Citrus Sinensis ID: 000268
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1757 | 2.2.26 [Sep-21-2011] | |||||||
| Q8WWQ0 | 1821 | PH-interacting protein OS | yes | no | 0.320 | 0.309 | 0.323 | 8e-81 | |
| Q8VDD9 | 1821 | PH-interacting protein OS | yes | no | 0.320 | 0.309 | 0.322 | 1e-80 | |
| Q9NSI6 | 2320 | Bromodomain and WD repeat | no | no | 0.323 | 0.245 | 0.314 | 5e-80 | |
| Q921C3 | 2304 | Bromodomain and WD repeat | no | no | 0.330 | 0.251 | 0.314 | 3e-79 | |
| Q6RI45 | 1802 | Bromodomain and WD repeat | no | no | 0.330 | 0.322 | 0.309 | 8e-74 | |
| A2AHJ4 | 1799 | Bromodomain and WD repeat | no | no | 0.330 | 0.322 | 0.306 | 1e-72 | |
| Q54MP8 | 2200 | Bromodomain and WD repeat | yes | no | 0.158 | 0.126 | 0.276 | 3e-30 | |
| P25382 | 515 | Ribosome assembly protein | yes | no | 0.178 | 0.609 | 0.235 | 3e-20 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | no | no | 0.203 | 0.234 | 0.255 | 6e-20 | |
| Q00808 | 1356 | Vegetative incompatibilit | no | no | 0.209 | 0.271 | 0.247 | 2e-19 |
| >sp|Q8WWQ0|PHIP_HUMAN PH-interacting protein OS=Homo sapiens GN=PHIP PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 303 bits (776), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 228/704 (32%), Positives = 328/704 (46%), Gaps = 141/704 (20%)
Query: 51 EVYFLIMHFLSTGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLS 110
E+YFLI FL GPC + E+ E +LLPRR W G P +
Sbjct: 14 ELYFLIARFLEDGPCQQAAQVLIREVAEKELLPRRTD-W-------------TGKEHPRT 59
Query: 111 YNKLVERYPHIEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAA-DVPTLLGRGSFSLLSY 169
Y LV+ Y H+ DHL+++ +L ++ + P + V TLLG G SLL
Sbjct: 60 YQNLVKYYRHLAPDHLLQICHRL--------GPLLEQEIPQSVPGVQTLLGAGRQSLLRT 111
Query: 170 DRDKGQNEIDHPPAHMRWPHMYADQVRGLGLREIGGGF-----TRHHRAPSIRAACYAIA 224
++ H+ W +G L + G + PSI ++
Sbjct: 112 NKS---------CKHVVW--------KGSALAALHCGRPPESPVNYGSPPSIADTLFSRK 154
Query: 225 ----------KPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET 274
P+ + Q M+ KR+ GH ++VYC FDR+GR + TGSDD LVKIW+ +
Sbjct: 155 LNGKYRLERLVPTAVYQHMKMHKRILGHLSSVYCVTFDRTGRRIFTGSDDCLVKIWATDD 214
Query: 275 AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIA 334
LA+ RGH +I+D+AV+ N ++A+ S D +IRVW L P++VL+GH+A++T++
Sbjct: 215 GRLLATLRGHAAEISDMAVNYENTMIAAGSCDKMIRVWCLRTCAPLAVLQGHSASITSLQ 274
Query: 335 FSPR-PGSVYQLLSSSDDGTC--RIWDARYSQFSPR--IYIPRPSDAVAGRNMAPSSSAG 389
FSP GS L S+ DGT +WDA + +PR + RP V
Sbjct: 275 FSPLCSGSKRYLSSTGADGTICFWLWDAGTLKINPRPAKFTERPRPGV------------ 322
Query: 390 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYV 449
Q+ C +F+A G TGS+D + RV+ S QP +I L H + V+ +
Sbjct: 323 ----QMICSSFSAGGMFLATGSTDHIIRVYFF------GSGQP-EKISELEFHTDKVDSI 371
Query: 450 QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAAR 509
QFS ++RF V+ SRDG+A IW + +R K+
Sbjct: 372 QFSN--TSNRF------------------------VSGSRDGTARIW--QFKRREWKSIL 403
Query: 510 WTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 569
A P G +I T V M+ W + V+ A+ + + VWN+
Sbjct: 404 LDMATR--------PAGQNLQGIEDKI--TKMKVTMVAWDRHDNTVITAVNNMTLKVWNS 453
Query: 570 ADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLV 629
G L+H L GH + +VL+ HPF+PR+ SAG+DG IVWD+ G+ IR Y F ++
Sbjct: 454 YTGQLIHVLMGHEDEVFVLEPHPFDPRVLFSAGHDGNVIVWDLARGVKIRSY----FNMI 509
Query: 630 DG---------KFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQ-FFLGDYRPLVQD 679
+G K SPDG +D G L I G S+ D DQ FF DYRPL++D
Sbjct: 510 EGQGHGAVFDCKCSPDGQHFACTDSHGHLLIFGFGSS-SKYDKIADQMFFHSDYRPLIRD 568
Query: 680 TYGNVLDQETQLAPHRRNLQDP--LCDSAMIPYPEPYQTMYQQR 721
VLD++TQ APH L P L D P+P YQ + R
Sbjct: 569 ANNFVLDEQTQQAPH---LMPPPFLVDVDGNPHPSRYQRLVPGR 609
|
Probable regulator of the insulin and insulin-like growth factor signaling pathways. Stimulates cell proliferation through regulation of cyclin transcription and has an anti-apoptotic activity through AKT1 phosphorylation and activation. Plays a role in the regulation of cell morphology and cytoskeletal organization. Homo sapiens (taxid: 9606) |
| >sp|Q8VDD9|PHIP_MOUSE PH-interacting protein OS=Mus musculus GN=Phip PE=1 SV=2 | Back alignment and function description |
|---|
Score = 303 bits (775), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 227/704 (32%), Positives = 328/704 (46%), Gaps = 141/704 (20%)
Query: 51 EVYFLIMHFLSTGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLS 110
E+YFLI FL GPC + E+ E +LLPRR W G P +
Sbjct: 14 ELYFLIARFLEDGPCQQAAQVLIREVAEKELLPRRTD-W-------------TGKEHPRT 59
Query: 111 YNKLVERYPHIEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAA-DVPTLLGRGSFSLLSY 169
Y LV+ Y H+ DHL+++ +L ++ + P + V TLLG G SLL
Sbjct: 60 YQNLVKYYRHLAPDHLLQICHRL--------GPLLEQEIPQSVPGVQTLLGAGRQSLLRT 111
Query: 170 DRDKGQNEIDHPPAHMRWPHMYADQVRGLGLREIGGGF-----TRHHRAPSIRAACYAIA 224
++ H+ W +G L + G + PSI ++
Sbjct: 112 NKS---------CKHVVW--------KGSALAALHCGRPPESPVNYGSPPSIADTLFSRK 154
Query: 225 ----------KPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET 274
P+ + Q M+ KR+ GH ++VYC FDR+GR + TGSDD LVKIW+ +
Sbjct: 155 LNGKYRLERLVPTAVYQHMKMHKRILGHLSSVYCVTFDRTGRRIFTGSDDCLVKIWATDD 214
Query: 275 AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIA 334
LA+ RGH +I+D+AV+ N ++A+ S D +IRVW L P++VL+GH+A++T++
Sbjct: 215 GRLLATLRGHAAEISDMAVNYENTMIAAGSCDKMIRVWCLRTCAPLAVLQGHSASITSLQ 274
Query: 335 FSPR-PGSVYQLLSSSDDGTC--RIWDARYSQFSPR--IYIPRPSDAVAGRNMAPSSSAG 389
FSP GS L S+ DGT +WDA + +PR + RP V
Sbjct: 275 FSPLCSGSKRYLSSTGADGTICFWLWDAGTLKINPRPTKFTERPRPGV------------ 322
Query: 390 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYV 449
Q+ C +F+A G TGS+D + RV+ S QP +I L H + V+ +
Sbjct: 323 ----QMICSSFSAGGMFLATGSTDHIIRVYFF------GSGQP-EKISELEFHTDKVDSI 371
Query: 450 QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAAR 509
QFS ++RF V+ SRDG+A IW + +R K+
Sbjct: 372 QFSN--TSNRF------------------------VSGSRDGTARIW--QFKRREWKSIL 403
Query: 510 WTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 569
A P G +I T V M+ W + V+ A+ + + VWN+
Sbjct: 404 LDMATR--------PAGQNLQGIEDKI--TKMKVTMVAWDRHDNTVITAVNNMTLKVWNS 453
Query: 570 ADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLV 629
G L+H L GH + +VL+ HPF+PR+ SAG+DG IVWD+ G+ +R Y F ++
Sbjct: 454 YTGQLIHVLMGHEDEVFVLEPHPFDPRVLFSAGHDGNVIVWDLARGVKVRSY----FNMI 509
Query: 630 DG---------KFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQ-FFLGDYRPLVQD 679
+G K SPDG +D G L I G S+ D DQ FF DYRPL++D
Sbjct: 510 EGQGHGAVFDCKCSPDGQHFACTDSHGHLLIFGFGSS-SKYDKIADQMFFHSDYRPLIRD 568
Query: 680 TYGNVLDQETQLAPHRRNLQDP--LCDSAMIPYPEPYQTMYQQR 721
VLD++TQ APH L P L D P+P YQ + R
Sbjct: 569 ANNFVLDEQTQQAPH---LMPPPFLVDVDGNPHPSRYQRLVPGR 609
|
Probable regulator of the insulin and insulin-like growth factor signaling pathways. Stimulates cell proliferation through regulation of cyclin transcription and has an anti-apoptotic activity through AKT1 phosphorylation and activation. Plays a role in the regulation of cell morphology and cytoskeletal organization. Mus musculus (taxid: 10090) |
| >sp|Q9NSI6|BRWD1_HUMAN Bromodomain and WD repeat-containing protein 1 OS=Homo sapiens GN=BRWD1 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 300 bits (769), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 219/697 (31%), Positives = 330/697 (47%), Gaps = 128/697 (18%)
Query: 51 EVYFLIMHFLSTGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLS 110
E+YFLI +LS GPC R EL ++QLLP+R W G+E++ S
Sbjct: 17 ELYFLIARYLSAGPCRRAAQVLVQELEQYQLLPKRLD-W-------EGNEHNR------S 62
Query: 111 YNKLVERYPHIEKDHLVKLLKQL--IINTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLS 168
Y +LV H+ DHL+++ +++ +++ P P+ + V +LLG G SLL
Sbjct: 63 YEELVLSNKHVAPDHLLQICQRIGPMLDKEIP---------PSISRVTSLLGAGRQSLLR 113
Query: 169 YDRD------KGQNEIDHPPAHM-RWPHMYADQVRGLGLREIGGGFTRHHRAPSIR-AAC 220
+D KG H R P M + L EI HR + +
Sbjct: 114 TAKDCRHTVWKGSA---FAALHRGRPPEMPVNYGSPPNLVEI-------HRGKQLTGCST 163
Query: 221 YAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLAS 280
++ A P TM Q ++ +R+ GH +AVYC FDR+G + TGSDD LVKIWS L++
Sbjct: 164 FSTAFPGTMYQHIKMHRRILGHLSAVYCVAFDRTGHRIFTGSDDCLVKIWSTHNGRLLST 223
Query: 281 CRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRP- 339
RGH +I+D+AV+ N ++A+ S D IIRVW L P++VL+GHT ++T++ FSP
Sbjct: 224 LRGHSAEISDMAVNYENTMIAAGSCDKIIRVWCLRTCAPVAVLQGHTGSITSLQFSPMAK 283
Query: 340 GSVYQLLSSSDDGTCRI--WDARYSQFSPR--IYIPRPSDAVAGRNMAPSSSAGPQSHQI 395
GS ++S+ DGT WD +FSPR + +P V Q+
Sbjct: 284 GSQRYMVSTGADGTVCFWQWDLESLKFSPRPLKFTEKPRPGV----------------QM 327
Query: 396 FCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCA 455
C +F+ G TGS+D + R++ + +I L H + V+ +QF C
Sbjct: 328 LCSSFSVGGMFLATGSTDHVIRMYFL-------GFEAPEKIAELESHTDKVDSIQF--CN 378
Query: 456 VASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYH 515
RF ++ SRDG+A IW R + ++ A
Sbjct: 379 NGDRF------------------------LSGSRDGTARIW--RFEQLEWRSILLDMATR 412
Query: 516 LKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLV 575
+ +R + P+ V MI W+ ++ V+ A+ D + VWN+ G L+
Sbjct: 413 I---------SGDLSSEEERFM-KPK-VTMIAWNQNDSIVVTAVNDHVLKVWNSYTGQLL 461
Query: 576 HSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDG---- 631
H+L GH + +VL+ HPF+ RI +SAG+DG +WDI +G ++ Y F +++G
Sbjct: 462 HNLMGHADEVFVLETHPFDSRIMLSAGHDGSIFIWDITKGTKMKHY----FNMIEGQGHG 517
Query: 632 -----KFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLD 686
KFS DG +D G L I G + + FF DYRPL++D+ VLD
Sbjct: 518 AVFDCKFSQDGQHFACTDSHGHLLIFGFGCSKPYEKIPDQMFFHTDYRPLIRDSNNYVLD 577
Query: 687 QETQLAPHRRNLQDP--LCDSAMIPYPEPYQTMYQQR 721
++TQ APH L P L D P+P YQ + R
Sbjct: 578 EQTQQAPH---LMPPPFLVDVDGNPHPTKYQRLVPGR 611
|
May be a transcriptional activator. May be involved in chromatin remodeling (By similarity). Plays a role in the regulation of cell morphology and cytoskeletal organization. Required in the control of cell shape. Homo sapiens (taxid: 9606) |
| >sp|Q921C3|BRWD1_MOUSE Bromodomain and WD repeat-containing protein 1 OS=Mus musculus GN=Brwd1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 298 bits (763), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 223/708 (31%), Positives = 331/708 (46%), Gaps = 128/708 (18%)
Query: 40 PAELDVDVDLREVYFLIMHFLSTGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGD 99
PA V + E+YFLI +LS GPC R EL ++QLLP+R W G+
Sbjct: 6 PARRPVPLIESELYFLIARYLSAGPCRRAAQVLVQELEQYQLLPKRLD-W-------EGN 57
Query: 100 ENDDGMSFPLSYNKLVERYPHIEKDHLVKLLKQL--IINTSSPSRAMIGGDAPNAADVPT 157
E++ SY +LV H+ DHL+++ +++ +++ P P+ + V +
Sbjct: 58 EHNR------SYEELVLSNKHVAPDHLLQICQRIGPMLDKEVP---------PSISRVTS 102
Query: 158 LLGRGSFSLLSYDRD------KGQNEIDHPPAHM-RWPHMYADQVRGLGLREIGGGFTRH 210
LLG G SLL +D KG H R P M + L EI
Sbjct: 103 LLGAGRQSLLRTAKDCRHTVWKGSA---FAALHRGRPPEMPVNYGPPPSLVEI------- 152
Query: 211 HRAPSIR-AACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKI 269
HR + + ++ A P TM Q ++ +R+ GH +AVYC FDR+G + TGSDD LVKI
Sbjct: 153 HRGRQLTGCSTFSTAFPGTMYQHIKMHRRILGHLSAVYCVAFDRTGHRIFTGSDDCLVKI 212
Query: 270 WSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAA 329
WS L++ RGH +I+D+AV+ N L+A+ S D IIRVW L P++VL+GHT +
Sbjct: 213 WSTHNGRLLSTLRGHSAEISDMAVNYENTLIAAGSCDKIIRVWCLRTCAPVAVLQGHTGS 272
Query: 330 VTAIAFSPRP-GSVYQLLSSSDDGTCRI--WDARYSQFSPR--IYIPRPSDAVAGRNMAP 384
+T++ FSP G ++S+ DGT WD +FSPR + +P V
Sbjct: 273 ITSLQFSPMAKGPQRYMVSTGADGTVCFWQWDLESLKFSPRPLKFTEKPRPGV------- 325
Query: 385 SSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEN 444
Q+ C +F+ G TGS+D + R++ D P +I L H +
Sbjct: 326 ---------QMLCSSFSVGGMFLATGSTDHVIRMYFL------GFDAP-EKIAELESHTD 369
Query: 445 DVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSH 504
V+ +QF C RF ++ SRDG+A IW
Sbjct: 370 KVDSIQF--CNNGDRF------------------------LSGSRDGTARIW-------- 395
Query: 505 PKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRI 564
R+ Q + + P+ V MI W+ D+ V+ A+ D +
Sbjct: 396 ----RFEQLEWRSILLDMSARISGDTSSEEERFMKPK-VTMIAWNQDDSTVVTAVNDHVL 450
Query: 565 CVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS 624
VW++ G L+H+L GH + +VL+ HPF+ RI +SAG+DG +WDI +GI ++ Y
Sbjct: 451 KVWSSYTGQLLHNLLGHADEVFVLETHPFDSRIMLSAGHDGSIFIWDITKGIKMKHY--- 507
Query: 625 RFRLVDG---------KFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRP 675
F +++G KFS DG +D G L I G + + FF DYRP
Sbjct: 508 -FNMIEGQGHGAVFDCKFSQDGQHFACTDSHGHLLIFGFGCSKPYEKIPDQMFFHTDYRP 566
Query: 676 LVQDTYGNVLDQETQLAPHRRNLQDP--LCDSAMIPYPEPYQTMYQQR 721
L++D+ VLD++TQ APH L P L D P+P +Q + R
Sbjct: 567 LIRDSNNYVLDEQTQQAPH---LMPPPFLVDVDGNPHPTKFQRLVPGR 611
|
May be a transcriptional activator. May be involved in chromatin remodeling. Plays a role in the regulation of cell morphology and cytoskeletal organization. Required in the control of cell shape. Mus musculus (taxid: 10090) |
| >sp|Q6RI45|BRWD3_HUMAN Bromodomain and WD repeat-containing protein 3 OS=Homo sapiens GN=BRWD3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 280 bits (716), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 213/688 (30%), Positives = 318/688 (46%), Gaps = 107/688 (15%)
Query: 51 EVYFLIMHFLSTGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLS 110
E+Y+LI FL +GPC+++ EL EHQL+PRR W +G S
Sbjct: 11 ELYYLIARFLQSGPCNKSAQVLVQELEEHQLIPRRLD-W-------------EGKEHRRS 56
Query: 111 YNKLVERYPHIEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAA-DVPTLLGRGSFSLLSY 169
+ LV HI D+L+K+ +++ ++ + P + V TLLG G SLL
Sbjct: 57 FEDLVAANAHIPPDYLLKICERI--------GPLLDKEIPQSVPGVQTLLGVGRQSLLRD 108
Query: 170 DRDKGQ---NEIDHPPAHM-RWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAK 225
+D N H R P + + V+ + I R S +
Sbjct: 109 AKDCKSTLWNGSAFAALHRGRPPELPVNYVKPPNVVNITSA--RQLTGCSRFGHIF---- 162
Query: 226 PSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHE 285
PS+ Q ++ KR+ GH ++VYC FDRSGR + TGSDD LVKIW+ + LA+ RGH
Sbjct: 163 PSSAYQHIKMHKRILGHLSSVYCVAFDRSGRRIFTGSDDCLVKIWATDDGRLLATLRGHS 222
Query: 286 GDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSP-RPGSVYQ 344
+I+D+AV+ N L+A+ S D ++RVW L P++VL+GH+A++T+I F P G+
Sbjct: 223 AEISDMAVNYENTLIAAGSCDKVVRVWCLRTCAPVAVLQGHSASITSIQFCPSTKGTNRY 282
Query: 345 LLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG 404
L S+ DGT W R R + + + P QI C +F++ G
Sbjct: 283 LTSTGADGTICFWQWHVKTMKFR-----------DRPVKFTERSRP-GVQISCSSFSSGG 330
Query: 405 TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLAD 464
TGS+D + R++ S+ P +I L H + V VQF + RF
Sbjct: 331 MFITTGSTDHVIRIYYL------GSEVP-EKIAELESHTDKVVAVQFCNNGDSLRF---- 379
Query: 465 SSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMP 524
V+ SRDG+A IW + W ++ L +
Sbjct: 380 --------------------VSGSRDGTARIW-------QYQQQEW-KSIVLDMATKMTG 411
Query: 525 PQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTES 584
P G + T V M+ W + V+ A+ + + VWN+ G L+H+L+GH +
Sbjct: 412 NNLPSGEDK----ITKLKVTMVAWDRYDTTVITAVNNFLLKVWNSITGQLLHTLSGHDDE 467
Query: 585 TYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDG---------KFSP 635
+VL+ HPF+ RI +SAG+DG +WD+ G IR Y F +++G KFSP
Sbjct: 468 VFVLEAHPFDQRIILSAGHDGNIFIWDLDRGTKIRNY----FNMIEGQGHGAVFDCKFSP 523
Query: 636 DGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHR 695
DG +D G L + G + + FF DYRPL++D VLD++TQ APH
Sbjct: 524 DGNHFACTDSHGHLLLFGFGCSKYYEKIPDQMFFHTDYRPLIRDANNYVLDEQTQQAPH- 582
Query: 696 RNLQDP--LCDSAMIPYPEPYQTMYQQR 721
L P L D P+P +Q + R
Sbjct: 583 --LMPPPFLVDVDGNPHPTKFQRLVPGR 608
|
Plays a role in the regulation of cell morphology and cytoskeletal organization. Required in the control of cell shape. Homo sapiens (taxid: 9606) |
| >sp|A2AHJ4|BRWD3_MOUSE Bromodomain and WD repeat-containing protein 3 OS=Mus musculus GN=Brwd3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 276 bits (706), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 211/688 (30%), Positives = 317/688 (46%), Gaps = 107/688 (15%)
Query: 51 EVYFLIMHFLSTGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLS 110
E+Y+LI FL +GPC+++ EL EHQL+PRR W +G S
Sbjct: 11 ELYYLIARFLQSGPCNKSAQVLVQELEEHQLIPRRLD-W-------------EGKEHRRS 56
Query: 111 YNKLVERYPHIEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAA-DVPTLLGRGSFSLLSY 169
+ LV HI D+L+K+ +++ ++ + P + V TLLG G SLL
Sbjct: 57 FEDLVAANAHIPPDYLLKICERI--------GPLLDKEIPQSVPGVQTLLGVGRQSLLRD 108
Query: 170 DRDKGQ---NEIDHPPAHM-RWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAK 225
+D N H R P + + V+ + I R S + +
Sbjct: 109 AKDCKSTLWNGSAFAALHRGRPPELPVNYVKPPNVVNITSA--RQLTGCSRFSHVF---- 162
Query: 226 PSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHE 285
PS+ Q ++ KR+ GH ++VYC FDRSGR + TGSDD LVKIW+ + LA+ RGH
Sbjct: 163 PSSAYQHIKMHKRILGHLSSVYCVAFDRSGRRIFTGSDDCLVKIWATDDGRLLATLRGHS 222
Query: 286 GDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSP-RPGSVYQ 344
+I+D+AV+ N L+A+ S D ++RVW L P++VL+GH+A++T+I F P G+
Sbjct: 223 AEISDMAVNYENTLIAAGSCDKVVRVWCLRTCAPVAVLQGHSASITSIQFCPSTKGTTRY 282
Query: 345 LLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG 404
L S+ DGT W R R + + + P QI C +F++ G
Sbjct: 283 LTSTGADGTICFWQWHVKTMKFR-----------DRPVKFTERSRP-GVQISCSSFSSGG 330
Query: 405 TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLAD 464
TGS+D + R++ S+ P +I L H + V VQF + RF
Sbjct: 331 MFITTGSTDHVIRIYYL------GSEIP-EKIAELESHTDKVVAVQFCNNGDSLRF---- 379
Query: 465 SSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMP 524
V+ SRDG+A IW + ++ K+ A +
Sbjct: 380 --------------------VSGSRDGTARIW--QYQQQEWKSIVLDMATKMS------- 410
Query: 525 PQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTES 584
T V M+ W + V+ A+ + + VWN+ G L+H+L+GH +
Sbjct: 411 ---GNNLTSAEDKVTKLKVTMVAWDRYDTTVITAVNNFLLKVWNSVTGQLLHTLSGHDDE 467
Query: 585 TYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDG---------KFSP 635
+VL+ HPF+ RI +SAG+DG +WD+ G IR Y F +++G KFSP
Sbjct: 468 VFVLEAHPFDQRIILSAGHDGNIFIWDLDRGTKIRNY----FNMIEGQGHGAVFDCKFSP 523
Query: 636 DGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHR 695
DG +D G L + G + + FF DYRPL++D VLD++TQ APH
Sbjct: 524 DGNHFACTDSHGHLLLFGFGCSKYYEKIPDQMFFHTDYRPLIRDANNYVLDEQTQQAPH- 582
Query: 696 RNLQDP--LCDSAMIPYPEPYQTMYQQR 721
L P L D P+P +Q + R
Sbjct: 583 --LMPPPFLVDVDGNPHPTKFQRLVPGR 608
|
Plays a role in the regulation of cell morphology and cytoskeletal organization. Required in the control of cell shape. Mus musculus (taxid: 10090) |
| >sp|Q54MP8|Y5837_DICDI Bromodomain and WD repeat-containing DDB_G0285837 OS=Dictyostelium discoideum GN=DDB_G0285837 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 153/333 (45%), Gaps = 55/333 (16%)
Query: 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQ 450
++++I N GT+ V S D+ ++W+ P ++ L GH + +Q
Sbjct: 549 KTNEITGTTMNKGGTLIV-ASVDSSLKIWSTLF-------NPPKLVNTLEGHPTTILALQ 600
Query: 451 FSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510
+S + D IV+ S DG+ IIW H +W
Sbjct: 601 YSHGS--------------------------DAIVSGSYDGTVIIW------RHSGGPKW 628
Query: 511 TQA-YHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 569
+++K P P+ ++ + ++WS D+RF++ + I VWN+
Sbjct: 629 DHVIFNIK---NTQRPNQANSHPK-KVARSKATFKNVIWSHDDRFIITTDYNM-IRVWNS 683
Query: 570 ADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS----R 625
DGS + HT YV HPF+ R+ MS+GYD + I+W I G I+ + + +
Sbjct: 684 LDGSFHLEMAEHTSEVYVTSCHPFDSRLIMSSGYDSQVILWSIETGEIIKKFVLQEPGFQ 743
Query: 626 FRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKY----DQFFLGDYRPLVQDTY 681
+++DG FSPDG I+++ G+ ++ G G + K +Q+FL DY PL++D
Sbjct: 744 CQILDGCFSPDGQKFIVTNSTGKWFMFELGLGSDINNLKKLVPNEQYFLTDYHPLIRDAN 803
Query: 682 GNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPY 714
GNVLD+ TQ PH + L + +PYP+ Y
Sbjct: 804 GNVLDELTQTPPHLM-PRAMLVNYQGLPYPDHY 835
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|P25382|NLE1_YEAST Ribosome assembly protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSA4 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 93/395 (23%), Positives = 167/395 (42%), Gaps = 81/395 (20%)
Query: 239 VRGHRNAVYCAIFD-RSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNN 297
+ GH + + C+ F + ++TG+ D +IW +T + + +GH + ++ S +
Sbjct: 139 IAGHGSTILCSAFAPHTSSRMVTGAGDNTARIWDCDTQTPMHTLKGHYNWVLCVSWSPDG 198
Query: 298 ALVASASNDCIIRVWRLPDGLPIS-VLRGHTAAVTAIAFSP----RPGSVYQLLSSSDDG 352
++A+ S D IR+W G + LRGH+ +T++++ P +PGS +L SSS DG
Sbjct: 199 EVIATGSMDNTIRLWDPKSGQCLGDALRGHSKWITSLSWEPIHLVKPGSKPRLASSSKDG 258
Query: 353 TCRIWD--ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG 410
T +IWD +R Q++ ++G ++ + C + G ++ +G
Sbjct: 259 TIKIWDTVSRVCQYT-----------MSG-----------HTNSVSCVKWGGQGLLY-SG 295
Query: 411 SSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDS 470
S D RVW D + I++L H + VN++ S + + K+ S
Sbjct: 296 SHDRTVRVW--------DINSQGRCINILKSHAHWVNHLSLSTDYALRIGAFDHTGKKPS 347
Query: 471 TPK------FKN-SWFCHDN------IVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLK 517
TP+ +N C N +VT S D + +W P
Sbjct: 348 TPEEAQKKALENYEKICKKNGNSEEMMVTASDDYTMFLWNPLKSTK-------------- 393
Query: 518 VPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHS 577
P R+ + VN + +S D R++++A D I +W+ DG + +
Sbjct: 394 --------------PIARMTGHQKLVNHVAFSPDGRYIVSASFDNSIKLWDGRDGKFIST 439
Query: 578 LTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612
GH S Y + + R+ +S D VWD+
Sbjct: 440 FRGHVASVYQV-AWSSDCRLLVSCSKDTTLKVWDV 473
|
Involved in processing and efficient intra-nuclear transport or pre-60S ribosomal subunits. Forms a complex with REA1 which is essential for ATP-dependent dissociation of a group of nonribosomal factors from the pre-60S particle. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 111/434 (25%), Positives = 172/434 (39%), Gaps = 76/434 (17%)
Query: 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAL 299
+GH VY F+ G + TGS D+ V++W + ++ C +GH + + SS+ A+
Sbjct: 987 QGHTGWVYSVAFNLDGSMLATGSGDQTVRLWDISSSQCFYIFQGHTSCVRSVVFSSDGAM 1046
Query: 300 VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
+AS S+D +R+W + G + L+GHT+ V ++ FSP L S DD R+WD
Sbjct: 1047 LASGSDDQTVRLWDISSGNCLYTLQGHTSCVRSVVFSPDGA---MLASGGDDQIVRLWD- 1102
Query: 360 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVW 419
++ N + G S F F+ NG GSSD + R+W
Sbjct: 1103 -----------------ISSGN-CLYTLQGYTSWVRF-LVFSPNGVTLANGSSDQIVRLW 1143
Query: 420 NACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS--GCAVAS-------RFSLADSSKEDS 470
+ + L GH N VN V FS G +AS R SSK
Sbjct: 1144 DISSKKC---------LYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLY 1194
Query: 471 TPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRG 530
+ SW N V + DGS + S S W
Sbjct: 1195 ILQGHTSWV---NSVVFNPDGSTL----ASGSSDQTVRLWEI------------------ 1229
Query: 531 GPRQRILPTPRG----VNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTY 586
+ L T +G VN +V++ D + + D + +W+ + +H+ GHT +
Sbjct: 1230 -NSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTN--W 1286
Query: 587 VLDVHPFNPRIAMSAGYDGKTIV--WDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSD 644
V V FNP +M A G V W+I + ++ + FSPDG +
Sbjct: 1287 VNSV-AFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGS 1345
Query: 645 DVGQLYILNTGQGE 658
D + + + GE
Sbjct: 1346 DDQTVRLWSISSGE 1359
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 106/428 (24%), Positives = 168/428 (39%), Gaps = 60/428 (14%)
Query: 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSN 296
+ + GH ++V F G+ V +GSDD+ +KIW + + GH G + +A S +
Sbjct: 835 QTLEGHGSSVLSVAFSADGQRVASGSDDKTIKIWDTASGTGTQTLEGHGGSVWSVAFSPD 894
Query: 297 NALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356
VAS S+D I++W G L GH V ++AFSP V S SDD T +I
Sbjct: 895 RERVASGSDDKTIKIWDAASGTCTQTLEGHGGRVQSVAFSPDGQRV---ASGSDDHTIKI 951
Query: 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLA 416
WDA + + + S+ + AF+ +G +GS D
Sbjct: 952 WDA--------------ASGTCTQTLEGHGSS------VLSVAFSPDGQRVASGSGDKTI 991
Query: 417 RVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS--GCAVASRFSLADSSKEDSTPKF 474
++W+ + L GH V V FS G VA S +D T K
Sbjct: 992 KIWDTASGTCTQT---------LEGHGGSVWSVAFSPDGQRVA-------SGSDDKTIKI 1035
Query: 475 KNSWFCHDNIVTCSRDG-----SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPR 529
W T + +G ++++ P +R A + + +K+
Sbjct: 1036 ---WDTASGTCTQTLEGHGGWVQSVVFSPDGQR----VASGSDDHTIKI------WDAVS 1082
Query: 530 GGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLD 589
G Q + V + +S D + V + +D I +W+AA G+ +L GH + +
Sbjct: 1083 GTCTQTLEGHGDSVWSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVHSVA 1142
Query: 590 VHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQL 649
P R+A S DG +WD G + E + FSPDG + +
Sbjct: 1143 FSPDGQRVA-SGSIDGTIKIWDAASGTCTQTLEGHGGWVQSVAFSPDGQRVASGSSDKTI 1201
Query: 650 YILNTGQG 657
I +T G
Sbjct: 1202 KIWDTASG 1209
|
Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1757 | ||||||
| 225431924 | 1756 | PREDICTED: uncharacterized protein LOC10 | 0.980 | 0.981 | 0.714 | 0.0 | |
| 356558137 | 1773 | PREDICTED: uncharacterized protein LOC10 | 0.970 | 0.962 | 0.628 | 0.0 | |
| 356532519 | 1777 | PREDICTED: uncharacterized protein LOC10 | 0.973 | 0.962 | 0.635 | 0.0 | |
| 225437555 | 1766 | PREDICTED: uncharacterized protein LOC10 | 0.969 | 0.964 | 0.616 | 0.0 | |
| 449433431 | 1729 | PREDICTED: uncharacterized protein LOC10 | 0.965 | 0.980 | 0.607 | 0.0 | |
| 42568419 | 1677 | WD40/YVTN repeat and Bromo-WDR9-I-like d | 0.936 | 0.980 | 0.592 | 0.0 | |
| 297795697 | 1662 | transducin family protein [Arabidopsis l | 0.926 | 0.979 | 0.593 | 0.0 | |
| 296083262 | 1569 | unnamed protein product [Vitis vinifera] | 0.670 | 0.750 | 0.732 | 0.0 | |
| 357449001 | 1844 | Bromodomain and WD repeat-containing pro | 0.968 | 0.922 | 0.526 | 0.0 | |
| 356501869 | 1719 | PREDICTED: uncharacterized protein LOC10 | 0.928 | 0.949 | 0.539 | 0.0 |
| >gi|225431924|ref|XP_002277060.1| PREDICTED: uncharacterized protein LOC100248159 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2382 bits (6174), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1272/1780 (71%), Positives = 1436/1780 (80%), Gaps = 57/1780 (3%)
Query: 1 MALRKYIPSADAPSGTMKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFL 60
MAL+KYIPS DAPS +MKPLSFSSKV E QLA + S + DVD+DLREVYFLIMHFL
Sbjct: 1 MALQKYIPSGDAPSVSMKPLSFSSKVQEKVQLADPEGSPTMDADVDIDLREVYFLIMHFL 60
Query: 61 STGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPH 120
S GPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGL SGDENDDG SFPLSYNKLVERYPH
Sbjct: 61 SAGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLRSGDENDDGSSFPLSYNKLVERYPH 120
Query: 121 IEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEIDH 180
I KDHLVKLLKQLI++T+ PS+ MI G+ PNAADVPTLLG GSFSLL D DKG NE++
Sbjct: 121 IGKDHLVKLLKQLILSTTHPSQGMIRGNVPNAADVPTLLGTGSFSLLGNDMDKGHNEVNP 180
Query: 181 PPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVR 240
PP HMRWPHM ADQVRGL LREIGGGFTRH+RAPSIRAACYA+AKPSTMVQKMQNIK++R
Sbjct: 181 PPIHMRWPHMQADQVRGLSLREIGGGFTRHNRAPSIRAACYAVAKPSTMVQKMQNIKKLR 240
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV 300
GHRNAVYCAIFDR+GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV
Sbjct: 241 GHRNAVYCAIFDRTGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV 300
Query: 301 ASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360
AS+SNDCIIRVWRLPDGLPISVLRGHT AVTAIAFSPRP SVYQLLSSSDDGTCRIWDAR
Sbjct: 301 ASSSNDCIIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSSVYQLLSSSDDGTCRIWDAR 360
Query: 361 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLAR--- 417
YSQFSPRIY+PRP D++AG+N PSSS GPQSHQIFCCAFNANGTVFVTGSSDTLAR
Sbjct: 361 YSQFSPRIYVPRPPDSIAGKNNVPSSSNGPQSHQIFCCAFNANGTVFVTGSSDTLARVHL 420
Query: 418 ---VWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 474
VWNACK N D+SDQPNHE+D+LSGHENDVNYVQFSGCAV+SRFS+A+SSKE++ PKF
Sbjct: 421 MISVWNACKSNPDESDQPNHEMDILSGHENDVNYVQFSGCAVSSRFSVAESSKEENVPKF 480
Query: 475 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQ 534
KNSWF HDNIVTCSRDGSAIIWIPRSRRSH K RWT+AYHLKVPPPPMPPQPPRGGPRQ
Sbjct: 481 KNSWFTHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPMPPQPPRGGPRQ 540
Query: 535 RILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFN 594
RILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA DGSLVHSLTGHTESTYVLDVHPFN
Sbjct: 541 RILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHTESTYVLDVHPFN 600
Query: 595 PRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 654
PRIAMSAGYDGKTIVWDIWEG PIRIY+ +RF+LVDGKFSPDG SIILSDDVGQLYIL+T
Sbjct: 601 PRIAMSAGYDGKTIVWDIWEGTPIRIYDTARFKLVDGKFSPDGTSIILSDDVGQLYILST 660
Query: 655 GQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPY 714
GQGESQKDA YDQFFLGDYRPL+QDTYGNVLDQETQLAP+RRN+QD LCD+ MIPYPEPY
Sbjct: 661 GQGESQKDAMYDQFFLGDYRPLIQDTYGNVLDQETQLAPYRRNMQDLLCDATMIPYPEPY 720
Query: 715 QTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWE 774
Q+MYQQRRLGALGIEWRPSSL+LAVGPDF+LDQ YQ+ PL DLDV+IDPLPEFIDVMDWE
Sbjct: 721 QSMYQQRRLGALGIEWRPSSLRLAVGPDFNLDQDYQMLPLPDLDVLIDPLPEFIDVMDWE 780
Query: 775 PENEVQSDDNDSEYNVAEEYST-EEKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRK 833
PENEVQ+DD DSEYNV EEYST E+GSLSS SSGD ECSAEDS+ + DGLRRSKRK
Sbjct: 781 PENEVQTDDTDSEYNVTEEYSTGGEQGSLSSNSSGDPECSAEDSDVENSHKDGLRRSKRK 840
Query: 834 KQKAEVEIMTSSGRRVKRRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRPQRA 893
KQKAE EIMT SGRRVKRR LDE +GN+ N RTRKS + +K S + SS SKSLRPQRA
Sbjct: 841 KQKAETEIMTFSGRRVKRRNLDEFDGNSLRSN-RTRKSRSGRKVSHKNSSKSKSLRPQRA 899
Query: 894 AARNARSFFSKITGASTDGEDVDGSEGELSESESDLQDSYIESEESGRSLLNEQRKHSKG 953
AARNA + FS++ G STDGED DGSEG+LSESES L+DS IES+ES SL NEQ KHSKG
Sbjct: 900 AARNALTLFSRMKGTSTDGEDEDGSEGDLSESESSLEDSNIESDESDGSLQNEQCKHSKG 959
Query: 954 KGISLDDSEDVTKL-DTPESHVNAG-IRRLVLKLPVRDSNKHELQERTSDKCNQLVSVIG 1011
K +SLD+ ED+ K + PES +NAG RRLVLK P+RDSN+ L NQ ++G
Sbjct: 960 KEVSLDEFEDMDKQHEHPESCMNAGNRRRLVLKFPIRDSNRLLLAPE-----NQ-ADLVG 1013
Query: 1012 TSSEAHQEATEGNGNRVSYVGNNCSSVDANCGLMERRGRGQFDKLEDYLNLSNGYKDGKI 1071
+SS+A QEA+E N N +S SS DANC +ERR RGQ +K+ED+L+L GYKDGKI
Sbjct: 1014 SSSKAPQEASEVNRNHLSSQDLGYSSSDANCNRIERRERGQPEKIEDHLDLFEGYKDGKI 1073
Query: 1072 RWGGVRARSSKRLKIGEMMPLDANNGSGIHLDDDKEKESEVNGHVKPEKDGIDISCGEEI 1131
RWGGV+AR+SKRL++ E MP D + S +D E+ +NG +PEK+ IS EI
Sbjct: 1074 RWGGVKARTSKRLRVVEPMPSDTDARSRQCIDGHDATENTINGFQEPEKNYDRISPHSEI 1133
Query: 1132 TNCGDNTDEVPLKNVKNLSGENNDVYSGDASCK-EQQSGFSELNYYDE-SKCVNTTDEDT 1189
+ T ++ N ++ N V DA+ ++ S F+E YDE K VN DT
Sbjct: 1134 KYHVEETGKMAHMNGQHFG--NGAVEGLDATSNGKKHSSFNECMNYDEPPKQVNMVAGDT 1191
Query: 1190 TPYPNHLQNGTIQPSELKEILTPVSTKLRIRSKRILRDAD----------VENQNNG-CD 1238
NGT P LKE T STKLRIRSK+IL D + VE+ +NG CD
Sbjct: 1192 AASSVQHSNGTDHPPHLKESSTS-STKLRIRSKKILEDPEIPSDPKIKSSVEDWSNGRCD 1250
Query: 1239 ALHGSSLDIKPNSLPEVLESDGTNRTSSDRGA-DGSQRLNAQIDSTSEHDPLGSHSHSHD 1297
L S L+I EV + D T+R SD G +G + A I+ S S D
Sbjct: 1251 TLSESQLEIA-----EVPDCDDTDRPHSDHGDWNGLLKSEAAIEQNSR-------SVLQD 1298
Query: 1298 PLGSHSHSHSRKMFNVVYRRSKTNRDRTNSEGDGGGVGESTLNANNNN------FHESAT 1351
G +SH ++ KM+N VYRRS++ R RTNSEG+GGG+ EST NA+N+N FHE+ T
Sbjct: 1299 SQGLYSHVNN-KMYNAVYRRSRSYRTRTNSEGEGGGMEESTSNASNHNLDSGMDFHEATT 1357
Query: 1352 DGSRRTRSMGLKTTTCDPDNVSSNLRLEQHNQPEDMYSGHNR-STSRC-QLPHEEWGSSS 1409
DG+RRTRSMGLK TT DPD SNL+L + ED ++ S +R +LP EEW SSS
Sbjct: 1358 DGARRTRSMGLKATTRDPDVTCSNLKLRLGHGSEDTLKSVDKFSVNRSDELPCEEWMSSS 1417
Query: 1410 KMTVGLRSTRNRRTSYLFCDS--SPIDRRKTHQSLRKGSWLMLSTHEEGSRYIPQLGDEV 1467
+MTVGLRS RNRR SY D+ SP++RRK HQS +K SWLMLS H E RYIPQLGDEV
Sbjct: 1418 RMTVGLRSARNRRASYHVRDTSPSPMERRKPHQSSKKVSWLMLSMHVE-PRYIPQLGDEV 1476
Query: 1468 VYLRQGHQEYINYSGSREVGPWITVKGNIRAVEFCKVESLEYATASGSGDSCCKMTLKFI 1527
VYLRQGHQEYI YSGS E GPW +VKG IRAVEFCKVE LEY+ +GSGDSCCKMTL+F+
Sbjct: 1477 VYLRQGHQEYITYSGSHEAGPWTSVKGIIRAVEFCKVEGLEYSPFAGSGDSCCKMTLQFV 1536
Query: 1528 DPTSSVSNMTFRLTLPEVTGFPDFLVERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWW 1587
DPTS V TF+LTLPEVT FPDFLVERTR+DAAIQRNWT RDKC+VWWKNE +EDGSWW
Sbjct: 1537 DPTSHVFGKTFKLTLPEVTSFPDFLVERTRYDAAIQRNWTSRDKCRVWWKNEGEEDGSWW 1596
Query: 1588 DGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFDSDTQWEQPRIDDDNRNK 1647
DGR+LSVK +S EFPDSPW+RY ++Y++EPTETHLHSPWEL+D TQWEQP IDD++RNK
Sbjct: 1597 DGRILSVKARSPEFPDSPWDRYVIRYRSEPTETHLHSPWELYDIGTQWEQPHIDDESRNK 1656
Query: 1648 LLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEA 1707
LLS+ AKLEQS ++ QD YG+QKLKQVSQK+NF NRFPVPLSL+VIQSRL+N YYR +EA
Sbjct: 1657 LLSSLAKLEQSGDKPQDYYGIQKLKQVSQKSNFLNRFPVPLSLEVIQSRLKNQYYRSMEA 1716
Query: 1708 VKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1747
VKHD+ VMLSNAE+YF +N +LS K++RLS+ TR LSS+
Sbjct: 1717 VKHDVKVMLSNAETYFVKNAELSMKVRRLSEWFTRMLSSI 1756
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356558137|ref|XP_003547364.1| PREDICTED: uncharacterized protein LOC100818665 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2162 bits (5603), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1140/1814 (62%), Positives = 1366/1814 (75%), Gaps = 108/1814 (5%)
Query: 1 MALRKYIPSADAPSGTMKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFL 60
MAL+KY PS +APS MK LSFSSKV + A+L ++ + +DVD+DLRE+YFLIMHFL
Sbjct: 1 MALQKYAPSGNAPSVNMKHLSFSSKVPKKAELDEANLNH--NMDVDIDLREIYFLIMHFL 58
Query: 61 STGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPH 120
S GPCH+T+ QFWNELLEHQLLPRRYHAWYSR+G SGD++DDG+SFPL+YN LVERY H
Sbjct: 59 SAGPCHKTHLQFWNELLEHQLLPRRYHAWYSRTGACSGDKDDDGLSFPLNYNMLVERYSH 118
Query: 121 IEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEIDH 180
IEKDHLVKLLKQL++NT+SPS M G+APNAADVPTLLG GSFSLLSYDRDK E+
Sbjct: 119 IEKDHLVKLLKQLLLNTASPSLGMNLGNAPNAADVPTLLGSGSFSLLSYDRDK-MKEVKW 177
Query: 181 PPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVR 240
PP HMRWPHM A+QV GL LREIGGGF RHHRAPSIRAACYAIAKPSTMVQKMQNIKR+R
Sbjct: 178 PPPHMRWPHMKANQVHGLNLREIGGGFPRHHRAPSIRAACYAIAKPSTMVQKMQNIKRLR 237
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV 300
GHRNAVYCAIFDR+GRYVITGSDDRLVKIWSMETAYCLASCRGH+GDITDLAVSSNNALV
Sbjct: 238 GHRNAVYCAIFDRAGRYVITGSDDRLVKIWSMETAYCLASCRGHDGDITDLAVSSNNALV 297
Query: 301 ASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360
AS+SNDC+IRVWRLPDGLPISVLRGHT AVTAIAFSPRP +VYQLLSSSDDGTCRIWDAR
Sbjct: 298 ASSSNDCVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPNAVYQLLSSSDDGTCRIWDAR 357
Query: 361 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARV-- 418
Y+Q SPR+Y+PRPSD+V G++ PSSS PQSHQIFCCAFNANGTVFVTGSSD LARV
Sbjct: 358 YTQSSPRLYVPRPSDSVIGKSNGPSSSTVPQSHQIFCCAFNANGTVFVTGSSDNLARVFL 417
Query: 419 --WNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKN 476
WNACK + DD+ QP HEIDVLSGHENDVNYVQFSGCAVASRFS A++ KE++ PKFKN
Sbjct: 418 QVWNACKLSMDDTGQPVHEIDVLSGHENDVNYVQFSGCAVASRFSTAETWKEENIPKFKN 477
Query: 477 SWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI 536
SW HDNIVTCSRDGSAIIWIP+SRRSH K+ RWT+AYHL+VPPPPMPPQP RGGPRQRI
Sbjct: 478 SWLNHDNIVTCSRDGSAIIWIPKSRRSHGKSGRWTRAYHLRVPPPPMPPQPQRGGPRQRI 537
Query: 537 LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR 596
LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA+DGSLVHSLTGHTESTYVLDVHPFNPR
Sbjct: 538 LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNPR 597
Query: 597 IAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 656
IAMSAGYDG+TIVWDIWEG+PIR YEISRF+LVDGKFSPDG SIILSDDVGQLYIL+TGQ
Sbjct: 598 IAMSAGYDGRTIVWDIWEGLPIRTYEISRFKLVDGKFSPDGTSIILSDDVGQLYILSTGQ 657
Query: 657 GESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQT 716
GESQKDAKYDQFFLGDYRPL+QDT+GNVLDQETQ+ P+RR+LQD LCDSAMIPYPEPYQ+
Sbjct: 658 GESQKDAKYDQFFLGDYRPLIQDTHGNVLDQETQIVPYRRSLQDLLCDSAMIPYPEPYQS 717
Query: 717 MYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEPE 776
+QQRRLGALG EWRPSSL+LAVGPDFSLD Y + PLADLD++ +PLPEFID M+WEPE
Sbjct: 718 EFQQRRLGALGFEWRPSSLRLAVGPDFSLDPDYHMLPLADLDLLTEPLPEFIDAMEWEPE 777
Query: 777 NEVQSDDNDSEYNVAEEYSTE-EKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRKKQ 835
EV SDD DSEYNV E++S++ EKG SS +SGDS CS ++SE + MD +RRSKRKKQ
Sbjct: 778 VEVFSDDTDSEYNVTEDFSSKGEKGCSSSNASGDSGCSTDNSEGEDTCMDNIRRSKRKKQ 837
Query: 836 KAEVEIMTSSGRRVKRRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRPQRAAA 895
K E E+MTSSGRRVKRR LDE +GN FG+ R+RK + QK+ RRKSS SKS RPQRAAA
Sbjct: 838 KTETEVMTSSGRRVKRRNLDERDGN-TFGSSRSRKGKSVQKTLRRKSSKSKSSRPQRAAA 896
Query: 896 RNARSFFSKITGASTDGEDVDGSEGELSESESDLQDSYIESEESGRSLLNEQRKHSKGKG 955
RNA FSKITG TDGE+ D G+ S SES LQ+S I+S+ES +L NEQ +SKGK
Sbjct: 897 RNALHLFSKITGTPTDGEE-DSLVGDFSGSESTLQESNIDSDESDGTLQNEQLNYSKGKE 955
Query: 956 ISLDDSEDVTKLDTPESHVN-AGIRRLVLKLPVRDSNKHELQERTSDKCNQLVSVIGTSS 1014
+S +SE+ + E+HVN RRLVLKLP RD +K ++++ + ++G+SS
Sbjct: 956 VSYYESENTKSHELTETHVNLMNKRRLVLKLPNRDISK------STNEFDYQTELVGSSS 1009
Query: 1015 EAHQEATEGNGNRVSYVGNNCSSVDANCGLMERRGRGQFDKLEDYLNLSNGYKDGKIRWG 1074
++ QEAT+ NGN S + S + +E + + D++ D+++L GKIRWG
Sbjct: 1010 KSSQEATDFNGNGPSSKDSGYYSGSTSYPTVETTDQAKLDQVTDHVDLL-----GKIRWG 1064
Query: 1075 GVRARSSKRLKIGEMMPLDANNGSGI---HLDDDKEKESEVNGHVKPEKDGIDISCGEEI 1131
VRARSSK L++GE MP D N SG HLD EKE+ +GH K +K+ ++ EI
Sbjct: 1065 MVRARSSKPLRVGEAMPSDTNPYSGKCPNHLD---EKENVGSGHEKEDKNFSALTPELEI 1121
Query: 1132 TNCGDNTDEVPLKNVKNLSGENNDVYSG------DASCKEQQSGFSELNYYDES------ 1179
D+ L ++ ++ E +V SG +AS + + +Y +S
Sbjct: 1122 -----QKDDHKLDSLTEINYEKENVSSGHEKEDKNASALTPELEIQKDDYKVDSLTEINE 1176
Query: 1180 KCVNTTDEDTTP-------------------------YPNHLQNGTIQPSELKEI----L 1210
C TT + P P + +I SE+ ++ +
Sbjct: 1177 NCAGTTSQPFNPTEDGREITASSNCRDKDESLISAYVIPQDIVPASISYSEVDQLPELNI 1236
Query: 1211 TPVSTKLRIRSKRILRDADVEN---------QNNGCDALHGSSLDIKPNSLPEVLESDGT 1261
S ++RSKR RD + + +N+ C ++ + N V++
Sbjct: 1237 GFPSVLTKLRSKRGSRDPESPSKHETKSSVLKNSACSTNDKNNFN---NEQHVVVDDHNN 1293
Query: 1262 NRTSSDRGADGSQRLNAQI--DSTSEHDPLGSHSHSHDPLGSHSHSHSRKMFNVVYRRSK 1319
R +S++G +GSQ ++ QI +STS+ P HS KM+ VYRRS+
Sbjct: 1294 TRVASNQGENGSQEVDPQIRQNSTSQDLP-------------EPHSQRDKMYKAVYRRSR 1340
Query: 1320 TNRDRTNSEGDGGGVGESTLNANNNNFHESA------TDGSRRTRSMGLKTTTCDPDNVS 1373
++R TN D G GE N N+NF+ +A + S+ L+ TTCDP+
Sbjct: 1341 SHRAVTNL-ADSSGQGEFNSNGRNSNFNATANFSNGTNEAIHTNGSLELEPTTCDPNYER 1399
Query: 1374 SNLRLEQHNQPEDMYSGHNRSTSRCQLPHEEWGSSSKMTVGLRSTRNRRTSYLFCDSSPI 1433
+NL++ Q + S N STS QL EE GS+SK+TVGLRS RNRR+SY C++SP+
Sbjct: 1400 NNLKVLQGPGNCMVKSPQNVSTSGGQLTEEERGSNSKLTVGLRSNRNRRSSYNICETSPV 1459
Query: 1434 DRRKTHQSLRKGSWLMLSTHEEGSRYIPQLGDEVVYLRQGHQEYINYSGSREVGPWITVK 1493
++RK+ QS +GSWL+LSTHEEG RYIPQ GDEV YLRQGHQEYI+Y RE GPW+++K
Sbjct: 1460 NKRKSLQSATRGSWLLLSTHEEGCRYIPQQGDEVAYLRQGHQEYIDYCRKRESGPWVSLK 1519
Query: 1494 GNIRAVEFCKVESLEYATASGSGDSCCKMTLKFIDPTSSVSNMTFRLTLPEVTGFPDFLV 1553
G+IRAVE+C+V+SLEY+ GSGDSCCKM L+F+DP SSV +F+LTLPEVT FPDFLV
Sbjct: 1520 GHIRAVEYCRVQSLEYSHLPGSGDSCCKMNLQFVDPNSSVVGKSFKLTLPEVTSFPDFLV 1579
Query: 1554 ERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQY 1613
ERTRFDAA+QRNWT RDKC+VWWKNE G+WWDGR+L +K KSSEFPDSPWE YTV+Y
Sbjct: 1580 ERTRFDAAMQRNWTRRDKCRVWWKNEDSSSGNWWDGRILCMKAKSSEFPDSPWESYTVRY 1639
Query: 1614 KTEPTETHLHSPWELFDSDTQWEQPRIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQ 1673
K++ TETHLHSPWELFD+DT+WEQP IDDD RNKL S KL+QS N VQD+YGV +LK+
Sbjct: 1640 KSDLTETHLHSPWELFDADTEWEQPHIDDDMRNKLQSTLTKLQQSGNPVQDRYGVHELKK 1699
Query: 1674 VSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKI 1733
+S K+ F NRFPVP+S+++IQSRLENNYYR LEA+KHD++++LSNA ++ ++ LS KI
Sbjct: 1700 ISNKSKFINRFPVPISIELIQSRLENNYYRSLEALKHDVSILLSNATTFLEKDAALSAKI 1759
Query: 1734 KRLSDLVTRTLSSL 1747
KRLS+ TR LSSL
Sbjct: 1760 KRLSEWFTRALSSL 1773
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356532519|ref|XP_003534819.1| PREDICTED: uncharacterized protein LOC100819598 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2159 bits (5595), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1153/1813 (63%), Positives = 1362/1813 (75%), Gaps = 102/1813 (5%)
Query: 1 MALRKYIPSADAPSGTMKPLSFSSKVHENAQLAGSDTSQPAE-LDVDVDLREVYFLIMHF 59
MAL+KY PS +APS +K LSFSSKV + A+L D + P +DVD+DLRE+YFLIMHF
Sbjct: 1 MALQKYAPSGNAPSVNIKHLSFSSKVPKKAEL---DEANPNHNMDVDIDLREIYFLIMHF 57
Query: 60 LSTGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYP 119
LS GPCH+TY QFWNELLEHQLLPRRYHAWYSR+G SGD++DDG+SFPL+YN LVERY
Sbjct: 58 LSAGPCHKTYIQFWNELLEHQLLPRRYHAWYSRTGACSGDKDDDGLSFPLNYNMLVERYS 117
Query: 120 HIEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEID 179
HIEKDHLVKLLKQL++NT+SPS M G+APNAADVPTLLG GSFSLLSYDRDK E+
Sbjct: 118 HIEKDHLVKLLKQLLLNTASPSLGMNLGNAPNAADVPTLLGSGSFSLLSYDRDK-MKEVK 176
Query: 180 HPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRV 239
PP HMRWPHM A+QV GL LREIGGGF RHHRAPSIRAACYA+AKPSTMVQKMQNIKR+
Sbjct: 177 RPPPHMRWPHMKANQVHGLSLREIGGGFPRHHRAPSIRAACYALAKPSTMVQKMQNIKRL 236
Query: 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAL 299
RGHRNAVYCAIFDRSGRYV+TGSDDRLVKIWSMETAYCLASCRGH+GDITDLAVSSNNAL
Sbjct: 237 RGHRNAVYCAIFDRSGRYVVTGSDDRLVKIWSMETAYCLASCRGHDGDITDLAVSSNNAL 296
Query: 300 VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
VAS+SNDC+IRVWRLPDGLPISVLRGHT AVTAIAFSPR ++YQLLSSSDDGTCRIWDA
Sbjct: 297 VASSSNDCVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRLNALYQLLSSSDDGTCRIWDA 356
Query: 360 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARV- 418
RY+Q SPR+Y+PRPSD+V G++ PSSS PQS QIFCCAFNANGTVFVTGSSD LARV
Sbjct: 357 RYTQSSPRLYVPRPSDSVIGKSSGPSSSTVPQSRQIFCCAFNANGTVFVTGSSDNLARVF 416
Query: 419 ---WNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475
WNACK + DD+DQP HEIDVLSGHENDVNYVQFSGCAVASRFS A++ KE++ PKFK
Sbjct: 417 LQVWNACKLSMDDTDQPIHEIDVLSGHENDVNYVQFSGCAVASRFSTAETLKEENIPKFK 476
Query: 476 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR 535
NSW HDNIVTCSRDGSAIIWIP+SRRSH K+ RWT+AYHL+VPPPPMPPQP RGGPRQR
Sbjct: 477 NSWLNHDNIVTCSRDGSAIIWIPKSRRSHGKSGRWTRAYHLRVPPPPMPPQPQRGGPRQR 536
Query: 536 ILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNP 595
ILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA+DGSLVHSLTGHTESTYVLDVHPFNP
Sbjct: 537 ILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNP 596
Query: 596 RIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 655
RIAMSAGYDG+TIVWDIWEG+PIR YEISRF+LVDGKFS DG SIILSDDVGQLYIL+TG
Sbjct: 597 RIAMSAGYDGRTIVWDIWEGMPIRTYEISRFKLVDGKFSSDGTSIILSDDVGQLYILSTG 656
Query: 656 QGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQ 715
QGESQKDAKYDQFFLGDYRPL+QDT+GNVLDQETQ+ P+RRNLQD LCDSAMIPYPEPYQ
Sbjct: 657 QGESQKDAKYDQFFLGDYRPLIQDTHGNVLDQETQIVPYRRNLQDLLCDSAMIPYPEPYQ 716
Query: 716 TMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEP 775
+ +QQRRLGALG+EWRPSSL+LAVGPDFSLD Y + PLADLD++ +PLPEFID M+WEP
Sbjct: 717 SEFQQRRLGALGLEWRPSSLRLAVGPDFSLDPDYHMLPLADLDLLTEPLPEFIDAMEWEP 776
Query: 776 ENEVQSDDNDSEYNVAEEY-STEEKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRKK 834
E EV SDD DSEYNV E + S EKG SS +SGDS CS ++SE + MD +RRSKRKK
Sbjct: 777 EVEVFSDDTDSEYNVTEGFFSKGEKGGSSSNASGDSGCSTDNSEGEDTCMDSIRRSKRKK 836
Query: 835 QKAEVEIMTSSGRRVKRRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRPQRAA 894
QKAE E+MTSSGRRVKRR LDE +GN FG+ R+RK + QK+SRRKSS SKS RPQRAA
Sbjct: 837 QKAETEVMTSSGRRVKRRNLDERDGNT-FGSSRSRKGKSVQKTSRRKSSKSKSSRPQRAA 895
Query: 895 ARNARSFFSKITGASTDGEDVDGSEGELSESESDLQDSYIESEESGRSLLNEQRKHSKGK 954
ARNA FSKITG TDGE+ D G+ S SES LQ+S I+S+ESG +L NEQ +SKGK
Sbjct: 896 ARNALHLFSKITGTPTDGEE-DSLVGDFSGSESTLQESNIDSDESGGTLQNEQLNYSKGK 954
Query: 955 GISLDDSEDVTKLDTPESHVNAGIRRLVLKLPVRDSNKHELQERTSDKCNQLVSVIGTSS 1014
+S +SED + E+HVN+ +RLVLKLP RD +K ++++ ++G+SS
Sbjct: 955 EVSYYESEDTKSHELTETHVNSMNKRLVLKLPNRDISK------STNEFGYQAELVGSSS 1008
Query: 1015 EAHQEATEGNGNRVSYVGNNCSSVDANCGLMERRGRGQFDKLEDYLNLSNGYKDGKIRWG 1074
+ QEAT+ NGNR S + S + +E+ + + ++ D+++L GKIRWG
Sbjct: 1009 KTAQEATDFNGNRPSSKDSGYCSGSTSYPAVEKTDQAKLGQVTDHVDLL-----GKIRWG 1063
Query: 1075 GVRARSSKRLKIGEMMPLDANNGSGI---HLDDDKEKESEVNGH-------------VKP 1118
VRARSSK L++GE MP D + SG HLD EKE+ +GH V P
Sbjct: 1064 MVRARSSKPLRVGEAMPSDTDPYSGKCPNHLD---EKENVSSGHEKEDKNFSALTPEVTP 1120
Query: 1119 E----KDGIDISCGEEITNCGDNTDEVPLKNVKNLSGEN----------NDVYSGDA--S 1162
E KD + EI +N K KN S D Y D+
Sbjct: 1121 ELEIHKDDYRVDSLTEINGKKENAISGHEKEDKNFSALTPELTPELEIQKDDYKVDSLTE 1180
Query: 1163 CKEQQSGFSE--LNYYDE-------SKCVNTTDEDTTPY--PNHLQNGTIQPSELKEILT 1211
E +G + N ++ S C + + + Y P + +I SE+ ++
Sbjct: 1181 INENCAGTTSQPFNLTEDGGEITASSNCRDKNESLISAYVIPQDIVTASIGYSEVDQLPE 1240
Query: 1212 P------VSTKLRIRSKRILRDADVENQ-NNGCDALHGSSLDIKPN-SLPEVLESDGTN- 1262
P VSTKLR SKR RD + ++ L S+ N +L V+ D N
Sbjct: 1241 PNIGFACVSTKLR--SKRGSRDPESPSKLETKSSVLKNSACSTNDNKNLNNVVVDDSNNT 1298
Query: 1263 RTSSDRGADGSQRLNAQI--DSTSEHDPLGSHSHSHDPLGSHSHSHSRKMFNVVYRRSKT 1320
R +S+ G +GSQ ++ QI +STS+ P HSH KM+ VYRRS++
Sbjct: 1299 RVASNHGENGSQEVDPQIRQNSTSQDLP-------------EPHSHRDKMYKAVYRRSRS 1345
Query: 1321 NRDRTNSEGDGGGVGESTLNANNNNFHESAT------DGSRRTRSMGLKTTTCDPDNVSS 1374
+R TN D G GES N N+NF+ +A + S+ L+ T+ DP+ +
Sbjct: 1346 HRAVTNL-ADSSGQGESNSNGRNSNFNAAANFSNGTYEAIHTNGSLELEPTSSDPNYERN 1404
Query: 1375 NLRLEQHNQPEDMYSGHNRSTSRCQLPHEEWGSSSKMTVGLRSTRNRRTSYLFCDSSPID 1434
NL++ Q + S N STS QL EE S+SK+TVGLRSTRNRR+SY ++SP++
Sbjct: 1405 NLKVLQGPGNCIVKSPQNVSTSGGQLTEEERCSNSKLTVGLRSTRNRRSSYNIRETSPVN 1464
Query: 1435 RRKTHQSLRKGSWLMLSTHEEGSRYIPQLGDEVVYLRQGHQEYINYSGSREVGPWITVKG 1494
+RK+ QS +GSWL+LSTHEEG RYIPQ GDEVVYLRQGHQEYINY RE GPW+++KG
Sbjct: 1465 KRKSLQSATRGSWLLLSTHEEGCRYIPQQGDEVVYLRQGHQEYINYCRKRESGPWVSLKG 1524
Query: 1495 NIRAVEFCKVESLEYATASGSGDSCCKMTLKFIDPTSSVSNMTFRLTLPEVTGFPDFLVE 1554
+IRAVE+C+V+SLEY+ GSGDSCCKM L F+DP SSV +F+LTLPEVT FPDFLVE
Sbjct: 1525 HIRAVEYCRVQSLEYSHLPGSGDSCCKMNLLFVDPNSSVVGKSFKLTLPEVTSFPDFLVE 1584
Query: 1555 RTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYK 1614
R RFD A+QRNWT RDKC+VWWKNE + G+WWDGR+L VK KSSEFPDSPWE TV+YK
Sbjct: 1585 RIRFDTAMQRNWTRRDKCRVWWKNEDNSSGNWWDGRILCVKAKSSEFPDSPWESCTVRYK 1644
Query: 1615 TEPTETHLHSPWELFDSDTQWEQPRIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQV 1674
++ TETHLHSPWELFD+DT+WEQP IDDD RNKL SA KL+QS N VQD+YGV +LK++
Sbjct: 1645 SDLTETHLHSPWELFDADTEWEQPHIDDDMRNKLQSALTKLQQSGNTVQDRYGVHELKKI 1704
Query: 1675 SQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIK 1734
S K+ F NRFPVP+S+++IQSRLENNYYR LEA+KHD+ ++LSNA ++ ++ LS KIK
Sbjct: 1705 SNKSKFINRFPVPISIELIQSRLENNYYRSLEALKHDVTILLSNATTFLEKDAVLSAKIK 1764
Query: 1735 RLSDLVTRTLSSL 1747
RLS+ TRTLSSL
Sbjct: 1765 RLSEWFTRTLSSL 1777
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225437555|ref|XP_002270469.1| PREDICTED: uncharacterized protein LOC100248563 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2036 bits (5276), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1116/1809 (61%), Positives = 1320/1809 (72%), Gaps = 105/1809 (5%)
Query: 1 MALRKYIPSADAPSGTMKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFL 60
M +K S++APS +M PLSFS+K+HE Q +T DVD+DLREVYFLIMHFL
Sbjct: 1 MDFQKCKSSSEAPSLSMVPLSFSNKLHERPQCQERNTDHVVA-DVDIDLREVYFLIMHFL 59
Query: 61 STGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPH 120
S GPC +T+GQFWNELLEH+LLPRRYHAWYSRSG SGDEND+G SFPL YN LVERYPH
Sbjct: 60 SAGPCQKTFGQFWNELLEHELLPRRYHAWYSRSGACSGDENDNGFSFPLGYNNLVERYPH 119
Query: 121 IEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEIDH 180
I KDHLVKLLKQL++NT+ P +GG+AP+A DVPTLLG GSFSLL + K ++
Sbjct: 120 IGKDHLVKLLKQLMLNTAPPLHGEVGGNAPSAVDVPTLLGTGSFSLLDCHKKKENKQVKP 179
Query: 181 PPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVR 240
PP ++RWPHM ADQVRGL LREIGGGFT+HHRAPSIR+ACYAIAKPSTMVQ+MQN+K++R
Sbjct: 180 PPDYLRWPHMQADQVRGLSLREIGGGFTKHHRAPSIRSACYAIAKPSTMVQRMQNMKKLR 239
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV 300
GHR+AVYCAIFDRSGRYVITGSDDRLVKIWSMETA+CLASCRGHEGDITDLAVSSNN LV
Sbjct: 240 GHRDAVYCAIFDRSGRYVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNVLV 299
Query: 301 ASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360
ASASND IIRVWRLPDGLPISVLRGHT AVTAIAFSPRP SVYQLLSSSDDG+CRIWDAR
Sbjct: 300 ASASNDFIIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSSVYQLLSSSDDGSCRIWDAR 359
Query: 361 YSQFSPRIYIPRPSDAVAGRNMAPS-----SSAGPQSHQIFCCAFNANGTVFVTGSSDTL 415
+SQ SPRIY+P+P DAVAG+N PS SS GPQSHQI CCAFNA+GTVFVTGSSDT
Sbjct: 360 FSQCSPRIYLPKPPDAVAGKNSVPSMNGTSSSNGPQSHQILCCAFNASGTVFVTGSSDTF 419
Query: 416 ARV---WNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 472
ARV W+ACK +TDDS+QPNHEIDVLSGHENDVNYVQFS CA ASR S++D+ KE+S P
Sbjct: 420 ARVHQVWSACKSSTDDSEQPNHEIDVLSGHENDVNYVQFSACAGASRSSVSDTFKEESLP 479
Query: 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGP 532
KFKNSWFCHDNIVTCSRDGSAIIWIPRSRR H K RWT+AYHLKVPPPPMPPQPPRGGP
Sbjct: 480 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRYHGKVGRWTRAYHLKVPPPPMPPQPPRGGP 539
Query: 533 RQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHP 592
RQR+LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH+ STYVLDVHP
Sbjct: 540 RQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHSASTYVLDVHP 599
Query: 593 FNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYIL 652
FNPRIAMSAGYDGKTIVWDIWEGIPIR YEI RF+LVDGKFSPDG SI+LSDDVGQ+Y+L
Sbjct: 600 FNPRIAMSAGYDGKTIVWDIWEGIPIRTYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLL 659
Query: 653 NTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPE 712
NTGQGESQKDAKYDQFFLGDYRPL++DT GNVLDQETQLAPHRRN+QDPLCDS+MIPY E
Sbjct: 660 NTGQGESQKDAKYDQFFLGDYRPLIRDTIGNVLDQETQLAPHRRNIQDPLCDSSMIPYSE 719
Query: 713 PYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMD 772
PYQTMYQQRRLGALGIEW PSS+ LAVGPDFSL Q YQ+ PLADLD +++PLPE +D +
Sbjct: 720 PYQTMYQQRRLGALGIEWHPSSINLAVGPDFSLGQEYQMPPLADLDRVMEPLPELVDAVY 779
Query: 773 WEPENEVQSDDNDSEYNVAEEYSTE-EKGSLSSTSS-GDSECSAEDSEDGENPMDGLRRS 830
WEPENEV SDD DSEYN+AEEYS+E E GSLS+ SS D ECSAED++ + DGLRRS
Sbjct: 780 WEPENEVISDDTDSEYNIAEEYSSEGEHGSLSAASSFSDPECSAEDTDVEHSHKDGLRRS 839
Query: 831 KRKKQKAEVEIMTSSGRRVKRRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRP 890
+RKK ++EVEIMTSSGRRVKRR L+E +G ++ RT+KS N +K S+R SS +SLRP
Sbjct: 840 RRKKYRSEVEIMTSSGRRVKRRNLNECDGTSS--RSRTKKSKNGRKVSKRNSSKIQSLRP 897
Query: 891 QRAAARNARSFFSKITGASTDGEDVDGSEGELSESESDLQDSYIESEESGRSLLNEQRKH 950
QRAA RNA + FS+IT ST+G+D +G E + S S+ +QDS +++ +S R+L N Q+K+
Sbjct: 898 QRAAKRNALNMFSQITETSTEGDDEEGLEDDSSGSDPMIQDSNMQNTKSDRNLQNVQQKY 957
Query: 951 SKGKGISLDDSEDVTKLDTPESHVNAG-IRRLVLKLPVRDSNKHELQERTSDKCNQLVSV 1009
+G+ SL++ E+ K PES NAG RRLVLK +RDS K E T KCN +
Sbjct: 958 QRGEQSSLNEFENAIKF--PESQSNAGNRRRLVLKFSLRDSKKSIPSEDTRPKCNTQADI 1015
Query: 1010 IGTSSE-AHQEATEGNGNRVSYVGNNCSSVDANCGLMERRGRGQF------DKLEDYLNL 1062
+ + S + E N +S + S A+ + R F ++ ED+L+
Sbjct: 1016 VHSPSRPPPKTVEEKETNLISEDPESSSMHAADLEQSQNHNRDDFIHKPRSEETEDHLDT 1075
Query: 1063 SNGYKDGKIRWGGVRARSSKRLKIGEMMPLDANNGSGIHLDDDKEKESEVNGHVKPEKDG 1122
S GYKD KIRWG V+ARSSKR + G+ + DA G + D ++NG KPE +G
Sbjct: 1076 SAGYKDNKIRWGEVKARSSKRFRSGDFVASDACTGFDVSFDVHNGNGKDINGQTKPE-NG 1134
Query: 1123 IDISCGEEITNCGDNTDEVPLKNVKNLSG--------ENNDVY-SGDASCKEQQSGFSEL 1173
S EI N E ++V+ +NN++ G+A+ G S L
Sbjct: 1135 CGNSSPSEIQNHAGELLEKLGRDVEPFGTGLENKDDVKNNELAPPGEANKSSSFQGLSLL 1194
Query: 1174 NYY------------------------DESKCVNTTDEDTTPYPNHLQNGTIQPSELKEI 1209
+ + DE + ++ + D T NH +LK
Sbjct: 1195 DDHQKIDASAISSNGNLNKQHKGWSGSDEFRDCDSLEMDETVGINHSH-------DLKGN 1247
Query: 1210 LTPVSTKLRIRSKRILRDADVENQNNGCDALHGSSLDIKPNSLPEVLESDGTNRTSSDRG 1269
S KLRIRSKRI+RD + P+ L V ++ + D
Sbjct: 1248 PPANSLKLRIRSKRIVRDPNF------------------PSKLKFVTGTEEPSNIGGDLM 1289
Query: 1270 ADGSQRL-NAQIDSTSEHDPLGSHSHSHDPLGSHSHSHSRKMFNVVYRRSKTNRDRTNSE 1328
+ R+ + QI E D + S P SHS S ++ ++ V++R+K+ RTN+E
Sbjct: 1290 SRSHSRMEHNQISEVPEEDKVIEMPSS--PHRSHSDS-DKQNYDAVHKRAKSYMARTNAE 1346
Query: 1329 GDGGGVGESTLNANNNN------FHESATDGSRRTRSMGLKTTTCDPDNVSSNLRL-EQH 1381
G GG + ES NA N N FHE+ TD RTRSM TT+ +P+NV S ++ E+
Sbjct: 1347 GYGGSMEESASNAGNYNYDSGIDFHEATTDAVHRTRSMVRDTTSQEPNNVMSRFKVREET 1406
Query: 1382 NQPEDMYSGHNRSTSRCQLPHEEWGSSSKMTVGLRSTRNRRTSYLFCDS--SPIDRRKTH 1439
++ + YS +R QL EEW SSS+M V RSTR RR Y D+ SP R ++
Sbjct: 1407 SKNAENYS----KKTRDQLQSEEWMSSSRMRVRSRSTRYRRGDY---DNYLSPSAGRISN 1459
Query: 1440 QSLRKGSWLMLSTHEEGSRYIPQLGDEVVYLRQGHQEYINYSGSR-EVGPWITVKGNIRA 1498
S RK SWLMLS HEEG RYIPQ GDEVVYLRQGHQEYI R EVGPW + K NIRA
Sbjct: 1460 FSGRKVSWLMLSEHEEGYRYIPQQGDEVVYLRQGHQEYIEKLNLRSEVGPWRSPKTNIRA 1519
Query: 1499 VEFCKVESLEYATASGSGDSCCKMTLKFIDPTSSVSNMTFRLTLPEVTGFPDFLVERTRF 1558
VE C VE L YA+ +GSGDSCCK+TLKF DP SSV TF+LTLPE+ F DF+VE+TR+
Sbjct: 1520 VEICSVEDLVYASLAGSGDSCCKITLKFTDPLSSVFGRTFKLTLPELINFSDFVVEKTRY 1579
Query: 1559 DAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPT 1618
DAAI RNWT RDKC VWW+N D GSWW+GR+L+V+ KS EFPDSPWERY V+YK +
Sbjct: 1580 DAAIGRNWTHRDKCLVWWRNGEDGGGSWWEGRILAVEAKSREFPDSPWERYVVKYKGD-A 1638
Query: 1619 ETHLHSPWELFDSDTQWEQPRIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKT 1678
E +LHSPWEL D D QWEQP+ID + R+KLLS+FAKLE SA+++QD YG+QK QV+QK
Sbjct: 1639 ENNLHSPWELHDPDIQWEQPQIDFEIRDKLLSSFAKLE-SAHKIQDYYGIQKFNQVAQKL 1697
Query: 1679 NFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSD 1738
+F NRFPVPL ++IQ+RLENNYYR LEAVKHDI VMLSNA+SYFGRN +LS+K+KRLSD
Sbjct: 1698 DFLNRFPVPLYPELIQARLENNYYRTLEAVKHDIMVMLSNAQSYFGRNAELSSKMKRLSD 1757
Query: 1739 LVTRTLSSL 1747
TRTLS L
Sbjct: 1758 WFTRTLSKL 1766
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449433431|ref|XP_004134501.1| PREDICTED: uncharacterized protein LOC101214610 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2028 bits (5254), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1081/1780 (60%), Positives = 1310/1780 (73%), Gaps = 84/1780 (4%)
Query: 1 MALRKYIPSADAPSGTMKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFL 60
MALRK++ PS +K SF K+HE Q +T++ E DV++D REVYFLIMHFL
Sbjct: 1 MALRKFV-CGSTPSINLKHSSFPIKLHEQTQFEEPETNRTLEPDVEIDPREVYFLIMHFL 59
Query: 61 STGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPH 120
S+GPC RT G W+EL EHQLLPRRYHAWYSR+G+ SG ENDDG+SFPLSY LVERYPH
Sbjct: 60 SSGPCLRTCGLLWDELFEHQLLPRRYHAWYSRNGVHSGHENDDGLSFPLSYQHLVERYPH 119
Query: 121 IEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEIDH 180
++K+HL+KLLKQLI+N + PSR M GG APNAADVPTLLG G+FSLLSYD+ +G ++
Sbjct: 120 VDKNHLIKLLKQLILNKAPPSRGMSGGIAPNAADVPTLLGTGTFSLLSYDKHEGVSKPSG 179
Query: 181 PPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVR 240
PPAHMRWPHM AD VRGL LREIGGGF+RH RAPS+RAACYAIAKPSTMVQKMQNIKR+R
Sbjct: 180 PPAHMRWPHMKADSVRGLSLREIGGGFSRHQRAPSVRAACYAIAKPSTMVQKMQNIKRLR 239
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV 300
GHRNAVYCAIFDR+GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA+V
Sbjct: 240 GHRNAVYCAIFDRAGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAVV 299
Query: 301 ASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360
AS+SND +IRVWRLPDGLPISVLRGHT AVTAIAFSPR + YQLLSSSDDGTCRIWDAR
Sbjct: 300 ASSSNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPR--AAYQLLSSSDDGTCRIWDAR 357
Query: 361 YS-QFSPRIYIPRPSDAVAG----RNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTL 415
S Q +PRIY+P+P D+V G RN S S PQSHQIFCCAFNA GT+FVTGSSDTL
Sbjct: 358 SSSQSAPRIYVPKPLDSVTGWLISRNGGSSVSTLPQSHQIFCCAFNACGTIFVTGSSDTL 417
Query: 416 ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475
ARVW+ACK N D+ DQPNHEIDVL+GHENDVNYVQFSGCAVASRF+ D +KED+ KFK
Sbjct: 418 ARVWSACKGNNDNPDQPNHEIDVLAGHENDVNYVQFSGCAVASRFTTTDVAKEDNVHKFK 477
