~~~~----v~~l~~ 221 (359)
T d1goxa_ 160 RLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAG---------QIDR----S-LSWKD----VAWLQT 221 (359)
T ss_dssp SCCCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHHHHHH---------TBCT----T-CCHHH----HHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHH---------HCCC----C-CCHHH----HHHHHH
T ss_conf 2223444124423578533145665530366765564117999985---------1378----8-99999----999986
Q ss_pred HCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 39999268998113688999999998499799992399998998522212468888999999999988479998409998
Q 000266 1150 ANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQT 1229 (1760)
Q Consensus 1150 ~~p~~pI~VKlv~~~Gig~vA~~aakaGAD~IvIsG~~GGTGaa~~~si~~~GlP~~~~L~ev~q~L~~~glr~rV~Iia 1229 (1760)
.+ +.|+++|++.. ...+..+.++|+|.|.+|+|+|.. .++++++...|+++.+. +.++++||+
T Consensus 222 ~~-~~~~~~kg~~~---~~da~~a~~~g~~~~~vsnhggr~--------ld~~~~~~~~l~~i~~~-----~~~~~~iia 284 (359)
T d1goxa_ 222 IT-SLPILVKGVIT---AEDARLAVQHGAAGIIVSNHGARQ--------LDYVPATIMALEEVVKA-----AQGRIPVFL 284 (359)
T ss_dssp HC-CSCEEEECCCS---HHHHHHHHHTTCSEEEECCGGGTS--------STTCCCHHHHHHHHHHH-----TTTSSCEEE
T ss_pred HC-CCCEEEECCCC---HHHHHHHHHCCCCCEECCCCCCCC--------CCCCCCHHHHCHHHHHC-----CCCCCCEEE
T ss_conf 15-66532200244---688899987066532203211100--------00000025445566503-----478621465
Q ss_pred CCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 69867999999999919981123516799830100113435989873221393567420898999999999999999999
Q 000266 1230 DGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREI 1309 (1760)
Q Consensus 1230 dGGIrtG~DV~KALaLGAdaVgiGta~L~algc~~~r~c~~~~cp~giatqdp~lr~~~~g~~e~V~n~l~~l~~ELr~~ 1309 (1760)
|||||+|.||+|||+|||++|++|+++|++++.. +.++|+++++.+.+||+..
T Consensus 285 dGGIR~G~Di~KALaLGAd~vgigrp~L~~la~~---------------------------g~~gv~~~i~~l~~EL~~~ 337 (359)
T d1goxa_ 285 DGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAE---------------------------GEAGVKKVLQMMRDEFELT 337 (359)
T ss_dssp ESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHC---------------------------CHHHHHHHHHHHHHHHHHH
T ss_conf 0575757789999984899898768999999843---------------------------4999999999999999999
Q ss_pred HHHCCCCCHHHHCCCCCEEE
Q ss_conf 99529988333208974132
Q 000266 1310 MSQLGFRTITEMIGRSDMLE 1329 (1760)
Q Consensus 1310 Ma~lG~~si~elvgr~dll~ 1329 (1760)
|+++|+++|+|| .++.+..
T Consensus 338 M~l~G~~~i~~L-~~~~l~~ 356 (359)
T d1goxa_ 338 MALSGCRSLKEI-SRSHIAA 356 (359)
T ss_dssp HHHHTCSBTTTC-CGGGEEE
T ss_pred HHHHCCCCHHHC-CHHHCCC
T ss_conf 998589997895-9954657
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.7e-35 Score=262.06 Aligned_cols=291 Identities=21% Similarity=0.191 Sum_probs=189.4
Q ss_pred CCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCC-----CEEECCCCCCCC-CHHHHHHHHHHHHHCCCCEECCCCCCCCC
Q ss_conf 67543343344567899--99888777333346-----447457984347-49999999999997099632169999923
Q 000266 979 KTCNLRGLLKFKEADVK--IPLEEVEPASEIVK-----RFCTGAMSYGSI-SLEAHTTLATAMNKIGGKSNTGEGGEQPS 1050 (1760)
Q Consensus 979 ~~~~~r~ll~~~~~~~~--i~~~~Ve~~t~i~~-----Pf~isaMS~Gsl-s~ea~~aLA~Aa~~~G~~s~sGeGg~~~e 1050 (1760)
|...|+++- |+ |+.. +++++||++|+|++ ||+++||++|+. ++.++.+||++|++.|+..++|+++..++
T Consensus 2 n~~~f~~~~-~~-p~~L~~~d~~~vDlst~~~G~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~~~~~~~~~~~ 79 (310)
T d1vcfa1 2 TTTGLEGFR-LR-YQALAGLALSEVDLTTPFLGKTLKAPFLIGAMTGGEENGERINLALAEAAEALGVGMMLGSGRILLE 79 (310)
T ss_dssp CCCSGGGEE-EC-CCTTCCCCGGGCCCCEEETTEEESSSEEECCCC---CCHHHHHHHHHHHHHHHTCEEEEEECHHHHH
T ss_pred CCCCCCCEE-EE-CCCCCCCCCCCCCCCEEECCEECCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHCCH
T ss_conf 754404107-87-2568999911270774789998689879868001011255899999999998399767434301303
Q ss_pred CCCCCCCCCCCHHHHHEEECCCCCCCCCHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 65767899984134312321448867795643471267776630578898898787542189998808988633338999
Q 000266 1051 RMEPLSDGSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPP 1130 (1760)
Q Consensus 1051 ~~~~~~~g~~~~~~s~IkQvasgrFGvt~~~L~~a~~ieIKiaQGAKpG~GG~Lpg~kv~~~IA~~r~~~~G~~lisP~~ 1130 (1760)
+.. . .....+++.+.... ...+++..|..+.+........+.....+...+..+...... ..
T Consensus 80 ~~~----~---~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 141 (310)
T d1vcfa1 80 RPE----A---LRSFRVRKVAPKAL----------LIANLGLAQLRRYGRDDLLRLVEMLEADALAFHVNPLQEAVQ-RG 141 (310)
T ss_dssp CTT----T---HHHHCCTTTCSSSC----------EEEEEEGGGGGTCCHHHHHHHHHHHTCSEEEEECCHHHHHHT-TS
T ss_pred HHH----H---HCCCCHHHHCCCCC----------EEEEECCCCHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHC-CC
T ss_conf 354----5---21305597567743----------563101343035547888877775188752044454344302-56
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCC----------CCCCCCCCCC
Q ss_conf 999999998999999999739999268998113688999999998499799992399998----------9985222124
Q 000266 1131 HHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGT----------GASRWTGIKN 1200 (1760)
Q Consensus 1131 h~diySiEdL~qlI~~Lr~~~p~~pI~VKlv~~~Gig~vA~~aakaGAD~IvIsG~~GGT----------Gaa~~~si~~ 1200 (1760)
++.+..+.++ +. .... ++.|+++|.+...-...++..+.++|+|+|+||||+|++ +....+...+
T Consensus 142 ~~~~~~~~~~---~~-~~~~-~~~p~~~k~v~~~~~~e~a~~~~~aGvd~i~vsn~gg~~~~~~~~~~~~~~~~~~~~~~ 216 (310)
T d1vcfa1 142 DTDFRGLVER---LA-ELLP-LPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCE 216 (310)
T ss_dssp CCCCTTHHHH---HH-HHCS-CSSCEEEECSSSCCCHHHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTT
T ss_pred CCCCCCHHHH---HH-HHHH-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHCCCCCCCCCHHHHHHHH
T ss_conf 5111667999---99-9764-16881244534765299999999859988982465555420040000257301122321
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 68888999999999988479998409998698679999999999199811235167998301001134359898732213
Q 000266 1201 AGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQ 1280 (1760)
Q Consensus 1201 ~GlP~~~~L~ev~q~L~~~glr~rV~IiadGGIrtG~DV~KALaLGAdaVgiGta~L~algc~~~r~c~~~~cp~giatq 1280 (1760)
.|+|+...|.++++. +++++||+||||++|.||+|||+|||++|++||++|+++.+
T Consensus 217 ~g~~~~~al~~~~~~------~~~i~Ii~dGGIr~g~Dv~KALalGAdaV~iGr~~l~~~~~------------------ 272 (310)
T d1vcfa1 217 IGIPTARAILEVREV------LPHLPLVASGGVYTGTDGAKALALGADLLAVARPLLRPALE------------------ 272 (310)
T ss_dssp CSCBHHHHHHHHHHH------CSSSCEEEESSCCSHHHHHHHHHHTCSEEEECGGGHHHHTT------------------
T ss_pred CCHHHHHHHHHHHHH------CCCCEEEECCCCCCHHHHHHHHHHCCCEEEEHHHHHHHHCC------------------
T ss_conf 136899999999863------58981775899785699999999399974474899998621------------------
Q ss_pred CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEE
Q ss_conf 935674208989999999999999999999952998833320897413
Q 000266 1281 DPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDML 1328 (1760)
Q Consensus 1281 dp~lr~~~~g~~e~V~n~l~~l~~ELr~~Ma~lG~~si~elvgr~dll 1328 (1760)
++++|.+++..+.+||+..|+++|+++|+||++|.+++
T Consensus 273 ----------G~~gv~~~l~~l~~El~~~m~~~G~~~i~el~g~~~~~ 310 (310)
T d1vcfa1 273 ----------GAERVAAWIGDYLEELRTALFAIGARNPKEARGRVERV 310 (310)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHTCSSGGGGTTCEEEC
T ss_pred ----------CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
T ss_conf ----------79999999999999999999986889999995163129
|
| >d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Membrane-associated (S)-mandelate dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=6.7e-33 Score=243.90 Aligned_cols=311 Identities=16% Similarity=0.133 Sum_probs=209.4
Q ss_pred HHHHHHHHHCC-CHHHHHHHHHHHHHCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CEEECCCCCCCC
Q ss_conf 99999999139-9899999999976002----6754334334456789999888777333346-----447457984347
Q 000266 952 IAKLQEAARGN-SVAAYKEYSKRIQELN----KTCNLRGLLKFKEADVKIPLEEVEPASEIVK-----RFCTGAMSYGSI 1021 (1760)
Q Consensus 952 i~~lq~a~~~~-~~~~~~~y~~~~~~~~----~~~~~r~ll~~~~~~~~i~~~~Ve~~t~i~~-----Pf~isaMS~Gsl 1021 (1760)
+.-+++.++.+ +...|.||...++|+. |...+.++- |+ ++..+++++||++|+|++ ||+|+||++|..
T Consensus 5 ~~d~~~~a~~~~p~~~~~y~~~ga~~~~t~~~N~~aFd~i~-l~-pr~L~d~~~idlst~~lGk~ls~Pi~Iapmtgg~~ 82 (353)
T d1p4ca_ 5 VEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWR-FK-PKRLVDVSRRSLQAEVLGKRQSMPLLIGPTGLNGA 82 (353)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGEE-EC-CCCSCCCSSCBCCEEETTEEESSSEEECCCSCGGG
T ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHCC-EE-CCCCCCCCCCCCCEEECCCCCCCCEEECCCCCCCC
T ss_conf 89999999986888888997146664299999999997372-77-21244877788755789817367545424344553
Q ss_pred -CHHHHHHHHHHHHHCCCCEECCCCCC-CCCCCCCCCCCCCCHHHHHEEECCCCCCCCCHHHHCCCHHHHHHHHCCCCCC
Q ss_conf -49999999999997099632169999-9236576789998413431232144886779564347126777663057889
Q 000266 1022 -SLEAHTTLATAMNKIGGKSNTGEGGE-QPSRMEPLSDGSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPG 1099 (1760)
Q Consensus 1022 -s~ea~~aLA~Aa~~~G~~s~sGeGg~-~~e~~~~~~~g~~~~~~s~IkQvasgrFGvt~~~L~~a~~ieIKiaQGAKpG 1099 (1760)
.++++..+|++|.+.|+.+.+|+.+. ..++.....++ ..+.+..... ..... ..++.....|++.-
T Consensus 83 ~~~~~n~~lA~aA~~~~i~~~~gs~s~~~~~e~~~~~~~------~~~~~~~~~~----~~~~~--~l~~~~~~~g~~~l 150 (353)
T d1p4ca_ 83 LWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCDG------DLWFQLYVIH----REIAQ--GMVLKALHTGYTTL 150 (353)
T ss_dssp TSTTHHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHCCS------CEEEEECCSS----HHHHH--HHHHHHHHTTCCEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCC------CEEEEECCCC----HHHHH--HHHHHHHHCCCCCE
T ss_conf 231025789988887411223456321220567885699------6255203432----89999--86999998098630
Q ss_pred C-CCCCCCCCCHHHHHHHHCC-----------------------CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 8-8987875421899988089-----------------------886333389999999999989999999997399992
Q 000266 1100 E-GGELPGHKVIGDIAVTRNS-----------------------TAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGAR 1155 (1760)
Q Consensus 1100 ~-GG~Lpg~kv~~~IA~~r~~-----------------------~~G~~lisP~~h~diySiEdL~qlI~~Lr~~~p~~p 1155 (1760)
. ....|.....+........ ......++....+. .++++ +.+++..+ +.|
T Consensus 151 ~~~vd~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----i~~l~~~~-~~~ 224 (353)
T d1p4ca_ 151 VLTTDVAVNGYRERDLHNRFKIPPFLTLKNFEGIDLGKMDKANLEMQAALMSRQMDAS-FNWEA----LRWLRDLW-PHK 224 (353)
T ss_dssp EEECSCSSCCCCHHHHHHTCCCCTTCCCGGGTTCCCSCCSSTTTTTHHHHTSSCCCTT-CCHHH----HHHHHHHC-CSE
T ss_pred EEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCC-CCHHH----HHHHHHCC-CCC
T ss_conf 4521652467536665410015312331002332235554333102578887335777-78999----99998624-652
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf 68998113688999999998499799992399998998522212468888999999999988479998409998698679
Q 000266 1156 ISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKT 1235 (1760)
Q Consensus 1156 I~VKlv~~~Gig~vA~~aakaGAD~IvIsG~~GGTGaa~~~si~~~GlP~~~~L~ev~q~L~~~glr~rV~IiadGGIrt 1235 (1760)
|++|.+... ..+..+.+.|+|.+.+++|+|.. .++++++...++++.... .++||+|||||+
T Consensus 225 i~~kgv~~~---~~~~~a~~~g~~~~~~s~~gg~~--------~~~~~~~~~~l~~i~~~~-------~~~viasGGIR~ 286 (353)
T d1p4ca_ 225 LLVKGLLSA---EDADRCIAEGADGVILSNHGGRQ--------LDCAISPMEVLAQSVAKT-------GKPVLIDSGFRR 286 (353)
T ss_dssp EEEEEECCH---HHHHHHHHTTCSEEEECCGGGTS--------CTTCCCGGGTHHHHHHHH-------CSCEEECSSCCS
T ss_pred HHHHCCHHH---HHHHHHHHCCCCHHHHCCCCCCC--------CCCCCCCHHCCCCHHCCC-------CCCEEECCCCCC
T ss_conf 223200345---66777776388613201333223--------356554001053021134-------543364477676
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999919981123516799830100113435989873221393567420898999999999999999999995299
Q 000266 1236 GRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGF 1315 (1760)
Q Consensus 1236 G~DV~KALaLGAdaVgiGta~L~algc~~~r~c~~~~cp~giatqdp~lr~~~~g~~e~V~n~l~~l~~ELr~~Ma~lG~ 1315 (1760)
|.||+|||+||||+|++|+++|+++.+. +.++|+++++.+..||+..|+++|+
T Consensus 287 G~Dv~KALaLGAd~vgigrp~L~~l~~~---------------------------G~egv~~~l~~l~~El~~~M~l~G~ 339 (353)
T d1p4ca_ 287 GSDIVKALALGAEAVLLGRATLYGLAAR---------------------------GETGVDEVLTLLKADIDRTLAQIGC 339 (353)
T ss_dssp HHHHHHHHHTTCSCEEESHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCCEEEECHHHHHHHHHC---------------------------CHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 6789999985899898768999999855---------------------------4999999999999999999998589
Q ss_pred CCHHHHCCCCCEE
Q ss_conf 8833320897413
Q 000266 1316 RTITEMIGRSDML 1328 (1760)
Q Consensus 1316 ~si~elvgr~dll 1328 (1760)
++|+|| +|+.|-
T Consensus 340 ~~i~eL-~~~~l~ 351 (353)
T d1p4ca_ 340 PDITSL-SPDYLQ 351 (353)
T ss_dssp CBGGGC-CGGGEE
T ss_pred CCHHHC-CHHHCC
T ss_conf 997886-998636
|
| >d1ecfa2 d.153.1.1 (A:1-249) Glutamine PRPP amidotransferase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Class II glutamine amidotransferases domain: Glutamine PRPP amidotransferase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=1.3e-27 Score=206.87 Aligned_cols=194 Identities=20% Similarity=0.202 Sum_probs=146.4
Q ss_pred CCEEEEEECCCE-E-EEECCCCHHCHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCE-------EEECCCCC
Q ss_conf 838999956880-8-99821151101001001479988651189985214579999989898741-------02004555
Q 000266 284 KDFYICSLSSRT-V-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMR-------ILGHNGEI 354 (1760)
Q Consensus 284 ~~~yI~Sls~~t-i-VyKG~g~~~qv~~~y~~DL~d~~~~s~~ai~H~RySTNt~psw~~AQPfr-------~laHNGEI 354 (1760)
+.++|++++... + +.|..+.+.++++... + +.+.++++|||+||+|.+.+++.+||||. .++|||+|
T Consensus 29 DsaGIa~~~~~~~~~~~k~~~~~~~~~~~~~--~--~~~~g~~gIGHtR~aT~G~~~~~nahP~~~~~~~~~~lvhNG~I 104 (249)
T d1ecfa2 29 DAAGIITIDANNCFRLRKANGLVSDVFEARH--M--QRLQGNMGIGHVRYPTAGSSSASEAQPFYVNSPYGITLAHNGNL 104 (249)
T ss_dssp SEEEEEEECTTSCEEEEEEESCHHHHCCHHH--H--HHCCSSEEEEEEECCBTTBCTTSCCSCEEECSSSCEEEEEEEEE
T ss_pred CEEEEEEEECCCEEEEEECCCCCCHHHHHHH--H--CCCCCCEEEEEEECCCCCCCCHHCCCCCCCCCCCCEEEEEEEEE
T ss_conf 7138999979977999974784430566664--2--15888512568620447997310031013579986999962023
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 58066799999730211101248847888521695589999679999999999991999999998708533114788998
Q 000266 355 NTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDP 434 (1760)
Q Consensus 355 nt~~gN~n~m~are~~~~s~~~g~~~~~l~~~~pi~~~~~SDSe~ld~~le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~ 434 (1760)
.|+..+++.+ +++.+. .|.+.||||++.++++.......+ ...
T Consensus 105 ~Ny~eL~~~~------------------l~~~g~-~f~s~tDtEvi~~li~~~~~~~~~------------------~~~ 147 (249)
T d1ecfa2 105 TNAHELRKKL------------------FEEKRR-HINTTSDSEILLNIFASELDNFRH------------------YPL 147 (249)
T ss_dssp TTHHHHHHHH------------------HHHHCC-CCCSSCHHHHHHHHHHHHHTTCCS------------------SSC
T ss_pred CCHHHHHHHH------------------HHHCCC-CCCCCCHHHHHHHHHHHHHHCCCC------------------CCC
T ss_conf 4699999988------------------875572-221255377899999999850245------------------542
Q ss_pred HHHHHHHHHHHCCCCCCCCCE-EEECCCCEEEECCCCCCCCCCEEEEEEC-----CEEEEEECCCCCCCCCCCEEECCCC
Q ss_conf 889999997711677998708-9940795699806989997742899849-----9999993365445899847771656
Q 000266 435 QRKALYEYFSALMEPWDGPAL-ISFTDGRYLGATLDRNGLRPGRFYITHS-----GRVIMASEVGVVDIPPEDVLRKGRL 508 (1760)
Q Consensus 435 e~rafyey~~~~mepwdGPa~-iv~tdg~~iga~lDrnGLRPlr~~~t~d-----~~~i~ASE~gaidi~~~~v~~kg~l 508 (1760)
+...+.+....++..|+|+|+ ++++.+..+.++|||+|+||| +++..+ +.|++|||++|++..+.++++ +|
T Consensus 148 ~~~~~~~~i~~~~~~l~Gs~~~~~~~~~~~~~~~rD~~GirPL-~~G~~~~~~~~~~~~vaSE~~Al~~~~~~~i~--~l 224 (249)
T d1ecfa2 148 EADNIFAAIAATNRLIRGAYACVAMIIGHGMVAFRDPNGIRPL-VLGKRDIDENRTEYMVASESVALDTLGFDFLR--DV 224 (249)
T ss_dssp CHHHHHHHHHHHHHHCCEEEEEEEEETTTEEEEEECTTCCSCC-EEEEEECSSSCEEEEEESSTHHHHHHTCEEEE--EC
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECCCCCCC-EECCCCCCCCCCEEEEEECHHHHHHCCCEEEE--EC
T ss_conf 0356999999999754798469998538986089804888654-35243236888679999677988545955999--85
Q ss_pred CCCCEEEEECCCC
Q ss_conf 8992999984997
Q 000266 509 NPGMMLLVDFEKR 521 (1760)
Q Consensus 509 ~PGemi~vd~~~g 521 (1760)
+|||++.++.++.
T Consensus 225 ~pGe~v~i~~~G~ 237 (249)
T d1ecfa2 225 APGEAIYITEEGQ 237 (249)
T ss_dssp CTTEEEEEETTCC
T ss_pred CCCEEEEEECCCC
T ss_conf 9986999979998
|
| >d1gph12 d.153.1.1 (1:1-234) Glutamine PRPP amidotransferase, N-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Class II glutamine amidotransferases domain: Glutamine PRPP amidotransferase, N-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.93 E-value=3.8e-25 Score=189.54 Aligned_cols=186 Identities=20% Similarity=0.217 Sum_probs=151.6
Q ss_pred CCEEEEEECCCEE-EEECCCCHHCHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCE---------EEECCCC
Q ss_conf 8389999568808-99821151101001001479988651189985214579999989898741---------0200455
Q 000266 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMR---------ILGHNGE 353 (1760)
Q Consensus 284 ~~~yI~Sls~~ti-VyKG~g~~~qv~~~y~~DL~d~~~~s~~ai~H~RySTNt~psw~~AQPfr---------~laHNGE 353 (1760)
+.++|++.++..+ ++|+.+++..+..... + ..+.+.++++|+||+|++.++-.++||+. .++|||+
T Consensus 29 Ds~Gi~~~~~~~~~~~k~~g~~~~~~~~~~--~--~~~~g~~~igh~r~~t~g~~~~~~~~p~~~~~~~~~~~~lvhNG~ 104 (234)
T d1gph12 29 EGAGIVATDGEKLTAHKGQGLITEVFQNGE--L--SKVKGKGAIGHVRYATAGGGGYENVQPLLFRSQNNGSLALAHNGN 104 (234)
T ss_dssp SCEEEEEECSSCEEEEEESSCHHHHTCSSS--T--TTCCCSEEEEEECCCSSSCBCGGGSSCEEEBCTTTCCEEEEEEEE
T ss_pred CCCCEEEECCCEEEEEECCCCCCCCCHHHH--C--CCCCCCEEEEEECCCCCCCCHHCCCCCCCEECCCCCEEEEEECCC
T ss_conf 537389985998999953786313100111--2--367872566420013468850003555310024454399995562
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 55806679999973021110124884788852169558999967999999999999199999999870853311478899
Q 000266 354 INTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMD 433 (1760)
Q Consensus 354 Int~~gN~n~m~are~~~~s~~~g~~~~~l~~~~pi~~~~~SDSe~ld~~le~l~~~g~sl~eAi~~~iPeaw~~~~~m~ 433 (1760)
|.|+..+++.+..+ +. .+.+.|||+++.+.++. ....++.+|+..+
T Consensus 105 I~N~~eL~~~l~~~-------------------g~-~f~~~td~e~~~~~~~~--~~~~~~~~ai~~~------------ 150 (234)
T d1gph12 105 LVNATQLKQQLENQ-------------------GS-IFQTSSDTEVLAHLIKR--SGHFTLKDQIKNS------------ 150 (234)
T ss_dssp ETTHHHHHHHHHHT-------------------TC-CBSSCCHHHHHHHHHHT--CCCSSHHHHHHHH------------
T ss_pred CCCHHHHHHHHHHC-------------------CC-EEEEECCHHHHHHHHHH--HHHHHHHHHHHHH------------
T ss_conf 35899999999976-------------------98-63330440577888998--7544479999998------------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEECCCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCCEEECCCCCCCCE
Q ss_conf 88899999977116779987089940795699806989997742899849999999336544589984777165689929
Q 000266 434 PQRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMM 513 (1760)
Q Consensus 434 ~e~rafyey~~~~mepwdGPa~iv~tdg~~iga~lDrnGLRPlr~~~t~d~~~i~ASE~gaidi~~~~v~~kg~l~PGem 513 (1760)
++.|+|.|++++.+...+.++|||+|.||| |++..++.+++|||.+|++....+.++ +|.|||+
T Consensus 151 -------------~~~l~G~~a~~i~~~~~~~~~rD~~G~~PL-~~g~~~~~~~~aSE~~al~~~~~~~i~--el~pGei 214 (234)
T d1gph12 151 -------------LSMLKGAYAFLIMTETEMIVALDPNGLRPL-SIGMMGDAYVVASETCAFDVVGATYLR--EVEPGEM 214 (234)
T ss_dssp -------------HTTCCEEEEEEEECSSCEEEEECTTCCSCC-EEEEETTEEEEESSTHHHHHHTCEEEE--ECCTTEE
T ss_pred -------------HHHCCCCEEEEEEECCCEEEEECCCCCCCE-EEEECCCEEEEEECHHHHHHCCCCEEE--ECCCCEE
T ss_conf -------------873688247888606740699857898677-999058889999877988645872899--7499979
Q ss_pred EEEECCCCEE
Q ss_conf 9998499778
Q 000266 514 LLVDFEKRIV 523 (1760)
Q Consensus 514 i~vd~~~g~i 523 (1760)
+.++.++-++
T Consensus 215 i~i~~~g~~~ 224 (234)
T d1gph12 215 LIINDEGMKS 224 (234)
T ss_dssp EEEETTEEEE
T ss_pred EEEECCCCEE
T ss_conf 9992999899
|
| >d1xffa_ d.153.1.1 (A:) Glucosamine 6-phosphate synthase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Class II glutamine amidotransferases domain: Glucosamine 6-phosphate synthase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=6.7e-25 Score=187.82 Aligned_cols=195 Identities=16% Similarity=0.086 Sum_probs=153.5
Q ss_pred HHHHHHCCCCCCCEEEEEECCC-EE-EEECCCCHHCHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEE---
Q ss_conf 9843101599983899995688-08-998211511010010014799886511899852145799999898987410---
Q 000266 273 RESLNLEHGGAKDFYICSLSSR-TV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRI--- 347 (1760)
Q Consensus 273 ~~~~~~~~~~~~~~yI~Sls~~-ti-VyKG~g~~~qv~~~y~~DL~d~~~~s~~ai~H~RySTNt~psw~~AQPfr~--- 347 (1760)
+|+. .+.++|+.++++ .+ ++|+.+.+..+...+. + ..+.+.++|||+||+|++.++..++|||..
T Consensus 24 qhRG------~Ds~Gi~~~~~~~~~~~~k~~~~~~~~~~~~~--~--~~~~g~~~igH~R~aT~g~~~~~n~~p~~~~~~ 93 (238)
T d1xffa_ 24 EYRG------YDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAE--E--HPLHGGTGIAHTRWATHGEPSEVNAHPHVSEHI 93 (238)
T ss_dssp GGGC------CSEEEEEEECTTCCEEEEEEESCHHHHHHHHH--H--SCCCCSEEEEEEECCSSSCSSTTTSSCEEETTE
T ss_pred CCCC------CCCCCEEEECCCCCEEEEEECCCCCCCCCCCC--C--CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCE
T ss_conf 3558------55068899918998999962010124422211--2--356885777440233225534459962357748
Q ss_pred -EECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCC
Q ss_conf -2004555580667999997302111012488478885216955899996799999999999919999999987085331
Q 000266 348 -LGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAW 426 (1760)
Q Consensus 348 -laHNGEInt~~gN~n~m~are~~~~s~~~g~~~~~l~~~~pi~~~~~SDSe~ld~~le~l~~~g~sl~eAi~~~iPeaw 426 (1760)
++|||+|.|+..+++.+. +.+. .+.+.||||++.++++.....+.++++++..+
T Consensus 94 ~~vhNG~I~N~~~L~~~L~-------------------~~g~-~f~s~sDtEvi~~l~~~~~~~~~~~~e~i~~~----- 148 (238)
T d1xffa_ 94 VVVHNGIIENHEPLREELK-------------------ARGY-TFVSETDTEVIAHLVNWELKQGGTLREAVLRA----- 148 (238)
T ss_dssp EEEEEEEETTHHHHHHHHH-------------------HTTC-CCCSCCSHHHHHHHHHHHHHTSSCHHHHHHHH-----
T ss_pred EEEECCCCCCHHHHHHHHH-------------------HCCC-CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH-----
T ss_conf 9998573367999999999-------------------8699-73237863343344667663278799999999-----
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEECCCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCCEEECC
Q ss_conf 14788998889999997711677998708994079569980698999774289984999999933654458998477716
Q 000266 427 QNDKNMDPQRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKG 506 (1760)
Q Consensus 427 ~~~~~m~~e~rafyey~~~~mepwdGPa~iv~tdg~~iga~lDrnGLRPlr~~~t~d~~~i~ASE~gaidi~~~~v~~kg 506 (1760)
++.|+|.|++++.+.......+|+.+.||| |++..++.+++|||.+++.-...+++
T Consensus 149 --------------------~~~l~G~~a~~i~~~~~~~~i~~~~~~~PL-~~g~~~~~~~~aSE~~al~~~~~~~~--- 204 (238)
T d1xffa_ 149 --------------------IPQLRGAYGTVIMDSRHPDTLLAARSGSPL-VIGLGMGENFIASDQLALLPVTRRFI--- 204 (238)
T ss_dssp --------------------GGGCCEEEEEEEEETTCTTCEEEEEEBSCC-EEEECSSCEEEESSGGGTTTTCSEEE---
T ss_pred --------------------HHHCCCCHHHHHHHCCCCCEEEEECCCCCC-EEEECCCEEEEECCHHHHHHHHCEEE---
T ss_conf --------------------987148411143312589899997799667-89987865999847899887416699---
Q ss_pred CCCCCCEEEEECCCCEEECH
Q ss_conf 56899299998499778042
Q 000266 507 RLNPGMMLLVDFEKRIVVDD 526 (1760)
Q Consensus 507 ~l~PGemi~vd~~~g~i~~~ 526 (1760)
.|+|||++.++.++-.+++.