Query: 476 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR 535
NSWF +DNIVTCSRDGSAIIW+PRSRRSH K RWT+AYHLKVPPPPMPPQP RGGPRQR
Sbjct: 478 NSWFTYDNIVTCSRDGSAIIWVPRSRRSHGKVGRWTRAYHLKVPPPPMPPQPARGGPRQR 537
Query: 536 ILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNP 595
ILPTPRGVNMI+WSLDNRFVLAAIMDCRICVWNA+DGSLVHSLTGHTESTYVLDVHPFNP
Sbjct: 538 ILPTPRGVNMIIWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNP 597
Query: 596 RIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 655
RIAMSAGYDGKTIVWDIWEG PIRIYEIS F+LVDGKFS DG SIILSDDVGQLYIL+TG
Sbjct: 598 RIAMSAGYDGKTIVWDIWEGTPIRIYEISHFKLVDGKFSSDGTSIILSDDVGQLYILSTG 657
Query: 656 QGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQ 715
QGESQ+DAKYDQFFLGDYRPL+QD GNV+DQETQL+ +RRNLQD L DS MIPYPEPYQ
Sbjct: 658 QGESQQDAKYDQFFLGDYRPLIQDPSGNVIDQETQLSTYRRNLQDLLSDSGMIPYPEPYQ 717
Query: 716 TMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEP 775
T YQQRRLGA+ +EWRPSSLKL+VGPDF+LD YQL PLADLD++++PLP+ +D MDW P
Sbjct: 718 TAYQQRRLGAMSVEWRPSSLKLSVGPDFNLDPDYQLLPLADLDMLVEPLPDIVDAMDWGP 777
Query: 776 ENEVQSDDNDSEYNVAEEYST-EEKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRKK 834
ENEVQS+D DSEYNV E+YST E+ SL+S S D ECS+ED+ + P DGLRRSKRKK
Sbjct: 778 ENEVQSEDTDSEYNVTEDYSTGGEQRSLNSNCSTDPECSSEDTGIDDAPADGLRRSKRKK 837
Query: 835 QKAEVEIMTSSGRRVKRRILDESEGNAAFGNK-RTRKSGNRQKSSRRKSSTSKSLRPQRA 893
QKA++E+MTSSGRRVKRR +DE EG+A ++ R KSG++ S SKSLRPQRA
Sbjct: 838 QKADMEVMTSSGRRVKRRNMDEYEGDAIRSSRNRKSKSGHKPSKK---KSASKSLRPQRA 894
Query: 894 AARNARSFFSKITGASTDGEDVDGSEGELSESESDLQDSYIESEESGRSLLNEQRKHSKG 953
AARNAR++ S G STDGE+ S G+ SESES L+DS IES+E RSL N + KHSKG
Sbjct: 895 AARNARNWISSFKGKSTDGEEEYESGGDCSESESTLEDSDIESDEYERSLQN-RIKHSKG 953
Query: 954 KGISLDDSEDVTK-LDTPESHVNAGIR-RLVLKLPVRDSNKHELQERTSDKCNQLVSVIG 1011
K + L +E++TK LD PES V+AG R +L++K V++ NK + T+ C+ V
Sbjct: 954 KEVFLYGAEEITKSLDVPESRVDAGNRKKLIVKFSVKNLNKGDPPLSTALSCSNTADVAS 1013
Query: 1012 TSSEAHQEATEGNGNRVSYVGNNCSSVDANCGLMERRGRGQFDKLEDYLNLSNGYKDGKI 1071
+SS + +E E + N V R QF ++ +L+ Y +G I
Sbjct: 1014 SSSRSPKEVIETSQNLV-------------------RSERQFVNIDGNSDLTEVYTNGNI 1054
Query: 1072 RWGGVRARSSKRLKIGEMMPLDANN-GSGIHLDDDKEKESEVNGHVKPEKDGIDISCGEE 1130
RWGG R RSSKR++ G+ MP DA S + D E E+ V+ +++ E S +
Sbjct: 1055 RWGGSRVRSSKRIRFGDTMPSDAYAVSSSLPNGDHNENENAVHEYLERENHFGAPSPHAK 1114
Query: 1131 ITN-CGDNTDEVPLKNVK----NLSGENND-VYSGDASCKEQQSGFSELNYYDESKCVNT 1184
+ N C D D V +K N SG + + V G+ C G S+ +D+S +
Sbjct: 1115 VVNFCSDEMDTVSPTKLKEEDDNASGHSQEMVNGGELKC----VGNSKSCDHDDSNNLIM 1170
Query: 1185 TDEDTTPYPNHLQNGTIQPSELKEILTPVSTKLRIRS---------KRILRDADVENQNN 1235
D T +QNGT P E E P+ K+R +S K + D ++N+
Sbjct: 1171 FSSDAT--TTSIQNGTHAP-EQTENTAPMRKKIRFKSISLDPEHSLKHKIESLDESSKND 1227
Query: 1236 GCDALHGSSLDIKPNSLPEVLESDGTNRTSSDRGADGSQRLNAQIDSTSEHDPLGSHSHS 1295
+ + GS PN L + + TN T SD + + ++ +D P+ + +S
Sbjct: 1228 EYNTVSGSPQ--HPNGLKDSV----TNETYSDLRNNCPEDMDIAVD----EKPVSTLCNS 1277
Query: 1296 HDPLGSHSHSHSRKMFNVVYRRSKTNRDRTNSEGDGGGVGESTL-NANNNNFHESATDGS 1354
+ ++ KM+ VY RSK+N+ ++N + +G GE L N++ +S
Sbjct: 1278 SELQAVETN----KMYTAVYTRSKSNKGKSNIDSNGCASGEHALGNSSLPADADSHKIML 1333
Query: 1355 RRTRSMGLKTTTCDPDNVSSNLRLEQHNQPEDM--YSGHNRSTSRCQLPHEEWGSSSKMT 1412
R+ RS+ K ++ D +NV +L+ ++ + E SG N S R +P EEWGSSS+MT
Sbjct: 1334 RKARSIRFKESSYDLNNVGDDLKSDEDQELEQKSRRSG-NSSADRSHIPSEEWGSSSRMT 1392
Query: 1413 VGLRSTRNRRTSYLFCDSSPIDRRKTHQSLRKGSWLMLSTHEEGSRYIPQLGDEVVYLRQ 1472
VG RSTRNRR + L D +P+DRRK+ Q RKGSWLM+ HE GSRYIPQLGDEV YLRQ
Sbjct: 1393 VGSRSTRNRRGT-LIQDINPVDRRKSVQYARKGSWLMMPAHEGGSRYIPQLGDEVAYLRQ 1451
Query: 1473 GHQEYI-----NYSGSREVGPWITVKGNIRAVEFCKVESLEYATASGSGDSCCKMTLKFI 1527
GHQEYI NY +++GPW + +G IRAVEFCKV L Y+T++GSGDSCCKM LKFI
Sbjct: 1452 GHQEYIQHCCANYCHIKDMGPWTSNRGTIRAVEFCKVVELVYSTSAGSGDSCCKMLLKFI 1511
Query: 1528 DPTSSVSNMTFRLTLPEVTGFPDFLVERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWW 1587
DP+S V +F+LTLPE+T FPDFLVE++RF+AA+QRNWT RDKCKVWWKN+ DGSWW
Sbjct: 1512 DPSSQVYLQSFKLTLPELTSFPDFLVEKSRFEAAMQRNWTFRDKCKVWWKNDVGVDGSWW 1571
Query: 1588 DGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFDSDTQWEQPRIDDDNRNK 1647
DGR++SV+ KSSEFP+SPWERYT++Y+++P E HLHSPWEL+D+ QWEQPRIDD+ ++K
Sbjct: 1572 DGRIISVQAKSSEFPESPWERYTIRYRSDPAEPHLHSPWELYDTIIQWEQPRIDDETKSK 1631
Query: 1648 LLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEA 1707
LL A KL + +Q ++G+Q L +S+KT + NRFPVPL L++IQ RL+N+YYR LEA
Sbjct: 1632 LLMAIDKLMSPS--MQGRFGIQDLMILSRKTQYKNRFPVPLCLEIIQERLQNDYYRSLEA 1689
Query: 1708 VKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1747
+KHD VMLSN ES+ +N D+S KI+RLSD R +S L
Sbjct: 1690 LKHDFMVMLSNFESFVAKNEDMSKKIRRLSDWFDRNISPL 1729
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42568419|ref|NP_199754.2| WD40/YVTN repeat and Bromo-WDR9-I-like domain-containing protein [Arabidopsis thaliana] gi|332008427|gb|AED95810.1| WD40/YVTN repeat and Bromo-WDR9-I-like domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1872 bits (4848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1053/1777 (59%), Positives = 1271/1777 (71%), Gaps = 132/1777 (7%)
Query: 1 MALRKYIPSADAPSGTMKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFL 60
MALRK P D+ S MKPL+FS K+ N Q+ D Q ++D+DLREVYFL++H L
Sbjct: 1 MALRKNTPKGDSVSLPMKPLNFSRKLPGNVQIPDPDIVQSVAPNIDLDLREVYFLMLHLL 60
Query: 61 STGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPH 120
S+GPC +TY +ELLEH+LLPRRYHAWYSRSGLPSGDENDDG SFPL+Y +L +RY H
Sbjct: 61 SSGPCQKTYALLRHELLEHELLPRRYHAWYSRSGLPSGDENDDGNSFPLNYTELAKRYSH 120
Query: 121 IEKDHLVKLLKQLII--NTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEI 178
++KDHLV+LLKQL+ N +PSR + G+ A VPTLLG GSFSLLS D++ +++
Sbjct: 121 VKKDHLVELLKQLVFVSNRPNPSRGIGDGNKMIGAGVPTLLGTGSFSLLSSDKEIVGSDL 180
Query: 179 DHPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKR 238
PP MRWPHM+ADQVRG+ LREIGGGF RHHRAPSIRAACY IAKPS+MVQKMQNIKR
Sbjct: 181 KPPPIGMRWPHMHADQVRGISLREIGGGFARHHRAPSIRAACYVIAKPSSMVQKMQNIKR 240
Query: 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA 298
+RGHRNAVYCAI DRSGRYVITGSDDRLVK+WSM+TAYCLASCRGHEGDITDLAVSSNN
Sbjct: 241 LRGHRNAVYCAILDRSGRYVITGSDDRLVKVWSMDTAYCLASCRGHEGDITDLAVSSNNI 300
Query: 299 LVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358
+ASASNDC+IRVWRLPDGLP+SVLRGHT AVTAIAFSPRPGS YQLLSSSDDGTCRIWD
Sbjct: 301 FIASASNDCVIRVWRLPDGLPVSVLRGHTGAVTAIAFSPRPGSPYQLLSSSDDGTCRIWD 360
Query: 359 ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARV 418
AR +QF+PRIY+PRP + G+N PSSS QSHQIFCCAFNA+G+VFVTGSSDTLARV
Sbjct: 361 ARGAQFAPRIYVPRPP-SPDGKNSGPSSSNAQQSHQIFCCAFNASGSVFVTGSSDTLARV 419
Query: 419 ---WNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475
W+A K NTDD +QPNHE+DVL+GHENDVNYVQFSGCA S+FS+ D SK+++ PKFK
Sbjct: 420 YSVWSANKTNTDDPEQPNHEMDVLAGHENDVNYVQFSGCAAGSKFSVTDYSKDENVPKFK 479
Query: 476 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR 535
NSWFCHDNIVTCSRDGSAIIWIPR RRSH K+ RWT+AYHLKVPPPPMPPQPPRGGPRQR
Sbjct: 480 NSWFCHDNIVTCSRDGSAIIWIPRLRRSHGKSCRWTRAYHLKVPPPPMPPQPPRGGPRQR 539
Query: 536 ILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNP 595
ILPTPRGVNMI WSLDNRFVLAAIMDCRICVWNA+DGSLVHSLTGHT STYV+DVHPFNP
Sbjct: 540 ILPTPRGVNMIAWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTASTYVMDVHPFNP 599
Query: 596 RIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 655
RIAMSAGYDGKTIVWDIWEGIPI+IY+IS ++LVDGKFSPDG SIILSDDVGQLYIL+TG
Sbjct: 600 RIAMSAGYDGKTIVWDIWEGIPIQIYDISHYKLVDGKFSPDGTSIILSDDVGQLYILSTG 659
Query: 656 QGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQ 715
QG+SQKDAKYDQFFLGDYRPL+QDTYGNVLDQE+QL P+RRN++DPLCDS MIPY EPYQ
Sbjct: 660 QGDSQKDAKYDQFFLGDYRPLIQDTYGNVLDQESQLQPYRRNMEDPLCDSGMIPYEEPYQ 719
Query: 716 TMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEP 775
T +Q+RRLGALG EWRPSSLKLAVGPD +LD+ YQ+ PLADLD + +PLPEFIDVM+WEP
Sbjct: 720 TTFQKRRLGALGKEWRPSSLKLAVGPDITLDRDYQMPPLADLD-LAEPLPEFIDVMEWEP 778
Query: 776 ENEVQSDDNDSEYNVAEEYST-EEKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRKK 834
E ++ SD+NDSEYNV EEYS+ +E+ L+S++SG+S S+ +S + ++ + LRRSKRKK
Sbjct: 779 EVDILSDENDSEYNVPEEYSSGKEQECLNSSTSGESGSSSGESYEDDDHQNSLRRSKRKK 838
Query: 835 QKAEVEIMTSSGRRVKRRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRPQRAA 894
K E IMTSSGRRVK+R DE EG A KRTRKS + +K S+RKSS SKS RP+RAA
Sbjct: 839 HKKEAGIMTSSGRRVKKRNFDELEG-APSNKKRTRKSRSGRKESKRKSSKSKSSRPRRAA 897
Query: 895 ARNARSFFSKITGASTDGEDVDGSEGELSESESD-LQDSYIESEESGRSLLNEQRKHSKG 953
ARNA S+FSKITG S D E+ + SE S QDS E +LLN K SKG
Sbjct: 898 ARNALSWFSKITGTSKDAEEEEVSELSDSSESESTTQDSGTGDSELEVALLNGHGKQSKG 957
Query: 954 KGISLDDSED-VTKLDTPESHVNAGIRRLVLKLPVRDSNKHELQERTSDKCNQLVSVIGT 1012
K I + DS+D + D E+H A RRLVL+ PVR+S+K L E ++ G+
Sbjct: 958 KTILVCDSDDGAQQCDIRETHT-AERRRLVLRFPVRNSDKLTLLE----------NLPGS 1006
Query: 1013 SSEAHQEATEGNGNRVSYVGNNCSSVDANCGLMERRGRGQFDKLEDYLNLSNGYKDGKIR 1072
S + T GNG C R QF+ G K++
Sbjct: 1007 SCDV-PSPTLGNG----------------CTEDSRIPGNQFE----------GLDVSKVK 1039
Query: 1073 WGGVRARSSKRLKIGEMMPLDANNGSGIHLDDDKEKESEVNGHVKPEKDGIDI-SCGEEI 1131
WG V+AR++KR++ GE + GS D + KE+ V +G+ SC E
Sbjct: 1040 WGMVKARTTKRIR-GEAISSHELMGS-----DPEGKENNVKEDSNHRGNGVTAPSCLELK 1093
Query: 1132 TNCGD---NTDEVPLKNVKNLSGENNDVYSGDASCKEQQSGFSELNYYDESKCVNTTDED 1188
T+ D +TD V + N G+ G S D+
Sbjct: 1094 TDIDDMAVDTDTVISNGLPN-GGKRYPELDGSPS--------------------RVADDK 1132
Query: 1189 TTPYPNHLQNGTIQPSELKEILTPVSTKLRIRSKRILRDAD-----------VENQNNGC 1237
+ N QN T + +L + L P+ST L+IRSKR+ R D ++ + G
Sbjct: 1133 AS---NSSQNVTHR-HDLIDSLPPISTTLKIRSKRVSRAPDTSLRQEGKSLSIDQETGGS 1188
Query: 1238 DALHGSSLDIKPNSLPEVLESDGTNRTSSDRGADGSQRLNAQI-DSTSEHDPLGSHSHSH 1296
DAL+ D K + L + DG T D LN QI D+ S + +
Sbjct: 1189 DALNDGFEDAKCD-LTLDCQKDGVVGTEISLRNDCVLELNPQICDALSIANDV------- 1240
Query: 1297 DPLGSHSHSHSRKMFNVVYRRSKTNRDRTNSEGDGGGVGE------STLNANNNNFHESA 1350
P+ SHSH ++MF+ VYRR K+ + + N + D E S + + + HE A
Sbjct: 1241 -PV---SHSHPKRMFDFVYRR-KSRKHKNNLDRDAALTKEVSPGSCSQDHGSGSKSHEGA 1295
Query: 1351 TDGSRRTRSMGLKTTTCDPDNVSSNLRLEQHNQPEDMYSGHNRSTSRCQLPHEEWGSSSK 1410
++G T GL+ + ++ + + NQ EE S+S
Sbjct: 1296 SNGFHGTELNGLEKSEGSLTHIQDKISDSRGNQNS----------------QEELRSASG 1339
Query: 1411 MTVGLRSTRNRRTSYLFCDSSPIDRRKTHQSLRKGSWLMLSTHEEGSRYIPQLGDEVVYL 1470
T+ LRSTRNR+++Y F ++ PI+ +K Q + SWL LS HEEGSRYIPQ+GDEV YL
Sbjct: 1340 ATLRLRSTRNRKSTYPFSETKPIETKKPQQLIENVSWLTLSIHEEGSRYIPQMGDEVAYL 1399
Query: 1471 RQGHQEYINYSGSREVGPWITVK-GNIRAVEFCKVESLEYATASGSGDSCCKMTLKFIDP 1529
RQGHQEY+N+S REV PW ++K GNI+AVE CKVESLEYAT GSGDSCCKM LK IDP
Sbjct: 1400 RQGHQEYLNFSSLREVAPWTSIKGGNIKAVEICKVESLEYATLPGSGDSCCKMILKVIDP 1459
Query: 1530 TSSVSNMTFRLTLPEVTGFPDFLVERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWWDG 1589
S V N F+LTLPEV FPDFLVER+R++AAIQRNWTCRDKCKVWW++E +EDGSWW+G
Sbjct: 1460 NSEVFNKAFKLTLPEVVTFPDFLVERSRYEAAIQRNWTCRDKCKVWWRDEGEEDGSWWEG 1519
Query: 1590 RVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFDSDTQWEQPRIDDDNRNKLL 1649
R+L+VKPKS +FPDSPWERYTV+YK++P ETHLHSPWELFD+DT+WEQP IDD+ RN+LL
Sbjct: 1520 RILAVKPKSPDFPDSPWERYTVKYKSDPAETHLHSPWELFDADTKWEQPHIDDEQRNRLL 1579
Query: 1650 SAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVK 1709
SA KLE S R QD +G++KL Q ++++NRFPVPLSL+VI+SRLENNYYR +EA++
Sbjct: 1580 SALTKLETSDKRTQDSFGLRKLNQTVGNSSYSNRFPVPLSLEVIRSRLENNYYRSVEALR 1639
Query: 1710 HDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSS 1746
HD++VMLSNAE++FGRN ++ KI LS+ RTL S
Sbjct: 1640 HDVSVMLSNAETFFGRNKSVAAKISNLSNWFDRTLPS 1676
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297795697|ref|XP_002865733.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297311568|gb|EFH41992.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1859 bits (4816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1047/1763 (59%), Positives = 1254/1763 (71%), Gaps = 135/1763 (7%)
Query: 17 MKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFLSTGPCHRTYGQFWNEL 76
MKPL+FS K+ N Q+ D +Q ++D+DLREVYFLI+H LS+GPC +TY +EL
Sbjct: 1 MKPLNFSRKLPGNVQIPDPDIAQVVAPNIDLDLREVYFLILHLLSSGPCQKTYALLRHEL 60
Query: 77 LEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPHIEKDHLVKLLKQLII- 135
LEH+LLPRRYHAWYSRSGL SGDENDDG SFPL+Y +L +RY H++KDHLV+LLKQL+
Sbjct: 61 LEHELLPRRYHAWYSRSGLSSGDENDDGNSFPLNYTELAKRYSHVKKDHLVELLKQLVFV 120
Query: 136 -NTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEIDHPPAHMRWPHMYADQ 194
N +PSR + G+ A VPTLLG GSFSLLS D++ +++ PP MRWPHM+ADQ
Sbjct: 121 SNRPNPSRGIGDGNKMIGAGVPTLLGTGSFSLLSSDKEIVGSDLKAPPIGMRWPHMHADQ 180
Query: 195 VRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRS 254
VRG+ LREIGGGF RHHRAPSIRAACY IAKPS+MVQKMQNIKR+RGHRNAVYCAI DRS
Sbjct: 181 VRGISLREIGGGFGRHHRAPSIRAACYVIAKPSSMVQKMQNIKRLRGHRNAVYCAILDRS 240
Query: 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 314
GRYVITGSDDRLVK+WSM+TAYCLASCRGHEGDITDLAVSSNN +ASASNDC+IRVWRL
Sbjct: 241 GRYVITGSDDRLVKVWSMDTAYCLASCRGHEGDITDLAVSSNNIFIASASNDCVIRVWRL 300
Query: 315 PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPS 374
PDGLP+SVLRGHT AVTAIAFSPRPGS YQLLSSSDDGTCRIWDAR +QF+PRIY+PRP
Sbjct: 301 PDGLPVSVLRGHTGAVTAIAFSPRPGSPYQLLSSSDDGTCRIWDARGAQFAPRIYVPRPP 360
Query: 375 DAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARV---WNACKPNTDDSDQ 431
+ G+N PSSS QSHQIFCCAFNANG+VFVTGSSDTLARV W+A K NTDD +Q
Sbjct: 361 -SPDGKNSGPSSSNAQQSHQIFCCAFNANGSVFVTGSSDTLARVYSVWSANKTNTDDPEQ 419
Query: 432 PNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG 491
PNHE+DVL+GHENDVNYVQFSGCA S+FS+ D SK+++ PKFKNSWFCHDNIVTCSRDG
Sbjct: 420 PNHEMDVLAGHENDVNYVQFSGCAAGSKFSVTDYSKDENVPKFKNSWFCHDNIVTCSRDG 479
Query: 492 SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD 551
SAIIWIPRSRRSH K+ RWT+AYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMI WSLD
Sbjct: 480 SAIIWIPRSRRSHGKSCRWTRAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIAWSLD 539
Query: 552 NRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611
NRFVLAAIMDCRICVWNA+DGSLVHSLTGHT STYV+DVHPFNPRIAMSAGYDGKTIVWD
Sbjct: 540 NRFVLAAIMDCRICVWNASDGSLVHSLTGHTASTYVMDVHPFNPRIAMSAGYDGKTIVWD 599
Query: 612 IWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLG 671
IWEGIPI+IYEIS ++LVDGKFSPDG SIILSDDVGQLYIL+TGQG+SQKDAKYDQFFLG
Sbjct: 600 IWEGIPIQIYEISHYKLVDGKFSPDGTSIILSDDVGQLYILSTGQGDSQKDAKYDQFFLG 659
Query: 672 DYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWR 731
DYRPL+QD YGNVLDQE+QL P+RRN++DPLCDS MIPY EPYQT +Q+RRLGALG EWR
Sbjct: 660 DYRPLIQDIYGNVLDQESQLQPYRRNMEDPLCDSGMIPYEEPYQTTFQKRRLGALGKEWR 719
Query: 732 PSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEPENEVQSDDNDSEYNVA 791
PSSLKLAVGPD +LDQ YQ+ PLADLD + +PLPEFIDVM+WEPE ++ SD+NDSEYNV
Sbjct: 720 PSSLKLAVGPDITLDQDYQMPPLADLD-LAEPLPEFIDVMEWEPEVDILSDENDSEYNVP 778
Query: 792 EEYST-EEKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRKKQKAEVEIMTSSGRRVK 850
EEYS+ +E+ L+S++SG+S S+ +S++ ++ + LRRSKRKK K E IMTSSGRRVK
Sbjct: 779 EEYSSGKEQECLNSSTSGESGSSSGESDEDDDHQNSLRRSKRKKDKKEAGIMTSSGRRVK 838
Query: 851 RRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRPQRAAARNARSFFSKITGAST 910
+R DE EG A KRTRKS + +K S+RKSS SKS RP+RAAARNA S+FSKITG S
Sbjct: 839 KRNFDELEG-APSNKKRTRKSRSGRKESKRKSSKSKSSRPRRAAARNALSWFSKITGTSK 897
Query: 911 DGEDVDGSEGELSESESD-LQDSYIESEESGRSLLNEQRKHSKGKGISLDDSED-VTKLD 968
D E+ + SE S QDS E +LLN K SKGK I + DS+D + D
Sbjct: 898 DAEEEEVSELSDSSESESTTQDSGTGDSELEVALLNGHGKQSKGKNILVCDSDDGAQQCD 957
Query: 969 TPESHVNAGIRRLVLKLPVRDSNKHELQERTSDKCNQLVSVIGTSSEAHQEATEGNGNRV 1028
E+H RRLVL+ PVR+S+K L E ++ G+SS+ T GNG
Sbjct: 958 IRETHPTER-RRLVLRFPVRNSDKLTLLE----------NLPGSSSDV-PTPTLGNG--- 1002
Query: 1029 SYVGNNCSSVDANCGLMERRGRGQFDKLEDYLNLSNGYKDGKIRWGGVRARSSKRLKIGE 1088
C R QF+ G K++WG V+AR++KR++ GE
Sbjct: 1003 -------------CAEDSRIPGNQFE----------GLDVSKVKWGMVKARTTKRIR-GE 1038
Query: 1089 MMPLDANNGSGIHLDDDKEKESEVNGHVKPEKDGIDI-SCGE---EITNCGDNTDEVPLK 1144
+ GS D + KE+ + +G+ SC E +I +TD V
Sbjct: 1039 AISSHELMGS-----DPEGKENNLKEDANHHGNGVTAPSCLELKTDIDGMAVDTDTVISS 1093
Query: 1145 NVKNLSGENNDVYSGDASCKEQQSGFSELNYYDESKCVNTTDEDTTPYPNHLQNGTIQPS 1204
+ N G E S L D+ + N Q+ T
Sbjct: 1094 GLPN----------GGKRYPELDGSPSRL-----------ADDRAS---NGSQDVTGHRH 1129
Query: 1205 ELKEILTPVSTKLRIRSKRILRDAD-----------VENQNNGCDALHGSSLDIKPNSLP 1253
L + L P+ST LRIRSKR+ R D ++ + G DAL+ D K + L
Sbjct: 1130 NLIDSLPPISTTLRIRSKRVSRAPDTSLRQEGKPLSIDQETGGSDALNDGFEDAKCD-LA 1188
Query: 1254 EVLESDGTNRTSSDRGADGSQRLNAQID---STSEHDPLGSHSHSHDPLGSHSHSHSRKM 1310
+ DG T D LN QI S + P+ SHSH ++M
Sbjct: 1189 LDCQKDGVVGTEISLRNDCVLELNPQISDALSIANDVPV-------------SHSHPKRM 1235
Query: 1311 FNVVYRRSKTNRDRTNSEGDGGGVGE------STLNANNNNFHESATDGSRRTRSMGLKT 1364
F+ VYRR K+ + N + D E S + + HE A++G T+ GL+
Sbjct: 1236 FDFVYRR-KSRKYNNNLDRDAAITKEISPGSCSQDQGSGSKSHEGASNGFHGTQLNGLEK 1294
Query: 1365 TTCDPDNVSSNLRLEQHNQPEDMYSGHNRSTSRCQLPHEEWGSSSKMTVGLRSTRNRRTS 1424
+ ++ + + NQ EE S+S T+ LRSTRNR+++
Sbjct: 1295 SEGSLTHIQDKISDSRGNQNS----------------QEELRSASGATLRLRSTRNRKST 1338
Query: 1425 YLFCDSSPIDRRKTHQSLRKGSWLMLSTHEEGSRYIPQLGDEVVYLRQGHQEYINYSGSR 1484
Y F ++ PI+ +K Q + SWL LS HEEGSRYIPQ+GDEV YLRQGHQEY+N+S R
Sbjct: 1339 YPFSETKPIETKKPQQLIENVSWLTLSIHEEGSRYIPQMGDEVAYLRQGHQEYLNFSSLR 1398
Query: 1485 EVGPWITVK-GNIRAVEFCKVESLEYATASGSGDSCCKMTLKFIDPTSSVSNMTFRLTLP 1543
EV PW ++K GNI+AVE CKVESLEYAT GSGDSCCKM LK IDP S V N F+LTLP
Sbjct: 1399 EVAPWTSIKGGNIKAVEICKVESLEYATLPGSGDSCCKMILKVIDPNSEVFNKAFKLTLP 1458
Query: 1544 EVTGFPDFLVERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPD 1603
EV FPDFLVER+R++AAIQRNWTCRDKCKVWW++E +EDGSWW+GR+L+VKPKS +FPD
Sbjct: 1459 EVVTFPDFLVERSRYEAAIQRNWTCRDKCKVWWRDEGEEDGSWWEGRILAVKPKSPDFPD 1518
Query: 1604 SPWERYTVQYKTEPTETHLHSPWELFDSDTQWEQPRIDDDNRNKLLSAFAKLEQSANRVQ 1663
SPWERYTV+YK++P ETHLHSPWELFD+DT+WE P IDD+ RN+LLSA KLE S R Q
Sbjct: 1519 SPWERYTVKYKSDPAETHLHSPWELFDADTKWEPPHIDDEQRNRLLSALTKLETSDKRTQ 1578
Query: 1664 DQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYF 1723
D YG++KL Q +++TNRFPVPLSL+VI+SRLENNYYR +EA++HD+AVMLSNAE++F
Sbjct: 1579 DSYGLRKLNQTVGNSSYTNRFPVPLSLEVIRSRLENNYYRSVEALRHDVAVMLSNAETFF 1638
Query: 1724 GRNTDLSTKIKRLSDLVTRTLSS 1746
GRN ++ KI LS+ R L S
Sbjct: 1639 GRNKSVAAKISNLSNWFDRMLPS 1661
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296083262|emb|CBI22898.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1741 bits (4510), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 923/1260 (73%), Positives = 1015/1260 (80%), Gaps = 82/1260 (6%)
Query: 1 MALRKYIPSADAPSGTMKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFL 60
MAL+KYIPS DAPS +MKPLSFSSKV E QLA + S + DVD+DLREVYFLIMHFL
Sbjct: 1 MALQKYIPSGDAPSVSMKPLSFSSKVQEKVQLADPEGSPTMDADVDIDLREVYFLIMHFL 60
Query: 61 STGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPH 120
S GPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGL SGDENDDG SFPLSYNKLVERYPH
Sbjct: 61 SAGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLRSGDENDDGSSFPLSYNKLVERYPH 120
Query: 121 IEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEIDH 180
I KDHLVKLLKQLI++T+ PS+ MI G+ PNAADVPTLLG GSFSLL D DKG NE++
Sbjct: 121 IGKDHLVKLLKQLILSTTHPSQGMIRGNVPNAADVPTLLGTGSFSLLGNDMDKGHNEVNP 180
Query: 181 PPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVR 240
PP HMRWPHM ADQVRGL LREIGGGFTRH+RAPSIRAACYA+AKPSTMVQKMQNIK++R
Sbjct: 181 PPIHMRWPHMQADQVRGLSLREIGGGFTRHNRAPSIRAACYAVAKPSTMVQKMQNIKKLR 240
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV 300
GHRNAVYCAIFDR+GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV
Sbjct: 241 GHRNAVYCAIFDRTGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV 300
Query: 301 ASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360
AS+SNDCIIRVWRLPDGLPISVLRGHT AVTAIAFSPRP SVYQLLSSSDDGTCRIWDAR
Sbjct: 301 ASSSNDCIIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSSVYQLLSSSDDGTCRIWDAR 360
Query: 361 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
YSQFSPRIY+PRP D++AG+N PSSS GPQSHQIFCCAFNANGTVFVTGSSDTLARVWN
Sbjct: 361 YSQFSPRIYVPRPPDSIAGKNNVPSSSNGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
Query: 421 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFC 480
ACK N D+SDQPNHE+D+LSGHENDVNYVQFSGCAV+SRFS+A+SSKE++ PKFKNSWF
Sbjct: 421 ACKSNPDESDQPNHEMDILSGHENDVNYVQFSGCAVSSRFSVAESSKEENVPKFKNSWFT 480
Query: 481 HDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP 540
HDNIVTCSRDGSAIIWIPRSRRSH K RWT+AYHLKVPPPPMPPQPPRGGPRQRILPTP
Sbjct: 481 HDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPMPPQPPRGGPRQRILPTP 540
Query: 541 RGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMS 600
RGVNMIVWSLDNRFVLAAIMDCRICVWNA DGSLVHSLTGHTESTYVLDVHPFNPRIAMS
Sbjct: 541 RGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHTESTYVLDVHPFNPRIAMS 600
Query: 601 AGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQ 660
AGYDGKTIVWDIWEG PIRIY+ +RF+LVDGKFSPDG SIILSDDVGQLYIL+TGQGESQ
Sbjct: 601 AGYDGKTIVWDIWEGTPIRIYDTARFKLVDGKFSPDGTSIILSDDVGQLYILSTGQGESQ 660
Query: 661 KDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQ 720
KDA YDQFFLGDYRPL+QDTYGNVLDQETQLAP+RRN+QD LCD+ MIPYPEPYQ+MYQQ
Sbjct: 661 KDAMYDQFFLGDYRPLIQDTYGNVLDQETQLAPYRRNMQDLLCDATMIPYPEPYQSMYQQ 720
Query: 721 RRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEPENEVQ 780
RRLGALGIEWRPSSL+LAVGPDF+LDQ YQ+ PL DLDV+IDPLPEFIDVMDWEPENEVQ
Sbjct: 721 RRLGALGIEWRPSSLRLAVGPDFNLDQDYQMLPLPDLDVLIDPLPEFIDVMDWEPENEVQ 780
Query: 781 SDDNDSEYNVAEEYST-EEKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRKKQKAEV 839
+DD DSEYNV EEYST E+GSLSS SSGD ECSAEDS+ + DGLRRSKRKKQKAE
Sbjct: 781 TDDTDSEYNVTEEYSTGGEQGSLSSNSSGDPECSAEDSDVENSHKDGLRRSKRKKQKAET 840
Query: 840 EIMTSSGRRVKRRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRPQRAAARNAR 899
EIMT SGRRVKRR LDE +GN+ N RTRKS + +K S + SS SKSLRPQRAAARNA
Sbjct: 841 EIMTFSGRRVKRRNLDEFDGNSLRSN-RTRKSRSGRKVSHKNSSKSKSLRPQRAAARNAL 899
Query: 900 SFFSKITGASTDGEDVDGSEGELSESESDLQDSYIESEESGRSLLNEQRKHSKGKGISLD 959
+ FS++ G STDGED DGSEG+LSESES L+DS IES+ES SL NEQ KHSKGK +SLD
Sbjct: 900 TLFSRMKGTSTDGEDEDGSEGDLSESESSLEDSNIESDESDGSLQNEQCKHSKGKEVSLD 959
Query: 960 DSEDVTKL-DTPESHVNAG-IRRLVLKLPVRDSNKHELQERTSDKCNQLVSVIGTSSEAH 1017
+ ED+ K + PES +NAG RRLVLK P+RDSN+ L NQ ++G+SS+A
Sbjct: 960 EFEDMDKQHEHPESCMNAGNRRRLVLKFPIRDSNRLLLAPE-----NQ-ADLVGSSSKAP 1013
Query: 1018 QEATEGNGNRVSYVGNNCSSVDANCGLMERRGRGQFDKLEDYLNLSNGYKDGKIRWGGVR 1077
QEA+E RGQ +K+ED+L+L GYKDGKIRWGGV+
Sbjct: 1014 QEASE---------------------------RGQPEKIEDHLDLFEGYKDGKIRWGGVK 1046
Query: 1078 ARSSKRLKIGEMMPLDANNGSGIHLDDDKEKESEVNGHVKPEKDGIDISCGEEITNCGDN 1137
AR+SKRL++ E MP D + S +D E+ +NG +PEK+ IS EI
Sbjct: 1047 ARTSKRLRVVEPMPSDTDARSRQCIDGHDATENTINGFQEPEKNYDRISPHSEI------ 1100
Query: 1138 TDEVPLKNVKNLSGENNDVYSGDASCKEQQSGFSELNYYDE-SKCVNTTDEDTTPYPNHL 1196
K S F+E YDE K VN DT
Sbjct: 1101 --------------------------KYHHSSFNECMNYDEPPKQVNMVAGDTAASSVQH 1134
Query: 1197 QNGTIQPSELKEILTPVSTKLRIRSKRILRDAD----------VENQNNGCDALHGSSLD 1246
NGT P LKE T STKLRIRSK+IL D + VE+ +NG D H ++ D
Sbjct: 1135 SNGTDHPPHLKESSTS-STKLRIRSKKILEDPEIPSDPKIKSSVEDWSNGMD-FHEATTD 1192
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357449001|ref|XP_003594776.1| Bromodomain and WD repeat-containing protein [Medicago truncatula] gi|355483824|gb|AES65027.1| Bromodomain and WD repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1706 bits (4417), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 979/1860 (52%), Positives = 1235/1860 (66%), Gaps = 159/1860 (8%)
Query: 1 MALRKYIPSADAPSGTMKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFL 60
MAL+KY+PS DAP+ ++K LS SSK E Q ++ Q ++DVDVD+ EVYFLIM FL
Sbjct: 31 MALQKYVPSGDAPTVSLKHLS-SSKAPEKTQPDVAN--QNHDMDVDVDIGEVYFLIMRFL 87
Query: 61 STGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLS-YNKLVERYP 119
S GPCH+T WNELLE+QLLPRRYHAWYSRSG SG +DDG SFPL YNKL ERYP
Sbjct: 88 SAGPCHKTCSHLWNELLENQLLPRRYHAWYSRSGASSGVPHDDGQSFPLEDYNKLAERYP 147
Query: 120 HIEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEID 179
HIEKDHLVKLLKQL++N +S S M G+ PNAADVPTLLGRGSFSLLSYD DK E+
Sbjct: 148 HIEKDHLVKLLKQLLLNKASLSPGMSTGNPPNAADVPTLLGRGSFSLLSYDGDKVNEEVK 207
Query: 180 HPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRV 239
PP +MRWPH A+QV GL LREIGGG RHHRAPSIRAACYAIAKPSTMVQKMQNIKR+
Sbjct: 208 PPPPYMRWPHTKANQVHGLHLREIGGGLPRHHRAPSIRAACYAIAKPSTMVQKMQNIKRI 267
Query: 240 RGHRNAVYCAIFDRSGRYVITGS------------------------------------- 262
RGH NAVYCAIFDRSGRYVITGS
Sbjct: 268 RGHCNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYSLASCRGHVGDITDLAVSSNNAL 327
Query: 263 -----DDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG 317
+D ++++W + ++ RGH G +T A+ S + + ++ D
Sbjct: 328 VASSSNDYIIRVWRLPDGLPISVLRGHTGAVT--------AIAFSPRPNAVYQLLSSSDD 379
Query: 318 LPISVLRGHTAAVTAIAFSPRP--------GSVYQLLSSSDDGTCRIWDARYSQFSPRIY 369
+ T + P+P G + S C ++A + ++
Sbjct: 380 GTCRIWDARYTHSTPRLYVPKPSDSTGRSSGPSSNTMPQSHQIFCCAFNANGT-----VF 434
Query: 370 IPRPSDAVA-GRNMAPSSSAGPQSHQIFCCAFNANGTVF---------VTGSSDT----- 414
+ SD +A R+ + + ++F + +A V + S D+
Sbjct: 435 VTGSSDNLARWRSRVAGACYLKNADELFKVSASAACMVAQITARLGYDIMQSQDSRPPLD 494
Query: 415 -------LAR--VWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 465
LA VWNACK + +D +QPNHEIDVLSGHENDVNYVQFSGC VASRFS ++
Sbjct: 495 ELSFQFDLAPYPVWNACKLSMEDVEQPNHEIDVLSGHENDVNYVQFSGCTVASRFSTTET 554
Query: 466 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHP-------------------- 505
KED+ PKFKNSW HDNIVTCSRDGSAIIWIP+SRRSH
Sbjct: 555 WKEDNIPKFKNSWLNHDNIVTCSRDGSAIIWIPKSRRSHVSLSNIFSFYRCFQLHSPPPL 614
Query: 506 ------KAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI 559
K+ RWT+AYHL+VPPPPMPPQP RGGPRQRILPTPRGVNMI WSLDNRFVLAAI
Sbjct: 615 KKGRVGKSGRWTRAYHLRVPPPPMPPQPQRGGPRQRILPTPRGVNMIAWSLDNRFVLAAI 674
Query: 560 MDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIR 619
MDCRICVWNA+DGSLVHSLTGHTESTYVLDVHPFNPRI MSAGYDG+TIVWDIWEG+PIR
Sbjct: 675 MDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNPRIVMSAGYDGRTIVWDIWEGVPIR 734
Query: 620 IYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQD 679
I+EISRF++VDGKFSPDG SIILSDD GQLYILNTGQGESQKDAKYDQFFLGDYRPL+QD
Sbjct: 735 IFEISRFKMVDGKFSPDGTSIILSDDAGQLYILNTGQGESQKDAKYDQFFLGDYRPLIQD 794
Query: 680 TYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAV 739
T+GNVLDQETQ+ P+RRNLQD LCDSAMIPYPEPYQ+ +Q+RRLGALG +WRPS LKLA+
Sbjct: 795 THGNVLDQETQITPYRRNLQDLLCDSAMIPYPEPYQSEFQRRRLGALGHDWRPSPLKLAI 854
Query: 740 GPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEPENEVQSDDNDSEYNVAEEYSTE-E 798
G DFSLD Y + PLADLD + +PLPEFID MDWEP+ EV DD DSEYN+ ++ S+ E
Sbjct: 855 GTDFSLDPAYHMLPLADLDQLAEPLPEFIDAMDWEPDIEVLVDDTDSEYNLTDDSSSRGE 914
Query: 799 KGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRKKQKAEVEIMTSSGRRVKRRILDESE 858
KG SS +SGD CS ++S+D + MD +RRSKRKKQK +E MTSSGRRVKRR LDE E
Sbjct: 915 KGCSSSNASGDPGCSTDNSDDEDTHMDCIRRSKRKKQKTGIETMTSSGRRVKRRNLDECE 974
Query: 859 GNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRPQRAAARNARSFFSKITGASTDGEDVDGS 918
GN ++ + ++ S R+ S + S + AA FSKITG +GE+ D
Sbjct: 975 GNVHSSSRSRKGKSGKKSSRRKSSKSKSSRPRRAAARNALH-LFSKITGTPNEGEE-DSL 1032
Query: 919 EGELSESESDLQDSYIESEESGRSLLNEQRKHSKGKGISLDDSEDVTKLDTPESHVNAGI 978
G+ S+S+S LQ+S I+S+ESGR+ N+QR +SKGK + L +SED + E+ VN
Sbjct: 1033 VGDSSDSDSTLQESNIDSDESGRASENDQRNYSKGKEVLLYESEDSKSHEFTETRVNR-- 1090
Query: 979 RRLVLKLPVRDSNK--HELQERTSDKCNQLVSVIGTSSEAHQEATEGNGNRVSYVGNNCS 1036
RRLVLKLP+RDS+K HE + + ++G+SS+ QE + N R S
Sbjct: 1091 RRLVLKLPIRDSSKPAHEFENQ--------AELVGSSSKTAQEFPDFNRKRPSSSEPGYC 1142
Query: 1037 SVDANCGLMERRGRGQFDKLEDYLNLSNGYKDGKIRWGGVRARSSKRLKIGEMMPLDANN 1096
+ + +ER + + D++ D+++L K+RWG VRARS+K L++ E +PL AN
Sbjct: 1143 LGNGSYSSIERTDQVKLDQVTDHVDLLE-----KLRWGVVRARSAKPLRMREDVPLGANP 1197
Query: 1097 GSGIHLDDDKEKESEVNGHVKPEKDGIDISC-GEEITNCGDNTDEVPLKNVKNLSGENND 1155
S + E+E GH + +KD S EI N GD D + N +N +G +
Sbjct: 1198 NSVECRNHLNEEEIVSVGHDREDKDFSGTSTPALEIQN-GDKVDSLTEIN-ENCAGTTSQ 1255
Query: 1156 VYSGDASCKEQQSGFSELNYYDESKCVNTTDEDTTPYPNHLQNGTIQPSELKEILTPVST 1215
++ + E + S DES + + + Q+G Q E VST
Sbjct: 1256 PFNLTEN-GEPLTASSNYRDQDESLVSASMIPENNIFVPVGQSGADQLPEPNIGFPSVST 1314
Query: 1216 KLRIRSKRILRDADVENQNNGCDALHGSSLDIKPNSLPEVLESDGTN-RTSSDRGADGSQ 1274
KLR SKR R+ + + ++ ++ ++ E + ++ G +Q
Sbjct: 1315 KLR--SKRGTRNPESPCKPETKSSVLNNNASSSNANINVNNEEHVVVVKDDNNTGVTSNQ 1372
Query: 1275 RLNA--QIDSTSEHDPLGSHSHSHDPLGSHSHSHSRKMFNVVYRRSKTNRDRTNSEGDGG 1332
R N ++D ++ S SHD L HS+ KMF VYRRS+++R TN DG
Sbjct: 1373 RENCSPEVDVQAKQ-----VSTSHDSL--EPHSNRDKMFKAVYRRSRSHRAVTNL-ADGS 1424
Query: 1333 GVGESTLNANNNNFH----ESATDGSRRTR-SMGLKTTTCDPDNVSSNLRLEQHNQPEDM 1387
G+GEST N +N+NF+ + T+ + T S+ L+ +C P+N SNL+++Q N +
Sbjct: 1425 GLGESTSNGSNSNFNVAVDSNGTNEALHTNGSLELEQGSCVPNNEQSNLKVQQGNGSCMV 1484
Query: 1388 YSGHNRSTSRCQLPHEEWGSSSKMTVGLRSTRNRRTSYLFCDSSPIDRRKTHQSLRKGSW 1447
N S ++ +L EE GSSSK+TVGLRSTRNRR++Y ++SP++RRK+ QS KGSW
Sbjct: 1485 RIPQNVSPNKGKLTEEERGSSSKLTVGLRSTRNRRSTYNIRETSPVNRRKSLQSAVKGSW 1544
Query: 1448 LMLSTHEEGSRYIPQLGDEVVYLRQGHQEYINYSGSREVGPWITVKGNIRAVEFCKVESL 1507
L+LSTHEEG RYIPQ GDEVVYLRQGHQEYI YS RE GPW+++K ++RAVE+C+V+SL
Sbjct: 1545 LLLSTHEEGCRYIPQQGDEVVYLRQGHQEYIEYSRKRESGPWVSLKEHLRAVEYCRVQSL 1604
Query: 1508 EYATASGSGDSCCKMTLKFIDPTSSVSNMTFRLTLPEVTGFPDFLVERTRFDAAIQRNWT 1567
EY+ GSGDSCCKMTL+F+DP SSV TF+LTLPEVTGFPDFLVERTRFDAAIQRNWT
Sbjct: 1605 EYSHVPGSGDSCCKMTLEFLDPNSSVVGKTFKLTLPEVTGFPDFLVERTRFDAAIQRNWT 1664
Query: 1568 CRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWE 1627
RDKC+VWWKNE + G+WW+GR+ VK KSSEFPDSPWERY+V+YK++ ++ HLHSPWE
Sbjct: 1665 RRDKCRVWWKNEDNSSGNWWEGRIQFVKAKSSEFPDSPWERYSVRYKSDLSDEHLHSPWE 1724
Query: 1628 LFDSDTQWEQPRIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVP 1687
LFD+DTQWEQP IDD RNKLLSA K++QS N VQD+YG+ +L+++S K+ FTNRFPVP
Sbjct: 1725 LFDADTQWEQPHIDDHTRNKLLSALTKVQQSGNTVQDRYGLHELEKISNKSKFTNRFPVP 1784
Query: 1688 LSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1747
LS+++IQSRLEN+YYR L+A+KHD++++L+NA S+F ++ ++TKIK LS+ TRTLSSL
Sbjct: 1785 LSIELIQSRLENSYYRSLDALKHDVSILLTNANSFFEKDLVMTTKIKHLSEWFTRTLSSL 1844
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356501869|ref|XP_003519746.1| PREDICTED: uncharacterized protein LOC100796497 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1693 bits (4384), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 947/1756 (53%), Positives = 1173/1756 (66%), Gaps = 124/1756 (7%)
Query: 41 AELDVDVDLREVYFLIMHFLSTGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDE 100
E DVD+DLRE+YFLIMHFLS GPCHRT+ F ELLEHQLLPRRYHAW+SRSG PSGD+
Sbjct: 39 VETDVDIDLREIYFLIMHFLSVGPCHRTFLNFKEELLEHQLLPRRYHAWFSRSGEPSGDD 98
Query: 101 NDD---GMSFPLSYNKLVERYPHIEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAADVPT 157
D+ G+S PL Y+ LV RYPHI KDHLVKLLKQL+++T +P + G +PNAADVPT
Sbjct: 99 ADEDDDGISLPLDYSNLVGRYPHITKDHLVKLLKQLMLSTVNPLHGKLEGSSPNAADVPT 158
Query: 158 LLGRGSFSLLSYDRDKGQNEIDHPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIR 217
LLG GSFSLL+ DR + PP +MRWPHM A+QV+GL LREIGGGFT+HHR+PSIR
Sbjct: 159 LLGYGSFSLLNVDRKTADKLVKPPPLYMRWPHMKANQVQGLSLREIGGGFTKHHRSPSIR 218
Query: 218 AACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYC 277
+ACYAIAKPSTMVQKMQNIK++RGHR AVYCAIFD SGRYVI+GSDDRLVKIWSMETA+C
Sbjct: 219 SACYAIAKPSTMVQKMQNIKKLRGHRVAVYCAIFDGSGRYVISGSDDRLVKIWSMETAFC 278
Query: 278 LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSP 337
LASCRGHEGDITDLAVSSNNALVASASND +IRVWRLPDG+PISVLRGHT AV I FSP
Sbjct: 279 LASCRGHEGDITDLAVSSNNALVASASNDFVIRVWRLPDGMPISVLRGHTGAVNTITFSP 338
Query: 338 RPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP-----SSSAGPQS 392
+YQLLSSSDDGTCRIWDAR S +PRIY+PRP DA+ G+ AP SSS QS
Sbjct: 339 --SVIYQLLSSSDDGTCRIWDARNSH-NPRIYVPRPPDAINGKGNAPPASLPSSSNVQQS 395
Query: 393 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 452
+Q+ CCA+NANGTVFVTGSSDT ARVW+A KPNTDD++QP HE+D+LSGHENDVNYVQFS
Sbjct: 396 YQVLCCAYNANGTVFVTGSSDTYARVWSALKPNTDDAEQPIHEMDLLSGHENDVNYVQFS 455
Query: 453 GCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQ 512
GC+VAS+ +D KE++T KF+N W+CHDNIVTCSRDGSAIIW+PRSR+SH K RWT+
Sbjct: 456 GCSVASKILTSDPWKEENTLKFRNFWYCHDNIVTCSRDGSAIIWVPRSRKSHGKVGRWTR 515
Query: 513 AYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG 572
AYHLKVPPPP+PPQPPRGGPRQR LPTPRGVNMI+WSLDNRFVLAAIMDCRICVWNA DG
Sbjct: 516 AYHLKVPPPPLPPQPPRGGPRQRFLPTPRGVNMIIWSLDNRFVLAAIMDCRICVWNAVDG 575
Query: 573 SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGK 632
SLVHSLTGHTES+YVLDVHPFNPRIAMSAGYDG+TIVWDIWEGIPIR YEI RF+LVDGK
Sbjct: 576 SLVHSLTGHTESSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGIPIRTYEIGRFKLVDGK 635
Query: 633 FSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLA 692
FSPDG SI+LSDDVGQ+Y LNTGQGESQKDAKYDQFFLGDYRPL+QDT G VLDQETQL
Sbjct: 636 FSPDGTSIVLSDDVGQIYFLNTGQGESQKDAKYDQFFLGDYRPLIQDTQGYVLDQETQLP 695
Query: 693 PHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQ 752
PHRRN+Q+PLCDS+M+PYPEPYQ+ +QQRRLGALGIEWRPS +K AVGPDF++ Q Y +
Sbjct: 696 PHRRNIQEPLCDSSMLPYPEPYQSQFQQRRLGALGIEWRPSLIKYAVGPDFTVGQDYPVV 755
Query: 753 PLADLDVMIDPLPEFIDVMDWEPENE-VQSDDNDSEYNVAEEYSTEEKGSLSSTSSGDSE 811
PL DL+VM++P PEF+D M WEPE + + SDD DSEYN A E S+ G S SS D E
Sbjct: 756 PLVDLEVMVEPQPEFLDAMFWEPEYDIIVSDDADSEYN-ANEDSSSAAGQGSVISSSDLE 814
Query: 812 CSAEDSEDGENPMDGLRRSKRKKQKAEVEIMTSSGRRVKRRILDESEGNAAFGNKRTRKS 871
S D + DGLRRS+RKK +MTSSGRRV++R LDE GN + N+ +KS
Sbjct: 815 YS-----DDSSNRDGLRRSRRKKHN----VMTSSGRRVRKRNLDECNGNTSGSNRLRKKS 865
Query: 872 GNRQKSSRRKSSTSKSLRPQRAAARNARSFFSKITGASTDGEDVDGSEGELSESESDLQD 931
K+S+RKSS +K+LRPQR AA NARS FS+I STDGED D E E S+S D D
Sbjct: 866 KGSSKASKRKSSIAKTLRPQRIAAHNARSMFSQIDETSTDGEDNDSDE-EASDSFQDPDD 924
Query: 932 SYIESEESGRSLLNEQRKHSKGKGISLDDSEDVTKLDT-PESHVNAGIR-RLVLKLPVRD 989
ES R + N KH + K L+ V+K ES VN R RLV+K +RD
Sbjct: 925 ----LSESEREMDN---KHLEIKKPLLEKFATVSKPPAFSESLVNVETRPRLVVKFSLRD 977
Query: 990 SNKHELQERTSDKCNQLVSVIGTSSEAHQEATEGNG--NRVSYVGNNCSSVDANCGLMER 1047
S K+ E T C +++ SS E ++ + S S V N L +
Sbjct: 978 SKKNVPTEDTRLACETQDNMVSQSSRPQPEESDQKTFPDTKSLDPALSSMVATNAELPQS 1037
Query: 1048 RGRGQFDKLEDYLNLSNGYKDGKIRWGGVRARSSKRLKIGEMMPLDANNGSGIHLDDDKE 1107
+ D E N +N R+ +++K + + + D
Sbjct: 1038 LNGNENDDKEQTENATNNLY--AFRYVEANTDQCRKMKTHTHELSRSGDALLTDAEIDDL 1095
Query: 1108 KESEVNGHVKPE-----KDGIDISCGEEITNCGDNTDEVPLKNVKNLSGENNDVY----- 1157
E NG+VKPE + + E NT+ ++ S ++
Sbjct: 1096 LEHNANGYVKPEMNLRKRRSEHVIGKLETVGSMVNTELTDFEDAPKFSSLEPSLFGNPQP 1155
Query: 1158 SGDASCKEQQSGFSELNYYDESKC-VNTTDEDTTPYPNHLQNGTIQPS----ELKEILTP 1212
+ D S SG+ + N D+ + + EDT L+N + S +LK
Sbjct: 1156 NADGSL---TSGYDKFNEGDKGQSGSDKCAEDT------LENNEVVHSSHCHDLKMKAPV 1206
Query: 1213 VSTKLRIRSKRILRDAD--------VENQNNGCD---ALHGSSLDIKPNSLPEVLESDGT 1261
STKL I+ K+I D + ++ C + +S + PN + EV E +
Sbjct: 1207 KSTKLVIKKKQISADTEGPCKLKIVSSKADSSCARGIGISENSSSMGPNLVTEVPEGEDD 1266
Query: 1262 NRTSSDRGADGSQRLNAQIDSTSEHDPLGSHSHSHDPLGSHSHSHSRKMFNVVYRRSKTN 1321
+ SS P HS+S R ++ ++R K+
Sbjct: 1267 RKFSS-------------------------------PQLLHSYSDKRS-YDHFHKRDKSY 1294
Query: 1322 RDRTNSEGDGG---GVGESTLNANNNN-----FHESATDGSRRTRSMGLKTTTCDPDNVS 1373
+ + N +G +GE T +N + + +D R+TR + +KTT+ +P +
Sbjct: 1295 KGKVNQDGFESFDCDMGEHTSVFSNQHGLGIGLSDVTSDPMRQTRFIRMKTTSEEPSTSN 1354
Query: 1374 SNLRLEQHNQPEDMYSGHNRSTSRCQLPHEEWGSSSKMTVGLRSTRNRRTSYLFCDSSPI 1433
+++ Q Q S S++R S ++ +R+ R+R Y+ DS +
Sbjct: 1355 RRIKIRQ-GQSSRGKSDREDSSTRM---------SDQLHRRIRTARHRNGEYIANDSGTL 1404
Query: 1434 DRRKTHQSLRKGSWLMLSTHEEGSRYIPQLGDEVVYLRQGHQEYINYSGSREVGPWITVK 1493
RR ++ ++K SWLMLS EEG RYIPQLGDEVVYLRQGHQEYI E GPW +
Sbjct: 1405 TRRVSNHHVKKLSWLMLSEPEEGYRYIPQLGDEVVYLRQGHQEYIKSYSLSESGPWRSFT 1464
Query: 1494 GNIRAVEFCKVESLEYATASGSGDSCCKMTLKFIDPTSSVSNMTFRLTLPEVTGFPDFLV 1553
G + A E CKVE LEYA GSGDSCCK+ L+F+DP+S V +F+LTLPE+ F DF++
Sbjct: 1465 G-LGASEICKVEELEYAELPGSGDSCCKLKLRFLDPSSCVHGKSFKLTLPELINFTDFVI 1523
Query: 1554 ERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQY 1613
E+T +D A++RNW+ RDKC VWW+NE + GSWWDGR++ V+ KS +FP+SPWERY VQY
Sbjct: 1524 EKTWYDTAMKRNWSSRDKCMVWWRNEDGKGGSWWDGRIIQVQAKSDDFPESPWERYRVQY 1583
Query: 1614 KTEPTETHLHSPWELFDSDTQWEQPRIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQ 1673
KT+PTE HLHSPWEL+DS+ WE P ID + R+KLLS F KL++ +R ++++ +Q L Q
Sbjct: 1584 KTDPTENHLHSPWELYDSEMLWEHPHIDHEIRDKLLSYFTKLDRRVSRYEERFDIQALNQ 1643
Query: 1674 VSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFG--RNTDLST 1731
V++K F NRFP P ++IQSRL+N+YYR +E V HDI +MLSNAE YF +N L
Sbjct: 1644 VAEKLEFANRFPAPFYPELIQSRLKNDYYRSVEGVNHDIMIMLSNAEEYFKITKNVQLVG 1703
Query: 1732 KIKRLSDLVTRTLSSL 1747
KI+R+S+ R L +
Sbjct: 1704 KIRRISEWFRRKLERI 1719
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1757 | ||||||
| TAIR|locus:2158044 | 1677 | AT5G49430 "AT5G49430" [Arabido | 0.668 | 0.700 | 0.579 | 0.0 | |
| TAIR|locus:2061997 | 1520 | AT2G47410 "AT2G47410" [Arabido | 0.503 | 0.581 | 0.672 | 0.0 | |
| UNIPROTKB|E1BSG1 | 2293 | BRWD1 "Uncharacterized protein | 0.149 | 0.114 | 0.305 | 5.8e-79 | |
| RGD|1559445 | 1799 | Brwd3 "bromodomain and WD repe | 0.165 | 0.161 | 0.312 | 2.1e-74 | |
| FB|FBgn0011785 | 2232 | BRWD3 "BRWD3" [Drosophila mela | 0.207 | 0.163 | 0.259 | 3.7e-73 | |
| DICTYBASE|DDB_G0285837 | 2200 | DDB_G0285837 "BRWD group prote | 0.126 | 0.100 | 0.319 | 1.5e-59 | |
| MGI|MGI:1890651 | 2304 | Brwd1 "bromodomain and WD repe | 0.220 | 0.167 | 0.273 | 6.1e-57 | |
| RGD|1309030 | 2303 | Brwd1 "bromodomain and WD repe | 0.220 | 0.168 | 0.271 | 2.4e-55 | |
| UNIPROTKB|Q9NSI6 | 2320 | BRWD1 "Bromodomain and WD repe | 0.220 | 0.166 | 0.269 | 4.9e-55 | |
| UNIPROTKB|Q8WWQ0 | 1821 | PHIP "PH-interacting protein" | 0.244 | 0.236 | 0.280 | 4.3e-54 |
| TAIR|locus:2158044 AT5G49430 "AT5G49430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3415 (1207.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 705/1216 (57%), Positives = 837/1216 (68%)
Query: 1 MALRKYIPSADAPSGTMKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFL 60
MALRK P D+ S MKPL+FS K+ N Q+ D Q ++D+DLREVYFL++H L
Sbjct: 1 MALRKNTPKGDSVSLPMKPLNFSRKLPGNVQIPDPDIVQSVAPNIDLDLREVYFLMLHLL 60
Query: 61 STGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPH 120
S+GPC +TY +ELLEH+LLPRRYHAWYSRSGLPSGDENDDG SFPL+Y +L +RY H
Sbjct: 61 SSGPCQKTYALLRHELLEHELLPRRYHAWYSRSGLPSGDENDDGNSFPLNYTELAKRYSH 120
Query: 121 IEKDHLVKLLKQLII--NTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEI 178
++KDHLV+LLKQL+ N +PSR + G+ A VPTLLG GSFSLLS D++ +++
Sbjct: 121 VKKDHLVELLKQLVFVSNRPNPSRGIGDGNKMIGAGVPTLLGTGSFSLLSSDKEIVGSDL 180
Query: 179 DHPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKR 238
PP MRWPHM+ADQVRG+ LREIGGGF RHHRAPSIRAACY IAKPS+MVQKMQNIKR
Sbjct: 181 KPPPIGMRWPHMHADQVRGISLREIGGGFARHHRAPSIRAACYVIAKPSSMVQKMQNIKR 240
Query: 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXX 298
+RGHRNAVYCAI DRSGRYVITGSDDRLVK+WSM+TAYCLASCRGHEGDITD
Sbjct: 241 LRGHRNAVYCAILDRSGRYVITGSDDRLVKVWSMDTAYCLASCRGHEGDITDLAVSSNNI 300
Query: 299 XXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358
DC+IRVWRLPDGLP+SVLRGHT AVTAIAFSPRPGS YQLLSSSDDGTCRIWD
Sbjct: 301 FIASASNDCVIRVWRLPDGLPVSVLRGHTGAVTAIAFSPRPGSPYQLLSSSDDGTCRIWD 360
Query: 359 ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARV 418
AR +QF+PRIY+PRP G+N PSSS QSHQIFCCAFNA+G+VFVTGSSDTLARV
Sbjct: 361 ARGAQFAPRIYVPRPPSP-DGKNSGPSSSNAQQSHQIFCCAFNASGSVFVTGSSDTLARV 419
Query: 419 ---WNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475
W+A K NTDD +QPNHE+DVL+GHENDVNYVQFSGCA S+FS+ D SK+++ PKFK
Sbjct: 420 YSVWSANKTNTDDPEQPNHEMDVLAGHENDVNYVQFSGCAAGSKFSVTDYSKDENVPKFK 479
Query: 476 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVXXXXXXXXXXXXXXXXX 535
NSWFCHDNIVTCSRDGSAIIWIPR RRSH K+ RWT+AYHLKV
Sbjct: 480 NSWFCHDNIVTCSRDGSAIIWIPRLRRSHGKSCRWTRAYHLKVPPPPMPPQPPRGGPRQR 539
Query: 536 ILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNP 595
ILPTPRGVNMI WSLDNRFVLAAIMDCRICVWNA+DGSLVHSLTGHT STYV+DVHPFNP
Sbjct: 540 ILPTPRGVNMIAWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTASTYVMDVHPFNP 599
Query: 596 RIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 655
RIAMSAGYDGKTIVWDIWEGIPI+IY+IS ++LVDGKFSPDG SIILSDDVGQLYIL+TG
Sbjct: 600 RIAMSAGYDGKTIVWDIWEGIPIQIYDISHYKLVDGKFSPDGTSIILSDDVGQLYILSTG 659
Query: 656 QGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQ 715
QG+SQKDAKYDQFFLGDYRPL+QDTYGNVLDQE+QL P+RRN++DPLCDS MIPY EPYQ
Sbjct: 660 QGDSQKDAKYDQFFLGDYRPLIQDTYGNVLDQESQLQPYRRNMEDPLCDSGMIPYEEPYQ 719
Query: 716 TMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEP 775
T +Q+RRLGALG EWRPSSLKLAVGPD +LD+ YQ+ PLADLD + +PLPEFIDVM+WEP
Sbjct: 720 TTFQKRRLGALGKEWRPSSLKLAVGPDITLDRDYQMPPLADLD-LAEPLPEFIDVMEWEP 778
Query: 776 ENEVQSDDNDSEYNVAEEYXXXXXXX-XXXXXXXXXXXXXXDSEDGENPMDGLRRSKRKK 834
E ++ SD+NDSEYNV EEY +S + ++ + LRRSKRKK
Sbjct: 779 EVDILSDENDSEYNVPEEYSSGKEQECLNSSTSGESGSSSGESYEDDDHQNSLRRSKRKK 838
Query: 835 QKAEVEIMTSSGRRVKRRILDESEGNAAFGNKRTXXXXXXXXXXXXXXXXXXXLRPQXXX 894
K E IMTSSGRRVK+R DE EG A KRT RP+
Sbjct: 839 HKKEAGIMTSSGRRVKKRNFDELEG-APSNKKRTRKSRSGRKESKRKSSKSKSSRPRRAA 897
Query: 895 XXXXXSFFSKITGASTXXXXXXXXXXXXXXXXXXXXXXYIESE-ESGRSLLNEQRKHSKG 953
S+FSKITG S + E +LLN K SKG
Sbjct: 898 ARNALSWFSKITGTSKDAEEEEVSELSDSSESESTTQDSGTGDSELEVALLNGHGKQSKG 957
Query: 954 KGISLDDSED-VTKLDTPESHVNAGIRRLVLKLPVRDSNKHELQERT-SDKCNQLVSVIG 1011
K I + DS+D + D E+H A RRLVL+ PVR+S+K L E C+ +G
Sbjct: 958 KTILVCDSDDGAQQCDIRETHT-AERRRLVLRFPVRNSDKLTLLENLPGSSCDVPSPTLG 1016
Query: 1012 TSSEAHQEATEGNGNRVSYVGNNCSSVDANCGLME----RRGRGQFDKLEDYLNLS---- 1063
E + GN+ + G + S V G+++ +R RG+ + +
Sbjct: 1017 NGCT---EDSRIPGNQ--FEGLDVSKV--KWGMVKARTTKRIRGEAISSHELMGSDPEGK 1069
Query: 1064 -NGYK-DGKIRWGGVRARSSKRLKIG-EMMPLDANNGSGIHLDDDKEKESEVNGHVKPEK 1120
N K D R GV A S LK + M +D + L + ++ E++G
Sbjct: 1070 ENNVKEDSNHRGNGVTAPSCLELKTDIDDMAVDTDTVISNGLPNGGKRYPELDGSPSRVA 1129
Query: 1121 DGIDISCGEEITNCGDNTDEVP-----LK-NVKNLSG--ENNDVYSGDASCKEQQSGFSE 1172
D + + +T+ D D +P LK K +S + + G + +Q++G S+
Sbjct: 1130 DDKASNSSQNVTHRHDLIDSLPPISTTLKIRSKRVSRAPDTSLRQEGKSLSIDQETGGSD 1189
Query: 1173 -LNY-YDESKCVNTTD 1186
LN ++++KC T D
Sbjct: 1190 ALNDGFEDAKCDLTLD 1205
|
|
| TAIR|locus:2061997 AT2G47410 "AT2G47410" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3132 (1107.6 bits), Expect = 0., Sum P(3) = 0.
Identities = 601/894 (67%), Positives = 686/894 (76%)
Query: 17 MKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFLSTGPCHRTYGQFWNEL 76
M+P + + V N L D S + D+D+DLREVYFLI+HFLS GPC RT+G +E+
Sbjct: 11 MEPSNLAKLVQGNVPLQPHD-SHSSLTDLDMDLREVYFLILHFLSIGPCERTFGHLRDEI 69
Query: 77 LEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPHIEKDHLVKLLKQLIIN 136
LE LLPRRYH+W+SRSG+ SG +DDG+S PLSY+ L+ERYPHIEKDHLVKLLKQLI+N
Sbjct: 70 LEKGLLPRRYHSWWSRSGIYSGRADDDGISLPLSYDNLIERYPHIEKDHLVKLLKQLILN 129
Query: 137 TSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEIDHPPAHMRWPHMYADQVR 196
S PS + G+APNAADVPTLLG G+FSL+ + + H +++RWPHM+ADQVR
Sbjct: 130 PSFPSHMRVEGNAPNAADVPTLLGSGTFSLVDRSNNIESQKARHVASYLRWPHMHADQVR 189
Query: 197 GLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGR 256
GL LREIGGGF +HHRAPSI +AC+AIAKPSTMVQKMQNIK++RGHRNAVYCAIFDRSGR
Sbjct: 190 GLSLREIGGGFRKHHRAPSILSACHAIAKPSTMVQKMQNIKKLRGHRNAVYCAIFDRSGR 249
Query: 257 YVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVWRLPD 316
YVITGSDDRLVKIWSMETA CLASCRGHEGDITD D +IRVWRLPD
Sbjct: 250 YVITGSDDRLVKIWSMETALCLASCRGHEGDITDLAVSSNNALVASASNDFVIRVWRLPD 309
Query: 317 GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDA 376
G+PISVLRGHT AVTAIAFSPR SVYQLLSSSDDGTCRIWDARYSQ+ PRIY+P PSDA
Sbjct: 310 GMPISVLRGHTGAVTAIAFSPRQASVYQLLSSSDDGTCRIWDARYSQWLPRIYVPSPSDA 369
Query: 377 VAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 436
G S+S QSHQI CCA+NANGT+FVTGSSD+ ARVW+A KPN DD++QP HE+
Sbjct: 370 NTG-----STSNASQSHQILCCAYNANGTIFVTGSSDSNARVWSASKPNLDDAEQPTHEL 424
Query: 437 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW 496
DVL GHENDVNYVQFSGCAVA + S AD+ KEDS PKFKNSWFCHDNIVTCSRDGSAIIW
Sbjct: 425 DVLRGHENDVNYVQFSGCAVAPKSSTADALKEDSYPKFKNSWFCHDNIVTCSRDGSAIIW 484
Query: 497 IPRSRRSHPKAARWTQAYHLKVXXXXXXXXXXXXXXXXXILPTPRGVNMIVWSLDNRFVL 556
PRSR+ H K+ RW + YHLKV LPTPRGVNMI+WSLDNRFVL
Sbjct: 485 TPRSRKFHGKSGRWMKGYHLKVPPPPLPPQPPRGGPRQRFLPTPRGVNMIIWSLDNRFVL 544
Query: 557 AAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI 616
AAIMDCRICVWNAADGSLVH LTGH+ES+YVLDVHPFNPRIAMSAGYDGKTI+WDIWEGI
Sbjct: 545 AAIMDCRICVWNAADGSLVHCLTGHSESSYVLDVHPFNPRIAMSAGYDGKTIIWDIWEGI 604
Query: 617 PIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPL 676
PI++YEI RF+LVDGKFS DG SI+LSDDVGQ+Y LNTGQGESQK+AKYDQFFLGDYRPL
Sbjct: 605 PIKVYEIGRFKLVDGKFSQDGTSIVLSDDVGQIYFLNTGQGESQKNAKYDQFFLGDYRPL 664
Query: 677 VQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLK 736
++DT G+VLDQETQL PHRRNLQD LCDS+MIPYPEP QTM+QQRRLGALG+EWRPSS+K
Sbjct: 665 IRDTNGHVLDQETQLLPHRRNLQDLLCDSSMIPYPEPDQTMFQQRRLGALGVEWRPSSIK 724
Query: 737 LAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEPENEVQSDDNDSEYNVAEEYXX 796
+VGPDFSL Q Y + PLADLD +I+PLPEFID M WEPE+EV SDDNDSEYN AE
Sbjct: 725 FSVGPDFSLGQDYIMPPLADLDRLIEPLPEFIDAMYWEPEHEVLSDDNDSEYN-AEVSSD 783
Query: 797 XXXXXXXXXXXXXXXXXXXDSEDGENPMDGLRRSKRKKQKAEVEIMTSSGRRVKRRILDE 856
DS D EN + KR+++ +V + TSSGRR KR ILDE
Sbjct: 784 GARASPCSNSSNELECSSEDS-DVENIHESSYHWKRRRKHPKVNVSTSSGRRDKR-ILDE 841
Query: 857 SEGNAAFGNKRTXXXXXXXXXXXXXXXXXXXLRPQXXXXXXXXSFFSKITGAST 910
++ + + G KRT RPQ S SKI+G+S+
Sbjct: 842 NDSSNS-GIKRTKNRRIVVKASKRKHSDVKASRPQRAAAQNARSLLSKISGSSS 894
|
|
| UNIPROTKB|E1BSG1 BRWD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 330 (121.2 bits), Expect = 5.8e-79, Sum P(6) = 5.8e-79
Identities = 91/298 (30%), Positives = 139/298 (46%)
Query: 440 SGHENDVNYVQFSGCAVASRFSLADSSKED-STPKFKNSWFCHDNIVTCSRDGSAIIWIP 498
+G + V + + G R + +S + + +F NS D ++ SRDG+A IW
Sbjct: 344 TGSTDHVIRMYYFGSETPERIAELESHADKVDSIQFSNSG---DRFISGSRDGTARIW-- 398
Query: 499 RSRRSHPKAARWTQAYHLKVXXXXXXXXXXXXXXXXXILPTPRGVNMIVWSLDNRFVLAA 558
R+ +A + P+ V MI W+ D+ +V+ A
Sbjct: 399 ----------RFEEAEWRSILLDMSDRLPGDMCSDEDKFMRPK-VTMIAWNQDDNYVVTA 447
Query: 559 IMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 618
+ + + VWN++ G L+H L GH + +VL+ HPF+ RI +SAG+DG +WDI +G
Sbjct: 448 VNNHLLKVWNSSTGQLLHDLVGHADEVFVLETHPFDSRIMLSAGHDGNIFIWDITKGTKT 507
Query: 619 RIYEISRFRLVDG---------KFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFF 669
+ Y F +++G KFSPDG +D G L I G + + FF
Sbjct: 508 KHY----FNMIEGQGHGAVFDCKFSPDGQHFACTDSHGHLLIFGFGCSKPYEKIPDQMFF 563
Query: 670 LGDYRPLVQDTYGNVLDQETQLAPHRRNLQDP--LCDSAMIPYPEPYQTMYQQRRLGA 725
DYRPL++D+ VLD++TQ APH L P L D P+P YQ + R A
Sbjct: 564 HTDYRPLIRDSNNYVLDEQTQQAPH---LMPPPFLVDVDGNPHPTKYQRLVPGRENSA 618
|
|
| RGD|1559445 Brwd3 "bromodomain and WD repeat domain containing 3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 315 (115.9 bits), Expect = 2.1e-74, Sum P(6) = 2.1e-74
Identities = 101/323 (31%), Positives = 149/323 (46%)
Query: 103 DGMSFPLSYNKLVERYPHIEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAAD-VPTLLGR 161
+G S+ LV HI D+L+K+ +++ P ++ + P + V TLLG
Sbjct: 49 EGKEHRRSFEDLVAANAHIPPDYLLKICERI-----GP---LLDKEIPQSVPGVQTLLGV 100
Query: 162 GSFSLLSYDRD-KGQ--NEIDHPPAHM-RWPHMYADQVRGLGLREIGGGFTRHHRAPSIR 217
G SLL +D K N H R P + + V+ + I R S R
Sbjct: 101 GRQSLLRDAKDCKNTLWNGSAFAALHRGRPPELPVNYVKPPNVVNIXS--XRQXTGCS-R 157
Query: 218 AACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYC 277
+ PS+ Q ++ KR+ GH ++VYC FDRSGR + TGSDD LVKIW+ +
Sbjct: 158 ---FXHXFPSSAYQHIKMHKRILGHLSSVYCVAFDRSGRRIFTGSDDCLVKIWATDDGRL 214
Query: 278 LASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSP 337
LA+ RGH +I+D D ++RVW L P++VL+GH+A++T+I F P
Sbjct: 215 LATLRGHSAEISDMAVNYENTLIAAGSCDKVVRVWCLRTCAPVAVLQGHSASITSIQFCP 274
Query: 338 RP-GSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF 396
G+ L S+ DGT W R RP S G Q I
Sbjct: 275 STKGTTRYLTSTGADGTICFWQWHVKTMKFR---DRPV------KFTERSRPGVQ---IS 322
Query: 397 CCAFNANGTVFVTGSSDTLARVW 419
C +F++ G TGS+D + R++
Sbjct: 323 CSSFSSGGMFITTGSTDHVIRIY 345
|
|
| FB|FBgn0011785 BRWD3 "BRWD3" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 309 (113.8 bits), Expect = 3.7e-73, Sum P(4) = 3.7e-73
Identities = 112/432 (25%), Positives = 189/432 (43%)
Query: 110 SYNKLVERYPHIEKDHLVKLLKQL--IINTSSPSRAMIGGDAPNAADVPTLLGRGSFSLL 167
++ +L +Y HI +HL+++ +L +++ P P+ + +LLG G +LL
Sbjct: 60 TFEELERKYKHIGANHLLEICSRLGPLVDRELP---------PSVPGINSLLGTGRQNLL 110
Query: 168 SYD---------RD--KGQNEIDHPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSI 216
RD N + P + + P D+V L RE GG R
Sbjct: 111 RTKETVYCHRSLRDYCTRLNGVSLPDSVLTKPTHNLDRV--LTGREHGGEVRRK------ 162
Query: 217 RAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY 276
+ P+ + ++ + ++R GH ++VYC +FDR+GRY+ITG+DD L+KIWS
Sbjct: 163 ------LLVPTDLYRRTKLLRRTVGHLSSVYCVLFDRTGRYIITGADDLLIKIWSAADGR 216
Query: 277 CLASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFS 336
LA+ RG +ITD D I+RVW + PI+VL HT +T++ F
Sbjct: 217 LLATLRGASSEITDIAINLDNTMLAAGSLDHILRVWDMQTTSPIAVLSAHTGMITSVNFC 276
Query: 337 PRPGS-VYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 395
P P S + L+++S DG+ W + + P+P+ + P + Q+
Sbjct: 277 PSPRSDLKYLVTTSTDGSIAFWQYSTPRGQKITFAPKPTQY--HEKLRPGQA------QM 328
Query: 396 FCCAFNANGTVFVTGSSDTLARVWNACK--PN--------TD--DSDQPNHE-IDVLSGH 442
C F+ G GS+D RV+ + P TD DS Q +H + +SG
Sbjct: 329 MCTTFSPGGIFLAAGSADHHVRVYMMGEDGPKRILETEAYTDAVDSVQWSHRGLRFISGS 388
Query: 443 ENDVNYV------QFSGCAVASRFSLADSSKEDSTPKFKNS---WFCHDN-IVTCSRDGS 492
++ ++ Q+ + LA + + + K + W D ++T D +
Sbjct: 389 KDGTAHIWTFESQQWKSSKLCMTERLASCPEPEEGKRLKVTMVAWDASDRYVITAVNDFT 448
Query: 493 AIIWIPRSRRSH 504
IW +S + H
Sbjct: 449 IKIWDSKSAKLH 460
|
|
| DICTYBASE|DDB_G0285837 DDB_G0285837 "BRWD group protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 315 (115.9 bits), Expect = 1.5e-59, Sum P(7) = 1.5e-59
Identities = 77/241 (31%), Positives = 118/241 (48%)
Query: 482 DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVXXXXXXXXXXXXXXXXXILPTPR 541
D IV+ S DG+ IIW H +W H+ + +
Sbjct: 606 DAIVSGSYDGTVIIW------RHSGGPKWD---HVIFNIKNTQRPNQANSHPKKVARSKA 656
Query: 542 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 601
++WS D+RF++ + I VWN+ DGS + HT YV HPF+ R+ MS+
Sbjct: 657 TFKNVIWSHDDRFIITTDYNM-IRVWNSLDGSFHLEMAEHTSEVYVTSCHPFDSRLIMSS 715
Query: 602 GYDGKTIVWDIWEGIPIRIYEISR--FR--LVDGKFSPDGASIILSDDVGQLYILNTGQG 657
GYD + I+W I G I+ + + F+ ++DG FSPDG I+++ G+ ++ G G
Sbjct: 716 GYDSQVILWSIETGEIIKKFVLQEPGFQCQILDGCFSPDGQKFIVTNSTGKWFMFELGLG 775
Query: 658 ESQKDAKY----DQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEP 713
+ K +Q+FL DY PL++D GNVLD+ TQ PH + L + +PYP+
Sbjct: 776 SDINNLKKLVPNEQYFLTDYHPLIRDANGNVLDELTQTPPHLMP-RAMLVNYQGLPYPDH 834
Query: 714 Y 714
Y
Sbjct: 835 Y 835
|
|
| MGI|MGI:1890651 Brwd1 "bromodomain and WD repeat domain containing 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 370 (135.3 bits), Expect = 6.1e-57, Sum P(4) = 6.1e-57
Identities = 121/442 (27%), Positives = 201/442 (45%)
Query: 306 DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS 365
DC++++W +G +S LRGH+A ++ +A + + + S D R+W R +
Sbjct: 207 DCLVKIWSTHNGRLLSTLRGHSAEISDMAVNYENTLI---AAGSCDKIIRVWCLRTC--A 261
Query: 366 PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTV-FVTGSSDTLARVWNACKP 424
P + + ++ +P + GPQ + + + A+GTV F ++L + +P
Sbjct: 262 PVAVLQGHTGSITSLQFSPMAK-GPQRYMV---STGADGTVCFWQWDLESLKF---SPRP 314
Query: 425 NTDDSDQPNHEIDVLSGHENDVNYVQFSGCA--VASRFSLA-DSSK-----EDSTPKFKN 476
+++P + +L + +G V + L D+ + E T K +
Sbjct: 315 -LKFTEKPRPGVQMLCSSFSVGGMFLATGSTDHVIRMYFLGFDAPEKIAELESHTDKVDS 373
Query: 477 SWFCH--DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVXXXXXXXXXXXXXXXX 534
FC+ D ++ SRDG+A IW R+ Q +
Sbjct: 374 IQFCNNGDRFLSGSRDGTARIW------------RFEQLEWRSILLDMSARISGDTSSEE 421
Query: 535 XILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFN 594
P+ V MI W+ D+ V+ A+ D + VW++ G L+H+L GH + +VL+ HPF+
Sbjct: 422 ERFMKPK-VTMIAWNQDDSTVVTAVNDHVLKVWSSYTGQLLHNLLGHADEVFVLETHPFD 480
Query: 595 PRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDG---------KFSPDGASIILSDD 645
RI +SAG+DG +WDI +GI ++ Y F +++G KFS DG +D
Sbjct: 481 SRIMLSAGHDGSIFIWDITKGIKMKHY----FNMIEGQGHGAVFDCKFSQDGQHFACTDS 536
Query: 646 VGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDP--LC 703
G L I G + + FF DYRPL++D+ VLD++TQ APH L P L
Sbjct: 537 HGHLLIFGFGCSKPYEKIPDQMFFHTDYRPLIRDSNNYVLDEQTQQAPH---LMPPPFLV 593
Query: 704 DSAMIPYPEPYQTMYQQRRLGA 725
D P+P +Q + R A
Sbjct: 594 DVDGNPHPTKFQRLVPGRENSA 615
|
|
| RGD|1309030 Brwd1 "bromodomain and WD repeat domain containing 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 370 (135.3 bits), Expect = 2.4e-55, Sum P(5) = 2.4e-55
Identities = 120/442 (27%), Positives = 197/442 (44%)
Query: 306 DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS 365
DC++++W +G +S LRGH+A ++ +A + + + S D R+W R +
Sbjct: 207 DCLVKIWSTHNGRLLSTLRGHSAEISDMAVNYENTLI---AAGSCDKIIRVWCLRTC--A 261
Query: 366 PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTV-FVTGSSDTLA------RV 418
P + + ++ +P + GPQ + + + A+GTV F ++L +
Sbjct: 262 PVAVLQGHTGSITSLQFSPMAK-GPQRYMV---STGADGTVCFWQWDLESLKFSPRPLKF 317
Query: 419 WNACKPNTDD--SDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKN 476
+P S + + +G + V + F G + + E T K +
Sbjct: 318 TEKPRPGVQMLCSSFSVGGMFLATGSTDHVIRMYFLGFEAPEKIA----ELESHTDKVDS 373
Query: 477 SWFCH--DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVXXXXXXXXXXXXXXXX 534
FC+ D ++ SRDG+A IW R+ Q +
Sbjct: 374 IQFCNNGDRFLSGSRDGTARIW------------RFEQLEWKSILLDMAARISGDTSAEE 421
Query: 535 XILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFN 594
P+ V MI W+ D+ V+ A+ D + VW++ G L+H+L GH + +VL+ HPF+
Sbjct: 422 ERFMKPK-VTMIAWNQDDSTVVTAVNDHVLKVWSSYTGQLLHNLLGHADEVFVLETHPFD 480
Query: 595 PRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDG---------KFSPDGASIILSDD 645
RI +SAG+DG +WDI +GI ++ Y F +++G KFS DG +D
Sbjct: 481 SRIMLSAGHDGSIFIWDITKGIKMKHY----FNMIEGQGHGAVFDCKFSQDGQHFACTDS 536
Query: 646 VGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDP--LC 703
G L I G + + FF DYRPL++D+ VLD++TQ APH L P L
Sbjct: 537 HGHLLIFGFGCSKPYEKIPDQMFFHTDYRPLIRDSNNYVLDEQTQQAPH---LMPPPFLV 593
Query: 704 DSAMIPYPEPYQTMYQQRRLGA 725
D P+P +Q + R A
Sbjct: 594 DVDGNPHPTKFQRLVPGRENSA 615
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| UNIPROTKB|Q9NSI6 BRWD1 "Bromodomain and WD repeat-containing protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 363 (132.8 bits), Expect = 4.9e-55, Sum P(4) = 4.9e-55
Identities = 119/442 (26%), Positives = 195/442 (44%)
Query: 306 DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS 365
DC++++W +G +S LRGH+A ++ +A + + + S D R+W R +
Sbjct: 207 DCLVKIWSTHNGRLLSTLRGHSAEISDMAVNYENTMI---AAGSCDKIIRVWCLRTC--A 261
Query: 366 PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTV-FVTGSSDTLA------RV 418
P + + ++ +P + G Q + + + A+GTV F ++L +
Sbjct: 262 PVAVLQGHTGSITSLQFSPMAK-GSQRYMV---STGADGTVCFWQWDLESLKFSPRPLKF 317
Query: 419 WNACKPNTDD--SDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKN 476
+P S + + +G + V + F G + + E T K +
Sbjct: 318 TEKPRPGVQMLCSSFSVGGMFLATGSTDHVIRMYFLGFEAPEKIA----ELESHTDKVDS 373
Query: 477 SWFCH--DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVXXXXXXXXXXXXXXXX 534
FC+ D ++ SRDG+A IW R+ Q +