T Consensus 205 ~l~~gei~~i~~~~i~i~d~ 224 (238)
T d1xffa_ 205 FLEEGDIAEITRRSVNIFDK 224 (238)
T ss_dssp ECCTTCEEEECSSCEEEECT
T ss_pred EECCCEEEEEECCCEEEECC
T ss_conf 96898399990891899969
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.86 E-value=9.1e-21 Score=158.83 Aligned_cols=314 Identities=15% Similarity=0.138 Sum_probs=187.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CEEECCCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCC
Q ss_conf 6754334334456789999888777333346------4474579843474999999999999709963216999992365
Q 000266 979 KTCNLRGLLKFKEADVKIPLEEVEPASEIVK------RFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRM 1052 (1760)
Q Consensus 979 ~~~~~r~ll~~~~~~~~i~~~~Ve~~t~i~~------Pf~isaMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGg~~~e~~ 1052 (1760)
...++-+++ +.+.+..+.-++|+..+.|.. |++.+||.. ..++ .+|.+++++|++.+..- .+++|+.
T Consensus 12 ~~LtfdDVl-lvP~~st~~sr~V~l~t~lt~~~~l~iPIIsApMdt-Vt~~----~mA~als~~GGLGvLhr-~~~~e~~ 84 (378)
T d1jr1a1 12 DGLTYNDFL-ILPGYIDFTADQVDLTSALTKKITLKTPLVSSPMDT-VTEA----GMAIAMALTGGIGFIHH-NCTPEFQ 84 (378)
T ss_dssp CCCCGGGEE-ECCCCCCSCGGGCBCCEESSSSCEESSCEEECCCTT-TCSH----HHHHHHHHHTCEEEECC-SSCHHHH
T ss_pred CCCCCCCEE-EECCCCCCCHHHCEEEEEEECCCCCCCCEEECCCCC-CCCH----HHHHHHHHCCCEEEECC-CCCHHHH
T ss_conf 888844679-847988776777562069887856899879799987-3889----99999997899469769-9999999
Q ss_pred CCCCCCCCCHHHHHEEECCCCCCCCCHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 76789998413431232144886779564347126777663057889889878754218999880898863333899999
Q 000266 1053 EPLSDGSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHH 1132 (1760)
Q Consensus 1053 ~~~~~g~~~~~~s~IkQvasgrFGvt~~~L~~a~~ieIKiaQGAKpG~GG~Lpg~kv~~~IA~~r~~~~G~~lisP~~h~ 1132 (1760)
.. ....++.+...++...... -++.-++--|. .+..+ ..+..+. ..+++.+.-...|
T Consensus 85 ~~--------ev~~v~~~~~~p~~~~~~~--------~~l~v~aavg~---~~~~~--~~~~~l~--~agv~vi~id~a~ 141 (378)
T d1jr1a1 85 AN--------EVRKVKKYEQYPLASKDAK--------KQLLCGAAIGT---HEDDK--YRLDLLA--LAGVDVVVLDSSQ 141 (378)
T ss_dssp HH--------HHHHHHTSCCCTTCCBCTT--------SCBCCEEEECS---STHHH--HHHHHHH--HHTCCEEEECCSS
T ss_pred HH--------HHHEEHHHHHCCCCCCCCC--------CCEEEEEEECC---CHHHH--HHHHHHH--HHCCCEEEEECCC
T ss_conf 98--------8764110432764333554--------67899999566---87789--9999997--5155557640367
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 99999989999999997399992689981136889999999984997999923999989985222124688889999999
Q 000266 1133 DIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAET 1212 (1760)
Q Consensus 1133 diySiEdL~qlI~~Lr~~~p~~pI~VKlv~~~Gig~vA~~aakaGAD~IvIsG~~GGTGaa~~~si~~~GlP~~~~L~ev 1212 (1760)
. ++ +...+.+.++|...|+.+|++-.|... ..|..++++|||+|.|.+.+|+.+.++. ....|.|...++.++
T Consensus 142 g-~~-~~~~~~i~~ik~~~~~~~iIaGnVaT~---e~a~~L~~aGAD~VkVGiG~Gs~ctTr~--~tGvG~pq~sai~~~ 214 (378)
T d1jr1a1 142 G-NS-IFQINMIKYMKEKYPNLQVIGGNVVTA---AQAKNLIDAGVDALRVGMGCGSICITQE--VLACGRPQATAVYKV 214 (378)
T ss_dssp C-CS-HHHHHHHHHHHHHSTTCEEEEEEECSH---HHHHHHHHHTCSEEEECSSCSTTBCHHH--HHCCCCCHHHHHHHH
T ss_pred C-CC-HHHHHHHHHHHHHCCCCCEEECCCCCH---HHHHHHHHHCCCEEEECCCCCCCCCCCC--CCCCCCCCCHHHHHH
T ss_conf 6-20-235799999998789972530220129---9999999829997860331354444542--223476652025678
Q ss_pred HHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCC---CCCCCCCCCH-----HH
Q ss_conf 999884799984099986986799999999991998112351679983010011343598---9873221393-----56
Q 000266 1213 HQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNT---CPVGIATQDP-----VL 1284 (1760)
Q Consensus 1213 ~q~L~~~glr~rV~IiadGGIrtG~DV~KALaLGAdaVgiGta~L~algc~~~r~c~~~~---cp~giatqdp-----~l 1284 (1760)
.++.... .++|||||||+++.|++|||++|||+|++|+.|.-+-.|-+--.-+.+. --.|-+.... ..
T Consensus 215 ~~~a~~~----~vpIIADGGi~~~gdiakAla~GAd~VMmGs~fAgt~EspG~~~~~~g~~~k~~~gm~S~~a~~~~~~~ 290 (378)
T d1jr1a1 215 SEYARRF----GVPVIADGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKHLSS 290 (378)
T ss_dssp HHHHGGG----TCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCCEESSSCEEEEEECTTSTTTC------
T ss_pred HHHHCCC----CCCEECCCCCCCCCCEEEEEEEECCEEEECCEEEEEECCCCCCCEECCCEEEECCCCCHHHHHHCCCCH
T ss_conf 8751156----985342533354773246888605435532321342004675231468332312431045554401320
Q ss_pred HHHC---------CCC-------HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHC-----CCCCEEECCCC
Q ss_conf 7420---------898-------9999999999999999999952998833320-----89741321300
Q 000266 1285 REKF---------AGE-------PEHVINFFFMLAEELREIMSQLGFRTITEMI-----GRSDMLEVDKE 1333 (1760)
Q Consensus 1285 r~~~---------~g~-------~e~V~n~l~~l~~ELr~~Ma~lG~~si~elv-----gr~dll~~~~~ 1333 (1760)
..++ .-+ --.|.+++..+...||..|..+|+++|.||. ++..+...+..
T Consensus 291 ~~~~~~~~~~~~~~eG~~~~v~~~G~v~~~~~~l~gglrs~m~y~G~~~l~e~~~~~~~~~~~f~~~t~~ 360 (378)
T d1jr1a1 291 QNRYFSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRAMMYSGELKFEKRTSS 360 (378)
T ss_dssp ----------CCCCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHHHHHSCSCEEECCHH
T ss_pred HHHHCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEECHH
T ss_conf 3321033456447873178503687789999999999888652657573999975333577269998845
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=99.86 E-value=8.7e-21 Score=158.95 Aligned_cols=294 Identities=17% Similarity=0.206 Sum_probs=182.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CEEECCCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCC
Q ss_conf 54334334456789999888777333346------447457984347499999999999970996321699999236576
Q 000266 981 CNLRGLLKFKEADVKIPLEEVEPASEIVK------RFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEP 1054 (1760)
Q Consensus 981 ~~~r~ll~~~~~~~~i~~~~Ve~~t~i~~------Pf~isaMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGg~~~e~~~~ 1054 (1760)
.++.+++ +.+.+..+.-++|+..+.+.. ||+.++|..-. .+ .+|.+++++|++....- ..++++...
T Consensus 5 LtfdDVl-lvP~~s~~~sr~vdl~t~lt~~l~~~iPIIaa~MdtV~-~~----~mA~als~~GGlGvi~r-~~~~e~~~~ 77 (330)
T d1vrda1 5 LTFDDVL-LVPQYSEVLPKDVKIDTRLTRQIRINIPLVSAAMDTVT-EA----ALAKALAREGGIGIIHK-NLTPDEQAR 77 (330)
T ss_dssp CCGGGEE-ECCCCCCCCGGGSCCCEESSSSCEESSSEEECCCTTTC-SH----HHHHHHHTTTCEEEECS-SSCHHHHHH
T ss_pred CCCCCEE-EECCCCCCCCCCCEEEEEEECCCCCCCCEEECCCCCCC-CH----HHHHHHHHCCCEEEEEC-CCCHHHHHH
T ss_conf 6654289-86787876633025778972574668888968988748-99----99999997899178603-556256677
Q ss_pred CCCCCCCHHHHHEEECCCCCCCCCHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCC--C-CCCCC
Q ss_conf 78999841343123214488677956434712677766305788988987875421899988089886333--3-89999
Q 000266 1055 LSDGSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGL--I-SPPPH 1131 (1760)
Q Consensus 1055 ~~~g~~~~~~s~IkQvasgrFGvt~~~L~~a~~ieIKiaQGAKpG~GG~Lpg~kv~~~IA~~r~~~~G~~l--i-sP~~h 1131 (1760)
.. ......+......+|+++.++..++.+ +. .|+++ + ...+
T Consensus 78 ~i-----~~vk~~~~~v~~~vgv~~~~~e~~~~l---i~---------------------------agvd~ivId~A~G- 121 (330)
T d1vrda1 78 QV-----SIVKKTRLLVGAAVGTSPETMERVEKL---VK---------------------------AGVDVIVIDTAHG- 121 (330)
T ss_dssp HH-----HHHHTCCBCCEEEECSSTTHHHHHHHH---HH---------------------------TTCSEEEECCSCC-
T ss_pred HH-----HHHHHHCCEEEEEEECCHHHHHHHHHH---HH---------------------------CCCCEEEEECCCC-
T ss_conf 99-----987541647999981488999999999---98---------------------------7998899946887-
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 99999998999999999739999268998113688999999998499799992399998998522212468888999999
Q 000266 1132 HDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAE 1211 (1760)
Q Consensus 1132 ~diySiEdL~qlI~~Lr~~~p~~pI~VKlv~~~Gig~vA~~aakaGAD~IvIsG~~GGTGaa~~~si~~~GlP~~~~L~e 1211 (1760)
++ +.+.+.+.++|...|+.+|++..+.. ...+..+.++|||+|.|....|+.+..+ ..-..|.|...++.+
T Consensus 122 ---~~-~~~~~~ik~ik~~~~~~~viaGnV~t---~~~a~~l~~~GaD~v~VGig~Gs~ctt~--~~~G~g~p~~sai~~ 192 (330)
T d1vrda1 122 ---HS-RRVIETLEMIKADYPDLPVVAGNVAT---PEGTEALIKAGADAVKVGVGPGSICTTR--VVAGVGVPQLTAVME 192 (330)
T ss_dssp ---SS-HHHHHHHHHHHHHCTTSCEEEEEECS---HHHHHHHHHTTCSEEEECSSCSTTCHHH--HHHCCCCCHHHHHHH
T ss_pred ---CC-HHHHHHHHHHHHHCCCCCEEEECHHH---HHHHHHHHHCCCCEEEECCCCCCCCCCC--CEECCCCCCCHHHHH
T ss_conf ---73-33779999988758998789503068---9999999983899884053267344650--133211254205778
Q ss_pred HHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCC---CCCCCCCCCCH---HHH
Q ss_conf 999988479998409998698679999999999199811235167998301001134359---89873221393---567
Q 000266 1212 THQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKN---TCPVGIATQDP---VLR 1285 (1760)
Q Consensus 1212 v~q~L~~~glr~rV~IiadGGIrtG~DV~KALaLGAdaVgiGta~L~algc~~~r~c~~~---~cp~giatqdp---~lr 1285 (1760)
+.++.... .++|||||||+++.|++|||+||||+|++|+.|.-+-.|-+-..-..+ ....|-++... ...
T Consensus 193 ~~~~~~~~----~vpvIAdGGi~~~gdiakAla~GAd~Vm~Gs~fa~~~E~pg~~~~~~g~~~k~~~g~~s~~~~~~~~~ 268 (330)
T d1vrda1 193 CSEVARKY----DVPIIADGGIRYSGDIVKALAAGAESVMVGSIFAGTEEAPGETILYQGRKYKAYRGMGSLGAMRSGSA 268 (330)
T ss_dssp HHHHHHTT----TCCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSEEEEETTEEEEECBCCC----------
T ss_pred HHHHHHHC----CCEEEECCCCCCCCCHHEEEECCCCEEEECCHHEEECCCCCCEEEECCCEEEECCCCCCCCCCCCCCH
T ss_conf 99999755----96699327714587531010104763463321001112575179988955035044231120235740
Q ss_pred HHCCC------CHH----------HHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEEC
Q ss_conf 42089------899----------9999999999999999995299883332089741321
Q 000266 1286 EKFAG------EPE----------HVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEV 1330 (1760)
Q Consensus 1286 ~~~~g------~~e----------~V~n~l~~l~~ELr~~Ma~lG~~si~elvgr~dll~~ 1330 (1760)
.++.. -+| .|.+.+..+...||..|..+|+++|.||..++.+.++
T Consensus 269 ~~~~~~~~~~~~~eG~~~~v~~~g~~~~~~~~l~gglrs~~~y~G~~~l~~~~~~~~fvrv 329 (330)
T d1vrda1 269 DRYGQEGENKFVPEGIEGMVPYKGTVKDVVHQLVGGLRSGMGYIGARTIKELQEKAVFVKI 329 (330)
T ss_dssp ---------------CBCCEECCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHCCEEEC
T ss_pred HHCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEEEE
T ss_conf 1004565533157872885588888899999999999998763485509888319789995
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=99.84 E-value=3.7e-19 Score=147.58 Aligned_cols=319 Identities=17% Similarity=0.191 Sum_probs=187.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CEEECCCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCC
Q ss_conf 754334334456789999888777333346------44745798434749999999999997099632169999923657
Q 000266 980 TCNLRGLLKFKEADVKIPLEEVEPASEIVK------RFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRME 1053 (1760)
Q Consensus 980 ~~~~r~ll~~~~~~~~i~~~~Ve~~t~i~~------Pf~isaMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGg~~~e~~~ 1053 (1760)
..++-+++ +.+.+..+.-++|+..+.|.+ ||+.+||- +..+. .+|+++++.|++.+..- .++.|+..
T Consensus 7 ~LtfDDVl-LvP~~st~~~~~vdl~~~~t~~~~l~iPIisA~MD-tVt~~----~mAi~ma~~GGlgVihr-~~~ie~q~ 79 (388)
T d1eepa_ 7 ALTFDDVS-LIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMD-TVTES----QMAIAIAKEGGIGIIHK-NMSIEAQR 79 (388)
T ss_dssp CCCGGGEE-ECCCCCCSCGGGCCCCEESSSSCEESSSEEECCCT-TTCSH----HHHHHHHHHTSEEEECS-SSCHHHHH
T ss_pred CCCCCCEE-EECCCCCCCHHHCEEEEEEECCEECCCCEEECCCC-CCCCH----HHHHHHHHCCCEEEEEC-CCCHHHHH
T ss_conf 78841079-82798877777835448953877669987716988-87889----99999998798899908-99999999
Q ss_pred CCCCCCCCHHHHHEEECCCCCCCCCH-----------HH------HCCCHHHH--HH---HHCCCCCCCCCCCC-----C
Q ss_conf 67899984134312321448867795-----------64------34712677--76---63057889889878-----7
Q 000266 1054 PLSDGSMNPKRSAIKQVASGRFGVSS-----------YY------LTNADELQ--IK---MAQGAKPGEGGELP-----G 1106 (1760)
Q Consensus 1054 ~~~~g~~~~~~s~IkQvasgrFGvt~-----------~~------L~~a~~ie--IK---iaQGAKpG~GG~Lp-----g 1106 (1760)
..+.++.+.+|.... +. +...+... .| +-+..+... +.|. +
T Consensus 80 -----------~~v~~Vk~~~~~~~~~~~~d~~~~~~~~~t~~~~~~~~~a~~d~~~~~~~p~~~~d~~-~~l~vgaAvg 147 (388)
T d1eepa_ 80 -----------KEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLN-NKLRVGAAVS 147 (388)
T ss_dssp -----------HHHHHHHTCC--------------------------------------CCTTCCBCTT-SCBCCEEEEC
T ss_pred -----------HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHCCC
T ss_conf -----------9999862300445200367633102233005544225478771888765067776552-2410122058
Q ss_pred --CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf --542189998808988633338999999999998999999999739999268998113688999999998499799992
Q 000266 1107 --HKVIGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLIS 1184 (1760)
Q Consensus 1107 --~kv~~~IA~~r~~~~G~~lisP~~h~diySiEdL~qlI~~Lr~~~p~~pI~VKlv~~~Gig~vA~~aakaGAD~IvIs 1184 (1760)
.........+. ..|.+++-...-|. ++ +.+.++|.++|..+|++||++-.+.. ...+..+.++|||+|.|.
T Consensus 148 ~~~~~~~ra~~L~--~aG~D~ivID~AhG-~s-~~~~~~i~~ik~~~~~v~vIaGNV~T---~e~a~~L~~~GaD~VkVG 220 (388)
T d1eepa_ 148 IDIDTIERVEELV--KAHVDILVIDSAHG-HS-TRIIELIKKIKTKYPNLDLIAGNIVT---KEAALDLISVGADCLKVG 220 (388)
T ss_dssp SCTTHHHHHHHHH--HTTCSEEEECCSCC-SS-HHHHHHHHHHHHHCTTCEEEEEEECS---HHHHHHHHTTTCSEEEEC
T ss_pred CCHHHHHHHHHHH--HHCCCEEEEECCCC-CH-HHHHHHHHHHHHHCCCCCEEECCCCC---HHHHHHHHHCCCCEEEEC
T ss_conf 9789999999877--51254543103663-16-77999999999878998665001267---999999986297755431
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCC
Q ss_conf 39999899852221246888899999999998847999840999869867999999999919981123516799830100
Q 000266 1185 GHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIM 1264 (1760)
Q Consensus 1185 G~~GGTGaa~~~si~~~GlP~~~~L~ev~q~L~~~glr~rV~IiadGGIrtG~DV~KALaLGAdaVgiGta~L~algc~~ 1264 (1760)
...|..+.++. ....|.|...++.++.++... ..++||+||||+++.||+|||++|||+|++|+++.-+..+-+
T Consensus 221 iGpGs~CtTr~--~~GvG~pq~sai~~~~~~~~~----~~vpiIADGGi~~~Gdi~KAla~GAd~VMlG~~lAg~~Espg 294 (388)
T d1eepa_ 221 IGPGSICTTRI--VAGVGVPQITAICDVYEACNN----TNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPS 294 (388)
T ss_dssp SSCSTTSHHHH--HHCCCCCHHHHHHHHHHHHTT----SSCEEEEESCCCSHHHHHHHHHHTCSEEEECHHHHTBTTSSS
T ss_pred CCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHCC----CCCEEEECCCCCCCCCEEEEEEECCCEEECCHHHHCCCCCCC
T ss_conf 22232345654--236674238899999998615----771578536667377301367851550340536541367884
Q ss_pred CCCCCCC----CCCCCCCCCCHH---HHHHCC---------CCHH----------HHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 1134359----898732213935---674208---------9899----------9999999999999999995299883
Q 000266 1265 MRKCHKN----TCPVGIATQDPV---LREKFA---------GEPE----------HVINFFFMLAEELREIMSQLGFRTI 1318 (1760)
Q Consensus 1265 ~r~c~~~----~cp~giatqdp~---lr~~~~---------g~~e----------~V~n~l~~l~~ELr~~Ma~lG~~si 1318 (1760)
- .-+.+ ..-.|-++-... -+.++. -.+| .|.+.+..+...||..|..+|+++|
T Consensus 295 ~-~~~~~g~~~k~~~gm~S~~a~~~g~~~~~~~~~~~~~~~~~~EG~~~~v~~~G~~~~~~~~l~gglrs~m~y~Ga~~l 373 (388)
T d1eepa_ 295 E-EIIYNGKKFKSYVGMGSISAMKRGSKSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATI 373 (388)
T ss_dssp C-EEEETTEEEEC------------------------------------CEECCBCHHHHHHHHHHHHHHHHHHHTCSSH
T ss_pred E-EEEECCCEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 1-898589274015566548777544521013334664422346704987078887899999999999997421586629
Q ss_pred HHHCCCCCEEECC
Q ss_conf 3320897413213
Q 000266 1319 TEMIGRSDMLEVD 1331 (1760)
Q Consensus 1319 ~elvgr~dll~~~ 1331 (1760)
.||..++.+.+++
T Consensus 374 ~e~~~~~~fv~vt 386 (388)
T d1eepa_ 374 SDLKINSKFVKIS 386 (388)
T ss_dssp HHHHHSCCEEECC
T ss_pred HHHHHCCEEEEEC
T ss_conf 9985398899978
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.81 E-value=3.1e-19 Score=148.13 Aligned_cols=290 Identities=17% Similarity=0.189 Sum_probs=182.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CEEECCCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCC
Q ss_conf 754334334456789999888777333346------44745798434749999999999997099632169999923657
Q 000266 980 TCNLRGLLKFKEADVKIPLEEVEPASEIVK------RFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRME 1053 (1760)
Q Consensus 980 ~~~~r~ll~~~~~~~~i~~~~Ve~~t~i~~------Pf~isaMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGg~~~e~~~ 1053 (1760)
.-++.+++ +.+.+..+.-++|++.+.|.. ||+.++|-. ..++ .+|.+++++|++.+..-- .++++..
T Consensus 11 ~l~fdDVl-lvP~~st~~s~~vdl~~~it~~~~~~iPIIsA~MDt-V~~~----~mA~~ls~~Gglgvlhr~-~~~~e~~ 83 (365)
T d1zfja1 11 GYTFDDVL-LIPAESHVLPNEVDLKTKLADNLTLNIPIITAAMDT-VTGS----KMAIAIARAGGLGVIHKN-MSITEQA 83 (365)
T ss_dssp CCCGGGEE-ECCCCCCSCGGGCCCCEEEETTEEESSSEEECCCTT-TCSH----HHHHHHHHTTCEEEECCS-SCHHHHH
T ss_pred CCCCCEEE-EECCCCCCCHHHCEEEEEEECCCCCCCCEEECCCCC-CCCH----HHHHHHHHCCCCEEECCC-CCHHHHH
T ss_conf 68801089-857877767767262379648952689889789887-6888----999999977991697486-6789988
Q ss_pred CCCCCCCCHHHHHEEECCCCCCCCCHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCC--CCCCCC
Q ss_conf 678999841343123214488677956434712677766305788988987875421899988089886333--389999
Q 000266 1054 PLSDGSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGL--ISPPPH 1131 (1760)
Q Consensus 1054 ~~~~g~~~~~~s~IkQvasgrFGvt~~~L~~a~~ieIKiaQGAKpG~GG~Lpg~kv~~~IA~~r~~~~G~~l--isP~~h 1131 (1760)
.... ......-+.+...-.|++.+++..+..+ + ..|+++ +.....
T Consensus 84 ~~~~---~~~~~~~~~~v~aavGv~~~~~er~~~l---~---------------------------~agvd~ivID~A~G 130 (365)
T d1zfja1 84 EEVR---KVKRSEGRLLVAAAVGVTSDTFERAEAL---F---------------------------EAGADAIVIDTAHG 130 (365)
T ss_dssp HHHH---HHHHHTSCBCCEEEECSSTTHHHHHHHH---H---------------------------HHTCSEEEECCSCT
T ss_pred HHHH---HHHHCCCCEEEEEEECCCCHHHHHHHHH---H---------------------------HCCCCEEEEECCCC
T ss_conf 7766---5443037569999944681277899999---9---------------------------86998899978865
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 99999998999999999739999268998113688999999998499799992399998998522212468888999999
Q 000266 1132 HDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAE 1211 (1760)
Q Consensus 1132 ~diySiEdL~qlI~~Lr~~~p~~pI~VKlv~~~Gig~vA~~aakaGAD~IvIsG~~GGTGaa~~~si~~~GlP~~~~L~e 1211 (1760)
++ +.....+.++|...|+.+|++-.|.. ...+..+.++|||+|.|....|+.+.++. ....|.|...++.+
T Consensus 131 ---~s-~~~~~~i~~ik~~~~~~~iIaGNV~T---~e~a~~L~~aGaD~VkVGiG~Gs~CTTr~--~tGvGvPq~sai~~ 201 (365)
T d1zfja1 131 ---HS-AGVLRKIAEIRAHFPNRTLIAGNIAT---AEGARALYDAGVDVVKVGIGPGSICTTRV--VAGVGVPQVTAIYD 201 (365)
T ss_dssp ---TC-HHHHHHHHHHHHHCSSSCEEEEEECS---HHHHHHHHHTTCSEEEECSSCCTTBCHHH--HTCCCCCHHHHHHH
T ss_pred ---CC-CCHHHHHHHHHHHCCCCCEEECCCCC---HHHHHHHHHCCCCEEEEEECCCCCCCCCC--EEEEECCCHHHHHH
T ss_conf ---54-32147889998658876444113434---89999998669763786402564456763--01342242138999
Q ss_pred HHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC-----------
Q ss_conf 999988479998409998698679999999999199811235167998301001134359898732213-----------
Q 000266 1212 THQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQ----------- 1280 (1760)
Q Consensus 1212 v~q~L~~~glr~rV~IiadGGIrtG~DV~KALaLGAdaVgiGta~L~algc~~~r~c~~~~cp~giatq----------- 1280 (1760)
+.++.... .++|||||||+++.|++|||++|||+|++|+.+--+. ++|--+-..
T Consensus 202 ~~~~~~~~----~~~iIADGGi~~~GDi~KAla~GAd~VMlG~~lAg~~-----------EsPG~~~~~~g~~~k~~~Gm 266 (365)
T d1zfja1 202 AAAVAREY----GKTIIADGGIKYSGDIVKALAAGGNAVMLGSMFAGTD-----------EAPGETEIYQGRKYKTYRGM 266 (365)
T ss_dssp HHHHHHHT----TCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBS-----------SCCCCEEEETTEEEEEEECT
T ss_pred HHHHHHHC----CCEEEECCCCCCCHHHHHHHHCCCCEEEECCHHCCCC-----------CCCCCEEEECCEEEEECCCC
T ss_conf 99999757----9569805884762066655321587898642210466-----------78974797778475552775
Q ss_pred -------CHHHHHHCC-----------CC-------HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEECCCC
Q ss_conf -------935674208-----------98-------999999999999999999995299883332089741321300
Q 000266 1281 -------DPVLREKFA-----------GE-------PEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVDKE 1333 (1760)
Q Consensus 1281 -------dp~lr~~~~-----------g~-------~e~V~n~l~~l~~ELr~~Ma~lG~~si~elvgr~dll~~~~~ 1333 (1760)
.+...+.+. .+ .-.+.+.+..+...||..|..+|+++|.||..++.+..++..