Sbjct: 374 IQFCNNGDRFLSGSRDGTARIW------------RFEQLEWRSILLDMATRISGDLSSEE 421
Query: 535 XILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFN 594
P+ V MI W+ ++ V+ A+ D + VWN+ G L+H+L GH + +VL+ HPF+
Sbjct: 422 ERFMKPK-VTMIAWNQNDSIVVTAVNDHVLKVWNSYTGQLLHNLMGHADEVFVLETHPFD 480
Query: 595 PRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDG---------KFSPDGASIILSDD 645
RI +SAG+DG +WDI +G ++ Y F +++G KFS DG +D
Sbjct: 481 SRIMLSAGHDGSIFIWDITKGTKMKHY----FNMIEGQGHGAVFDCKFSQDGQHFACTDS 536
Query: 646 VGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDP--LC 703
G L I G + + FF DYRPL++D+ VLD++TQ APH L P L
Sbjct: 537 HGHLLIFGFGCSKPYEKIPDQMFFHTDYRPLIRDSNNYVLDEQTQQAPH---LMPPPFLV 593
Query: 704 DSAMIPYPEPYQTMYQQRRLGA 725
D P+P YQ + R A
Sbjct: 594 DVDGNPHPTKYQRLVPGRENSA 615
|
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| UNIPROTKB|Q8WWQ0 PHIP "PH-interacting protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 382 (139.5 bits), Expect = 4.3e-54, Sum P(5) = 4.3e-54
Identities = 137/488 (28%), Positives = 213/488 (43%)
Query: 306 DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS 365
DC++++W DG ++ LRGH A ++ +A + + + S D R+W R +
Sbjct: 204 DCLVKIWATDDGRLLATLRGHAAEISDMAVNYENTMI---AAGSCDKMIRVWCLRTC--A 258
Query: 366 PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTV-FVTGSSDTL------ARV 418
P + S ++ +P S + + + A+GT+ F + TL A+
Sbjct: 259 PLAVLQGHSASITSLQFSPLCSGSKR----YLSSTGADGTICFWLWDAGTLKINPRPAKF 314
Query: 419 WNACKPNTDD--SDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLAD--SSKEDSTPKF 474
+P S + + +G + + V F G + S + + K DS +F
Sbjct: 315 TERPRPGVQMICSSFSAGGMFLATGSTDHIIRVYFFGSGQPEKISELEFHTDKVDSI-QF 373
Query: 475 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVXXXXXXXXXXXXXXXX 534
N+ + V+ SRDG+A IW + R W + +
Sbjct: 374 SNT---SNRFVSGSRDGTARIWQFKRRE-------WKS---ILLDMATRPAGQNLQGIED 420
Query: 535 XILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFN 594
I T V M+ W + V+ A+ + + VWN+ G L+H L GH + +VL+ HPF+
Sbjct: 421 KI--TKMKVTMVAWDRHDNTVITAVNNMTLKVWNSYTGQLIHVLMGHEDEVFVLEPHPFD 478
Query: 595 PRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDG---------KFSPDGASIILSDD 645
PR+ SAG+DG IVWD+ G+ IR Y F +++G K SPDG +D
Sbjct: 479 PRVLFSAGHDGNVIVWDLARGVKIRSY----FNMIEGQGHGAVFDCKCSPDGQHFACTDS 534
Query: 646 VGQLYILNTGQGESQKDAKYDQ-FFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDP--L 702
G L I G S+ D DQ FF DYRPL++D VLD++TQ APH L P L
Sbjct: 535 HGHLLIFGFGSS-SKYDKIADQMFFHSDYRPLIRDANNFVLDEQTQQAPH---LMPPPFL 590
Query: 703 CDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMID 762
D P+P YQ + R + P + G + L Q Q ++ LD MI
Sbjct: 591 VDVDGNPHPSRYQRLVPGRE-NCREEQLIPQMGVTSSGLNQVLSQQAN-QEISPLDSMIQ 648
Query: 763 PLPEFIDV 770
L + D+
Sbjct: 649 RLQQEQDL 656
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | AT5G49430 | transducin family protein / WD-40 repeat family protein; transducin family protein / WD-40 repeat family protein; FUNCTIONS IN- nucleotide binding; INVOLVED IN- biological_process unknown; LOCATED IN- CUL4 RING ubiquitin ligase complex; EXPRESSED IN- 17 plant structures; EXPRESSED DURING- 6 growth stages; CONTAINS InterPro DOMAIN/s- WD40 repeat-like (InterPro-IPR011046), WD40 repeat, region (InterPro-IPR017986), WD40/YVTN repeat-like (InterPro-IPR015943), WD40 repeat (InterPro-IPR001680), Bromodomain (InterPro-IPR001487); BEST Arabidopsis thaliana protein match is- nucleotide binding ( [...] (1677 aa) | |||||||||
(Arabidopsis thaliana) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | AT1G65030 | transducin family protein / WD-40 repeat family protein; This gene is predicted to encode a pro [...] (345 aa) | • | 0.599 | |||||||
 | AT2G19430 | transducin family protein / WD-40 repeat family protein; This gene is predicted to encode a pro [...] (367 aa) | • | 0.538 | |||||||
 | AT1G61210 | WD-40 repeat family protein / katanin p80 subunit, putative; WD-40 repeat family protein / kata [...] (1180 aa) | • | • | 0.536 | ||||||
 | SPA2 | SPA2 (SPA1-RELATED 2); protein binding / signal transducer; Encodes a member of the SPA (suppre [...] (1036 aa) | • | 0.467 | |||||||
 | SCD1 | SCD1 (STOMATAL CYTOKINESIS-DEFECTIVE 1); protein binding; Encodes soluble protein containing N- [...] (1187 aa) | • | • | 0.443 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1757 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-51 | |
| cd05529 | 128 | cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repe | 2e-45 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 8e-40 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-38 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-35 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-35 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-24 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-22 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-21 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 8e-20 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-16 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-11 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-10 | |
| smart00297 | 107 | smart00297, BROMO, bromo domain | 1e-09 | |
| pfam00439 | 84 | pfam00439, Bromodomain, Bromodomain | 1e-09 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 5e-08 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-07 | |
| cd04369 | 99 | cd04369, Bromodomain, Bromodomain | 8e-07 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 9e-07 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-06 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 5e-04 | |
| cd05520 | 103 | cd05520, Bromo_polybromo_III, Bromodomain, polybro | 7e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.001 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.002 | |
| cd05519 | 103 | cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfam | 0.002 | |
| pfam05764 | 238 | pfam05764, YL1, YL1 nuclear protein | 0.002 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 0.002 | |
| cd05525 | 106 | cd05525, Bromo_ASH1, Bromodomain; ASH1_like sub-fa | 0.002 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 182 bits (463), Expect = 5e-51
Identities = 97/379 (25%), Positives = 152/379 (40%), Gaps = 92/379 (24%)
Query: 235 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVS 294
+ ++GH V C F G+ + TGS D +K+W +ET L + +GH G + D+A S
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 295 SNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354
++ +AS S+D IR+W L G + L GHT+ V+++AFSP G + L SSS D T
Sbjct: 61 ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPD-GRI--LSSSSRDKTI 117
Query: 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ--IFCCAFNANGTVFVTGSS 412
++WD + + + H + AF+ +GT + S
Sbjct: 118 KVWDVETGKCLTTL----------------------RGHTDWVNSVAFSPDGTFVASSSQ 155
Query: 413 DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 472
D ++W+ + + L+GH +VN V FS D K
Sbjct: 156 DGTIKLWDL---------RTGKCVATLTGHTGEVNSVAFSP----------DGEK----- 191
Query: 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGP 532
+++ S DG+ +W + + T H
Sbjct: 192 -----------LLSSSSDGTIKLWDLSTGKCLG-----TLRGHEN--------------- 220
Query: 533 RQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHP 592
GVN + +S D + + D I VW+ G V +L+GHT S L P
Sbjct: 221 ---------GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP 271
Query: 593 FNPRIAMSAGYDGKTIVWD 611
R+A S DG +WD
Sbjct: 272 DGKRLA-SGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|99958 cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repeat I_like subfamily | Back alignment and domain information |
|---|
Score = 159 bits (405), Expect = 2e-45
Identities = 57/129 (44%), Positives = 80/129 (62%), Gaps = 2/129 (1%)
Query: 1619 ETHLHSPWELFDSDTQWEQPRIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKT 1678
L S WELFD WEQP I D+ R +L+S KL S +Y + +
Sbjct: 2 YNPLSSEWELFDPG--WEQPHIRDEERERLISGLDKLLLSLQLEIAEYFEYPVDLRAWYP 59
Query: 1679 NFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSD 1738
++ NR PVP+ L+ I+SRLEN YYR LEA++HD+ ++LSNAE++ N++++ K KRLSD
Sbjct: 60 DYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNAETFNEPNSEIAKKAKRLSD 119
Query: 1739 LVTRTLSSL 1747
+ R LSSL
Sbjct: 120 WLLRILSSL 128
|
WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 128 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 8e-40
Identities = 67/233 (28%), Positives = 106/233 (45%), Gaps = 38/233 (16%)
Query: 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT 289
++ + ++ + GH + V F GR + + S D+ +K+W +ET CL + RGH +
Sbjct: 80 LETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVN 139
Query: 290 DLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS 349
+A S + VAS+S D I++W L G ++ L GHT V ++AFSP +LLSSS
Sbjct: 140 SVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG---EKLLSSS 196
Query: 350 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ--IFCCAFNANGTVF 407
DGT ++WD + H+ + AF+ +G +
Sbjct: 197 SDGTIKLWDLS----------------------TGKCLGTLRGHENGVNSVAFSPDGYLL 234
Query: 408 VTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS--GCAVAS 458
+GS D RVW+ + LSGH N V + +S G +AS
Sbjct: 235 ASGSEDGTIRVWDLRTGE---------CVQTLSGHTNSVTSLAWSPDGKRLAS 278
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 3e-38
Identities = 80/372 (21%), Positives = 128/372 (34%), Gaps = 93/372 (25%)
Query: 277 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFS 336
+ +GH G +T +A S + L+A+ S D I+VW L G + L+GHT V +A S
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 337 PRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ-- 394
L S S D T R+WD + G H
Sbjct: 61 A---DGTYLASGSSDKTIRLWDLE---------TGECVRTLTG-------------HTSY 95
Query: 395 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 454
+ AF+ +G + + S D +VW+ + L GH + VN V FS
Sbjct: 96 VSSVAFSPDGRILSSSSRDKTIKVWDVETGK---------CLTTLRGHTDWVNSVAFSPD 146
Query: 455 AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 514
F + + S+DG+ +W R+
Sbjct: 147 ---GTF-----------------------VASSSQDGTIKLWDLRT-------------- 166
Query: 515 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSL 574
G + VN + +S D +L++ D I +W+ + G
Sbjct: 167 ---------------GKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211
Query: 575 VHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFS 634
+ +L GH + P + + S DG VWD+ G ++ + +S
Sbjct: 212 LGTLRGHENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWS 270
Query: 635 PDGASII-LSDD 645
PDG + S D
Sbjct: 271 PDGKRLASGSAD 282
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 2e-35
Identities = 54/189 (28%), Positives = 89/189 (47%), Gaps = 27/189 (14%)
Query: 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAV 293
+ + +RGH + V F G +V + S D +K+W + T C+A+ GH G++ +A
Sbjct: 126 KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAF 185
Query: 294 SSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGT 353
S + + S+S+D I++W L G + LRGH V ++AFSP Y L S S+DGT
Sbjct: 186 SPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP---DGYLLASGSEDGT 242
Query: 354 CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ--IFCCAFNANGTVFVTGS 411
R+WD R + + H + A++ +G +GS
Sbjct: 243 IRVWDLRTGECVQTL----------------------SGHTNSVTSLAWSPDGKRLASGS 280
Query: 412 SDTLARVWN 420
+D R+W+
Sbjct: 281 ADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 4e-35
Identities = 70/287 (24%), Positives = 121/287 (42%), Gaps = 56/287 (19%)
Query: 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT 289
++ + ++ ++GH V G Y+ +GS D+ +++W +ET C+ + GH ++
Sbjct: 38 LETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS 97
Query: 290 DLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS 349
+A S + +++S+S D I+VW + G ++ LRGHT V ++AFSP V SSS
Sbjct: 98 SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVA---SSS 154
Query: 350 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT 409
DGT ++WD R + + G ++ AF+ +G ++
Sbjct: 155 QDGTIKLWDLRTGKCVATLT-------------------GHTG-EVNSVAFSPDGEKLLS 194
Query: 410 GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS-------GCAVASRFSL 462
SSD ++W+ +T + L GHEN VN V FS + +
Sbjct: 195 SSSDGTIKLWD---LSTGK------CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRV 245
Query: 463 ADSSKEDSTPKFKNSWFCHDN-------------IVTCSRDGSAIIW 496
D + H N + + S DG+ IW
Sbjct: 246 WDLRTGECVQTLS----GHTNSVTSLAWSPDGKRLASGSADGTIRIW 288
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 1e-24
Identities = 70/340 (20%), Positives = 114/340 (33%), Gaps = 88/340 (25%)
Query: 319 PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVA 378
L+GHT VT +AFSP L + S DGT ++WD + +
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKL---LATGSGDGTIKVWDLETGELLRTLKGH------- 50
Query: 379 GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDV 438
+ + A +A+GT +GSSD R+W+ + +
Sbjct: 51 -------------TGPVRDVAASADGTYLASGSSDKTIRLWDL---------ETGECVRT 88
Query: 439 LSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIP 498
L+GH + V+ V FS + + SRD + +W
Sbjct: 89 LTGHTSYVSSVAFSP---------------------DGRI-----LSSSSRDKTIKVW-- 120
Query: 499 RSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA 558
G + VN + +S D FV ++
Sbjct: 121 ---------------------------DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASS 153
Query: 559 IMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 618
D I +W+ G V +LTGHT + P ++ S+ DG +WD+ G +
Sbjct: 154 SQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLL-SSSSDGTIKLWDLSTGKCL 212
Query: 619 RIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 658
+ FSPDG + + G + + + GE
Sbjct: 213 GTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE 252
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 102 bits (254), Expect = 2e-22
Identities = 91/413 (22%), Positives = 152/413 (36%), Gaps = 88/413 (21%)
Query: 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASC-RGHEGDITDLAVSSNNALVAS 302
+ + + D + + + S D VK+W + T L GH +T LA S + L+AS
Sbjct: 113 SKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLAS 172
Query: 303 ASN-DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY 361
S+ D I++W L G P+S L GHT V+++AFSP + S S DGT R+WD
Sbjct: 173 GSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPD--GGLLIASGSSDGTIRLWDLST 230
Query: 362 SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNA 421
+ V +F+ +G++ +GSSD R+W
Sbjct: 231 GKLLRSTLSGHSDSVV--------------------SSFSPDGSLLASGSSDGTIRLW-- 268
Query: 422 CKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCH 481
D + + LSGH + V V FS
Sbjct: 269 ------DLRSSSSLLRTLSGHSSSVLSVAFSP--------------------------DG 296
Query: 482 DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR 541
+ + S DG+ +W + + T H
Sbjct: 297 KLLASGSSDGTVRLW---DLETGKLLSSLTLKGHEGP----------------------- 330
Query: 542 GVNMIVWSLDNRFVLAAIM-DCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMS 600
V+ + +S D +++ D I +W+ G + +L GH+ + + P ++ S
Sbjct: 331 -VSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVS-S 387
Query: 601 AGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 653
DG +WD+ G +R + R+ FSPDG S+ + + +
Sbjct: 388 GSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 98.2 bits (243), Expect = 5e-21
Identities = 93/382 (24%), Positives = 143/382 (37%), Gaps = 89/382 (23%)
Query: 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSD-DRLVKIWSMETAYCLASCRGHEGDITDLA 292
+ I+ + GH +V F G+ + +GS D +K+W + T L++ GH ++ LA
Sbjct: 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLA 205
Query: 293 VSSNN-ALVASASNDCIIRVWRLPDGLPI-SVLRGHTAAVTAIAFSPRPGSVYQLLSSSD 350
S + L+AS S+D IR+W L G + S L GH+ +V +FSP L S S
Sbjct: 206 FSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSL---LASGSS 261
Query: 351 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG 410
DGT R+WD R S R S + AF+ +G + +G
Sbjct: 262 DGTIRLWDLRSSSSLLRTLS-------------------GHSSSVLSVAFSPDGKLLASG 302
Query: 411 SSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDS 470
SSD R+W+ L GHE V+ + FS
Sbjct: 303 SSDGTVRLWDLETGKL-------LSSLTLKGHEGPVSSLSFSPD---------------- 339
Query: 471 TPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRG 530
+ S DG+ +W R+ +
Sbjct: 340 ---------GSLLVSGGSDDGTIRLWDLRTGKP--------------------------- 363
Query: 531 GPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDV 590
+ L V + +S D R V + D + +W+ + GSL+ +L GHT LD
Sbjct: 364 ---LKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDF 420
Query: 591 HPFNPRIAMSAGYDGKTIVWDI 612
P +A S D +WD+
Sbjct: 421 SPDGKSLA-SGSSDNTIRLWDL 441
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 8e-20
Identities = 52/270 (19%), Positives = 90/270 (33%), Gaps = 65/270 (24%)
Query: 392 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQF 451
+ + C AF+ +G + TGS D +VW+ + + L GH V V
Sbjct: 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDL---------ETGELLRTLKGHTGPVRDVAA 59
Query: 452 SGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 511
S AD + + + S D + +W + T
Sbjct: 60 S----------ADGTY----------------LASGSSDKTIRLWDLETGECV-----RT 88
Query: 512 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD 571
H V+ + +S D R + ++ D I VW+
Sbjct: 89 LTGHTS------------------------YVSSVAFSPDGRILSSSSRDKTIKVWDVET 124
Query: 572 GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDG 631
G + +L GHT+ + P +A S+ DG +WD+ G + +
Sbjct: 125 GKCLTTLRGHTDWVNSVAFSPDGTFVA-SSSQDGTIKLWDLRTGKCVATLTGHTGEVNSV 183
Query: 632 KFSPDGASIILSDDVGQLYILNTGQGESQK 661
FSPDG ++ S G + + + G+
Sbjct: 184 AFSPDGEKLLSSSSDGTIKLWDLSTGKCLG 213
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.0 bits (206), Expect = 2e-16
Identities = 57/280 (20%), Positives = 110/280 (39%), Gaps = 30/280 (10%)
Query: 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVI-TGSDDRLVKIWSMETAYCLASCRGHEGDI 288
++ + + + GH + V F G +I +GS D +++W + T L S D
Sbjct: 185 LRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS 244
Query: 289 TDLAVSSNNALVASASNDCIIRVWRLP-DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLS 347
+ S + +L+AS S+D IR+W L + L GH+++V ++AFSP L S
Sbjct: 245 VVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK---LLAS 301
Query: 348 SSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVF 407
S DGT R+WD + + + V +F+ +G++
Sbjct: 302 GSSDGTVRLWDLETGKLLSSLTLKGHEGPV------------------SSLSFSPDGSLL 343
Query: 408 VTG-SSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSS 466
V+G S D R+W+ + + + + +S + S + L+ S
Sbjct: 344 VSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGS 403
Query: 467 KEDSTPKFKNSWFC------HDNIVTCSRDGSAIIWIPRS 500
+ + ++ + S D + +W ++
Sbjct: 404 LLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.6 bits (166), Expect = 1e-11
Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 5/133 (3%)
Query: 234 QNIKRVRGHRNAVYCAIFDRSG-RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLA 292
+ ++GH V F G V GSDD +++W + T L + GH ++ ++
Sbjct: 319 LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVS 377
Query: 293 VSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDG 352
S + +V+S S D +R+W L G + L GHT+ VT++ FSP S L S S D
Sbjct: 378 FSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKS---LASGSSDN 434
Query: 353 TCRIWDARYSQFS 365
T R+WD + S S
Sbjct: 435 TIRLWDLKTSLKS 447
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.3 bits (155), Expect = 3e-10
Identities = 57/317 (17%), Positives = 99/317 (31%), Gaps = 59/317 (18%)
Query: 344 QLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN 403
+ + S S + + SD++ S I AF+ +
Sbjct: 17 KKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPD 76
Query: 404 GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLA 463
G + ++GSSD ++W D D I L G + S LA
Sbjct: 77 GELLLSGSSDGTIKLW--------DLDNGEKLIKSLEGLHDS------------SVSKLA 116
Query: 464 DSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPM 523
SS + ++ +S DG+ +W +
Sbjct: 117 LSSPDGNSILLASSSL----------DGTVKLWDLST----------------------- 143
Query: 524 PPQPPRGGPRQRILPTPRGVNMIVWSLDNR-FVLAAIMDCRICVWNAADGSLVHSLTGHT 582
G + + V + +S D + + +D I +W+ G + +L GHT
Sbjct: 144 -----PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHT 198
Query: 583 ESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIIL 642
+ L P + S DG +WD+ G +R V FSPDG+ +
Sbjct: 199 DPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLAS 258
Query: 643 SDDVGQLYILNTGQGES 659
G + + + S
Sbjct: 259 GSSDGTIRLWDLRSSSS 275
|
Length = 466 |
| >gnl|CDD|197636 smart00297, BROMO, bromo domain | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 1e-09
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 1687 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTL 1744
P+ L I+ +LEN Y +E D +M SNA +Y G ++++ K+L + L
Sbjct: 47 PMDLKTIKKKLENGKYSSVEEFVADFNLMFSNARTYNGPDSEVYKDAKKLEKFFEKKL 104
|
Length = 107 |
| >gnl|CDD|215921 pfam00439, Bromodomain, Bromodomain | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-09
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 1679 NFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDL 1729
++ P+ L I+ +L++ Y+ L D+ ++ SNA +Y G ++D+
Sbjct: 28 DYYEVIKEPMDLSTIRQKLKSGKYKSLAEFLKDVELIFSNAITYNGEDSDI 78
|
Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 84 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 5e-08
Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 317 GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358
G + L+GHT VT++AFSP L S SDDGT R+WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSP---DGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-07
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 316 DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358
G + L+GHT VT++AFSP L S SDDGT ++WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSP---DGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|99922 cd04369, Bromodomain, Bromodomain | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 8e-07
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 1687 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTL 1744
P+ L I+ +L+N Y+ LE + D+ ++ SNA++Y G + + K+L L + L
Sbjct: 42 PMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPGSPIYKDAKKLEKLFEKLL 99
|
Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. Length = 99 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 9e-07
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 277 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312
L + +GH G +T +A S + +AS S+D I++W
Sbjct: 4 LLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-06
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 277 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312
L + +GH G +T +A S + L+AS S+D +RVW
Sbjct: 3 LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-06
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWS 271
+ +K ++GH V F G+Y+ +GSDD +K+W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 3e-06
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWS 271
+ ++ ++GH V F G + +GSDD V++W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.9 bits (115), Expect = 2e-05
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT 289
++ + +K + GH + V F GR V +GS D V++W + T L + GH +T
Sbjct: 358 LRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVT 416
Query: 290 DLAVSSNNALVASASNDCIIRVWRLPDGLPISVL 323
L S + +AS S+D IR+W L L
Sbjct: 417 SLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSF 450
|
Length = 466 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 5e-04
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 571 DGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611
G L+ +L GHT + P +A S DG +WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLA-SGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|99951 cd05520, Bromo_polybromo_III, Bromodomain, polybromo repeat III | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 7e-04
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 1687 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLV 1740
P+SL I+++L+N Y LE ++ D+ +M NA+ Y N+ + ++L L+
Sbjct: 46 PISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNVPNSRIYKDAEKLQKLM 99
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. Length = 103 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.001
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 572 GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611
G L+ +L GHT + P +A S DG VWD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLA-SGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.002
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 392 SHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ + AF+ +G + +GS D RVW+
Sbjct: 11 TGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|99950 cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfamily, specific to fungi | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 1687 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESY 1722
P++LD I+ R+E Y+ LE D +M +NA +Y
Sbjct: 46 PIALDQIKRRIEGRAYKSLEEFLEDFHLMFANARTY 81
|
SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 103 |
| >gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 11/130 (8%)
Query: 780 QSDDNDSEYNVAEEYSTEEKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRKKQKAEV 839
+ +++D E+ + EE EE S S D ++D E+GE + R K+KK+
Sbjct: 35 EEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEP-ESDDEEEGEKELQREERLKKKKRVKTK 93
Query: 840 EIMTSSGRRVKRRILDESEGNAAFG----------NKRTRKSGNRQKSSRRKSSTSKSLR 889
+ ++ K+ AA T R+KSSR + +K
Sbjct: 94 AYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISWAPTLLDSPRRKSSRSSTVQNKEAT 153
Query: 890 PQRAAARNAR 899
+R R R
Sbjct: 154 HERLKEREIR 163
|
The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.002
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 14/126 (11%)
Query: 282 RGHEGDITDLAVSS-NNALVASASNDCIIRVWRLPDG--------LPISVLRGHTAAVTA 332
+GH I DL + + ++AS S D IRVW +P P +L+GH ++
Sbjct: 71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISI 130
Query: 333 IAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVA---GRNMAPSSSAG 389
I ++P + Y + SS D IWD + + +I +P+ ++ N+ + G
Sbjct: 131 IDWNPM--NYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVG 188
Query: 390 PQSHQI 395
H I
Sbjct: 189 KHMHII 194
|
Length = 568 |
| >gnl|CDD|99955 cd05525, Bromo_ASH1, Bromodomain; ASH1_like sub-family | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.002
Identities = 18/70 (25%), Positives = 32/70 (45%)
Query: 1670 KLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDL 1729
L + ++ R P+ L I+ ++ YY+ EA D+ + NAE Y+GR + +
Sbjct: 31 NLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAEKYYGRKSPI 90
Query: 1730 STKIKRLSDL 1739
+ RL
Sbjct: 91 GRDVCRLRKA 100
|
ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 106 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1757 | |||
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.98 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.98 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.98 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.97 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.97 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.97 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.97 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.97 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.97 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.97 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.97 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.97 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.97 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.96 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.96 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.96 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.96 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.96 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.96 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.96 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.96 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.96 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.95 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.95 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.95 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.95 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.94 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.94 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.94 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.94 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.94 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.94 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.94 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.93 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.93 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.93 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.93 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.93 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.93 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.93 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.92 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.92 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.92 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.92 | |
| PTZ00421 | 493 | coronin; Provisional | 99.92 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.92 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.92 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.91 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.91 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.91 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.91 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.91 | |
| PTZ00420 | 568 | coronin; Provisional | 99.91 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.9 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.9 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.9 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.9 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.9 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.9 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.9 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.9 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.9 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.9 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.9 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.89 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.89 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.89 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.89 | |
| PTZ00421 | 493 | coronin; Provisional | 99.88 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.88 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.88 | |
| PF06507 | 83 | Auxin_resp: Auxin response factor; InterPro: IPR01 | 99.88 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| PTZ00420 | 568 | coronin; Provisional | 99.87 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.87 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.87 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.86 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.86 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.85 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.85 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.85 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.84 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.84 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.84 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.84 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.84 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.84 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.84 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.84 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.83 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.83 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.83 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.83 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.83 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.82 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.82 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.81 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.8 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.8 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.8 | |
| cd05529 | 128 | Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like | 99.79 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.79 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.78 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.78 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.78 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.77 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.77 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.77 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.76 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.76 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.76 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.76 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.75 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.73 | |
| cd05497 | 107 | Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily | 99.73 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.72 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.72 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.71 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.71 | |
| cd05495 | 108 | Bromo_cbp_like Bromodomain, cbp_like subfamily. Cb | 99.7 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.7 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.7 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.7 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.7 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.69 | |
| cd05504 | 115 | Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_li | 99.69 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.69 | |
| cd05505 | 97 | Bromo_WSTF_like Bromodomain; Williams syndrome tra | 99.68 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.68 | |
| cd05508 | 99 | Bromo_RACK7 Bromodomain, RACK7_like subfamily. RAC | 99.68 | |
| cd05507 | 104 | Bromo_brd8_like Bromodomain, brd8_like subgroup. I | 99.68 | |
| cd05496 | 119 | Bromo_WDR9_II Bromodomain; WDR9 repeat II_like sub | 99.67 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.67 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.67 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.66 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.66 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.66 | |
| cd05510 | 112 | Bromo_SPT7_like Bromodomain; SPT7_like subfamily. | 99.66 | |
| cd05509 | 101 | Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. | 99.65 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.65 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.63 | |
| cd05516 | 107 | Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, s | 99.62 | |
| cd05502 | 109 | Bromo_tif1_like Bromodomain; tif1_like subfamily. | 99.62 | |
| cd05511 | 112 | Bromo_TFIID Bromodomain, TFIID-like subfamily. Hum | 99.62 | |
| cd05503 | 97 | Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like s | 99.62 | |
| cd05500 | 103 | Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfami | 99.62 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.62 | |
| cd05520 | 103 | Bromo_polybromo_III Bromodomain, polybromo repeat | 99.61 | |
| cd05513 | 98 | Bromo_brd7_like Bromodomain, brd7_like subgroup. T | 99.61 | |
| cd05517 | 103 | Bromo_polybromo_II Bromodomain, polybromo repeat I | 99.61 | |
| cd05501 | 102 | Bromo_SP100C_like Bromodomain, SP100C_like subfami | 99.6 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.6 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.6 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.6 | |
| cd05515 | 105 | Bromo_polybromo_V Bromodomain, polybromo repeat V. | 99.6 | |
| cd05528 | 112 | Bromo_AAA Bromodomain; sub-family co-occurring wit | 99.59 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.59 | |
| cd05512 | 98 | Bromo_brd1_like Bromodomain; brd1_like subfamily. | 99.59 | |
| KOG1474 | 640 | consensus Transcription initiation factor TFIID, s | 99.58 | |
| cd05499 | 102 | Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfam | 99.58 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.58 | |
| cd05518 | 103 | Bromo_polybromo_IV Bromodomain, polybromo repeat I | 99.58 | |
| smart00297 | 107 | BROMO bromo domain. | 99.58 | |
| cd05524 | 113 | Bromo_polybromo_I Bromodomain, polybromo repeat I. | 99.57 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.57 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.57 | |
| cd05519 | 103 | Bromo_SNF2 Bromodomain, SNF2-like subfamily, speci | 99.56 | |
| cd05525 | 106 | Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 | 99.55 | |
| cd05521 | 106 | Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_lik | 99.55 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.55 | |
| cd05506 | 99 | Bromo_plant1 Bromodomain, uncharacterized subfamil | 99.54 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.54 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.54 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.53 | |
| cd05498 | 102 | Bromo_Brdt_II_like Bromodomain, Brdt_like subfamil | 99.53 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.53 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.53 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.5 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.49 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.49 | |
| cd05522 | 104 | Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_l | 99.49 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.49 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.48 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.48 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.48 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.46 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.46 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.45 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.45 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.44 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.43 | |
| cd05492 | 109 | Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family | 99.42 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.41 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.41 | |
| PF00439 | 84 | Bromodomain: Bromodomain; InterPro: IPR001487 Brom | 99.41 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.39 | |
| cd04369 | 99 | Bromodomain Bromodomain. Bromodomains are found in | 99.38 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.36 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.34 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.33 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.33 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.32 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.32 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.3 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.3 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.3 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.29 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.28 | |
| cd05526 | 110 | Bromo_polybromo_VI Bromodomain, polybromo repeat V | 99.28 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.27 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.26 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.26 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.25 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.24 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.23 | |
| COG5076 | 371 | Transcription factor involved in chromatin remodel | 99.23 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.22 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.21 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.21 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.21 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.2 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.17 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.17 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.15 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.12 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.12 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.11 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.11 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.1 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.08 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.08 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.08 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.07 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.06 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.05 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.03 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.02 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.02 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.01 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.0 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.99 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.98 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.96 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.95 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.95 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.94 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.93 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.93 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.93 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.92 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.92 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.9 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.89 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.89 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.88 | |
| KOG1245 | 1404 | consensus Chromatin remodeling complex WSTF-ISWI, | 98.87 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.86 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.86 | |
| cd05491 | 119 | Bromo_TBP7_like Bromodomain; TBP7_like subfamily, | 98.83 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.8 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.8 | |
| KOG1472 | 720 | consensus Histone acetyltransferase SAGA/ADA, cata | 98.79 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.77 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.76 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.72 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.72 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.7 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.68 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.6 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.58 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.52 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.5 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.48 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.45 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.43 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.42 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.34 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.34 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.3 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.28 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.27 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.25 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.24 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.22 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.22 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.22 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.22 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.22 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.21 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.19 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.15 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.14 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.13 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.08 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.07 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.05 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.05 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.04 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.01 | |
| KOG1827 | 629 | consensus Chromatin remodeling complex RSC, subuni | 98.01 | |
| KOG1474 | 640 | consensus Transcription initiation factor TFIID, s | 97.98 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.98 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.97 | |
| KOG0008 | 1563 | consensus Transcription initiation factor TFIID, s | 97.96 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.91 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.9 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.88 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.86 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.85 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.84 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.84 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.83 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 97.78 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.77 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.74 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.73 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.73 | |
| cd05494 | 114 | Bromodomain_1 Bromodomain; uncharacterized subfami | 97.73 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.73 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.71 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.69 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.64 | |
| KOG0955 | 1051 | consensus PHD finger protein BR140/LIN-49 [General | 97.6 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.59 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.53 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.52 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.51 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.5 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.49 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.47 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.44 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.39 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.35 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.34 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.3 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.24 | |
| KOG1472 | 720 | consensus Histone acetyltransferase SAGA/ADA, cata | 97.17 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.11 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.06 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 96.94 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.91 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.9 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.87 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.83 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.82 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.75 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.73 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.66 | |
| KOG0008 | 1563 | consensus Transcription initiation factor TFIID, s | 96.62 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.61 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.55 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 96.49 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.49 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.41 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.37 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.3 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.22 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.16 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.07 | |
| KOG1828 | 418 | consensus IRF-2-binding protein CELTIX-1, contains | 96.05 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.04 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 96.02 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.0 | |
| KOG1828 | 418 | consensus IRF-2-binding protein CELTIX-1, contains | 95.96 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 95.82 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 95.69 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 95.56 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 95.49 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 95.49 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.45 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 95.44 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 95.42 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 95.36 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 95.33 | |
| PRK10115 | 686 | protease 2; Provisional | 95.24 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 94.96 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 94.83 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 94.76 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 94.48 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 94.45 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 94.42 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 94.39 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 94.24 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 94.13 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 94.06 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 93.78 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 93.65 | |
| COG5076 | 371 | Transcription factor involved in chromatin remodel | 93.63 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 93.53 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 93.45 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 93.43 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 93.38 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 93.33 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 93.31 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 92.9 | |
| PRK10115 | 686 | protease 2; Provisional | 92.89 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 92.83 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 92.5 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 92.44 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 92.14 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 92.13 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 91.95 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 91.54 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 91.51 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 90.97 | |
| cd05493 | 131 | Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL- | 90.96 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 90.37 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 90.14 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 89.82 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 89.62 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 89.46 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 89.08 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 88.88 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 88.37 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 87.83 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 87.65 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 87.4 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 87.39 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 87.22 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 87.09 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 86.94 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 86.79 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 86.56 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 86.01 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 84.6 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 83.92 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 83.9 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 83.23 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 83.03 | |
| PF08513 | 27 | LisH: LisH; InterPro: IPR013720 The LisH motif is | 82.89 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 81.99 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 81.77 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 80.58 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 80.01 |
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-139 Score=1253.20 Aligned_cols=1094 Identities=53% Similarity=0.830 Sum_probs=836.1
Q ss_pred cchhHHHHHHHHHhccCCchhhHHHHHHHHHhhccCchhHHHHHhhcCCCCCCCCCcccccchhHhhhhhhCCCCChHHH
Q 000268 47 VDLREVYFLIMHFLSTGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPHIEKDHL 126 (1757)
Q Consensus 47 ~~~~elyflI~~fL~~gp~~~~a~~L~~el~~~~~Lp~r~~~WlE~lsl~~~~~~~~G~~~~~~~~~L~~~~~~i~~~~L 126 (1757)
+|++|+||||.|||+.|||++++++|..|++++++||.|++.| .+..+....+.|+..|+||.++||
T Consensus 13 l~lsevyflil~~lS~gPcert~~vl~~elee~~ll~pr~~~W-------------~sn~~~dd~eslvls~~hI~kdhl 79 (1113)
T KOG0644|consen 13 LDLSEVYFLILHYLSAGPCERTAQVLRQELEEYSLLPPRYHDW-------------ESNSGNDDGESLVLSYKHIAKDHL 79 (1113)
T ss_pred cchhhHHHHHHhhcccCchhhcchhhhhhhhhhhccCcccccc-------------ccCCCCcccceeeccccccchHHH
Confidence 8899999999999999999999999999999999999999999 455555677778888999999999
Q ss_pred HHHHHHHHHccCCCCccccCCCCCC---CcchhhhhccCcccccccccccCCCCCCCCCCCCCCCCcccccccccccccc
Q 000268 127 VKLLKQLIINTSSPSRAMIGGDAPN---AADVPTLLGRGSFSLLSYDRDKGQNEIDHPPAHMRWPHMYADQVRGLGLREI 203 (1757)
Q Consensus 127 l~ll~r~i~~~~~~~~~~~~~~~p~---~~~v~tLLg~~~~Sll~s~~~~~~~~~~~p~~~~r~p~~~~~~V~~l~~r~~ 203 (1757)
|++|++|+.. ...+.+|. ++.+++|||+|+|+|++..+..... ..++.+++||+||+++|+++.++..