T Consensus 267 ~s~~a~~~~~~~r~~~~~~~~~~~~~~eG~~~~v~~~G~~~~~~~~l~gglrs~m~y~G~~~l~e~~~~~~fv~vt~~ 344 (365)
T d1zfja1 267 GSIAAMKKGSSDRYFQGSVNEANKLVPEGIEGRVAYKGAASDIVFQMLGGIRSGMGYVGAGDIQELHENAQFVEMSGA 344 (365)
T ss_dssp TSHHHHCC--------------CCCCCSBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHCCEEECCHH
T ss_pred CCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCEEEEECCC
T ss_conf 557555456644434455443221224684478546787789999999999998762487749999629889999922
|
| >d1te5a_ d.153.1.1 (A:) Hypothetical protein YafJ (PA1307) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Class II glutamine amidotransferases domain: Hypothetical protein YafJ (PA1307) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.73 E-value=5.9e-18 Score=139.14 Aligned_cols=192 Identities=16% Similarity=0.082 Sum_probs=114.5
Q ss_pred CCEEEEEECCCEE-EEECCCC--HHCHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCE--------EEECCC
Q ss_conf 8389999568808-9982115--1101001001479988651189985214579999989898741--------020045
Q 000266 284 KDFYICSLSSRTV-VYKGQLK--PIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMR--------ILGHNG 352 (1760)
Q Consensus 284 ~~~yI~Sls~~ti-VyKG~g~--~~qv~~~y~~DL~d~~~~s~~ai~H~RySTNt~psw~~AQPfr--------~laHNG 352 (1760)
+.++|+..+++.+ +||..+. .++++.... ...+.|.++|+|+||+|.+.++..|+|||. .++|||
T Consensus 33 DGwGia~~~~~~~~~~k~~~~~~~~~~~~~~~----~~~~~s~~~igHvR~AT~G~~~~~N~hPf~~~~~~~~~~f~HNG 108 (253)
T d1te5a_ 33 DGWGIAFYEGRGVRLFQDPLASVDSEVARLVQ----RFPIKSETVIGHIRQANVGKVGLSNTHPFIRELGGRYWTFAHNG 108 (253)
T ss_dssp CEEEEEEEETTEEEEEEECSBSSCCHHHHHHH----HSCCEEEEEEEEEEECCCSCCSGGGCSCEEEEETTEEEEEEEES
T ss_pred CEEEEEEEECCEEEEEECCCEECCCHHHHHHH----HCCCCCCEEEEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEEE
T ss_conf 72799999699489998276501578788886----37688868999926435799860237753998499989999712
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHH-HHHHCCC--CHHHHHHHCCCCCCCCC
Q ss_conf 55580667999997302111012488478885216955899996799999999-9999199--99999987085331147
Q 000266 353 EINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLE-LLVRAGR--SLPEAVMMMIPEAWQND 429 (1760)
Q Consensus 353 EInt~~gN~n~m~are~~~~s~~~g~~~~~l~~~~pi~~~~~SDSe~ld~~le-~l~~~g~--sl~eAi~~~iPeaw~~~ 429 (1760)
+|.|+...+. .+ ...+.+|||.++.++. .|..... ...+++...+
T Consensus 109 ~i~n~~~l~~-------------------~~------~~~g~tDse~~~~~i~~~l~~~~~~~~~~~~~~~~~------- 156 (253)
T d1te5a_ 109 QLADFQPKPG-------------------FY------RPVGETDSEAAFCDLLNRVRRAFPEPVPVEVLLPVL------- 156 (253)
T ss_dssp CBSSCCCCCC-------------------SS------CCSSCCHHHHHHHHHHHHHHHHCSSCCCHHHHHHHH-------
T ss_pred EEECHHHHHH-------------------HH------CCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHH-------
T ss_conf 5742045346-------------------41------546898654457999999875166678567889999-------
Q ss_pred CCCCHHHHHHHHH----HHHCCCCCCCCCEEEECCCCEEEECCCCCCCCCCEEEEEECCEEEEEECCCCCC---------
Q ss_conf 8899888999999----771167799870899407956998069899977428998499999993365445---------
Q 000266 430 KNMDPQRKALYEY----FSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVD--------- 496 (1760)
Q Consensus 430 ~~m~~e~rafyey----~~~~mepwdGPa~iv~tdg~~iga~lDrnGLRPlr~~~t~d~~~i~ASE~gaid--------- 496 (1760)
+.+.+- .+..+--+||..++++.++.... .+|+.+++|+ ++...+..++++||....+
T Consensus 157 -------~~~~~~~~~~~~~n~~~~dg~~l~a~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ivASep 227 (253)
T d1te5a_ 157 -------ISACDEYRKKGVFNALISDGDWLFTFCSSKLAY-ITRRAPFGPA-RLKDADLTVDFHAETTPDDVVTVIATEP 227 (253)
T ss_dssp -------HHHHHHHHTTBCCEEEEESSSCEEEECSSCEEE-EEEESSCCCE-EEECSSEEEEECCCSSTTCEEEEEESSC
T ss_pred -------HHHHHHHCCCEEEEEECCCCCEEEEEECCCCEE-EEECCCCCCE-EECCCCCCEEEECCCCCCCCEEEEEECC
T ss_conf -------999986342607999806788799996699439-9971698720-4316887167732202789789999064
Q ss_pred CCCCCEEECCCCCCCCEEEEECCCCEEE
Q ss_conf 8998477716568992999984997780
Q 000266 497 IPPEDVLRKGRLNPGMMLLVDFEKRIVV 524 (1760)
Q Consensus 497 i~~~~v~~kg~l~PGemi~vd~~~g~i~ 524 (1760)
+...+.|+ .|+||||+++. .|+|+
T Consensus 228 l~~~~~w~--~i~~Ge~vv~~--~Geii 251 (253)
T d1te5a_ 228 LTDNENWT--LQQSGEWVLWW--GGEVL 251 (253)
T ss_dssp SSSSSSCE--EECTTCEEEEE--TTEEE
T ss_pred CCCCCCEE--EECCCEEEEEE--CCEEE
T ss_conf 36998989--96998699998--99998
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.72 E-value=9.5e-17 Score=130.66 Aligned_cols=304 Identities=17% Similarity=0.192 Sum_probs=180.5
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CEEECCCCCCCCCHHHHHHHHHHHHHCCCCEECC
Q ss_conf 9999760026754334334456789999888777333346------4474579843474999999999999709963216
Q 000266 970 YSKRIQELNKTCNLRGLLKFKEADVKIPLEEVEPASEIVK------RFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTG 1043 (1760)
Q Consensus 970 y~~~~~~~~~~~~~r~ll~~~~~~~~i~~~~Ve~~t~i~~------Pf~isaMS~Gsls~ea~~aLA~Aa~~~G~~s~sG 1043 (1760)
|.+...+..+.-++.++| +.+.+..+.-.+|++++.|.+ ||+.++|-.- .+. .+|.+++++|++.+..
T Consensus 2 ~~~~~~~~~k~ltfdDVl-LvP~~sti~srdVdls~~~~~~~~l~iPIiss~MDtV-~~~----~mA~~la~~Gglgvlh 75 (368)
T d2cu0a1 2 FVEKLEKAIKGYTFDDVL-LIPQATEVEPKDVDVSTRITPNVKLNIPILSAAMDTV-TEW----EMAVAMAREGGLGVIH 75 (368)
T ss_dssp HHHHHHTCCCCCCGGGEE-ECCCCCSSCSTTCBCCEEEETTEEESSSEEECCCTTT-CSH----HHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHHCCCCCCEE-EECCCCCCCHHHCEEEEEEECCCCCCCCEEECCCCCC-CCH----HHHHHHHHCCCEEEEC
T ss_conf 678899887628800089-8589776766563653796188314889895798776-888----9999999789965750
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHEEECCCC---CCCCCHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 999992365767899984134312321448---86779564347126777663057889889878754218999880898
Q 000266 1044 EGGEQPSRMEPLSDGSMNPKRSAIKQVASG---RFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNST 1120 (1760)
Q Consensus 1044 eGg~~~e~~~~~~~g~~~~~~s~IkQvasg---rFGvt~~~L~~a~~ieIKiaQGAKpG~GG~Lpg~kv~~~IA~~r~~~ 1120 (1760)
- .+++|+.. ..++++... ...+.+.. .++-++.+..|. . ......+. .
T Consensus 76 r-~~~~e~~~-----------~~v~~v~~~e~~~~~~~d~~------~~~~v~~~~~~~--------~-~~r~~~l~--~ 126 (368)
T d2cu0a1 76 R-NMGIEEQV-----------EQVKRVKRAEKYKNAVRDEN------GELLVAAAVSPF--------D-IKRAIELD--K 126 (368)
T ss_dssp S-SSCHHHHH-----------HHHHHHHTCCCCTTCCBCTT------SCBCCEEEECTT--------C-HHHHHHHH--H
T ss_pred C-CCCHHHHH-----------HHHHHHHHHHHCCCCCCCCC------CCEEEEECCCHH--------H-HHHHHHHH--H
T ss_conf 6-48989999-----------98874334443241013667------637999325727--------7-89999999--8
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 86333389999999999989999999997399992689981136889999999984997999923999989985222124
Q 000266 1121 AGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKN 1200 (1760)
Q Consensus 1121 ~G~~lisP~~h~diySiEdL~qlI~~Lr~~~p~~pI~VKlv~~~Gig~vA~~aakaGAD~IvIsG~~GGTGaa~~~si~~ 1200 (1760)
.|++++--...|. |+ +.....+.++|... +.+|++--+.. -.......|||+|-|.-+.|..+.++. ...
T Consensus 127 aGvd~ivID~A~G-h~-~~~i~~lK~ir~~~-~~~vIaGNVaT-----~e~~~~l~gaD~VkVGIG~Gs~CTTr~--~tG 196 (368)
T d2cu0a1 127 AGVDVIVVDTAHA-HN-LKAIKSMKEMRQKV-DADFIVGNIAN-----PKAVDDLTFADAVKVGIGPGSICTTRI--VAG 196 (368)
T ss_dssp TTCSEEEEECSCC-CC-HHHHHHHHHHHHTC-CSEEEEEEECC-----HHHHTTCTTSSEEEECSSCSTTBCHHH--HTC
T ss_pred CCCCEEEECCCCC-CH-HHHHHHHHHHHHHC-CCCEEECCCCC-----HHHHHHHHCCCCEEECCCCCCCCCCHH--HCC
T ss_conf 3998798437542-01-24566665541210-43132211367-----999976522762144456755553321--124
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 68888999999999988479998409998698679999999999199811235167998301001134359898732213
Q 000266 1201 AGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQ 1280 (1760)
Q Consensus 1201 ~GlP~~~~L~ev~q~L~~~glr~rV~IiadGGIrtG~DV~KALaLGAdaVgiGta~L~algc~~~r~c~~~~cp~giatq 1280 (1760)
.|.|...++.++.++.... .++||+||||+++.|++|||++|||+|++|..+--+. .+|--+...
T Consensus 197 vG~Pq~sAi~e~~~~~~~~----~~~iiADGGi~~~Gdi~KAla~GAd~VMlG~~lAg~~-----------Espg~~~~~ 261 (368)
T d2cu0a1 197 VGVPQITAVAMVADRAQEY----GLYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAGTK-----------EAPGKEVII 261 (368)
T ss_dssp CCCCHHHHHHHHHHHHHHH----TCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBT-----------TCCSCEEEE
T ss_pred CCCCHHHHHHHHHHHHHCC----CCEEEECCCCCCCCHHHEEEEECCCEEECCCHHCCCC-----------CCCCCEEEE
T ss_conf 2343478999999987524----9706845887867721135664132353053111422-----------357736715
Q ss_pred CHHHH------------------HHCCC--------CHH----------HHHHHHHHHHHHHHHHHHHCCCCCHHHHCCC
Q ss_conf 93567------------------42089--------899----------9999999999999999995299883332089
Q 000266 1281 DPVLR------------------EKFAG--------EPE----------HVINFFFMLAEELREIMSQLGFRTITEMIGR 1324 (1760)
Q Consensus 1281 dp~lr------------------~~~~g--------~~e----------~V~n~l~~l~~ELr~~Ma~lG~~si~elvgr 1324 (1760)
+.... +.+.+ -+| .|.+.+..+...||..|..+|+++|.||..+
T Consensus 262 ~g~~~k~~~Gm~S~~a~~~~~~~~~~~~~~~~~~~~~~EG~~~~v~~~G~~~~~l~~l~gglrs~m~y~G~~~l~e~~~~ 341 (368)
T d2cu0a1 262 NGRKYKQYRGMGSLGAMMKGGAERYYQGGYMKTRKFVPEGVEGVVPYRGTVSEVLYQLVGGLKAGMGYVGARNIRELKEK 341 (368)
T ss_dssp TTEEEEEEECTTSHHHHTC----------CCCCSCSSCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHH
T ss_pred CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHC
T ss_conf 99270135676642211357752223555333444378832885078888899999999999999876286509998509
Q ss_pred CCEEECCCC
Q ss_conf 741321300
Q 000266 1325 SDMLEVDKE 1333 (1760)
Q Consensus 1325 ~dll~~~~~ 1333 (1760)
..+...+..
T Consensus 342 ~~f~~vt~a 350 (368)
T d2cu0a1 342 GEFVIITHA 350 (368)
T ss_dssp CCEEECCHH
T ss_pred CEEEEECCC
T ss_conf 789999954
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=99.70 E-value=7.1e-17 Score=131.55 Aligned_cols=301 Identities=12% Similarity=0.056 Sum_probs=176.1
Q ss_pred CCCCCCCCCCCCCCCCCC--CCCCCCCCCCC-------------CCEEECCCCCCCCCHHHHHHHHHHHHHCCCCEECCC
Q ss_conf 754334334456789999--88877733334-------------644745798434749999999999997099632169
Q 000266 980 TCNLRGLLKFKEADVKIP--LEEVEPASEIV-------------KRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGE 1044 (1760)
Q Consensus 980 ~~~~r~ll~~~~~~~~i~--~~~Ve~~t~i~-------------~Pf~isaMS~Gsls~ea~~aLA~Aa~~~G~~s~sGe 1044 (1760)
.-++-++| +.+.+..++ -++|+..+++. -|++.++|-- .... .+|+++++.|+..+.--
T Consensus 8 ~ltFdDVl-LvP~~Sti~s~r~dVdl~~~l~~~~~~~~~~i~l~iPIIsAnMDT-Vt~~----~mA~~la~~GglgvihR 81 (362)
T d1pvna1 8 CHTFNEYL-LIPGLSTVDCIPSNVNLSTPLVKFQKGQQSEINLKIPLVSAIMQS-VSGE----KMAIALAREGGISFIFG 81 (362)
T ss_dssp BCCGGGEE-ECCCCBCTTCCGGGCBCCEECSCEETTSCCSCEESSSEEECSCTT-TCSH----HHHHHHHHTTCEEEECC
T ss_pred CCCCCCEE-EECCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEECCCCC-CCCH----HHHHHHHHCCCEEEEEE
T ss_conf 87855669-837987677771013602687740245566635698478468887-6899----99999998889779950
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHEEECCCCCCCCCHHHHCCC--HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 99992365767899984134312321448867795643471--2677766305788988987875421899988089886
Q 000266 1045 GGEQPSRMEPLSDGSMNPKRSAIKQVASGRFGVSSYYLTNA--DELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAG 1122 (1760)
Q Consensus 1045 Gg~~~e~~~~~~~g~~~~~~s~IkQvasgrFGvt~~~L~~a--~~ieIKiaQGAKpG~GG~Lpg~kv~~~IA~~r~~~~G 1122 (1760)
.+++|+.. ..++......+.+........ +.+++... .+
T Consensus 82 -~~~ie~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~---------------------------ag 122 (362)
T d1pvna1 82 -SQSIESQA-----------AMVHAVKNFRYLVGAGINTRDFRERVPALVE---------------------------AG 122 (362)
T ss_dssp -SSCHHHHH-----------HHHHHHHTCCCCCEEEECSSSHHHHHHHHHH---------------------------HT
T ss_pred -CCCHHHHH-----------HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH---------------------------CC
T ss_conf -59999999-----------9864233202322121101356777777764---------------------------18
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 33338999999999998999999999739-99926899811368899999999849979999239999899852221246
Q 000266 1123 VGLISPPPHHDIYSIEDLAQLIYDLKNAN-PGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNA 1201 (1760)
Q Consensus 1123 ~~lisP~~h~diySiEdL~qlI~~Lr~~~-p~~pI~VKlv~~~Gig~vA~~aakaGAD~IvIsG~~GGTGaa~~~si~~~ 1201 (1760)
...+.-...|. |+ +.....+.++|... +..+|++.-|.+ ...+..+.++|||+|.|.-..|.-+.++. ....
T Consensus 123 ~d~i~IDvAhG-~~-~~v~~~i~~ir~~~~~~~~IiAGNVaT---~e~~~~L~~aGaD~vkVGIG~Gs~CTTr~--~tGv 195 (362)
T d1pvna1 123 ADVLCIDSSDG-FS-EWQKITIGWIREKYGDKVKVGAGNIVD---GEGFRYLADAGADFIKIGIGGGSICITRE--QKGI 195 (362)
T ss_dssp CSEEEECCSCC-CB-HHHHHHHHHHHHHHGGGSCEEEEEECS---HHHHHHHHHHTCSEEEECSSCSTTBCHHH--HTCB
T ss_pred CEEEEECHHCC-CH-HHHHHHHHHHHHHHCCCEEEECCCCCC---HHHHHHHHHHCCCEEEECCCCCCCCCCHH--HHCC
T ss_conf 54775300001-01-578899999988653310342124467---88999999729757984430343434365--5503
Q ss_pred CCCHHHHHHHHHHHHHHCCC--CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCC---CCCCCCCCCCCC
Q ss_conf 88889999999999884799--9840999869867999999999919981123516799830100---113435989873
Q 000266 1202 GLPWELGLAETHQTLVANDL--RGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIM---MRKCHKNTCPVG 1276 (1760)
Q Consensus 1202 GlP~~~~L~ev~q~L~~~gl--r~rV~IiadGGIrtG~DV~KALaLGAdaVgiGta~L~algc~~---~r~c~~~~cp~g 1276 (1760)
|.|...++.++..+..+... ...++||+||||++..|++|||++|||+|++|..|--+..+-+ .+.-..-....|
T Consensus 196 G~Pq~sAv~e~a~~~~~~~~~~~~~v~iiaDGGi~~~gdi~KAla~GAd~VM~G~~lAg~~Espg~~~~~~g~~~k~~~G 275 (362)
T d1pvna1 196 GRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEESPTRKVTINGSVMKEYWG 275 (362)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSCEEEETTEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEEEECCCEEEHHHHHCCCCCCCCCEEECCCEEEEEEC
T ss_conf 77167799999999987533203687535332347466235788871340021115405565577310103513666622
Q ss_pred CCCCCHHHHHHC----------CCC-------HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEECCC
Q ss_conf 221393567420----------898-------99999999999999999999529988333208974132130
Q 000266 1277 IATQDPVLREKF----------AGE-------PEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVDK 1332 (1760)
Q Consensus 1277 iatqdp~lr~~~----------~g~-------~e~V~n~l~~l~~ELr~~Ma~lG~~si~elvgr~dll~~~~ 1332 (1760)
-+...-....++ ..| .-.|.+.+..+...||..|..+|+++|.||..++.+...+.
T Consensus 276 m~S~~a~~~~~~~~~~~~~~~~~eG~~~~v~~~g~~~~~~~~l~gglrs~~~y~G~~~l~~~~~~~~f~~~t~ 348 (362)
T d1pvna1 276 EGSSRARNWQRYDLGGKQKLSFEEGVDSYVPYAGKLKDNVEASLNKVKSTMCNCGALTIPQLQSKAKITLVSS 348 (362)
T ss_dssp TTSTTTCCGGGGCSSSCSSCSSCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHHCEEEEBCH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCEEEEECC
T ss_conf 5312133222124465210368997379962687778899999999999875327675999974889999882
|
| >d1ct9a2 d.153.1.1 (A:1-192) Asparagine synthetase B, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Class II glutamine amidotransferases domain: Asparagine synthetase B, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=6.1e-15 Score=117.96 Aligned_cols=133 Identities=20% Similarity=0.198 Sum_probs=97.7
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCE------EEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCH
Q ss_conf 189985214579999989898741------02004555580667999997302111012488478885216955899996
Q 000266 323 YMALIHSRFSTNTFPSWDRAQPMR------ILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSD 396 (1760)
Q Consensus 323 ~~ai~H~RySTNt~psw~~AQPfr------~laHNGEInt~~gN~n~m~are~~~~s~~~g~~~~~l~~~~pi~~~~~SD 396 (1760)
+++|+|+|+||.+.. ...||+. .++|||||.|+...++.+ ...+ .+.+.||
T Consensus 42 ~~~lgh~Rlsi~~~~--~~~~~~~~~~~~~~lv~NGeI~N~~~l~~~l-------------------~~~~--~~~s~sD 98 (192)
T d1ct9a2 42 NAILAHERLSIVDVN--AGAQPLYNQQKTHVLAVNGEIYNHQALRAEY-------------------GDRY--QFQTGSD 98 (192)
T ss_dssp SEEEEEEECCCSCTT--TCCSSEECTTSCEEEEEEEEETTHHHHHHHH-------------------TTTS--CCCSCCT
T ss_pred CEEEEEEEEEECCCC--CCCCCCCCCCCCEEEEECCCCCHHHHHHHHH-------------------HCCC--CCCCCCC
T ss_conf 999999877873656--7764221127962898657552267778887-------------------3275--6678872
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECC--CCEEEECCCCCCCC
Q ss_conf 7999999999999199999999870853311478899888999999771167799870899407--95699806989997
Q 000266 397 SGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTD--GRYLGATLDRNGLR 474 (1760)
Q Consensus 397 Se~ld~~le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e~rafyey~~~~mepwdGPa~iv~td--g~~iga~lDrnGLR 474 (1760)
||++.++++ ..|.+ .++.++|.+++++.| .+.+.++|||.|.|
T Consensus 99 tevll~~~~---~~g~~--------------------------------~~~~l~G~fa~~i~d~~~~~l~~aRD~~G~k 143 (192)
T d1ct9a2 99 CEVILALYQ---EKGPE--------------------------------FLDDLQGMFAFALYDSEKDAYLIGRDHLGII 143 (192)
T ss_dssp THHHHHHHH---HHTTT--------------------------------TGGGCCEEEEEEEEETTTTEEEEEECTTCCS
T ss_pred HHHHHHHHH---HCCHH--------------------------------HHHHHHHHEEEEEEECCCCEEEEEECCCCCE
T ss_conf 778787754---21266--------------------------------6646643007899715764069998466642
Q ss_pred CCEEEEEE-CCEEEEEECCCCCCCCCCCEEECCCCCCCCEEEEE
Q ss_conf 74289984-99999993365445899847771656899299998
Q 000266 475 PGRFYITH-SGRVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVD 517 (1760)
Q Consensus 475 Plr~~~t~-d~~~i~ASE~gaidi~~~~v~~kg~l~PGemi~vd 517 (1760)
|| ||... ++.+++|||..++.-...++. ++.||+++.++
T Consensus 144 PL-yy~~~~~g~~~fsSE~k~L~~~~~~i~---~~~pG~~l~~~ 183 (192)
T d1ct9a2 144 PL-YMGYDEHGQLYVASEMKALVPVCRTIK---EFPAGSYLWSQ 183 (192)
T ss_dssp CC-EEEECTTCCEEEESSGGGTTTTCSEEE---ECCTTEEEETT
T ss_pred EE-EEEEECCCEEEEEECHHHHHHHHCCEE---ECCCCCEEEEC
T ss_conf 47-999705838999857888787517708---81996199983
|
| >d1jgta2 d.153.1.1 (A:4-209) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Class II glutamine amidotransferases domain: beta-Lactam synthetase species: Streptomyces clavuligerus [TaxId: 1901]
Probab=99.53 E-value=6.6e-14 Score=110.73 Aligned_cols=138 Identities=16% Similarity=0.146 Sum_probs=102.1
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCEE----EECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCH
Q ss_conf 511899852145799999898987410----2004555580667999997302111012488478885216955899996
Q 000266 321 TSYMALIHSRFSTNTFPSWDRAQPMRI----LGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSD 396 (1760)
Q Consensus 321 ~s~~ai~H~RySTNt~psw~~AQPfr~----laHNGEInt~~gN~n~m~are~~~~s~~~g~~~~~l~~~~pi~~~~~SD 396 (1760)
....+++|.|..+.... .+||+.. ++|||||.|+...++. | ...+.+.||
T Consensus 42 ~~~~~l~h~~~~~~~~~---~~qp~~~~~~~~v~NGeIyN~~eL~~~-------------------l----g~~~~s~sD 95 (206)
T d1jgta2 42 SLAATLVHAPSVAPDRA---VARSLTGAPTTAVLAGEIYNRDELLSV-------------------L----PAGPAPEGD 95 (206)
T ss_dssp SCEEEEEECTTSCGGGG---EEEECSSSSEEEEEEEEESCHHHHHHT-------------------S----CSSCCCSSH
T ss_pred CCCEEECCCCCCCCCCC---CCCCCCCCCEEEEEEEEECCHHHHHHH-------------------H----CCCCCCCCC
T ss_conf 36511001443267865---576657999899999983299999998-------------------4----888889986
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEECCCCCCCCCC
Q ss_conf 79999999999991999999998708533114788998889999997711677998708994079569980698999774
Q 000266 397 SGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPG 476 (1760)
Q Consensus 397 Se~ld~~le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e~rafyey~~~~mepwdGPa~iv~tdg~~iga~lDrnGLRPl 476 (1760)
||++.++++ +.|. ..++.++|.|++++.|.+.+.++|||.|.|||
T Consensus 96 tEvil~l~~---~~G~--------------------------------~~l~~l~G~Fa~vi~d~~~l~laRD~~G~KPL 140 (206)
T d1jgta2 96 AELVLRLLE---RYDL--------------------------------HAFRLVNGRFATVVRTGDRVLLATDHAGSVPL 140 (206)
T ss_dssp HHHHHHHHH---HHGG--------------------------------GGGGTCCEEEEEEEEETTEEEEEECTTCCSCC
T ss_pred HHHHHHHHH---HHCH--------------------------------HHHHHHHHHHHEEEEECCEEEEEEECCCCEEE
T ss_conf 589878765---4089--------------------------------99999973112433404348999702122027
Q ss_pred EEEEEECCEEEEEECCCCCCCC----------------CCCEEECCCCCCCCEEEEECCCCEE
Q ss_conf 2899849999999336544589----------------9847771656899299998499778
Q 000266 477 RFYITHSGRVIMASEVGVVDIP----------------PEDVLRKGRLNPGMMLLVDFEKRIV 523 (1760)
Q Consensus 477 r~~~t~d~~~i~ASE~gaidi~----------------~~~v~~kg~l~PGemi~vd~~~g~i 523 (1760)
||...++.+++|||..++-.. -..|. +|.||.++.+|.+++.+
T Consensus 141 -yy~~~~~~~~fASe~kaLl~~~~~~~~~~~~~~~~T~~kgI~---~lppG~~l~~~~~~~~~ 199 (206)
T d1jgta2 141 -YTCVAPGEVRASTEAKALAAHRDPKGFPLADARRVAGLTGVY---QVPAGAVMDIDLGSGTA 199 (206)
T ss_dssp -EEEEETTEEEEESCHHHHHTC--CCCCCCTTSEECSSCSSCE---ECCTTEEEEEETTTTEE
T ss_pred -EEEECCCCEEECHHHHHHHHCCCHHHHHHHCCCCCCHHHCEE---EECCCCEEEEECCCCCE
T ss_conf -999819905752256898848743544321245764530936---98979489998999928
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Probab=99.41 E-value=2.6e-12 Score=99.50 Aligned_cols=154 Identities=22% Similarity=0.226 Sum_probs=106.3
Q ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEECCCCCH---HHHHHHHHHCCCCEEEEECCCCCC-----CCCCCCC-----C-CC
Q ss_conf 99998999999999739999268998113688---999999998499799992399998-----9985222-----1-24
Q 000266 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEAGV---GVIASGVVKGHADHVLISGHDGGT-----GASRWTG-----I-KN 1200 (1760)
Q Consensus 1135 ySiEdL~qlI~~Lr~~~p~~pI~VKlv~~~Gi---g~vA~~aakaGAD~IvIsG~~GGT-----Gaa~~~s-----i-~~ 1200 (1760)
...+.+.+.+.+++... +.|+.+|+.+.... ...+..+.+.++++|..-+.-... ....... . -.
T Consensus 141 ~~~~~~~~~~~~v~~~~-~~pv~vKl~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~ 219 (311)
T d1juba_ 141 YDFEATEKLLKEVFTFF-TKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGI 219 (311)
T ss_dssp GCHHHHHHHHHHHTTTC-CSCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEE
T ss_pred CCHHHHHHHHHHHHCCC-CCCEEECCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 23899999998753024-56423124443025678889999875154367413444552232234444334564445776
Q ss_pred CCCC-HHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 6888-899999999998847999840999869867999999999919981123516799830100113435989873221
Q 000266 1201 AGLP-WELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIAT 1279 (1760)
Q Consensus 1201 ~GlP-~~~~L~ev~q~L~~~glr~rV~IiadGGIrtG~DV~KALaLGAdaVgiGta~L~algc~~~r~c~~~~cp~giat 1279 (1760)
.|.| ...+|..+++.... ++.+++||++|||+|+.|+++++++||++|+++|++++-
T Consensus 220 sg~~l~~~al~~i~~i~~~--~~~~~~Iig~GGI~s~~Da~~~i~aGA~~Vql~tal~~~-------------------- 277 (311)
T d1juba_ 220 GGAYIKPTALANVRAFYTR--LKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKE-------------------- 277 (311)
T ss_dssp ESGGGHHHHHHHHHHHHTT--SCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHH--------------------
T ss_pred CCCCCCCHHHHHHHHHHHH--CCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEHHHHHC--------------------
T ss_conf 5643570679999999974--189736885178389999999998499903651756740--------------------
Q ss_pred CCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCC
Q ss_conf 39356742089899999999999999999999529988333208974
Q 000266 1280 QDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSD 1326 (1760)
Q Consensus 1280 qdp~lr~~~~g~~e~V~n~l~~l~~ELr~~Ma~lG~~si~elvgr~d 1326 (1760)
+|. ++..+.+||+.+|...|+++++|++|+..
T Consensus 278 -----------Gp~----~i~~i~~~L~~~m~~~G~~si~e~~G~~~ 309 (311)
T d1juba_ 278 -----------GPA----IFDRIIKELEEIMNQKGYQSIADFHGKLK 309 (311)
T ss_dssp -----------CTH----HHHHHHHHHHHHHHHHTCCSGGGTTTCCB
T ss_pred -----------CHH----HHHHHHHHHHHHHHHCCCCCHHHHCCCCC
T ss_conf -----------919----99999999999999849999999648200
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.40 E-value=4.6e-12 Score=97.80 Aligned_cols=131 Identities=18% Similarity=0.202 Sum_probs=95.4
Q ss_pred CCCEEEEECCCCC---HHHHHHHHHHCCCCEEEEECCCCC----------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 9926899811368---899999999849979999239999----------899852221246888899999999998847
Q 000266 1153 GARISVKLVSEAG---VGVIASGVVKGHADHVLISGHDGG----------TGASRWTGIKNAGLPWELGLAETHQTLVAN 1219 (1760)
Q Consensus 1153 ~~pI~VKlv~~~G---ig~vA~~aakaGAD~IvIsG~~GG----------TGaa~~~si~~~GlP~~~~L~ev~q~L~~~ 1219 (1760)
+.||.||+.+... +..++..+.++|+|+|++.+.-.+ +|+-+...++ ..++.-+++....