T Consensus 80 l~i~kqlv~~-------~d~~~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~--~~~~s~~~~~h~~~~~~~~~sl~s~ 150 (1113)
T KOG0644|consen 80 LQILKQLVPM-------LDKPIPPRYCTIARVPTLLGTGRQSLLRRAKDIRHT--VWKGSAFRWPHMHADQVRGVSLRSI 150 (1113)
T ss_pred HHHHHHhccC-------cCCCCCcceeeeecccchhcchhHHHHhhhhhcccc--cccccccccccccCcccccceeccC
Confidence 9999999752 23445666 7899999999999999998876654 4455789999999999999999999
Q ss_pred CCccccccCCcchhhhccccccCccccccceeEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEec
Q 000268 204 GGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRG 283 (1757)
Q Consensus 204 Gg~~~~~~~~~~l~s~~~~~a~~~~~~~~~k~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~g 283 (1757)
||+|..|++.+++..+++.++.|..++++++.++.|.||.++|+|++|+..|++++||++|..|+||.++++.++.+++|
T Consensus 151 ~~~~~~h~~a~~i~~at~~~akPgtmvqkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rG 230 (1113)
T KOG0644|consen 151 GGGFEIHHRAPSIGCATFSIAKPGTMVQKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRG 230 (1113)
T ss_pred CcchhhhhcCcccccceeeecCcHHHHHHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCC
Q 000268 284 HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ 363 (1757)
Q Consensus 284 H~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~ 363 (1757)
|.+.|+.++.+.++.++|+++.|..|+||.+.+|.++..+.+|++.|++|+|+|- .+.+.||++++||.+
T Consensus 231 hs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~-------~sss~dgt~~~wd~r--- 300 (1113)
T KOG0644|consen 231 HSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPR-------ASSSDDGTCRIWDAR--- 300 (1113)
T ss_pred CccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCcc-------ccCCCCCceEecccc---
Confidence 9999999999999999999999999999999999999999999999999999995 368899999999987
Q ss_pred ccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCC
Q 000268 364 FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE 443 (1757)
Q Consensus 364 ~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~ 443 (1757)
+...++.+.+.... ....+.++-|..++.-+++|+.|+.-..|.+.. +..+.
T Consensus 301 ~~~~~y~prp~~~~-------------~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~---------------l~~~~ 352 (1113)
T KOG0644|consen 301 LEPRIYVPRPLKFT-------------EKDLVDSILFENNGDRFLTGSRDGEARNHEFEQ---------------LAWRS 352 (1113)
T ss_pred ccccccCCCCCCcc-------------cccceeeeeccccccccccccCCcccccchhhH---------------hhhhc
Confidence 34444444443221 224455666666777777777777666665421 11111
Q ss_pred CCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCC
Q 000268 444 NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPM 523 (1757)
Q Consensus 444 ~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~ 523 (1757)
..+ .+++++.|
T Consensus 353 ~~l------------------------------------if~t~ssd--------------------------------- 363 (1113)
T KOG0644|consen 353 NLL------------------------------------IFVTRSSD--------------------------------- 363 (1113)
T ss_pred cce------------------------------------EEEecccc---------------------------------
Confidence 100 11111110
Q ss_pred CCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeC
Q 000268 524 PPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGY 603 (1757)
Q Consensus 524 ~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~ 603 (1757)
-..+.+++-.+..+++|++.+|.+++.+.+|...++.|.+||++.++..+++.
T Consensus 364 ---------------------------~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~ 416 (1113)
T KOG0644|consen 364 ---------------------------LSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGY 416 (1113)
T ss_pred ---------------------------ccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccC
Confidence 01355667778889999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCccccccccceeecCCCccEEEccCCc
Q 000268 604 DGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGN 683 (1757)
Q Consensus 604 DG~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~tGe~~~~~~~~~~fs~D~r~Li~d~~g~ 683 (1757)
||.+.|||+..|.+++.+..+++.+.+.+||+||+.++..++.|+++|+.++.|+..+..++++||..||+||+.+.+|+
T Consensus 417 dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k~ak~dqffl~dyrplirdTn~~ 496 (1113)
T KOG0644|consen 417 DGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQKKAKYDQFFLGDYRPLIRDTNGY 496 (1113)
T ss_pred CCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCccccccccceEeecCcccccccccch
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccccccCcCCCCCcccCCCCCCCCCcchhhhhcccccccceEECCCCCeEEEeeCCCCCCceEeeccCCcccccCC
Q 000268 684 VLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDP 763 (1757)
Q Consensus 684 vlD~~tql~phl~~l~~~L~D~~~~p~p~~~Q~l~~~r~~~v~~lAfSPDG~~LAvg~d~s~~~~v~l~~l~~~~~l~~p 763 (1757)
|+|++||+.|| +.++++|||.+++||+.++|.++++|++++. +.++.|
T Consensus 497 vldqeTq~~ph-~~~p~~l~ds~~iphpe~yqtl~q~rr~sa~-------------------------------dh~mp~ 544 (1113)
T KOG0644|consen 497 VLDQETQLAPH-RNPPDFLCDSDMIPHPEPYQTLFQGRRLSAL-------------------------------DHLMPP 544 (1113)
T ss_pred hhhhHhhhccc-cCCCCceeccCCCcCCchhhhcccccccchh-------------------------------hhcCCc
Confidence 99999999999 6679999999999999999999998875543 122233
Q ss_pred CccccceeeeCCCCCcccCCCCCcccccccCCccccCCCCCCCCCCCCCCCCCccCCCCCCcchhHHHHHHhhhhhhccc
Q 000268 764 LPEFIDVMDWEPENEVQSDDNDSEYNVAEEYSTEEKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRKKQKAEVEIMT 843 (1757)
Q Consensus 764 lp~~i~~~~~sPDg~~ls~~~~s~~~~~~~~~s~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (1757)
+ +++..|.|.|+..+++++.+++|+...++ +
T Consensus 545 l-~fia~~~~E~e~~Vls~~nds~~~~~~es------------~------------------------------------ 575 (1113)
T KOG0644|consen 545 L-EFIATMDWEPEEQVLSDQNDSEYNRSPES------------L------------------------------------ 575 (1113)
T ss_pred c-cchhhhccccchhhhhhcccccccCCccc------------c------------------------------------
Confidence 3 77999999999999999999887653220 0
Q ss_pred cccccccccccccccCccccCCcccccccccccccccccCCCCCCChhHHHHHHHhHHhhhhcCcCCCCCCCCCCCCCCC
Q 000268 844 SSGRRVKRRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRPQRAAARNARSFFSKITGASTDGEDVDGSEGELS 923 (1757)
Q Consensus 844 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 923 (1757)
.+.++. ...-++.++.+-+.+.+++|++++|+++|+|+++|||+..|++|++++-+.+. +
T Consensus 576 -----------seldg~-isq~krt~n~r~g~k~s~~~hg~s~ss~~~R~~~Rn~~~~isk~sg~~~~~~s--------g 635 (1113)
T KOG0644|consen 576 -----------SELDGM-ISQLKRTQNQRMGAKQSKRKHGLSKSSRPPRAAARNASSDISKISGISLDRKS--------G 635 (1113)
T ss_pred -----------hhhhhh-hhhhhhhhccccccchhhccCCCCccccCCcccccccchhhccCCCccccccc--------c
Confidence 222232 33334455667788889999999999999999999999999999888776543 2
Q ss_pred CccccccccccccccccccchHHhhhcccCcccccccccccCCCCCcccccccCcceEEEEeeccccCcccccccccccc
Q 000268 924 ESESDLQDSYIESEESGRSLLNEQRKHSKGKGISLDDSEDVTKLDTPESHVNAGIRRLVLKLPVRDSNKHELQERTSDKC 1003 (1757)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1003 (1757)
+.+...|+.... +.+..+++.|...-| .++++.
T Consensus 636 ~~e~~~q~~~~~------------------------------p~eq~~~~~~~~~wR--~e~~vc--------------- 668 (1113)
T KOG0644|consen 636 QVEGVTQMHQNA------------------------------PSEQIATLRTLQAWR--REVVVC--------------- 668 (1113)
T ss_pred CCccchhhccCC------------------------------CHHHHhhhhHHHHhh--cccCcc---------------
Confidence 222222222111 111111111000000 000000
Q ss_pred cccccccccCcccccccccCCCCcccccCCCCCCCCcccccccccCCCccccccccccccCcccCCceeecceecccccc
Q 000268 1004 NQLVSVIGTSSEAHQEATEGNGNRVSYVGNNCSSVDANCGLMERRGRGQFDKLEDYLNLSNGYKDGKIRWGGVRARSSKR 1083 (1757)
Q Consensus 1004 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1083 (1757)
T Consensus 669 -------------------------------------------------------------------------------- 668 (1113)
T KOG0644|consen 669 -------------------------------------------------------------------------------- 668 (1113)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCcccCCCCCCcccCccccccccccCCCCCCCCCCCCCccccccccCCCCCCCcccccccccCCCCCcccCCCcc
Q 000268 1084 LKIGEMMPLDANNGSGIHLDDDKEKESEVNGHVKPEKDGIDISCGEEITNCGDNTDEVPLKNVKNLSGENNDVYSGDASC 1163 (1757)
Q Consensus 1084 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1163 (1757)
....+++|... +.. .. ++. ++++ . ++
T Consensus 669 -----e~legt~pe~e-------------------d~~-~~----~dt------------dev~------r-----ng-- 694 (1113)
T KOG0644|consen 669 -----EELEGTFPELE-------------------DEA-MA----VDT------------DEVE------R-----NG-- 694 (1113)
T ss_pred -----ccccccCcccc-------------------ccc-cc----ccc------------chhh------h-----cC--
Confidence 00000000000 000 00 000 0000 0 00
Q ss_pred cccccCCcccccCCCCccccCCCCCCCCCCCCCCCCCCCCcccccccCCceeeeeeeccccccCccccCCCCCcccccCC
Q 000268 1164 KEQQSGFSELNYYDESKCVNTTDEDTTPYPNHLQNGTIQPSELKEILTPVSTKLRIRSKRILRDADVENQNNGCDALHGS 1243 (1757)
Q Consensus 1164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1243 (1757)
-.++ -..|.+-+-+..+-...++...+ + |.+++....+.|+ .
T Consensus 695 ----~kng----------RKrk~~l~~~~Snksd~vtlV~~--d---------~~~~~~~~s~aP~-------------~ 736 (1113)
T KOG0644|consen 695 ----YKNG----------RKRKLELRHPLSNKSDSVTLVSQ--D---------LADQSTCVSRAPN-------------G 736 (1113)
T ss_pred ----CCcc----------cccchhccCccccccccchhhhh--h---------hhcccceeeeCCc-------------c
Confidence 0000 00000111111111111111100 0 0111121111111 1
Q ss_pred CCCCCCCCCCcccccCCCCCccCCCCCCCcccccccccccCCCCCCCCCCccCCCCCCCCCCCccchhhhhhhccccccc
Q 000268 1244 SLDIKPNSLPEVLESDGTNRTSSDRGADGSQRLNAQIDSTSEHDPLGSHSHSHDPLGSHSHSHSRKMFNVVYRRSKTNRD 1323 (1757)
Q Consensus 1244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1323 (1757)
.|+ .+-++|- .++.+ ...|..+. .....++--.+-||+.++..
T Consensus 737 ~ld---------------------~lNDgfs-------------D~kiD-~t~D~se~--~gs~~Eis~Rndrr~eS~~~ 779 (1113)
T KOG0644|consen 737 GLD---------------------SLNDGFS-------------DVKID-LTLDCSED--SGSGEEISLRNDRRSESNPE 779 (1113)
T ss_pred ccc---------------------ccccccc-------------ccccc-chhhhhhc--CCcccceeeecchhhccCcc
Confidence 110 0001110 11111 33333333 33444455556667766655
Q ss_pred CCCCCCCCCCCCCccccCCCCCCCCCCCCCcccccccccee-eccCCCccccccccccCCCCcccccCCCcCCCCCCCCc
Q 000268 1324 RTNSEGDGGGVGESTLNANNNNFHESATDGSRRTRSMGLKT-TTCDPDNVSSNLRLEQHNQPEDMYSGHNRSTSRCQLPH 1402 (1757)
Q Consensus 1324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1402 (1757)
.....+.+ + .+.++.+++.. +.++. ..+.+..+..+.|+.
T Consensus 780 esds~SSa----------~-----------sv~l~dgsi~~~tsrrg------------------Ri~k~~~st~a~Lt~ 820 (1113)
T KOG0644|consen 780 ESDSLSSA----------Y-----------SVWLADGSINLQTSRRG------------------RITKFCSSTEAELTT 820 (1113)
T ss_pred cccchhhh----------h-----------heecccCCccccccccc------------------cccccCccchhhhhh
Confidence 53322211 1 23344444443 22222 234555566666776
Q ss_pred --ccccCCCcccccccccccccccccccCCCCcccccccccccccccceecccCCCCCCCCCCCCEEEEecccchhhhhh
Q 000268 1403 --EEWGSSSKMTVGLRSTRNRRTSYLFCDSSPIDRRKTHQSLRKGSWLMLSTHEEGSRYIPQLGDEVVYLRQGHQEYINY 1480 (1757)
Q Consensus 1403 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wl~~~~~~~~~~YvPq~Gd~VvYf~QGH~e~~~~ 1480 (1757)
++|..+.+. +.+.|++. +....+....++++++.+.+||++++||+++||||||||+|+||||||+|||++
T Consensus 821 e~~~~p~~~~~-----~s~s~s~~--~~~p~~~~~~~~~~~~~~~sWltls~hee~~ryipQmgDEViyfrQghqeyl~~ 893 (1113)
T KOG0644|consen 821 ELSSPPCSQDK-----GSGSKSHK--RSTPAPLENMKPQQLFEKPSWLTLSIHEEGCRYIPQMGDEVIYFRQGHQEYLEA 893 (1113)
T ss_pred cccCCCccccc-----cccccCcc--cCCCccccccchhhhcCCceeEEeehhhcCCcccccccceeehhhhhhHHHHhh
Confidence 668877777 55666665 444445556666799999999999999999999999999999999999999999
Q ss_pred cCCCCCCCccccCC-CCCceeeEEEEeeeEEecCCCCceeEEEEeeeecCCCCCCCceEEEEcCCCCCCCceEeehhhHH
Q 000268 1481 SGSREVGPWITVKG-NIRAVEFCKVESLEYATASGSGDSCCKMTLKFIDPTSSVSNMTFRLTLPEVTGFPDFLVERTRFD 1559 (1757)
Q Consensus 1481 ~~~~~~~~~~~~~~-~l~~~~~c~V~~i~y~~~~~~~~~~~~~~L~~~~~~~~~~~~~F~v~y~~~~~~~dFiV~~~~y~ 1559 (1757)
+..... +|..+.+ ++-+++.|+|+.|.|...++++++||+|+|+++||.+..+.++|+++|+++.++|||||++++|+
T Consensus 894 ~~~n~~-~~~~~~p~~~~~v~~~kv~kl~~~~y~~~~~s~c~m~l~~idp~s~~~~k~F~ltlpdlv~fpDFlV~rsrYd 972 (1113)
T KOG0644|consen 894 VRLNNI-ELNNKEPWNKMAVEICKVEKLVYITYPGSGDSCCKMKLAVIDPASKLMDKSFKLTLPDLVTFPDFLVERSRYD 972 (1113)
T ss_pred hhhccc-cccccCcccccchhhheeeeeeeeeccCCCcchheeeeeeecchhhhhhccceeecccccCcchhhhhhhhHH
Confidence 887765 5544333 68899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCccCceeEEeecCCCCCCCceEEEEEEEecCCCCCCCCCCCceeEEEEcCCCCcccccCcCcccCCCCCCCCCC
Q 000268 1560 AAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFDSDTQWEQPR 1639 (1757)
Q Consensus 1560 ~a~~~~w~~g~rf~m~fe~e~~~~~~~~~GtI~~~~~~~p~~p~S~W~~l~V~Wd~~~~~~~rvSPWEiep~~~~~~~p~ 1639 (1757)
+|++|||++|+|||+||.++...+|.||+|+|.++++.+|+||+|||+||.|+||++ |.+.|||||++|++..
T Consensus 973 ~AiQrnW~~~d~crvwwrda~~e~g~WWeG~ils~~pksp~fpdSpwery~v~~~~~--e~~~~spwe~~~i~de----- 1045 (1113)
T KOG0644|consen 973 AAIQRNWTCRDKCRVWWRDAGEEDGAWWEGRILSVKPKSPDFPDSPWERYIVRYDNT--ETELHSPWEMEPIPDE----- 1045 (1113)
T ss_pred HHHhhccccccceeEEEccCCCcCCceeeeeeeeccCCCCCCCCCcceeEEEEecCC--cccccCccccCCCccc-----
Confidence 999999999999999999999999999999999999999999999999999999986 8899999999877621
Q ss_pred CChhhHHHHHHHHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhh
Q 000268 1640 IDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNA 1719 (1757)
Q Consensus 1640 ~~~~~r~kLls~l~kle~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na 1719 (1757)
|.+.+|+|+.|+.|+.||||+|||+.++|.+||..|++||
T Consensus 1046 ----------------------------------------~~~~fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsna 1085 (1113)
T KOG0644|consen 1046 ----------------------------------------VDNRFPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNA 1085 (1113)
T ss_pred ----------------------------------------cCCCCCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhccc
Confidence 8889999999999999999999999999999999999999
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHHHHhCC
Q 000268 1720 ESYFGRNTDLSTKIKRLSDLVTRTLSSL 1747 (1757)
Q Consensus 1720 ~~fn~~~s~i~~~a~~l~~~~~~~l~~~ 1747 (1757)
++|++.+..+..+|..|..||++.|.++
T Consensus 1086 e~~fg~~~~~~~ki~~l~~~~~~Tlpk~ 1113 (1113)
T KOG0644|consen 1086 ETFFGRNKNVAIKISFLSPWFDRTLPKL 1113 (1113)
T ss_pred ceeecccccHHHHhhhcchhhhhhccCC
Confidence 9999999999999999999999998764
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-47 Score=428.01 Aligned_cols=361 Identities=25% Similarity=0.432 Sum_probs=310.5
Q ss_pred eeEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEE
Q 000268 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1757)
Q Consensus 234 k~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWD 313 (1757)
.+-..+.||.++|.|++|+|+|.+||||+.|.++++||+.|..+++++++|...|.|++|+|||+.||+|+.||+|++||
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCce-EEecCCCCceEEEEecCCC--CceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCC
Q 000268 314 LPDGLPI-SVLRGHTAAVTAIAFSPRP--GSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGP 390 (1757)
Q Consensus 314 l~tg~~l-~~l~gH~~~VtsLafSPdg--~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~ 390 (1757)
..+|+++ ..|.+|...|++++|.|-. ....+|++++.||.|+|||+..+.++..+ .+
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l--------------------sg 245 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL--------------------SG 245 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe--------------------cc
Confidence 9998665 6789999999999998742 11248999999999999999988776655 36
Q ss_pred CCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCC
Q 000268 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDS 470 (1757)
Q Consensus 391 ~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~ 470 (1757)
|...|+|+.|--+| +|++|+.|++|++|+... +.....+.+|...|+.++.+.+................
T Consensus 246 HT~~VTCvrwGG~g-liySgS~DrtIkvw~a~d---------G~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~ 315 (480)
T KOG0271|consen 246 HTASVTCVRWGGEG-LIYSGSQDRTIKVWRALD---------GKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPK 315 (480)
T ss_pred CccceEEEEEcCCc-eEEecCCCceEEEEEccc---------hhHHHhhcccchheeeeeccchhhhhccccccccccCC
Confidence 89999999997555 899999999999999854 55788899999999999998653211111111000000
Q ss_pred CC---------ccc-ccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCC
Q 000268 471 TP---------KFK-NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP 540 (1757)
Q Consensus 471 ~~---------~~~-~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~ 540 (1757)
.. +.. ..-..+..+|+|+.|+++.+|+... ...++.+..+|.
T Consensus 316 ~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~----------------------------~kkpi~rmtgHq 367 (480)
T KOG0271|consen 316 SFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFK----------------------------SKKPITRMTGHQ 367 (480)
T ss_pred ChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccc----------------------------cccchhhhhchh
Confidence 00 000 0012346899999999999998763 234667788999
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEE
Q 000268 541 RGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRI 620 (1757)
Q Consensus 541 ~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~ 620 (1757)
.-|+.+.||||+++||+++.|..|++|+..+|+.+.+|+||-+.|+.++|+. +.++|++|+.|.+++||++.+.++..-
T Consensus 368 ~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~D 446 (480)
T KOG0271|consen 368 ALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQD 446 (480)
T ss_pred hheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEEEEEeeeeeeccc
Confidence 9999999999999999999999999999999999999999999999999999 889999999999999999999999999
Q ss_pred EeecCcceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000268 621 YEISRFRLVDGKFSPDGASIILSDDVGQLYILN 653 (1757)
Q Consensus 621 l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWd 653 (1757)
+.+|...|.++.|+|||+.+++|+.|..+++|.
T Consensus 447 LpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 447 LPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=383.55 Aligned_cols=332 Identities=21% Similarity=0.363 Sum_probs=287.5
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEE
Q 000268 276 YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355 (1757)
Q Consensus 276 ~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIr 355 (1757)
++...+.||.+.|.|++|+|+|..||+|+.|.++|+||+.+..++.+.++|...|.|++|+||++ .|++|+.||+|+
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk---~iASG~~dg~I~ 182 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGK---KIASGSKDGSIR 182 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcc---hhhccccCCeEE
Confidence 45556789999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred EEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECC-----CCCEEEEeeCCceEEEecCCCCCCCCCC
Q 000268 356 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-----NGTVFVTGSSDTLARVWNACKPNTDDSD 430 (1757)
Q Consensus 356 IWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSp-----dG~~LasGs~DG~IrVWDl~t~~~~~s~ 430 (1757)
+||..+|++... .+.+|...|++++|.| ..++||+++.||.|+|||+..
T Consensus 183 lwdpktg~~~g~-------------------~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~------- 236 (480)
T KOG0271|consen 183 LWDPKTGQQIGR-------------------ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL------- 236 (480)
T ss_pred EecCCCCCcccc-------------------cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC-------
Confidence 999999875543 2457899999999976 567999999999999999954
Q ss_pred CCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccc
Q 000268 431 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510 (1757)
Q Consensus 431 ~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w 510 (1757)
+..+..+.+|+..|+|+.|-..+ +|++|+.|++|++|+...+.
T Consensus 237 --~~~~~~lsgHT~~VTCvrwGG~g---------------------------liySgS~DrtIkvw~a~dG~-------- 279 (480)
T KOG0271|consen 237 --GTCVRTLSGHTASVTCVRWGGEG---------------------------LIYSGSQDRTIKVWRALDGK-------- 279 (480)
T ss_pred --ceEEEEeccCccceEEEEEcCCc---------------------------eEEecCCCceEEEEEccchh--------
Confidence 56788999999999999998764 99999999999999988643
Q ss_pred cccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEc-----------C-------------------------CCCE
Q 000268 511 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWS-----------L-------------------------DNRF 554 (1757)
Q Consensus 511 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafS-----------P-------------------------DG~~ 554 (1757)
.+..+.+|...|+.++.| | .+..
T Consensus 280 ---------------------~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~er 338 (480)
T KOG0271|consen 280 ---------------------LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGER 338 (480)
T ss_pred ---------------------HHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcce
Confidence 233344455555555444 1 2356
Q ss_pred EEEEecCCeEEEEECCC-CceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCcceEEEEE
Q 000268 555 VLAAIMDCRICVWNAAD-GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKF 633 (1757)
Q Consensus 555 LaSGs~DG~I~IWDl~t-gkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~Vtslaf 633 (1757)
|++|+.|+++.+|+... .+++..+.||...|+.+.||| +++++|+++.|..|++|+..+|+.+.+|.+|-..|..++|
T Consensus 339 lVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaw 417 (480)
T KOG0271|consen 339 LVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAW 417 (480)
T ss_pred eEEecCCceEEEecccccccchhhhhchhhheeeEEECC-CccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEe
Confidence 99999999999999754 458889999999999999999 8899999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCccccccccceeecCCCccEEEccCCceeecccccccCcCCCCCcccCCCCCCCCCc
Q 000268 634 SPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEP 713 (1757)
Q Consensus 634 SPDGk~LAsgs~DG~I~IWdl~tGe~~~~~~~~~~fs~D~r~Li~d~~g~vlD~~tql~phl~~l~~~L~D~~~~p~p~~ 713 (1757)
|.|.++|++|+.|.+|+||++.+-+...+
T Consensus 418 saDsRLlVS~SkDsTLKvw~V~tkKl~~D--------------------------------------------------- 446 (480)
T KOG0271|consen 418 SADSRLLVSGSKDSTLKVWDVRTKKLKQD--------------------------------------------------- 446 (480)
T ss_pred ccCccEEEEcCCCceEEEEEeeeeeeccc---------------------------------------------------
Confidence 99999999999999999999976433221
Q ss_pred chhhhhcccccccceEECCCCCeEEEeeCCCCCCceEeec
Q 000268 714 YQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQP 753 (1757)
Q Consensus 714 ~Q~l~~~r~~~v~~lAfSPDG~~LAvg~d~s~~~~v~l~~ 753 (1757)
.|||...|.++.|||||..+|.| ..+..+++|.
T Consensus 447 ----LpGh~DEVf~vDwspDG~rV~sg---gkdkv~~lw~ 479 (480)
T KOG0271|consen 447 ----LPGHADEVFAVDWSPDGQRVASG---GKDKVLRLWR 479 (480)
T ss_pred ----CCCCCceEEEEEecCCCceeecC---CCceEEEeec
Confidence 14555667789999999999999 7777888874
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-40 Score=378.14 Aligned_cols=327 Identities=23% Similarity=0.434 Sum_probs=282.8
Q ss_pred EEEccCCCCEEEEEECCCCC-EEEEEcCCceEEEEecCC--CeEE--EEEe------c----CCCCeEEEEEcCCCCEEE
Q 000268 237 KRVRGHRNAVYCAIFDRSGR-YVITGSDDRLVKIWSMET--AYCL--ASCR------G----HEGDITDLAVSSNNALVA 301 (1757)
Q Consensus 237 ~tL~GH~~~V~~VaFSPDG~-~LATGS~DGtIkIWDl~t--g~~l--~tL~------g----H~~~VtsLafSPDg~lLA 301 (1757)
+.++ |...|.+++|+|-.. .||+|+.|-+.++|++.. +.+. ..|+ + ....|++++|+.+|.+||
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La 251 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA 251 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence 4444 999999999999776 899999999999999863 1111 1111 1 236899999999999999
Q ss_pred EEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCC
Q 000268 302 SASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRN 381 (1757)
Q Consensus 302 SgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~ 381 (1757)
+|+.||.++||+. +|..+.+|..|.++|.++.|+..|. +|++++.||++.+||..++...+.+.+
T Consensus 252 tG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~---yilS~~vD~ttilwd~~~g~~~q~f~~----------- 316 (524)
T KOG0273|consen 252 TGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGT---YILSGGVDGTTILWDAHTGTVKQQFEF----------- 316 (524)
T ss_pred EeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCC---EEEeccCCccEEEEeccCceEEEeeee-----------
Confidence 9999999999995 6888899999999999999999998 999999999999999999887766643
Q ss_pred CCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccc
Q 000268 382 MAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFS 461 (1757)
Q Consensus 382 ~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~ 461 (1757)
|......+.|-.+ ..|++.+.|+.|+|+.+.. ..++.++.+|.+.|.++.|.|.+
T Consensus 317 ---------~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~---------~~P~~t~~GH~g~V~alk~n~tg------ 371 (524)
T KOG0273|consen 317 ---------HSAPALDVDWQSN-DEFATSSTDGCIHVCKVGE---------DRPVKTFIGHHGEVNALKWNPTG------ 371 (524)
T ss_pred ---------ccCCccceEEecC-ceEeecCCCceEEEEEecC---------CCcceeeecccCceEEEEECCCC------
Confidence 3333456777644 4688999999999999843 44678889999999999999986
Q ss_pred cccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCC
Q 000268 462 LADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR 541 (1757)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~ 541 (1757)
.+|++++.|++++||.... ......+..|..
T Consensus 372 --------------------~LLaS~SdD~TlkiWs~~~-----------------------------~~~~~~l~~Hsk 402 (524)
T KOG0273|consen 372 --------------------SLLASCSDDGTLKIWSMGQ-----------------------------SNSVHDLQAHSK 402 (524)
T ss_pred --------------------ceEEEecCCCeeEeeecCC-----------------------------Ccchhhhhhhcc
Confidence 6999999999999998764 334556778899
Q ss_pred CeeEEEEcCCC---------CEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000268 542 GVNMIVWSLDN---------RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1757)
Q Consensus 542 ~VtsVafSPDG---------~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl 612 (1757)
.|..+.|||+| ..|++++.|++|++||+..|.++++|..|..+|++|+|+| +++++|+|+.||.|.||++
T Consensus 403 ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~g~ylAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 403 EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-NGRYLASGSLDGCVHIWST 481 (524)
T ss_pred ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-CCcEEEecCCCCeeEeccc
Confidence 99999999965 4789999999999999999999999999999999999999 8899999999999999999
Q ss_pred CCCceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 000268 613 WEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 655 (1757)
Q Consensus 613 ~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~ 655 (1757)
.+++.++.+. +.+.|..++|+.+|.+|.++-.||.+++.|+.
T Consensus 482 ~~~~l~~s~~-~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 482 KTGKLVKSYQ-GTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cchheeEeec-CCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9999999997 66679999999999999999999999999873
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=387.56 Aligned_cols=429 Identities=19% Similarity=0.282 Sum_probs=345.9
Q ss_pred CcchhhhccccccCccccccceeEEEEcc-CCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEE
Q 000268 213 APSIRAACYAIAKPSTMVQKMQNIKRVRG-HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDL 291 (1757)
Q Consensus 213 ~~~l~s~~~~~a~~~~~~~~~k~l~tL~G-H~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsL 291 (1757)
...+..+..+.....|.+++++.++.+.+ |.++|.-++|+|.|..||+|+.||.|+|||+..+.+.+.|+||.+.|.++
T Consensus 74 ~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl 153 (775)
T KOG0319|consen 74 EEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSL 153 (775)
T ss_pred ccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEE
Confidence 34455555566677788899999999998 99999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCC--EEEEEeCCceEEEEECCCCC-ceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCcccee
Q 000268 292 AVSSNNA--LVASASNDCIIRVWRLPDGL-PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRI 368 (1757)
Q Consensus 292 afSPDg~--lLASgS~DGtIrVWDl~tg~-~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i 368 (1757)
.|.|+-. +|++|..|++|++||+.+.. ++..+..|.+.|++++|++|+. .+++++.|..|.+||+.+.+....+
T Consensus 154 ~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~---~~ls~~RDkvi~vwd~~~~~~l~~l 230 (775)
T KOG0319|consen 154 LFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSL---ELLSVGRDKVIIVWDLVQYKKLKTL 230 (775)
T ss_pred EeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCc---eEEEeccCcEEEEeehhhhhhhhee
Confidence 9999755 68999999999999999665 4888899999999999999975 6777777777777776433322111
Q ss_pred e----------------------------------------------cCCCCcccc------------------------
Q 000268 369 Y----------------------------------------------IPRPSDAVA------------------------ 378 (1757)
Q Consensus 369 ~----------------------------------------------l~~~~~~~~------------------------ 378 (1757)
. .+.... +.
T Consensus 231 p~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e-~~~~~~~~~~~~~l~vtaeQnl~l~d 309 (775)
T KOG0319|consen 231 PLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEE-IDHLLAIESMSQLLLVTAEQNLFLYD 309 (775)
T ss_pred chhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchh-hhcceeccccCceEEEEccceEEEEE
Confidence 1 000000 00
Q ss_pred -----------------------CCC-------------------CCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceE
Q 000268 379 -----------------------GRN-------------------MAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLA 416 (1757)
Q Consensus 379 -----------------------g~~-------------------~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~I 416 (1757)
|.. ........+|...|.++....+|-+|++|+.|.++
T Consensus 310 ~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~sv 389 (775)
T KOG0319|consen 310 EDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSV 389 (775)
T ss_pred ccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceE
Confidence 000 00011235677888888866688899999999999
Q ss_pred EEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEE
Q 000268 417 RVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW 496 (1757)
Q Consensus 417 rVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IW 496 (1757)
++|.+.... .....+....+|.+.|.+++++..+ ...|+++|.|+++++|
T Consensus 390 ilWr~~~~~-----~~~~~~a~~~gH~~svgava~~~~~-------------------------asffvsvS~D~tlK~W 439 (775)
T KOG0319|consen 390 ILWRLNNNC-----SKSLCVAQANGHTNSVGAVAGSKLG-------------------------ASFFVSVSQDCTLKLW 439 (775)
T ss_pred EEEEecCCc-----chhhhhhhhcccccccceeeecccC-------------------------ccEEEEecCCceEEEe
Confidence 999884321 1234567788999999999997654 3689999999999999
Q ss_pred eCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEE
Q 000268 497 IPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVH 576 (1757)
Q Consensus 497 Dl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~ 576 (1757)
++...+... .+...........|...|++|+++|+.++||||+.|.+.+||++..+.+..
T Consensus 440 ~l~~s~~~~--------------------~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~ 499 (775)
T KOG0319|consen 440 DLPKSKETA--------------------FPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLG 499 (775)
T ss_pred cCCCccccc--------------------ccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEE
Confidence 987421000 011111222345689999999999999999999999999999999999999
Q ss_pred EEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 000268 577 SLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 656 (1757)
Q Consensus 577 ~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~t 656 (1757)
+|.||...|+++.|+| ..++++|++.|++|+||.+.++.|+++|.+|...|..+.|-.+|+.|++++.||-|++|++.+
T Consensus 500 vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt 578 (775)
T KOG0319|consen 500 VLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKT 578 (775)
T ss_pred EeeCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccc
Confidence 9999999999999999 778999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccceeecCCCccEEEccCCceeecccccccCcCCCCCcccCCCCCCCCCcchhhhhcccccccceEECCCCCe
Q 000268 657 GESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLK 736 (1757)
Q Consensus 657 Ge~~~~~~~~~~fs~D~r~Li~d~~g~vlD~~tql~phl~~l~~~L~D~~~~p~p~~~Q~l~~~r~~~v~~lAfSPDG~~ 736 (1757)
+++...+ ..|...+++++-+|.+.+
T Consensus 579 ~eC~~tl-------------------------------------------------------D~H~DrvWaL~~~~~~~~ 603 (775)
T KOG0319|consen 579 NECEMTL-------------------------------------------------------DAHNDRVWALSVSPLLDM 603 (775)
T ss_pred hhhhhhh-------------------------------------------------------hhccceeEEEeecCccce
Confidence 8886532 134456778889999999
Q ss_pred EEEeeCCCCCCceEeecc
Q 000268 737 LAVGPDFSLDQGYQLQPL 754 (1757)
Q Consensus 737 LAvg~d~s~~~~v~l~~l 754 (1757)
+++| +.++.+.+|.-
T Consensus 604 ~~tg---g~Dg~i~~wkD 618 (775)
T KOG0319|consen 604 FVTG---GGDGRIIFWKD 618 (775)
T ss_pred eEec---CCCeEEEEeec
Confidence 9999 77777777754
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=360.88 Aligned_cols=287 Identities=28% Similarity=0.453 Sum_probs=265.7
Q ss_pred EEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCC--CCEEEEEeCCceEEEEEC
Q 000268 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSN--NALVASASNDCIIRVWRL 314 (1757)
Q Consensus 237 ~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPD--g~lLASgS~DGtIrVWDl 314 (1757)
..--|-+.+|..+.||++++.|||||.+|.++||+..+...+.+|.||...|.++.|+|. +..||||+.||+|++|++
T Consensus 169 ~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~ 248 (459)
T KOG0272|consen 169 CSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL 248 (459)
T ss_pred hhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence 334467889999999999999999999999999999999999999999999999999997 568999999999999999
Q ss_pred CCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcc
Q 000268 315 PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1757)
Q Consensus 315 ~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~ 394 (1757)
.+..++..+.+|...|..++|+|+|+ +|+|++.|.+-++||+.++..+.. ..+|...
T Consensus 249 ~~e~~l~~l~gH~~RVs~VafHPsG~---~L~TasfD~tWRlWD~~tk~ElL~--------------------QEGHs~~ 305 (459)
T KOG0272|consen 249 SQETPLQDLEGHLARVSRVAFHPSGK---FLGTASFDSTWRLWDLETKSELLL--------------------QEGHSKG 305 (459)
T ss_pred CCCcchhhhhcchhhheeeeecCCCc---eeeecccccchhhcccccchhhHh--------------------hcccccc
Confidence 99999999999999999999999998 999999999999999998864432 3478999
Q ss_pred eEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcc
Q 000268 395 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 474 (1757)
Q Consensus 395 V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~ 474 (1757)
|.+|+|.+||.++++|+.|..-+|||+++ +..+..+.+|...|.+|.|+|+|
T Consensus 306 v~~iaf~~DGSL~~tGGlD~~~RvWDlRt---------gr~im~L~gH~k~I~~V~fsPNG------------------- 357 (459)
T KOG0272|consen 306 VFSIAFQPDGSLAATGGLDSLGRVWDLRT---------GRCIMFLAGHIKEILSVAFSPNG------------------- 357 (459)
T ss_pred cceeEecCCCceeeccCccchhheeeccc---------CcEEEEecccccceeeEeECCCc-------------------
Confidence 99999999999999999999999999987 55788999999999999999998
Q ss_pred cccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcC-CCC
Q 000268 475 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL-DNR 553 (1757)
Q Consensus 475 ~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSP-DG~ 553 (1757)
-.|+||+.|++++|||++... ....+..|..-|+.|.|+| .|.
T Consensus 358 -------y~lATgs~Dnt~kVWDLR~r~-----------------------------~ly~ipAH~nlVS~Vk~~p~~g~ 401 (459)
T KOG0272|consen 358 -------YHLATGSSDNTCKVWDLRMRS-----------------------------ELYTIPAHSNLVSQVKYSPQEGY 401 (459)
T ss_pred -------eEEeecCCCCcEEEeeecccc-----------------------------cceecccccchhhheEecccCCe
Confidence 589999999999999999532 2455678999999999998 889
Q ss_pred EEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000268 554 FVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1757)
Q Consensus 554 ~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWD 611 (1757)
+|++++.|++++||...++.+++++.||.+.|.++.+++ ++.+++|++.|.+|++|.
T Consensus 402 fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~-d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 402 FLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISP-DSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEEcccCcceeeecCCCcccchhhcCCccceEEEEecc-CCceEEEeccCceeeecc
Confidence 999999999999999999999999999999999999999 788999999999999995
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=342.78 Aligned_cols=473 Identities=18% Similarity=0.289 Sum_probs=359.0
Q ss_pred ccccceeEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCe-E-EEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 000268 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY-C-LASCRGHEGDITDLAVSSNNALVASASND 306 (1757)
Q Consensus 229 ~~~~~k~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~-~-l~tL~gH~~~VtsLafSPDg~lLASgS~D 306 (1757)
.+.....+..+..|...|+-..|||.|.|+|+|...|.|+|||..... . ..+++.-.++|.+|+|+.++++|++.+..
T Consensus 45 ~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEG 124 (603)
T KOG0318|consen 45 NIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEG 124 (603)
T ss_pred ECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecC
Confidence 344556677899999999999999999999999999999999987633 2 23566778999999999999999887653
Q ss_pred ----ceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCC
Q 000268 307 ----CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 382 (1757)
Q Consensus 307 ----GtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~ 382 (1757)
|.+.+|| +|..+..+.||...|.++.|-|... +.+++|+.|++|.+|+-.--++
T Consensus 125 rerfg~~F~~D--SG~SvGei~GhSr~ins~~~KpsRP--fRi~T~sdDn~v~ffeGPPFKF------------------ 182 (603)
T KOG0318|consen 125 RERFGHVFLWD--SGNSVGEITGHSRRINSVDFKPSRP--FRIATGSDDNTVAFFEGPPFKF------------------ 182 (603)
T ss_pred ccceeEEEEec--CCCccceeeccceeEeeeeccCCCc--eEEEeccCCCeEEEeeCCCeee------------------
Confidence 3455555 7888999999999999999999754 6999999999999997543222
Q ss_pred CCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeec---CCCCCceEEEEccCccccc
Q 000268 383 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLS---GHENDVNYVQFSGCAVASR 459 (1757)
Q Consensus 383 ~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~---gH~~~V~sLafSpdg~~s~ 459 (1757)
......|...|.|+.|+|||.+||+.+.||.|.+||-.++ ..+..+. +|.+.|.+|+|+|++
T Consensus 183 --k~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg---------e~vg~l~~~~aHkGsIfalsWsPDs---- 247 (603)
T KOG0318|consen 183 --KSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG---------EKVGELEDSDAHKGSIFALSWSPDS---- 247 (603)
T ss_pred --eecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCc---------cEEEEecCCCCccccEEEEEECCCC----
Confidence 2234568889999999999999999999999999998764 3455555 999999999999997
Q ss_pred cccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCccc------------cccccccc--ccCCCCCCCC
Q 000268 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKA------------ARWTQAYH--LKVPPPPMPP 525 (1757)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~------------~~w~~~~~--l~~~~~~~~~ 525 (1757)
..|++++.|.+++|||+.+.+..... ..|..... +.........
T Consensus 248 ----------------------~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~l 305 (603)
T KOG0318|consen 248 ----------------------TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYL 305 (603)
T ss_pred ----------------------ceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEe
Confidence 79999999999999999987644221 12332111 1111111122
Q ss_pred CCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEE-eCCCCCeEEEEEecCCCcEEEEEeCC
Q 000268 526 QPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL-TGHTESTYVLDVHPFNPRIAMSAGYD 604 (1757)
Q Consensus 526 ~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L-~gH~~~VtsLafSPdd~~lLaSgs~D 604 (1757)
.+....+...+.+|...|++++.++|+++|++|+.||.|.-|+..+|..-+.. ++|...|.+++.+. . ..+++.|+|
T Consensus 306 n~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~-~-~~~~t~g~D 383 (603)
T KOG0318|consen 306 NPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASE-S-GELFTIGWD 383 (603)
T ss_pred cccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecC-C-CcEEEEecC
Confidence 23334477888999999999999999999999999999999999988776554 78999999999875 2 345688999
Q ss_pred CcEEEEeCCCC------------ce-------------------EEEEeec--------CcceEEEEEcCCCCEEEEEeC
Q 000268 605 GKTIVWDIWEG------------IP-------------------IRIYEIS--------RFRLVDGKFSPDGASIILSDD 645 (1757)
Q Consensus 605 G~IrIWDl~tg------------~~-------------------l~~l~~~--------~~~VtslafSPDGk~LAsgs~ 645 (1757)
.++++.++..+ ++ +..+..+ .....+++++|++..+|+|+.
T Consensus 384 d~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~ 463 (603)
T KOG0318|consen 384 DTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQ 463 (603)
T ss_pred CeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecc
Confidence 99999977321 00 1111111 113457899999999999999
Q ss_pred CCeEEEEECCCCcccc--------ccccceeecCCCccEEEcc-CCcee--ecccccccCcCCCCCcccCCCCCCCCCcc
Q 000268 646 VGQLYILNTGQGESQK--------DAKYDQFFLGDYRPLVQDT-YGNVL--DQETQLAPHRRNLQDPLCDSAMIPYPEPY 714 (1757)
Q Consensus 646 DG~I~IWdl~tGe~~~--------~~~~~~~fs~D~r~Li~d~-~g~vl--D~~tql~phl~~l~~~L~D~~~~p~p~~~ 714 (1757)
||.|+||.+..++... .......|+||+..|+... .+.++ |...... +.
T Consensus 464 Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~-~~------------------- 523 (603)
T KOG0318|consen 464 DGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV-KT------------------- 523 (603)
T ss_pred cceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce-ec-------------------
Confidence 9999999998765322 3345669999999998544 44332 2111111 00
Q ss_pred hhhhhcccccccceEECCCCCeEEEeeCCCCCCceEeeccCCcccccC---CCccccceeeeCCCCCcccCCCCC
Q 000268 715 QTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMID---PLPEFIDVMDWEPENEVQSDDNDS 786 (1757)
Q Consensus 715 Q~l~~~r~~~v~~lAfSPDG~~LAvg~d~s~~~~v~l~~l~~~~~l~~---plp~~i~~~~~sPDg~~ls~~~~s 786 (1757)
.-+.-|...+.++||||+..++|+| +++..+.+|.+..+...+. ..+..+..+.|.-+.++++...|+
T Consensus 524 -~~w~FHtakI~~~aWsP~n~~vATG---SlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvvSsG~Da 594 (603)
T KOG0318|consen 524 -NRWAFHTAKINCVAWSPNNKLVATG---SLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVSSGQDA 594 (603)
T ss_pred -ceeeeeeeeEEEEEeCCCceEEEec---cccceEEEEEccChhhheEeccccccCceeEEEecCceEEeccCcc
Confidence 0111245668999999999999999 9999999999987754432 344449999999999998876654
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=350.82 Aligned_cols=287 Identities=20% Similarity=0.307 Sum_probs=265.8
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCC
Q 000268 282 RGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY 361 (1757)
Q Consensus 282 ~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~t 361 (1757)
.|.+.+|..+.|+.|+..||||+.+|.++||+..++..+.+|.||...|.++.|+|.... ..|++|+.||++++|++.+
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~-~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSD-LNLATASADGTVKLWKLSQ 250 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCc-cceeeeccCCceeeeccCC
Confidence 366789999999999999999999999999999999999999999999999999998421 2799999999999999988
Q ss_pred CCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecC
Q 000268 362 SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG 441 (1757)
Q Consensus 362 g~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~g 441 (1757)
...+..+ .+|...|..++|+|+|++|++++.|.+-++||+.+ ...+....|
T Consensus 251 e~~l~~l--------------------~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~t---------k~ElL~QEG 301 (459)
T KOG0272|consen 251 ETPLQDL--------------------EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLET---------KSELLLQEG 301 (459)
T ss_pred Ccchhhh--------------------hcchhhheeeeecCCCceeeecccccchhhccccc---------chhhHhhcc
Confidence 7655544 46888999999999999999999999999999976 445667789
Q ss_pred CCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCC
Q 000268 442 HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPP 521 (1757)
Q Consensus 442 H~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~ 521 (1757)
|...|.+++|.++| .++++|+.|..-+|||+++++
T Consensus 302 Hs~~v~~iaf~~DG--------------------------SL~~tGGlD~~~RvWDlRtgr------------------- 336 (459)
T KOG0272|consen 302 HSKGVFSIAFQPDG--------------------------SLAATGGLDSLGRVWDLRTGR------------------- 336 (459)
T ss_pred cccccceeEecCCC--------------------------ceeeccCccchhheeecccCc-------------------
Confidence 99999999999998 689999999999999999744
Q ss_pred CCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEE
Q 000268 522 PMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 601 (1757)
Q Consensus 522 ~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSg 601 (1757)
.+..+.+|...|..|+|||+|-.||||+.|++++|||++...++.++.+|.+-|+.|.|+|..+.+|+|+
T Consensus 337 ----------~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Ta 406 (459)
T KOG0272|consen 337 ----------CIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTA 406 (459)
T ss_pred ----------EEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEc
Confidence 4556778999999999999999999999999999999999999999999999999999999889999999
Q ss_pred eCCCcEEEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000268 602 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 653 (1757)
Q Consensus 602 s~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWd 653 (1757)
+.|++++||...++.+++++.+|.+.|.++.+++||++|++++.|.++++|.
T Consensus 407 syD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 407 SYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999999999999999999999999999999999999995
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=327.69 Aligned_cols=292 Identities=22% Similarity=0.393 Sum_probs=263.8
Q ss_pred ceeEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEE
Q 000268 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1757)
Q Consensus 233 ~k~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVW 312 (1757)
++..++|+||.+.|+++.|++|.++|+++|.||.+.|||.-|...++.+.-...+|..+||+|.|+++|+|+-|+...||
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIY 124 (343)
T ss_pred eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEE
Confidence 45568999999999999999999999999999999999999998899899899999999999999999999999999999
Q ss_pred ECCCC------CceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCC
Q 000268 313 RLPDG------LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1757)
Q Consensus 313 Dl~tg------~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~ 386 (1757)
++.+. ...+.+.+|++.+.|+.|.+|+ .|++++.|.++.+||+++++.+..+
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~----~ilT~SGD~TCalWDie~g~~~~~f------------------ 182 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN----HILTGSGDMTCALWDIETGQQTQVF------------------ 182 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCCC----ceEecCCCceEEEEEcccceEEEEe------------------
Confidence 99754 4456789999999999999976 7999999999999999999876665
Q ss_pred CCCCCCcceEEEEECC-CCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccC
Q 000268 387 SAGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 465 (1757)
Q Consensus 387 ~~~~~~~~V~slafSp-dG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~ 465 (1757)
.+|.+.|.+++++| +++.|++|+.|+..+|||++. ...++.+.+|...|++|.|.|+|
T Consensus 183 --~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~---------~~c~qtF~ghesDINsv~ffP~G---------- 241 (343)
T KOG0286|consen 183 --HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS---------GQCVQTFEGHESDINSVRFFPSG---------- 241 (343)
T ss_pred --cCCcccEEEEecCCCCCCeEEecccccceeeeeccC---------cceeEeecccccccceEEEccCC----------
Confidence 36999999999999 999999999999999999986 45788999999999999999997
Q ss_pred CCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeE
Q 000268 466 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNM 545 (1757)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~Vts 545 (1757)
.-|++|+.|++.++||++..+..... .-.....+|++
T Consensus 242 ----------------~afatGSDD~tcRlyDlRaD~~~a~y---------------------------s~~~~~~gitS 278 (343)
T KOG0286|consen 242 ----------------DAFATGSDDATCRLYDLRADQELAVY---------------------------SHDSIICGITS 278 (343)
T ss_pred ----------------CeeeecCCCceeEEEeecCCcEEeee---------------------------ccCcccCCcee
Confidence 68999999999999999964321110 01123457999
Q ss_pred EEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000268 546 IVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1757)
Q Consensus 546 VafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWD 611 (1757)
++||..|++|++|..|.++.|||.-.++.+..|.||.+.|++|..+| ++..|+||++|.+++||.
T Consensus 279 v~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~-DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 279 VAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSP-DGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECC-CCcEEEecchhHheeecC
Confidence 99999999999999999999999999999999999999999999999 889999999999999994
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=334.17 Aligned_cols=424 Identities=18% Similarity=0.267 Sum_probs=336.2
Q ss_pred CCCEEEEEECCCCCEEEEEcCCceEEEEecCCC--------eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEEC
Q 000268 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA--------YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 314 (1757)
Q Consensus 243 ~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg--------~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl 314 (1757)
..+|.|+.|||+|+++|.|.. ..+.||....- .+.+++.+|...|++|.|+.|.++|++|+.|.+++||++
T Consensus 96 k~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v 174 (893)
T KOG0291|consen 96 KRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGV 174 (893)
T ss_pred cCccceEEECCCCcEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEe
Confidence 578999999999999998865 58999986432 345667799999999999999999999999999999999
Q ss_pred CCCCc--eEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceee--cCCCCc----cccCCC-----
Q 000268 315 PDGLP--ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIY--IPRPSD----AVAGRN----- 381 (1757)
Q Consensus 315 ~tg~~--l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~--l~~~~~----~~~g~~----- 381 (1757)
...+- ...+.+|...|.+.-|..+.. .+++.+.||.+.+|.....-....-. -..... ...+..
T Consensus 175 ~~~k~~~~~~l~gHkd~VvacfF~~~~~---~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~ 251 (893)
T KOG0291|consen 175 DGNKNLFTYALNGHKDYVVACFFGANSL---DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKI 251 (893)
T ss_pred ccccccceEeccCCCcceEEEEeccCcc---eEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcce
Confidence 76655 567789999999999999875 79999999999999876321000000 000000 000000
Q ss_pred C---CCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccc
Q 000268 382 M---APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVAS 458 (1757)
Q Consensus 382 ~---~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s 458 (1757)
. ............|++++|++.-..||+|-..|...+|.+.. ...+..+.-....|..++|+..|
T Consensus 252 ~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~---------f~lih~LSis~~~I~t~~~N~tG--- 319 (893)
T KOG0291|consen 252 FWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD---------FNLIHSLSISDQKILTVSFNSTG--- 319 (893)
T ss_pred EEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCC---------ceEEEEeecccceeeEEEecccC---
Confidence 0 00111122337799999999999999999999999999843 44667777777889999998765
Q ss_pred ccccccCCCCCCCCcccccccCCCcEEEEcCC-CeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeec
Q 000268 459 RFSLADSSKEDSTPKFKNSWFCHDNIVTCSRD-GSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL 537 (1757)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~D-GtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~ 537 (1757)
+.|+.|+.. |.+.||+..+. .-+....
T Consensus 320 -----------------------DWiA~g~~klgQLlVweWqsE-----------------------------sYVlKQQ 347 (893)
T KOG0291|consen 320 -----------------------DWIAFGCSKLGQLLVWEWQSE-----------------------------SYVLKQQ 347 (893)
T ss_pred -----------------------CEEEEcCCccceEEEEEeecc-----------------------------ceeeecc
Confidence 678877664 89999988752 2234456
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce
Q 000268 538 PTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIP 617 (1757)
Q Consensus 538 ~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~ 617 (1757)
+|...++++++||||++||+|+.||.|+|||..+|-|+.+|..|+..|+.+.|+. .++.+++++-||+|+.||+...+.
T Consensus 348 gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrN 426 (893)
T KOG0291|consen 348 GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRN 426 (893)
T ss_pred ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccce
Confidence 7899999999999999999999999999999999999999999999999999999 788999999999999999999999
Q ss_pred EEEEeecC-cceEEEEEcCCCCEEEEEeCCC-eEEEEECCCCccccccccceeecCCCccEEEccCCceeecccccccCc
Q 000268 618 IRIYEISR-FRLVDGKFSPDGASIILSDDVG-QLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHR 695 (1757)
Q Consensus 618 l~~l~~~~-~~VtslafSPDGk~LAsgs~DG-~I~IWdl~tGe~~~~~~~~~~fs~D~r~Li~d~~g~vlD~~tql~phl 695 (1757)
.++|.... ....+++..|.|..+++|+.|. .|+||++.+|+.+..+
T Consensus 427 fRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiL-------------------------------- 474 (893)
T KOG0291|consen 427 FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDIL-------------------------------- 474 (893)
T ss_pred eeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehh--------------------------------
Confidence 99997443 2345788899999999987765 8999999998654321
Q ss_pred CCCCCcccCCCCCCCCCcchhhhhcccccccceEECCCCCeEEEeeCCCCCCceEeeccCCcccccCCCc--cccceeee
Q 000268 696 RNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLP--EFIDVMDW 773 (1757)
Q Consensus 696 ~~l~~~L~D~~~~p~p~~~Q~l~~~r~~~v~~lAfSPDG~~LAvg~d~s~~~~v~l~~l~~~~~l~~plp--~~i~~~~~ 773 (1757)
.||.-.|.+++|+|+|..||.+ +-+.++++|+.-+.....++++ .-+..++|
T Consensus 475 -----------------------sGHEgPVs~l~f~~~~~~LaS~---SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsf 528 (893)
T KOG0291|consen 475 -----------------------SGHEGPVSGLSFSPDGSLLASG---SWDKTVRIWDIFSSSGTVETLEIRSDVLAVSF 528 (893)
T ss_pred -----------------------cCCCCcceeeEEccccCeEEec---cccceEEEEEeeccCceeeeEeeccceeEEEE
Confidence 1333345578999999999999 9999999999977766777654 55778999
Q ss_pred CCCCCcccCCCCCccccccc
Q 000268 774 EPENEVQSDDNDSEYNVAEE 793 (1757)
Q Consensus 774 sPDg~~ls~~~~s~~~~~~~ 793 (1757)
.|||+.++..+.++-+-=++
T Consensus 529 rPdG~elaVaTldgqItf~d 548 (893)
T KOG0291|consen 529 RPDGKELAVATLDGQITFFD 548 (893)
T ss_pred cCCCCeEEEEEecceEEEEE
Confidence 99999999998887553333
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=332.54 Aligned_cols=364 Identities=20% Similarity=0.321 Sum_probs=296.7
Q ss_pred ccccceeEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeE--EEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 000268 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYC--LASCRGHEGDITDLAVSSNNALVASASND 306 (1757)
Q Consensus 229 ~~~~~k~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~--l~tL~gH~~~VtsLafSPDg~lLASgS~D 306 (1757)
.+..+...+++.||-..|.++.|+.|.++|++||.|.+++||++...+- ...+.+|...|.++-|..+...|++.+.|
T Consensus 131 ~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskd 210 (893)
T KOG0291|consen 131 EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKD 210 (893)
T ss_pred ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecC
Confidence 4567888999999999999999999999999999999999999987665 55678999999999999999999999999
Q ss_pred ceEEEEECCC-----------------------CCc-----e------EEecCCCCceEEEEecCCCCceEEEEEEeCCC
Q 000268 307 CIIRVWRLPD-----------------------GLP-----I------SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDG 352 (1757)
Q Consensus 307 GtIrVWDl~t-----------------------g~~-----l------~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DG 352 (1757)
|.|.+|.... ++. . .-+......|++.+|++... .|++|-..|
T Consensus 211 G~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~---~lvvgFssG 287 (893)
T KOG0291|consen 211 GALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTN---LLVVGFSSG 287 (893)
T ss_pred ceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCce---EEEEEecCC
Confidence 9999997651 111 0 11122347899999999765 899999999
Q ss_pred cEEEEecCCCCccceeecCCCCc----------ccc--CC-----------CCCCCCCCCCCCcceEEEEECCCCCEEEE
Q 000268 353 TCRIWDARYSQFSPRIYIPRPSD----------AVA--GR-----------NMAPSSSAGPQSHQIFCCAFNANGTVFVT 409 (1757)
Q Consensus 353 tIrIWDl~tg~~~~~i~l~~~~~----------~~~--g~-----------~~~~~~~~~~~~~~V~slafSpdG~~Las 409 (1757)
...+|.+..-.++..+.+..... .++ +. ...-.....+|...+.+++++|||++||+
T Consensus 288 ~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaT 367 (893)
T KOG0291|consen 288 EFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIAT 367 (893)
T ss_pred eeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEe
Confidence 99999998877766665442211 111 00 00112234678899999999999999999
Q ss_pred eeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcC
Q 000268 410 GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR 489 (1757)
Q Consensus 410 Gs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~ 489 (1757)
|+.||.|+|||... +.++.++..|+..|+.++|+..+ ..+++.+-
T Consensus 368 G~eDgKVKvWn~~S---------gfC~vTFteHts~Vt~v~f~~~g--------------------------~~llssSL 412 (893)
T KOG0291|consen 368 GAEDGKVKVWNTQS---------GFCFVTFTEHTSGVTAVQFTARG--------------------------NVLLSSSL 412 (893)
T ss_pred ccCCCcEEEEeccC---------ceEEEEeccCCCceEEEEEEecC--------------------------CEEEEeec
Confidence 99999999999965 56789999999999999999876 78999999
Q ss_pred CCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCC-eEEEEE
Q 000268 490 DGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC-RICVWN 568 (1757)
Q Consensus 490 DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG-~I~IWD 568 (1757)
||+|+.||+...+.... -..+......|++..|.|..+.+|+.|. .|.||+
T Consensus 413 DGtVRAwDlkRYrNfRT----------------------------ft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS 464 (893)
T KOG0291|consen 413 DGTVRAWDLKRYRNFRT----------------------------FTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWS 464 (893)
T ss_pred CCeEEeeeecccceeee----------------------------ecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEE
Confidence 99999999985331110 0112234567899999999999999876 599999
Q ss_pred CCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc-eEEEEeecCcceEEEEEcCCCCEEEEEeCCC
Q 000268 569 AADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI-PIRIYEISRFRLVDGKFSPDGASIILSDDVG 647 (1757)
Q Consensus 569 l~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~-~l~~l~~~~~~VtslafSPDGk~LAsgs~DG 647 (1757)
+++|+++-.|.||.++|.+++|+| .+..|+|+++|.+|++||+-... .+.++. ....++.++|+|||+-||+++-||
T Consensus 465 ~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldg 542 (893)
T KOG0291|consen 465 VQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDG 542 (893)
T ss_pred eecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecc
Confidence 999999999999999999999999 67799999999999999997653 444454 666899999999999999999999
Q ss_pred eEEEEECCCCccc
Q 000268 648 QLYILNTGQGESQ 660 (1757)
Q Consensus 648 ~I~IWdl~tGe~~ 660 (1757)
+|.+||+..+...
T Consensus 543 qItf~d~~~~~q~ 555 (893)
T KOG0291|consen 543 QITFFDIKEAVQV 555 (893)
T ss_pred eEEEEEhhhceee
Confidence 9999999876544
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=344.52 Aligned_cols=384 Identities=19% Similarity=0.233 Sum_probs=311.2
Q ss_pred ccccccccccccccCCccccccCCcchhhhccccccCccccccceeEEEEccCCCCEEEEEECCCCC--EEEEEcCCceE
Q 000268 190 MYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGR--YVITGSDDRLV 267 (1757)
Q Consensus 190 ~~~~~V~~l~~r~~Gg~~~~~~~~~~l~s~~~~~a~~~~~~~~~k~l~tL~GH~~~V~~VaFSPDG~--~LATGS~DGtI 267 (1757)
.|...|-.+.+.+.|+. ++.++-....+.|++....+.+.|+||.+.|.++.|+|+-. .|++|..|++|
T Consensus 103 ~He~Pvi~ma~~~~g~L---------lAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v 173 (775)
T KOG0319|consen 103 IHEAPVITMAFDPTGTL---------LATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTV 173 (775)
T ss_pred ccCCCeEEEEEcCCCce---------EEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceE
Confidence 35555555666665542 33445566778899999999999999999999999999765 48999999999
Q ss_pred EEEecCCCeE-EEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCce--------------------------
Q 000268 268 KIWSMETAYC-LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI-------------------------- 320 (1757)
Q Consensus 268 kIWDl~tg~~-l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l-------------------------- 320 (1757)
++||+.+... +.++..|...|++++|++|+..+++++.|..|.|||+.+.+.+
T Consensus 174 ~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~ 253 (775)
T KOG0319|consen 174 RVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYI 253 (775)
T ss_pred EEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEE
Confidence 9999986554 8888899999999999999999999999999999987210000
Q ss_pred --------------------------------------------------------------------------------
Q 000268 321 -------------------------------------------------------------------------------- 320 (1757)
Q Consensus 321 -------------------------------------------------------------------------------- 320 (1757)
T Consensus 254 ~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG 333 (775)
T KOG0319|consen 254 ITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLG 333 (775)
T ss_pred EEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecC
Confidence
Q ss_pred -------------------------EEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCc
Q 000268 321 -------------------------SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSD 375 (1757)
Q Consensus 321 -------------------------~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~ 375 (1757)
..+.||+..|.++....+|. +|++|+.|.++++|.++.+......
T Consensus 334 ~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~---llat~sKD~svilWr~~~~~~~~~~------- 403 (775)
T KOG0319|consen 334 PEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGD---LLATGSKDKSVILWRLNNNCSKSLC------- 403 (775)
T ss_pred CccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCc---EEEEecCCceEEEEEecCCcchhhh-------
Confidence 11234555566665333443 8999999999999998544322211
Q ss_pred cccCCCCCCCCCCCCCCcceEEEEECCCC-CEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccC
Q 000268 376 AVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 454 (1757)
Q Consensus 376 ~~~g~~~~~~~~~~~~~~~V~slafSpdG-~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpd 454 (1757)
.....+|.+.|.+++++..+ .+|++++.|+++++|++...+..........-.....|...|++++++|+
T Consensus 404 ---------~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n 474 (775)
T KOG0319|consen 404 ---------VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN 474 (775)
T ss_pred ---------hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCC
Confidence 22334688999999998755 68999999999999999762222111111122345689999999999998
Q ss_pred ccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCce
Q 000268 455 AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQ 534 (1757)
Q Consensus 455 g~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~ 534 (1757)
. ..++|||.|.+.+||++.. .....
T Consensus 475 d--------------------------kLiAT~SqDktaKiW~le~-----------------------------~~l~~ 499 (775)
T KOG0319|consen 475 D--------------------------KLIATGSQDKTAKIWDLEQ-----------------------------LRLLG 499 (775)
T ss_pred C--------------------------ceEEecccccceeeecccC-----------------------------ceEEE
Confidence 4 6899999999999999884 33456
Q ss_pred eecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 000268 535 RILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614 (1757)
Q Consensus 535 ~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~t 614 (1757)
.+.+|..+|.+|.|+|..+.++|++.|++|+||.+.++.++++|.||...|..+.|-. ++..|+|++.||.|+||++.+
T Consensus 500 vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~-~~~qliS~~adGliKlWnikt 578 (775)
T KOG0319|consen 500 VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR-NGKQLISAGADGLIKLWNIKT 578 (775)
T ss_pred EeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeee-CCcEEEeccCCCcEEEEeccc
Confidence 6789999999999999999999999999999999999999999999999999999988 677888999999999999999
Q ss_pred CceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 000268 615 GIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 657 (1757)
Q Consensus 615 g~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~tG 657 (1757)
+.|+.++..|...|++++.+|.+.++++|+.||.|.+|.-.+-
T Consensus 579 ~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 579 NECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred hhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 9999999999999999999999999999999999999986554
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-32 Score=315.72 Aligned_cols=382 Identities=16% Similarity=0.198 Sum_probs=303.9
Q ss_pred ccccceeEEEEccCCCCEEEEEECCCCC-EEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCc
Q 000268 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGR-YVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDC 307 (1757)
Q Consensus 229 ~~~~~k~l~tL~GH~~~V~~VaFSPDG~-~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DG 307 (1757)
+..++..+-.+.||...|+++.|-|... +++||++|++|.+|.-...+...+++.|..-|.|+.|+|||.++|+++.||
T Consensus 133 ~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDg 212 (603)
T KOG0318|consen 133 LWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDG 212 (603)
T ss_pred EecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCc
Confidence 3455667788999999999999999764 699999999999999888888888999999999999999999999999999
Q ss_pred eEEEEECCCCCceEEec---CCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccc-------
Q 000268 308 IIRVWRLPDGLPISVLR---GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAV------- 377 (1757)
Q Consensus 308 tIrVWDl~tg~~l~~l~---gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~------- 377 (1757)
.|.|||-.+|..+..+. +|.+.|.+|+|+||+. .|++++.|.+++|||+.+..++.++.+.......
T Consensus 213 ki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~---~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq 289 (603)
T KOG0318|consen 213 KIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST---QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ 289 (603)
T ss_pred cEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc---eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe
Confidence 99999999999999997 8999999999999998 9999999999999999999988887665441100
Q ss_pred ----------------cCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecC
Q 000268 378 ----------------AGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG 441 (1757)
Q Consensus 378 ----------------~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~g 441 (1757)
......+.....+|...|++++.++++.+|++|+.||.|.-|+..++... ...-.+
T Consensus 290 kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~--------~~~g~~ 361 (603)
T KOG0318|consen 290 KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD--------RLAGKG 361 (603)
T ss_pred CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc--------cccccc
Confidence 01112234556789999999999999999999999999999999765321 112267
Q ss_pred CCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCC
Q 000268 442 HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPP 521 (1757)
Q Consensus 442 H~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~ 521 (1757)
|...|..++.+.. +.+++++.|.++++.++........ ..+.+...
T Consensus 362 h~nqI~~~~~~~~---------------------------~~~~t~g~Dd~l~~~~~~~~~~t~~-------~~~~lg~Q 407 (603)
T KOG0318|consen 362 HTNQIKGMAASES---------------------------GELFTIGWDDTLRVISLKDNGYTKS-------EVVKLGSQ 407 (603)
T ss_pred ccceEEEEeecCC---------------------------CcEEEEecCCeEEEEecccCccccc-------ceeecCCC
Confidence 9999999988754 3789999999999987754321111 00111111
Q ss_pred CCCCCCCCC---------CCc--------eeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceE--EEEeCCC
Q 000268 522 PMPPQPPRG---------GPR--------QRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLV--HSLTGHT 582 (1757)
Q Consensus 522 ~~~~~~~~~---------~~~--------~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll--~~L~gH~ 582 (1757)
|........ ..+ ...........+++++|++..+++|+.||.|+||.+..+.+. ..+..|.
T Consensus 408 P~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~ 487 (603)
T KOG0318|consen 408 PKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHR 487 (603)
T ss_pred ceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeeccc
Confidence 111100000 011 111223345788999999999999999999999999876543 3567899
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEE-EeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 000268 583 ESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRI-YEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 656 (1757)
Q Consensus 583 ~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~-l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~t 656 (1757)
+.|+++++|| ++.+||+|...+.|.+||+.+.+.... +.-|...|.+++|||+.++||+|+-|-.|.||++..
T Consensus 488 a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 488 AAITDVAYSP-DGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKK 561 (603)
T ss_pred CCceEEEECC-CCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccC
Confidence 9999999999 889999999999999999998876433 334888999999999999999999999999999865
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=301.17 Aligned_cols=293 Identities=21% Similarity=0.321 Sum_probs=236.9
Q ss_pred cceeEEEEccCCCCEEEEEECCC-CCEEEEEcCCceEEEEecC-----CCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 000268 232 KMQNIKRVRGHRNAVYCAIFDRS-GRYVITGSDDRLVKIWSME-----TAYCLASCRGHEGDITDLAVSSNNALVASASN 305 (1757)
Q Consensus 232 ~~k~l~tL~GH~~~V~~VaFSPD-G~~LATGS~DGtIkIWDl~-----tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~ 305 (1757)
.+.+..+|.||.+.|+.++..+. -..|++++.|.+|.+|++. .|..++.+.||+..|..++.++||++.++++.
T Consensus 4 ~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~sw 83 (315)
T KOG0279|consen 4 QLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASW 83 (315)
T ss_pred hheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccc
Confidence 45667889999999999999987 4678899999999999874 57889999999999999999999999999999
Q ss_pred CceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCC
Q 000268 306 DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS 385 (1757)
Q Consensus 306 DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~ 385 (1757)
|+++++||+.+|+..+.|.+|...|.+++|++|+. .+++|+.|.+|++|++.... ..++.
T Consensus 84 D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~---qivSGSrDkTiklwnt~g~c-k~t~~---------------- 143 (315)
T KOG0279|consen 84 DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNR---QIVSGSRDKTIKLWNTLGVC-KYTIH---------------- 143 (315)
T ss_pred cceEEEEEecCCcEEEEEEecCCceEEEEecCCCc---eeecCCCcceeeeeeecccE-EEEEe----------------
Confidence 99999999999999999999999999999999987 99999999999999986442 11110
Q ss_pred CCCCCCCcceEEEEECCC--CCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccc
Q 000268 386 SSAGPQSHQIFCCAFNAN--GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLA 463 (1757)
Q Consensus 386 ~~~~~~~~~V~slafSpd--G~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~ 463 (1757)
...+...|.|+.|+|+ ..
T Consensus 144 --~~~~~~WVscvrfsP~~~~p---------------------------------------------------------- 163 (315)
T KOG0279|consen 144 --EDSHREWVSCVRFSPNESNP---------------------------------------------------------- 163 (315)
T ss_pred --cCCCcCcEEEEEEcCCCCCc----------------------------------------------------------
Confidence 0112445666666654 33
Q ss_pred cCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCe
Q 000268 464 DSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGV 543 (1757)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~V 543 (1757)
.|++++.|++|++||+++.+ ....+.+|...+
T Consensus 164 -------------------~Ivs~s~DktvKvWnl~~~~-----------------------------l~~~~~gh~~~v 195 (315)
T KOG0279|consen 164 -------------------IIVSASWDKTVKVWNLRNCQ-----------------------------LRTTFIGHSGYV 195 (315)
T ss_pred -------------------EEEEccCCceEEEEccCCcc-----------------------------hhhccccccccE
Confidence 44555555555555554311 122345677889
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee
Q 000268 544 NMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEI 623 (1757)
Q Consensus 544 tsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~ 623 (1757)
+.+++||||..+++|+.||.+.+||+..++.+..+. |...|.+++|+| +... +++..+..|+|||+.++.++..+..
T Consensus 196 ~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fsp-nryw-L~~at~~sIkIwdl~~~~~v~~l~~ 272 (315)
T KOG0279|consen 196 NTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSP-NRYW-LCAATATSIKIWDLESKAVVEELKL 272 (315)
T ss_pred EEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecC-Ccee-EeeccCCceEEEeccchhhhhhccc
Confidence 999999999999999999999999999999988876 778899999999 5444 4555677799999999988877652
Q ss_pred c---------CcceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 000268 624 S---------RFRLVDGKFSPDGASIILSDDVGQLYILNTG 655 (1757)
Q Consensus 624 ~---------~~~VtslafSPDGk~LAsgs~DG~I~IWdl~ 655 (1757)
. .....+++||+||+.|++|..|+.|++|.+.
T Consensus 273 d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 273 DGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 1 1124578999999999999999999999875
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-32 Score=296.72 Aligned_cols=294 Identities=19% Similarity=0.248 Sum_probs=262.7
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEE
Q 000268 278 LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIW 357 (1757)
Q Consensus 278 l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIW 357 (1757)
.++|+||.+.|.++.|++|.++|++++.||.+.|||.-+...+..+.-....|..++|+|.++ ++++|+.|..+.||
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~---~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGN---FVACGGLDNKCSIY 124 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCC---eEEecCcCceeEEE
Confidence 378899999999999999999999999999999999999988888888899999999999998 99999999999999
Q ss_pred ecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCccee
Q 000268 358 DARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEID 437 (1757)
Q Consensus 358 Dl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~ 437 (1757)
++.+....... .....+.+|.+.+.|+.|.+|+ .|++++.|.++.+||+.+ ++.+.
T Consensus 125 ~ls~~d~~g~~--------------~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~---------g~~~~ 180 (343)
T KOG0286|consen 125 PLSTRDAEGNV--------------RVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIET---------GQQTQ 180 (343)
T ss_pred ecccccccccc--------------eeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEccc---------ceEEE
Confidence 99855211111 1122346799999999999755 689999999999999976 56788
Q ss_pred eecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCccccccccccccc
Q 000268 438 VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLK 517 (1757)
Q Consensus 438 ~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~ 517 (1757)
.+.+|.+.|.++.++|.. .+.+++|+.|+..++||++.
T Consensus 181 ~f~GH~gDV~slsl~p~~-------------------------~ntFvSg~cD~~aklWD~R~----------------- 218 (343)
T KOG0286|consen 181 VFHGHTGDVMSLSLSPSD-------------------------GNTFVSGGCDKSAKLWDVRS----------------- 218 (343)
T ss_pred EecCCcccEEEEecCCCC-------------------------CCeEEecccccceeeeeccC-----------------
Confidence 999999999999999942 37999999999999999995
Q ss_pred CCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCC--CCCeEEEEEecCCC
Q 000268 518 VPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH--TESTYVLDVHPFNP 595 (1757)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH--~~~VtsLafSPdd~ 595 (1757)
+...+.+.+|...|++|+|.|+|.-+++|+.|++.++||++..+.+..+... ...|++++||. .+
T Consensus 219 ------------~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~-SG 285 (343)
T KOG0286|consen 219 ------------GQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK-SG 285 (343)
T ss_pred ------------cceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc-cc
Confidence 4567788899999999999999999999999999999999999988888632 34799999999 88
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000268 596 RIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 653 (1757)
Q Consensus 596 ~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWd 653 (1757)
++|++|..|.++.+||.-.++.+..+.+|...|.++..+|||.-|++|+.|..|+||.
T Consensus 286 RlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 286 RLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999999999999999999999999999999999999999999999999999999994
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-32 Score=324.76 Aligned_cols=431 Identities=17% Similarity=0.253 Sum_probs=335.8
Q ss_pred hhhcc-ccccCccccccceeEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcC
Q 000268 217 RAACY-AIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSS 295 (1757)
Q Consensus 217 ~s~~~-~~a~~~~~~~~~k~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSP 295 (1757)
.+++| .+.+..|........-+|.||..+|+++.|+..|.+||+||.|+.|.|||+-.-.-+..++||...|+.+-|..
T Consensus 80 lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~ 159 (888)
T KOG0306|consen 80 LAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLN 159 (888)
T ss_pred EEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccC
Confidence 35555 34555566555688899999999999999999999999999999999999988888899999999999999998
Q ss_pred CCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCC----------c-
Q 000268 296 NNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ----------F- 364 (1757)
Q Consensus 296 Dg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~----------~- 364 (1757)
+.++|++.+.|+.|++||+++..+..+.-.|.+.|+++++.++ .+++++.|+.+++|++.... +
T Consensus 160 ~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~-----~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~ 234 (888)
T KOG0306|consen 160 GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEK-----LLVTAGTDSELKVWELAFEDDEKETNRYISTK 234 (888)
T ss_pred CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecc-----eEEEEecCCceEEEEeecccccccccccceee
Confidence 8889999999999999999999999999999999999999993 79999999999999981100 0
Q ss_pred -----c-----ceeecCCC-Cc---------------------------------------------ccc----------
Q 000268 365 -----S-----PRIYIPRP-SD---------------------------------------------AVA---------- 378 (1757)
Q Consensus 365 -----~-----~~i~l~~~-~~---------------------------------------------~~~---------- 378 (1757)
. +.+.+... .. ...
T Consensus 235 ~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~ 314 (888)
T KOG0306|consen 235 LRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRL 314 (888)
T ss_pred ccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHH
Confidence 0 00000000 00 000
Q ss_pred ----------------CCCC--------------------CC---------CCCCCCCCcceEEEEECCCCCEEEEeeCC
Q 000268 379 ----------------GRNM--------------------AP---------SSSAGPQSHQIFCCAFNANGTVFVTGSSD 413 (1757)
Q Consensus 379 ----------------g~~~--------------------~~---------~~~~~~~~~~V~slafSpdG~~LasGs~D 413 (1757)
+... .. .....+|...|.+++|+.+...+++|+ .
T Consensus 315 ~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~ 393 (888)
T KOG0306|consen 315 ETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-G 393 (888)
T ss_pred HheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-C
Confidence 0000 00 012356778889999998877666664 5
Q ss_pred ceEEEecCCCCCCCCCCCC-------------------------------CcceeeecCCCCCceEEEEccCcccccccc
Q 000268 414 TLARVWNACKPNTDDSDQP-------------------------------NHEIDVLSGHENDVNYVQFSGCAVASRFSL 462 (1757)
Q Consensus 414 G~IrVWDl~t~~~~~s~~~-------------------------------~~~i~~l~gH~~~V~sLafSpdg~~s~~~~ 462 (1757)
+.|.||+..+.++..+... ...+....+|.+.|+.++.+|++
T Consensus 394 ~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~------- 466 (888)
T KOG0306|consen 394 ESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDN------- 466 (888)
T ss_pred CcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCC-------
Confidence 6788999887654322111 12233456788889999988886
Q ss_pred ccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCC
Q 000268 463 ADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRG 542 (1757)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~ 542 (1757)
..+++||.|.+|++||+.--.. .+.... ..-.-...+...-...
T Consensus 467 -------------------~g~vT~saDktVkfWdf~l~~~--------------~~gt~~---k~lsl~~~rtLel~dd 510 (888)
T KOG0306|consen 467 -------------------KGFVTGSADKTVKFWDFKLVVS--------------VPGTQK---KVLSLKHTRTLELEDD 510 (888)
T ss_pred -------------------CceEEecCCcEEEEEeEEEEec--------------cCcccc---eeeeeccceEEecccc
Confidence 6899999999999999873110 000000 0000111234455678
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEe
Q 000268 543 VNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE 622 (1757)
Q Consensus 543 VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~ 622 (1757)
|.|+.+||||++|+++--|.+|+||-+.+.+..-.|.||.-+|.||..|| ++.+++|||.|.+|+||-+.=|.|-+.+.
T Consensus 511 vL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~f 589 (888)
T KOG0306|consen 511 VLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFF 589 (888)
T ss_pred EEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999 88899999999999999999999999999
Q ss_pred ecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCccccccccceeecCCCccEEEccCCceeecccccccCcCCCCCcc
Q 000268 623 ISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPL 702 (1757)
Q Consensus 623 ~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~tGe~~~~~~~~~~fs~D~r~Li~d~~g~vlD~~tql~phl~~l~~~L 702 (1757)
+|...|.++.|-|....+++++.||.|+-||-..-+.++
T Consensus 590 AHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq----------------------------------------- 628 (888)
T KOG0306|consen 590 AHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQ----------------------------------------- 628 (888)
T ss_pred cccCceeEEEEcccceeEEEecCcceEEeechhhhhhhe-----------------------------------------
Confidence 999999999999999999999999999999954322211
Q ss_pred cCCCCCCCCCcchhhhhcccccccceEECCCCCeEEEeeCCCCCCceEeeccC
Q 000268 703 CDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLA 755 (1757)
Q Consensus 703 ~D~~~~p~p~~~Q~l~~~r~~~v~~lAfSPDG~~LAvg~d~s~~~~v~l~~l~ 755 (1757)
.+++|...++++|.+|+|.+++.+ +.+..+++|.-.
T Consensus 629 --------------~L~~H~~ev~cLav~~~G~~vvs~---shD~sIRlwE~t 664 (888)
T KOG0306|consen 629 --------------KLDGHHSEVWCLAVSPNGSFVVSS---SHDKSIRLWERT 664 (888)
T ss_pred --------------eeccchheeeeeEEcCCCCeEEec---cCCceeEeeecc
Confidence 123455567899999999999999 889999999774
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=302.16 Aligned_cols=339 Identities=17% Similarity=0.259 Sum_probs=281.1
Q ss_pred eEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEEC
Q 000268 235 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 314 (1757)
Q Consensus 235 ~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl 314 (1757)
-+.+|..|+..|++|+.+|+.+++|||+.|....||++.+|..+..+.+|...|+++.|+.+|.+||||+.+|.|+||..
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcc
Q 000268 315 PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1757)
Q Consensus 315 ~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~ 394 (1757)
.++.....+......|.=+.|+|.+. .|++|+.||.|.+|.+......+.+ .+|...
T Consensus 136 stg~~~~~~~~e~~dieWl~WHp~a~---illAG~~DGsvWmw~ip~~~~~kv~--------------------~Gh~~~ 192 (399)
T KOG0296|consen 136 STGGEQWKLDQEVEDIEWLKWHPRAH---ILLAGSTDGSVWMWQIPSQALCKVM--------------------SGHNSP 192 (399)
T ss_pred ccCceEEEeecccCceEEEEeccccc---EEEeecCCCcEEEEECCCcceeeEe--------------------cCCCCC
Confidence 99998888876777888899999775 9999999999999999876444333 357888
Q ss_pred eEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCC-CCCceEEEEccCccccccccccCCCCCCCCc
Q 000268 395 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH-ENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1757)
Q Consensus 395 V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH-~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~ 473 (1757)
+++-.|.|+|+.+++|..||+|++|+..++. ++..+.+. .....++.++..+
T Consensus 193 ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~---------p~~~~~~~e~~~~~~~~~~~~~------------------ 245 (399)
T KOG0296|consen 193 CTCGEFIPDGKRILTGYDDGTIIVWNPKTGQ---------PLHKITQAEGLELPCISLNLAG------------------ 245 (399)
T ss_pred cccccccCCCceEEEEecCceEEEEecCCCc---------eeEEecccccCcCCcccccccc------------------
Confidence 9999999999999999999999999997743 33333321 2334555555443
Q ss_pred ccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCC---CCeeEEEEcC
Q 000268 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP---RGVNMIVWSL 550 (1757)
Q Consensus 474 ~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~---~~VtsVafSP 550 (1757)
..++.|+.++.+.+-+..+++....... ........+. ..|-++.||.
T Consensus 246 --------~~~~~g~~e~~~~~~~~~sgKVv~~~n~---------------------~~~~l~~~~e~~~esve~~~~ss 296 (399)
T KOG0296|consen 246 --------STLTKGNSEGVACGVNNGSGKVVNCNNG---------------------TVPELKPSQEELDESVESIPSSS 296 (399)
T ss_pred --------ceeEeccCCccEEEEccccceEEEecCC---------------------CCccccccchhhhhhhhhccccc
Confidence 5788888899988887776552211110 0000011122 3355566677
Q ss_pred CCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCcceEE
Q 000268 551 DNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVD 630 (1757)
Q Consensus 551 DG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~Vts 630 (1757)
.-.+.|+|+.||+|.|||+...++.+.+. |...|+.+.|-+ ..+|++++.+|.|++||.++|+++.++.+|...|.+
T Consensus 297 ~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~ 373 (399)
T KOG0296|consen 297 KLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILD 373 (399)
T ss_pred ccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeE
Confidence 77889999999999999998888777665 888899999987 457778999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECC
Q 000268 631 GKFSPDGASIILSDDVGQLYILNTG 655 (1757)
Q Consensus 631 lafSPDGk~LAsgs~DG~I~IWdl~ 655 (1757)
++++|+++++++++.|++.+||++.
T Consensus 374 f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 374 FALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999999863
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-31 Score=287.03 Aligned_cols=296 Identities=18% Similarity=0.354 Sum_probs=255.8
Q ss_pred CEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCC--ceEEecCCCCceEEE
Q 000268 256 RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL--PISVLRGHTAAVTAI 333 (1757)
Q Consensus 256 ~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~--~l~~l~gH~~~VtsL 333 (1757)
-+||++|.|.+|++|...+|.+.++++...+.|..+.+.|+++.||+++.- .||+||+.++. ++.++.+|+..|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEE
Confidence 479999999999999999999999999888999999999999999998765 79999999874 689999999999999
Q ss_pred EecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCC
Q 000268 334 AFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD 413 (1757)
Q Consensus 334 afSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~D 413 (1757)
.|..+|. .+++|+.||+++|||++...+.+.+ .+...|+++..+|+...|++|..+
T Consensus 90 gF~~dgr---WMyTgseDgt~kIWdlR~~~~qR~~---------------------~~~spVn~vvlhpnQteLis~dqs 145 (311)
T KOG0315|consen 90 GFQCDGR---WMYTGSEDGTVKIWDLRSLSCQRNY---------------------QHNSPVNTVVLHPNQTELISGDQS 145 (311)
T ss_pred EEeecCe---EEEecCCCceEEEEeccCcccchhc---------------------cCCCCcceEEecCCcceEEeecCC
Confidence 9999997 9999999999999999985544433 255779999999999999999999
Q ss_pred ceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeE
Q 000268 414 TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSA 493 (1757)
Q Consensus 414 G~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI 493 (1757)
|.|+|||+....+... .+......|.++...|+| .+++.+...|..
T Consensus 146 g~irvWDl~~~~c~~~--------liPe~~~~i~sl~v~~dg--------------------------sml~a~nnkG~c 191 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTHE--------LIPEDDTSIQSLTVMPDG--------------------------SMLAAANNKGNC 191 (311)
T ss_pred CcEEEEEccCCccccc--------cCCCCCcceeeEEEcCCC--------------------------cEEEEecCCccE
Confidence 9999999976432211 122234678899999887 689999999999
Q ss_pred EEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCC-
Q 000268 494 IIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG- 572 (1757)
Q Consensus 494 ~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tg- 572 (1757)
.+|++-+... .....++..+..|.+.+..+.+|||+++||+++.|.+++||+..+.
T Consensus 192 yvW~l~~~~~-----------------------~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 192 YVWRLLNHQT-----------------------ASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred EEEEccCCCc-----------------------cccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence 9999875220 0112455567889999999999999999999999999999999987
Q ss_pred ceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCcceEEEEEc
Q 000268 573 SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFS 634 (1757)
Q Consensus 573 kll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~VtslafS 634 (1757)
++...+++|...++..+||. ++.+|++|+.|+.+++|++..++.++.+.+|....++++..
T Consensus 249 kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 249 KLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred eeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 77778999999999999999 88999999999999999999999999999998888777653
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=309.34 Aligned_cols=311 Identities=23% Similarity=0.351 Sum_probs=274.5
Q ss_pred ccccceeEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCce
Q 000268 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCI 308 (1757)
Q Consensus 229 ~~~~~k~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGt 308 (1757)
.+....+.+.+.||..+|+.+.|+|+-..+|+++.|++|++||..+|++...++||...|.+|+|+..|++||+++.|-.
T Consensus 94 wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~ 173 (406)
T KOG0295|consen 94 WIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLS 173 (406)
T ss_pred cCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccc
Confidence 34455667789999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred EEEEECCC-CCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCC
Q 000268 309 IRVWRLPD-GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSS 387 (1757)
Q Consensus 309 IrVWDl~t-g~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~ 387 (1757)
+.+||..+ .++++.+.+|...|.+++|-|.+. +|++++.|.+|+.|++.++-++.++.
T Consensus 174 ~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd---~ilS~srD~tik~We~~tg~cv~t~~------------------ 232 (406)
T KOG0295|consen 174 AKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGD---HILSCSRDNTIKAWECDTGYCVKTFP------------------ 232 (406)
T ss_pred hhheeHHHHHHHHHHhcCcccceeeEEEEecCC---eeeecccccceeEEecccceeEEecc------------------
Confidence 99999987 578888999999999999999986 99999999999999999998887763
Q ss_pred CCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCC
Q 000268 388 AGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSK 467 (1757)
Q Consensus 388 ~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~ 467 (1757)
+|...|..+..+.||.++|+++.|.+|++|-+.+ ......+..|+.+|.+++|.|....+.......
T Consensus 233 --~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t---------~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~-- 299 (406)
T KOG0295|consen 233 --GHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVAT---------KQCKAELREHEHPVECIAWAPESSYPSISEATG-- 299 (406)
T ss_pred --CchHhEEEEEecCCeeEEEecCCCceEEEEEecc---------chhhhhhhccccceEEEEecccccCcchhhccC--
Confidence 5777899999999999999999999999999866 334567899999999999998753221111100
Q ss_pred CCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEE
Q 000268 468 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 547 (1757)
Q Consensus 468 ~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVa 547 (1757)
.-.....+++++.|++|++||+.+ +..+..+.+|...|..++
T Consensus 300 ---------~~~~~~~l~s~SrDktIk~wdv~t-----------------------------g~cL~tL~ghdnwVr~~a 341 (406)
T KOG0295|consen 300 ---------STNGGQVLGSGSRDKTIKIWDVST-----------------------------GMCLFTLVGHDNWVRGVA 341 (406)
T ss_pred ---------CCCCccEEEeecccceEEEEeccC-----------------------------CeEEEEEecccceeeeeE
Confidence 001346899999999999999997 345677889999999999
Q ss_pred EcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000268 548 WSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1757)
Q Consensus 548 fSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl 612 (1757)
|+|.|+||+++..|++++|||+.++++++++..|..-|+++.|+. +.-+++||+-|.++++|..
T Consensus 342 f~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~-~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 342 FSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCC-CCceEEeccccceeeeeec
Confidence 999999999999999999999999999999999999999999988 5568899999999999964
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-31 Score=294.64 Aligned_cols=294 Identities=23% Similarity=0.392 Sum_probs=253.7
Q ss_pred eeEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecC-CCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEE
Q 000268 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSME-TAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1757)
Q Consensus 234 k~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~-tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVW 312 (1757)
.++..+.||.+.|+++.|+|+|.+||||+.|..|.+|++. .-+....+++|.+.|..+.|.+|+..|++++.|.+|+.|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 4456689999999999999999999999999999999964 445667788999999999999999999999999999999
Q ss_pred ECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCC
Q 000268 313 RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1757)
Q Consensus 313 Dl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~ 392 (1757)
|+++|+.++.+++|..-|+++. |...+..++.+++.||++++||++....++++. ..
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~--p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~---------------------~k 174 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLD--PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE---------------------NK 174 (338)
T ss_pred ecccceeeehhccccceeeecC--ccccCCeEEEecCCCceEEEEeecccchhhccc---------------------cc
Confidence 9999999999999999999998 544455688999999999999999877666552 35
Q ss_pred cceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCC
Q 000268 393 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 472 (1757)
Q Consensus 393 ~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~ 472 (1757)
.++++++|...+..+++|+-|+.|++||++. ......+.||.+.|+.+..++.+
T Consensus 175 yqltAv~f~d~s~qv~sggIdn~ikvWd~r~---------~d~~~~lsGh~DtIt~lsls~~g----------------- 228 (338)
T KOG0265|consen 175 YQLTAVGFKDTSDQVISGGIDNDIKVWDLRK---------NDGLYTLSGHADTITGLSLSRYG----------------- 228 (338)
T ss_pred eeEEEEEecccccceeeccccCceeeecccc---------CcceEEeecccCceeeEEeccCC-----------------
Confidence 5699999999999999999999999999976 45678999999999999999987
Q ss_pred cccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCC----CCeeEEEE
Q 000268 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP----RGVNMIVW 548 (1757)
Q Consensus 473 ~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~----~~VtsVaf 548 (1757)
..+++-+.|.++++||++.... ....+..+.+|. .....++|
T Consensus 229 ---------s~llsnsMd~tvrvwd~rp~~p-------------------------~~R~v~if~g~~hnfeknlL~csw 274 (338)
T KOG0265|consen 229 ---------SFLLSNSMDNTVRVWDVRPFAP-------------------------SQRCVKIFQGHIHNFEKNLLKCSW 274 (338)
T ss_pred ---------CccccccccceEEEEEecccCC-------------------------CCceEEEeecchhhhhhhcceeec
Confidence 6899999999999999984110 111223333332 23567799
Q ss_pred cCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000268 549 SLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1757)
Q Consensus 549 SPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWD 611 (1757)
||+++++.+|+.|..+++||......+..+.||.+.|.+++|+| ...++.+++.|.+|.+=.
T Consensus 275 sp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp-~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 275 SPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP-TEPIILSCSSDKTIYLGE 336 (338)
T ss_pred cCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC-CCcEEEEeccCceeEeec
Confidence 99999999999999999999999899999999999999999999 677888999999998743
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.6e-30 Score=293.83 Aligned_cols=288 Identities=31% Similarity=0.553 Sum_probs=251.8
Q ss_pred EEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECC
Q 000268 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP 315 (1757)
Q Consensus 236 l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~ 315 (1757)
+++|.+|.+.|++++|+|++++|++|+.||.|++|++.++.....+..|...+..+.|++++++|++++.+|.|++|++.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 45688999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred CCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcce
Q 000268 316 DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 395 (1757)
Q Consensus 316 tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V 395 (1757)
+++.+..+..|...|.++.|++++. ++++++.+|.|.+||+.+++....+. .+...+
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~--------------------~~~~~i 138 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGR---ILSSSSRDKTIKVWDVETGKCLTTLR--------------------GHTDWV 138 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCC---EEEEecCCCeEEEEECCCcEEEEEec--------------------cCCCcE
Confidence 9888899999999999999999865 77777779999999998766444331 356679
Q ss_pred EEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCccc
Q 000268 396 FCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475 (1757)
Q Consensus 396 ~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~ 475 (1757)
.+++|+|++.++++++.++.|++||+.+ ...+..+..|...|.++.|++++
T Consensus 139 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~---------~~~~~~~~~~~~~i~~~~~~~~~-------------------- 189 (289)
T cd00200 139 NSVAFSPDGTFVASSSQDGTIKLWDLRT---------GKCVATLTGHTGEVNSVAFSPDG-------------------- 189 (289)
T ss_pred EEEEEcCcCCEEEEEcCCCcEEEEEccc---------cccceeEecCccccceEEECCCc--------------------
Confidence 9999999999999888899999999964 33455667888899999999875
Q ss_pred ccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEE
Q 000268 476 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFV 555 (1757)
Q Consensus 476 ~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~L 555 (1757)
..+++++.+|.|.+||+.+.+ ....+..+...+.+++|++++.++
T Consensus 190 ------~~l~~~~~~~~i~i~d~~~~~-----------------------------~~~~~~~~~~~i~~~~~~~~~~~~ 234 (289)
T cd00200 190 ------EKLLSSSSDGTIKLWDLSTGK-----------------------------CLGTLRGHENGVNSVAFSPDGYLL 234 (289)
T ss_pred ------CEEEEecCCCcEEEEECCCCc-----------------------------eecchhhcCCceEEEEEcCCCcEE
Confidence 578888889999999998522 122223566689999999999999
Q ss_pred EEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000268 556 LAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1757)
Q Consensus 556 aSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWD 611 (1757)
++++.||.|++|++.+++.+..+.+|...|.+++|+| ++.+|++++.||.|++|+
T Consensus 235 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 235 ASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP-DGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECC-CCCEEEEecCCCeEEecC
Confidence 9888899999999999999999999999999999999 677889999999999996
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.5e-31 Score=295.40 Aligned_cols=294 Identities=23% Similarity=0.398 Sum_probs=252.0
Q ss_pred cccceeEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceE
Q 000268 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCII 309 (1757)
Q Consensus 230 ~~~~k~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtI 309 (1757)
-..+++.+.+.||.+.|.||++.|...+|+||+.|++|+|||+.+|++..++.||-..|..++||+--.||++++.|+.|
T Consensus 138 HapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~V 217 (460)
T KOG0285|consen 138 HAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQV 217 (460)
T ss_pred cCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCee
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCC
Q 000268 310 RVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 389 (1757)
Q Consensus 310 rVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~ 389 (1757)
+.||++..+.++.+.||-..|.|++.+|.-. .|++|+.|.+++|||+++..
T Consensus 218 KCwDLe~nkvIR~YhGHlS~V~~L~lhPTld---vl~t~grDst~RvWDiRtr~-------------------------- 268 (460)
T KOG0285|consen 218 KCWDLEYNKVIRHYHGHLSGVYCLDLHPTLD---VLVTGGRDSTIRVWDIRTRA-------------------------- 268 (460)
T ss_pred EEEechhhhhHHHhccccceeEEEeccccce---eEEecCCcceEEEeeecccc--------------------------
Confidence 9999999999999999999999999999765 78888888888888876543
Q ss_pred CCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCC
Q 000268 390 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 469 (1757)
Q Consensus 390 ~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~ 469 (1757)
.+..+.||...|..+.+.|..
T Consensus 269 ---------------------------------------------~V~~l~GH~~~V~~V~~~~~d-------------- 289 (460)
T KOG0285|consen 269 ---------------------------------------------SVHVLSGHTNPVASVMCQPTD-------------- 289 (460)
T ss_pred ---------------------------------------------eEEEecCCCCcceeEEeecCC--------------
Confidence 233455677777777666532
Q ss_pred CCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEc
Q 000268 470 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWS 549 (1757)
Q Consensus 470 ~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafS 549 (1757)
..+++|+.|++|++||++.++ ....+..|...|.+++..
T Consensus 290 ------------pqvit~S~D~tvrlWDl~agk-----------------------------t~~tlt~hkksvral~lh 328 (460)
T KOG0285|consen 290 ------------PQVITGSHDSTVRLWDLRAGK-----------------------------TMITLTHHKKSVRALCLH 328 (460)
T ss_pred ------------CceEEecCCceEEEeeeccCc-----------------------------eeEeeecccceeeEEecC
Confidence 477778888888888777433 334456688889999999
Q ss_pred CCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-------
Q 000268 550 LDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE------- 622 (1757)
Q Consensus 550 PDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~------- 622 (1757)
|....+|+++.| .|+-|++..|..++.+.+|...|++++... + .++++|+..|.|.+||..+|-..+.+.
T Consensus 329 P~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~ns-D-~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGS 405 (460)
T KOG0285|consen 329 PKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNS-D-GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGS 405 (460)
T ss_pred CchhhhhccCCc-cceeccCCccchhhccccccceeeeeeecc-C-ceEEEcCCceEEEEEecCcCcccccccccccCCc
Confidence 999999999987 699999999999999999999999999976 3 467799999999999999986655442
Q ss_pred -ecCcceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 000268 623 -ISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 655 (1757)
Q Consensus 623 -~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~ 655 (1757)
.....|++.+|...|..|++|..|.+|.+|.-.
T Consensus 406 l~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 406 LESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred cccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 123478999999999999999999999999854
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-30 Score=295.49 Aligned_cols=293 Identities=18% Similarity=0.323 Sum_probs=243.5
Q ss_pred eeEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCC---eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEE
Q 000268 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA---YCLASCRGHEGDITDLAVSSNNALVASASNDCIIR 310 (1757)
Q Consensus 234 k~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg---~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIr 310 (1757)
+..+.|..|++.|+-+.||++|+||||++.|.+..||.+... ++.+++.+|..+|..+.||||.++|++|+.+..+.
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS 294 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence 445678899999999999999999999999999999988543 45788999999999999999999999999999999
Q ss_pred EEECCCCCceEEec-CCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCC
Q 000268 311 VWRLPDGLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 389 (1757)
Q Consensus 311 VWDl~tg~~l~~l~-gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~ 389 (1757)
+||+.+|.....+. +|...+.+++|.||+. .+++|+.|++|..||+.... ..... .
T Consensus 295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~---~~V~Gs~dr~i~~wdlDgn~-~~~W~-------------------g 351 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGF---RFVTGSPDRTIIMWDLDGNI-LGNWE-------------------G 351 (519)
T ss_pred eccCCcchhhhhcccCcCCCcceeEEccCCc---eeEecCCCCcEEEecCCcch-hhccc-------------------c
Confidence 99999998887774 4568899999999997 89999999999999997543 22110 1
Q ss_pred CCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCC
Q 000268 390 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 469 (1757)
Q Consensus 390 ~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~ 469 (1757)
.....|.+++.++||+++++.+.|..|++|+..+... ..+.....+|++++.+.++
T Consensus 352 vr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d----------r~lise~~~its~~iS~d~-------------- 407 (519)
T KOG0293|consen 352 VRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD----------RGLISEEQPITSFSISKDG-------------- 407 (519)
T ss_pred cccceeEEEEEcCCCcEEEEEecccceeeechhhhhh----------hccccccCceeEEEEcCCC--------------
Confidence 1234599999999999999999999999999854211 1134456789999999886
Q ss_pred CCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCC--eeEEE
Q 000268 470 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRG--VNMIV 547 (1757)
Q Consensus 470 ~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~--VtsVa 547 (1757)
.++++.-.+..+.+||+...+ .+..+.+|... |-.-|
T Consensus 408 ------------k~~LvnL~~qei~LWDl~e~~-----------------------------lv~kY~Ghkq~~fiIrSC 446 (519)
T KOG0293|consen 408 ------------KLALVNLQDQEIHLWDLEENK-----------------------------LVRKYFGHKQGHFIIRSC 446 (519)
T ss_pred ------------cEEEEEcccCeeEEeecchhh-----------------------------HHHHhhcccccceEEEec
Confidence 577788889999999998533 22334455443 22334
Q ss_pred Ec-CCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 000268 548 WS-LDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614 (1757)
Q Consensus 548 fS-PDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~t 614 (1757)
|. .+..++++|+.|+.|+||+..+|+++.++.||...|+||+|+|.+..++|+||.||+|+||....
T Consensus 447 Fgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 447 FGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 54 45589999999999999999999999999999999999999999999999999999999998753
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-30 Score=302.62 Aligned_cols=363 Identities=19% Similarity=0.295 Sum_probs=289.8
Q ss_pred eEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEEC
Q 000268 235 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 314 (1757)
Q Consensus 235 ~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl 314 (1757)
..++|..|...|.||.|+|...+++++-.+|.|.||+.+|...++.+.-..-+|++..|-.-.+++++|+.|..|+||+.
T Consensus 5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence 34567779999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred CCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcc
Q 000268 315 PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1757)
Q Consensus 315 ~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~ 394 (1757)
.++..+..+..|..-|.+|+.+|... ++++++.|-+|++||.+.+-.. .....+|.+.
T Consensus 85 nt~ekV~~FeAH~DyIR~iavHPt~P---~vLtsSDDm~iKlW~we~~wa~-------------------~qtfeGH~Hy 142 (794)
T KOG0276|consen 85 NTGEKVKTFEAHSDYIRSIAVHPTLP---YVLTSSDDMTIKLWDWENEWAC-------------------EQTFEGHEHY 142 (794)
T ss_pred ccceeeEEeeccccceeeeeecCCCC---eEEecCCccEEEEeeccCceee-------------------eeEEcCcceE
Confidence 99999999999999999999999987 9999999999999999765322 2234579999
Q ss_pred eEEEEECC-CCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCc
Q 000268 395 IFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1757)
Q Consensus 395 V~slafSp-dG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~ 473 (1757)
|.+++|+| |.+.||+++-|++|+||.+.. ..+..++.+|...|+++.+-+.+
T Consensus 143 VMqv~fnPkD~ntFaS~sLDrTVKVWslgs---------~~~nfTl~gHekGVN~Vdyy~~g------------------ 195 (794)
T KOG0276|consen 143 VMQVAFNPKDPNTFASASLDRTVKVWSLGS---------PHPNFTLEGHEKGVNCVDYYTGG------------------ 195 (794)
T ss_pred EEEEEecCCCccceeeeeccccEEEEEcCC---------CCCceeeeccccCcceEEeccCC------------------
Confidence 99999999 668999999999999999954 33567889999999999998765
Q ss_pred ccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCC
Q 000268 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 553 (1757)
Q Consensus 474 ~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~ 553 (1757)
...+|++|+.|.+|+|||..+. .+++.+.+|...|..++|.|.-.
T Consensus 196 ------dkpylIsgaDD~tiKvWDyQtk-----------------------------~CV~TLeGHt~Nvs~v~fhp~lp 240 (794)
T KOG0276|consen 196 ------DKPYLISGADDLTIKVWDYQTK-----------------------------SCVQTLEGHTNNVSFVFFHPELP 240 (794)
T ss_pred ------CcceEEecCCCceEEEeecchH-----------------------------HHHHHhhcccccceEEEecCCCc
Confidence 2359999999999999999863 35566788999999999999999
Q ss_pred EEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC----------CceEEE---
Q 000268 554 FVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE----------GIPIRI--- 620 (1757)
Q Consensus 554 ~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~t----------g~~l~~--- 620 (1757)
.|++|+.||+++||+..+-++..++.-.-+.|+||+..+ +...++.|...|.|.| .+.. |+.+..
T Consensus 241 iiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k-~~~~i~vG~Deg~i~v-~lgreeP~vsMd~~gKIiwa~~~ 318 (794)
T KOG0276|consen 241 IIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHK-GDGKIAVGFDEGSVTV-KLGREEPAVSMDSNGKIIWAVHS 318 (794)
T ss_pred EEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecC-CCCeEEEeccCCcEEE-EccCCCCceeecCCccEEEEcCc
Confidence 999999999999999999999998888888999999988 4455666665554432 2221 111110
Q ss_pred ---------Ee-----------------ecCcc--eEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc-ccccccceeecC
Q 000268 621 ---------YE-----------------ISRFR--LVDGKFSPDGASIILSDDVGQLYILNTGQGES-QKDAKYDQFFLG 671 (1757)
Q Consensus 621 ---------l~-----------------~~~~~--VtslafSPDGk~LAsgs~DG~I~IWdl~tGe~-~~~~~~~~~fs~ 671 (1757)
+. -+... ...++-||+|++++++++ |.-.||..-.-+. .-..-.+..|..
T Consensus 319 ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~Vcgd-GEyiIyTala~RnK~fG~~~eFvw~~ 397 (794)
T KOG0276|consen 319 EIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGD-GEYIIYTALALRNKAFGSGLEFVWAA 397 (794)
T ss_pred eeeeeeceeccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEecC-ccEEEEEeeehhhcccccceeEEEcC
Confidence 00 00111 124678999998887654 7777775321111 111223456777
Q ss_pred C-CccEEEccCCce
Q 000268 672 D-YRPLVQDTYGNV 684 (1757)
Q Consensus 672 D-~r~Li~d~~g~v 684 (1757)
| ....++.+++.+
T Consensus 398 dsne~avRes~~~v 411 (794)
T KOG0276|consen 398 DSNEFAVRESNGNV 411 (794)
T ss_pred CCCeEEEEecCCce
Confidence 7 445556656554
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=320.09 Aligned_cols=309 Identities=24% Similarity=0.383 Sum_probs=256.9
Q ss_pred eEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEEC
Q 000268 235 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 314 (1757)
Q Consensus 235 ~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl 314 (1757)
+..++..-...|+|+.|++|+..||.|-.|..|++|.+... .++.+++ ...+ ..+=+.+.|-.+.+.|.
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~-~~~l---------~~~d~~sad~~~~~~D~ 438 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKD-ASDL---------SNIDTESADVDVDMLDD 438 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchh-hhccccc-hhhh---------ccccccccchhhhhccc
Confidence 44555555677999999999999999999999999999754 3334432 1111 12224455555777887
Q ss_pred CCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcc
Q 000268 315 PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1757)
Q Consensus 315 ~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~ 394 (1757)
..+.....+.||.++|..+.|+|+.+ +|++++.|++||+|.+.+..++-.. .+|..+
T Consensus 439 ~~~~~~~~L~GH~GPVyg~sFsPd~r---fLlScSED~svRLWsl~t~s~~V~y--------------------~GH~~P 495 (707)
T KOG0263|consen 439 DSSGTSRTLYGHSGPVYGCSFSPDRR---FLLSCSEDSSVRLWSLDTWSCLVIY--------------------KGHLAP 495 (707)
T ss_pred cCCceeEEeecCCCceeeeeeccccc---ceeeccCCcceeeeecccceeEEEe--------------------cCCCcc
Confidence 77878888999999999999999987 9999999999999999987654433 468899
Q ss_pred eEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcc
Q 000268 395 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 474 (1757)
Q Consensus 395 V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~ 474 (1757)
|+.+.|+|.|-+||+++.|++.++|.... ..+++.+.+|-..|.|+.|.|+.
T Consensus 496 VwdV~F~P~GyYFatas~D~tArLWs~d~---------~~PlRifaghlsDV~cv~FHPNs------------------- 547 (707)
T KOG0263|consen 496 VWDVQFAPRGYYFATASHDQTARLWSTDH---------NKPLRIFAGHLSDVDCVSFHPNS------------------- 547 (707)
T ss_pred eeeEEecCCceEEEecCCCceeeeeeccc---------CCchhhhcccccccceEEECCcc-------------------
Confidence 99999999999999999999999999854 56788899999999999999997
Q ss_pred cccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCE
Q 000268 475 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRF 554 (1757)
Q Consensus 475 ~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~ 554 (1757)
.++++||.|.+|++||+.+ +..++.+.+|.++|++++|||+|++
T Consensus 548 -------~Y~aTGSsD~tVRlWDv~~-----------------------------G~~VRiF~GH~~~V~al~~Sp~Gr~ 591 (707)
T KOG0263|consen 548 -------NYVATGSSDRTVRLWDVST-----------------------------GNSVRIFTGHKGPVTALAFSPCGRY 591 (707)
T ss_pred -------cccccCCCCceEEEEEcCC-----------------------------CcEEEEecCCCCceEEEEEcCCCce
Confidence 7999999999999999986 4456778899999999999999999
Q ss_pred EEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc------------------
Q 000268 555 VLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI------------------ 616 (1757)
Q Consensus 555 LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~------------------ 616 (1757)
|++|+.||.|.|||+.+|+++..+.+|++.|++|.||. ++.+||+||.|++|++||+..-.