T Consensus 266 ~ppi~vKlsPd~~~~~i~~i~~~~~~~g~dgii~~Nt~~~~~~~~~~~~~~GGlSG~~l~------~~al~~v~~v~~~- 338 (409)
T d1tv5a1 266 KPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLK------DISTKFICEMYNY- 338 (409)
T ss_dssp CCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHH------HHHHHHHHHHHHH-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHH------HHHHHHHHHHHHH-
T ss_conf 786599858998702468899998860654101132222555533423467764310178------8999999999997-
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHH
Q ss_conf 99984099986986799999999991998112351679983010011343598987322139356742089899999999
Q 000266 1220 DLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFF 1299 (1760)
Q Consensus 1220 glr~rV~IiadGGIrtG~DV~KALaLGAdaVgiGta~L~algc~~~r~c~~~~cp~giatqdp~lr~~~~g~~e~V~n~l 1299 (1760)
+..+++||+.|||.++.|+++.+.+||++|+++|++++- +|. .+
T Consensus 339 -~~~~ipIIGvGGI~s~~Da~e~i~AGAs~VQv~T~li~~---------------------Gp~--------------~v 382 (409)
T d1tv5a1 339 -TNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFN---------------------GMK--------------SA 382 (409)
T ss_dssp -TTTCSCEEEESSCCSHHHHHHHHHTTEEEEEESHHHHHH---------------------GGG--------------HH
T ss_pred -CCCCCEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHC---------------------CHH--------------HH
T ss_conf -089960999899799999999998499787630678711---------------------928--------------99
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHCCCCC
Q ss_conf 999999999999529988333208974
Q 000266 1300 FMLAEELREIMSQLGFRTITEMIGRSD 1326 (1760)
Q Consensus 1300 ~~l~~ELr~~Ma~lG~~si~elvgr~d 1326 (1760)
..+.+||..+|...|+.+++|++|..+
T Consensus 383 ~~I~~~L~~~l~~~g~~~i~e~iG~~h 409 (409)
T d1tv5a1 383 VQIKRELNHLLYQRGYYNLKEAIGRKH 409 (409)
T ss_dssp HHHHHHHHHHHHHHTCSSSGGGTTTTC
T ss_pred HHHHHHHHHHHHHCCCCCHHHHCCCCC
T ss_conf 999999999999829998999539889
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=3.2e-11 Score=91.92 Aligned_cols=136 Identities=21% Similarity=0.225 Sum_probs=93.8
Q ss_pred CCCEEEEECCCCC---HHHHHHHHHHCCCCEEEEECCCCCC----CC-CCCCCCCCCCCC-HHHHHHHHHHHHHHCCCCC
Q ss_conf 9926899811368---8999999998499799992399998----99-852221246888-8999999999988479998
Q 000266 1153 GARISVKLVSEAG---VGVIASGVVKGHADHVLISGHDGGT----GA-SRWTGIKNAGLP-WELGLAETHQTLVANDLRG 1223 (1760)
Q Consensus 1153 ~~pI~VKlv~~~G---ig~vA~~aakaGAD~IvIsG~~GGT----Ga-a~~~si~~~GlP-~~~~L~ev~q~L~~~glr~ 1223 (1760)
+.|+.+|+.+... +..++..+.++|+|+|++.+.--+- .. .+...---.|.+ ....+.-+++.... +..
T Consensus 220 ~~Pv~vKlsP~~~~~~i~~~a~~~~~~g~~gi~~~nt~~~~~~~~~~~~~~~~gg~sG~~~~~i~l~~v~~v~~~--~~~ 297 (367)
T d1d3ga_ 220 RPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYAL--TQG 297 (367)
T ss_dssp CCEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHH--TTT
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH--HCC
T ss_conf 776301247641000134467888765431021133322344543442112443211211102308899999997--389
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 40999869867999999999919981123516799830100113435989873221393567420898999999999999
Q 000266 1224 RTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLA 1303 (1760)
Q Consensus 1224 rV~IiadGGIrtG~DV~KALaLGAdaVgiGta~L~algc~~~r~c~~~~cp~giatqdp~lr~~~~g~~e~V~n~l~~l~ 1303 (1760)
+++|++.|||.++.|+++.+++||++|+++|++++. +| .++..+.
T Consensus 298 ~ipIig~GGI~s~~Da~e~i~aGAs~VQi~Ta~~~~---------------------Gp--------------~ii~~I~ 342 (367)
T d1d3ga_ 298 RVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFW---------------------GP--------------PVVGKVK 342 (367)
T ss_dssp CSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHH---------------------CT--------------HHHHHHH
T ss_pred CCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHC---------------------CC--------------HHHHHHH
T ss_conf 951999889799999999998399788741778823---------------------90--------------7999999
Q ss_pred HHHHHHHHHCCCCCHHHHCCCC
Q ss_conf 9999999952998833320897
Q 000266 1304 EELREIMSQLGFRTITEMIGRS 1325 (1760)
Q Consensus 1304 ~ELr~~Ma~lG~~si~elvgr~ 1325 (1760)
+||+.+|...|+.+++|++|.+
T Consensus 343 ~~L~~~l~~~G~~si~dl~G~a 364 (367)
T d1d3ga_ 343 RELEALLKEQGFGGVTDAIGAD 364 (367)
T ss_dssp HHHHHHHHHTTCSSHHHHTTGG
T ss_pred HHHHHHHHHCCCCCHHHHCCHH
T ss_conf 9999999984999899962802
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.27 E-value=2.1e-10 Score=86.19 Aligned_cols=142 Identities=15% Similarity=0.133 Sum_probs=98.0
Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEECCC-CCHHHHHHHHHHCCCCEEEEECCCCCCCCC-----CCCCC------C---C
Q ss_conf 9998999999999739999268998113-688999999998499799992399998998-----52221------2---4
Q 000266 1136 SIEDLAQLIYDLKNANPGARISVKLVSE-AGVGVIASGVVKGHADHVLISGHDGGTGAS-----RWTGI------K---N 1200 (1760)
Q Consensus 1136 SiEdL~qlI~~Lr~~~p~~pI~VKlv~~-~Gig~vA~~aakaGAD~IvIsG~~GGTGaa-----~~~si------~---~ 1200 (1760)
..+.+.+++.++|+.. +.||+||+.+. .....++..+.++|+|+|++.+.-++.... +...+ . .
T Consensus 155 ~~~~~~~i~~~v~~~~-~~pv~vKl~~~~~~~~~i~~~~~~~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~ 233 (312)
T d1gtea2 155 DPELVRNICRWVRQAV-QIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGV 233 (312)
T ss_dssp CHHHHHHHHHHHHHHC-SSCEEEEECSCSSCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEE
T ss_pred HHHHHHHHHHHHHHCC-CCCEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 6999999999875335-886563246430048999999987355614999613452110245540244442012245654
Q ss_pred CCCC-HHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 6888-899999999998847999840999869867999999999919981123516799830100113435989873221
Q 000266 1201 AGLP-WELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIAT 1279 (1760)
Q Consensus 1201 ~GlP-~~~~L~ev~q~L~~~glr~rV~IiadGGIrtG~DV~KALaLGAdaVgiGta~L~algc~~~r~c~~~~cp~giat 1279 (1760)
.|.+ ...+|.-+.+.... + .+++||+.|||+++.|+++++++||++|+++|++++-
T Consensus 234 sG~~i~~~al~~v~~~~~~--~-~~ipIi~~GGI~~~~d~~~~l~aGA~~Vqv~ta~~~~-------------------- 290 (312)
T d1gtea2 234 SGTAIRPIALRAVTTIARA--L-PGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQ-------------------- 290 (312)
T ss_dssp ESGGGHHHHHHHHHHHHHH--S-TTCCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTS--------------------
T ss_pred CCCCCCHHHHHHHHHHHHH--C-CCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCC--------------------
T ss_conf 6757503459999999997--4-8983999868799999999998399904777866615--------------------
Q ss_pred CCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 3935674208989999999999999999999952998
Q 000266 1280 QDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFR 1316 (1760)
Q Consensus 1280 qdp~lr~~~~g~~e~V~n~l~~l~~ELr~~Ma~lG~~ 1316 (1760)
+ ..++..+.++|+.+|...|+.
T Consensus 291 -----------G----~~~i~~i~~~L~~~m~~~g~~ 312 (312)
T d1gtea2 291 -----------D----FTVIQDYCTGLKALLYLKSIE 312 (312)
T ss_dssp -----------C----TTHHHHHHHHHHHHHHHTTCG
T ss_pred -----------C----HHHHHHHHHHHHHHHHHCCCC
T ss_conf -----------9----199999999999999972999
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=99.23 E-value=1.4e-10 Score=87.45 Aligned_cols=148 Identities=21% Similarity=0.185 Sum_probs=103.1
Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEECCCC-CHHHHHHHHHHCCCCEEEEECCCCCCCCC-----CCCC---CCCCCCC-H
Q ss_conf 99989999999997399992689981136-88999999998499799992399998998-----5222---1246888-8
Q 000266 1136 SIEDLAQLIYDLKNANPGARISVKLVSEA-GVGVIASGVVKGHADHVLISGHDGGTGAS-----RWTG---IKNAGLP-W 1205 (1760)
Q Consensus 1136 SiEdL~qlI~~Lr~~~p~~pI~VKlv~~~-Gig~vA~~aakaGAD~IvIsG~~GGTGaa-----~~~s---i~~~GlP-~ 1205 (1760)
..+.+...+..++... +.|+.+|+.+.. ....++..+.++++|++++.+..+..... +... -...|.+ .
T Consensus 148 ~~~~~~~~~~~v~~~~-~~p~~vkl~~~~~~~~~~a~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~sG~~i~ 226 (311)
T d1ep3a_ 148 DPEVAAALVKACKAVS-KVPLYVKLSPNVTDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIK 226 (311)
T ss_dssp CHHHHHHHHHHHHHHC-SSCEEEEECSCSSCSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGH
T ss_pred CHHHHHHHHHHHHHCC-CCCEEEEECCCCCCHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9899999999998512-787344202210205889999998652036888521433101025664325667787887564
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 99999999998847999840999869867999999999919981123516799830100113435989873221393567
Q 000266 1206 ELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLR 1285 (1760)
Q Consensus 1206 ~~~L~ev~q~L~~~glr~rV~IiadGGIrtG~DV~KALaLGAdaVgiGta~L~algc~~~r~c~~~~cp~giatqdp~lr 1285 (1760)
...+..+++.... .+++|++.|||+++.|+.+++++||++|++||+++. +|.
T Consensus 227 ~~~l~~i~~i~~~----~~ipIig~GGI~s~~Da~~~i~~GAd~V~ig~~~~~----------------------~P~-- 278 (311)
T d1ep3a_ 227 PVALKLIHQVAQD----VDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFA----------------------DPF-- 278 (311)
T ss_dssp HHHHHHHHHHHTT----CSSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHH----------------------CTT--
T ss_pred CHHHHHHHHHHHH----CCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC----------------------CCH--
T ss_conf 0257899998641----464489708969999999999809999996388773----------------------982--
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCC
Q ss_conf 420898999999999999999999995299883332089
Q 000266 1286 EKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGR 1324 (1760)
Q Consensus 1286 ~~~~g~~e~V~n~l~~l~~ELr~~Ma~lG~~si~elvgr 1324 (1760)
++..+.+||..+|...|+.+++|++|.
T Consensus 279 ------------i~~~I~~~L~~~m~~~g~~si~e~~g~ 305 (311)
T d1ep3a_ 279 ------------VCPKIIDKLPELMDQYRIESLESLIQE 305 (311)
T ss_dssp ------------HHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf ------------999999999999998399889999998
|
| >d1ofda1 b.80.4.1 (A:1240-1507) Alpha subunit of glutamate synthase, C-terminal domain {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Alpha subunit of glutamate synthase, C-terminal domain family: Alpha subunit of glutamate synthase, C-terminal domain domain: Alpha subunit of glutamate synthase, C-terminal domain species: Synechocystis sp. [TaxId: 1143]
Probab=99.17 E-value=1.2e-10 Score=87.81 Aligned_cols=104 Identities=27% Similarity=0.372 Sum_probs=53.7
Q ss_pred EEEEEECCCCCHHHHCCCCCCEEEEEECC------------CCHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHCCC
Q ss_conf 99999467420221028899689999147------------761200899966999399999999986520103653037
Q 000266 1429 IHIKLTGSAGQSVGAFLCPGILLELEGDS------------NDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYGA 1496 (1760)
Q Consensus 1429 i~i~~~G~aGq~~Gaf~~~G~~i~v~G~a------------~dyvGkgmsGG~IvV~g~~~~~f~~~~~~i~Gn~~~yGa 1496 (1760)
++++++|.|.+++|-.| .|++|.|.+.. ++-++-||.||++.|.|.+ |.-++.-+
T Consensus 82 ~~l~l~G~anD~vgkg~-~gG~i~i~~~~~~~~~~~~n~i~Gn~~~yGatgG~~~v~G~a------------GeRf~vrn 148 (268)
T d1ofda1 82 MTLHLQGEANDYVGKGM-NGGEIVIVPHPQASFAPEDNVIIGNTCLYGATGGNLYANGRA------------GERFAVRN 148 (268)
T ss_dssp EEEEEEEEECSCTTTTC-CSSEEEEECCTTCCSCGGGSBCSCSSTTTTCCSCEEEESSBC------------CSSTTTTC
T ss_pred CEEEEEEECCCCCCCCC-CCCCEEEECCCCCCCCCCCCCEECCEEEECCCCCEEEEECCC------------HHHHHHHH
T ss_conf 36999970276625565-546458976844565434572132212101355179973231------------05788875
Q ss_pred CCCEEEEECCCCCCCCCCCCCCEEEECC-CCCCCCCCCCCCEEEEECCCCC
Q ss_conf 5427999356654200015885999927-7762012355847999388787
Q 000266 1497 TSGEAYFNGMAAERFCVRNSGARAVVEG-VGDHGCEYMTGGTVVVLGKTGR 1546 (1760)
Q Consensus 1497 tgG~i~v~G~aG~r~gvr~sG~~~VV~G-~Gd~~~eyMtgG~ivVlG~~G~ 1546 (1760)
.|+.++|.| +|+++|.-|.||++||=| +|...|.-|+||.+-|+.+.+.
T Consensus 149 sga~~VveG-~gdh~~EYMtgG~vvvLG~~G~nfgaGMsGG~AYv~d~~~~ 198 (268)
T d1ofda1 149 SVGKAVIEG-AGDHCCEYMTGGVIVVLGPVGRNVGAGMTGGLAYFLDEVGD 198 (268)
T ss_dssp SSCEEEESC-CCSSTTTTCEEEEEEECSCCCSSBTTTCCEEEEEEECSSSC
T ss_pred HCCEEEEEC-CCCEEEEEECCCEEEEEHHHHHHHHHHHCCCEEEEECHHHH
T ss_conf 054677614-57622355517478872102256778650846897032556
|
| >d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.13 E-value=9.5e-10 Score=81.55 Aligned_cols=146 Identities=20% Similarity=0.238 Sum_probs=97.9
Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHH---HHHHHC-CCCEEEEECCC------------------CCCCCC
Q ss_conf 99989999999997399992689981136889999---999984-99799992399------------------998998
Q 000266 1136 SIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIA---SGVVKG-HADHVLISGHD------------------GGTGAS 1193 (1760)
Q Consensus 1136 SiEdL~qlI~~Lr~~~p~~pI~VKlv~~~Gig~vA---~~aaka-GAD~IvIsG~~------------------GGTGaa 1193 (1760)
..+.+.+.+.++|+.. +.|+.+|+.+........ ..+.++ ++++|+.-+.- .+.|+.
T Consensus 142 ~~~~~~~i~~~v~~~~-~~pi~vKl~p~~~~~~~~~~~~~~~~~~~~~~i~~~nt~~~~~~~~~~~~~~~~~~~~~~GGl 220 (312)
T d2b4ga1 142 DFDTTRTYLQKVSEAY-GLPFGVKMPPYFDIAHFDMAAAVLNDFPLVKFITCVNSIGNGLVIDPANETVVIKPKQGFGGL 220 (312)
T ss_dssp CHHHHHHHHHHHHHHH-CSCEEEEECCCCCHHHHHHHHHHHTTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEE
T ss_pred CHHHHHHHHHHHHCCC-CCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 4899999999863025-564100124334366799999998752123445430344565201025777533464334576
Q ss_pred CCCCCCCCCCC-HHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCC
Q ss_conf 52221246888-89999999999884799984099986986799999999991998112351679983010011343598
Q 000266 1194 RWTGIKNAGLP-WELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNT 1272 (1760)
Q Consensus 1194 ~~~si~~~GlP-~~~~L~ev~q~L~~~glr~rV~IiadGGIrtG~DV~KALaLGAdaVgiGta~L~algc~~~r~c~~~~ 1272 (1760)
.|.| -..+|..+++..... . ..+|++.|||.++.|+++.+++||+.|+++|++++-
T Consensus 221 -------SG~~l~~~al~~v~~~~~~~--~-~~~Iig~GGI~s~~Da~e~i~aGAs~Vqv~Tal~~~------------- 277 (312)
T d2b4ga1 221 -------GGKYVLPTALANVNAFFRRC--P-DKLVFGCGGVYSGEEAFLHILAGASMVQVGTALHDE------------- 277 (312)
T ss_dssp -------EEGGGHHHHHHHHHHHHHHC--T-TSEEEEESSCCSHHHHHHHHHHTEEEEEESHHHHHH-------------
T ss_pred -------CCCCCCCHHHHHHHHHHHHC--C-CCCEEECCCCCCHHHHHHHHHCCCCHHEEEHHHHHC-------------
T ss_conf -------54443402339999999975--8-870664578478999999998499850441556740-------------
Q ss_pred CCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCE
Q ss_conf 9873221393567420898999999999999999999995299883332089741
Q 000266 1273 CPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDM 1327 (1760)
Q Consensus 1273 cp~giatqdp~lr~~~~g~~e~V~n~l~~l~~ELr~~Ma~lG~~si~elvgr~dl 1327 (1760)
|| .++..+.+||..+|...|+++++|++|+..-
T Consensus 278 ------------------Gp----~~i~~i~~~L~~~l~~~G~~si~e~~G~~~~ 310 (312)
T d2b4ga1 278 ------------------GP----IIFARLNKELQEIMTNKGYKTLDEFRGRVKT 310 (312)
T ss_dssp ------------------CT----THHHHHHHHHHHHHHHHTCCSGGGTTTCCBC
T ss_pred ------------------CC----HHHHHHHHHHHHHHHHCCCCCHHHHCCEEEC
T ss_conf ------------------91----8999999999999998399989997682140
|
| >d1gtea1 a.1.2.2 (A:2-183) Dihydropyrimidine dehydrogenase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Globin-like superfamily: alpha-helical ferredoxin family: Dihydropyrimidine dehydrogenase, N-terminal domain domain: Dihydropyrimidine dehydrogenase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.92 E-value=5.9e-11 Score=90.04 Aligned_cols=59 Identities=14% Similarity=0.234 Sum_probs=52.1
Q ss_pred CCCCCCCCCCCCCCC-CCCHHHHHCCCHHHC-CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 386567433346889-899787813940102-57899467999974221899986557999999
Q 000266 1699 VKHRGFIAYEREGVQ-YRDPNIRMNDWKEVM-EESKPGPLLKTQSARCMDCGTPFCHQVCIAPF 1760 (1760)
Q Consensus 1699 ~k~~gF~~~~R~~~~-~r~~~~R~~df~Ev~-~~l~~~~~a~~QAaRCMdCG~PfC~~~~gCPl 1760 (1760)
.+..+++.|+|.... +++++.|.+||+||+ ..+ ++.+|..||+|||+|++|||+. +||+
T Consensus 32 ~~~~~~~~~~r~~~~~~~~~~~~~~~f~ei~~~~~-~~~~a~~EA~RCl~C~~ppC~~--aCP~ 92 (182)
T d1gtea1 32 AKKLDKKHWKRNPDKNCFHCEKLENNFDDIKHTTL-GERGALREAMRCLKCADAPCQK--SCPT 92 (182)
T ss_dssp HHHHHHHHHCCSCCTTCCCCCCCTTCCCCCCSSCC-CHHHHHHHHHHSCCCTTCHHHH--TSTT
T ss_pred HHHHHHHHCCCCCCCCCCCHHHHHCCHHHCCCCCC-CHHHHHHHHHHHHCCCCCCCCC--CCCC
T ss_conf 65565441002788888888887269533058898-9999999999861799987677--8999
|
| >d1ea0a1 b.80.4.1 (A:1203-1472) Alpha subunit of glutamate synthase, C-terminal domain {Azospirillum brasilense [TaxId: 192]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Alpha subunit of glutamate synthase, C-terminal domain family: Alpha subunit of glutamate synthase, C-terminal domain domain: Alpha subunit of glutamate synthase, C-terminal domain species: Azospirillum brasilense [TaxId: 192]
Probab=98.79 E-value=8.5e-09 Score=74.88 Aligned_cols=106 Identities=26% Similarity=0.359 Sum_probs=71.0
Q ss_pred CCEEEEEECCCCCHHHHCCCCCCEEEEEECC------------CCHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHC
Q ss_conf 2299999467420221028899689999147------------7612008999669993999999999865201036530
Q 000266 1427 DTIHIKLTGSAGQSVGAFLCPGILLELEGDS------------NDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALY 1494 (1760)
Q Consensus 1427 ~~i~i~~~G~aGq~~Gaf~~~G~~i~v~G~a------------~dyvGkgmsGG~IvV~g~~~~~f~~~~~~i~Gn~~~y 1494 (1760)
.-++++++|.|-+++|-.| .|++|.|.... ++-++-|++||++.|.|.++..| +-
T Consensus 80 ~g~~l~l~G~anDyvGkg~-~gg~i~v~~~~~~~~~~~~~~i~Gn~~~yGAt~G~~~~~G~ageRf------------~V 146 (270)
T d1ea0a1 80 QGIKLEVMGDANDYVGKGL-SGGTIVVRPTTSSPLETNKNTIIGNTVLYGATAGKLFAAGQAGERF------------AV 146 (270)
T ss_dssp TTEEEEEEEEECSCTTTTC-EEEEEEEECCTTCCCCGGGSEEECSSTTTTCCEEEEEESSEECTTT------------TT
T ss_pred CCCEEEEEECCCCHHCCCC-CCCEEEEECCCCCCCCCCCCCEECCEEEEECCCCEEEECCCCCCEE------------EE
T ss_conf 7608999834752001355-6653899878556765434611032478614675289827754145------------32
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCEEEECC-CCCCCCCCCCCCEEEEECCCCC
Q ss_conf 375427999356654200015885999927-7762012355847999388787
Q 000266 1495 GATSGEAYFNGMAAERFCVRNSGARAVVEG-VGDHGCEYMTGGTVVVLGKTGR 1546 (1760)
Q Consensus 1495 GatgG~i~v~G~aG~r~gvr~sG~~~VV~G-~Gd~~~eyMtgG~ivVlG~~G~ 1546 (1760)
=..|..++|.| +|+++|.-|.||++||=| +|...|.-|+||.+.|+...+.
T Consensus 147 RnSGa~aVveG-~Gdh~cEYMTgG~vvvLG~~G~nfgAGMsGGiAYvyd~~~~ 198 (270)
T d1ea0a1 147 RNSGATVVVEG-CGSNGCEYMTGGTAVILGRVGDNFAAGMTGGMAYVYDLDDS 198 (270)
T ss_dssp TCEEEEEEESC-BCSSTTTTCCEEEECCSSCBCSSBTTTCCSSEECCCCTTSC
T ss_pred CCCCCEEEECC-CCCEEEEEECCCEEEEEECCCCCCCCCCCCCEEEEECCHHH
T ss_conf 11675787436-41211224427548996036753003410537999622345
|
| >d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Class II glutamine amidotransferases domain: beta-Lactam synthetase species: Pectobacterium carotovorum [TaxId: 554]
Probab=98.78 E-value=1.3e-08 Score=73.63 Aligned_cols=158 Identities=13% Similarity=0.040 Sum_probs=95.9
Q ss_pred CEEEEECCCCHHCHHHHHCCCCCCCCCCCCEEEEEECCCCCCCC--CCCCCCCCE----EEECCCCCCCHHHHHHHHHHH
Q ss_conf 80899821151101001001479988651189985214579999--989898741----020045555806679999973
Q 000266 294 RTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFP--SWDRAQPMR----ILGHNGEINTLRGNVNWMKAR 367 (1760)
Q Consensus 294 ~tiVyKG~g~~~qv~~~y~~DL~d~~~~s~~ai~H~RySTNt~p--sw~~AQPfr----~laHNGEInt~~gN~n~m~ar 367 (1760)
..++|+|--.-... .. .. +...|.|-|..... +-.-.|||. .++-||||-|++..|..+
T Consensus 4 ~c~~~rgpd~~~~~---~~-----~~----~~~~~~rLsi~~l~~~~n~~~~~~~~~ry~~~~nGEIYN~~~lr~~l--- 68 (204)
T d1q15a2 4 FCVVYKGSDTDINN---IQ-----RD----FDGKGEALSNGYLFIEQNGHYQKCEMERGTAYLIGSLYNRTFLIGLA--- 68 (204)
T ss_dssp EEEEETCCHHHHHH---HH-----TT----SCEEEEEETTEEEEEETTCCEEEEECSSSEEEEEECCSCHHHHHHHH---
T ss_pred EEEEEECCCCCCHH---HH-----HH----HCCHHHHHCCHHHHHCCCCCCCCCCCCCEEEEEEEEECCHHHHHHHH---
T ss_conf 36898389731001---45-----56----40165540310001014699886668969999999983899999999---
Q ss_pred HCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 02111012488478885216955899996799999999999919999999987085331147889988899999977116
Q 000266 368 EGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALM 447 (1760)
Q Consensus 368 e~~~~s~~~g~~~~~l~~~~pi~~~~~SDSe~ld~~le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e~rafyey~~~~m 447 (1760)
.+.+ .-+.+.||||++.++++. .|. + ..
T Consensus 69 ----------------~~~~-~~~~~~sDtEvll~~~~~---~G~---~-----------------------------~l 96 (204)
T d1q15a2 69 ----------------GVWE-GEAYLANDAELLALLFTR---LGA---N-----------------------------AL 96 (204)
T ss_dssp ----------------TTTC-GGGGGCCHHHHHHHHHHH---HCG---G-----------------------------GG
T ss_pred ----------------HHCC-CCCCCCCHHHHHHHHHHH---HHH---H-----------------------------HH
T ss_conf ----------------8769-974688869999999999---778---8-----------------------------88
Q ss_pred CCCCCCCEEEECC--CCEEEECCCCCCCCCCEEEEEECCEEEEEECCCCC--------CCC-------------CCCE--
Q ss_conf 7799870899407--95699806989997742899849999999336544--------589-------------9847--
Q 000266 448 EPWDGPALISFTD--GRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVV--------DIP-------------PEDV-- 502 (1760)
Q Consensus 448 epwdGPa~iv~td--g~~iga~lDrnGLRPlr~~~t~d~~~i~ASE~gai--------di~-------------~~~v-- 502 (1760)
+.++|-+++++-| ++.+. +|||.|.+|| ||...++.+++|||...+ ++. +..+
T Consensus 97 ~~l~G~Faf~i~~~~~~l~l-~RD~~G~KPL-yY~~~~~~~ifSS~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~T~fk 174 (204)
T d1q15a2 97 ALAEGDFCFFIDEPNGELTV-ITESRGFSPV-HVVQGKKAWMTNSLKLVTAAEGEGALWFEEEALVCQSLMRADTYTPVK 174 (204)
T ss_dssp GGCCSSEEEEEECTTSCEEE-EECSSSSSCC-EEEESSSEEEESCHHHHHHHHCTTSSCBCCHHHHTTCSCCCTTCCSBT
T ss_pred HHHCCCEEEEEECCCCEEEE-EECCCCCCCE-EEEECCCEEEEEECHHHHHHCCCCCCCCCHHHHHHHHEECCCCCCCCC
T ss_conf 86077468998627863999-9878876556-999659999998263456516678867476676686512179986647
Q ss_pred -EECCCCCCCCEEEEECCCCE
Q ss_conf -77165689929999849977
Q 000266 503 -LRKGRLNPGMMLLVDFEKRI 522 (1760)
Q Consensus 503 -~~kg~l~PGemi~vd~~~g~ 522 (1760)
+ .+|.||.++.++.+..+
T Consensus 175 ~I--~kl~PG~~~~~~~~~~~ 193 (204)
T d1q15a2 175 NA--QRLKPGAVHVLTHDSEG 193 (204)
T ss_dssp TE--EECCSSEEEEEEECTTC
T ss_pred CE--EEECCCCEEEEEECCCE
T ss_conf 93--99899828999978981
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=98.74 E-value=5.5e-08 Score=69.21 Aligned_cols=105 Identities=13% Similarity=-0.066 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 98999999999739999268998113688999999998499799992399998998522212468888999999999988
Q 000266 1138 EDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLV 1217 (1760)
Q Consensus 1138 EdL~qlI~~Lr~~~p~~pI~VKlv~~~Gig~vA~~aakaGAD~IvIsG~~GGTGaa~~~si~~~GlP~~~~L~ev~q~L~ 1217 (1760)
+++.+.+...+..++. .+.+..+.+ ...+..+.+.|+|+|.+.++++++..... ....+....+.++.+.