T Consensus 592 LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~-dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~ 670 (707)
T KOG0263|consen 592 LASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSR-DGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQE 670 (707)
T ss_pred EeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEec-CCCEEEecCCCCeEEEEEchhhccccccccccccccccccc
Confidence 99999999999999999999999999999999999999 78899999999999999986422
Q ss_pred ------eEEEEeecCcceEEEEEcCCCCEEEE
Q 000268 617 ------PIRIYEISRFRLVDGKFSPDGASIIL 642 (1757)
Q Consensus 617 ------~l~~l~~~~~~VtslafSPDGk~LAs 642 (1757)
++.+|.....+|..+.|.--.-.|++
T Consensus 671 ~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~ 702 (707)
T KOG0263|consen 671 NNASSLLLGSFYTKNTPVVGLHFTRRNLLLAV 702 (707)
T ss_pred CCCCcceeeeeeecCceEEEEEEeccceeEEe
Confidence 34444445556666666665544443
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=306.08 Aligned_cols=477 Identities=17% Similarity=0.183 Sum_probs=335.7
Q ss_pred cCccccccceeEEEE--ccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 000268 225 KPSTMVQKMQNIKRV--RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVAS 302 (1757)
Q Consensus 225 ~~~~~~~~~k~l~tL--~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLAS 302 (1757)
...|++.++...+.| ..-...|+|+.-+++.-.||.|-.||.|+||+..++..+.++.||...|+++.|...|..||+
T Consensus 45 vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaS 124 (888)
T KOG0306|consen 45 VNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLAS 124 (888)
T ss_pred EeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEee
Confidence 345666666333332 234468999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCC
Q 000268 303 ASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 382 (1757)
Q Consensus 303 gS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~ 382 (1757)
|+.|+.|.|||+-...-+..+.||...|+.+-|....+ .|++++.|+.|++||+.+..|..+..
T Consensus 125 GskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~---~lvS~sKDs~iK~WdL~tqhCf~Thv------------- 188 (888)
T KOG0306|consen 125 GSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDS---FLVSVSKDSMIKFWDLETQHCFETHV------------- 188 (888)
T ss_pred cCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCe---EEEEeccCceEEEEecccceeeeEEe-------------
Confidence 99999999999987777889999999999999998655 89999999999999999988877663
Q ss_pred CCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCC---Ccceee-ecCCCCCceEEEEccCcccc
Q 000268 383 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQP---NHEIDV-LSGHENDVNYVQFSGCAVAS 458 (1757)
Q Consensus 383 ~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~---~~~i~~-l~gH~~~V~sLafSpdg~~s 458 (1757)
.|.+.++.+++.+ +.+++++.|+.++||++....-...... .+.... .....+..-.+...++
T Consensus 189 -------d~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s---- 255 (888)
T KOG0306|consen 189 -------DHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFS---- 255 (888)
T ss_pred -------cccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCc----
Confidence 4778899999987 7899999999999999933211000000 000000 0000111111111111
Q ss_pred ccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCC--------------cc------------------
Q 000268 459 RFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSH--------------PK------------------ 506 (1757)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~--------------~~------------------ 506 (1757)
+.++++-+.|..+.++.+.+.... ..
T Consensus 256 ----------------------~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r 313 (888)
T KOG0306|consen 256 ----------------------DRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKR 313 (888)
T ss_pred ----------------------ccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHH
Confidence 112222233333333332221000 00
Q ss_pred -----------cccc-----------------cccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEE
Q 000268 507 -----------AARW-----------------TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA 558 (1757)
Q Consensus 507 -----------~~~w-----------------~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSG 558 (1757)
...| ..-+.+.. .......+.......+.+|...|.++++|.+...+++|
T Consensus 314 ~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~--s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg 391 (888)
T KOG0306|consen 314 LETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLEN--SGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASG 391 (888)
T ss_pred HHheechhheeEEEEEecCCcceeEEEeecCceEEEEecc--CCCCCccccccceeeeccchhheeEEEeecCceeeeec
Confidence 0000 00001111 00000111222335567899999999999999888887
Q ss_pred ecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCcceEEEEEcCCCC
Q 000268 559 IMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGA 638 (1757)
Q Consensus 559 s~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk 638 (1757)
+. +.|+||+..++++++++... .+.+..|.| +++++++|...|.+.|||+.+...+.++..|.+.|++++.+||++
T Consensus 392 a~-~SikiWn~~t~kciRTi~~~--y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~ 467 (888)
T KOG0306|consen 392 AG-ESIKIWNRDTLKCIRTITCG--YILASKFVP-GDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNK 467 (888)
T ss_pred CC-CcEEEEEccCcceeEEeccc--cEEEEEecC-CCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCC
Confidence 65 68999999999999999743 788999999 889999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCeEEEEECCC-----Ccccc-------------ccccceeecCCCccEEEccCCceeecccccccCcCCCCC
Q 000268 639 SIILSDDVGQLYILNTGQ-----GESQK-------------DAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQD 700 (1757)
Q Consensus 639 ~LAsgs~DG~I~IWdl~t-----Ge~~~-------------~~~~~~~fs~D~r~Li~d~~g~vlD~~tql~phl~~l~~ 700 (1757)
.+++|+.|.+|++|++.- |...+ .-.....++||++.|+..--.+.+.. -.+-.+.
T Consensus 468 g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkV-----yflDtlK- 541 (888)
T KOG0306|consen 468 GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKV-----YFLDTLK- 541 (888)
T ss_pred ceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEE-----EEeccee-
Confidence 999999999999999742 11101 11122378999998875543321110 0000111
Q ss_pred cccCCCCCCCCCcchhhhhcccccccceEECCCCCeEEEeeCCCCCCceEeeccCCcccccC--CCccccceeeeCCCCC
Q 000268 701 PLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMID--PLPEFIDVMDWEPENE 778 (1757)
Q Consensus 701 ~L~D~~~~p~p~~~Q~l~~~r~~~v~~lAfSPDG~~LAvg~d~s~~~~v~l~~l~~~~~l~~--plp~~i~~~~~sPDg~ 778 (1757)
-+..| -||.+.|.++..|||+..++++ +.+..+.+|.|.-++..-. ...+.+.++.|-|+.-
T Consensus 542 ------------FflsL-YGHkLPV~smDIS~DSklivTg---SADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~ 605 (888)
T KOG0306|consen 542 ------------FFLSL-YGHKLPVLSMDISPDSKLIVTG---SADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTH 605 (888)
T ss_pred ------------eeeee-cccccceeEEeccCCcCeEEec---cCCCceEEeccccchhhhhhhcccCceeEEEEcccce
Confidence 12223 3788889999999999999999 9999999999976654422 3446678888988754
Q ss_pred cc
Q 000268 779 VQ 780 (1757)
Q Consensus 779 ~l 780 (1757)
.+
T Consensus 606 ~F 607 (888)
T KOG0306|consen 606 LF 607 (888)
T ss_pred eE
Confidence 43
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-29 Score=286.56 Aligned_cols=288 Identities=26% Similarity=0.438 Sum_probs=251.9
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEE
Q 000268 278 LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIW 357 (1757)
Q Consensus 278 l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIW 357 (1757)
++++.+|.+.|.+++|+|++++|++++.+|.|++|++.++.....+..|...+..+.|+|++. .|++++.+|.|.+|
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~~~~~~~~i~i~ 78 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT---YLASGSSDKTIRLW 78 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCC---EEEEEcCCCeEEEE
Confidence 346778999999999999999999999999999999999988889999999999999999986 89999999999999
Q ss_pred ecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCccee
Q 000268 358 DARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEID 437 (1757)
Q Consensus 358 Dl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~ 437 (1757)
++..++....+. .+...+.+++|++++.++++++.+|.|.+|++.+ .....
T Consensus 79 ~~~~~~~~~~~~--------------------~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~~ 129 (289)
T cd00200 79 DLETGECVRTLT--------------------GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET---------GKCLT 129 (289)
T ss_pred EcCcccceEEEe--------------------ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC---------cEEEE
Confidence 998765444331 3556799999999999898888899999999964 33556
Q ss_pred eecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCccccccccccccc
Q 000268 438 VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLK 517 (1757)
Q Consensus 438 ~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~ 517 (1757)
.+..|...|.++.|+|++ ..+++++.||.|.+||+.+.+
T Consensus 130 ~~~~~~~~i~~~~~~~~~--------------------------~~l~~~~~~~~i~i~d~~~~~--------------- 168 (289)
T cd00200 130 TLRGHTDWVNSVAFSPDG--------------------------TFVASSSQDGTIKLWDLRTGK--------------- 168 (289)
T ss_pred EeccCCCcEEEEEEcCcC--------------------------CEEEEEcCCCcEEEEEccccc---------------
Confidence 667899999999999864 577777779999999987532
Q ss_pred CCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcE
Q 000268 518 VPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRI 597 (1757)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~l 597 (1757)
....+..+...|.+++|+|+++.|++++.++.|++||+.+++.+..+..|...|.+++|+| ++.+
T Consensus 169 --------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~ 233 (289)
T cd00200 169 --------------CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYL 233 (289)
T ss_pred --------------cceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcC-CCcE
Confidence 2233345667899999999999999999999999999999999999989999999999999 5788
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000268 598 AMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 653 (1757)
Q Consensus 598 LaSgs~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWd 653 (1757)
+++++.||.|++|++.++..+..+..+...|.+++|+|++.+|++++.||.|.+|+
T Consensus 234 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 234 LASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 88888899999999999999999988888999999999999999999999999995
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-31 Score=308.53 Aligned_cols=299 Identities=22% Similarity=0.362 Sum_probs=255.1
Q ss_pred cccceeEEEEccCCCCEEEEEECC-CCCEEEEEcCCceEEEEecCC-CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCc
Q 000268 230 VQKMQNIKRVRGHRNAVYCAIFDR-SGRYVITGSDDRLVKIWSMET-AYCLASCRGHEGDITDLAVSSNNALVASASNDC 307 (1757)
Q Consensus 230 ~~~~k~l~tL~GH~~~V~~VaFSP-DG~~LATGS~DGtIkIWDl~t-g~~l~tL~gH~~~VtsLafSPDg~lLASgS~DG 307 (1757)
+-.-+.++++.||+..|+++.|.| .+.+|++|+.|+.|+||++-. +.+++++.+|..+|.+++|+.+|..+++++.|+
T Consensus 201 ~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~ 280 (503)
T KOG0282|consen 201 YLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDR 280 (503)
T ss_pred eccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecce
Confidence 334567899999999999999999 999999999999999999976 999999999999999999999999999999999
Q ss_pred eEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCC
Q 000268 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSS 387 (1757)
Q Consensus 308 tIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~ 387 (1757)
.|++||+++|+++..+. -...++|+.|.|++. +.+++|+.|+.|+.||++++++++.+.
T Consensus 281 ~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~--n~fl~G~sd~ki~~wDiRs~kvvqeYd------------------ 339 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQ--NIFLVGGSDKKIRQWDIRSGKVVQEYD------------------ 339 (503)
T ss_pred eeeeeccccceEEEEEe-cCCCceeeecCCCCC--cEEEEecCCCcEEEEeccchHHHHHHH------------------
Confidence 99999999999998886 456789999999984 489999999999999999999877663
Q ss_pred CCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCC
Q 000268 388 AGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSK 467 (1757)
Q Consensus 388 ~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~ 467 (1757)
.|-+.|..+.|-++|+.+++.+.|++++||+.+.+- +.+.+. ..+.....++...|++
T Consensus 340 --~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v------~ik~i~--~~~~hsmP~~~~~P~~------------ 397 (503)
T KOG0282|consen 340 --RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPV------PIKNIA--DPEMHTMPCLTLHPNG------------ 397 (503)
T ss_pred --hhhhheeeeEEccCCceEeeeccCccEEEEEcCCCc------cchhhc--chhhccCcceecCCCC------------
Confidence 367789999999999999999999999999996532 122222 2233445677777775
Q ss_pred CCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCC--CCeeE
Q 000268 468 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP--RGVNM 545 (1757)
Q Consensus 468 ~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~--~~Vts 545 (1757)
..++.-+.|..|.|+.+...- ......++.+|. +.-..
T Consensus 398 --------------~~~~aQs~dN~i~ifs~~~~~--------------------------r~nkkK~feGh~vaGys~~ 437 (503)
T KOG0282|consen 398 --------------KWFAAQSMDNYIAIFSTVPPF--------------------------RLNKKKRFEGHSVAGYSCQ 437 (503)
T ss_pred --------------CeehhhccCceEEEEeccccc--------------------------ccCHhhhhcceeccCceee
Confidence 688888999999999765311 112223344443 34567
Q ss_pred EEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000268 546 IVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1757)
Q Consensus 546 VafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWD 611 (1757)
+.|||||++|++|..||.+.+||..+-+++..+++|.+.+..+.|+|.....+||++.||.|++|+
T Consensus 438 v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 438 VDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 899999999999999999999999999999999999999999999998889999999999999996
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.1e-30 Score=295.41 Aligned_cols=307 Identities=23% Similarity=0.388 Sum_probs=260.3
Q ss_pred cCCCCeEEEEEcCCCC-EEEEEeCCceEEEEECCC--C--CceEEec------C----CCCceEEEEecCCCCceEEEEE
Q 000268 283 GHEGDITDLAVSSNNA-LVASASNDCIIRVWRLPD--G--LPISVLR------G----HTAAVTAIAFSPRPGSVYQLLS 347 (1757)
Q Consensus 283 gH~~~VtsLafSPDg~-lLASgS~DGtIrVWDl~t--g--~~l~~l~------g----H~~~VtsLafSPdg~~~~~LaS 347 (1757)
.|..+|.+++|+|-.. +|++|+.|-+.++|++.. . .....|+ + ....|++++|+.+|. .||+
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~---~Lat 252 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT---LLAT 252 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC---eEEE
Confidence 3999999999999766 999999999999999864 1 1111111 1 235799999999998 9999
Q ss_pred EeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCC
Q 000268 348 SSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTD 427 (1757)
Q Consensus 348 gs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~ 427 (1757)
|+.||.+++|+..... +. .+..|.++|.++.|+..|.+|++++.|+++.+||..++
T Consensus 253 G~~~G~~riw~~~G~l-~~--------------------tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g--- 308 (524)
T KOG0273|consen 253 GSEDGEARIWNKDGNL-IS--------------------TLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG--- 308 (524)
T ss_pred eecCcEEEEEecCchh-hh--------------------hhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc---
Confidence 9999999999976432 22 23468999999999999999999999999999999653
Q ss_pred CCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCccc
Q 000268 428 DSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKA 507 (1757)
Q Consensus 428 ~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~ 507 (1757)
...+.+.-|..+-..|.|-. .+.|++++.||.|.++.+..
T Consensus 309 ------~~~q~f~~~s~~~lDVdW~~---------------------------~~~F~ts~td~~i~V~kv~~------- 348 (524)
T KOG0273|consen 309 ------TVKQQFEFHSAPALDVDWQS---------------------------NDEFATSSTDGCIHVCKVGE------- 348 (524)
T ss_pred ------eEEEeeeeccCCccceEEec---------------------------CceEeecCCCceEEEEEecC-------
Confidence 34556667776655566654 46899999999999998763
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEE
Q 000268 508 ARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYV 587 (1757)
Q Consensus 508 ~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~Vts 587 (1757)
..|...+.+|.+.|.++.|.|.|.+|++++.|++++||........+.|.+|...|+.
T Consensus 349 ----------------------~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t 406 (524)
T KOG0273|consen 349 ----------------------DRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYT 406 (524)
T ss_pred ----------------------CCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceee
Confidence 4567778899999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCC--------cEEEEEeCCCcEEEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc
Q 000268 588 LDVHPFNP--------RIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGES 659 (1757)
Q Consensus 588 LafSPdd~--------~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~tGe~ 659 (1757)
+.|+|.++ ..+++++.|++|++||+..|.++++|..|..+|.+++|||+|+|||+|+.||.|.||++.+++.
T Consensus 407 ~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l 486 (524)
T KOG0273|consen 407 IKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKL 486 (524)
T ss_pred EeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhe
Confidence 99999643 5888999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccccc-----cceeecCCCccEEE
Q 000268 660 QKDAK-----YDQFFLGDYRPLVQ 678 (1757)
Q Consensus 660 ~~~~~-----~~~~fs~D~r~Li~ 678 (1757)
.+... .++.|+-+|..|..
T Consensus 487 ~~s~~~~~~Ifel~Wn~~G~kl~~ 510 (524)
T KOG0273|consen 487 VKSYQGTGGIFELCWNAAGDKLGA 510 (524)
T ss_pred eEeecCCCeEEEEEEcCCCCEEEE
Confidence 76443 45567777766653
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-29 Score=274.38 Aligned_cols=294 Identities=22% Similarity=0.378 Sum_probs=248.2
Q ss_pred ceeEEEEccCCCCEEEEEECCC-CCEEEEEcCCceEEEEecCC---CeEEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCc
Q 000268 233 MQNIKRVRGHRNAVYCAIFDRS-GRYVITGSDDRLVKIWSMET---AYCLASCR-GHEGDITDLAVSSNNALVASASNDC 307 (1757)
Q Consensus 233 ~k~l~tL~GH~~~V~~VaFSPD-G~~LATGS~DGtIkIWDl~t---g~~l~tL~-gH~~~VtsLafSPDg~lLASgS~DG 307 (1757)
+-.++++.||.+.|..++|+|- |..||||+.|..|+||+... ..+...+. +|...|+++||+|.|++||+|+.|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 4567889999999999999998 99999999999999999874 34444443 7999999999999999999999999
Q ss_pred eEEEEECCCC--CceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCC
Q 000268 308 IIRVWRLPDG--LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS 385 (1757)
Q Consensus 308 tIrVWDl~tg--~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~ 385 (1757)
++.||.-..+ +++.++.||...|.|++|+++|. +||+++.|..|-||.+..+..... .
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~---~LATCSRDKSVWiWe~deddEfec-----------------~ 143 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGN---YLATCSRDKSVWIWEIDEDDEFEC-----------------I 143 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCCC---EEEEeeCCCeEEEEEecCCCcEEE-----------------E
Confidence 9999986654 78899999999999999999998 999999999999999885543222 2
Q ss_pred CCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccC
Q 000268 386 SSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 465 (1757)
Q Consensus 386 ~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~ 465 (1757)
..+.+|...|..+.|+|...+|++++.|++|++|.-.. ......+..+.+|...|.+++|.+.|
T Consensus 144 aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~------dddW~c~~tl~g~~~TVW~~~F~~~G---------- 207 (312)
T KOG0645|consen 144 AVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED------DDDWECVQTLDGHENTVWSLAFDNIG---------- 207 (312)
T ss_pred eeeccccccccEEEEcCCcceeEEeccCCeEEEEeecC------CCCeeEEEEecCccceEEEEEecCCC----------
Confidence 33567899999999999999999999999999998742 24467889999999999999999987
Q ss_pred CCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeE
Q 000268 466 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNM 545 (1757)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~Vts 545 (1757)
..|++++.|++++||...+.- ...|...+..
T Consensus 208 ----------------~rl~s~sdD~tv~Iw~~~~~~---------------------------------~~~~sr~~Y~ 238 (312)
T KOG0645|consen 208 ----------------SRLVSCSDDGTVSIWRLYTDL---------------------------------SGMHSRALYD 238 (312)
T ss_pred ----------------ceEEEecCCcceEeeeeccCc---------------------------------chhcccceEe
Confidence 699999999999999754210 1235677888
Q ss_pred EEEcCCCCEEEEEecCCeEEEEECCCC------ceE-EEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000268 546 IVWSLDNRFVLAAIMDCRICVWNAADG------SLV-HSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1757)
Q Consensus 546 VafSPDG~~LaSGs~DG~I~IWDl~tg------kll-~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~ 613 (1757)
++|. ...|++++.|+.|+||....+ +++ ..-..|...|++++|.|....+|++|+.||.|++|.+.
T Consensus 239 v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 239 VPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred eeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 9998 568999999999999987642 111 23356888999999999657788999999999999874
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=278.03 Aligned_cols=303 Identities=24% Similarity=0.341 Sum_probs=247.7
Q ss_pred ceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEE
Q 000268 319 PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCC 398 (1757)
Q Consensus 319 ~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sl 398 (1757)
...++.+|.+.|+.++..+.+. ..|++++.|.++.+|++...... ...+...+.+|.+.|..+
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~--~~l~sasrDk~ii~W~L~~dd~~---------------~G~~~r~~~GHsH~v~dv 69 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNS--DILVSASRDKTIIVWKLTSDDIK---------------YGVPVRRLTGHSHFVSDV 69 (315)
T ss_pred eeeeecCCCceEEEEEeecCCC--ceEEEcccceEEEEEEeccCccc---------------cCceeeeeeccceEecce
Confidence 4467899999999999999854 38999999999999998755211 112233455799999999
Q ss_pred EECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccc
Q 000268 399 AFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478 (1757)
Q Consensus 399 afSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~ 478 (1757)
+.++||+++++++.|+++++||+.+ +...+.+.+|...|.+++|+++.
T Consensus 70 ~~s~dg~~alS~swD~~lrlWDl~~---------g~~t~~f~GH~~dVlsva~s~dn----------------------- 117 (315)
T KOG0279|consen 70 VLSSDGNFALSASWDGTLRLWDLAT---------GESTRRFVGHTKDVLSVAFSTDN----------------------- 117 (315)
T ss_pred EEccCCceEEeccccceEEEEEecC---------CcEEEEEEecCCceEEEEecCCC-----------------------
Confidence 9999999999999999999999976 45678899999999999999985
Q ss_pred cCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCC--CCCeeEEEEcCC--CCE
Q 000268 479 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT--PRGVNMIVWSLD--NRF 554 (1757)
Q Consensus 479 ~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h--~~~VtsVafSPD--G~~ 554 (1757)
..+++|+.|.+|++|++... ....+..+ ...|+|+.|+|+ ..+
T Consensus 118 ---~qivSGSrDkTiklwnt~g~------------------------------ck~t~~~~~~~~WVscvrfsP~~~~p~ 164 (315)
T KOG0279|consen 118 ---RQIVSGSRDKTIKLWNTLGV------------------------------CKYTIHEDSHREWVSCVRFSPNESNPI 164 (315)
T ss_pred ---ceeecCCCcceeeeeeeccc------------------------------EEEEEecCCCcCcEEEEEEcCCCCCcE
Confidence 79999999999999998742 12222222 567999999998 789
Q ss_pred EEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCcceEEEEEc
Q 000268 555 VLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFS 634 (1757)
Q Consensus 555 LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~VtslafS 634 (1757)
|++++.|++|++||+.+.++.+.+.||++.++.+++|| |+.+.++|+.||.+.+||+..++.+..+. +...|.+++|+
T Consensus 165 Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fs 242 (315)
T KOG0279|consen 165 IVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFS 242 (315)
T ss_pred EEEccCCceEEEEccCCcchhhccccccccEEEEEECC-CCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEec
Confidence 99999999999999999999999999999999999999 78899999999999999999999998886 77789999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCccccccccceeecCCCccEEEccCCceeecccccccCcCCCCCcccCCCCCCCCCcc
Q 000268 635 PDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPY 714 (1757)
Q Consensus 635 PDGk~LAsgs~DG~I~IWdl~tGe~~~~~~~~~~fs~D~r~Li~d~~g~vlD~~tql~phl~~l~~~L~D~~~~p~p~~~ 714 (1757)
|+.-+|+.+...+ |+||++.++..+..+..+.. | +.... ...
T Consensus 243 pnrywL~~at~~s-IkIwdl~~~~~v~~l~~d~~-------------g----------~s~~~--------------~~~ 284 (315)
T KOG0279|consen 243 PNRYWLCAATATS-IKIWDLESKAVVEELKLDGI-------------G----------PSSKA--------------GDP 284 (315)
T ss_pred CCceeEeeccCCc-eEEEeccchhhhhhcccccc-------------c----------ccccc--------------CCc
Confidence 9988888776644 99999999877765443310 0 00000 011
Q ss_pred hhhhhcccccccceEECCCCCeEEEeeCCCCCCceEeeccC
Q 000268 715 QTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLA 755 (1757)
Q Consensus 715 Q~l~~~r~~~v~~lAfSPDG~~LAvg~d~s~~~~v~l~~l~ 755 (1757)
.-..+|||+||..|..| -.++.+++|.+.
T Consensus 285 ---------~clslaws~dG~tLf~g---~td~~irv~qv~ 313 (315)
T KOG0279|consen 285 ---------ICLSLAWSADGQTLFAG---YTDNVIRVWQVA 313 (315)
T ss_pred ---------EEEEEEEcCCCcEEEee---ecCCcEEEEEee
Confidence 12479999999999999 566778888763
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-29 Score=301.11 Aligned_cols=368 Identities=20% Similarity=0.269 Sum_probs=288.4
Q ss_pred ccccccCCcchhhhccccccCccccccceeEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCC
Q 000268 206 GFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHE 285 (1757)
Q Consensus 206 ~~~~~~~~~~l~s~~~~~a~~~~~~~~~k~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~ 285 (1757)
++++|+..|.+.++..+..+.-|++.-..++.+|..|.++|..++|+|++.++++|++|..|+||+..+.+++.+|.||-
T Consensus 14 glsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHl 93 (1202)
T KOG0292|consen 14 GLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHL 93 (1202)
T ss_pred ceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhcccc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCcc
Q 000268 286 GDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS 365 (1757)
Q Consensus 286 ~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~ 365 (1757)
..|+.+.|++.-.+|+++|.|.+|+||++.+++++..++||...|.|..|+|... .+++++-|.+|+|||+..-+..
T Consensus 94 DYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED---lIVSaSLDQTVRVWDisGLRkk 170 (1202)
T KOG0292|consen 94 DYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED---LIVSASLDQTVRVWDISGLRKK 170 (1202)
T ss_pred ceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccc---eEEEecccceEEEEeecchhcc
Confidence 9999999999999999999999999999999999999999999999999999776 8999999999999999754322
Q ss_pred ceeec--CCCCcc------ccC-CCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcce
Q 000268 366 PRIYI--PRPSDA------VAG-RNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 436 (1757)
Q Consensus 366 ~~i~l--~~~~~~------~~g-~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i 436 (1757)
..-.. +..... ..| ..........+|...|..++|+|.-.+|++|+.|..|++|.+...+ .-.+
T Consensus 171 ~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK-------aWEv 243 (1202)
T KOG0292|consen 171 NKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK-------AWEV 243 (1202)
T ss_pred CCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc-------ceee
Confidence 11100 000000 000 1111234567899999999999999999999999999999985322 3467
Q ss_pred eeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccc
Q 000268 437 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHL 516 (1757)
Q Consensus 437 ~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l 516 (1757)
.+..||.+.|.++-|.|.. +.+++.+.|++|+|||+..++
T Consensus 244 DtcrgH~nnVssvlfhp~q--------------------------~lIlSnsEDksirVwDm~kRt-------------- 283 (1202)
T KOG0292|consen 244 DTCRGHYNNVSSVLFHPHQ--------------------------DLILSNSEDKSIRVWDMTKRT-------------- 283 (1202)
T ss_pred hhhhcccCCcceEEecCcc--------------------------ceeEecCCCccEEEEeccccc--------------
Confidence 7889999999999999975 799999999999999998643
Q ss_pred cCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCc
Q 000268 517 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR 596 (1757)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~ 596 (1757)
.++.+.......+.++-.|...++++|.. +-+.||-+..- .++.++ + ++.
T Consensus 284 ---------------~v~tfrrendRFW~laahP~lNLfAAgHD-sGm~VFkleRE----------rpa~~v--~--~n~ 333 (1202)
T KOG0292|consen 284 ---------------SVQTFRRENDRFWILAAHPELNLFAAGHD-SGMIVFKLERE----------RPAYAV--N--GNG 333 (1202)
T ss_pred ---------------ceeeeeccCCeEEEEEecCCcceeeeecC-CceEEEEEccc----------CceEEE--c--CCE
Confidence 23334445667899999999998887764 44556655322 223333 2 333
Q ss_pred EEEEEeCCCcEEEEeCCCCceEE--EEeec---CcceEEEEEcCCCCEEE-EEe-CCCeEEEEECC
Q 000268 597 IAMSAGYDGKTIVWDIWEGIPIR--IYEIS---RFRLVDGKFSPDGASII-LSD-DVGQLYILNTG 655 (1757)
Q Consensus 597 lLaSgs~DG~IrIWDl~tg~~l~--~l~~~---~~~VtslafSPDGk~LA-sgs-~DG~I~IWdl~ 655 (1757)
++.. .|..|+-+|+.+.+-+. .+... ..++.++.++|....+. ++. ..|..-++.+.
T Consensus 334 LfYv--kd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ip 397 (1202)
T KOG0292|consen 334 LFYV--KDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIP 397 (1202)
T ss_pred EEEE--ccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEec
Confidence 4433 38899999998854433 33322 24778899999765444 443 34455555553
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-29 Score=271.54 Aligned_cols=296 Identities=15% Similarity=0.265 Sum_probs=257.5
Q ss_pred chhhhccccccCccccccceeEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCe--EEEEEecCCCCeEEEE
Q 000268 215 SIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY--CLASCRGHEGDITDLA 292 (1757)
Q Consensus 215 ~l~s~~~~~a~~~~~~~~~k~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~--~l~tL~gH~~~VtsLa 292 (1757)
.|.+++|...+..|...++.+.++++...+.|+.+.+.|+++.||+|+. ..|++||+.++. ++.++.+|...|+++.
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVg 90 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVG 90 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEE
Confidence 3567789999999999999999999999999999999999999999876 579999998865 5889999999999999
Q ss_pred EcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCC
Q 000268 293 VSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR 372 (1757)
Q Consensus 293 fSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~ 372 (1757)
|..+|+++++|+.||+++|||++...+-+.+. |..+|+++..+|+.. .|++|..+|.|++||+....+...+.
T Consensus 91 F~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQt---eLis~dqsg~irvWDl~~~~c~~~li--- 163 (311)
T KOG0315|consen 91 FQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQT---ELISGDQSGNIRVWDLGENSCTHELI--- 163 (311)
T ss_pred EeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcc---eEEeecCCCcEEEEEccCCccccccC---
Confidence 99999999999999999999999866666665 779999999999876 89999999999999999876655442
Q ss_pred CCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEc
Q 000268 373 PSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 452 (1757)
Q Consensus 373 ~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafS 452 (1757)
......|.+++..|||..++.+...|..++|++-+.. ...+..++..+..|.+-+..+.++
T Consensus 164 ----------------Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~---~~s~l~P~~k~~ah~~~il~C~lS 224 (311)
T KOG0315|consen 164 ----------------PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQ---TASELEPVHKFQAHNGHILRCLLS 224 (311)
T ss_pred ----------------CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCC---ccccceEhhheecccceEEEEEEC
Confidence 1223568999999999999999999999999997632 234455677789999999999999
Q ss_pred cCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCC
Q 000268 453 GCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGP 532 (1757)
Q Consensus 453 pdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~ 532 (1757)
|++ .+|++++.|.+++||+..+- ...
T Consensus 225 Pd~--------------------------k~lat~ssdktv~iwn~~~~----------------------------~kl 250 (311)
T KOG0315|consen 225 PDV--------------------------KYLATCSSDKTVKIWNTDDF----------------------------FKL 250 (311)
T ss_pred CCC--------------------------cEEEeecCCceEEEEecCCc----------------------------eee
Confidence 997 79999999999999998851 112
Q ss_pred ceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEe
Q 000268 533 RQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVH 591 (1757)
Q Consensus 533 ~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafS 591 (1757)
...+.+|...+..++||.||+||++|+.|+.+++|++..++.++...||.....|++..
T Consensus 251 e~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 251 ELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred EEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 34566788899999999999999999999999999999999999999998887777653
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-29 Score=315.58 Aligned_cols=292 Identities=31% Similarity=0.525 Sum_probs=253.5
Q ss_pred eEEEEccC-CCCEEEEEECCCCCEEEEEcCCceEEEEecCCCe--EEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEE
Q 000268 235 NIKRVRGH-RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY--CLASCRGHEGDITDLAVSSNNALVASASNDCIIRV 311 (1757)
Q Consensus 235 ~l~tL~GH-~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~--~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrV 311 (1757)
....+.+| ...|.|+.|+++|++|++++.++.|++|++.++. .+..+.+|...|.+++|+|++++|++++.|++|+|
T Consensus 150 ~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiri 229 (456)
T KOG0266|consen 150 LEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRI 229 (456)
T ss_pred eeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEE
Confidence 35666665 8899999999999999999999999999998888 78888899999999999999999999999999999
Q ss_pred EEC-CCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCC
Q 000268 312 WRL-PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGP 390 (1757)
Q Consensus 312 WDl-~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~ 390 (1757)
||+ ..+..++++.+|...|++++|+|++. ++++|+.|++|+|||++++++...+ ..
T Consensus 230 wd~~~~~~~~~~l~gH~~~v~~~~f~p~g~---~i~Sgs~D~tvriWd~~~~~~~~~l--------------------~~ 286 (456)
T KOG0266|consen 230 WDLKDDGRNLKTLKGHSTYVTSVAFSPDGN---LLVSGSDDGTVRIWDVRTGECVRKL--------------------KG 286 (456)
T ss_pred eeccCCCeEEEEecCCCCceEEEEecCCCC---EEEEecCCCcEEEEeccCCeEEEee--------------------ec
Confidence 999 56689999999999999999999996 9999999999999999998877666 35
Q ss_pred CCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCC--ceEEEEccCccccccccccCCCC
Q 000268 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEND--VNYVQFSGCAVASRFSLADSSKE 468 (1757)
Q Consensus 391 ~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~--V~sLafSpdg~~s~~~~~~~~~~ 468 (1757)
|...|.+++|+++|.+|++++.|+.|+|||+.++... .+..+.++... ++.++|+|++
T Consensus 287 hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~-------~~~~~~~~~~~~~~~~~~fsp~~------------- 346 (456)
T KOG0266|consen 287 HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL-------CLKLLSGAENSAPVTSVQFSPNG------------- 346 (456)
T ss_pred cCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee-------eeecccCCCCCCceeEEEECCCC-------------
Confidence 8889999999999999999999999999999774310 23455555555 9999999987
Q ss_pred CCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCC---CeeE
Q 000268 469 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR---GVNM 545 (1757)
Q Consensus 469 ~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~---~Vts 545 (1757)
.++++++.|+.+++||+..... .....+|.. .+.+
T Consensus 347 -------------~~ll~~~~d~~~~~w~l~~~~~-----------------------------~~~~~~~~~~~~~~~~ 384 (456)
T KOG0266|consen 347 -------------KYLLSASLDRTLKLWDLRSGKS-----------------------------VGTYTGHSNLVRCIFS 384 (456)
T ss_pred -------------cEEEEecCCCeEEEEEccCCcc-----------------------------eeeecccCCcceeEec
Confidence 7999999999999999996432 222223333 3455
Q ss_pred EEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCC-CCCeEEEEEecCCCcEEEEEe--CCCcEEEEeC
Q 000268 546 IVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH-TESTYVLDVHPFNPRIAMSAG--YDGKTIVWDI 612 (1757)
Q Consensus 546 VafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH-~~~VtsLafSPdd~~lLaSgs--~DG~IrIWDl 612 (1757)
..+++.+.++++|+.|+.|++|++.++..+..+.+| ...|..+.++| ...++++++ .|+.|++|..
T Consensus 385 ~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~-~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 385 PTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHP-TENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred ccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCC-CcCeeeecCcCCCceEEEecC
Confidence 566889999999999999999999999999999999 88999999999 778888887 7999999975
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=296.86 Aligned_cols=285 Identities=19% Similarity=0.290 Sum_probs=251.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCC
Q 000268 284 HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ 363 (1757)
Q Consensus 284 H~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~ 363 (1757)
-...|..|.|.|+|+.|++|+..|.+.+|+..+-..-..++.|..+|.++.|++++. .+++|+.+|.|++|+..-..
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~---wmiSgD~gG~iKyWqpnmnn 171 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGT---WMISGDKGGMIKYWQPNMNN 171 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCC---EEEEcCCCceEEecccchhh
Confidence 356799999999999999999999999999865555556789999999999999997 99999999999999986543
Q ss_pred ccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCC
Q 000268 364 FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE 443 (1757)
Q Consensus 364 ~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~ 443 (1757)
... + ...|...|.+++|+|+...|++++.||+|+|||...+ +.-..+.||.
T Consensus 172 Vk~-~-------------------~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~---------kee~vL~GHg 222 (464)
T KOG0284|consen 172 VKI-I-------------------QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP---------KEERVLRGHG 222 (464)
T ss_pred hHH-h-------------------hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC---------chhheeccCC
Confidence 211 1 1235588999999999999999999999999999653 3445679999
Q ss_pred CCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCC
Q 000268 444 NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPM 523 (1757)
Q Consensus 444 ~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~ 523 (1757)
-.|.+++|.|.. ..|++|+.|..|++||.++
T Consensus 223 wdVksvdWHP~k--------------------------gLiasgskDnlVKlWDprS----------------------- 253 (464)
T KOG0284|consen 223 WDVKSVDWHPTK--------------------------GLIASGSKDNLVKLWDPRS----------------------- 253 (464)
T ss_pred CCcceeccCCcc--------------------------ceeEEccCCceeEeecCCC-----------------------
Confidence 999999999974 6899999999999999997
Q ss_pred CCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeC
Q 000268 524 PPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGY 603 (1757)
Q Consensus 524 ~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~ 603 (1757)
+.++..+..|...|..+.|++++.+|++++.|..++++|+++.+.+.++++|...|++++|+|-...+|++||.
T Consensus 254 ------g~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~ 327 (464)
T KOG0284|consen 254 ------GSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGS 327 (464)
T ss_pred ------cchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccC
Confidence 34556677899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCceEEEEe-ecCcceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 000268 604 DGKTIVWDIWEGIPIRIYE-ISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 655 (1757)
Q Consensus 604 DG~IrIWDl~tg~~l~~l~-~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~ 655 (1757)
||.|..|.+...+++..+. .|...|++++|+|=|..|++|+.|.++++|.-.
T Consensus 328 Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 328 DGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred CCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 9999999998566665553 677899999999999999999999999999753
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-29 Score=282.96 Aligned_cols=310 Identities=20% Similarity=0.308 Sum_probs=262.6
Q ss_pred CccccccceeEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 000268 226 PSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN 305 (1757)
Q Consensus 226 ~~~~~~~~k~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~ 305 (1757)
-.|...++..+..+.||...|+|+.||.+|.+||||..+|.|+||.+.+|.....+...-..|.=|.|+|-+.+|++|+.
T Consensus 89 flW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~ 168 (399)
T KOG0296|consen 89 FLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST 168 (399)
T ss_pred EEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecC
Confidence 34666777888999999999999999999999999999999999999999999888777788999999999999999999
Q ss_pred CceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCC
Q 000268 306 DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS 385 (1757)
Q Consensus 306 DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~ 385 (1757)
||.|.+|.+.++...+.+.||..++++-.|.|+|+ .++++..||+|++|++.+++.+..+..
T Consensus 169 DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK---r~~tgy~dgti~~Wn~ktg~p~~~~~~--------------- 230 (399)
T KOG0296|consen 169 DGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK---RILTGYDDGTIIVWNPKTGQPLHKITQ--------------- 230 (399)
T ss_pred CCcEEEEECCCcceeeEecCCCCCcccccccCCCc---eEEEEecCceEEEEecCCCceeEEecc---------------
Confidence 99999999999889999999999999999999998 899999999999999999987666521
Q ss_pred CCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccC
Q 000268 386 SSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 465 (1757)
Q Consensus 386 ~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~ 465 (1757)
.......++.++..+..++.|..++.+++-+..+++......+ ........+...+.+|.+.|....
T Consensus 231 ----~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~-~~~~l~~~~e~~~esve~~~~ss~-------- 297 (399)
T KOG0296|consen 231 ----AEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG-TVPELKPSQEELDESVESIPSSSK-------- 297 (399)
T ss_pred ----cccCcCCccccccccceeEeccCCccEEEEccccceEEEecCC-CCccccccchhhhhhhhhcccccc--------
Confidence 1133466888888999999999999999888876554322221 112223356666677766654310
Q ss_pred CCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeE
Q 000268 466 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNM 545 (1757)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~Vts 545 (1757)
=.+.++|+-||+|.|||+...+ .+....|..+|+.
T Consensus 298 ---------------lpL~A~G~vdG~i~iyD~a~~~------------------------------~R~~c~he~~V~~ 332 (399)
T KOG0296|consen 298 ---------------LPLAACGSVDGTIAIYDLAAST------------------------------LRHICEHEDGVTK 332 (399)
T ss_pred ---------------cchhhcccccceEEEEecccch------------------------------hheeccCCCceEE
Confidence 1478999999999999998522 3445678889999
Q ss_pred EEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000268 546 IVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1757)
Q Consensus 546 VafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~ 613 (1757)
+.|-+ ..+|++++.+|.|++||.++|+++.++.||...|.+++++| +.++++|++.|++.+||++.
T Consensus 333 l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 333 LKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 99998 78999999999999999999999999999999999999999 78899999999999999874
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=292.52 Aligned_cols=523 Identities=16% Similarity=0.169 Sum_probs=335.1
Q ss_pred cccccceeEEEEccCCCCEEEEEECCCCCEEEEEc--CCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 000268 228 TMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGS--DDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN 305 (1757)
Q Consensus 228 ~~~~~~k~l~tL~GH~~~V~~VaFSPDG~~LATGS--~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~ 305 (1757)
....+....+.+..|..+++|||||++|+|+|||- ....++||++..-..+..|..|.-.|+|++|+|.+++|++.+.
T Consensus 63 fn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGs 142 (1080)
T KOG1408|consen 63 FNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGS 142 (1080)
T ss_pred EcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeecc
Confidence 34455566677888999999999999999999984 6778999999998899999999999999999999999997655
Q ss_pred --CceEEEEECCCCCceEEecCCCCceEEEEecCCCC-------------------------------------------
Q 000268 306 --DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPG------------------------------------------- 340 (1757)
Q Consensus 306 --DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~------------------------------------------- 340 (1757)
|-.|.+||+........-+ -...|..++|+.++.
T Consensus 143 QHDMIVnv~dWr~N~~~asnk-iss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~ 221 (1080)
T KOG1408|consen 143 QHDMIVNVNDWRVNSSGASNK-ISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFL 221 (1080)
T ss_pred ccceEEEhhhhhhcccccccc-cceeEEEEEEccCCceeeeeeeeeEEEEEeeccccccCCccccchhhhccccccchhh
Confidence 3455666553211110000 011122222222221
Q ss_pred -----------------------------------------------ceEEEEEEeCCCcEEEEecCCCCccceeecCCC
Q 000268 341 -----------------------------------------------SVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP 373 (1757)
Q Consensus 341 -----------------------------------------------~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~ 373 (1757)
+..+|++|+.+|+|++|+..+-....++..+..
T Consensus 222 avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~ha 301 (1080)
T KOG1408|consen 222 AVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHA 301 (1080)
T ss_pred hhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccc
Confidence 012677777777777777776665555433221
Q ss_pred CccccCCCCCC----CCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEE
Q 000268 374 SDAVAGRNMAP----SSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYV 449 (1757)
Q Consensus 374 ~~~~~g~~~~~----~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sL 449 (1757)
...-......+ .......--...++.|++....|.+...|..++|||++..+. ......+..|...|+.+
T Consensus 302 lg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~k------vgk~~s~lyHS~ciW~V 375 (1080)
T KOG1408|consen 302 LGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNK------VGKCSSMLYHSACIWDV 375 (1080)
T ss_pred cccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEecccccc------ccceeeeeeccceeeee
Confidence 11100000000 011111222345788999999999999999999999986432 23445667899999998
Q ss_pred EEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCccccc-ccccccccCCCC-----CC
Q 000268 450 QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAAR-WTQAYHLKVPPP-----PM 523 (1757)
Q Consensus 450 afSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~-w~~~~~l~~~~~-----~~ 523 (1757)
...|...-. -.........|++|+.||+|++|++....-...... ....-.++.+.. .+
T Consensus 376 e~~p~nv~~---------------~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~ 440 (1080)
T KOG1408|consen 376 ENLPCNVHS---------------PTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIM 440 (1080)
T ss_pred ccccccccC---------------cccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhh
Confidence 877742100 000111235699999999999999986221100000 000000000000 00
Q ss_pred CC--CCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecC--CCcEEE
Q 000268 524 PP--QPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPF--NPRIAM 599 (1757)
Q Consensus 524 ~~--~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPd--d~~lLa 599 (1757)
.. ................++.+++.||+|++||+|..-|.|+||++..-+.+..+.+|...|.|+.|+-- ..++||
T Consensus 441 ~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLA 520 (1080)
T KOG1408|consen 441 HDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLA 520 (1080)
T ss_pred hhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhh
Confidence 00 00111122233445567999999999999999999999999999999999999999999999999742 347999
Q ss_pred EEeCCCcEEEEeCCC-CceEEEEeecCcceEEEEEcCCC--CEEEEEeCCCeEEEEECC---CC--------cccccccc
Q 000268 600 SAGYDGKTIVWDIWE-GIPIRIYEISRFRLVDGKFSPDG--ASIILSDDVGQLYILNTG---QG--------ESQKDAKY 665 (1757)
Q Consensus 600 Sgs~DG~IrIWDl~t-g~~l~~l~~~~~~VtslafSPDG--k~LAsgs~DG~I~IWdl~---tG--------e~~~~~~~ 665 (1757)
+++.|..|.|+|+.. -.+++++.+|...|+++.|.-.| ..+++++.|..|++=-.. .| ..-+...|
T Consensus 521 SasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlY 600 (1080)
T KOG1408|consen 521 SASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLY 600 (1080)
T ss_pred hccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEE
Confidence 999999999999964 35677788888888888887776 566677666555432211 12 11234446
Q ss_pred ceeecCCCccEEEc---cCCceeecccccccCcCCCCCcccCCCCCCCCCcchhhhhcccccccceEECCCCCeEEEeeC
Q 000268 666 DQFFLGDYRPLVQD---TYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPD 742 (1757)
Q Consensus 666 ~~~fs~D~r~Li~d---~~g~vlD~~tql~phl~~l~~~L~D~~~~p~p~~~Q~l~~~r~~~v~~lAfSPDG~~LAvg~d 742 (1757)
+....|..+.++.. .+-++++.+.. +....|-.+ +++.-...-+...|.|.|||+.
T Consensus 601 Dm~Vdp~~k~v~t~cQDrnirif~i~sg-----Kq~k~FKgs--------------~~~eG~lIKv~lDPSgiY~atS-- 659 (1080)
T KOG1408|consen 601 DMAVDPTSKLVVTVCQDRNIRIFDIESG-----KQVKSFKGS--------------RDHEGDLIKVILDPSGIYLATS-- 659 (1080)
T ss_pred EeeeCCCcceEEEEecccceEEEecccc-----ceeeeeccc--------------ccCCCceEEEEECCCccEEEEe--
Confidence 66666666655533 33334442221 110001000 0011112345679999999999
Q ss_pred CCCCCceEeeccCCcccccC--CCccccceeeeCCCCCcccCCCCCcccccccC
Q 000268 743 FSLDQGYQLQPLADLDVMID--PLPEFIDVMDWEPENEVQSDDNDSEYNVAEEY 794 (1757)
Q Consensus 743 ~s~~~~v~l~~l~~~~~l~~--plp~~i~~~~~sPDg~~ls~~~~s~~~~~~~~ 794 (1757)
..+..+-+++..+++.+.. -..++++.|-|++|=+.+.....++.+..|-.
T Consensus 660 -csdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 660 -CSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred -ecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEEC
Confidence 8889999999998887654 35688999999999888877777777766654
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=285.31 Aligned_cols=291 Identities=21% Similarity=0.328 Sum_probs=261.4
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEE
Q 000268 276 YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355 (1757)
Q Consensus 276 ~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIr 355 (1757)
.+.+.+.+|...|+.+-|.|+-.++|+++.|++|++||..+|+..+.++||+..|..|+|+..|. +|++++.|-.+.
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk---~l~tcSsDl~~~ 175 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGK---YLATCSSDLSAK 175 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCcc---EEEecCCccchh
Confidence 34556778999999999999999999999999999999999999999999999999999999987 999999999999
Q ss_pred EEecCCC-CccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCc
Q 000268 356 IWDARYS-QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNH 434 (1757)
Q Consensus 356 IWDl~tg-~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~ 434 (1757)
+||..+. +++. ...+|...|.+++|-|.|.+|++++.|.+|+.|++.+ +.
T Consensus 176 LWd~~~~~~c~k--------------------s~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~t---------g~ 226 (406)
T KOG0295|consen 176 LWDFDTFFRCIK--------------------SLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDT---------GY 226 (406)
T ss_pred heeHHHHHHHHH--------------------HhcCcccceeeEEEEecCCeeeecccccceeEEeccc---------ce
Confidence 9998753 2211 2346788899999999999999999999999999976 56
Q ss_pred ceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccc
Q 000268 435 EIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 514 (1757)
Q Consensus 435 ~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~ 514 (1757)
.+.++.+|...|..++.+.+| ..+++++.|.+|++|-+.++.
T Consensus 227 cv~t~~~h~ewvr~v~v~~DG--------------------------ti~As~s~dqtl~vW~~~t~~------------ 268 (406)
T KOG0295|consen 227 CVKTFPGHSEWVRMVRVNQDG--------------------------TIIASCSNDQTLRVWVVATKQ------------ 268 (406)
T ss_pred eEEeccCchHhEEEEEecCCe--------------------------eEEEecCCCceEEEEEeccch------------
Confidence 789999999999999999887 689999999999999888642
Q ss_pred cccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcC---------------CCCEEEEEecCCeEEEEECCCCceEEEEe
Q 000268 515 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL---------------DNRFVLAAIMDCRICVWNAADGSLVHSLT 579 (1757)
Q Consensus 515 ~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSP---------------DG~~LaSGs~DG~I~IWDl~tgkll~~L~ 579 (1757)
....+..|..+|-+++|.| .+.++++++.|++|++||+.+|.++.+|.
T Consensus 269 -----------------~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ 331 (406)
T KOG0295|consen 269 -----------------CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV 331 (406)
T ss_pred -----------------hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe
Confidence 2334456777788888866 24699999999999999999999999999
Q ss_pred CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 000268 580 GHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 654 (1757)
Q Consensus 580 gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl 654 (1757)
||...|..++|+| +|++|+|+..|++++|||+.+++++.++..|..-++++.|..+-.++++|+-|-.+++|.-
T Consensus 332 ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 332 GHDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cccceeeeeEEcC-CCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999999999 9999999999999999999999999999999999999999999999999999999999963
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-30 Score=292.56 Aligned_cols=281 Identities=21% Similarity=0.371 Sum_probs=242.7
Q ss_pred CCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEE
Q 000268 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISV 322 (1757)
Q Consensus 243 ~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~ 322 (1757)
...|..|.|.|+|++|++|+..|.+.+|+..+-..-..+..|...|++|.|++++.++++|+.+|.|++|+..- ..+..
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~ 174 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKI 174 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhHH
Confidence 46799999999999999999999999999865444445678999999999999999999999999999999753 44455
Q ss_pred ecCCC-CceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEEC
Q 000268 323 LRGHT-AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFN 401 (1757)
Q Consensus 323 l~gH~-~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafS 401 (1757)
+.+|. ..|++++|+|+.. .|++++.||+|+|||....+....+ .+|...|.|+.|+
T Consensus 175 ~~ahh~eaIRdlafSpnDs---kF~t~SdDg~ikiWdf~~~kee~vL--------------------~GHgwdVksvdWH 231 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPNDS---KFLTCSDDGTIKIWDFRMPKEERVL--------------------RGHGWDVKSVDWH 231 (464)
T ss_pred hhHhhhhhhheeccCCCCc---eeEEecCCCeEEEEeccCCchhhee--------------------ccCCCCcceeccC
Confidence 55554 8999999999776 8999999999999998766543332 4688899999999
Q ss_pred CCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCC
Q 000268 402 ANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCH 481 (1757)
Q Consensus 402 pdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~ 481 (1757)
|...+||+|+.|..|++||.++ +.++..+.+|...|..+.|++++
T Consensus 232 P~kgLiasgskDnlVKlWDprS---------g~cl~tlh~HKntVl~~~f~~n~-------------------------- 276 (464)
T KOG0284|consen 232 PTKGLIASGSKDNLVKLWDPRS---------GSCLATLHGHKNTVLAVKFNPNG-------------------------- 276 (464)
T ss_pred CccceeEEccCCceeEeecCCC---------cchhhhhhhccceEEEEEEcCCC--------------------------
Confidence 9999999999999999999987 45678899999999999999987
Q ss_pred CcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCC-CEEEEEec
Q 000268 482 DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN-RFVLAAIM 560 (1757)
Q Consensus 482 ~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG-~~LaSGs~ 560 (1757)
++|+++|.|..++++|+++- ..+..+.+|...|++++|+|-. .+|++|+.
T Consensus 277 N~Llt~skD~~~kv~DiR~m-----------------------------kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~ 327 (464)
T KOG0284|consen 277 NWLLTGSKDQSCKVFDIRTM-----------------------------KELFTYRGHKKDVTSLTWHPLNESLFTSGGS 327 (464)
T ss_pred CeeEEccCCceEEEEehhHh-----------------------------HHHHHhhcchhhheeeccccccccceeeccC
Confidence 79999999999999999852 2345667899999999999965 46778999
Q ss_pred CCeEEEEECCCCceEEEE-eCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000268 561 DCRICVWNAADGSLVHSL-TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1757)
Q Consensus 561 DG~I~IWDl~tgkll~~L-~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl 612 (1757)
||.|..|.+..-+++..+ .+|...|++++|+| =+.+|++|+.|.++++|.-
T Consensus 328 Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hP-lGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 328 DGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHP-LGHILATGSNDRTVRFWTR 379 (464)
T ss_pred CCceEEEeccccccccCCCcccccceeeeeccc-cceeEeecCCCcceeeecc
Confidence 999999999855655554 47999999999999 7799999999999999975
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=308.39 Aligned_cols=280 Identities=20% Similarity=0.299 Sum_probs=236.9
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEE
Q 000268 278 LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIW 357 (1757)
Q Consensus 278 l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIW 357 (1757)
..++..-...++|+.|++|+++||.|..|..|++|.+... .++.+++ ..+.. .+=+.+.|-.+.+.
T Consensus 371 ~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~-------~~~l~------~~d~~sad~~~~~~ 436 (707)
T KOG0263|consen 371 MYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKD-------ASDLS------NIDTESADVDVDML 436 (707)
T ss_pred EEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchh-hhccccc-------hhhhc------cccccccchhhhhc
Confidence 3344444567999999999999999999999999998654 3333332 11111 12233444445555
Q ss_pred ecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCccee
Q 000268 358 DARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEID 437 (1757)
Q Consensus 358 Dl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~ 437 (1757)
|-........ ..+|.++|..+.|+|+.++|++++.|++||+|.+.+ ...+.
T Consensus 437 D~~~~~~~~~--------------------L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t---------~s~~V 487 (707)
T KOG0263|consen 437 DDDSSGTSRT--------------------LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDT---------WSCLV 487 (707)
T ss_pred cccCCceeEE--------------------eecCCCceeeeeecccccceeeccCCcceeeeeccc---------ceeEE
Confidence 5444332222 346999999999999999999999999999999976 45677
Q ss_pred eecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCccccccccccccc
Q 000268 438 VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLK 517 (1757)
Q Consensus 438 ~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~ 517 (1757)
...||..+|+.+.|+|.| -+|||++.|++.++|....
T Consensus 488 ~y~GH~~PVwdV~F~P~G--------------------------yYFatas~D~tArLWs~d~----------------- 524 (707)
T KOG0263|consen 488 IYKGHLAPVWDVQFAPRG--------------------------YYFATASHDQTARLWSTDH----------------- 524 (707)
T ss_pred EecCCCcceeeEEecCCc--------------------------eEEEecCCCceeeeeeccc-----------------
Confidence 788999999999999987 4899999999999998763
Q ss_pred CCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcE
Q 000268 518 VPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRI 597 (1757)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~l 597 (1757)
..+.+.+.+|...|.|+.|.|+..|+++|+.|.+|++||+.+|..++.|.||.++|.+|+||| ++++
T Consensus 525 ------------~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp-~Gr~ 591 (707)
T KOG0263|consen 525 ------------NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSP-CGRY 591 (707)
T ss_pred ------------CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcC-CCce
Confidence 456677889999999999999999999999999999999999999999999999999999999 8999
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 000268 598 AMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 656 (1757)
Q Consensus 598 LaSgs~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~t 656 (1757)
|++|+.||.|+|||+.+|.++..+.+|.+.|.++.||.||..||+|+.|..|.+||+..
T Consensus 592 LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 592 LASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 99999999999999999999999999999999999999999999999999999999864
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-28 Score=288.88 Aligned_cols=294 Identities=18% Similarity=0.260 Sum_probs=264.3
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEec
Q 000268 280 SCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359 (1757)
Q Consensus 280 tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl 359 (1757)
++..++..|.++.|+|...+++++-.+|.|.||+.++...++.+.-..-+|.+..|-+..+ .+++|+.|..|+||+.
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRkn---Wiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKN---WIVTGSDDMQIRVFNY 84 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccc---eEEEecCCceEEEEec
Confidence 4556889999999999999999999999999999999999999998889999999999776 9999999999999999
Q ss_pred CCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeee
Q 000268 360 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVL 439 (1757)
Q Consensus 360 ~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l 439 (1757)
.++..+..+ ..|...|.|++.+|...++++++.|-.|++||... ...+.+.+
T Consensus 85 nt~ekV~~F--------------------eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~--------~wa~~qtf 136 (794)
T KOG0276|consen 85 NTGEKVKTF--------------------EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN--------EWACEQTF 136 (794)
T ss_pred ccceeeEEe--------------------eccccceeeeeecCCCCeEEecCCccEEEEeeccC--------ceeeeeEE
Confidence 999877666 35889999999999999999999999999999964 36788999
Q ss_pred cCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCC
Q 000268 440 SGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVP 519 (1757)
Q Consensus 440 ~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~ 519 (1757)
.||+.-|..++|.|.. .+.+++++-|++|+||.+.+
T Consensus 137 eGH~HyVMqv~fnPkD-------------------------~ntFaS~sLDrTVKVWslgs------------------- 172 (794)
T KOG0276|consen 137 EGHEHYVMQVAFNPKD-------------------------PNTFASASLDRTVKVWSLGS------------------- 172 (794)
T ss_pred cCcceEEEEEEecCCC-------------------------ccceeeeeccccEEEEEcCC-------------------
Confidence 9999999999999975 47899999999999998874
Q ss_pred CCCCCCCCCCCCCceeecCCCCCeeEEEEcCCC--CEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcE
Q 000268 520 PPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN--RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRI 597 (1757)
Q Consensus 520 ~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG--~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~l 597 (1757)
..+...+.+|..+|+||.+-+-| .+|++|+.|.+|+|||.++..|+++|.||...|..+.|+| .--+
T Consensus 173 ----------~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp-~lpi 241 (794)
T KOG0276|consen 173 ----------PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP-ELPI 241 (794)
T ss_pred ----------CCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecC-CCcE
Confidence 33456678999999999997755 5999999999999999999999999999999999999999 6678
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 000268 598 AMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQ 660 (1757)
Q Consensus 598 LaSgs~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~tGe~~ 660 (1757)
++||+.||+++||+..+-++..++.-+-..|++++-.+.+..+++|.+.|.|. ..++.+++.
T Consensus 242 iisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~-v~lgreeP~ 303 (794)
T KOG0276|consen 242 IISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT-VKLGREEPA 303 (794)
T ss_pred EEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE-EEccCCCCc
Confidence 89999999999999999999999988888999999999999999998877664 466666554
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=321.52 Aligned_cols=290 Identities=20% Similarity=0.323 Sum_probs=237.0
Q ss_pred EccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCC----e----EEEEEecCCCCeEEEEEcC-CCCEEEEEeCCceE
Q 000268 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA----Y----CLASCRGHEGDITDLAVSS-NNALVASASNDCII 309 (1757)
Q Consensus 239 L~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg----~----~l~tL~gH~~~VtsLafSP-Dg~lLASgS~DGtI 309 (1757)
+.+|.+.|++++|+|+|++||||+.|+.|+||++.+. . .+..+. +...|.+++|++ ++.+||+++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4569999999999999999999999999999997532 1 222333 356899999987 47899999999999
Q ss_pred EEEECCCCCceEEecCCCCceEEEEecC-CCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCC
Q 000268 310 RVWRLPDGLPISVLRGHTAAVTAIAFSP-RPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 388 (1757)
Q Consensus 310 rVWDl~tg~~l~~l~gH~~~VtsLafSP-dg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~ 388 (1757)
+|||+.+++.+..+.+|.+.|++++|+| ++. +|++|+.||+|++||+.++..+..+.
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~---~L~Sgs~Dg~v~iWd~~~~~~~~~~~------------------- 615 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPT---LLASGSDDGSVKLWSINQGVSIGTIK------------------- 615 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCC---EEEEEcCCCEEEEEECCCCcEEEEEe-------------------
Confidence 9999999999999999999999999997 555 89999999999999999877655442
Q ss_pred CCCCcceEEEEEC-CCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCC
Q 000268 389 GPQSHQIFCCAFN-ANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSK 467 (1757)
Q Consensus 389 ~~~~~~V~slafS-pdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~ 467 (1757)
+...+.++.|+ ++|.+|++|+.||.|++||+++.. ..+..+.+|...|.++.|...
T Consensus 616 --~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~--------~~~~~~~~h~~~V~~v~f~~~------------- 672 (793)
T PLN00181 616 --TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK--------LPLCTMIGHSKTVSYVRFVDS------------- 672 (793)
T ss_pred --cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC--------ccceEecCCCCCEEEEEEeCC-------------
Confidence 12358899995 579999999999999999996532 134567799999999999732
Q ss_pred CCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEE
Q 000268 468 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 547 (1757)
Q Consensus 468 ~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVa 547 (1757)
..|++++.|++|+|||+..... .....++..+.+|...+.+++
T Consensus 673 --------------~~lvs~s~D~~ikiWd~~~~~~-----------------------~~~~~~l~~~~gh~~~i~~v~ 715 (793)
T PLN00181 673 --------------STLVSSSTDNTLKLWDLSMSIS-----------------------GINETPLHSFMGHTNVKNFVG 715 (793)
T ss_pred --------------CEEEEEECCCEEEEEeCCCCcc-----------------------ccCCcceEEEcCCCCCeeEEE
Confidence 5899999999999999874210 001234456677888899999
Q ss_pred EcCCCCEEEEEecCCeEEEEECCCCceEEEE-------------eCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000268 548 WSLDNRFVLAAIMDCRICVWNAADGSLVHSL-------------TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1757)
Q Consensus 548 fSPDG~~LaSGs~DG~I~IWDl~tgkll~~L-------------~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl 612 (1757)
|++++.+|++|+.|+.|+||+...+.++..+ ..|...|.+++|+| ++.+|++|+.||.|+||++
T Consensus 716 ~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~-~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 716 LSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG-QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC-CCCeEEEecCCCcEEEEec
Confidence 9999999999999999999998766544322 23456699999999 6778899999999999996
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-28 Score=262.07 Aligned_cols=286 Identities=23% Similarity=0.365 Sum_probs=232.5
Q ss_pred eeEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEE
Q 000268 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1757)
Q Consensus 234 k~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWD 313 (1757)
+.++.|.+|.++|.++.|+-||+|.+|++.|.+|++|+...|.+++++.+|...|.+++.+.|+..+++|+.|..|.+||
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCc
Q 000268 314 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 393 (1757)
Q Consensus 314 l~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~ 393 (1757)
+.+|+.++.+++|.+.|+.++|..+.. .+++|+.|.+|++||.+.....+.. .+.....