T Consensus 104 ~~~~~~~~~~~~~~~~-~~v~~~~~t---~~~a~~~~~~g~d~i~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~-- 173 (222)
T d1y0ea_ 104 ETLDELVSYIRTHAPN-VEIMADIAT---VEEAKNAARLGFDYIGTTLHGYTSYTQGQ----LLYQNDFQFLKDVLQS-- 173 (222)
T ss_dssp SCHHHHHHHHHHHCTT-SEEEEECSS---HHHHHHHHHTTCSEEECTTTTSSTTSTTC----CTTHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHCCC-EEEEECCCC---HHHHHHHHHCCCCEEEEECCCCCCCCCCC----CCHHHHHHHHHHHHHC--
T ss_conf 2099999999972885-278606798---99999999708986888346775346676----5116489999999735--
Q ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 4799984099986986799999999991998112351679
Q 000266 1218 ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1218 ~~glr~rV~IiadGGIrtG~DV~KALaLGAdaVgiGta~L 1257 (1760)
.++||+++|||+|+.|+.+++.+|||+|.+||+++
T Consensus 174 -----~~iPVia~GGI~t~~d~~~~~~~GAdgV~iGsAi~ 208 (222)
T d1y0ea_ 174 -----VDAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAIT 208 (222)
T ss_dssp -----CCSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred -----CCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHC
T ss_conf -----78858986898999999999986999999831116
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.68 E-value=7.4e-08 Score=68.28 Aligned_cols=102 Identities=14% Similarity=0.067 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 98999999999739999268998113688999999998499799992399998998522212468888999999999988
Q 000266 1138 EDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLV 1217 (1760)
Q Consensus 1138 EdL~qlI~~Lr~~~p~~pI~VKlv~~~Gig~vA~~aakaGAD~IvIsG~~GGTGaa~~~si~~~GlP~~~~L~ev~q~L~ 1217 (1760)
+++.+++.+++..++. .+..+.+.+ ...+..+.++|+|+|.+.++++++... ... ++...+.++.+.
T Consensus 115 ~~~~~~~~~~~~~~~~-~~v~~~v~t---~~~a~~a~~~Gad~i~~~~~~~~~~~~------~~~-~~~~~~~~~~~~-- 181 (230)
T d1yxya1 115 LDIASFIRQVKEKYPN-QLLMADIST---FDEGLVAHQAGIDFVGTTLSGYTPYSR------QEA-GPDVALIEALCK-- 181 (230)
T ss_dssp CCHHHHHHHHHHHCTT-CEEEEECSS---HHHHHHHHHTTCSEEECTTTTSSTTSC------CSS-SCCHHHHHHHHH--
T ss_pred HHHHHHHHHHHHCCCC-CEEECCCCC---HHHHHHHHHCCCCEEEEECCCCCCCCC------CCC-HHHHHHHHHHHC--
T ss_conf 4499999999841898-467347798---999999986088889862534423552------345-688889998733--
Q ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 4799984099986986799999999991998112351679
Q 000266 1218 ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1218 ~~glr~rV~IiadGGIrtG~DV~KALaLGAdaVgiGta~L 1257 (1760)
..+||+++|||+|+.|+.+++.+|||+|.+||+..
T Consensus 182 -----~~ipvia~GGI~t~~d~~~al~~GAd~V~vGsAi~ 216 (230)
T d1yxya1 182 -----AGIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAIT 216 (230)
T ss_dssp -----TTCCEEEESCCCSHHHHHHHHTTCCSEEEECHHHH
T ss_pred -----CCCEEEEECCCCCHHHHHHHHHCCCCEEEECHHHC
T ss_conf -----79829974899999999999986999999892434
|
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Probab=98.67 E-value=2.6e-07 Score=64.42 Aligned_cols=123 Identities=24% Similarity=0.308 Sum_probs=75.0
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEE-CCCCCCHHHHHHHHHCCCCC
Q ss_conf 99998499799992399998998522212468888999999999988479998409998-69867999999999919981
Q 000266 1171 SGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQT-DGQLKTGRDVAIAALLGAEE 1249 (1760)
Q Consensus 1171 ~~aakaGAD~IvIsG~~GGTGaa~~~si~~~GlP~~~~L~ev~q~L~~~glr~rV~Iia-dGGIrtG~DV~KALaLGAda 1249 (1760)
..+++.|+..|++|-..-. -..+.+|..+++..+|+.|.+.|+|.++.|++ +|-.|+-.+++-.+-.||++
T Consensus 172 ~~AV~~G~~ilILSDr~~~--------~~~~~IP~LLAv~aVHh~Lir~gLR~~~sIIveSGeare~Hh~A~LiGyGA~A 243 (771)
T d1ea0a2 172 EDAVRGGATHVILTDEAMG--------PARAAIPAILATGAVHTHLIRSNLRTFTSLNVRTAEGLDTHYFAVLIGVGATT 243 (771)
T ss_dssp HHHHHHTCCEEEEECTTCB--------TTEEECCHHHHHHHHHHHHHTTTCGGGCEEEEECSSCCSHHHHHHHHTTTCSE
T ss_pred HHHHHCCCCEEEEECCCCC--------CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHEEECCCCC
T ss_conf 9998489928998234566--------42003678999888999999718775321677500355145504101025222
Q ss_pred CCCCHHHHHHHCC--CCCCCCCCCCCCCCCCCCCHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCC
Q ss_conf 1235167998301--001134359898732213935674208--9899999999999999999999529988333208
Q 000266 1250 FGFSTAPLITLGC--IMMRKCHKNTCPVGIATQDPVLREKFA--GEPEHVINFFFMLAEELREIMSQLGFRTITEMIG 1323 (1760)
Q Consensus 1250 VgiGta~L~algc--~~~r~c~~~~cp~giatqdp~lr~~~~--g~~e~V~n~l~~l~~ELr~~Ma~lG~~si~elvg 1323 (1760)
|. ++|. ..+ .+.+. ..+. ...+.+.||...+...|..+|..+|.++++-.+|
T Consensus 244 V~---PYLa-~e~i~~~~~~------------------~~~~~~~~~~a~~ny~kAi~kGLlKIMSKMGIStl~SY~G 299 (771)
T d1ea0a2 244 VN---AYLA-QEAIAERHRR------------------GLFGSMPLEKGMANYKKAIDDGLLKIMSKMGISVISSYRG 299 (771)
T ss_dssp EE---CHHH-HHHHHHHHTT------------------TTTTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHTT
T ss_pred CC---HHHH-HHHHHHHHHH------------------HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_conf 48---3899-9999998754------------------4135788999999999999999999987733323557777
|
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Probab=98.65 E-value=3.1e-07 Score=63.92 Aligned_cols=130 Identities=20% Similarity=0.150 Sum_probs=81.0
Q ss_pred HHCCCCEEEECCCCC--------CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCH
Q ss_conf 985992999808998--------899864329998899999999739777101999509878678999998408000027
Q 000266 740 IKEGYTLLVLSDRAF--------SSKRVAVSSLLAVGAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAICP 811 (1760)
Q Consensus 740 v~~G~~iiVLSDr~~--------~~~~~~ip~lLAvgaVh~~Li~~glR~~vsLIvesge~RevHh~a~LlGyGAdAV~P 811 (1760)
++.|+.+|++|-... +.+++-+|..+++.-+|+.|+.+|+|.+|.|++ +|..|...|++..+.+|||+|+-
T Consensus 619 aka~aD~I~IdG~eGGTGAap~~~~~~~GlP~~~gl~~a~~~L~~~glR~~V~Lia-~Ggl~t~~Dv~ka~aLGAD~v~~ 697 (809)
T d1ofda2 619 AKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEVHRVLMENQLRDRVLLRA-DGGLKTGWDVVMAALMGAEEYGF 697 (809)
T ss_dssp HHTTCSEEEEECTTCCCSSEEHHHHHHBCCCHHHHHHHHHHHHHHTTCGGGCEEEE-ESSCCSHHHHHHHHHTTCSEEEC
T ss_pred HHCCCCEEEEECCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEE-ECCCCCHHHHHHHHHHCCCCHHH
T ss_conf 63479889983788766546677886088548999999999999769987449998-18988899999999828892667
Q ss_pred HHHH-HH---H-HHHHHCCCCCC---C-CC--CCCC-CHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCC
Q ss_conf 9999-99---9-99997499999---9-99--9989-9999999999999999999998516233401333
Q 000266 812 YLAT-EA---I-WRLQVDGKIPP---K-AS--GEFH-SKDELVKKYFKASNYGMMKVLAKMGISTLASYKG 870 (1760)
Q Consensus 812 Yla~-e~---i-~~~~~~g~~~~---~-~~--~~~~-~~~~~~~ny~~Ai~~GilKVMSKMGISTl~SY~G 870 (1760)
--++ -+ + .+.+..+.+|. | ++ ...+ ...+.+.||.+++...+..+|+.||.++++-..|
T Consensus 698 gt~~l~alGCi~~r~Ch~n~CP~GIaTqd~~l~~~~~~~~~~v~n~~~~~~~e~~~~~a~~G~~s~~elvG 768 (809)
T d1ofda2 698 GSIAMIAEGCIMARVCHTNNCPVGVATQQERLRQRFKGVPGQVVNFFYFIAEEVRSLLAHLGYRSLDDIIG 768 (809)
T ss_dssp SHHHHHHTTCCCCCCGGGTCCTTSSSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHTCSCGGGTTT
T ss_pred HHHHHHHHHCHHHHHHCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCC
T ss_conf 48999998789967627998998414789889844767279999999999999999999976999789347
|
| >d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.56 E-value=5.2e-07 Score=62.32 Aligned_cols=100 Identities=15% Similarity=0.139 Sum_probs=68.3
Q ss_pred CCCCCEEEEECCCCC---HHHHHHHHHHCCCCEEEEECCC------------CCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 999926899811368---8999999998499799992399------------9989985222124688889999999999
Q 000266 1151 NPGARISVKLVSEAG---VGVIASGVVKGHADHVLISGHD------------GGTGASRWTGIKNAGLPWELGLAETHQT 1215 (1760)
Q Consensus 1151 ~p~~pI~VKlv~~~G---ig~vA~~aakaGAD~IvIsG~~------------GGTGaa~~~si~~~GlP~~~~L~ev~q~ 1215 (1760)
..+.||.+|+.+... +...+..+.++|+++++..+.. .++|+-+...+. ..+|..+++.
T Consensus 209 ~~~~Pv~vKlsp~~~~~~i~~~a~~~~~~g~~gv~~int~~~~~~~~~~~~~~~~GGlSG~~i~------~~al~~v~~v 282 (336)
T d1f76a_ 209 HKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQ------LKSTEIIRRL 282 (336)
T ss_dssp TSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGH------HHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH------HHHHHHHHHH
T ss_conf 5767740233102343334666778886385302100011002300144323455423332058------9999999999
Q ss_pred HHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 8847999840999869867999999999919981123516799
Q 000266 1216 LVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1216 L~~~glr~rV~IiadGGIrtG~DV~KALaLGAdaVgiGta~L~ 1258 (1760)
... +..+++||+.|||.++.|+.+.+++||++|+++|++++
T Consensus 283 ~~~--~~~~ipIIG~GGI~s~~Da~e~i~aGAsaVQv~Tal~~ 323 (336)
T d1f76a_ 283 SLE--LNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIF 323 (336)
T ss_dssp HHH--HTTSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred HHH--CCCCCEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 998--08997299989979999999999809969999789995
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=97.84 E-value=0.00026 Score=43.42 Aligned_cols=104 Identities=19% Similarity=0.222 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEECCC---CCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCC-HHHHHHH
Q ss_conf 9998999999999739999268998113---68899999999849979999239999899852221246888-8999999
Q 000266 1136 SIEDLAQLIYDLKNANPGARISVKLVSE---AGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLP-WELGLAE 1211 (1760)
Q Consensus 1136 SiEdL~qlI~~Lr~~~p~~pI~VKlv~~---~Gig~vA~~aakaGAD~IvIsG~~GGTGaa~~~si~~~GlP-~~~~L~e 1211 (1760)
.++-+.+.+..+++.. +.||+||.=.. ......+..+.++|++.|+|-|.....+ +.|.+ |. .+++
T Consensus 106 ~p~~~~~iv~~~~~~~-~~pvsvK~RlG~d~~~~~~~~~~l~~~G~~~itvH~Rt~~q~--------~~~~a~~~-~i~~ 175 (305)
T d1vhna_ 106 DLRHFRYIVRELRKSV-SGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVVQS--------FTGRAEWK-ALSV 175 (305)
T ss_dssp CHHHHHHHHHHHHHHC-SSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEEESSCTTTT--------TSSCCCGG-GGGG
T ss_pred CHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECHHHHHHC--------CCCCHHHH-HHHH
T ss_conf 8899998866666411-333334544476531124788999982972787301245421--------33200346-7776
Q ss_pred HHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHH-CCCCCCCCCHHHHH
Q ss_conf 999988479998409998698679999999999-19981123516799
Q 000266 1212 THQTLVANDLRGRTILQTDGQLKTGRDVAIAAL-LGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1212 v~q~L~~~glr~rV~IiadGGIrtG~DV~KALa-LGAdaVgiGta~L~ 1258 (1760)
++.++||++.|+|.+..|+.+++. -|+|+|++||.++.
T Consensus 176 ---------~~~~ipvi~NGdI~s~~d~~~~l~~tg~dgVMiGRgal~ 214 (305)
T d1vhna_ 176 ---------LEKRIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIG 214 (305)
T ss_dssp ---------SCCSSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTT
T ss_pred ---------HHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHH
T ss_conf ---------633332103554365878999998409996713679987
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=97.64 E-value=0.0007 Score=40.40 Aligned_cols=106 Identities=13% Similarity=0.030 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCC----CH-----HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 9999999997399992689981136----88-----99999999849979999239999899852221246888899999
Q 000266 1140 LAQLIYDLKNANPGARISVKLVSEA----GV-----GVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLA 1210 (1760)
Q Consensus 1140 L~qlI~~Lr~~~p~~pI~VKlv~~~----Gi-----g~vA~~aakaGAD~IvIsG~~GGTGaa~~~si~~~GlP~~~~L~ 1210 (1760)
+.+.|..+|+.. +.|++|++.... |. ...+..+.++|+|.+.+++..-.. .+... .-|.- .....
T Consensus 196 ~~Eiv~air~~~-~~~~~vr~~~~~~~~~g~~~~~~~~~~~~l~~~g~d~~~~s~g~~~~--~~~~~--~~~~~-~~~~~ 269 (337)
T d1z41a1 196 LREIIDEVKQVW-DGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVH--ADINV--FPGYQ-VSFAE 269 (337)
T ss_dssp HHHHHHHHHHHC-CSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSC--CCCCC--CTTTT-HHHHH
T ss_pred HHHHHHHHHHHH-CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC--CCCCC--CCCCC-HHHHH
T ss_conf 999998776650-35634885342234676410446899999998498620122123445--55456--87400-78999
Q ss_pred HHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCC-CCCCCCCHHHHH
Q ss_conf 999998847999840999869867999999999919-981123516799
Q 000266 1211 ETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG-AEEFGFSTAPLI 1258 (1760)
Q Consensus 1211 ev~q~L~~~glr~rV~IiadGGIrtG~DV~KALaLG-AdaVgiGta~L~ 1258 (1760)
.+.+. -+++|++.|+|.++.++.++|.-| ||.|+|||+++.
T Consensus 270 ~ik~~-------~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~ia 311 (337)
T d1z41a1 270 KIREQ-------ADMATGAVGMITDGSMAEEILQNGRADLIFIGRELLR 311 (337)
T ss_dssp HHHHH-------HCCEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHH
T ss_pred HHHHH-------CCCEEEEECCCCCHHHHHHHHHCCCCCEEHHHHHHHH
T ss_conf 99986-------6930899689199999999998799565066599886
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.58 E-value=0.00097 Score=39.42 Aligned_cols=120 Identities=16% Similarity=0.121 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHCC-CCCEEEEECCCC----C-----H-HHHHHHHHHCCCCEEEEECCCCC-CCCCCCCCCC-CCCCCHH
Q ss_conf 9999999997399-992689981136----8-----8-99999999849979999239999-8998522212-4688889
Q 000266 1140 LAQLIYDLKNANP-GARISVKLVSEA----G-----V-GVIASGVVKGHADHVLISGHDGG-TGASRWTGIK-NAGLPWE 1206 (1760)
Q Consensus 1140 L~qlI~~Lr~~~p-~~pI~VKlv~~~----G-----i-g~vA~~aakaGAD~IvIsG~~GG-TGaa~~~si~-~~GlP~~ 1206 (1760)
+.+.|..+|+..+ +.||++|+...- | . ......+++.++|.+.||...-- .+........ .-+ .+.
T Consensus 202 ~~EIi~aIr~~vg~~~~i~~R~s~~~~~~~~~~~~e~~~~~~~~l~~~~vd~~~vs~g~~~~~~~~~~~~~~~~~~-~~~ 280 (340)
T d1djqa1 202 WLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEAEVDGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQG-HTI 280 (340)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEEEEECSSCTTSCCTTTHHHHHHHHHTTTCSEEEEEESCSTTGGGTSCCTTTCCTT-TTH
T ss_pred HHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCC-CCH
T ss_conf 9999998888875530011534500035577773446689998877631464423314401234555555557865-457
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCC-CCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 9999999998847999840999869867999999999919-981123516799830100113435989873221393567
Q 000266 1207 LGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG-AEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLR 1285 (1760)
Q Consensus 1207 ~~L~ev~q~L~~~glr~rV~IiadGGIrtG~DV~KALaLG-AdaVgiGta~L~algc~~~r~c~~~~cp~giatqdp~lr 1285 (1760)
. .+ +.++. ..+++|++.|+|++..++.+++.-| ||.|+|||+++. ||.+.
T Consensus 281 ~---~~-~~ik~---~~~~pVi~~G~i~~~~~a~~~l~~G~aDlV~~gR~~ia----------------------dPdl~ 331 (340)
T d1djqa1 281 P---WV-KLVKQ---VSKKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIA----------------------DPFLP 331 (340)
T ss_dssp H---HH-HHHHT---TCSSCEEECSCCCCHHHHHHHHHTTSCSBEEESHHHHH----------------------CTTHH
T ss_pred H---HH-HHHHH---HCCCEEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHH----------------------CCCHH
T ss_conf 8---99-99998---75980999899899999999998799411145899997----------------------90199
Q ss_pred HHCC
Q ss_conf 4208
Q 000266 1286 EKFA 1289 (1760)
Q Consensus 1286 ~~~~ 1289 (1760)
+|+.
T Consensus 332 ~k~~ 335 (340)
T d1djqa1 332 QKVE 335 (340)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9998
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.50 E-value=0.0012 Score=38.76 Aligned_cols=111 Identities=11% Similarity=0.001 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHCC-CCCEEEEECCCC----C-----HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 9999999997399-992689981136----8-----89999999984997999923999989985222124688889999
Q 000266 1140 LAQLIYDLKNANP-GARISVKLVSEA----G-----VGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGL 1209 (1760)
Q Consensus 1140 L~qlI~~Lr~~~p-~~pI~VKlv~~~----G-----ig~vA~~aakaGAD~IvIsG~~GGTGaa~~~si~~~GlP~~~~L 1209 (1760)
+.+.|..+|+..+ +.+|++++...- | ...++..+.++|+|.+.++...-.. ..+.. ....|.-. .
T Consensus 194 ~~Eii~air~~vg~d~~v~~R~s~~d~~~~g~~~~~~~~~~~~l~~~g~d~~~~~~g~~~~-~~~~~---~~~~~~~~-~ 268 (330)
T d1ps9a1 194 AVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEA-RIPTI---ATPVPRGA-F 268 (330)
T ss_dssp HHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTC-SSCSS---STTSCTTT-T
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCC---CCCCCCHH-H
T ss_conf 9999999999738876057515610014688888999999999998500022112465444-32334---77776206-7
Q ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCC-CCCCCCCHHHHH
Q ss_conf 9999998847999840999869867999999999919-981123516799
Q 000266 1210 AETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG-AEEFGFSTAPLI 1258 (1760)
Q Consensus 1210 ~ev~q~L~~~glr~rV~IiadGGIrtG~DV~KALaLG-AdaVgiGta~L~ 1258 (1760)
......+++ .-.++|++.|+|.+..++-++|.-| ||.|+|||+++.
T Consensus 269 ~~~~~~ik~---~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~ia 315 (330)
T d1ps9a1 269 SWVTRKLKG---HVSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLA 315 (330)
T ss_dssp HHHHHHHTT---SCSSCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHH
T ss_pred HHHHHHHHH---HCCCEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 999999986---47961999699898999999998799661576299986
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=97.41 E-value=0.00023 Score=43.83 Aligned_cols=122 Identities=12% Similarity=0.128 Sum_probs=89.0
Q ss_pred HHHHHHHHCCCCEEEECCCCCC----------CCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 9999999859929998089988----------998643299988999999997397771019995098786789999984
Q 000266 734 AEARDAIKEGYTLLVLSDRAFS----------SKRVAVSSLLAVGAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVG 803 (1760)
Q Consensus 734 ~eA~~Av~~G~~iiVLSDr~~~----------~~~~~ip~lLAvgaVh~~Li~~glR~~vsLIvesge~RevHh~a~LlG 803 (1760)
+.+..+++.|+..|++|-.... ...+.+|..-++..++..+.....+.++.||+ +|.+|...|++..|.
T Consensus 173 ~~a~~~~~~GaD~i~v~~~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~v~via-dGGIr~g~Dv~KAla 251 (329)
T d1p0ka_ 173 ASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIA-SGGLQDALDVAKAIA 251 (329)
T ss_dssp HHHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEE-ESSCCSHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE-CCCCCCHHHHHHHHH
T ss_conf 9999999647999997678988754551112036766406768999999999984158916997-388463999999998
Q ss_pred CCCCCCC---HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCHH
Q ss_conf 0800002---7999999999997499999999998999999999999999999999985162334013334102
Q 000266 804 FGADAIC---PYLATEAIWRLQVDGKIPPKASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIF 874 (1760)
Q Consensus 804 yGAdAV~---PYla~e~i~~~~~~g~~~~~~~~~~~~~~~~~~ny~~Ai~~GilKVMSKMGISTl~SY~GAQiF 874 (1760)
.|||||. |+| |... . ..++.+.||+..+..+|.-.|+.||.++++..+...+.
T Consensus 252 lGAdaV~iGr~~l-~al~----~-------------~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~lv 307 (329)
T d1p0ka_ 252 LGASCTGMAGHFL-KALT----D-------------SGEEGLLEEIQLILEELKLIMTVLGARTIADLQKAPLV 307 (329)
T ss_dssp TTCSEEEECHHHH-HHHH----H-------------HHHHHHHHHHHHHHHHHHHHHHHHTCCBHHHHTTCCEE
T ss_pred CCCCCHHCCHHHH-HHHC----C-------------CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCEE
T ss_conf 2999320247888-8761----4-------------77999999999999999999998689989994868788
|
| >d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.30 E-value=0.0022 Score=36.96 Aligned_cols=79 Identities=23% Similarity=0.154 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 88999999998499799992399998998522212468888999999999988479998409998698679999999999
Q 000266 1165 GVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAAL 1244 (1760)
Q Consensus 1165 Gig~vA~~aakaGAD~IvIsG~~GGTGaa~~~si~~~GlP~~~~L~ev~q~L~~~glr~rV~IiadGGIrtG~DV~KALa 1244 (1760)
.--..+..+.+.|+..+.--|...|+|. |+-....+..+... .+|+||+|+||.++.|+.+|+-
T Consensus 136 ~D~v~ak~le~~Gc~~vMplgsPIGsg~---------Gi~n~~~l~~i~~~-------~~vpvivdAGIg~psdaa~AME 199 (243)
T d1wv2a_ 136 DDPIIARQLAEIGCIAVMPLAGLIGSGL---------GICNPYNLRIILEE-------AKVPVLVDAGVGTASDAAIAME 199 (243)
T ss_dssp SCHHHHHHHHHSCCSEEEECSSSTTCCC---------CCSCHHHHHHHHHH-------CSSCBEEESCCCSHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCEEEEECCCCCCCCC---------CCCCHHHHHHCCCC-------CCCCEEEECCCCCHHHHHHHHH
T ss_conf 7889876788717504663265222463---------20367888760015-------7833685246687777999997
Q ss_pred CCCCCCCCCHHHHHH
Q ss_conf 199811235167998
Q 000266 1245 LGAEEFGFSTAPLIT 1259 (1760)
Q Consensus 1245 LGAdaVgiGta~L~a 1259 (1760)
||+|+|.+.|+..-+
T Consensus 200 lG~dgVLvnsaIa~A 214 (243)
T d1wv2a_ 200 LGCEAVLMNTAIAHA 214 (243)
T ss_dssp HTCSEEEESHHHHTS
T ss_pred CCCCEEEECHHHHCC
T ss_conf 459899865476638
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.19 E-value=0.0056 Score=34.06 Aligned_cols=146 Identities=14% Similarity=0.194 Sum_probs=110.3
Q ss_pred CCCCCCHHHHHHHHHCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHH
Q ss_conf 37734999999999604799704899988507979123999999999999999985992999808998899864329998
Q 000266 687 KGPLLSIEEMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRVAVSSLLA 766 (1760)
Q Consensus 687 ~sPIL~~~el~~lk~~~~~~~~~~~id~tf~~~~g~~gL~~aL~~l~~eA~~Av~~G~~iiVLSDr~~~~~~~~ip~lLA 766 (1760)
..+-|++.++.+++.. |....+-.-... - ..|..+++.|.+-+++|...........++.-.
T Consensus 229 ~~~~l~~~~i~~i~~~----~~~~~i~kgi~~------~--------~da~~~~~~G~~~i~vsnhggr~~d~~~~~~~~ 290 (414)
T d1kbia1 229 IDPSLTWKDIEELKKK----TKLPIVIKGVQR------T--------EDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEV 290 (414)
T ss_dssp BCTTCCHHHHHHHHHH----CSSCEEEEEECS------H--------HHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHH
T ss_pred CCCCCCHHHHHHHHCC----CCCEEEEECCCH------H--------HHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf 0668999999998615----775277520000------6--------777788743886245223211111112200000
Q ss_pred HHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf 89999999973977710199950987867899999840800002---799999999999749999999999899999999
Q 000266 767 VGAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAIC---PYLATEAIWRLQVDGKIPPKASGEFHSKDELVK 843 (1760)
Q Consensus 767 vgaVh~~Li~~glR~~vsLIvesge~RevHh~a~LlGyGAdAV~---PYla~e~i~~~~~~g~~~~~~~~~~~~~~~~~~ 843 (1760)
+..+...+.......++.||+ ||.+|+-.|++.-|.+|||+|- |+|---.. ..++.+.
T Consensus 291 l~~i~~~~~~~~v~~~~~via-dGGIR~G~DVaKALALGAdaVgigrp~L~~la~------------------~G~egv~ 351 (414)
T d1kbia1 291 LAETMPILEQRNLKDKLEVFV-DGGVRRGTDVLKALCLGAKGVGLGRPFLYANSC------------------YGRNGVE 351 (414)
T ss_dssp HHHHHHHHHTTTCBTTBEEEE-ESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHH------------------HHHHHHH
T ss_pred HHHHHHHHHHHCCCCCEEEEE-CCCCCCHHHHHHHHHCCCCEEEECHHHHHHHHH------------------CCHHHHH
T ss_conf 024666664111488513885-388676789999997589988776899999984------------------4699999
Q ss_pred HHHHHHHHHHHHHHHHHCHHHHHCCC
Q ss_conf 99999999999999851623340133
Q 000266 844 KYFKASNYGMMKVLAKMGISTLASYK 869 (1760)
Q Consensus 844 ny~~Ai~~GilKVMSKMGISTl~SY~ 869 (1760)
+++..+...|..+|.=+|..++...+
T Consensus 352 ~~l~~l~~EL~~~M~l~G~~si~eL~ 377 (414)
T d1kbia1 352 KAIEILRDEIEMSMRLLGVTSIAELK 377 (414)
T ss_dssp HHHHHHHHHHHHHHHHHTCCBGGGCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHCC
T ss_conf 99999999999999985899978919
|
| >d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Aquifex aeolicus [TaxId: 63363]
Probab=97.18 E-value=0.0032 Score=35.76 Aligned_cols=101 Identities=15% Similarity=0.167 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCH------HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 998999999999739999268998113688------99999999849979999239999899852221246888899999
Q 000266 1137 IEDLAQLIYDLKNANPGARISVKLVSEAGV------GVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLA 1210 (1760)
Q Consensus 1137 iEdL~qlI~~Lr~~~p~~pI~VKlv~~~Gi------g~vA~~aakaGAD~IvIsG~~GGTGaa~~~si~~~GlP~~~~L~ 1210 (1760)
++.+.+.|..++...++. .+|.+.+.+. ...+..+.++|||+|--|-.-+..|++ ...+.
T Consensus 101 ~~~v~~ei~~v~~~~~~~--~lKVIlEt~~L~~~ei~~a~~~a~~aGadfiKTSTG~~~~gat------------~e~v~ 166 (225)
T d1mzha_ 101 YDFVVEELKEIFRETPSA--VHKVIVETPYLNEEEIKKAVEICIEAGADFIKTSTGFAPRGTT------------LEEVR 166 (225)
T ss_dssp HHHHHHHHHHHHHTCTTS--EEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCCSCSSSCCC------------HHHHH
T ss_pred HHHHHHHHHHHHHHCCCC--EEEHHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC------------HHHHH
T ss_conf 799999999999865686--0421132134787999999999998043517646887889888------------99999
Q ss_pred HHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 9999988479998409998698679999999999199811235167
Q 000266 1211 ETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAP 1256 (1760)
Q Consensus 1211 ev~q~L~~~glr~rV~IiadGGIrtG~DV~KALaLGAdaVgiGta~ 1256 (1760)
..++. +++++.|-++|||||..|+...+.+||+.+|-++.+
T Consensus 167 ~m~~~-----~~~~~~iKasGGIrt~~~a~~~i~~Ga~RiGtSs~~ 207 (225)
T d1mzha_ 167 LIKSS-----AKGRIKVKASGGIRDLETAISMIEAGADRIGTSSGI 207 (225)
T ss_dssp HHHHH-----HTTSSEEEEESSCCSHHHHHHHHHTTCSEEEESCHH
T ss_pred HHHHH-----HCCCCEEECCCCCCCHHHHHHHHHHCHHHEECCCHH
T ss_conf 99998-----587844877179899999999998452642147589
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=97.11 E-value=0.0051 Score=34.38 Aligned_cols=103 Identities=22% Similarity=0.284 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH------HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 99989999999997399992689981136889------999999984997999923999989985222124688889999
Q 000266 1136 SIEDLAQLIYDLKNANPGARISVKLVSEAGVG------VIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGL 1209 (1760)
Q Consensus 1136 SiEdL~qlI~~Lr~~~p~~pI~VKlv~~~Gig------~vA~~aakaGAD~IvIsG~~GGTGaa~~~si~~~GlP~~~~L 1209 (1760)
.++.+.+.|..+++.-++ ..+|.+.+.+.- .....+.++|+|+|.-|-.-+..|++ ..-+
T Consensus 100 ~~~~v~~ei~~v~~~~~~--~~lKVIlEt~~L~~~ei~~a~~~a~~aGadfiKTSTG~~~~gat------------~e~v 165 (211)
T d1ub3a_ 100 DLDYLEAEVRAVREAVPQ--AVLKVILETGYFSPEEIARLAEAAIRGGADFLKTSTGFGPRGAS------------LEDV 165 (211)
T ss_dssp CHHHHHHHHHHHHHHSTT--SEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCCSSSSCCCC------------HHHH
T ss_pred CHHHHHHHHHHHHHHCCC--CCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCC------------HHHH
T ss_conf 888999999999986467--72688850253899999999999998163438836887889987------------8999
Q ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 999999884799984099986986799999999991998112351679
Q 000266 1210 AETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1210 ~ev~q~L~~~glr~rV~IiadGGIrtG~DV~KALaLGAdaVgiGta~L 1257 (1760)
....+. +++++.|=++|||||..|+...+.+||+..|-.++.-
T Consensus 166 ~~m~~~-----~~~~~~iKasGGIrt~~~a~~~l~aGa~riGtSs~~~ 208 (211)
T d1ub3a_ 166 ALLVRV-----AQGRAQVKAAGGIRDRETALRMLKAGASRLGTSSGVA 208 (211)
T ss_dssp HHHHHH-----HTTSSEEEEESSCCSHHHHHHHHHTTCSEEEETTHHH
T ss_pred HHHHHH-----HCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 999998-----6778549770797999999999998516711383778
|
| >d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermotoga maritima [TaxId: 2336]
Probab=97.02 E-value=0.0064 Score=33.67 Aligned_cols=102 Identities=18% Similarity=0.079 Sum_probs=66.9
Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEECCCCCH------HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 9998999999999739999268998113688------9999999984997999923999989985222124688889999
Q 000266 1136 SIEDLAQLIYDLKNANPGARISVKLVSEAGV------GVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGL 1209 (1760)
Q Consensus 1136 SiEdL~qlI~~Lr~~~p~~pI~VKlv~~~Gi------g~vA~~aakaGAD~IvIsG~~GGTGaa~~~si~~~GlP~~~~L 1209 (1760)
.++.+.+.|..++...+ ...+|.+.+.+. ...+..+.++|||+|.-|-.-+..|+ +...+
T Consensus 133 ~~~~v~~ei~~v~~~~~--~~~lKVIlEt~~L~~~e~~~a~~ia~~aGadfvKTSTGf~~~ga------------t~e~V 198 (251)
T d1o0ya_ 133 EWEYVYEDIRSVVESVK--GKVVKVIIETCYLDTEEKIAACVISKLAGAHFVKTSTGFGTGGA------------TAEDV 198 (251)
T ss_dssp CHHHHHHHHHHHHHHTT--TSEEEEECCGGGCCHHHHHHHHHHHHHTTCSEEECCCSSSSCCC------------CHHHH
T ss_pred CHHHHHHHHHHHHHHHC--CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCC------------CHHHH
T ss_conf 78999999999999845--33214431212368189999999999828542542688778886------------78999
Q ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 99999988479998409998698679999999999199811235167
Q 000266 1210 AETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAP 1256 (1760)
Q Consensus 1210 ~ev~q~L~~~glr~rV~IiadGGIrtG~DV~KALaLGAdaVgiGta~ 1256 (1760)
....+. +++++-|=++|||||..|+...+.+||+.+|-.+..
T Consensus 199 ~~m~~~-----~~~~~giKasGGIrt~~~a~~~i~aGa~riGtSs~~ 240 (251)
T d1o0ya_ 199 HLMKWI-----VGDEMGVKASGGIRTFEDAVKMIMYGADRIGTSSGV 240 (251)
T ss_dssp HHHHHH-----HCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESCHH
T ss_pred HHHHHH-----HCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCHH
T ss_conf 999998-----677764846389599999999999852774787479
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Probab=96.94 E-value=0.0051 Score=34.34 Aligned_cols=112 Identities=13% Similarity=0.096 Sum_probs=79.9
Q ss_pred HHHHHHHHCCCCEEEECCCCCC------------------CCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCH
Q ss_conf 9999999859929998089988------------------9986432999889999999973977710199950987867
Q 000266 734 AEARDAIKEGYTLLVLSDRAFS------------------SKRVAVSSLLAVGAVHHHLVKNLERTRIGLIVESAEPREV 795 (1760)
Q Consensus 734 ~eA~~Av~~G~~iiVLSDr~~~------------------~~~~~ip~lLAvgaVh~~Li~~glR~~vsLIvesge~Rev 795 (1760)
+.+..+++.|+..|++|.+... .....+|++-++-.+.. .+.++.||+ .|.+|.-
T Consensus 174 e~a~~~~~aGvd~i~vsn~gg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~al~~~~~------~~~~i~Ii~-dGGIr~g 246 (310)
T d1vcfa1 174 EAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVRE------VLPHLPLVA-SGGVYTG 246 (310)
T ss_dssp HHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHH------HCSSSCEEE-ESSCCSH
T ss_pred HHHHHHHHCCCCEEEECCCCCCCHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHH------HCCCCEEEE-CCCCCCH
T ss_conf 999999985998898246555542004000025730112232113689999999986------358981775-8997856
Q ss_pred HHHHHHHHCCCCCCC---HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCC
Q ss_conf 899999840800002---7999999999997499999999998999999999999999999999985162334013334
Q 000266 796 HHFCTLVGFGADAIC---PYLATEAIWRLQVDGKIPPKASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGA 871 (1760)
Q Consensus 796 Hh~a~LlGyGAdAV~---PYla~e~i~~~~~~g~~~~~~~~~~~~~~~~~~ny~~Ai~~GilKVMSKMGISTl~SY~GA 871 (1760)
.|++..|.+|||||. |+|- . + ..-.+.+.+++.-+..+|.-.|+-+|..+++..+|.
T Consensus 247 ~Dv~KALalGAdaV~iGr~~l~-~-~-----------------~~G~~gv~~~l~~l~~El~~~m~~~G~~~i~el~g~ 306 (310)
T d1vcfa1 247 TDGAKALALGADLLAVARPLLR-P-A-----------------LEGAERVAAWIGDYLEELRTALFAIGARNPKEARGR 306 (310)
T ss_dssp HHHHHHHHHTCSEEEECGGGHH-H-H-----------------TTCHHHHHHHHHHHHHHHHHHHHHHTCSSGGGGTTC
T ss_pred HHHHHHHHHCCCEEEEHHHHHH-H-H-----------------CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 9999999939997447489999-8-6-----------------217999999999999999999998688999999516
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=96.82 E-value=0.0084 Score=32.83 Aligned_cols=78 Identities=21% Similarity=0.179 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 88999999998499799992399998998522212468888999999999988479998409998698679999999999
Q 000266 1165 GVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAAL 1244 (1760)
Q Consensus 1165 Gig~vA~~aakaGAD~IvIsG~~GGTGaa~~~si~~~GlP~~~~L~ev~q~L~~~glr~rV~IiadGGIrtG~DV~KALa 1244 (1760)
.--..|..+.++|+..|--=|..=|+|- |+-....|..+.+. -+||||+|.||.++.|++.|+-
T Consensus 134 ~D~v~ak~Le~~Gc~avMPlgsPIGSg~---------Gl~n~~~l~~i~~~-------~~vPvIvDAGIG~pSdAa~AME 197 (251)
T d1xm3a_ 134 DDVVLARKLEELGVHAIMPGASPIGSGQ---------GILNPLNLSFIIEQ-------AKVPVIVDAGIGSPKDAAYAME 197 (251)
T ss_dssp SCHHHHHHHHHHTCSCBEECSSSTTCCC---------CCSCHHHHHHHHHH-------CSSCBEEESCCCSHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHCCC---------CCCCHHHHHHHHHC-------CCCCEEEECCCCCHHHHHHHHH
T ss_conf 8989999998748713887664541488---------75786799999861-------8966897358898899999997
Q ss_pred CCCCCCCCCHHHHH
Q ss_conf 19981123516799
Q 000266 1245 LGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1245 LGAdaVgiGta~L~ 1258 (1760)
||+|+|.+.|+.-.
T Consensus 198 lG~daVLvNTAIA~ 211 (251)
T d1xm3a_ 198 LGADGVLLNTAVSG 211 (251)
T ss_dssp TTCSEEEESHHHHT
T ss_pred CCCCEEEECHHHHC
T ss_conf 03999994436561
|
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.78 E-value=0.013 Score=31.59 Aligned_cols=145 Identities=14% Similarity=0.167 Sum_probs=99.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC
Q ss_conf 17953773499999999960479970489998850797912399999999999999998599299980899889986432
Q 000266 683 RLSLKGPLLSIEEMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRVAVS 762 (1760)
Q Consensus 683 rl~L~sPIL~~~el~~lk~~~~~~~~~~~id~tf~~~~g~~gL~~aL~~l~~eA~~Av~~G~~iiVLSDr~~~~~~~~ip 762 (1760)
......|-++++++.+|+... +...+--... +. +.+..|++.|+..+++|......-.-.++
T Consensus 196 ~~~~~~~~~~~~~i~~l~~~~----~~pii~Kgi~---~~-----------~da~~a~~~G~d~i~vsnhggr~~d~~~~ 257 (349)
T d1tb3a1 196 PVSFPKASFCWNDLSLLQSIT----RLPIILKGIL---TK-----------EDAELAMKHNVQGIVVSNHGGRQLDEVSA 257 (349)
T ss_dssp ------CCCCHHHHHHHHTTC----CSCEEEEEEC---SH-----------HHHHHHHHTTCSEEEECCGGGTSSCSBCC
T ss_pred CCCCCCCCCCHHHHHHHHHHC----CCCCCCCHHH---HH-----------HHHHHHHHHHCCCEEEECCCCCCCCCCCC
T ss_conf 212667788989999999854----7883000100---06-----------88999998512100110211000024653
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 999889999999973977710199950987867899999840800002---79999999999974999999999989999
Q 000266 763 SLLAVGAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAIC---PYLATEAIWRLQVDGKIPPKASGEFHSKD 839 (1760)
Q Consensus 763 ~lLAvgaVh~~Li~~glR~~vsLIvesge~RevHh~a~LlGyGAdAV~---PYla~e~i~~~~~~g~~~~~~~~~~~~~~ 839 (1760)
++-++..+... ...++.||+ +|.+|.--|++..|.+|||+|. |+| |.... ..+
T Consensus 258 ~~~~l~~i~~~-----~~~~~~iia-dGGIR~G~Dv~KALALGA~~V~igrp~L-~~la~-----------------~G~ 313 (349)
T d1tb3a1 258 SIDALREVVAA-----VKGKIEVYM-DGGVRTGTDVLKALALGARCIFLGRPIL-WGLAC-----------------KGE 313 (349)
T ss_dssp HHHHHHHHHHH-----HTTSSEEEE-ESSCCSHHHHHHHHHTTCSCEEESHHHH-HHHHH-----------------HHH
T ss_pred CHHHCCEEEEC-----CCCCEEEEE-CCCCCCHHHHHHHHHCCCCEEEECHHHH-HHHHH-----------------CCH
T ss_conf 12212102201-----578756886-0676757789999985899899876999-99996-----------------449
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCHHHHHCCC
Q ss_conf 999999999999999999851623340133
Q 000266 840 ELVKKYFKASNYGMMKVLAKMGISTLASYK 869 (1760)
Q Consensus 840 ~~~~ny~~Ai~~GilKVMSKMGISTl~SY~ 869 (1760)
+.+.++++-+...|..+|.-+|.++++..+
T Consensus 314 ~gv~~~l~~l~~EL~~~M~l~G~~~i~eL~ 343 (349)
T d1tb3a1 314 DGVKEVLDILTAELHRCMTLSGCQSVAEIS 343 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSBGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHCC
T ss_conf 999999999999999999996899978869
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=96.62 E-value=0.016 Score=30.86 Aligned_cols=101 Identities=12% Similarity=0.128 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCC--------CCHH-----HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 999999999739999268998113--------6889-----999999984997999923999989985222124688889
Q 000266 1140 LAQLIYDLKNANPGARISVKLVSE--------AGVG-----VIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWE 1206 (1760)
Q Consensus 1140 L~qlI~~Lr~~~p~~pI~VKlv~~--------~Gig-----~vA~~aakaGAD~IvIsG~~GGTGaa~~~si~~~GlP~~ 1206 (1760)
+.+.|..+|+..++-+|++++.+. .|.. .++..+.++|+|+|.+|..+- ..+.|+.
T Consensus 213 ~~Eii~aIr~~~g~d~i~~r~s~~~~~~~~~~gg~~~~e~~~~~~~l~~~gvd~i~vs~~~~-----------~~~~~~~ 281 (363)
T d1vyra_ 213 VLEVVDAVCNEWSADRIGIRVSPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDL-----------AGGKPYS 281 (363)
T ss_dssp HHHHHHHHHHHSCGGGEEEEECCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBT-----------TBCCCCC
T ss_pred HHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHCCCCHHHHHHHHHHHHHCCCEEEECCCCCC-----------CCCCCCC
T ss_conf 78887655530478874123113233111000133068899999987742980662034776-----------6786532
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCC-CCCCCCCHHHHH
Q ss_conf 9999999998847999840999869867999999999919-981123516799
Q 000266 1207 LGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG-AEEFGFSTAPLI 1258 (1760)
Q Consensus 1207 ~~L~ev~q~L~~~glr~rV~IiadGGIrtG~DV~KALaLG-AdaVgiGta~L~ 1258 (1760)
..++...+.. -.++|++.| +.|..++-++|.-| ||.|+|||+++.
T Consensus 282 ~~~~~~~~~~------~~~~vi~~G-~~t~~~ae~~l~~G~~DlV~~gR~lia 327 (363)
T d1vyra_ 282 EAFRQKVRER------FHGVIIGAG-AYTAEKAEDLIGKGLIDAVAFGRDYIA 327 (363)
T ss_dssp HHHHHHHHHH------CCSEEEEES-SCCHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred HHHHHHHHHH------CCCEEEECC-CCCHHHHHHHHHCCCCCEEHHHHHHHH
T ss_conf 8889998986------585399668-999999999998799651155499987
|
| >d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.24 E-value=0.026 Score=29.35 Aligned_cols=99 Identities=20% Similarity=0.166 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCHH------HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 989999999997399992689981136889------99999998499799992399998998522212468888999999
Q 000266 1138 EDLAQLIYDLKNANPGARISVKLVSEAGVG------VIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAE 1211 (1760)
Q Consensus 1138 EdL~qlI~~Lr~~~p~~pI~VKlv~~~Gig------~vA~~aakaGAD~IvIsG~~GGTGaa~~~si~~~GlP~~~~L~e 1211 (1760)
+++.+.+...+. . + ..+|.+.+.+.. ..+..+.++|||+|--|-.-+..|+ .++... .
T Consensus 120 ~ev~~~~~~~~~-~-g--~~lKVIlEt~~L~~~~i~~a~~~a~~aGadFVKTSTG~~~~ga-----------t~~~~~-~ 183 (234)
T d1n7ka_ 120 REVSGIVKLAKS-Y-G--AVVKVILEAPLWDDKTLSLLVDSSRRAGADIVKTSTGVYTKGG-----------DPVTVF-R 183 (234)
T ss_dssp HHHHHHHHHHHH-T-T--CEEEEECCGGGSCHHHHHHHHHHHHHTTCSEEESCCSSSCCCC-----------SHHHHH-H
T ss_pred HHHHHHHHHHHC-C-C--CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCC-----------CHHHHH-H
T ss_conf 789999998741-5-8--6389997513364679999999998864125022666568998-----------779999-9
Q ss_pred HHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 999988479998409998698679999999999199811235167
Q 000266 1212 THQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAP 1256 (1760)
Q Consensus 1212 v~q~L~~~glr~rV~IiadGGIrtG~DV~KALaLGAdaVgiGta~ 1256 (1760)
..+... ..++.|-++|||||..|+...+.+||+.+|-.++.
T Consensus 184 l~~~~~----~~~vgIKasGGIrt~~~a~~~i~aGa~rIGtSs~~ 224 (234)
T d1n7ka_ 184 LASLAK----PLGMGVKASGGIRSGIDAVLAVGAGADIIGTSSAV 224 (234)
T ss_dssp HHHHHG----GGTCEEEEESSCCSHHHHHHHHHTTCSEEEETTHH
T ss_pred HHHHHC----CCCCCEEEECCCCCHHHHHHHHHCCCCEEECCHHH
T ss_conf 999860----79971880479699999999998067134216199
|
| >d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Escherichia coli [TaxId: 562]
Probab=96.12 E-value=0.0054 Score=34.20 Aligned_cols=102 Identities=20% Similarity=0.184 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCH----HHH--H-HHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 8999999999739999268998113688----999--9-99998499799992399998998522212468888999999
Q 000266 1139 DLAQLIYDLKNANPGARISVKLVSEAGV----GVI--A-SGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAE 1211 (1760)
Q Consensus 1139 dL~qlI~~Lr~~~p~~pI~VKlv~~~Gi----g~v--A-~~aakaGAD~IvIsG~~GGTGaa~~~si~~~GlP~~~~L~e 1211 (1760)
.+.+.|..++..-....+.+|.+.+.+. ..+ + ..+.++|||+|--|-.-+..|+. ...+..
T Consensus 117 ~v~~ei~~v~~~~~~~~~~lKVIlEt~~Ltd~e~i~~a~~ia~~aGadFvKTSTG~~~~gat------------~~~v~~ 184 (250)
T d1p1xa_ 117 VGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIKAGADFIKTSTGKVAVNAT------------PESARI 184 (250)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECCHHHHCSHHHHHHHHHHHHHTTCSEEECCCSCSSCCCC------------HHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC------------HHHHHH
T ss_conf 99999999998614578538999714556869999999999997396738706886888888------------899999
Q ss_pred HHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 99998847999840999869867999999999919981123
Q 000266 1212 THQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGF 1252 (1760)
Q Consensus 1212 v~q~L~~~glr~rV~IiadGGIrtG~DV~KALaLGAdaVgi 1252 (1760)
..+.+...+...++.|-++|||||..|+...+.+||+.+|-
T Consensus 185 m~~~i~~~~~~~~vgIKasGGIrt~~~a~~~i~~ga~~iG~ 225 (250)
T d1p1xa_ 185 MMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAIADELFGA 225 (250)
T ss_dssp HHHHHHHHTCTTTCEEECBSSCCSHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99985542347641037458979999999999999887383
|
| >d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Membrane-associated (S)-mandelate dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.93 E-value=0.037 Score=28.34 Aligned_cols=137 Identities=15% Similarity=0.168 Sum_probs=93.9
Q ss_pred CCCCCCHHHHHHHHHCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCC---CCCCCCCCCH
Q ss_conf 3773499999999960479970489998850797912399999999999999998599299980899---8899864329
Q 000266 687 KGPLLSIEEMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRA---FSSKRVAVSS 763 (1760)
Q Consensus 687 ~sPIL~~~el~~lk~~~~~~~~~~~id~tf~~~~g~~gL~~aL~~l~~eA~~Av~~G~~iiVLSDr~---~~~~~~~ip~ 763 (1760)
..|.++..+++.++.... -+.....+. + -..+..+.+.|+.-+++|+-. ...-..++.+
T Consensus 205 ~~~~~~~~~i~~l~~~~~--~~i~~kgv~-----~-----------~~~~~~a~~~g~~~~~~s~~gg~~~~~~~~~~~~ 266 (353)
T d1p4ca_ 205 MDASFNWEALRWLRDLWP--HKLLVKGLL-----S-----------AEDADRCIAEGADGVILSNHGGRQLDCAISPMEV 266 (353)
T ss_dssp CCTTCCHHHHHHHHHHCC--SEEEEEEEC-----C-----------HHHHHHHHHTTCSEEEECCGGGTSCTTCCCGGGT
T ss_pred CCCCCCHHHHHHHHHCCC--CCHHHHCCH-----H-----------HHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCHHC
T ss_conf 577778999999986246--522232003-----4-----------5667777763886132013332233565540010
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCC---CHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf 9988999999997397771019995098786789999984080000---2799999999999749999999999899999
Q 000266 764 LLAVGAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAI---CPYLATEAIWRLQVDGKIPPKASGEFHSKDE 840 (1760)
Q Consensus 764 lLAvgaVh~~Li~~glR~~vsLIvesge~RevHh~a~LlGyGAdAV---~PYla~e~i~~~~~~g~~~~~~~~~~~~~~~ 840 (1760)
+..+... ..+.||+ ||.+|.--|++.-|.+|||+| -|+| +.... ..++
T Consensus 267 l~~i~~~----------~~~~via-sGGIR~G~Dv~KALaLGAd~vgigrp~L-~~l~~-----------------~G~e 317 (353)
T d1p4ca_ 267 LAQSVAK----------TGKPVLI-DSGFRRGSDIVKALALGAEAVLLGRATL-YGLAA-----------------RGET 317 (353)
T ss_dssp HHHHHHH----------HCSCEEE-CSSCCSHHHHHHHHHTTCSCEEESHHHH-HHHHH-----------------HHHH
T ss_pred CCCHHCC----------CCCCEEE-CCCCCCHHHHHHHHHCCCCEEEECHHHH-HHHHH-----------------CCHH
T ss_conf 5302113----------4543364-4776766789999985899898768999-99985-----------------5499
Q ss_pred HHHHHHHHHHHHHHHHHHHHCHHHHHCCCC
Q ss_conf 999999999999999998516233401333
Q 000266 841 LVKKYFKASNYGMMKVLAKMGISTLASYKG 870 (1760)
Q Consensus 841 ~~~ny~~Ai~~GilKVMSKMGISTl~SY~G 870 (1760)
.+..+++-+...|..+|-=+|..+++..+-
T Consensus 318 gv~~~l~~l~~El~~~M~l~G~~~i~eL~~ 347 (353)
T d1p4ca_ 318 GVDEVLTLLKADIDRTLAQIGCPDITSLSP 347 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCBGGGCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHCCH
T ss_conf 999999999999999999858999788699
|
| >d2a4aa1 c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldolase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Fructose-1,6-bisphosphate aldolase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=95.76 E-value=0.014 Score=31.35 Aligned_cols=100 Identities=16% Similarity=0.132 Sum_probs=58.0
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCHH----H--HHH-HHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 999999997399992689981136889----9--999-999849979999239999899852221246888899999999
Q 000266 1141 AQLIYDLKNANPGARISVKLVSEAGVG----V--IAS-GVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETH 1213 (1760)
Q Consensus 1141 ~qlI~~Lr~~~p~~pI~VKlv~~~Gig----~--vA~-~aakaGAD~IvIsG~~GGTGaa~~~si~~~GlP~~~~L~ev~ 1213 (1760)
.+.|..++... ....+|.+.+.+.- . .+. .+.++|||+|--|-.-++.|+.+ .....+.++.
T Consensus 123 ~~~i~~~~~~~--~~~~lKVIlEt~~L~~~e~i~~~~~~~~~aGadFVKTSTG~~~~gat~---------~~v~~m~~~v 191 (256)
T d2a4aa1 123 TKLTQSVKKLL--TNKILKVIIEVGELKTEDLIIKTTLAVLNGNADFIKTSTGKVQINATP---------SSVEYIIKAI 191 (256)
T ss_dssp HHHHHHHHTTC--TTSEEEEECCHHHHCSHHHHHHHHHHHHTTTCSEEECCCSCSSCCCCH---------HHHHHHHHHH
T ss_pred HHHHHHHHHHC--CCCEEEEEEHHHHCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCH---------HHHHHHHHHH
T ss_conf 99999998624--687067654102127089999998999850238988456778889987---------9999999999
Q ss_pred HHH-HHCC-CCCCEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 998-8479-9984099986986799999999991998112
Q 000266 1214 QTL-VAND-LRGRTILQTDGQLKTGRDVAIAALLGAEEFG 1251 (1760)
Q Consensus 1214 q~L-~~~g-lr~rV~IiadGGIrtG~DV~KALaLGAdaVg 1251 (1760)
+.+ ..+. ..+++.|=++|||||..++.+.+.+||+.+|
T Consensus 192 ~e~~~~~~~~g~~~gVKASGGIrt~~~a~~~i~~g~~~lG 231 (256)
T d2a4aa1 192 KEYIKNNPEKNNKIGLKVSGGISDLNTASHYILLARRFLS 231 (256)
T ss_dssp HHHHHHCGGGTTCCEEEEESSCCSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 9998621245884568813787989999999999987616
|
| >d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=95.71 E-value=0.045 Score=27.75 Aligned_cols=108 Identities=19% Similarity=0.169 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9989999999997399992689981136889999999984997999923999-989985222124688889999999999
Q 000266 1137 IEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDG-GTGASRWTGIKNAGLPWELGLAETHQT 1215 (1760)
Q Consensus 1137 iEdL~qlI~~Lr~~~p~~pI~VKlv~~~Gig~vA~~aakaGAD~IvIsG~~G-GTGaa~~~si~~~GlP~~~~L~ev~q~ 1215 (1760)
..+..+.+...++. +..+++.. |-...+..+.+.+.+.|-...... |||.+... ..+ .-+....+.
T Consensus 102 ~~e~~~~i~~~~~~--gl~~i~cv----~~~~~~~~~~~~~~~iiAyEpvwaIGtg~~~~~-----~~~--~~i~~~i~~ 168 (224)
T d1hg3a_ 102 LADLEAAIRRAEEV--GLMTMVCS----NNPAVSAAVAALNPDYVAVEPPELIGTGIPVSK-----AKP--EVITNTVEL 168 (224)
T ss_dssp HHHHHHHHHHHHHH--TCEEEEEE----SSHHHHHHHHTTCCSEEEECCTTTTTTSCCTTT-----SCT--HHHHHHHHH
T ss_pred CCCHHHHHHHHHHC--CCCEEECH----HHHHHHHHHHHCCCCEEEECCHHHHCCCCCCCC-----HHH--HHHHHHHHH
T ss_conf 11115788899875--99412210----367888754201240688514676346667770-----356--666665556
Q ss_pred HHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 88479998409998698679999999999199811235167998
Q 000266 1216 LVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLIT 1259 (1760)
Q Consensus 1216 L~~~glr~rV~IiadGGIrtG~DV~KALaLGAdaVgiGta~L~a 1259 (1760)
+.. +...++|+..|||.++.|+.+++.+|+|+|.+|++.|-+
T Consensus 169 i~~--~~~~v~vlygGsV~~~n~~~~~~~~g~dGvLVGsAsl~a 210 (224)
T d1hg3a_ 169 VKK--VNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKA 210 (224)
T ss_dssp HHH--HCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTC
T ss_pred HHH--HCCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCEEECC
T ss_conf 553--145660698578698899999975799899972054348
|
| >d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Glycolate oxidase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=95.53 E-value=0.051 Score=27.31 Aligned_cols=142 Identities=15% Similarity=0.191 Sum_probs=96.0
Q ss_pred CCCCCHHHHHHHHHCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHH
Q ss_conf 77349999999996047997048999885079791239999999999999999859929998089988998643299988
Q 000266 688 GPLLSIEEMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRVAVSSLLAV 767 (1760)
Q Consensus 688 sPIL~~~el~~lk~~~~~~~~~~~id~tf~~~~g~~gL~~aL~~l~~eA~~Av~~G~~iiVLSDr~~~~~~~~ip~lLAv 767 (1760)
.|-++..+++.++... ....+..-.- + -..+..|++.|..-+++|......-.-+++++-+.
T Consensus 208 ~~~~~~~~v~~l~~~~----~~~~~~kg~~---~-----------~~da~~a~~~g~~~~~vsnhggr~ld~~~~~~~~l 269 (359)
T d1goxa_ 208 DRSLSWKDVAWLQTIT----SLPILVKGVI---T-----------AEDARLAVQHGAAGIIVSNHGARQLDYVPATIMAL 269 (359)
T ss_dssp CTTCCHHHHHHHHHHC----CSCEEEECCC---S-----------HHHHHHHHHTTCSEEEECCGGGTSSTTCCCHHHHH
T ss_pred CCCCCHHHHHHHHHHC----CCCEEEECCC---C-----------HHHHHHHHHCCCCCEECCCCCCCCCCCCCCHHHHC
T ss_conf 7889999999998615----6653220024---4-----------68889998706653220321110000000025445
Q ss_pred HHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 9999999973977710199950987867899999840800002---7999999999997499999999998999999999
Q 000266 768 GAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAIC---PYLATEAIWRLQVDGKIPPKASGEFHSKDELVKK 844 (1760)
Q Consensus 768 gaVh~~Li~~glR~~vsLIvesge~RevHh~a~LlGyGAdAV~---PYla~e~i~~~~~~g~~~~~~~~~~~~~~~~~~n 844 (1760)
-.+-+ -...++-||+ ||.+|.--|++..|.+|||+|- |+| +... ...++.+..