T Consensus 88 V~TGkv~Rr~rgH~aqVNtV~fNeesS---Vv~SgsfD~s~r~wDCRS~s~ePiQ------------------ildea~D 146 (307)
T KOG0316|consen 88 VNTGKVDRRFRGHLAQVNTVRFNEESS---VVASGSFDSSVRLWDCRSRSFEPIQ------------------ILDEAKD 146 (307)
T ss_pred cccCeeeeecccccceeeEEEecCcce---EEEeccccceeEEEEcccCCCCccc------------------hhhhhcC
Confidence 999999999999999999999999876 8999999999999998765432211 1111122
Q ss_pred ceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCc
Q 000268 394 QIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1757)
Q Consensus 394 ~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~ 473 (1757)
.|.++..+ +
T Consensus 147 ~V~Si~v~--~--------------------------------------------------------------------- 155 (307)
T KOG0316|consen 147 GVSSIDVA--E--------------------------------------------------------------------- 155 (307)
T ss_pred ceeEEEec--c---------------------------------------------------------------------
Confidence 23333331 2
Q ss_pred ccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCC
Q 000268 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 553 (1757)
Q Consensus 474 ~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~ 553 (1757)
..|++|+.||+++.||++.+... . --...+|++++||+||+
T Consensus 156 --------heIvaGS~DGtvRtydiR~G~l~-----------------------------s--Dy~g~pit~vs~s~d~n 196 (307)
T KOG0316|consen 156 --------HEIVAGSVDGTVRTYDIRKGTLS-----------------------------S--DYFGHPITSVSFSKDGN 196 (307)
T ss_pred --------cEEEeeccCCcEEEEEeecceee-----------------------------h--hhcCCcceeEEecCCCC
Confidence 24555555666666655532200 0 01235799999999999
Q ss_pred EEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEE--ecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCcc-eEE
Q 000268 554 FVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDV--HPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFR-LVD 630 (1757)
Q Consensus 554 ~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLaf--SPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~-Vts 630 (1757)
.+++++.|++|++.|-.+|+++..++||...-+.+.. .. ....+++|+.||.|.+||+.++..+..+..+... |++
T Consensus 197 c~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~q-sdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~d 275 (307)
T KOG0316|consen 197 CSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQ-SDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTD 275 (307)
T ss_pred EEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecc-cceeEEeccCCceEEEEEeccceeeeeeccCCceeEEe
Confidence 9999999999999999999999999999887665543 33 4578899999999999999999999999877766 789
Q ss_pred EEEcCCCCEEEEEeCCCeEEEE
Q 000268 631 GKFSPDGASIILSDDVGQLYIL 652 (1757)
Q Consensus 631 lafSPDGk~LAsgs~DG~I~IW 652 (1757)
+.+.|.-..|+++...+ +..|
T Consensus 276 l~~hp~~~~f~~A~~~~-~~~~ 296 (307)
T KOG0316|consen 276 LSCHPTMDDFITATGHG-DLFW 296 (307)
T ss_pred eecccCccceeEecCCc-eece
Confidence 99999988777776644 4444
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-30 Score=284.77 Aligned_cols=278 Identities=23% Similarity=0.446 Sum_probs=239.6
Q ss_pred CCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceE
Q 000268 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS 321 (1757)
Q Consensus 242 H~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~ 321 (1757)
....|+|+.+. ...+++|..|.+|+|||..+..++..+.||++.|.|+.|. .+.|++|+.|.+|+|||+++|+++.
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence 45689999986 4479999999999999999999999999999999999985 6699999999999999999999999
Q ss_pred EecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEEC
Q 000268 322 VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFN 401 (1757)
Q Consensus 322 ~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafS 401 (1757)
++-+|...|..+.|+.. ++++++.|.+|.+||+....-+.. ...+.+|...|..+.|+
T Consensus 272 tlihHceaVLhlrf~ng-----~mvtcSkDrsiaVWdm~sps~it~-----------------rrVLvGHrAaVNvVdfd 329 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFSNG-----YMVTCSKDRSIAVWDMASPTDITL-----------------RRVLVGHRAAVNVVDFD 329 (499)
T ss_pred HHhhhcceeEEEEEeCC-----EEEEecCCceeEEEeccCchHHHH-----------------HHHHhhhhhheeeeccc
Confidence 99999999999999874 899999999999999976542211 11234688889999985
Q ss_pred CCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCC
Q 000268 402 ANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCH 481 (1757)
Q Consensus 402 pdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~ 481 (1757)
.++|++++.|.+|++|++.+ ...+..+.+|...|-|+++..
T Consensus 330 --~kyIVsASgDRTikvW~~st---------~efvRtl~gHkRGIAClQYr~---------------------------- 370 (499)
T KOG0281|consen 330 --DKYIVSASGDRTIKVWSTST---------CEFVRTLNGHKRGIACLQYRD---------------------------- 370 (499)
T ss_pred --cceEEEecCCceEEEEeccc---------eeeehhhhcccccceehhccC----------------------------
Confidence 45999999999999999976 557889999999999998863
Q ss_pred CcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecC
Q 000268 482 DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD 561 (1757)
Q Consensus 482 ~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~D 561 (1757)
.++++|+.|.+|++||+..+ ..+..+.+|..-|.++.| |.+.|++|+.|
T Consensus 371 rlvVSGSSDntIRlwdi~~G-----------------------------~cLRvLeGHEeLvRciRF--d~krIVSGaYD 419 (499)
T KOG0281|consen 371 RLVVSGSSDNTIRLWDIECG-----------------------------ACLRVLEGHEELVRCIRF--DNKRIVSGAYD 419 (499)
T ss_pred eEEEecCCCceEEEEecccc-----------------------------HHHHHHhchHHhhhheee--cCceeeecccc
Confidence 58999999999999999863 345567789999999999 67899999999
Q ss_pred CeEEEEECCCCc---------eEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE
Q 000268 562 CRICVWNAADGS---------LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 618 (1757)
Q Consensus 562 G~I~IWDl~tgk---------ll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l 618 (1757)
|+|+|||+.++. ++.++..|++.|+.+.| +...++++++|.+|-|||+.++.+-
T Consensus 420 GkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF---D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 420 GKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF---DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ceEEEEecccccCCcccccchHHHhhhhccceeEEEee---cceEEEeccCCCeEEEEEcCCCCcc
Confidence 999999998753 44566789999999999 5577889999999999999877554
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-27 Score=315.56 Aligned_cols=303 Identities=15% Similarity=0.279 Sum_probs=244.5
Q ss_pred CceEEEEecCCCeEEEEE-----ecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCC----C----ceEEecCCCCce
Q 000268 264 DRLVKIWSMETAYCLASC-----RGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG----L----PISVLRGHTAAV 330 (1757)
Q Consensus 264 DGtIkIWDl~tg~~l~tL-----~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg----~----~l~~l~gH~~~V 330 (1757)
+|.+++|+..+......+ ..|.+.|++++|+|+|++||+|+.|+.|+||++.+. . ++..+. +...|
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 688999998876655443 358999999999999999999999999999997542 1 233333 35689
Q ss_pred EEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECC-CCCEEEE
Q 000268 331 TAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NGTVFVT 409 (1757)
Q Consensus 331 tsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSp-dG~~Las 409 (1757)
.+++|++... .+|++++.||+|++||+.+++.+..+ ..|...|++++|+| ++.+|++
T Consensus 536 ~~l~~~~~~~--~~las~~~Dg~v~lWd~~~~~~~~~~--------------------~~H~~~V~~l~~~p~~~~~L~S 593 (793)
T PLN00181 536 SGICWNSYIK--SQVASSNFEGVVQVWDVARSQLVTEM--------------------KEHEKRVWSIDYSSADPTLLAS 593 (793)
T ss_pred eeEEeccCCC--CEEEEEeCCCeEEEEECCCCeEEEEe--------------------cCCCCCEEEEEEcCCCCCEEEE
Confidence 9999998633 28999999999999999887654443 34778899999997 7899999
Q ss_pred eeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcC
Q 000268 410 GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR 489 (1757)
Q Consensus 410 Gs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~ 489 (1757)
|+.||.|++||+.++ ..+..+..+ ..|.++.|.+.. +..|++|+.
T Consensus 594 gs~Dg~v~iWd~~~~---------~~~~~~~~~-~~v~~v~~~~~~-------------------------g~~latgs~ 638 (793)
T PLN00181 594 GSDDGSVKLWSINQG---------VSIGTIKTK-ANICCVQFPSES-------------------------GRSLAFGSA 638 (793)
T ss_pred EcCCCEEEEEECCCC---------cEEEEEecC-CCeEEEEEeCCC-------------------------CCEEEEEeC
Confidence 999999999999753 234445444 578899986432 268999999
Q ss_pred CCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEEC
Q 000268 490 DGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 569 (1757)
Q Consensus 490 DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl 569 (1757)
||.|++||+++.. .+...+.+|...|.++.|. ++.+|++++.|++|+|||+
T Consensus 639 dg~I~iwD~~~~~----------------------------~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~ 689 (793)
T PLN00181 639 DHKVYYYDLRNPK----------------------------LPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDL 689 (793)
T ss_pred CCeEEEEECCCCC----------------------------ccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeC
Confidence 9999999997522 1233455788899999997 7889999999999999999
Q ss_pred CC------CceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-------------ecCcceEE
Q 000268 570 AD------GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE-------------ISRFRLVD 630 (1757)
Q Consensus 570 ~t------gkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~-------------~~~~~Vts 630 (1757)
.. +.++..+.+|...+.+++|+| ++.+|++|+.|+.|+||+.....++..+. .+...|.+
T Consensus 690 ~~~~~~~~~~~l~~~~gh~~~i~~v~~s~-~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~ 768 (793)
T PLN00181 690 SMSISGINETPLHSFMGHTNVKNFVGLSV-SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISS 768 (793)
T ss_pred CCCccccCCcceEEEcCCCCCeeEEEEcC-CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEE
Confidence 74 367889999999999999999 56799999999999999987765554332 12345899
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEC
Q 000268 631 GKFSPDGASIILSDDVGQLYILNT 654 (1757)
Q Consensus 631 lafSPDGk~LAsgs~DG~I~IWdl 654 (1757)
++|+|+|.+|++|+.+|.|+||++
T Consensus 769 v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 769 VCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEcCCCCeEEEecCCCcEEEEec
Confidence 999999999999999999999986
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-27 Score=288.76 Aligned_cols=440 Identities=16% Similarity=0.205 Sum_probs=341.2
Q ss_pred ccccccCccccccceeEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCC-
Q 000268 220 CYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA- 298 (1757)
Q Consensus 220 ~~~~a~~~~~~~~~k~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~- 298 (1757)
...+....|.+.+.+.+.+++++...|+++.=+|-=..+|.|..+|+|.|+++..++.+.+++...+.|++++|..||.
T Consensus 179 s~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p 258 (910)
T KOG1539|consen 179 SSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNP 258 (910)
T ss_pred ecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCe
Confidence 3344556788899999999999999999999999999999999999999999999999999995569999999999998
Q ss_pred EEEEEeCCceEEEEECCCCCceEEec-CCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccc
Q 000268 299 LVASASNDCIIRVWRLPDGLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAV 377 (1757)
Q Consensus 299 lLASgS~DGtIrVWDl~tg~~l~~l~-gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~ 377 (1757)
+||+|+..|.+.+||++..+.+..+. .|.+.|..+.|.|... .|++++.|..+++|=.+++.-.+++.
T Consensus 259 ~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep---Vl~ta~~DnSlk~~vfD~~dg~pR~L-------- 327 (910)
T KOG1539|consen 259 LLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP---VLVTAGADNSLKVWVFDSGDGVPRLL-------- 327 (910)
T ss_pred eEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc---eEeeccCCCceeEEEeeCCCCcchhe--------
Confidence 66778888999999999888777766 7889999999999876 99999999999999776655443332
Q ss_pred cCCCCCCCCCCCCCCcceEEEEEC-CCCCEEEEeeCCceEEEecCCCCCCCCCCCCC------ccee---eecCCCCCce
Q 000268 378 AGRNMAPSSSAGPQSHQIFCCAFN-ANGTVFVTGSSDTLARVWNACKPNTDDSDQPN------HEID---VLSGHENDVN 447 (1757)
Q Consensus 378 ~g~~~~~~~~~~~~~~~V~slafS-pdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~------~~i~---~l~gH~~~V~ 447 (1757)
....+|..+..|+.|. .+|.++.+++.|++.+.+++............ +.+. .....-.+|.
T Consensus 328 --------R~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~ 399 (910)
T KOG1539|consen 328 --------RSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIV 399 (910)
T ss_pred --------eeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcce
Confidence 2345789999999998 68999999999999999988542211111100 0000 0011122333
Q ss_pred EEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCC
Q 000268 448 YVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQP 527 (1757)
Q Consensus 448 sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~ 527 (1757)
.+++...- ...| .+.+++.-.+..++.|+++.... +.|.- .
T Consensus 400 ~fa~~~~R-------------------E~~W--~Nv~~~h~~~~~~~tW~~~n~~~----G~~~L----~---------- 440 (910)
T KOG1539|consen 400 EFAFENAR-------------------EKEW--DNVITAHKGKRSAYTWNFRNKTS----GRHVL----D---------- 440 (910)
T ss_pred eeecccch-------------------hhhh--cceeEEecCcceEEEEeccCccc----ccEEe----c----------
Confidence 33333210 1112 34566666778899999986431 11110 0
Q ss_pred CCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEE---eCCCCCeEEEEEecCCCcEEEEEeCC
Q 000268 528 PRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL---TGHTESTYVLDVHPFNPRIAMSAGYD 604 (1757)
Q Consensus 528 ~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L---~gH~~~VtsLafSPdd~~lLaSgs~D 604 (1757)
..++......+++++.+++|.+.+.|+..|.|-+|++++|-....+ ..|.++|++++..- -++.+++++.+
T Consensus 441 -----~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~ 514 (910)
T KOG1539|consen 441 -----PKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGAD 514 (910)
T ss_pred -----CccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCc
Confidence 0111123456899999999999999999999999999999999988 58999999999976 56789999999
Q ss_pred CcEEEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCccccccccceeecCCCccEEEccCCce
Q 000268 605 GKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNV 684 (1757)
Q Consensus 605 G~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~tGe~~~~~~~~~~fs~D~r~Li~d~~g~v 684 (1757)
|.+++||..+..++..+. -...+..+..+.....+|++.+|-.|.++|+.+.+..+
T Consensus 515 Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR----------------------- 570 (910)
T KOG1539|consen 515 GILKFWDFKKKVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVR----------------------- 570 (910)
T ss_pred ceEEEEecCCcceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhH-----------------------
Confidence 999999999999888886 44567888888888999999999999999987643221
Q ss_pred eecccccccCcCCCCCcccCCCCCCCCCcchhhhhcccccccceEECCCCCeEEEeeCCCCCCceEeeccCCcccccC-C
Q 000268 685 LDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMID-P 763 (1757)
Q Consensus 685 lD~~tql~phl~~l~~~L~D~~~~p~p~~~Q~l~~~r~~~v~~lAfSPDG~~LAvg~d~s~~~~v~l~~l~~~~~l~~-p 763 (1757)
.+.|+...++.++|||||+||+++ +.+..+++|++.+...+-. .
T Consensus 571 --------------------------------~f~gh~nritd~~FS~DgrWlisa---smD~tIr~wDlpt~~lID~~~ 615 (910)
T KOG1539|consen 571 --------------------------------EFWGHGNRITDMTFSPDGRWLISA---SMDSTIRTWDLPTGTLIDGLL 615 (910)
T ss_pred --------------------------------HhhccccceeeeEeCCCCcEEEEe---ecCCcEEEEeccCcceeeeEe
Confidence 234556667899999999999999 9999999999998875422 4
Q ss_pred CccccceeeeCCCCCcccC
Q 000268 764 LPEFIDVMDWEPENEVQSD 782 (1757)
Q Consensus 764 lp~~i~~~~~sPDg~~ls~ 782 (1757)
++....+|.|+|.|++|+.
T Consensus 616 vd~~~~sls~SPngD~LAT 634 (910)
T KOG1539|consen 616 VDSPCTSLSFSPNGDFLAT 634 (910)
T ss_pred cCCcceeeEECCCCCEEEE
Confidence 5777889999999999983
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-29 Score=280.56 Aligned_cols=276 Identities=24% Similarity=0.405 Sum_probs=238.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCC
Q 000268 284 HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ 363 (1757)
Q Consensus 284 H~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~ 363 (1757)
....|.|+.+ |...+++|..|.+|+|||..+-.++..+.||++.|.|+.|... .|++|+.|.+|++||+.+++
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~r-----viisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDER-----VIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccce-----EEEecCCCceEEEEeccCCc
Confidence 4567999887 4568999999999999999999999999999999999999763 89999999999999999999
Q ss_pred ccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCC
Q 000268 364 FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE 443 (1757)
Q Consensus 364 ~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~ 443 (1757)
++.++. .|...|..+.|+ ..++++++.|.+|.|||+..+. .......+.||.
T Consensus 269 ~l~tli--------------------hHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps------~it~rrVLvGHr 320 (499)
T KOG0281|consen 269 PLNTLI--------------------HHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPT------DITLRRVLVGHR 320 (499)
T ss_pred hhhHHh--------------------hhcceeEEEEEe--CCEEEEecCCceeEEEeccCch------HHHHHHHHhhhh
Confidence 887763 477889999996 3489999999999999997543 244567789999
Q ss_pred CCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCC
Q 000268 444 NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPM 523 (1757)
Q Consensus 444 ~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~ 523 (1757)
..|+.+.|+. .++++++.|.+|++|++.+.
T Consensus 321 AaVNvVdfd~----------------------------kyIVsASgDRTikvW~~st~---------------------- 350 (499)
T KOG0281|consen 321 AAVNVVDFDD----------------------------KYIVSASGDRTIKVWSTSTC---------------------- 350 (499)
T ss_pred hheeeecccc----------------------------ceEEEecCCceEEEEeccce----------------------
Confidence 9999999973 58999999999999999863
Q ss_pred CCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeC
Q 000268 524 PPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGY 603 (1757)
Q Consensus 524 ~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~ 603 (1757)
..+..+.+|..+|-|+.+ .|+++++|+.|.+|++||+..|.+++.+.||..-|.++.| +..-+++|+.
T Consensus 351 -------efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF---d~krIVSGaY 418 (499)
T KOG0281|consen 351 -------EFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGAY 418 (499)
T ss_pred -------eeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee---cCceeeeccc
Confidence 345567789999988876 7899999999999999999999999999999999999999 4566789999
Q ss_pred CCcEEEEeCCCCc---------eEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 000268 604 DGKTIVWDIWEGI---------PIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 658 (1757)
Q Consensus 604 DG~IrIWDl~tg~---------~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~tGe 658 (1757)
||+|+|||+.++. |+.++..|.+.|..+.|. ...|++++.|.+|.|||+-.|-
T Consensus 419 DGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 419 DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred cceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCCC
Confidence 9999999998763 445555688899999885 5679999999999999997763
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=300.58 Aligned_cols=291 Identities=26% Similarity=0.409 Sum_probs=251.9
Q ss_pred EEEec-CCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCC--ceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEE
Q 000268 279 ASCRG-HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL--PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355 (1757)
Q Consensus 279 ~tL~g-H~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~--~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIr 355 (1757)
..+.+ +...|.++.|+++|++|++++.++.|++|++.++. .+..+.+|...|.+++|+|++. ++++++.|++|+
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~---~l~s~s~D~tir 228 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGS---YLLSGSDDKTLR 228 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCc---EEEEecCCceEE
Confidence 34444 47899999999999999999999999999998887 7788889999999999999998 999999999999
Q ss_pred EEecC-CCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCc
Q 000268 356 IWDAR-YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNH 434 (1757)
Q Consensus 356 IWDl~-tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~ 434 (1757)
|||+. .+.++.++ .+|...|++++|+|+|+++++|+.|++|+|||+++ +.
T Consensus 229 iwd~~~~~~~~~~l--------------------~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~---------~~ 279 (456)
T KOG0266|consen 229 IWDLKDDGRNLKTL--------------------KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT---------GE 279 (456)
T ss_pred EeeccCCCeEEEEe--------------------cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC---------Ce
Confidence 99994 33444444 36899999999999999999999999999999976 55
Q ss_pred ceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccc
Q 000268 435 EIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 514 (1757)
Q Consensus 435 ~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~ 514 (1757)
.+..+.+|.+.|++++|++++ ..|++++.||.|+|||+.++...
T Consensus 280 ~~~~l~~hs~~is~~~f~~d~--------------------------~~l~s~s~d~~i~vwd~~~~~~~---------- 323 (456)
T KOG0266|consen 280 CVRKLKGHSDGISGLAFSPDG--------------------------NLLVSASYDGTIRVWDLETGSKL---------- 323 (456)
T ss_pred EEEeeeccCCceEEEEECCCC--------------------------CEEEEcCCCccEEEEECCCCcee----------
Confidence 788999999999999999987 78999999999999999974411
Q ss_pred cccCCCCCCCCCCCCCCCceeecCCCC--CeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeE---EEE
Q 000268 515 HLKVPPPPMPPQPPRGGPRQRILPTPR--GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTY---VLD 589 (1757)
Q Consensus 515 ~l~~~~~~~~~~~~~~~~~~~l~~h~~--~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~Vt---sLa 589 (1757)
....+..+.. .+++++|+|++.+|++++.|+.+++||+..+..+..+.+|...+. +..
T Consensus 324 -----------------~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 324 -----------------CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred -----------------eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc
Confidence 1112222322 589999999999999999999999999999999999999988643 334
Q ss_pred EecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeec-CcceEEEEEcCCCCEEEEEe--CCCeEEEEECC
Q 000268 590 VHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS-RFRLVDGKFSPDGASIILSD--DVGQLYILNTG 655 (1757)
Q Consensus 590 fSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~-~~~VtslafSPDGk~LAsgs--~DG~I~IWdl~ 655 (1757)
.++ ++.++++|+.|+.|.+|++.++..+..+.+| ...+..+.|+|...++++++ .|+.|++|...
T Consensus 387 ~~~-~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 387 LST-GGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ccC-CCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 455 7889999999999999999999999999988 78899999999999999987 78999999753
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-27 Score=285.69 Aligned_cols=329 Identities=19% Similarity=0.347 Sum_probs=274.6
Q ss_pred EEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCC
Q 000268 238 RVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG 317 (1757)
Q Consensus 238 tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg 317 (1757)
.|..-+..|..++|+|...+++++-..|.|.+||..-+.++..|..|.++|+.++|+|.+.++++|+.|-.|+||+..+.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence 34555678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEE
Q 000268 318 LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFC 397 (1757)
Q Consensus 318 ~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~s 397 (1757)
+++.++.||-.-|..+.|++.-. .+++++.|.+|+||+..+++++..+ .+|.+.|.|
T Consensus 84 rclftL~GHlDYVRt~~FHheyP---WIlSASDDQTIrIWNwqsr~~iavl--------------------tGHnHYVMc 140 (1202)
T KOG0292|consen 84 RCLFTLLGHLDYVRTVFFHHEYP---WILSASDDQTIRIWNWQSRKCIAVL--------------------TGHNHYVMC 140 (1202)
T ss_pred eehhhhccccceeEEeeccCCCc---eEEEccCCCeEEEEeccCCceEEEE--------------------ecCceEEEe
Confidence 99999999999999999999876 9999999999999999999887776 369999999
Q ss_pred EEECCCCCEEEEeeCCceEEEecCCCCCC---CCC----------------CC-CCcceeeecCCCCCceEEEEccCccc
Q 000268 398 CAFNANGTVFVTGSSDTLARVWNACKPNT---DDS----------------DQ-PNHEIDVLSGHENDVNYVQFSGCAVA 457 (1757)
Q Consensus 398 lafSpdG~~LasGs~DG~IrVWDl~t~~~---~~s----------------~~-~~~~i~~l~gH~~~V~sLafSpdg~~ 457 (1757)
..|+|....+++++-|.+|||||+..-.. ... .+ ..-....+.||...|+.++|.|.-
T Consensus 141 AqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-- 218 (1202)
T KOG0292|consen 141 AQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-- 218 (1202)
T ss_pred eccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc--
Confidence 99999999999999999999999853211 000 00 011234678999999999999864
Q ss_pred cccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeec
Q 000268 458 SRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL 537 (1757)
Q Consensus 458 s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~ 537 (1757)
..|++|+.|..|++|.+...+ . -......
T Consensus 219 ------------------------pliVSG~DDRqVKlWrmnetK------a---------------------WEvDtcr 247 (1202)
T KOG0292|consen 219 ------------------------PLIVSGADDRQVKLWRMNETK------A---------------------WEVDTCR 247 (1202)
T ss_pred ------------------------ceEEecCCcceeeEEEecccc------c---------------------eeehhhh
Confidence 689999999999999887422 1 2233456
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce
Q 000268 538 PTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIP 617 (1757)
Q Consensus 538 ~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~ 617 (1757)
+|...|.++.|.|...+|++.+.|++|+|||+...+.+++|+...+.-+.++.+| ...++ .+++|+-+.||.+..-.+
T Consensus 248 gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP-~lNLf-AAgHDsGm~VFkleRErp 325 (1202)
T KOG0292|consen 248 GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHP-ELNLF-AAGHDSGMIVFKLERERP 325 (1202)
T ss_pred cccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecC-Cccee-eeecCCceEEEEEcccCc
Confidence 8999999999999999999999999999999999999999988888999999999 55555 567899899998854444
Q ss_pred EEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc
Q 000268 618 IRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGES 659 (1757)
Q Consensus 618 l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~tGe~ 659 (1757)
...+. +..|+..- +..|+-+|+.+.+.
T Consensus 326 a~~v~--------------~n~LfYvk-d~~i~~~d~~t~~d 352 (1202)
T KOG0292|consen 326 AYAVN--------------GNGLFYVK-DRFIRSYDLRTQKD 352 (1202)
T ss_pred eEEEc--------------CCEEEEEc-cceEEeeecccccc
Confidence 33221 33344333 56777777776433
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-28 Score=275.99 Aligned_cols=291 Identities=19% Similarity=0.293 Sum_probs=245.3
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCC---CceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcE
Q 000268 278 LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG---LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354 (1757)
Q Consensus 278 l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg---~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtI 354 (1757)
.+.+..|...|+-+.||++|++||+++.|.+..+|.+... +...++.+|..+|..+.||||.+ +|++++.|..+
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr---yLlaCg~~e~~ 293 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR---YLLACGFDEVL 293 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC---eEEecCchHhe
Confidence 4556789999999999999999999999999999987654 44778899999999999999987 99999999999
Q ss_pred EEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCc
Q 000268 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNH 434 (1757)
Q Consensus 355 rIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~ 434 (1757)
.+||+.+|.+...+. .++...+.+++|.|||..|++|+.|+.|..||+.. .
T Consensus 294 ~lwDv~tgd~~~~y~-------------------~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg----------n 344 (519)
T KOG0293|consen 294 SLWDVDTGDLRHLYP-------------------SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG----------N 344 (519)
T ss_pred eeccCCcchhhhhcc-------------------cCcCCCcceeEEccCCceeEecCCCCcEEEecCCc----------c
Confidence 999999998765542 12356789999999999999999999999999953 2
Q ss_pred ceeeecCC-CCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCccccccccc
Q 000268 435 EIDVLSGH-ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQA 513 (1757)
Q Consensus 435 ~i~~l~gH-~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~ 513 (1757)
......+- ...|.+++.+++| ..+++.+.|..|++++..+...
T Consensus 345 ~~~~W~gvr~~~v~dlait~Dg--------------------------k~vl~v~~d~~i~l~~~e~~~d---------- 388 (519)
T KOG0293|consen 345 ILGNWEGVRDPKVHDLAITYDG--------------------------KYVLLVTVDKKIRLYNREARVD---------- 388 (519)
T ss_pred hhhcccccccceeEEEEEcCCC--------------------------cEEEEEecccceeeechhhhhh----------
Confidence 22333332 2568999999987 6888888999999998875221
Q ss_pred ccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeE--EEEEe
Q 000268 514 YHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTY--VLDVH 591 (1757)
Q Consensus 514 ~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~Vt--sLafS 591 (1757)
..+.....+|+++++|.||+++++.-.+..|.+||+...++++.+.||...-+ .-+|-
T Consensus 389 --------------------r~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFg 448 (519)
T KOG0293|consen 389 --------------------RGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFG 448 (519)
T ss_pred --------------------hccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccC
Confidence 11344567899999999999999999999999999999999999999976533 33555
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCcceEEEEEcCCC-CEEEEEeCCCeEEEEECCC
Q 000268 592 PFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDG-ASIILSDDVGQLYILNTGQ 656 (1757)
Q Consensus 592 Pdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSPDG-k~LAsgs~DG~I~IWdl~t 656 (1757)
-.+..++++|+.|+.|+||+..+|+++..+.+|...|.+++|+|.. .++|++++||+|+||....
T Consensus 449 g~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 449 GGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 4455899999999999999999999999999999999999999955 5788999999999998753
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=286.57 Aligned_cols=291 Identities=19% Similarity=0.305 Sum_probs=251.3
Q ss_pred CeEEEEEecCCCCeEEEEEcC-CCCEEEEEeCCceEEEEECCC-CCceEEecCCCCceEEEEecCCCCceEEEEEEeCCC
Q 000268 275 AYCLASCRGHEGDITDLAVSS-NNALVASASNDCIIRVWRLPD-GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDG 352 (1757)
Q Consensus 275 g~~l~tL~gH~~~VtsLafSP-Dg~lLASgS~DGtIrVWDl~t-g~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DG 352 (1757)
.+.+.++.||...|+++.|.| .+.+|++++.|+.|+||++-. +.+++++.+|..+|.+++|+.++. .|++++.|+
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~---~fLS~sfD~ 280 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGT---SFLSASFDR 280 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCC---eeeeeecce
Confidence 356778899999999999999 889999999999999999976 899999999999999999999997 899999999
Q ss_pred cEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCC-CEEEEeeCCceEEEecCCCCCCCCCCC
Q 000268 353 TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQ 431 (1757)
Q Consensus 353 tIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG-~~LasGs~DG~IrVWDl~t~~~~~s~~ 431 (1757)
.|++||+++|+++..+.. ...++|+.|.|++ +.|++|+.|+.|+.||+++
T Consensus 281 ~lKlwDtETG~~~~~f~~---------------------~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs-------- 331 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSRFHL---------------------DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS-------- 331 (503)
T ss_pred eeeeeccccceEEEEEec---------------------CCCceeeecCCCCCcEEEEecCCCcEEEEeccc--------
Confidence 999999999999888753 4458899999998 8999999999999999987
Q ss_pred CCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCccccccc
Q 000268 432 PNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 511 (1757)
Q Consensus 432 ~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~ 511 (1757)
++.++....|-+.|..+.|.+.+ ..+++.+.|++++||+....-.+.
T Consensus 332 -~kvvqeYd~hLg~i~~i~F~~~g--------------------------~rFissSDdks~riWe~~~~v~ik------ 378 (503)
T KOG0282|consen 332 -GKVVQEYDRHLGAILDITFVDEG--------------------------RRFISSSDDKSVRIWENRIPVPIK------ 378 (503)
T ss_pred -hHHHHHHHhhhhheeeeEEccCC--------------------------ceEeeeccCccEEEEEcCCCccch------
Confidence 45678888999999999999986 799999999999999987522110
Q ss_pred ccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCC---ceEEEEeCCCC--CeE
Q 000268 512 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG---SLVHSLTGHTE--STY 586 (1757)
Q Consensus 512 ~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tg---kll~~L~gH~~--~Vt 586 (1757)
.....+.....+|..+|++.++++-+.|+.|.||.+... .....+.||.. --.
T Consensus 379 ----------------------~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~ 436 (503)
T KOG0282|consen 379 ----------------------NIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSC 436 (503)
T ss_pred ----------------------hhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCcee
Confidence 011122234668899999999999999999999997543 23346778854 456
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCcceEEEEEcCCC-CEEEEEeCCCeEEEEE
Q 000268 587 VLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDG-ASIILSDDVGQLYILN 653 (1757)
Q Consensus 587 sLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSPDG-k~LAsgs~DG~I~IWd 653 (1757)
.+.||| |+++|++|+.||.+.+||..+-+++..+..|...++.+.|.|-. ..||+++.+|.|++|+
T Consensus 437 ~v~fSp-DG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 437 QVDFSP-DGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eEEEcC-CCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 689999 78899999999999999999999999999999999999999965 5788899999999996
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=254.71 Aligned_cols=294 Identities=19% Similarity=0.278 Sum_probs=242.0
Q ss_pred eEEEEEecCCCCeEEEEEcCC-CCEEEEEeCCceEEEEECCCC---CceEEe-cCCCCceEEEEecCCCCceEEEEEEeC
Q 000268 276 YCLASCRGHEGDITDLAVSSN-NALVASASNDCIIRVWRLPDG---LPISVL-RGHTAAVTAIAFSPRPGSVYQLLSSSD 350 (1757)
Q Consensus 276 ~~l~tL~gH~~~VtsLafSPD-g~lLASgS~DGtIrVWDl~tg---~~l~~l-~gH~~~VtsLafSPdg~~~~~LaSgs~ 350 (1757)
..++.+.+|.+.|..++|+|- |..||+|+.|..|+||+...+ .+...+ .+|...|.+++|+|.++ +|++++.
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~---~La~aSF 81 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR---YLASASF 81 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc---EEEEeec
Confidence 346778899999999999998 889999999999999998753 333334 47999999999999998 9999999
Q ss_pred CCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCC
Q 000268 351 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD 430 (1757)
Q Consensus 351 DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~ 430 (1757)
|+++.||.-..+.+... ..+.+|...|.|++|+++|.+||+++.|..|-||.+.. .
T Consensus 82 D~t~~Iw~k~~~efecv------------------~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~de------d 137 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFECV------------------ATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDE------D 137 (312)
T ss_pred cceEEEeecCCCceeEE------------------eeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecC------C
Confidence 99999998766553322 23457899999999999999999999999999999853 2
Q ss_pred CCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccc
Q 000268 431 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510 (1757)
Q Consensus 431 ~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w 510 (1757)
.....+..+..|...|..+.|.|.. ++|++++.|.+|++|.-..
T Consensus 138 dEfec~aVL~~HtqDVK~V~WHPt~--------------------------dlL~S~SYDnTIk~~~~~~---------- 181 (312)
T KOG0645|consen 138 DEFECIAVLQEHTQDVKHVIWHPTE--------------------------DLLFSCSYDNTIKVYRDED---------- 181 (312)
T ss_pred CcEEEEeeeccccccccEEEEcCCc--------------------------ceeEEeccCCeEEEEeecC----------
Confidence 3466788999999999999999974 7999999999999997552
Q ss_pred cccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEE
Q 000268 511 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDV 590 (1757)
Q Consensus 511 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLaf 590 (1757)
.......+.+.+|...|.+++|++.|..|++++.|++|+||-..+.- -.-|...++.++|
T Consensus 182 ----------------dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W 241 (312)
T KOG0645|consen 182 ----------------DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYDVPW 241 (312)
T ss_pred ----------------CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc----chhcccceEeeee
Confidence 11234456777888899999999999999999999999999865221 1237788999999
Q ss_pred ecCCCcEEEEEeCCCcEEEEeCCCC------ceEE-EEeecCcceEEEEEcCC-CCEEEEEeCCCeEEEEECC
Q 000268 591 HPFNPRIAMSAGYDGKTIVWDIWEG------IPIR-IYEISRFRLVDGKFSPD-GASIILSDDVGQLYILNTG 655 (1757)
Q Consensus 591 SPdd~~lLaSgs~DG~IrIWDl~tg------~~l~-~l~~~~~~VtslafSPD-Gk~LAsgs~DG~I~IWdl~ 655 (1757)
. .-+|+|++.|+.|+|+.-..+ +++. .-..|...|.+++|.|. ..+|+++++||.|.+|.+.
T Consensus 242 ~---~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 242 D---NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred c---ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 6 457899999999999987653 1111 22356678999999995 7889999999999999874
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-28 Score=267.55 Aligned_cols=288 Identities=23% Similarity=0.385 Sum_probs=246.4
Q ss_pred cCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEe--------cCCCCeEEEEEcCCCCEEEEEeCCceEEEE
Q 000268 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR--------GHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1757)
Q Consensus 241 GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~--------gH~~~VtsLafSPDg~lLASgS~DGtIrVW 312 (1757)
|..+-+-|..|||||+||++|+.||.|.||+..+|++.+.++ -+...|.|+.|+.|..+||+|+.||.|+||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 567789999999999999999999999999999998766543 478899999999999999999999999999
Q ss_pred ECCCCCceEEec-CCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCC
Q 000268 313 RLPDGLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQ 391 (1757)
Q Consensus 313 Dl~tg~~l~~l~-gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~ 391 (1757)
.+.+|.+++.|. .|+..|+|+.|+.|+. .+++++.|.++++--+..|+++..+ .+|
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~S---qiLS~sfD~tvRiHGlKSGK~LKEf--------------------rGH 347 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNS---QILSASFDQTVRIHGLKSGKCLKEF--------------------RGH 347 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcc---hhhcccccceEEEeccccchhHHHh--------------------cCc
Confidence 999999999986 8999999999999987 8999999999999999999988776 368
Q ss_pred CcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCC
Q 000268 392 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDST 471 (1757)
Q Consensus 392 ~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~ 471 (1757)
...|+...|.++|..+++++.||+|+||+..+..+..+..+ .+..-.|+++...|..
T Consensus 348 sSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~-------~~~d~~vnsv~~~PKn---------------- 404 (508)
T KOG0275|consen 348 SSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP-------LGTDYPVNSVILLPKN---------------- 404 (508)
T ss_pred cccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccC-------CCCcccceeEEEcCCC----------------
Confidence 88999999999999999999999999999987665433332 2345567777777654
Q ss_pred CcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCC
Q 000268 472 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD 551 (1757)
Q Consensus 472 ~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPD 551 (1757)
+..+++|....+|.|.++...- .+.+.. + ....+...+.+.||.
T Consensus 405 ---------peh~iVCNrsntv~imn~qGQv--------VrsfsS-------------G------kREgGdFi~~~lSpk 448 (508)
T KOG0275|consen 405 ---------PEHFIVCNRSNTVYIMNMQGQV--------VRSFSS-------------G------KREGGDFINAILSPK 448 (508)
T ss_pred ---------CceEEEEcCCCeEEEEeccceE--------Eeeecc-------------C------CccCCceEEEEecCC
Confidence 4689999999999999877311 111100 0 112344667789999
Q ss_pred CCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000268 552 NRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1757)
Q Consensus 552 G~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWD 611 (1757)
|.++.+.+.|+.++.|...+|++.+++.-|...|..++-+| ...++|+-+.||.+++|.
T Consensus 449 GewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHP-HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 449 GEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHP-HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCc-ccchhhhhcccchhhhcC
Confidence 99999999999999999999999999999999999999999 678899999999999995
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=257.00 Aligned_cols=286 Identities=20% Similarity=0.281 Sum_probs=242.7
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECC-CCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEE
Q 000268 279 ASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP-DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIW 357 (1757)
Q Consensus 279 ~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~-tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIW 357 (1757)
..+.+|.+.|..+.|+|+|.+||+|+.|..|.+|++- ..+...++++|.+.|..+.|.+|+. .|++++.|.+|+.|
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s---~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGS---HILSCGTDKTVRGW 117 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCC---EEEEecCCceEEEE
Confidence 3467999999999999999999999999999999953 4566788899999999999999998 99999999999999
Q ss_pred ecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCC-CEEEEeeCCceEEEecCCCCCCCCCCCCCcce
Q 000268 358 DARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 436 (1757)
Q Consensus 358 Dl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG-~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i 436 (1757)
|+++|+...+.. .|..-|.++.-+.-| .++.+|+.|++++|||+++....
T Consensus 118 D~~tG~~~rk~k--------------------~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~--------- 168 (338)
T KOG0265|consen 118 DAETGKRIRKHK--------------------GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI--------- 168 (338)
T ss_pred ecccceeeehhc--------------------cccceeeecCccccCCeEEEecCCCceEEEEeecccchh---------
Confidence 999999877653 477778888755555 46677888999999999864321
Q ss_pred eeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccc
Q 000268 437 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHL 516 (1757)
Q Consensus 437 ~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l 516 (1757)
..+ ...-.++++.|...+ +.+++|+-|+.|++||++.
T Consensus 169 ~t~-~~kyqltAv~f~d~s--------------------------~qv~sggIdn~ikvWd~r~---------------- 205 (338)
T KOG0265|consen 169 KTF-ENKYQLTAVGFKDTS--------------------------DQVISGGIDNDIKVWDLRK---------------- 205 (338)
T ss_pred hcc-ccceeEEEEEecccc--------------------------cceeeccccCceeeecccc----------------
Confidence 111 224467889998665 7899999999999999984
Q ss_pred cCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCC----CceEEEEeCCCCC----eEEE
Q 000268 517 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD----GSLVHSLTGHTES----TYVL 588 (1757)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~t----gkll~~L~gH~~~----VtsL 588 (1757)
......+.+|...|+.+..+++|.++.+-++|.++++||++- ..++..+.+|... ....
T Consensus 206 -------------~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~c 272 (338)
T KOG0265|consen 206 -------------NDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKC 272 (338)
T ss_pred -------------CcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhccee
Confidence 234566788999999999999999999999999999999864 3458888887542 4567
Q ss_pred EEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000268 589 DVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 653 (1757)
Q Consensus 589 afSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWd 653 (1757)
+|+| +.+.+.+|+.|..+++||......+..+.+|.+.|.++.|+|...+|.+++.|.+|++=.
T Consensus 273 swsp-~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 273 SWSP-NGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred eccC-CCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 8999 778888999999999999988899999999999999999999999999999999998743
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-26 Score=259.56 Aligned_cols=295 Identities=21% Similarity=0.360 Sum_probs=247.9
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCC
Q 000268 283 GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 362 (1757)
Q Consensus 283 gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg 362 (1757)
.|...|.++... +++|++|++||.++|||. .|+.+..+.||+++|.+++|.-.+.....|++++.|.++++|-++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 388999998887 779999999999999996 68999999999999998888755443347999999999999998877
Q ss_pred CccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCC----------------C
Q 000268 363 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPN----------------T 426 (1757)
Q Consensus 363 ~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~----------------~ 426 (1757)
....... ....+|...|-++...++|..+++|+-|.+|.||+..+.. .
T Consensus 180 ~~~~~~~----------------~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~ 243 (423)
T KOG0313|consen 180 ENKVKAL----------------KVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKR 243 (423)
T ss_pred hhhhhHH----------------hHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhh
Confidence 6433221 1123789999999999999999999999999999932211 0
Q ss_pred CCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcc
Q 000268 427 DDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPK 506 (1757)
Q Consensus 427 ~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~ 506 (1757)
........++..+.||..+|.++.|++. ..+++++.|.+|+.||+.++..
T Consensus 244 ~~~~~~r~P~vtl~GHt~~Vs~V~w~d~---------------------------~v~yS~SwDHTIk~WDletg~~--- 293 (423)
T KOG0313|consen 244 EKEGGTRTPLVTLEGHTEPVSSVVWSDA---------------------------TVIYSVSWDHTIKVWDLETGGL--- 293 (423)
T ss_pred hhcccccCceEEecccccceeeEEEcCC---------------------------CceEeecccceEEEEEeecccc---
Confidence 1122335567789999999999999974 4899999999999999997442
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCc---eEEEEeCCCC
Q 000268 507 AARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGS---LVHSLTGHTE 583 (1757)
Q Consensus 507 ~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgk---ll~~L~gH~~ 583 (1757)
.........++++..+|..++|++|+.|..|++||.+++. ..++|.||.+
T Consensus 294 ---------------------------~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~n 346 (423)
T KOG0313|consen 294 ---------------------------KSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKN 346 (423)
T ss_pred ---------------------------eeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchh
Confidence 1122345678999999999999999999999999998753 4568999999
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc-eEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 000268 584 STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI-PIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 654 (1757)
Q Consensus 584 ~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~-~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl 654 (1757)
.|.++.|+|.+..+|++|+.|+++++||+++.+ ++..+.+|...|.++.|.. |.+|++|+.|.+|+|+..
T Consensus 347 wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 347 WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred hhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEEEecc
Confidence 999999999999999999999999999999887 9999999999999999985 678999999999999974
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=260.22 Aligned_cols=303 Identities=19% Similarity=0.313 Sum_probs=254.5
Q ss_pred CCCCCCCCCC-----CCccccccccccccccCCccccccCCcchhhhccccccCccccccceeEEEEccCCCCEEEEEEC
Q 000268 178 IDHPPAHMRW-----PHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFD 252 (1757)
Q Consensus 178 ~~~p~~~~r~-----p~~~~~~V~~l~~r~~Gg~~~~~~~~~~l~s~~~~~a~~~~~~~~~k~l~tL~GH~~~V~~VaFS 252 (1757)
++.|.|+..| -.+|.++|+++.+.+.-. .+.+.+....+-+|++.++++..+|.||...|..|+||
T Consensus 132 ~~rPeWHapwKl~rVi~gHlgWVr~vavdP~n~---------wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS 202 (460)
T KOG0285|consen 132 MPRPEWHAPWKLYRVISGHLGWVRSVAVDPGNE---------WFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVS 202 (460)
T ss_pred CCCccccCcceehhhhhhccceEEEEeeCCCce---------eEEecCCCceeEEEEcccCeEEEeecchhheeeeeeec
Confidence 3555566555 467889999988776432 33344455667789999999999999999999999999
Q ss_pred CCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEE
Q 000268 253 RSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTA 332 (1757)
Q Consensus 253 PDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~Vts 332 (1757)
+--.||++++.|+.|+.||++..+.++.+.||-..|.|++..|.-..|++|+.|.+++|||+++...+.++.||..+|..
T Consensus 203 ~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~ 282 (460)
T KOG0285|consen 203 KRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVAS 282 (460)
T ss_pred ccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeC
Q 000268 333 IAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS 412 (1757)
Q Consensus 333 LafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~ 412 (1757)
+.+.|... .+++|+.|++|++||+..|+....+. .|...|.+++.+|....||+++.
T Consensus 283 V~~~~~dp---qvit~S~D~tvrlWDl~agkt~~tlt--------------------~hkksvral~lhP~e~~fASas~ 339 (460)
T KOG0285|consen 283 VMCQPTDP---QVITGSHDSTVRLWDLRAGKTMITLT--------------------HHKKSVRALCLHPKENLFASASP 339 (460)
T ss_pred EEeecCCC---ceEEecCCceEEEeeeccCceeEeee--------------------cccceeeEEecCCchhhhhccCC
Confidence 99999776 89999999999999999988665553 47778999999999999999987
Q ss_pred CceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCe
Q 000268 413 DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGS 492 (1757)
Q Consensus 413 DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGt 492 (1757)
|. |+-|++.. +..+..+.+|...|+++....++ .+++|+..|.
T Consensus 340 dn-ik~w~~p~---------g~f~~nlsgh~~iintl~~nsD~---------------------------v~~~G~dng~ 382 (460)
T KOG0285|consen 340 DN-IKQWKLPE---------GEFLQNLSGHNAIINTLSVNSDG---------------------------VLVSGGDNGS 382 (460)
T ss_pred cc-ceeccCCc---------cchhhccccccceeeeeeeccCc---------------------------eEEEcCCceE
Confidence 75 89999854 34566689999999999988764 9999999999
Q ss_pred EEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECC
Q 000268 493 AIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAA 570 (1757)
Q Consensus 493 I~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~ 570 (1757)
+.+||.+++..........+ .-......+|.+.+|...|..|++|..|.+|++|.-.
T Consensus 383 ~~fwdwksg~nyQ~~~t~vq---------------------pGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 383 IMFWDWKSGHNYQRGQTIVQ---------------------PGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred EEEEecCcCccccccccccc---------------------CCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 99999997542211110000 0012234679999999999999999999999999753
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=251.46 Aligned_cols=292 Identities=23% Similarity=0.314 Sum_probs=254.2
Q ss_pred EEEEecCCCCeEEEEEcC---CCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcE
Q 000268 278 LASCRGHEGDITDLAVSS---NNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354 (1757)
Q Consensus 278 l~tL~gH~~~VtsLafSP---Dg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtI 354 (1757)
-.++.||+.+|..++|+| +|-+|++++.||.-.+-+-++|.-+.+|.||.+.|++.++..+.. ..++++.|-+-
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~---~aasaaadfta 83 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNAT---RAASAAADFTA 83 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhh---hhhhhcccchh
Confidence 346789999999999985 888999999999999999999999999999999999999988765 77899999999
Q ss_pred EEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCc
Q 000268 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNH 434 (1757)
Q Consensus 355 rIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~ 434 (1757)
++||.-+|..+..+ .|..-|.+++|+.|.++|++|+.+..+||||+..+ ..
T Consensus 84 kvw~a~tgdelhsf---------------------~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p--------~A 134 (334)
T KOG0278|consen 84 KVWDAVTGDELHSF---------------------EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRP--------KA 134 (334)
T ss_pred hhhhhhhhhhhhhh---------------------hhhheeeeEEecccchhhhccchHHHhhhhhccCC--------CC
Confidence 99999998866655 37778999999999999999999999999999653 44
Q ss_pred ceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccc
Q 000268 435 EIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 514 (1757)
Q Consensus 435 ~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~ 514 (1757)
+...+.+|.+.|..+.|.... ..|++.+.|++|++||.++++
T Consensus 135 pp~E~~ghtg~Ir~v~wc~eD--------------------------~~iLSSadd~tVRLWD~rTgt------------ 176 (334)
T KOG0278|consen 135 PPKEISGHTGGIRTVLWCHED--------------------------KCILSSADDKTVRLWDHRTGT------------ 176 (334)
T ss_pred CchhhcCCCCcceeEEEeccC--------------------------ceEEeeccCCceEEEEeccCc------------
Confidence 567789999999999998653 678888999999999999744
Q ss_pred cccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCC
Q 000268 515 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFN 594 (1757)
Q Consensus 515 ~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd 594 (1757)
....+.....|+++-++++|++|.++. .+.|.+||..+..+++.++-. ..|.+..++| +
T Consensus 177 ------------------~v~sL~~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P-~ 235 (334)
T KOG0278|consen 177 ------------------EVQSLEFNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYKMP-CNVESASLHP-K 235 (334)
T ss_pred ------------------EEEEEecCCCCcceeeccCCCEEEEec-CceeEEeccccccceeeccCc-cccccccccC-C
Confidence 122234566799999999999887765 468999999999999888744 4588999999 5
Q ss_pred CcEEEEEeCCCcEEEEeCCCCceEEEE-eecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 000268 595 PRIAMSAGYDGKTIVWDIWEGIPIRIY-EISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQ 660 (1757)
Q Consensus 595 ~~lLaSgs~DG~IrIWDl~tg~~l~~l-~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~tGe~~ 660 (1757)
..++++|+.|+.++.||..+|..+..+ .+|.++|.++.|+|||...|+|+.||+|+||.+..++..
T Consensus 236 k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 236 KEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred CceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 688889999999999999999999997 789999999999999999999999999999999877543
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-24 Score=259.05 Aligned_cols=433 Identities=17% Similarity=0.149 Sum_probs=308.2
Q ss_pred EccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCe-EEEEEecC-CCCeEEEEEcCCCCEEEEEeCCceEEEEECCC
Q 000268 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY-CLASCRGH-EGDITDLAVSSNNALVASASNDCIIRVWRLPD 316 (1757)
Q Consensus 239 L~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~-~l~tL~gH-~~~VtsLafSPDg~lLASgS~DGtIrVWDl~t 316 (1757)
+.--...|.|+||+.+.+.||.+-.+|.|.||++..+- +...+.++ ...|.+++|+ ++..|++.+.+|.|.-||+.+
T Consensus 21 ~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 21 VDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred EeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEeccc
Confidence 34456789999999999999999999999999998753 33455554 4689999999 455788889999999999999
Q ss_pred CCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceE
Q 000268 317 GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF 396 (1757)
Q Consensus 317 g~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~ 396 (1757)
++++..+....+.|++++.+|.+. .++.|+.||.+.++++..+.......+ ....+.|.
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~~---~l~IgcddGvl~~~s~~p~~I~~~r~l------------------~rq~sRvL 158 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPENT---ILAIGCDDGVLYDFSIGPDKITYKRSL------------------MRQKSRVL 158 (691)
T ss_pred CceeEEecCCCcceeEEEeCCccc---eEEeecCCceEEEEecCCceEEEEeec------------------ccccceEE
Confidence 999999999999999999999987 899999999888888877765544332 22457899
Q ss_pred EEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeec-CCCCCceEEEEccCccccccccccCCCCCCCCccc
Q 000268 397 CCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLS-GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475 (1757)
Q Consensus 397 slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~-gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~ 475 (1757)
+++|+|++..||+|+.||.|++||+.++..... . ...+..+. +...-|+++.|..+
T Consensus 159 slsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~-~-~~~~d~l~k~~~~iVWSv~~Lrd--------------------- 215 (691)
T KOG2048|consen 159 SLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHI-I-TMQLDRLSKREPTIVWSVLFLRD--------------------- 215 (691)
T ss_pred EEEecCCccEEEecccCceEEEEEcCCCceEEE-e-eecccccccCCceEEEEEEEeec---------------------
Confidence 999999999999999999999999977543210 0 00011111 13344667766654
Q ss_pred ccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEE
Q 000268 476 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFV 555 (1757)
Q Consensus 476 ~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~L 555 (1757)
+.|++|..-|+|.+||... +...+....|...|.+++.++++.++
T Consensus 216 ------~tI~sgDS~G~V~FWd~~~-----------------------------gTLiqS~~~h~adVl~Lav~~~~d~v 260 (691)
T KOG2048|consen 216 ------STIASGDSAGTVTFWDSIF-----------------------------GTLIQSHSCHDADVLALAVADNEDRV 260 (691)
T ss_pred ------CcEEEecCCceEEEEcccC-----------------------------cchhhhhhhhhcceeEEEEcCCCCeE
Confidence 5899999999999999885 33445566788999999999999999
Q ss_pred EEEecCCeEEEEECCCCce----EEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC------------------
Q 000268 556 LAAIMDCRICVWNAADGSL----VHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW------------------ 613 (1757)
Q Consensus 556 aSGs~DG~I~IWDl~tgkl----l~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~------------------ 613 (1757)
++++.|+.|..|...+++. ......|...|.+++..+ ..+++||.|..+.+-...
T Consensus 261 fsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~---~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~ 337 (691)
T KOG2048|consen 261 FSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIE---NALISGGRDFTLAICSSREFKNMDHRQKNLFPASDR 337 (691)
T ss_pred EEccCCCceEEEEecCCccceeeeccccCCcccceeeeeec---ceEEecceeeEEEEccccccCchhhhccccccccce
Confidence 9999999999998876543 223457888899998876 277788877765554322
Q ss_pred ------------------------CC---------ceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 000268 614 ------------------------EG---------IPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQ 660 (1757)
Q Consensus 614 ------------------------tg---------~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~tGe~~ 660 (1757)
+. .+++........|.+.+.||||++||.+.- ..++||.+...-.+
T Consensus 338 v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~v 416 (691)
T KOG2048|consen 338 VSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTV-SRTKIYRLQPDPNV 416 (691)
T ss_pred eecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeec-cceEEEEeccCcce
Confidence 11 111222234457889999999999998764 45667776542222
Q ss_pred cccc-----------cceeecCCCccEEEccCC-c---eeecccccccCcCCCCCcccCCCCCCCCCcchhhhhcccccc
Q 000268 661 KDAK-----------YDQFFLGDYRPLVQDTYG-N---VLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGA 725 (1757)
Q Consensus 661 ~~~~-----------~~~~fs~D~r~Li~d~~g-~---vlD~~tql~phl~~l~~~L~D~~~~p~p~~~Q~l~~~r~~~v 725 (1757)
+... ....|.-|..-++..... . .++.++...-++..+++ | ..-..+
T Consensus 417 k~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~--------------~----~~~~~I 478 (691)
T KOG2048|consen 417 KVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQS--------------Q----AKCPSI 478 (691)
T ss_pred eEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhcccc--------------c----cCCCcc
Confidence 1111 122445455444433311 1 12222221122222111 1 122346
Q ss_pred cceEECCCCCeEEEeeCCCCCCceEeeccCCcccc--cCCCccccceeeeCCC
Q 000268 726 LGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVM--IDPLPEFIDVMDWEPE 776 (1757)
Q Consensus 726 ~~lAfSPDG~~LAvg~d~s~~~~v~l~~l~~~~~l--~~plp~~i~~~~~sPD 776 (1757)
..|+.||||.|||+. +..+.+-+|.+.+.+.- ..-++..++.++|+|.
T Consensus 479 ~~l~~SsdG~yiaa~---~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~ 528 (691)
T KOG2048|consen 479 SRLVVSSDGNYIAAI---STRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPF 528 (691)
T ss_pred eeEEEcCCCCEEEEE---eccceEEEEEcccceeecchhccCcceeeeecccc
Confidence 678899999999999 78899999999877533 2245688999999977
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=283.41 Aligned_cols=288 Identities=25% Similarity=0.468 Sum_probs=250.7
Q ss_pred EEEcc-CCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEE-EecCCCCeEEEEEcCCCCEEEEEeCCceEEEEEC
Q 000268 237 KRVRG-HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLAS-CRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 314 (1757)
Q Consensus 237 ~tL~G-H~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~t-L~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl 314 (1757)
+.+.+ |...|.|..|. +.++++++.+++|++|+..++..+.. +.||.+.|++++|..-+.+|++|+.|.+++|||+
T Consensus 201 ~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~ 278 (537)
T KOG0274|consen 201 KVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDC 278 (537)
T ss_pred eeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEec
Confidence 34444 67788999998 56899999999999999999999998 9999999999999987889999999999999999
Q ss_pred CCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcc
Q 000268 315 PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1757)
Q Consensus 315 ~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~ 394 (1757)
.+|.++.++.+|...|.++...+. ++++|+.|.+|++|++.++.++..+ .+|...
T Consensus 279 ~sg~C~~~l~gh~stv~~~~~~~~-----~~~sgs~D~tVkVW~v~n~~~l~l~--------------------~~h~~~ 333 (537)
T KOG0274|consen 279 STGECTHSLQGHTSSVRCLTIDPF-----LLVSGSRDNTVKVWDVTNGACLNLL--------------------RGHTGP 333 (537)
T ss_pred CCCcEEEEecCCCceEEEEEccCc-----eEeeccCCceEEEEeccCcceEEEe--------------------cccccc
Confidence 999999999999999999998875 7889999999999999988877665 237889
Q ss_pred eEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcc
Q 000268 395 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 474 (1757)
Q Consensus 395 V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~ 474 (1757)
|.++.++ +.++++|+.|++|+||++.+ .+.+..+.+|...|.++.+.+.
T Consensus 334 V~~v~~~--~~~lvsgs~d~~v~VW~~~~---------~~cl~sl~gH~~~V~sl~~~~~-------------------- 382 (537)
T KOG0274|consen 334 VNCVQLD--EPLLVSGSYDGTVKVWDPRT---------GKCLKSLSGHTGRVYSLIVDSE-------------------- 382 (537)
T ss_pred EEEEEec--CCEEEEEecCceEEEEEhhh---------ceeeeeecCCcceEEEEEecCc--------------------
Confidence 9999997 88999999999999999975 6678999999999999988752
Q ss_pred cccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCE
Q 000268 475 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRF 554 (1757)
Q Consensus 475 ~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~ 554 (1757)
..+++|+.|++|++||+.+.. .++..+.+|..-|..+. ..+++
T Consensus 383 -------~~~~Sgs~D~~IkvWdl~~~~----------------------------~c~~tl~~h~~~v~~l~--~~~~~ 425 (537)
T KOG0274|consen 383 -------NRLLSGSLDTTIKVWDLRTKR----------------------------KCIHTLQGHTSLVSSLL--LRDNF 425 (537)
T ss_pred -------ceEEeeeeccceEeecCCchh----------------------------hhhhhhcCCcccccccc--cccce
Confidence 489999999999999999631 23344455666664443 46889
Q ss_pred EEEEecCCeEEEEECCCCceEEEEeC-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEe
Q 000268 555 VLAAIMDCRICVWNAADGSLVHSLTG-HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE 622 (1757)
Q Consensus 555 LaSGs~DG~I~IWDl~tgkll~~L~g-H~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~ 622 (1757)
|++++.|++|++||..++++++++.+ |.+.|+.+++. ...+++++.||.+++||+.++++++.+.
T Consensus 426 Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~~il~s~~~~~~~l~dl~~~~~~~~l~ 491 (537)
T KOG0274|consen 426 LVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG---KEEILCSSDDGSVKLWDLRSGTLIRTLL 491 (537)
T ss_pred eEeccccccEEEeecccCceeeeeccCCcccEEEeecC---cceEEEEecCCeeEEEecccCchhhhhh
Confidence 99999999999999999999999999 67889888875 3567788999999999999999988774
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=254.02 Aligned_cols=478 Identities=16% Similarity=0.179 Sum_probs=333.9
Q ss_pred eEEEEccCCCCEEEEEECCCCCEEEEEcCCc--------eEEEEecCCCeEEEEEecCCCCeEEEEEcC--CCCEEEEE-
Q 000268 235 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDR--------LVKIWSMETAYCLASCRGHEGDITDLAVSS--NNALVASA- 303 (1757)
Q Consensus 235 ~l~tL~GH~~~V~~VaFSPDG~~LATGS~DG--------tIkIWDl~tg~~l~tL~gH~~~VtsLafSP--Dg~lLASg- 303 (1757)
..+.+.||...|.|++.+|+.-++|+|-.-| .|+|||..+-..+..+-.....|+|++|++ .|.+|+..
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD 175 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVD 175 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEec
Confidence 3466889999999999999999999886555 599999988888888877888999999998 34455544
Q ss_pred -eCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCC
Q 000268 304 -SNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 382 (1757)
Q Consensus 304 -S~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~ 382 (1757)
+.+..+.|||++.+......+.....|....|+|.+. .|+....-|.+.+|+++.+.+..+.-+-
T Consensus 176 ~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~---nliit~Gk~H~~Fw~~~~~~l~k~~~~f----------- 241 (626)
T KOG2106|consen 176 DSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDP---NLIITCGKGHLYFWTLRGGSLVKRQGIF----------- 241 (626)
T ss_pred CCCccccchhhchhhhccCcceeccceEEEEEeccCCC---cEEEEeCCceEEEEEccCCceEEEeecc-----------
Confidence 3456789999999888777777778899999999877 4555555689999999988876654221
Q ss_pred CCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccc
Q 000268 383 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSL 462 (1757)
Q Consensus 383 ~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~ 462 (1757)
.......|.|++|.++|. +++|.++|.|.||+..+ .+.......|.+.|.+++...+|
T Consensus 242 -----ek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~---------~~~~k~~~aH~ggv~~L~~lr~G------- 299 (626)
T KOG2106|consen 242 -----EKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGT---------NRISKQVHAHDGGVFSLCMLRDG------- 299 (626)
T ss_pred -----ccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCC---------ceEEeEeeecCCceEEEEEecCc-------
Confidence 112236799999999997 78999999999999854 23344445999999999998876
Q ss_pred ccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCC--ccc--cccccc-------ccccCCCCCCCCCCCCCC
Q 000268 463 ADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSH--PKA--ARWTQA-------YHLKVPPPPMPPQPPRGG 531 (1757)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~--~~~--~~w~~~-------~~l~~~~~~~~~~~~~~~ 531 (1757)
.|++|+.|..|..||-.-.+.. ... ....+. +.+......+........