T Consensus 270 ~~i~~-----~~~~~~~iia-dGGIR~G~Di~KALaLGAd~vgigrp~L-~~la-----------------~~g~~gv~~ 325 (359)
T d1goxa_ 270 EEVVK-----AAQGRIPVFL-DGGVRRGTDVFKALALGAAGVFIGRPVV-FSLA-----------------AEGEAGVKK 325 (359)
T ss_dssp HHHHH-----HTTTSSCEEE-ESSCCSHHHHHHHHHHTCSEEEECHHHH-HHHH-----------------HHHHHHHHH
T ss_pred HHHHH-----CCCCCCCEEE-CCCCCCHHHHHHHHHCCCCEEEECHHHH-HHHH-----------------HCCHHHHHH
T ss_conf 56650-----3478621465-0575757789999984899898768999-9998-----------------434999999
Q ss_pred HHHHHHHHHHHHHHHHCHHHHHCCCCC
Q ss_conf 999999999999985162334013334
Q 000266 845 YFKASNYGMMKVLAKMGISTLASYKGA 871 (1760)
Q Consensus 845 y~~Ai~~GilKVMSKMGISTl~SY~GA 871 (1760)
+++-+.+.|...|-=+|..++...+-+
T Consensus 326 ~i~~l~~EL~~~M~l~G~~~i~~L~~~ 352 (359)
T d1goxa_ 326 VLQMMRDEFELTMALSGCRSLKEISRS 352 (359)
T ss_dssp HHHHHHHHHHHHHHHHTCSBTTTCCGG
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHCCHH
T ss_conf 999999999999998589997895995
|
| >d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]
Probab=95.34 E-value=0.059 Score=26.88 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=31.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC-CCCCCCCHHHHH
Q ss_conf 40999869867999999999919-981123516799
Q 000266 1224 RTILQTDGQLKTGRDVAIAALLG-AEEFGFSTAPLI 1258 (1760)
Q Consensus 1224 rV~IiadGGIrtG~DV~KALaLG-AdaVgiGta~L~ 1258 (1760)
.++|++.||+ +...+.+++.-| ||.|+|||+++.
T Consensus 307 ~~pv~~~Gg~-~~~~ae~~l~~G~~DlV~~gR~lia 341 (380)
T d1q45a_ 307 NGTFMSSGGF-NKELGMQAVQQGDADLVSYGRLFIA 341 (380)
T ss_dssp CSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred CCCEEECCCC-CHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 8858967998-9999999998699632455299887
|
| >d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Thermoproteus tenax [TaxId: 2271]
Probab=95.30 E-value=0.061 Score=26.80 Aligned_cols=109 Identities=20% Similarity=0.169 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCC-CCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 9998999999999739999268998113688999999998499799992399-998998522212468888999999999
Q 000266 1136 SIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHD-GGTGASRWTGIKNAGLPWELGLAETHQ 1214 (1760)
Q Consensus 1136 SiEdL~qlI~~Lr~~~p~~pI~VKlv~~~Gig~vA~~aakaGAD~IvIsG~~-GGTGaa~~~si~~~GlP~~~~L~ev~q 1214 (1760)
..++..+.+...++. +..+++-. |-...+..+.+.+.+.|...... .|||.++-. . ....+.+..+
T Consensus 99 ~~~e~~~~~~~~~~~--gl~~ivcv----ge~~~~~~~~~~~~~iIayep~waIGtg~~~~~--~-----~~~~i~~~i~ 165 (226)
T d1w0ma_ 99 KLNDLARLVAKAKSL--GLDVVVCA----PDPRTSLAAAALGPHAVAVEPPELIGTGRAVSR--Y-----KPEAIVETVG 165 (226)
T ss_dssp BHHHHHHHHHHHHHT--TCEEEEEE----SSHHHHHHHHHTCCSEEEECCGGGTTTSCCHHH--H-----CHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHC--CCEEEEEC----CCHHHHHHHHCCCCCEEEECCHHHCCCCCCCCH--H-----HHHHHHHHHH
T ss_conf 020168999999986--99899955----841776641024651366435332037889880--4-----5557665554
Q ss_pred HHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 988479998409998698679999999999199811235167998
Q 000266 1215 TLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLIT 1259 (1760)
Q Consensus 1215 ~L~~~glr~rV~IiadGGIrtG~DV~KALaLGAdaVgiGta~L~a 1259 (1760)
.+.+. ...++|+..|||.++.|+..++.+|+|+|.+|++.|-+
T Consensus 166 ~~~~~--~~~i~vlygGgV~~~n~~~~~~~~g~dGvLVGsA~l~a 208 (226)
T d1w0ma_ 166 LVSRH--FPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKA 208 (226)
T ss_dssp HHHHH--CTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTC
T ss_pred HHHCC--CCCCEEEEECCCCCHHHHHHHHCCCCCEEEECHHEECC
T ss_conf 31024--78822999437577679999743899889961310068
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=95.29 E-value=0.061 Score=26.78 Aligned_cols=104 Identities=15% Similarity=0.043 Sum_probs=59.5
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEE-EEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 99999999739999268998113688999999998499799-99239999899852221246888899999999998847
Q 000266 1141 AQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHV-LISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVAN 1219 (1760)
Q Consensus 1141 ~qlI~~Lr~~~p~~pI~VKlv~~~Gig~vA~~aakaGAD~I-vIsG~~GGTGaa~~~si~~~GlP~~~~L~ev~q~L~~~ 1219 (1760)
.++...++.. +...+.=..+...-..+.. +++..-.+| .||-. |-||.... ........+..+.+.
T Consensus 137 ~~~~~~~~~~--~l~~I~lvaPtt~~~Ri~~-i~~~a~gFiY~vs~~-GvTG~~~~-----~~~~~~~~i~~ik~~---- 203 (267)
T d1qopa_ 137 APFRQAALRH--NIAPIFICPPNADDDLLRQ-VASYGRGYTYLLSRS-GVTGAENR-----GALPLHHLIEKLKEY---- 203 (267)
T ss_dssp HHHHHHHHHT--TCEEECEECTTCCHHHHHH-HHHHCCSCEEEESSS-SCCCSSSC-----C--CCHHHHHHHHHT----
T ss_pred HHHHHHHHCC--CCEEEEEECCCCCHHHHHH-HHHHCCHHHHHHCCC-CCCCCCCC-----CCHHHHHHHHHHHHH----
T ss_conf 7887765125--7608997155662788888-875073355651033-56775323-----212478999887652----
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 99984099986986799999999991998112351679983
Q 000266 1220 DLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITL 1260 (1760)
Q Consensus 1220 glr~rV~IiadGGIrtG~DV~KALaLGAdaVgiGta~L~al 1260 (1760)
..+||.+--||++..||.+++.-|||+|-+|++++-.+
T Consensus 204 ---t~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSAivk~i 241 (267)
T d1qopa_ 204 ---HAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKII 241 (267)
T ss_dssp ---TCCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHHH
T ss_pred ---CCCCCEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHH
T ss_conf ---36873120165999999999864899999888999999
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.12 E-value=0.068 Score=26.44 Aligned_cols=103 Identities=11% Similarity=0.086 Sum_probs=70.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99998999999999739999268998113688999999998499799992399998998522212468888999999999
Q 000266 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQ 1214 (1760)
Q Consensus 1135 ySiEdL~qlI~~Lr~~~p~~pI~VKlv~~~Gig~vA~~aakaGAD~IvIsG~~GGTGaa~~~si~~~GlP~~~~L~ev~q 1214 (1760)
-+.+++..++...+.. +.-+.|-. .. ......+.++|++.|-|.+.+-.|- -......+ +...
T Consensus 136 L~~~~l~~l~~~a~~l--gl~~LvEv-h~---~~El~~a~~~~a~iIGINnRnL~t~----------~vd~~~~~-~L~~ 198 (247)
T d1a53a_ 136 LTERELESLLEYARSY--GMEPLIEI-ND---ENDLDIALRIGARFIGINSRDLETL----------EINKENQR-KLIS 198 (247)
T ss_dssp SCHHHHHHHHHHHHTT--TCCCEEEE-CS---HHHHHHHHHTTCSEEEEESBCTTTC----------CBCHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHH--HHHHHHHC-CC---HHHHHHHHHCCCCEEEEECCCHHHH----------HHHHHHHH-HHHH
T ss_conf 0178889999999998--65677615-89---9999999817998376634575654----------32046899-9985
Q ss_pred HHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 988479998409998698679999999999199811235167998
Q 000266 1215 TLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLIT 1259 (1760)
Q Consensus 1215 ~L~~~glr~rV~IiadGGIrtG~DV~KALaLGAdaVgiGta~L~a 1259 (1760)
. +...+.+++.+||.+..|+.+...+|+++|.+|+++|-+
T Consensus 199 ~-----ip~~~~~IaESGI~t~~dv~~l~~~G~davLIGeaLmk~ 238 (247)
T d1a53a_ 199 M-----IPSNVVKVAESGISERNEIEELRKLGVNAFLIGSSLMRN 238 (247)
T ss_dssp H-----SCTTSEEEEESCCCCHHHHHHHHHTTCCEEEECHHHHHC
T ss_pred H-----CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECHHHCCC
T ss_conf 2-----888986999638999999999997799999989887689
|
| >d1vcva1 c.1.10.1 (A:1-226) Deoxyribose-phosphate aldolase DeoC {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.04 E-value=0.028 Score=29.15 Aligned_cols=112 Identities=12% Similarity=0.010 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCH------HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 998999999999739999268998113688------99999999849979999239999899852221246888899999
Q 000266 1137 IEDLAQLIYDLKNANPGARISVKLVSEAGV------GVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLA 1210 (1760)
Q Consensus 1137 iEdL~qlI~~Lr~~~p~~pI~VKlv~~~Gi------g~vA~~aakaGAD~IvIsG~~GGTGaa~~~si~~~GlP~~~~L~ 1210 (1760)
++.+.+.|..++.... ...+|.+.+.+. ...+..+.++|||+|--|-.=++.|+... .....| .+..-+.
T Consensus 97 ~~~v~~ei~~v~~~~~--~~~lKVIlEt~~L~~~ei~~~~~~~~~aGadFIKTSTGf~~~g~~~~-~~~~~~-at~~~~~ 172 (226)
T d1vcva1 97 WAEVRRDLISVVGAAG--GRVVKVITEEPYLRDEERYTLYDIIAEAGAHFIKSSTGFAEEAYAAR-QGNPVH-STPERAA 172 (226)
T ss_dssp HHHHHHHHHHHHHHTT--TSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCCSCCCHHHHHH-TTCCSS-CCHHHHH
T ss_pred HHHHHHHHHHHHHCCC--CCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC-CCCCCC-CCHHHHH
T ss_conf 9999999999986158--98588873245467799999999999719661661466567765333-467666-7599999
Q ss_pred HHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHC-------CCCCCCCCH
Q ss_conf 99999884799984099986986799999999991-------998112351
Q 000266 1211 ETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALL-------GAEEFGFST 1254 (1760)
Q Consensus 1211 ev~q~L~~~glr~rV~IiadGGIrtG~DV~KALaL-------GAdaVgiGt 1254 (1760)
.+.+..... ..++-|=++|||||..++...+.+ ||..+|-.+
T Consensus 173 ~~~~~~~~~--g~~vgiKasGGIrt~~~A~~~i~a~~~~~~~ga~RiGtSs 221 (226)
T d1vcva1 173 AIARYIKEK--GYRLGVKMAGGIRTREQAKAIVDAIGWGEDPARVRLGTST 221 (226)
T ss_dssp HHHHHHHHH--TCCCEEEEESSCCSHHHHHHHHHHHCSCSCTTTEEEEESC
T ss_pred HHHHHHHHH--CCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCC
T ss_conf 999999986--9862697768979999999999865227888987973687
|
| >d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: PdxS-like domain: Pyridoxal biosynthesis lyase PdxS species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.52 E-value=0.04 Score=28.09 Aligned_cols=53 Identities=25% Similarity=0.218 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 46888899999999998847999840999869867999999999919981123516799
Q 000266 1200 NAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1200 ~~GlP~~~~L~ev~q~L~~~glr~rV~IiadGGIrtG~DV~KALaLGAdaVgiGta~L~ 1258 (1760)
..|.|.+ .+.++++. -|-.|++++||||.|+.|++.++-||+|+|.+|++..-
T Consensus 171 ~lg~p~~-l~~~v~~~-----g~l~v~~~~~~Gi~tpadaa~~MelG~dgV~v~s~I~~ 223 (254)
T d1znna1 171 QLGAPVE-VLREIKRL-----GRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFK 223 (254)
T ss_dssp HHTCCHH-HHHHHHHH-----TSCSSEEEEESSCCSHHHHHHHHHTTCSEEEECGGGGG
T ss_pred HHCCCHH-HHHHHHHH-----CCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCHHHC
T ss_conf 6289469-99999985-----78784177127878745699999737988987504304
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.53 E-value=0.2 Score=23.14 Aligned_cols=109 Identities=11% Similarity=0.031 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99899999999973999926899811368899999999849979999239999899852221246888899999999998
Q 000266 1137 IEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTL 1216 (1760)
Q Consensus 1137 iEdL~qlI~~Lr~~~p~~pI~VKlv~~~Gig~vA~~aakaGAD~IvIsG~~GGTGaa~~~si~~~GlP~~~~L~ev~q~L 1216 (1760)
+|+..++...+++. +...+.=..+...-..+ ..+++..-.+|-+-..-|-||... ..|. .+.+..+.+
T Consensus 119 ~eE~~~~~~~~~~~--gl~~I~lvaPtt~~~ri-~~i~~~s~gFiY~vs~~GvTG~~~-------~~~~--~~~~~v~~v 186 (248)
T d1geqa_ 119 VFHAKEFTEIAREE--GIKTVFLAAPNTPDERL-KVIDDMTTGFVYLVSLYGTTGARE-------EIPK--TAYDLLRRA 186 (248)
T ss_dssp GGGHHHHHHHHHHH--TCEEEEEECTTCCHHHH-HHHHHHCSSEEEEECCC--------------CCCH--HHHHHHHHH
T ss_pred HHHHHHHHHHCCCC--CCCEEEEECCCCHHHHH-HHHHHCCCCEEEEEECCCCCCCCH-------HHHH--HHHHHHHHH
T ss_conf 77888987650246--85268886453415788-988853887289984146654201-------1335--677888887
Q ss_pred HHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 84799984099986986799999999991998112351679983
Q 000266 1217 VANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITL 1260 (1760)
Q Consensus 1217 ~~~glr~rV~IiadGGIrtG~DV~KALaLGAdaVgiGta~L~al 1260 (1760)
++. .++||.+--||+++.|+.+++.-|||+|-+|++++-.+
T Consensus 187 k~~---t~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSaiv~~i 227 (248)
T d1geqa_ 187 KRI---CRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKII 227 (248)
T ss_dssp HHH---CSSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHHH
T ss_pred HHH---CCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHH
T ss_conf 650---36414661364999999999865999999888999999
|
| >d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Morphinone reductase species: Pseudomonas putida [TaxId: 303]
Probab=92.39 E-value=0.21 Score=23.02 Aligned_cols=102 Identities=12% Similarity=0.071 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCC---CH-----H----HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 9999999997399992689981136---88-----9----9999999849979999239999899852221246888899
Q 000266 1140 LAQLIYDLKNANPGARISVKLVSEA---GV-----G----VIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWEL 1207 (1760)
Q Consensus 1140 L~qlI~~Lr~~~p~~pI~VKlv~~~---Gi-----g----~vA~~aakaGAD~IvIsG~~GGTGaa~~~si~~~GlP~~~ 1207 (1760)
+.+.|..+|+..++-.|++++.+.. |. . ..+..+...|+|.+.++...-- + .....|.-.
T Consensus 216 ~~EIi~aIR~~vg~~~v~~r~~~~~~~~g~~~~~~~~~~~~~~~~ld~~~i~~~~~~~~~~~-~-------~~~~~~~~~ 287 (374)
T d1gwja_ 216 PLEVVDAVAEVFGPERVGIRLTPFLELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWI-G-------GDITYPEGF 287 (374)
T ss_dssp HHHHHHHHHHHHCGGGEEEEECTTCCCTTCCCSCHHHHHHHHHHHHHHHTCSEEEEECSCBT-T-------BCCCCCTTH
T ss_pred HHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCC-C-------CCCCHHHHH
T ss_conf 78899989988387532255531002368765324788887641311047227775157645-7-------886524999
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCC-CCCCCCCHHHHH
Q ss_conf 999999998847999840999869867999999999919-981123516799
Q 000266 1208 GLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG-AEEFGFSTAPLI 1258 (1760)
Q Consensus 1208 ~L~ev~q~L~~~glr~rV~IiadGGIrtG~DV~KALaLG-AdaVgiGta~L~ 1258 (1760)
...+.+. -+++|++.|++ +...+.++|.-| ||.|+|||++|.
T Consensus 288 -~~~i~~~-------~~~pvi~~G~i-~~~~ae~~l~~g~aDlV~~gR~~ia 330 (374)
T d1gwja_ 288 -REQMRQR-------FKGGLIYCGNY-DAGRAQARLDDNTADAVAFGRPFIA 330 (374)
T ss_dssp -HHHHHHH-------CCSEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred -HHHHHHH-------CCCCEEEECCC-CHHHHHHHHHCCCCCEEHHHHHHHH
T ss_conf -9999987-------38878997895-9999999998699748446699987
|
| >d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Old yellow enzyme (OYE) species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]
Probab=91.48 E-value=0.012 Score=31.72 Aligned_cols=120 Identities=15% Similarity=0.175 Sum_probs=62.7
Q ss_pred CCCCCC--CCC--CHHH----HHHHHHHHHHHCCCCCEEEEECCCC----CH-----HHH------HHHHHHC-----CC
Q ss_conf 899999--999--9998----9999999997399992689981136----88-----999------9999984-----99
Q 000266 1127 SPPPHH--DIY--SIED----LAQLIYDLKNANPGARISVKLVSEA----GV-----GVI------ASGVVKG-----HA 1178 (1760)
Q Consensus 1127 sP~~h~--diy--SiEd----L~qlI~~Lr~~~p~~pI~VKlv~~~----Gi-----g~v------A~~aaka-----GA 1178 (1760)
||-..+ |-| |+|. +.+.|..+|+..+.-||+||+.+.- +. ... +..+.+. ..
T Consensus 203 Sp~tN~RtDeYGGSlENR~Rf~~Eii~aIR~~vg~~~IgvRls~~d~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~ 282 (399)
T d1oyaa_ 203 DPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMSGGAETGIVAQYAYVAGELEKRAKAGKRL 282 (399)
T ss_dssp CTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCGGGSTTHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCEEEECHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 13035665224765665457799998754340222574478530220256677410005778999998898743245434
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHC-CCCCCCCCHHH
Q ss_conf 79999239999899852221246888899999-99999884799984099986986799999999991-99811235167
Q 000266 1179 DHVLISGHDGGTGASRWTGIKNAGLPWELGLA-ETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALL-GAEEFGFSTAP 1256 (1760)
Q Consensus 1179 D~IvIsG~~GGTGaa~~~si~~~GlP~~~~L~-ev~q~L~~~glr~rV~IiadGGIrtG~DV~KALaL-GAdaVgiGta~ 1256 (1760)
+.+.++...- ..+. +.....++..... .+.+. -+++|++.|+|.+..++.+.++- +||.|+|||++
T Consensus 283 ~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~ik~~-------~~~PVi~~G~i~~~~~~~~~i~~~~aDlV~~gR~l 350 (399)
T d1oyaa_ 283 AFVHLVEPRV---TNPF--LTEGEGEYEGGSNDFVYSI-------WKGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFF 350 (399)
T ss_dssp SEEEEECTTC---SCTT--SCTTSSCCCSCCTTHHHHH-------CCSCEEEESSCTTCHHHHHHHTTSTTEEEECCHHH
T ss_pred CCEEEECCCC---CCCC--CCCCCCCCCHHHHHHHHHH-------HCCCEEEECCCCCHHHHHHHHHCCCCEEHHHHHHH
T ss_conf 4112214667---7755--4544321112689999998-------29988997898986999999975998184887999
Q ss_pred HH
Q ss_conf 99
Q 000266 1257 LI 1258 (1760)
Q Consensus 1257 L~ 1258 (1760)
|.
T Consensus 351 ia 352 (399)
T d1oyaa_ 351 IS 352 (399)
T ss_dssp HH
T ss_pred HH
T ss_conf 97
|
| >d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.45 E-value=0.27 Score=22.31 Aligned_cols=91 Identities=14% Similarity=0.170 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 99999999973999926899811368899999999849979999239999899852221246888899999999998847
Q 000266 1140 LAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVAN 1219 (1760)
Q Consensus 1140 L~qlI~~Lr~~~p~~pI~VKlv~~~Gig~vA~~aakaGAD~IvIsG~~GGTGaa~~~si~~~GlP~~~~L~ev~q~L~~~ 1219 (1760)
+.+.|..+|...|..+|.|-. ..-.-+..++++|+|.|.+|+.. | .-+.++.+.+...
T Consensus 66 i~~~i~~~k~~~~~~~I~VEv----~s~~q~~~a~~~~~diImLDN~s----------------p--~~~k~~v~~~~~~ 123 (169)
T d1qpoa1 66 VVDALRAVRNAAPDLPCEVEV----DSLEQLDAVLPEKPELILLDNFA----------------V--WQTQTAVQRRDSR 123 (169)
T ss_dssp HHHHHHHHHHHCTTSCEEEEE----SSHHHHHHHGGGCCSEEEEETCC----------------H--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCEEEEE----CCHHHHHHHHHCCCCEEEECCCC----------------H--HHHHHHHHHHHCC
T ss_conf 055434566526887569983----42777656653388199963768----------------3--7689999986365
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHH
Q ss_conf 999840999869867999999999919981123516
Q 000266 1220 DLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1220 glr~rV~IiadGGIrtG~DV~KALaLGAdaVgiGta 1255 (1760)
+..+.+-++||| +-..+..-...|.|.+.+|..
T Consensus 124 --~~~i~lEaSGgI-~~~ni~~ya~~GvD~IS~gal 156 (169)
T d1qpoa1 124 --APTVMLESSGGL-SLQTAATYAETGVDYLAVGAL 156 (169)
T ss_dssp --CTTCEEEEESSC-CTTTHHHHHHTTCSEEECGGG
T ss_pred --CCEEEEEEECCC-CHHHHHHHHHCCCCEEECCCC
T ss_conf --870699976797-989999999739999987824
|
| >d1ecfa2 d.153.1.1 (A:1-249) Glutamine PRPP amidotransferase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Class II glutamine amidotransferases domain: Glutamine PRPP amidotransferase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.20 E-value=0.15 Score=24.12 Aligned_cols=35 Identities=31% Similarity=0.561 Sum_probs=28.0
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 658999984798760749999999841545677789999998432414
Q 000266 115 CGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILV 162 (1760)
Q Consensus 115 CGVGfia~~~g~~sh~iv~~al~~L~~M~HRGa~g~d~~tGDGAGil~ 162 (1760)
|||..+...+ .+....+.+|.+|+|||- |+|||.+
T Consensus 1 CGI~G~~~~~-----~~~~~l~~gL~~LqhRG~--------DsaGIa~ 35 (249)
T d1ecfa2 1 CGIVGIAGVM-----PVNQSIYDALTVLQHRGQ--------DAAGIIT 35 (249)
T ss_dssp CEEEEEECSS-----CCHHHHHHHHHHTGGGCC--------SEEEEEE
T ss_pred CEEEEEECCH-----HHHHHHHHHHHHHHCCCC--------CEEEEEE
T ss_conf 9799998675-----149999999998713483--------7138999
|
| >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]
Probab=90.11 E-value=0.35 Score=21.49 Aligned_cols=76 Identities=14% Similarity=-0.018 Sum_probs=50.8
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999999849979999239999899852221246888-899999999998847999840999869867999999999919
Q 000266 1168 VIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLP-WELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG 1246 (1760)
Q Consensus 1168 ~vA~~aakaGAD~IvIsG~~GGTGaa~~~si~~~GlP-~~~~L~ev~q~L~~~glr~rV~IiadGGIrtG~DV~KALaLG 1246 (1760)
..+..+.+.|+|+|.++---- |. -+.-..| ....+.++.+. .++||+|-||| +..++...+.+|
T Consensus 110 ~e~~~a~~~g~DYi~~gpvf~-T~------tk~~~~~~g~~~l~~~~~~-------~~~Pv~AiGGI-~~~ni~~~~~~G 174 (206)
T d1xi3a_ 110 EEALEAEKKGADYLGAGSVFP-TK------TKEDARVIGLEGLRKIVES-------VKIPVVAIGGI-NKDNAREVLKTG 174 (206)
T ss_dssp HHHHHHHHHTCSEEEEECSSC-C----------CCCCCHHHHHHHHHHH-------CSSCEEEESSC-CTTTHHHHHTTT
T ss_pred HHHHHHHHCCCCEEEECCCCC-CC------CCCCCCCCCHHHHHHHHHH-------CCCCEEEECCC-CHHHHHHHHHHC
T ss_conf 999988866988798522334-55------6654542237999998872-------68988997799-999999999839
Q ss_pred CCCCCCCHHHHH
Q ss_conf 981123516799
Q 000266 1247 AEEFGFSTAPLI 1258 (1760)
Q Consensus 1247 AdaVgiGta~L~ 1258 (1760)
|++|.+.++++-
T Consensus 175 a~gvAvis~I~~ 186 (206)
T d1xi3a_ 175 VDGIAVISAVMG 186 (206)
T ss_dssp CSEEEESHHHHT
T ss_pred CCEEEEHHHHHC
T ss_conf 989997599777
|
| >d1xffa_ d.153.1.1 (A:) Glucosamine 6-phosphate synthase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Class II glutamine amidotransferases domain: Glucosamine 6-phosphate synthase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.95 E-value=0.14 Score=24.32 Aligned_cols=35 Identities=34% Similarity=0.424 Sum_probs=28.3
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 658999984798760749999999841545677789999998432414
Q 000266 115 CGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILV 162 (1760)
Q Consensus 115 CGVGfia~~~g~~sh~iv~~al~~L~~M~HRGa~g~d~~tGDGAGil~ 162 (1760)
|||.++.+.+ .+.+..+.+|.+|+|||- |+|||.+
T Consensus 1 CGI~G~~~~~-----~~~~~l~~~l~~lqhRG~--------Ds~Gi~~ 35 (238)
T d1xffa_ 1 CGIVGAIAQR-----DVAEILLEGLRRLEYRGY--------DSAGLAV 35 (238)
T ss_dssp CEEEEEECSS-----CCHHHHHHHHHHHGGGCC--------SEEEEEE
T ss_pred CEEEEEECCH-----HHHHHHHHHHHHHCCCCC--------CCCCEEE
T ss_conf 9799998982-----279999999987335585--------5068899
|
| >d1gph12 d.153.1.1 (1:1-234) Glutamine PRPP amidotransferase, N-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Class II glutamine amidotransferases domain: Glutamine PRPP amidotransferase, N-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=89.32 E-value=0.18 Score=23.42 Aligned_cols=35 Identities=31% Similarity=0.416 Sum_probs=27.4
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 658999984798760749999999841545677789999998432414
Q 000266 115 CGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILV 162 (1760)
Q Consensus 115 CGVGfia~~~g~~sh~iv~~al~~L~~M~HRGa~g~d~~tGDGAGil~ 162 (1760)
|||..+...+ .+......+|..|+|||- |+|||.+
T Consensus 1 CGI~G~~~~~-----~~~~~~~~~l~~lqhRG~--------Ds~Gi~~ 35 (234)
T d1gph12 1 CGVFGIWGHE-----EAPQITYYGLHSLQHRGQ--------EGAGIVA 35 (234)
T ss_dssp CEEEEEESCT-----THHHHHHHHHHTTGGGCS--------SCEEEEE
T ss_pred CEEEEEECCC-----CCHHHHHHHHHHHHCCCC--------CCCCEEE
T ss_conf 9699999896-----568999999987616784--------5373899
|
| >d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]
Probab=88.93 E-value=0.42 Score=20.90 Aligned_cols=103 Identities=11% Similarity=0.054 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCC-----CH--H-----HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 9999999997399992689981136-----88--9-----9999999849979999239999899852221246888899
Q 000266 1140 LAQLIYDLKNANPGARISVKLVSEA-----GV--G-----VIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWEL 1207 (1760)
Q Consensus 1140 L~qlI~~Lr~~~p~~pI~VKlv~~~-----Gi--g-----~vA~~aakaGAD~IvIsG~~GGTGaa~~~si~~~GlP~~~ 1207 (1760)
+.+.|..+|+..++-+|+++..+.. |. . ..+..+...+++.+.++...-....... ...+.
T Consensus 211 ~~Eii~aIr~~~g~~~i~~r~s~~~~~~~~g~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~-----~~~~~-- 283 (364)
T d1icpa_ 211 ALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTAWEKI-----ECTES-- 283 (364)
T ss_dssp HHHHHHHHHHHHCGGGEEEEECTTCCTTTCCCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC-----------CCCC--
T ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC-----CCHHH--
T ss_conf 89876542012488646688604322467767516777889987752032245665158655455455-----44788--
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCC-CCCCCCCHHHHH
Q ss_conf 999999998847999840999869867999999999919-981123516799
Q 000266 1208 GLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG-AEEFGFSTAPLI 1258 (1760)
Q Consensus 1208 ~L~ev~q~L~~~glr~rV~IiadGGIrtG~DV~KALaLG-AdaVgiGta~L~ 1258 (1760)
...+.+. ...++++.|++ +..++.++++-| ||.|+|||+++.
T Consensus 284 -~~~i~~~-------~~~~vi~~g~~-~~~~ae~~l~~g~aD~V~~gR~~ia 326 (364)
T d1icpa_ 284 -LVPMRKA-------YKGTFIVAGGY-DREDGNRALIEDRADLVAYGRLFIS 326 (364)
T ss_dssp -SHHHHHH-------CCSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred -HHHHHHH-------CCCCEEEECCC-CHHHHHHHHHCCCCCEEHHHHHHHH
T ss_conf -9999986-------47878997898-9999999998699765056799997
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=88.43 E-value=0.45 Score=20.68 Aligned_cols=103 Identities=16% Similarity=0.134 Sum_probs=67.5
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 99999998999999999739999268998113688999999998499799992399998998522212468888999999
Q 000266 1132 HDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAE 1211 (1760)
Q Consensus 1132 ~diySiEdL~qlI~~Lr~~~p~~pI~VKlv~~~Gig~vA~~aakaGAD~IvIsG~~GGTGaa~~~si~~~GlP~~~~L~e 1211 (1760)
|.++++++..+.+...+....+..+.+-..........+..+.++|+|.|+||-..|-. .+ ....+.+
T Consensus 74 hr~~~~~e~~~~~~~~~~~~~~~~v~aavGv~~~~~er~~~l~~agvd~ivID~A~G~s--------~~----~~~~i~~ 141 (365)
T d1zfja1 74 HKNMSITEQAEEVRKVKRSEGRLLVAAAVGVTSDTFERAEALFEAGADAIVIDTAHGHS--------AG----VLRKIAE 141 (365)
T ss_dssp CCSSCHHHHHHHHHHHHHHTSCBCCEEEECSSTTHHHHHHHHHHHTCSEEEECCSCTTC--------HH----HHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCC--------CC----HHHHHHH
T ss_conf 48667899887766544303756999994468127789999998699889997886554--------32----1478899
Q ss_pred HHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 999988479998409998698679999999999199811235
Q 000266 1212 THQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFS 1253 (1760)
Q Consensus 1212 v~q~L~~~glr~rV~IiadGGIrtG~DV~KALaLGAdaVgiG 1253 (1760)
+.+. ...++|+ .|.+.|...+...+-.|||+|-+|
T Consensus 142 ik~~------~~~~~iI-aGNV~T~e~a~~L~~aGaD~VkVG 176 (365)
T d1zfja1 142 IRAH------FPNRTLI-AGNIATAEGARALYDAGVDVVKVG 176 (365)
T ss_dssp HHHH------CSSSCEE-EEEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHH------CCCCCEE-ECCCCCHHHHHHHHHCCCCEEEEE
T ss_conf 9865------8876444-113434899999986697637864
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Probab=87.89 E-value=0.49 Score=20.45 Aligned_cols=103 Identities=17% Similarity=0.112 Sum_probs=58.9
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 99999999739999268998113688999999998499799992399998998522212468888999999999988479
Q 000266 1141 AQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVAND 1220 (1760)
Q Consensus 1141 ~qlI~~Lr~~~p~~pI~VKlv~~~Gig~vA~~aakaGAD~IvIsG~~GGTGaa~~~si~~~GlP~~~~L~ev~q~L~~~g 1220 (1760)
..+...+++. +..++.=..+...-..+ ..+++..-.+|-+-..-|-||.... ++ ..+.+..+.++..
T Consensus 134 ~~~~~~~~~~--gl~~I~lvsPtT~~eRi-~~i~~~s~GFIY~Vs~~GvTG~~~~-------~~--~~~~~~i~~ik~~- 200 (271)
T d1ujpa_ 134 PGLVRLAQEI--GLETVFLLAPTSTDARI-ATVVRHATGFVYAVSVTGVTGMRER-------LP--EEVKDLVRRIKAR- 200 (271)
T ss_dssp HHHHHHHHHH--TCEEECEECTTCCHHHH-HHHHTTCCSCEEEECC---------------------CCHHHHHHHHTT-
T ss_pred HHHHHHHHCC--CCCEEECCCCCCCHHHH-HHHHHHCCCHHHHHCCCCCCCCCCC-------CH--HHHHHHHHHHHCC-
T ss_conf 8888776314--64502103777606899-9999848312112035676675433-------31--7799998765115-
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 9984099986986799999999991998112351679983
Q 000266 1221 LRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITL 1260 (1760)
Q Consensus 1221 lr~rV~IiadGGIrtG~DV~KALaLGAdaVgiGta~L~al 1260 (1760)
.++|+.+-=||++..|+.++ -|||+|-+|++++-.+
T Consensus 201 --t~~Pv~vGFGIs~~e~v~~~--~~ADGvIVGSAiV~~i 236 (271)
T d1ujpa_ 201 --TALPVAVGFGVSGKATAAQA--AVADGVVVGSALVRAL 236 (271)
T ss_dssp --CCSCEEEESCCCSHHHHHHH--TTSSEEEECHHHHHHH
T ss_pred --CCCCEEEECCCCCHHHHHHH--CCCCEEEECHHHHHHH
T ss_conf --66875874787988999873--7799899868999999
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=87.75 E-value=0.5 Score=20.39 Aligned_cols=87 Identities=13% Similarity=-0.025 Sum_probs=54.3
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 99999973999926899811368899999999849979999239999899852221246888899999999998847999
Q 000266 1143 LIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLR 1222 (1760)
Q Consensus 1143 lI~~Lr~~~p~~pI~VKlv~~~Gig~vA~~aakaGAD~IvIsG~~GGTGaa~~~si~~~GlP~~~~L~ev~q~L~~~glr 1222 (1760)
++...+.. +.|++ -++.+ -+-+..+.++|+|.+-+-- +. -.|.. -.+.+.. ..
T Consensus 95 v~~~~~~~--~i~~i-PGv~T---psEi~~A~~~G~~~lK~fP--a~----------~~G~~-------~lk~l~~--p~ 147 (202)
T d1wa3a1 95 ISQFCKEK--GVFYM-PGVMT---PTELVKAMKLGHTILKLFP--GE----------VVGPQ-------FVKAMKG--PF 147 (202)
T ss_dssp HHHHHHHH--TCEEE-CEECS---HHHHHHHHHTTCCEEEETT--HH----------HHHHH-------HHHHHHT--TC
T ss_pred HHHHHHHC--CCCEE-CCCCC---HHHHHHHHHCCCCEEEECC--HH----------HCCHH-------HHHHHHC--CC
T ss_conf 99999865--99561-78186---8899999977999897543--32----------15988-------9999967--22
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 84099986986799999999991998112351679
Q 000266 1223 GRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1223 ~rV~IiadGGIrtG~DV~KALaLGAdaVgiGta~L 1257 (1760)
..++++..||| +..++...+.+||.+|++|+...
T Consensus 148 p~i~~iptGGI-~~~n~~~~l~aga~avg~Gs~l~ 181 (202)
T d1wa3a1 148 PNVKFVPTGGV-NLDNVCEWFKAGVLAVGVGSALV 181 (202)
T ss_dssp TTCEEEEBSSC-CTTTHHHHHHHTCSCEEECHHHH
T ss_pred CCCCEEEECCC-CHHHHHHHHHCCCEEEEECHHHC
T ss_conf 47847865799-98889999978992999835624
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=86.68 E-value=0.57 Score=19.99 Aligned_cols=74 Identities=16% Similarity=0.039 Sum_probs=43.6
Q ss_pred HHHHHHHHCCCCEEEEECC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999999849979999239-999899852221246888899999999998847999840999869867999999999919
Q 000266 1168 VIASGVVKGHADHVLISGH-DGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG 1246 (1760)
Q Consensus 1168 ~vA~~aakaGAD~IvIsG~-~GGTGaa~~~si~~~GlP~~~~L~ev~q~L~~~glr~rV~IiadGGIrtG~DV~KALaLG 1246 (1760)
.....+.+.|+.-|++-.- --||. .|+.. ..+.++.+. ..+|++++||+++-.|+.++...|
T Consensus 155 ~~~~~~~~~g~~eii~tdI~~dGt~---------~G~d~-~ll~~i~~~-------~~~pvi~~GGv~s~~di~~l~~~g 217 (253)
T d1thfd_ 155 DWVVEVEKRGAGEILLTSIDRDGTK---------SGYDT-EMIRFVRPL-------TTLPIIASGGAGKMEHFLEAFLAG 217 (253)
T ss_dssp HHHHHHHHTTCSEEEEEETTTTTSC---------SCCCH-HHHHHHGGG-------CCSCEEEESCCCSHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCEEEEEEECCCCCC---------CCCCC-CCCCCCCCC-------CCCEEEEECCCCCHHHHHHHHHCC
T ss_conf 9999997555987999986245766---------77541-111110245-------466079844889999999999789
Q ss_pred CCCCCCCHHHHH
Q ss_conf 981123516799
Q 000266 1247 AEEFGFSTAPLI 1258 (1760)
Q Consensus 1247 AdaVgiGta~L~ 1258 (1760)
+++|.+|+++..
T Consensus 218 ~~gvivgsal~~ 229 (253)
T d1thfd_ 218 ADAALAASVFHF 229 (253)
T ss_dssp CSEEEESHHHHT
T ss_pred CCEEEECHHHHC
T ss_conf 979998148776
|
| >d1l6wa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Escherichia coli [TaxId: 562]
Probab=83.85 E-value=0.76 Score=19.10 Aligned_cols=101 Identities=19% Similarity=0.065 Sum_probs=69.5
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 99999997399992689981136889999999984997999923999989985222124688889999999999884799
Q 000266 1142 QLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDL 1221 (1760)
Q Consensus 1142 qlI~~Lr~~~p~~pI~VKlv~~~Gig~vA~~aakaGAD~IvIsG~~GGTGaa~~~si~~~GlP~~~~L~ev~q~L~~~gl 1221 (1760)
+.+..|... +.++-+-.+-+. .-+..++++|+++|.. +-|+ ++++|.+....+.++++.+..++.
T Consensus 94 ~ai~~L~~~--Gi~vn~Tavfs~---~Qa~~Aa~aga~yvsp--y~gR--------~~d~g~dg~~~i~~~~~~~~~~~~ 158 (220)
T d1l6wa_ 94 AAIKMLKAE--GIPTLGTAVYGA---AQGLLSALAGAEYVAP--YVNR--------IDAQGGSGIQTVTDLHQLLKMHAP 158 (220)
T ss_dssp HHHHHHHHH--TCCEEEEEECSH---HHHHHHHHHTCSEEEE--BHHH--------HHHTTSCHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHC--CCCHHHHHCCCH---HHHHHHHHCCCCEEEE--EEEE--------HHHCCCCCHHHHHHHHHHHHHCCC
T ss_conf 122210220--400144531447---8888764147717863--2330--------232246776889999999974188
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 984099986986799999999991998112351679983
Q 000266 1222 RGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITL 1260 (1760)
Q Consensus 1222 r~rV~IiadGGIrtG~DV~KALaLGAdaVgiGta~L~al 1260 (1760)
+..|++ +.+|+-.++..++.+|+|.+-+.-..+-.+
T Consensus 159 --~tkIl~-AS~R~~~~v~~~~~~G~d~iTip~~v~~~l 194 (220)
T d1l6wa_ 159 --QAKVLA-ASFKTPRQALDCLLAGCESITLPLDVAQQM 194 (220)
T ss_dssp --TCEEEE-BCCSSHHHHHHHHHTTCSEEEECHHHHHHT
T ss_pred --CCEEEE-HHCCCHHHHHHHHHCCCCEEECCHHHHHHH
T ss_conf --726964-212889999999986999998399999999
|
| >d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: 3-keto-L-gulonate 6-phosphate decarboxylase species: Escherichia coli [TaxId: 562]
Probab=83.12 E-value=0.81 Score=18.90 Aligned_cols=103 Identities=11% Similarity=-0.035 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEE-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 998999999999739999268998113688999999998499799992-3999989985222124688889999999999
Q 000266 1137 IEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLIS-GHDGGTGASRWTGIKNAGLPWELGLAETHQT 1215 (1760)
Q Consensus 1137 iEdL~qlI~~Lr~~~p~~pI~VKlv~~~Gig~vA~~aakaGAD~IvIs-G~~GGTGaa~~~si~~~GlP~~~~L~ev~q~ 1215 (1760)
.+.+...+...++. +..+.+-..+... ...+....+.+++.+++. +.+.|.. ...+....+..+++.
T Consensus 90 ~~~~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~---------~~~~~~~~l~~i~~~ 157 (213)
T d1q6oa_ 90 INTAKGALDVAKEF--NGDVQIELTGYWT-WEQAQQWRDAGIGQVVYHRSRDAQAA---------GVAWGEADITAIKRL 157 (213)
T ss_dssp HHHHHHHHHHHHHT--TCEEEEEECSCCC-HHHHHHHHHTTCCEEEEECCHHHHHT---------TCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHC--CCCEECCCCCCCC-HHHHHHHHHHHHHHHHHHHHCCCCCC---------CEECCHHHHHHHHHH
T ss_conf 16899999999971--9820126589999-99999999867889898870246858---------865778899999986
Q ss_pred HHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 884799984099986986799999999991998112351679
Q 000266 1216 LVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1216 L~~~glr~rV~IiadGGIrtG~DV~KALaLGAdaVgiGta~L 1257 (1760)
.. ..+++.++||++ ..++-++...|||.+-+||+..
T Consensus 158 ~~-----~~~~i~~~gGi~-~~~~~~~~~~Gad~iVVGr~I~ 193 (213)
T d1q6oa_ 158 SD-----MGFKVTVTGGLA-LEDLPLFKGIPIHVFIAGRSIR 193 (213)
T ss_dssp HH-----TTCEEEEESSCC-GGGGGGGTTSCCSEEEESHHHH
T ss_pred HC-----CCCEEECCCCCC-CCCHHHHHHCCCCEEEECHHHC
T ss_conf 25-----586183388868-5899999986999999882426
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=82.84 E-value=0.83 Score=18.83 Aligned_cols=100 Identities=11% Similarity=-0.001 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 99999999973999926899811368899999999849979999239999899852221246888899999999998847
Q 000266 1140 LAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVAN 1219 (1760)
Q Consensus 1140 L~qlI~~Lr~~~p~~pI~VKlv~~~Gig~vA~~aakaGAD~IvIsG~~GGTGaa~~~si~~~GlP~~~~L~ev~q~L~~~ 1219 (1760)
+..++...+.. +.-+.|..- -..-...+.++|++.|-|.+.+=.| ....+.+..-|.+. +...
T Consensus 143 l~~l~~~A~~l--gl~~LVEvh----~~~El~~a~~~~a~iIGINnRdL~t--------~~vd~~~~~~l~~~---i~~~ 205 (254)
T d1vc4a_ 143 TGAYLEEARRL--GLEALVEVH----TERELEIALEAGAEVLGINNRDLAT--------LHINLETAPRLGRL---ARKR 205 (254)
T ss_dssp HHHHHHHHHHH--TCEEEEEEC----SHHHHHHHHHHTCSEEEEESBCTTT--------CCBCTTHHHHHHHH---HHHT
T ss_pred HHHHHHHHHHH--CCCEEEEEC----CHHHHHHHHCCCCCEEEEECCCHHH--------HHCCHHHHHHHHHC---CCCC
T ss_conf 89999999983--983588760----4988746534898789995255466--------30246879886320---1126
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 9998409998698679999999999199811235167998
Q 000266 1220 DLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLIT 1259 (1760)
Q Consensus 1220 glr~rV~IiadGGIrtG~DV~KALaLGAdaVgiGta~L~a 1259 (1760)
-..+.+++.+||.+..|+. .+..|+|+|.+|+++|-+
T Consensus 206 --~~~~i~IsESGI~~~~dv~-~l~~g~davLIGesLm~~ 242 (254)
T d1vc4a_ 206 --GFGGVLVAESGYSRKEELK-ALEGLFDAVLIGTSLMRA 242 (254)
T ss_dssp --TCCSEEEEESCCCSHHHHH-TTTTTCSEEEECHHHHTS
T ss_pred --CCCCEEEECCCCCCHHHHH-HHHCCCCEEEECHHHCCC
T ss_conf --7898899846999999999-998699999988364079
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=82.49 E-value=0.86 Score=18.74 Aligned_cols=74 Identities=20% Similarity=0.121 Sum_probs=44.8
Q ss_pred HHHHHHHHCCCCEEEEECCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 99999998499799992399-99899852221246888899999999998847999840999869867999999999919
Q 000266 1168 VIASGVVKGHADHVLISGHD-GGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG 1246 (1760)
Q Consensus 1168 ~vA~~aakaGAD~IvIsG~~-GGTGaa~~~si~~~GlP~~~~L~ev~q~L~~~glr~rV~IiadGGIrtG~DV~KALaLG 1246 (1760)
.....+.+.|+..|.+..-+ -||. -|+-. ..+.++.+. ..+|++++||+++-.|+.++..+|
T Consensus 157 ~~~~~~~~~g~~eii~tdI~~dG~~---------~G~d~-~~~~~i~~~-------~~~pii~~GGv~~~~di~~l~~~g 219 (252)
T d1h5ya_ 157 KWAKEVEELGAGEILLTSIDRDGTG---------LGYDV-ELIRRVADS-------VRIPVIASGGAGRVEHFYEAAAAG 219 (252)
T ss_dssp HHHHHHHHHTCSEEEEEETTTTTTC---------SCCCH-HHHHHHHHH-------CSSCEEEESCCCSHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCEEEEEEECCCCCC---------CCCCH-HHHHHHHHH-------CCCCEEEECCCCCHHHHHHHHHCC
T ss_conf 9999998569998999725456766---------87699-999999986-------398779743889999999998789
Q ss_pred CCCCCCCHHHHH
Q ss_conf 981123516799
Q 000266 1247 AEEFGFSTAPLI 1258 (1760)
Q Consensus 1247 AdaVgiGta~L~ 1258 (1760)
+++|.+|+++..
T Consensus 220 ~~gv~~gs~l~~ 231 (252)
T d1h5ya_ 220 ADAVLAASLFHF 231 (252)
T ss_dssp CSEEEESHHHHT
T ss_pred CCEEEEHHHHHC
T ss_conf 989998058785
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=82.13 E-value=0.88 Score=18.65 Aligned_cols=74 Identities=18% Similarity=0.012 Sum_probs=48.5
Q ss_pred HHHHHHHHCCCCEEEEECCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 99999998499799992399-99899852221246888899999999998847999840999869867999999999919
Q 000266 1168 VIASGVVKGHADHVLISGHD-GGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG 1246 (1760)
Q Consensus 1168 ~vA~~aakaGAD~IvIsG~~-GGTGaa~~~si~~~GlP~~~~L~ev~q~L~~~glr~rV~IiadGGIrtG~DV~KALaLG 1246 (1760)
.......+.|+.-|++..-+ -||. .|+. ...+.++.+. ..+|++++||+++-.|+.++.-.|
T Consensus 155 ~~~~~~~~~g~~eii~tdi~~dG~~---------~G~d-~~l~~~i~~~-------~~~pii~~GGv~~~~dl~~l~~~g 217 (251)
T d1ka9f_ 155 EWAVKGVELGAGEILLTSMDRDGTK---------EGYD-LRLTRMVAEA-------VGVPVIASGGAGRMEHFLEAFQAG 217 (251)
T ss_dssp HHHHHHHHHTCCEEEEEETTTTTTC---------SCCC-HHHHHHHHHH-------CSSCEEEESCCCSHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCEEEEEEECCCCCC---------CCCC-HHHHHHHHHH-------CCEEEEEECCCCCHHHHHHHHHCC
T ss_conf 9998777559988999854345766---------7852-5677789863-------140299965889999999999789
Q ss_pred CCCCCCCHHHHH
Q ss_conf 981123516799
Q 000266 1247 AEEFGFSTAPLI 1258 (1760)
Q Consensus 1247 AdaVgiGta~L~ 1258 (1760)
+++|.+|+++..
T Consensus 218 ~~gviig~al~~ 229 (251)
T d1ka9f_ 218 AEAALAASVFHF 229 (251)
T ss_dssp CSEEEESHHHHT
T ss_pred CCEEEEHHHHHC
T ss_conf 979998479786
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=81.71 E-value=0.91 Score=18.55 Aligned_cols=75 Identities=9% Similarity=0.009 Sum_probs=51.5
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999998499799992399998998522212468888999999999988479998409998698679999999999199
Q 000266 1168 VIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGA 1247 (1760)
Q Consensus 1168 ~vA~~aakaGAD~IvIsG~~GGTGaa~~~si~~~GlP~~~~L~ev~q~L~~~glr~rV~IiadGGIrtG~DV~KALaLGA 1247 (1760)
..|....+.|+|.|.|-.-++.... ..+....+.++.. .-.+|++..||||+-.|+-+.+-+||
T Consensus 34 ~~a~~~~~~g~dei~ivDld~~~~~---------~~~~~~~i~~i~~-------~~~~pi~vgGGIr~~e~i~~~l~~Ga 97 (253)
T d1thfd_ 34 ELGKFYSEIGIDELVFLDITASVEK---------RKTMLELVEKVAE-------QIDIPFTVGGGIHDFETASELILRGA 97 (253)
T ss_dssp HHHHHHHHTTCCEEEEEESSCSSSH---------HHHHHHHHHHHHT-------TCCSCEEEESSCCSHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCCEEEEEEECCCCCC---------CCCHHHHHHHHHH-------CCCCCCEEECCCCCCHHHHHHHHCCC
T ss_conf 9999999869998999752132247---------6347999999984-------15730024303000124466786289
Q ss_pred CCCCCCHHHHH
Q ss_conf 81123516799
Q 000266 1248 EEFGFSTAPLI 1258 (1760)
Q Consensus 1248 daVgiGta~L~ 1258 (1760)
+-|-+||.++-
T Consensus 98 ~kviigs~~~~ 108 (253)
T d1thfd_ 98 DKVSINTAAVE 108 (253)
T ss_dssp SEEEESHHHHH
T ss_pred CEEEECHHHHH
T ss_conf 89998748850
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=81.20 E-value=0.95 Score=18.43 Aligned_cols=75 Identities=13% Similarity=0.107 Sum_probs=51.5
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999998499799992399998998522212468888999999999988479998409998698679999999999199
Q 000266 1168 VIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGA 1247 (1760)
Q Consensus 1168 ~vA~~aakaGAD~IvIsG~~GGTGaa~~~si~~~GlP~~~~L~ev~q~L~~~glr~rV~IiadGGIrtG~DV~KALaLGA 1247 (1760)
..|....+.|||.|.|---++.-. -..+-...+.++... -.+|++++||||+-.|+-+.+.+||
T Consensus 36 ~~a~~~~~~gadei~ivDl~~~~~---------~~~~~~~~i~~i~~~-------~~~pi~~gGGIr~~e~~~~ll~~G~ 99 (252)
T d1h5ya_ 36 EMAVRYEEEGADEIAILDITAAPE---------GRATFIDSVKRVAEA-------VSIPVLVGGGVRSLEDATTLFRAGA 99 (252)
T ss_dssp HHHHHHHHTTCSCEEEEECCCCTT---------THHHHHHHHHHHHHH-------CSSCEEEESSCCSHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCCEEEEEECCCCCC---------CCCCHHHHHHHHHHH-------CCCCCEEECCCCHHHHHHHHHHCCC
T ss_conf 999999987999899971334322---------454089999988750-------4886313045211455566752488
Q ss_pred CCCCCCHHHHH
Q ss_conf 81123516799
Q 000266 1248 EEFGFSTAPLI 1258 (1760)
Q Consensus 1248 daVgiGta~L~ 1258 (1760)
+-|-++|..+.
T Consensus 100 ~kVii~s~~~~ 110 (252)
T d1h5ya_ 100 DKVSVNTAAVR 110 (252)
T ss_dssp SEEEESHHHHH
T ss_pred CEEEECCCCCC
T ss_conf 07983454457
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=80.70 E-value=0.99 Score=18.31 Aligned_cols=74 Identities=19% Similarity=0.177 Sum_probs=46.1
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999998499799992399998998522212468888999999999988479998409998698679999999999199
Q 000266 1168 VIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGA 1247 (1760)
Q Consensus 1168 ~vA~~aakaGAD~IvIsG~~GGTGaa~~~si~~~GlP~~~~L~ev~q~L~~~glr~rV~IiadGGIrtG~DV~KALaLGA 1247 (1760)
..|....+.|||.|.|---++-. ..+ +-...+..+... -.+|++++|||++-.|+.+.+.+||
T Consensus 35 ~~a~~~~~~ga~~l~i~DLd~~~---------~~~-~~~~~i~~i~~~-------~~~pi~vGGGIrs~~~~~~ll~~Ga 97 (239)
T d1vzwa1 35 EAALAWQRSGAEWLHLVDLDAAF---------GTG-DNRALIAEVAQA-------MDIKVELSGGIRDDDTLAAALATGC 97 (239)
T ss_dssp HHHHHHHHTTCSEEEEEEHHHHH---------TSC-CCHHHHHHHHHH-------CSSEEEEESSCCSHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCCEEEEEEECCCC---------CCC-CHHHHHHHHHHH-------CCCCEEEECCCCCCHHHHHHHCCCC
T ss_conf 99999998699889997300222---------344-008999988764-------0860676300134301210001266
Q ss_pred CCCCCCHHHHH
Q ss_conf 81123516799
Q 000266 1248 EEFGFSTAPLI 1258 (1760)
Q Consensus 1248 daVgiGta~L~ 1258 (1760)
+.|-+++.+.-
T Consensus 98 ~kVvi~s~~~~ 108 (239)
T d1vzwa1 98 TRVNLGTAALE 108 (239)
T ss_dssp SEEEECHHHHH
T ss_pred CCCHHHHHHHH
T ss_conf 41135677633
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=80.67 E-value=0.99 Score=18.31 Aligned_cols=75 Identities=16% Similarity=0.092 Sum_probs=49.7
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999998499799992399998998522212468888999999999988479998409998698679999999999199
Q 000266 1168 VIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGA 1247 (1760)
Q Consensus 1168 ~vA~~aakaGAD~IvIsG~~GGTGaa~~~si~~~GlP~~~~L~ev~q~L~~~glr~rV~IiadGGIrtG~DV~KALaLGA 1247 (1760)
..|....+.|+|.|.|---++.-.. ..+-...+.+ +.+ .-.+|++++||||+-.|+-+.+.+||
T Consensus 34 ~~a~~~~~~g~dei~iiDl~~~~~~---------~~~~~~~i~~----i~~---~~~~pi~vgGGIrs~e~~~~ll~~Ga 97 (251)
T d1ka9f_ 34 EAARAYDEAGADELVFLDISATHEE---------RAILLDVVAR----VAE---RVFIPLTVGGGVRSLEDARKLLLSGA 97 (251)
T ss_dssp HHHHHHHHHTCSCEEEEECCSSTTC---------HHHHHHHHHH----HHT---TCCSCEEEESSCCSHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCCEEEEEECCCCCCC---------CHHHHHHHHH----HHH---CCCCCHHEECCCCCHHHHHHHHHCCC
T ss_conf 9999999869998999844452123---------3167899998----886---04851210115347888889997489
Q ss_pred CCCCCCHHHHH
Q ss_conf 81123516799
Q 000266 1248 EEFGFSTAPLI 1258 (1760)
Q Consensus 1248 daVgiGta~L~ 1258 (1760)
+-|-+||.++-
T Consensus 98 ~kVii~s~~~~ 108 (251)
T d1ka9f_ 98 DKVSVNSAAVR 108 (251)
T ss_dssp SEEEECHHHHH
T ss_pred CEEEECCHHHH
T ss_conf 77998944543
|
| >d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermotoga maritima [TaxId: 2336]
Probab=80.23 E-value=1 Score=18.21 Aligned_cols=102 Identities=12% Similarity=0.041 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHH-HCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 9999899999999973999926899811368899999999-849979999239999899852221246888899999999
Q 000266 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVV-KGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETH 1213 (1760)
Q Consensus 1135 ySiEdL~qlI~~Lr~~~p~~pI~VKlv~~~Gig~vA~~aa-kaGAD~IvIsG~~GGTGaa~~~si~~~GlP~~~~L~ev~ 1213 (1760)
-+.++|..++...+.. +.-+.|-. ..-... ..+. ..+++.|-|.+.+-.| ....+... .
T Consensus 134 L~~~~l~~l~~~a~~l--gle~LvEv---h~~~El-~~al~~~~a~iiGINnRdL~t--------~~vd~~~~------~ 193 (251)
T d1i4na_ 134 LTAEQIKEIYEAAEEL--GMDSLVEV---HSREDL-EKVFSVIRPKIIGINTRDLDT--------FEIKKNVL------W 193 (251)
T ss_dssp SCHHHHHHHHHHHHTT--TCEEEEEE---CSHHHH-HHHHTTCCCSEEEEECBCTTT--------CCBCTTHH------H
T ss_pred CCHHHHHHHHHHHHHH--CCEEECCC---CCHHHH-HHHHCCCCCCEEEEEECCHHC--------CCHHHHHH------H
T ss_conf 6499999999999982--97400246---989999-988613555133454022210--------20145689------9
Q ss_pred HHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 9988479998409998698679999999999199811235167998
Q 000266 1214 QTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLIT 1259 (1760)
Q Consensus 1214 q~L~~~glr~rV~IiadGGIrtG~DV~KALaLGAdaVgiGta~L~a 1259 (1760)
+.+.. +...+.+++.+||++..|+.. +..|+|+|.+|+++|.+
T Consensus 194 ~L~~~--ip~~~~~IaESGI~~~~d~~~-l~~G~davLIG~sLm~~ 236 (251)
T d1i4na_ 194 ELLPL--VPDDTVVVAESGIKDPRELKD-LRGKVNAVLVGTSIMKA 236 (251)
T ss_dssp HHGGG--SCTTSEEEEESCCCCGGGHHH-HTTTCSEEEECHHHHHC
T ss_pred HHHHH--CCCCCEEEECCCCCCHHHHHH-HHHCCCEEEECHHHHCC
T ss_conf 98840--789997998279999999999-98289999988687489
|