T Consensus 300 --------------------tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~ 359 (626)
T KOG2106|consen 300 --------------------TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENG 359 (626)
T ss_pred --------------------cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCC
Confidence 7888999999999983321110 000 000000 000000000001111223
Q ss_pred CceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000268 532 PRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1757)
Q Consensus 532 ~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWD 611 (1757)
......+|......++..|+...+++++.|+.+++|+ ..+++.+.. -..++.|+.|+|. + .+|.|...|...+.|
T Consensus 360 f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhps-g-~va~Gt~~G~w~V~d 434 (626)
T KOG2106|consen 360 FTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPS-G-VVAVGTATGRWFVLD 434 (626)
T ss_pred ceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCc-c-eEEEeeccceEEEEe
Confidence 3445677888899999999999999999999999999 555655543 3466889999994 4 888999999999999
Q ss_pred CCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc--------ccccccceeecCCCccEEEccCCc
Q 000268 612 IWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGES--------QKDAKYDQFFLGDYRPLVQDTYGN 683 (1757)
Q Consensus 612 l~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~tGe~--------~~~~~~~~~fs~D~r~Li~d~~g~ 683 (1757)
..+...+..-. ...++..++|+|+|.+||+|+.|+.|+||.+..+.. .......+-|++|...|...+.++
T Consensus 435 ~e~~~lv~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~ 513 (626)
T KOG2106|consen 435 TETQDLVTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDY 513 (626)
T ss_pred cccceeEEEEe-cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCce
Confidence 98865555444 488999999999999999999999999999976432 223335668999999988766664
Q ss_pred -eeecccccccCcCCCCCcccCCCCCCCCCcchhhhhc--ccccccceEECCCCCeEEEeeCCCCCCceEeeccCCcccc
Q 000268 684 -VLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQ--RRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVM 760 (1757)
Q Consensus 684 -vlD~~tql~phl~~l~~~L~D~~~~p~p~~~Q~l~~~--r~~~v~~lAfSPDG~~LAvg~d~s~~~~v~l~~l~~~~~l 760 (1757)
++......++...++. |..-..+...+.-.+.+ ....+.+++-|.+..+||+| ...+.++++...-....
T Consensus 514 eiLyW~~~~~~~~ts~k----DvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~g---dd~g~v~lf~yPc~s~r 586 (626)
T KOG2106|consen 514 EILYWKPSECKQITSVK----DVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASG---DDFGKVHLFSYPCSSPR 586 (626)
T ss_pred EEEEEccccCcccceec----ceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhcc---ccCceEEEEccccCCCc
Confidence 3332233333333322 22222222111111111 12336678889999999999 55577777765311111
Q ss_pred -----cCCCccccceeeeCCCCCccc
Q 000268 761 -----IDPLPEFIDVMDWEPENEVQS 781 (1757)
Q Consensus 761 -----~~plp~~i~~~~~sPDg~~ls 781 (1757)
......+++.++|.-+...+.
T Consensus 587 A~~he~~ghs~~vt~V~Fl~~d~~li 612 (626)
T KOG2106|consen 587 APSHEYGGHSSHVTNVAFLCKDSHLI 612 (626)
T ss_pred ccceeeccccceeEEEEEeeCCceEE
Confidence 112346788999998866654
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-26 Score=246.00 Aligned_cols=290 Identities=20% Similarity=0.320 Sum_probs=250.6
Q ss_pred EEEccCCCCEEEEEECC---CCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEE
Q 000268 237 KRVRGHRNAVYCAIFDR---SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1757)
Q Consensus 237 ~tL~GH~~~V~~VaFSP---DG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWD 313 (1757)
.+-.||+.+|..++||| +|-+|++++.||.-.+-+-+||..+.++.||.+.|++..+..+....|+++.|-+.+|||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 45679999999999986 899999999999999999999999999999999999999999988999999999999999
Q ss_pred CCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCc
Q 000268 314 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 393 (1757)
Q Consensus 314 l~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~ 393 (1757)
.-+|..+..|. |...|.+++|+.|.. +|++|+.+..++|||++..+.. .....+|.+
T Consensus 88 a~tgdelhsf~-hkhivk~~af~~ds~---~lltgg~ekllrvfdln~p~Ap-------------------p~E~~ghtg 144 (334)
T KOG0278|consen 88 AVTGDELHSFE-HKHIVKAVAFSQDSN---YLLTGGQEKLLRVFDLNRPKAP-------------------PKEISGHTG 144 (334)
T ss_pred hhhhhhhhhhh-hhheeeeEEecccch---hhhccchHHHhhhhhccCCCCC-------------------chhhcCCCC
Confidence 99999999886 889999999999987 8999999999999999765422 223456888
Q ss_pred ceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCc
Q 000268 394 QIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1757)
Q Consensus 394 ~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~ 473 (1757)
.|..+.|....+.|++.+.|++||+||.+++. .+..+. ....|+++.++++|
T Consensus 145 ~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt---------~v~sL~-~~s~VtSlEvs~dG------------------ 196 (334)
T KOG0278|consen 145 GIRTVLWCHEDKCILSSADDKTVRLWDHRTGT---------EVQSLE-FNSPVTSLEVSQDG------------------ 196 (334)
T ss_pred cceeEEEeccCceEEeeccCCceEEEEeccCc---------EEEEEe-cCCCCcceeeccCC------------------
Confidence 99999999999999999999999999998753 333333 35578899999886
Q ss_pred ccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCC
Q 000268 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 553 (1757)
Q Consensus 474 ~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~ 553 (1757)
.+++....+.|++||..+.... ........|.+..++|+..
T Consensus 197 ---------~ilTia~gssV~Fwdaksf~~l------------------------------Ks~k~P~nV~SASL~P~k~ 237 (334)
T KOG0278|consen 197 ---------RILTIAYGSSVKFWDAKSFGLL------------------------------KSYKMPCNVESASLHPKKE 237 (334)
T ss_pred ---------CEEEEecCceeEEeccccccce------------------------------eeccCccccccccccCCCc
Confidence 7888888899999999863211 1122345688889999999
Q ss_pred EEEEEecCCeEEEEECCCCceEEEE-eCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce
Q 000268 554 FVLAAIMDCRICVWNAADGSLVHSL-TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIP 617 (1757)
Q Consensus 554 ~LaSGs~DG~I~IWDl~tgkll~~L-~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~ 617 (1757)
++++|+.|+.++.||..+|..+..+ ++|.++|.||.|+| ++.+.++|+.||+|+||....++.
T Consensus 238 ~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP-dGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 238 FFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP-DGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred eEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECC-CCceeeccCCCceEEEEEecCCCc
Confidence 9999999999999999999999886 89999999999999 777889999999999999876654
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-25 Score=241.45 Aligned_cols=294 Identities=18% Similarity=0.245 Sum_probs=236.5
Q ss_pred EEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCC
Q 000268 238 RVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG 317 (1757)
Q Consensus 238 tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg 317 (1757)
.|.||.-+++-+.|+.+|.+|++++.|.++.||-..+|+.+.++.||.+.|+|+++..+.++|++|+.|.++++||+++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEecCCCCceEEEEecCCCCceEEEEEEe-----CCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCC
Q 000268 318 LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS-----DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1757)
Q Consensus 318 ~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs-----~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~ 392 (1757)
+++..+. -..+|..+.|++++. +++... ..+.|.++|++....... ...+......+.
T Consensus 85 k~la~~k-~~~~Vk~~~F~~~gn---~~l~~tD~~mg~~~~v~~fdi~~~~~~~~-------------s~ep~~kI~t~~ 147 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSFGGN---LILASTDKQMGYTCFVSVFDIRDDSSDID-------------SEEPYLKIPTPD 147 (327)
T ss_pred cEEEEee-cCCeeEEEeeccCCc---EEEEEehhhcCcceEEEEEEccCChhhhc-------------ccCceEEecCCc
Confidence 9999987 567899999999986 444333 346789999874331000 000011112345
Q ss_pred cceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCC
Q 000268 393 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 472 (1757)
Q Consensus 393 ~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~ 472 (1757)
..++.+.|.|-+.+|++|..+|.|.+||++++. ..+.....|...|+.++++++.
T Consensus 148 skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~--------~~v~s~~~h~~~Ind~q~s~d~----------------- 202 (327)
T KOG0643|consen 148 SKITSALWGPLGETIIAGHEDGSISIYDARTGK--------ELVDSDEEHSSKINDLQFSRDR----------------- 202 (327)
T ss_pred cceeeeeecccCCEEEEecCCCcEEEEEcccCc--------eeeechhhhccccccccccCCc-----------------
Confidence 678999999999999999999999999998753 3455667799999999999986
Q ss_pred cccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCC
Q 000268 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN 552 (1757)
Q Consensus 473 ~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG 552 (1757)
.++++++.|.+.++||+.+.. .........+|++.+++|-.
T Consensus 203 ---------T~FiT~s~Dttakl~D~~tl~------------------------------v~Kty~te~PvN~aaisP~~ 243 (327)
T KOG0643|consen 203 ---------TYFITGSKDTTAKLVDVRTLE------------------------------VLKTYTTERPVNTAAISPLL 243 (327)
T ss_pred ---------ceEEecccCccceeeecccee------------------------------eEEEeeecccccceeccccc
Confidence 699999999999999998633 23334456789999999988
Q ss_pred CEEEEEecCCeEEEE--ECCCC------------ceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000268 553 RFVLAAIMDCRICVW--NAADG------------SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1757)
Q Consensus 553 ~~LaSGs~DG~I~IW--Dl~tg------------kll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~ 613 (1757)
.+++.|+.-...-|= ..+.| +.+..++||-++|++|+||| ++...+|||.||.|+|.-+.
T Consensus 244 d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP-dGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 244 DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP-DGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECC-CCcccccCCCCceEEEEEec
Confidence 888887643222121 11222 34667889999999999999 66777899999999997553
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-24 Score=241.71 Aligned_cols=295 Identities=19% Similarity=0.279 Sum_probs=241.5
Q ss_pred cceeEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC--CceE
Q 000268 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN--DCII 309 (1757)
Q Consensus 232 ~~k~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~--DGtI 309 (1757)
.+++.+.|+.-.+.|+++.|+++|.+|++++.|-+|+|||..+|+.++++..+.-.|..++|......++.++. |.+|
T Consensus 3 s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 3 SFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred ccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 45666777777889999999999999999999999999999999999999999899999999988877777776 8899
Q ss_pred EEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCC
Q 000268 310 RVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 389 (1757)
Q Consensus 310 rVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~ 389 (1757)
+..++.+.+.++.+.||...|++|+.+|-+. .+++++.|++|++||++..++...+.+.
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d---~FlS~S~D~tvrLWDlR~~~cqg~l~~~------------------ 141 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDD---TFLSSSLDKTVRLWDLRVKKCQGLLNLS------------------ 141 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCC---eEEecccCCeEEeeEecCCCCceEEecC------------------
Confidence 9999999999999999999999999999886 8999999999999999988776666432
Q ss_pred CCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCC
Q 000268 390 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 469 (1757)
Q Consensus 390 ~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~ 469 (1757)
.-..+||.|.|-++|++.....|++||++.... .|..............+.|.|+|+|
T Consensus 142 ----~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dk----gPF~tf~i~~~~~~ew~~l~FS~dG-------------- 199 (311)
T KOG1446|consen 142 ----GRPIAAFDPEGLIFALANGSELIKLYDLRSFDK----GPFTTFSITDNDEAEWTDLEFSPDG-------------- 199 (311)
T ss_pred ----CCcceeECCCCcEEEEecCCCeEEEEEecccCC----CCceeEccCCCCccceeeeEEcCCC--------------
Confidence 123679999999999999888999999986321 2222222222556788999999998
Q ss_pred CCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCC---CeeEE
Q 000268 470 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR---GVNMI 546 (1757)
Q Consensus 470 ~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~---~VtsV 546 (1757)
..++.+...+.+.+.|.-++.... .+..+.. --...
T Consensus 200 ------------K~iLlsT~~s~~~~lDAf~G~~~~-----------------------------tfs~~~~~~~~~~~a 238 (311)
T KOG1446|consen 200 ------------KSILLSTNASFIYLLDAFDGTVKS-----------------------------TFSGYPNAGNLPLSA 238 (311)
T ss_pred ------------CEEEEEeCCCcEEEEEccCCcEee-----------------------------eEeeccCCCCcceeE
Confidence 688888889999999877644211 1111111 12467
Q ss_pred EEcCCCCEEEEEecCCeEEEEECCCCceEEEEeC-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000268 547 VWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTG-HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1757)
Q Consensus 547 afSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~g-H~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~ 613 (1757)
+|+||+++|++|+.||+|.+|++.+|..+..+.+ +.+.+.++.|.| .-.++ ++.+..+.+|=..
T Consensus 239 ~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP-~~~mf--~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 239 TFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNP-RYAMF--VSASSNLVFWLPD 303 (311)
T ss_pred EECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCC-ceeee--eecCceEEEEecc
Confidence 8999999999999999999999999999999998 789999999988 43444 4456778888654
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=278.37 Aligned_cols=294 Identities=19% Similarity=0.369 Sum_probs=219.1
Q ss_pred cccceeEEEEc-cCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecC----------CCCeEEEEEcC---
Q 000268 230 VQKMQNIKRVR-GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGH----------EGDITDLAVSS--- 295 (1757)
Q Consensus 230 ~~~~k~l~tL~-GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH----------~~~VtsLafSP--- 295 (1757)
+......+.+. +|.++|+|+.||+||+|||+||.||.|+||.+..-.....-.+. .+.+..+..++
T Consensus 253 lsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~ 332 (712)
T KOG0283|consen 253 LSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKI 332 (712)
T ss_pred ceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccc
Confidence 33444556677 99999999999999999999999999999998653321110000 01111111111
Q ss_pred --CCCEEEEEeCCceEEEEECC----CCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceee
Q 000268 296 --NNALVASASNDCIIRVWRLP----DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIY 369 (1757)
Q Consensus 296 --Dg~lLASgS~DGtIrVWDl~----tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~ 369 (1757)
.....-.+.....+ +.... ..+++..+.||.+.|..|.|+.++ +|++++.|.||++|++....|+..+
T Consensus 333 ~~~~s~~~~~~~s~~~-~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~----fLLSSSMDKTVRLWh~~~~~CL~~F- 406 (712)
T KOG0283|consen 333 SSRTSSSRKGSQSPCV-LLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN----FLLSSSMDKTVRLWHPGRKECLKVF- 406 (712)
T ss_pred cccccccccccCCccc-cCCCccccccccchhhhhccchhheecccccCC----eeEeccccccEEeecCCCcceeeEE-
Confidence 11112222222332 22222 237788899999999999999986 8999999999999999999988887
Q ss_pred cCCCCccccCCCCCCCCCCCCCCcceEEEEECC-CCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceE
Q 000268 370 IPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNY 448 (1757)
Q Consensus 370 l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSp-dG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~s 448 (1757)
.|...|+|++|+| |.++|++|+-||.||||++..
T Consensus 407 --------------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d------------------------- 441 (712)
T KOG0283|consen 407 --------------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISD------------------------- 441 (712)
T ss_pred --------------------ecCCeeEEEEecccCCCcEeecccccceEEeecCc-------------------------
Confidence 3788999999999 789999999999999999832
Q ss_pred EEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCC
Q 000268 449 VQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPP 528 (1757)
Q Consensus 449 LafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~ 528 (1757)
..|..|.=
T Consensus 442 ------------------------------------------~~Vv~W~D------------------------------ 449 (712)
T KOG0283|consen 442 ------------------------------------------KKVVDWND------------------------------ 449 (712)
T ss_pred ------------------------------------------CeeEeehh------------------------------
Confidence 12333310
Q ss_pred CCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEe--CC------CCCeEEEEEecCCCcEEEE
Q 000268 529 RGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT--GH------TESTYVLDVHPFNPRIAMS 600 (1757)
Q Consensus 529 ~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~--gH------~~~VtsLafSPdd~~lLaS 600 (1757)
-..-|++++|+|||++.++|+.+|.+++|++...++...+. -| ...|+++.|.|.+..-|+.
T Consensus 450 ----------l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLV 519 (712)
T KOG0283|consen 450 ----------LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLV 519 (712)
T ss_pred ----------hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEE
Confidence 11358899999999999999999999999998777665432 11 2279999999966654556
Q ss_pred EeCCCcEEEEeCCCCceEEEEeecCc--ceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 000268 601 AGYDGKTIVWDIWEGIPIRIYEISRF--RLVDGKFSPDGASIILSDDVGQLYILNTGQ 656 (1757)
Q Consensus 601 gs~DG~IrIWDl~tg~~l~~l~~~~~--~VtslafSPDGk~LAsgs~DG~I~IWdl~t 656 (1757)
.+.|..|+|+|..+..++..|.+... .-....|+.||++|+++++|..|+||+...
T Consensus 520 TSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 520 TSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 68899999999999999999886543 335679999999999999999999999854
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-25 Score=253.36 Aligned_cols=300 Identities=21% Similarity=0.355 Sum_probs=239.8
Q ss_pred CCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCC---EEEEEeCCceEEEEECCCCC
Q 000268 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA---LVASASNDCIIRVWRLPDGL 318 (1757)
Q Consensus 242 H~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~---lLASgS~DGtIrVWDl~tg~ 318 (1757)
|.+.|.+|... +++|+||+.||+++|||.. |+...++.||.+.|.+++|.-.+. .+++++.|.++++|-++.+.
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~ 180 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE 180 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence 88889998887 7899999999999999975 899999999999999998865433 59999999999999998774
Q ss_pred c----eEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCc--cceeecC---CCCccccCCCCCCCCCCC
Q 000268 319 P----ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQF--SPRIYIP---RPSDAVAGRNMAPSSSAG 389 (1757)
Q Consensus 319 ~----l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~--~~~i~l~---~~~~~~~g~~~~~~~~~~ 389 (1757)
. +...+||...|-+|...+++. .+++|+.|.+|.||+...... ....... .......+....+.....
T Consensus 181 ~~~~~~~~~~GHk~~V~sVsv~~sgt---r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~ 257 (423)
T KOG0313|consen 181 NKVKALKVCRGHKRSVDSVSVDSSGT---RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE 257 (423)
T ss_pred hhhhHHhHhcccccceeEEEecCCCC---eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec
Confidence 3 344569999999999999997 999999999999999332211 0000000 000011133445566778
Q ss_pred CCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCC
Q 000268 390 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 469 (1757)
Q Consensus 390 ~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~ 469 (1757)
+|...|.++.|++ ...+++++.|.+|++||+.++.. +..+.+ ...++++..+|..
T Consensus 258 GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~---------~~~~~~-~ksl~~i~~~~~~-------------- 312 (423)
T KOG0313|consen 258 GHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL---------KSTLTT-NKSLNCISYSPLS-------------- 312 (423)
T ss_pred ccccceeeEEEcC-CCceEeecccceEEEEEeecccc---------eeeeec-CcceeEeeccccc--------------
Confidence 9999999999997 66899999999999999977543 222222 3456788887753
Q ss_pred CCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEc
Q 000268 470 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWS 549 (1757)
Q Consensus 470 ~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafS 549 (1757)
.+|++|+.|..|++||++++. .....+.+.+|...|.++.|+
T Consensus 313 ------------~Ll~~gssdr~irl~DPR~~~--------------------------gs~v~~s~~gH~nwVssvkws 354 (423)
T KOG0313|consen 313 ------------KLLASGSSDRHIRLWDPRTGD--------------------------GSVVSQSLIGHKNWVSSVKWS 354 (423)
T ss_pred ------------ceeeecCCCCceeecCCCCCC--------------------------CceeEEeeecchhhhhheecC
Confidence 689999999999999999743 123456788999999999999
Q ss_pred CCCCE-EEEEecCCeEEEEECCCCc-eEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000268 550 LDNRF-VLAAIMDCRICVWNAADGS-LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1757)
Q Consensus 550 PDG~~-LaSGs~DG~I~IWDl~tgk-ll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl 612 (1757)
|...+ |++|+.|+++++||+++.+ ++..+.+|.+.|.++.|.. +.++++||.|.+|+|+.-
T Consensus 355 p~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~--~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 355 PTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE--GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred CCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC--CceEEeccCcceEEEecc
Confidence 97765 6789999999999999887 9999999999999999975 668899999999999864
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-25 Score=259.20 Aligned_cols=302 Identities=21% Similarity=0.302 Sum_probs=232.4
Q ss_pred ceeEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCe----EEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCc
Q 000268 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY----CLASCR-GHEGDITDLAVSSNNALVASASNDC 307 (1757)
Q Consensus 233 ~k~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~----~l~tL~-gH~~~VtsLafSPDg~lLASgS~DG 307 (1757)
...-..|.+|+..|.++++.|.|-+|++||.|.+|++||+.... ..+.|. .....|.++.|++.|..|++.+...
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA 236 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc
Confidence 34456789999999999999999999999999999999996432 122222 3456799999999999888888888
Q ss_pred eEEEEECCCCCce-------------EEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCC
Q 000268 308 IIRVWRLPDGLPI-------------SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPS 374 (1757)
Q Consensus 308 tIrVWDl~tg~~l-------------~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~ 374 (1757)
.++|+|-. |..+ ...+||...++|.+|+|+.+. .|++++.||+++|||+...+....+..+.
T Consensus 237 qakl~DRd-G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~--~FlT~s~DgtlRiWdv~~~k~q~qVik~k-- 311 (641)
T KOG0772|consen 237 QAKLLDRD-GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE--EFLTCSYDGTLRIWDVNNTKSQLQVIKTK-- 311 (641)
T ss_pred ceeEEccC-CceeeeeeccchhhhhhhccCCceeeeeccccccCccc--ceEEecCCCcEEEEecCCchhheeEEeec--
Confidence 99999953 3222 223689999999999999764 79999999999999998765333322111
Q ss_pred ccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCC--CceEEEEc
Q 000268 375 DAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEN--DVNYVQFS 452 (1757)
Q Consensus 375 ~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~--~V~sLafS 452 (1757)
...+..-.++.|+|+++|.+||+|+.||.|.+|+..... .......-..|.. .|++|.|+
T Consensus 312 ------------~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~------v~p~~~vk~AH~~g~~Itsi~FS 373 (641)
T KOG0772|consen 312 ------------PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRT------VRPVMKVKDAHLPGQDITSISFS 373 (641)
T ss_pred ------------cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcc------cccceEeeeccCCCCceeEEEec
Confidence 122445568999999999999999999999999984321 1223445567877 89999999
Q ss_pred cCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCC
Q 000268 453 GCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGP 532 (1757)
Q Consensus 453 pdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~ 532 (1757)
++| ++|++-+.|+++++||++..+... ..
T Consensus 374 ~dg--------------------------~~LlSRg~D~tLKvWDLrq~kkpL--~~----------------------- 402 (641)
T KOG0772|consen 374 YDG--------------------------NYLLSRGFDDTLKVWDLRQFKKPL--NV----------------------- 402 (641)
T ss_pred ccc--------------------------chhhhccCCCceeeeeccccccch--hh-----------------------
Confidence 997 799999999999999999633110 00
Q ss_pred ceeecCCCCCeeEEEEcCCCCEEEEEe------cCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCc
Q 000268 533 RQRILPTPRGVNMIVWSLDNRFVLAAI------MDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGK 606 (1757)
Q Consensus 533 ~~~l~~h~~~VtsVafSPDG~~LaSGs------~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~ 606 (1757)
..-+.....-+.++|||+.++|++|. ..|.+++||..+...+..+.-....|..+.|||-=++++ .|+.||+
T Consensus 403 -~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~-~gsgdG~ 480 (641)
T KOG0772|consen 403 -RTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIF-AGSGDGT 480 (641)
T ss_pred -hcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhhee-eecCCCc
Confidence 01112233456789999999999976 357899999999999999988888899999999544554 5677899
Q ss_pred EEEE
Q 000268 607 TIVW 610 (1757)
Q Consensus 607 IrIW 610 (1757)
++||
T Consensus 481 ~~vy 484 (641)
T KOG0772|consen 481 AHVY 484 (641)
T ss_pred eEEE
Confidence 9876
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-25 Score=242.67 Aligned_cols=295 Identities=15% Similarity=0.231 Sum_probs=244.1
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecC
Q 000268 281 CRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360 (1757)
Q Consensus 281 L~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~ 360 (1757)
+.||..+++.|.++.+|.+|++++.|.++.||-..+|+.+.++.||++.|+|+...-+.+ +|++|+.|.++++||+.
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~---~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSK---HLITGSADQTAKLWDVE 82 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcc---eeeeccccceeEEEEcC
Confidence 678999999999999999999999999999999999999999999999999999998877 99999999999999999
Q ss_pred CCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeC-----CceEEEecCCCCCCCCCCCCCcc
Q 000268 361 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-----DTLARVWNACKPNTDDSDQPNHE 435 (1757)
Q Consensus 361 tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~-----DG~IrVWDl~t~~~~~s~~~~~~ 435 (1757)
+|+++..+.. ...|..+.|+++|++++.... .+.|.++|++..... .....+
T Consensus 83 tGk~la~~k~---------------------~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~--~~s~ep 139 (327)
T KOG0643|consen 83 TGKQLATWKT---------------------NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSD--IDSEEP 139 (327)
T ss_pred CCcEEEEeec---------------------CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhh--hcccCc
Confidence 9998887743 455899999999998877654 468999999754321 112334
Q ss_pred eeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCccccccccccc
Q 000268 436 IDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYH 515 (1757)
Q Consensus 436 i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~ 515 (1757)
+..+..+...++.+.|.|.+ +.|++|..||.|.+||+++++.
T Consensus 140 ~~kI~t~~skit~a~Wg~l~--------------------------~~ii~Ghe~G~is~~da~~g~~------------ 181 (327)
T KOG0643|consen 140 YLKIPTPDSKITSALWGPLG--------------------------ETIIAGHEDGSISIYDARTGKE------------ 181 (327)
T ss_pred eEEecCCccceeeeeecccC--------------------------CEEEEecCCCcEEEEEcccCce------------
Confidence 66777888999999999876 7999999999999999997541
Q ss_pred ccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCC
Q 000268 516 LKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNP 595 (1757)
Q Consensus 516 l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~ 595 (1757)
.+.....|...|+.+++++|..++++++.|.+.++||+.+-++++++.. ..+|++.+++|...
T Consensus 182 ----------------~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aaisP~~d 244 (327)
T KOG0643|consen 182 ----------------LVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAAISPLLD 244 (327)
T ss_pred ----------------eeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee-cccccceecccccc
Confidence 1122345777999999999999999999999999999999999999874 56799999999666
Q ss_pred cEEEEEeCCCc-E------------EEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 000268 596 RIAMSAGYDGK-T------------IVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 656 (1757)
Q Consensus 596 ~lLaSgs~DG~-I------------rIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~t 656 (1757)
.+++-||.+.. | ++|++-..+.+..+.+|-++|.+++|+|||+..++|+.||.|++.-+..
T Consensus 245 ~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 245 HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred eEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 66555554321 1 2222222345667788999999999999999999999999999987643
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-26 Score=261.01 Aligned_cols=289 Identities=23% Similarity=0.322 Sum_probs=240.5
Q ss_pred eEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCe--EEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEE
Q 000268 235 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY--CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1757)
Q Consensus 235 ~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~--~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVW 312 (1757)
....|..|.+.|..+.|-++...|+||+.|..|++|++..++ .+.+|.|..+.|+++.|.+++.++++++.|+.+++|
T Consensus 167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLW 246 (459)
T ss_pred hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeee
Confidence 345688899999999999998999999999999999997766 677888999999999999999999999999999999
Q ss_pred ECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCC
Q 000268 313 RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1757)
Q Consensus 313 Dl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~ 392 (1757)
++...+...+|.||+..|+++.|.-... .+++|+.|.+|++||+....|...+.. .
T Consensus 247 nvd~~r~~~TLsGHtdkVt~ak~~~~~~---~vVsgs~DRtiK~WDl~k~~C~kt~l~---------------------~ 302 (459)
T KOG0288|consen 247 NVDSLRLRHTLSGHTDKVTAAKFKLSHS---RVVSGSADRTIKLWDLQKAYCSKTVLP---------------------G 302 (459)
T ss_pred eccchhhhhhhcccccceeeehhhcccc---ceeeccccchhhhhhhhhhheeccccc---------------------c
Confidence 9999999999999999999999998764 599999999999999998877666532 2
Q ss_pred cceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCC
Q 000268 393 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 472 (1757)
Q Consensus 393 ~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~ 472 (1757)
..+..|+.+ +..+++|..|+.|++||++++ ........+. .|+++..++++
T Consensus 303 S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~---------~~~~sv~~gg-~vtSl~ls~~g----------------- 353 (459)
T KOG0288|consen 303 SQCNDIVCS--ISDVISGHFDKKVRFWDIRSA---------DKTRSVPLGG-RVTSLDLSMDG----------------- 353 (459)
T ss_pred ccccceEec--ceeeeecccccceEEEeccCC---------ceeeEeecCc-ceeeEeeccCC-----------------
Confidence 234455554 667899999999999999763 3444555554 89999999886
Q ss_pred cccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCC
Q 000268 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN 552 (1757)
Q Consensus 473 ~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG 552 (1757)
..|++++.|.++.+.|+++........ + .-.......+.++|||++
T Consensus 354 ---------~~lLsssRDdtl~viDlRt~eI~~~~s----A---------------------~g~k~asDwtrvvfSpd~ 399 (459)
T KOG0288|consen 354 ---------LELLSSSRDDTLKVIDLRTKEIRQTFS----A---------------------EGFKCASDWTRVVFSPDG 399 (459)
T ss_pred ---------eEEeeecCCCceeeeecccccEEEEee----c---------------------cccccccccceeEECCCC
Confidence 578888999999999999744211100 0 001112348899999999
Q ss_pred CEEEEEecCCeEEEEECCCCceEEEEeCCCC--CeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000268 553 RFVLAAIMDCRICVWNAADGSLVHSLTGHTE--STYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1757)
Q Consensus 553 ~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~--~VtsLafSPdd~~lLaSgs~DG~IrIWD 611 (1757)
.|+++|+.||.|+||++.+|++...+..... .|++++|+| .+..|++++.++.+.+|.
T Consensus 400 ~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~-sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 400 SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP-SGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC-CCchhhcccCCcceEecC
Confidence 9999999999999999999999998876555 499999999 677888999999999993
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-24 Score=263.43 Aligned_cols=384 Identities=18% Similarity=0.234 Sum_probs=293.8
Q ss_pred CccccccCCcchhh---hccccccCccccccceeEEEEccCCCCEEEEEECCCCCE-EEEEcCCceEEEEecCCCeEEEE
Q 000268 205 GGFTRHHRAPSIRA---ACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRY-VITGSDDRLVKIWSMETAYCLAS 280 (1757)
Q Consensus 205 g~~~~~~~~~~l~s---~~~~~a~~~~~~~~~k~l~tL~GH~~~V~~VaFSPDG~~-LATGS~DGtIkIWDl~tg~~l~t 280 (1757)
..++.....|-+-. .+.++.+....+...+.+.+|+.-.+.|+.++|.-||.. ||+|+..|.+-+||++..+++..
T Consensus 203 s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v 282 (910)
T KOG1539|consen 203 SRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINV 282 (910)
T ss_pred cceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeee
Confidence 34444444444322 233445555667778888899866799999999999975 56777789999999998888877
Q ss_pred Ee-cCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCC--C--CceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEE
Q 000268 281 CR-GHEGDITDLAVSSNNALVASASNDCIIRVWRLPD--G--LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355 (1757)
Q Consensus 281 L~-gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~t--g--~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIr 355 (1757)
++ .|.+.|..+.|.+....|++++.|..+++|=..+ | +.++.-.||..+..||.|..... +.+++++.|++++
T Consensus 283 ~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g--~~ilsa~~Drt~r 360 (910)
T KOG1539|consen 283 TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQG--HFILSAKQDRTLR 360 (910)
T ss_pred eeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCc--EEEEecccCcchh
Confidence 66 7999999999999999999999999999985543 4 55667789999999999985433 4899999999999
Q ss_pred EEecCCCCccceeec------------------CCCCcc-cc--------------------------------CCCCCC
Q 000268 356 IWDARYSQFSPRIYI------------------PRPSDA-VA--------------------------------GRNMAP 384 (1757)
Q Consensus 356 IWDl~tg~~~~~i~l------------------~~~~~~-~~--------------------------------g~~~~~ 384 (1757)
.+++......+.+.. .-+... .. |.....
T Consensus 361 ~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~ 440 (910)
T KOG1539|consen 361 SFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLD 440 (910)
T ss_pred hhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEec
Confidence 988753322111100 000000 00 111111
Q ss_pred CCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccc
Q 000268 385 SSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLAD 464 (1757)
Q Consensus 385 ~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~ 464 (1757)
..........+++++.++.|++.+.|+..|.|-+|++.++-. ......-..|...|++++...-.
T Consensus 441 ~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~------r~sf~~~~ah~~~V~gla~D~~n--------- 505 (910)
T KOG1539|consen 441 PKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH------RKSFGDSPAHKGEVTGLAVDGTN--------- 505 (910)
T ss_pred CccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCee------ecccccCccccCceeEEEecCCC---------
Confidence 111222446789999999999999999999999999966422 11112235899999999987543
Q ss_pred CCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCee
Q 000268 465 SSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVN 544 (1757)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~Vt 544 (1757)
..+++++.+|.+++||+..... .....-...+.
T Consensus 506 -----------------~~~vsa~~~Gilkfw~f~~k~l------------------------------~~~l~l~~~~~ 538 (910)
T KOG1539|consen 506 -----------------RLLVSAGADGILKFWDFKKKVL------------------------------KKSLRLGSSIT 538 (910)
T ss_pred -----------------ceEEEccCcceEEEEecCCcce------------------------------eeeeccCCCcc
Confidence 6899999999999999985321 11112334677
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeec
Q 000268 545 MIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS 624 (1757)
Q Consensus 545 sVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~ 624 (1757)
++..+.....++.+..|-.|.++|+.+.+.++.|.||++.|++++||| ++++|++++.|++|++||+.++.++-.+. -
T Consensus 539 ~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~-DgrWlisasmD~tIr~wDlpt~~lID~~~-v 616 (910)
T KOG1539|consen 539 GIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP-DGRWLISASMDSTIRTWDLPTGTLIDGLL-V 616 (910)
T ss_pred eeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCC-CCcEEEEeecCCcEEEEeccCcceeeeEe-c
Confidence 888888888999999999999999999999999999999999999999 88999999999999999999999998886 5
Q ss_pred CcceEEEEEcCCCCEEEEEeCC-CeEEEEEC
Q 000268 625 RFRLVDGKFSPDGASIILSDDV-GQLYILNT 654 (1757)
Q Consensus 625 ~~~VtslafSPDGk~LAsgs~D-G~I~IWdl 654 (1757)
..+.+++.|||+|.+||++..| ..|++|.-
T Consensus 617 d~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 617 DSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred CCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 6688999999999999999776 68999973
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-24 Score=233.20 Aligned_cols=287 Identities=20% Similarity=0.248 Sum_probs=240.7
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceE--EecCCCCceEEEEecCCCCceEEEEEEeCCCcEEE
Q 000268 279 ASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS--VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356 (1757)
Q Consensus 279 ~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~--~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrI 356 (1757)
+.+++|.+.|.+|+|+.+|..||+|+.|+++.||++..++... ...+|++.|-.++|.|... ..|++++.|.+|++
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~--d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP--DLFATASGDKTIRI 91 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC--cceEEecCCceEEE
Confidence 4567899999999999999999999999999999998875554 3468999999999999765 38999999999999
Q ss_pred EecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcce
Q 000268 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 436 (1757)
Q Consensus 357 WDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i 436 (1757)
||++.+++...+.. ...=.-++|+|+|.++++|+.|..|.+.|.++.+...
T Consensus 92 wd~r~~k~~~~i~~---------------------~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~-------- 142 (313)
T KOG1407|consen 92 WDIRSGKCTARIET---------------------KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVN-------- 142 (313)
T ss_pred EEeccCcEEEEeec---------------------cCcceEEEEcCCCCEEEEecCcccEEEEEecccceee--------
Confidence 99999998877643 2223467899999999999999999999998643221
Q ss_pred eeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccc
Q 000268 437 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHL 516 (1757)
Q Consensus 437 ~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l 516 (1757)
-....-.+..+.|+.+ +++++....-|+|.|.....
T Consensus 143 --~~~~~~e~ne~~w~~~--------------------------nd~Fflt~GlG~v~ILsyps---------------- 178 (313)
T KOG1407|consen 143 --EEQFKFEVNEISWNNS--------------------------NDLFFLTNGLGCVEILSYPS---------------- 178 (313)
T ss_pred --hhcccceeeeeeecCC--------------------------CCEEEEecCCceEEEEeccc----------------
Confidence 1222334666777633 36777777789999876543
Q ss_pred cCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCc
Q 000268 517 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR 596 (1757)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~ 596 (1757)
-.++..+..|.....||.|+|+|++||+|+.|..+-+||+...-+++.+.-+.-+|..|.||. +++
T Consensus 179 -------------Lkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~-dg~ 244 (313)
T KOG1407|consen 179 -------------LKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH-DGR 244 (313)
T ss_pred -------------cccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEecc-Ccc
Confidence 345667788998999999999999999999999999999999999999999999999999998 889
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCC---------CeEEEEECC
Q 000268 597 IAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDV---------GQLYILNTG 655 (1757)
Q Consensus 597 lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~D---------G~I~IWdl~ 655 (1757)
+||+|+.|..|-|=++.+|..++.+. +.++...++|+|...+||.+++| |.|++|.+.
T Consensus 245 ~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 245 MLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred eeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 99999999999999999999999997 77889999999999999987543 567777654
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.9e-24 Score=232.34 Aligned_cols=285 Identities=19% Similarity=0.281 Sum_probs=240.3
Q ss_pred EEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEE--EecCCCCeEEEEEcCC-CCEEEEEeCCceEEEEE
Q 000268 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLAS--CRGHEGDITDLAVSSN-NALVASASNDCIIRVWR 313 (1757)
Q Consensus 237 ~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~t--L~gH~~~VtsLafSPD-g~lLASgS~DGtIrVWD 313 (1757)
+.+++|...|.+|+|+-+|..||+|+.|+++.||++..++.+.. .++|.+.|-.++|.|. ..++++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 66889999999999999999999999999999999988766554 4589999999999984 55899999999999999
Q ss_pred CCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCc
Q 000268 314 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 393 (1757)
Q Consensus 314 l~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~ 393 (1757)
+..++++.......+.| -++|+|++. ++++++.|..|.+.|.++.+...... ...
T Consensus 94 ~r~~k~~~~i~~~~eni-~i~wsp~g~---~~~~~~kdD~it~id~r~~~~~~~~~---------------------~~~ 148 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENI-NITWSPDGE---YIAVGNKDDRITFIDARTYKIVNEEQ---------------------FKF 148 (313)
T ss_pred eccCcEEEEeeccCcce-EEEEcCCCC---EEEEecCcccEEEEEecccceeehhc---------------------ccc
Confidence 99999999887555554 488999998 99999999999999998876544332 344
Q ss_pred ceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCc
Q 000268 394 QIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1757)
Q Consensus 394 ~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~ 473 (1757)
.+.-++|+-++.+|+.....|.|.|..... .+++..+..|...+.||.|+|+|
T Consensus 149 e~ne~~w~~~nd~Fflt~GlG~v~ILsyps---------Lkpv~si~AH~snCicI~f~p~G------------------ 201 (313)
T KOG1407|consen 149 EVNEISWNNSNDLFFLTNGLGCVEILSYPS---------LKPVQSIKAHPSNCICIEFDPDG------------------ 201 (313)
T ss_pred eeeeeeecCCCCEEEEecCCceEEEEeccc---------cccccccccCCcceEEEEECCCC------------------
Confidence 577889998888877777789999988742 56788899999999999999997
Q ss_pred ccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCC
Q 000268 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 553 (1757)
Q Consensus 474 ~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~ 553 (1757)
.+|++|+.|..+.+||+.. -.+.+.+..+.-+|+.+.||.||+
T Consensus 202 --------ryfA~GsADAlvSLWD~~E-----------------------------LiC~R~isRldwpVRTlSFS~dg~ 244 (313)
T KOG1407|consen 202 --------RYFATGSADALVSLWDVDE-----------------------------LICERCISRLDWPVRTLSFSHDGR 244 (313)
T ss_pred --------ceEeeccccceeeccChhH-----------------------------hhhheeeccccCceEEEEeccCcc
Confidence 7999999999999999984 123445566778999999999999
Q ss_pred EEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCC---------CcEEEEeC
Q 000268 554 FVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYD---------GKTIVWDI 612 (1757)
Q Consensus 554 ~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~D---------G~IrIWDl 612 (1757)
+||+|+.|..|-|=++.+|..++.+. +.++.+.|+||| ...+||-++.| |.|+||-+
T Consensus 245 ~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP-k~~LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 245 MLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP-KRPLLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred eeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC-CCceeeEEecCCCCccccccceeEEecC
Confidence 99999999999999999999999987 678889999999 66666666544 45666644
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-24 Score=240.45 Aligned_cols=297 Identities=24% Similarity=0.434 Sum_probs=251.9
Q ss_pred cceeEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEE
Q 000268 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRV 311 (1757)
Q Consensus 232 ~~k~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrV 311 (1757)
.+++++.|.||...|+.++.......+.+++.|.+.+||.+++|.|+.++.||.+.|.+|.|++.+.++++++.|++..|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 46788899999999999999988889999999999999999999999999999999999999999999999999999999
Q ss_pred EEC------CC------------------------------C----CceEEecCCCCceEEEEecCCCCceEEEEEEeCC
Q 000268 312 WRL------PD------------------------------G----LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD 351 (1757)
Q Consensus 312 WDl------~t------------------------------g----~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~D 351 (1757)
|.. .. | .++..|.+|.+.|.+..|...++ .+++++.|
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~---Q~vTaSWD 293 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ---QMVTASWD 293 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc---eeeeeecc
Confidence 962 10 1 23556789999999999999887 89999999
Q ss_pred CcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCC
Q 000268 352 GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQ 431 (1757)
Q Consensus 352 GtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~ 431 (1757)
.+..+||++++..+..+ .+|....+.++-+|..+++++.+.|.+.++||++.
T Consensus 294 RTAnlwDVEtge~v~~L--------------------tGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe-------- 345 (481)
T KOG0300|consen 294 RTANLWDVETGEVVNIL--------------------TGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE-------- 345 (481)
T ss_pred ccceeeeeccCceeccc--------------------cCcchhccccccCCcceEEEEeccCceeEeccchh--------
Confidence 99999999999866544 46888899999999999999999999999999963
Q ss_pred CCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCccccccc
Q 000268 432 PNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 511 (1757)
Q Consensus 432 ~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~ 511 (1757)
....+..+.||...|+++.|.-+ +.+++|+.|.+|+|||+++-+
T Consensus 346 aI~sV~VFQGHtdtVTS~vF~~d---------------------------d~vVSgSDDrTvKvWdLrNMR--------- 389 (481)
T KOG0300|consen 346 AIQSVAVFQGHTDTVTSVVFNTD---------------------------DRVVSGSDDRTVKVWDLRNMR--------- 389 (481)
T ss_pred hcceeeeecccccceeEEEEecC---------------------------CceeecCCCceEEEeeecccc---------
Confidence 25567889999999999999865 589999999999999998622
Q ss_pred ccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEE----EEeCCCCCeEE
Q 000268 512 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVH----SLTGHTESTYV 587 (1757)
Q Consensus 512 ~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~----~L~gH~~~Vts 587 (1757)
.++ .......+++.++.+..+..|+.-..+..|++||+....+.+ .-.||...|+|
T Consensus 390 -------------------spl-ATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c 449 (481)
T KOG0300|consen 390 -------------------SPL-ATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTC 449 (481)
T ss_pred -------------------Ccc-eeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeee
Confidence 111 123355678999999999999999999999999996443322 34689999999
Q ss_pred EEEecCCC-cEEEEEeCCCcEEEEeCCCC
Q 000268 588 LDVHPFNP-RIAMSAGYDGKTIVWDIWEG 615 (1757)
Q Consensus 588 LafSPdd~-~lLaSgs~DG~IrIWDl~tg 615 (1757)
++|..... .-|+++|.|..+.-|.+...
T Consensus 450 ~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 450 CAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eeccccCcccccccccccceeeeeEeccc
Confidence 99965222 34668999999999998653
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-23 Score=251.26 Aligned_cols=482 Identities=15% Similarity=0.195 Sum_probs=326.1
Q ss_pred ceeEEEEccCCCCEEEEEECCCCC---EEEEEcCCceEEEEecCCC--eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCc
Q 000268 233 MQNIKRVRGHRNAVYCAIFDRSGR---YVITGSDDRLVKIWSMETA--YCLASCRGHEGDITDLAVSSNNALVASASNDC 307 (1757)
Q Consensus 233 ~k~l~tL~GH~~~V~~VaFSPDG~---~LATGS~DGtIkIWDl~tg--~~l~tL~gH~~~VtsLafSPDg~lLASgS~DG 307 (1757)
...+.++.||.+.|+|+.|-|+.. ++++|+.|+.|++|.+... ..+.++.+|...+.|+ ........+.+.|+
T Consensus 44 ~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv--~a~~~~~~~~~ad~ 121 (764)
T KOG1063|consen 44 ILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCV--VARSSVMTCKAADG 121 (764)
T ss_pred ceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEE--EeeeeEEEeeccCc
Confidence 356788999999999999999888 8999999999999999743 3455666665555444 32222333335677
Q ss_pred eEEEEECCCC--------------------------------------------------CceEEecCCCCceEEEEecC
Q 000268 308 IIRVWRLPDG--------------------------------------------------LPISVLRGHTAAVTAIAFSP 337 (1757)
Q Consensus 308 tIrVWDl~tg--------------------------------------------------~~l~~l~gH~~~VtsLafSP 337 (1757)
++.+|+.+.. +.+..+.||...|.+|+|..
T Consensus 122 ~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~ 201 (764)
T KOG1063|consen 122 TVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFAR 201 (764)
T ss_pred eEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhc
Confidence 7777776211 23456779999999999998
Q ss_pred CCCceEEEEEEeCCCcEEEEecCCCCccc----eeecCCCCcc---ccCCC----CCCCCCCCCCCcceEEEEECCCCCE
Q 000268 338 RPGSVYQLLSSSDDGTCRIWDARYSQFSP----RIYIPRPSDA---VAGRN----MAPSSSAGPQSHQIFCCAFNANGTV 406 (1757)
Q Consensus 338 dg~~~~~LaSgs~DGtIrIWDl~tg~~~~----~i~l~~~~~~---~~g~~----~~~~~~~~~~~~~V~slafSpdG~~ 406 (1757)
.+.+..+|++++.|..|+||.+.-+.... .......... ..... ........+|...|.++.|+|.+..
T Consensus 202 ~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~ 281 (764)
T KOG1063|consen 202 LGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLD 281 (764)
T ss_pred cCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhh
Confidence 77656799999999999999886544221 1111000000 00000 0011334589999999999999999
Q ss_pred EEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEE
Q 000268 407 FVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVT 486 (1757)
Q Consensus 407 LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvS 486 (1757)
|++++.|.++.+|........ -...-.+..+.+.........|+|++ +.+++
T Consensus 282 LLSASaDksmiiW~pd~~tGi--Wv~~vRlGe~gg~a~GF~g~lw~~n~--------------------------~~ii~ 333 (764)
T KOG1063|consen 282 LLSASADKSMIIWKPDENTGI--WVDVVRLGEVGGSAGGFWGGLWSPNS--------------------------NVIIA 333 (764)
T ss_pred heecccCcceEEEecCCccce--EEEEEEeecccccccceeeEEEcCCC--------------------------CEEEE
Confidence 999999999999987542110 00011122233445567778888875 67889
Q ss_pred EcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEE
Q 000268 487 CSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICV 566 (1757)
Q Consensus 487 gS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~I 566 (1757)
-+.-|..++|.... ...|. +...+.+|...|..|+|+|.|.+|++.+.|.+-+|
T Consensus 334 ~g~~Gg~hlWkt~d------~~~w~--------------------~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRl 387 (764)
T KOG1063|consen 334 HGRTGGFHLWKTKD------KTFWT--------------------QEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRL 387 (764)
T ss_pred ecccCcEEEEeccC------cccee--------------------eccccccccccceeeeecCCCCEEEEeccccceee
Confidence 99999999997321 12222 22345689999999999999999999999999999
Q ss_pred EECCCC----ceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC----------------------------
Q 000268 567 WNAADG----SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE---------------------------- 614 (1757)
Q Consensus 567 WDl~tg----kll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~t---------------------------- 614 (1757)
|-.-.. ..+..-+-|.-.++|++|-+ +...+++|.....+++|+...
T Consensus 388 Fa~wg~q~~wHEiaRPQiHGyDl~c~~~vn-~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~Vpa 466 (764)
T KOG1063|consen 388 FARWGRQQEWHEIARPQIHGYDLTCLSFVN-EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPA 466 (764)
T ss_pred ecccccccceeeecccccccccceeeehcc-CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccccc
Confidence 876411 12333356788899999987 566778888888889997521
Q ss_pred ---------------Cce---------------------------------EEEEeecCcceEEEEEcCCCCEEEEEeC-
Q 000268 615 ---------------GIP---------------------------------IRIYEISRFRLVDGKFSPDGASIILSDD- 645 (1757)
Q Consensus 615 ---------------g~~---------------------------------l~~l~~~~~~VtslafSPDGk~LAsgs~- 645 (1757)
|.. ++.+-+|...|++++.+|+|++||+++.
T Consensus 467 LGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS 546 (764)
T KOG1063|consen 467 LGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKS 546 (764)
T ss_pred ccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhh
Confidence 000 1122256778999999999999999854
Q ss_pred ----CCeEEEEECCCCcccccc------ccceeecCCCccEEEccCCceeecccccccCcCCCCCcccCCCCCCCCCcch
Q 000268 646 ----VGQLYILNTGQGESQKDA------KYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQ 715 (1757)
Q Consensus 646 ----DG~I~IWdl~tGe~~~~~------~~~~~fs~D~r~Li~d~~g~vlD~~tql~phl~~l~~~L~D~~~~p~p~~~Q 715 (1757)
...|++|++.+-...+.+ ...+.|++|++.|+.....+.+..-.++ ....+.. .+-
T Consensus 547 ~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~--------~~~~~e~------~fa 612 (764)
T KOG1063|consen 547 SLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQ--------EDIKDEF------RFA 612 (764)
T ss_pred CCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeee--------cccchhh------hhc
Confidence 357999999876554422 2456999999999976666543211111 0010000 011
Q ss_pred hhhhcccccccceEECCCCCeEEEeeCCCCCCceEeeccCCc--ccccC----CCccccceeeeCCC-----CCcccCCC
Q 000268 716 TMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADL--DVMID----PLPEFIDVMDWEPE-----NEVQSDDN 784 (1757)
Q Consensus 716 ~l~~~r~~~v~~lAfSPDG~~LAvg~d~s~~~~v~l~~l~~~--~~l~~----plp~~i~~~~~sPD-----g~~ls~~~ 784 (1757)
....|+.-++...|+||+.++|++ +.+..+.+|...+. +.+-. ++...+++++|.|- +.+++..-
T Consensus 613 -~~k~HtRIIWdcsW~pde~~FaTa---SRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGl 688 (764)
T KOG1063|consen 613 -CLKAHTRIIWDCSWSPDEKYFATA---SRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGL 688 (764)
T ss_pred -cccccceEEEEcccCcccceeEEe---cCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEe
Confidence 123456678999999999999999 99999999998766 43322 34577888888775 22445444
Q ss_pred CCccc
Q 000268 785 DSEYN 789 (1757)
Q Consensus 785 ~s~~~ 789 (1757)
+.+.+
T Consensus 689 e~GeI 693 (764)
T KOG1063|consen 689 EKGEI 693 (764)
T ss_pred cccEE
Confidence 44433
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-23 Score=252.21 Aligned_cols=375 Identities=17% Similarity=0.254 Sum_probs=280.8
Q ss_pred ccceeEEEEccCCCCEEEEEECCCCC---EEEEEcCCceEEEEecCCCe---------------------EEEE------
Q 000268 231 QKMQNIKRVRGHRNAVYCAIFDRSGR---YVITGSDDRLVKIWSMETAY---------------------CLAS------ 280 (1757)
Q Consensus 231 ~~~k~l~tL~GH~~~V~~VaFSPDG~---~LATGS~DGtIkIWDl~tg~---------------------~l~t------ 280 (1757)
.+++.+..|.||.+.|.+++|...+. +||++|.|..|+||.+.-+. .+..
T Consensus 179 d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is 258 (764)
T KOG1063|consen 179 DSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRIS 258 (764)
T ss_pred cceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEe
Confidence 37789999999999999999988665 89999999999999874221 1111
Q ss_pred ----EecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCC--Cce-----EEecCCCCceEEEEecCCCCceEEEEEEe
Q 000268 281 ----CRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG--LPI-----SVLRGHTAAVTAIAFSPRPGSVYQLLSSS 349 (1757)
Q Consensus 281 ----L~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg--~~l-----~~l~gH~~~VtsLafSPdg~~~~~LaSgs 349 (1757)
+.||...|.++.|+|.+..|++++.|.++.+|...+. --+ ..+.|..+..++.-|+|++. .+++-+
T Consensus 259 ~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~---~ii~~g 335 (764)
T KOG1063|consen 259 FEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN---VIIAHG 335 (764)
T ss_pred hhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCC---EEEEec
Confidence 2399999999999999999999999999999987543 211 22234556789999999986 899999
Q ss_pred CCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCC
Q 000268 350 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDS 429 (1757)
Q Consensus 350 ~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s 429 (1757)
.-|..++|-..... .+.......+|...|..++|.|.|.+|++.+.|.+-|||-.-. .
T Consensus 336 ~~Gg~hlWkt~d~~-----------------~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg-----~ 393 (764)
T KOG1063|consen 336 RTGGFHLWKTKDKT-----------------FWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWG-----R 393 (764)
T ss_pred ccCcEEEEeccCcc-----------------ceeeccccccccccceeeeecCCCCEEEEeccccceeeecccc-----c
Confidence 99999999832211 0111223457889999999999999999999999999997641 1
Q ss_pred CCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCC-------
Q 000268 430 DQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR------- 502 (1757)
Q Consensus 430 ~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k------- 502 (1757)
.+....+..-+-|...++|++|-+.. -.+++|.....+++|+....-
T Consensus 394 q~~wHEiaRPQiHGyDl~c~~~vn~~--------------------------~~FVSgAdEKVlRvF~aPk~fv~~l~~i 447 (764)
T KOG1063|consen 394 QQEWHEIARPQIHGYDLTCLSFVNED--------------------------LQFVSGADEKVLRVFEAPKSFVKSLMAI 447 (764)
T ss_pred ccceeeecccccccccceeeehccCC--------------------------ceeeecccceeeeeecCcHHHHHHHHHH
Confidence 22356677777888899999988631 378888888888888765210
Q ss_pred ---CC------------ccccccccccc-----------------ccCCCCCCCCCC--------CCCCCceeecCCCCC
Q 000268 503 ---SH------------PKAARWTQAYH-----------------LKVPPPPMPPQP--------PRGGPRQRILPTPRG 542 (1757)
Q Consensus 503 ---~~------------~~~~~w~~~~~-----------------l~~~~~~~~~~~--------~~~~~~~~l~~h~~~ 542 (1757)
+. ...+.-...+. +...+..+...+ ........+.+|...
T Consensus 448 ~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyE 527 (764)
T KOG1063|consen 448 CGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYE 527 (764)
T ss_pred hCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCcee
Confidence 00 00000000000 000000000000 112345667899999
Q ss_pred eeEEEEcCCCCEEEEEecCC-----eEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce
Q 000268 543 VNMIVWSLDNRFVLAAIMDC-----RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIP 617 (1757)
Q Consensus 543 VtsVafSPDG~~LaSGs~DG-----~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~ 617 (1757)
|.+++.+|+|++||+++... .|++|+..+...++.+.+|+-.|+.|+||| ++++|++++.|.++.+|....+..
T Consensus 528 v~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~ 606 (764)
T KOG1063|consen 528 VYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIK 606 (764)
T ss_pred EEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeeeeecccc
Confidence 99999999999999988543 599999999999999999999999999999 788999999999999998865422
Q ss_pred ----EEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 000268 618 ----IRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 657 (1757)
Q Consensus 618 ----l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~tG 657 (1757)
......|.--|.++.|+||+.++|+++.|.+|.||....+
T Consensus 607 ~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 607 DEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred hhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 2334566667889999999999999999999999999877
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.2e-24 Score=252.72 Aligned_cols=331 Identities=18% Similarity=0.265 Sum_probs=263.0
Q ss_pred EEEEEECCCCCEEEEEcCCceEEEEecCCCeEE---EEEecCCCCeEEEEEcCC-----------CCEEEEEeCCceEEE
Q 000268 246 VYCAIFDRSGRYVITGSDDRLVKIWSMETAYCL---ASCRGHEGDITDLAVSSN-----------NALVASASNDCIIRV 311 (1757)
Q Consensus 246 V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l---~tL~gH~~~VtsLafSPD-----------g~lLASgS~DGtIrV 311 (1757)
..++.|++....|.+.-.|..|+|||+.+-..+ ..+-.|...|+++.--|. ...+++++.|++|++
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 356779999999999999999999999764333 233459999999876652 125889999999999
Q ss_pred EECCCCCceEEe-------------------------------------cCCCCceEEEEecCCCCceEEEEEEeCCCcE
Q 000268 312 WRLPDGLPISVL-------------------------------------RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354 (1757)
Q Consensus 312 WDl~tg~~l~~l-------------------------------------~gH~~~VtsLafSPdg~~~~~LaSgs~DGtI 354 (1757)
|++..+..-.++ -+....|.+++.+|+++ +|++|..-|+|
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq---hLAsGDr~Gnl 483 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ---HLASGDRGGNL 483 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc---eecccCccCce
Confidence 999753111110 01234689999999998 99999999999
Q ss_pred EEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECC---CCCEEEEeeCCceEEEecCCCCCCCCCCC
Q 000268 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA---NGTVFVTGSSDTLARVWNACKPNTDDSDQ 431 (1757)
Q Consensus 355 rIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSp---dG~~LasGs~DG~IrVWDl~t~~~~~s~~ 431 (1757)
+||++........+ ..|...|.|+.|+. ..++||+++.|..|+|||+..
T Consensus 484 rVy~Lq~l~~~~~~--------------------eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r-------- 535 (1080)
T KOG1408|consen 484 RVYDLQELEYTCFM--------------------EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR-------- 535 (1080)
T ss_pred EEEEehhhhhhhhe--------------------ecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc--------
Confidence 99999766544333 45889999999986 357899999999999999953
Q ss_pred CCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCccccccc
Q 000268 432 PNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 511 (1757)
Q Consensus 432 ~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~ 511 (1757)
....++++.+|...|+++.|..++. +-.+++++.|..|.+--... ...+
T Consensus 536 ny~l~qtld~HSssITsvKFa~~gl------------------------n~~MiscGADksimFr~~qk-~~~g------ 584 (1080)
T KOG1408|consen 536 NYDLVQTLDGHSSSITSVKFACNGL------------------------NRKMISCGADKSIMFRVNQK-ASSG------ 584 (1080)
T ss_pred ccchhhhhcccccceeEEEEeecCC------------------------ceEEEeccCchhhheehhcc-ccCc------
Confidence 3557888999999999999998762 24788999998876532211 0000
Q ss_pred ccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeC---CCCCeEEE
Q 000268 512 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTG---HTESTYVL 588 (1757)
Q Consensus 512 ~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~g---H~~~VtsL 588 (1757)
...+..........+..++..|..+++++++.|..|+||++.+|+..+.|+| |.+....+
T Consensus 585 -----------------~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv 647 (1080)
T KOG1408|consen 585 -----------------RLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKV 647 (1080)
T ss_pred -----------------eeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEE
Confidence 0001111112334578899999999999999999999999999999999975 56677888
Q ss_pred EEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 000268 589 DVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 656 (1757)
Q Consensus 589 afSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~t 656 (1757)
...| .+.+||+.+.|.++.++|..+|+++..+.+|...|+.+.|++|-++|++.+.||.|+||.+..
T Consensus 648 ~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 648 ILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 8999 788999999999999999999999999999999999999999999999999999999999854
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.3e-24 Score=269.42 Aligned_cols=313 Identities=21% Similarity=0.300 Sum_probs=245.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEe--CCceEEEEECCC------------CCceEEecCCCCceEEEEecCCCCceEEEEEEe
Q 000268 284 HEGDITDLAVSSNNALVASAS--NDCIIRVWRLPD------------GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS 349 (1757)
Q Consensus 284 H~~~VtsLafSPDg~lLASgS--~DGtIrVWDl~t------------g~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs 349 (1757)
+...|.+|+.+|||..+|||+ .||.++||+... .+.+.....|.+.|+|+.|+|||. +||+|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~---~lAsGS 88 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS---YLASGS 88 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC---eEeecc
Confidence 345699999999999999999 899999998642 245567778999999999999998 999999
Q ss_pred CCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCC
Q 000268 350 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDS 429 (1757)
Q Consensus 350 ~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s 429 (1757)
.|+.|.||..... ...... ...........+.....+.+|...|..++|+|++.+||+++.|++|.||+..+
T Consensus 89 DD~~v~iW~~~~~-~~~~~f-gs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~t------ 160 (942)
T KOG0973|consen 89 DDRLVMIWERAEI-GSGTVF-GSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKT------ 160 (942)
T ss_pred CcceEEEeeeccc-CCcccc-cccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccc------
Confidence 9999999998741 111111 00001111223334455678999999999999999999999999999999976
Q ss_pred CCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCccccc
Q 000268 430 DQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAAR 509 (1757)
Q Consensus 430 ~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~ 509 (1757)
...+..+.+|.+.|..+.|.|-| .+|++-+.|++|+||++.+
T Consensus 161 ---F~~~~vl~~H~s~VKGvs~DP~G--------------------------ky~ASqsdDrtikvwrt~d--------- 202 (942)
T KOG0973|consen 161 ---FELLKVLRGHQSLVKGVSWDPIG--------------------------KYFASQSDDRTLKVWRTSD--------- 202 (942)
T ss_pred ---ceeeeeeecccccccceEECCcc--------------------------CeeeeecCCceEEEEEccc---------
Confidence 45788999999999999999987 7999999999999998654
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEe----cCCeEEEEECCCCceEEEEeCCCCCe
Q 000268 510 WTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI----MDCRICVWNAADGSLVHSLTGHTEST 585 (1757)
Q Consensus 510 w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs----~DG~I~IWDl~tgkll~~L~gH~~~V 585 (1757)
|.....+.-+ ..-......+..+.|||||.+|+++. .-.++.|.+-.+.+.-..|-||.+++
T Consensus 203 w~i~k~It~p--------------f~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~ 268 (942)
T KOG0973|consen 203 WGIEKSITKP--------------FEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPV 268 (942)
T ss_pred ceeeEeeccc--------------hhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCce
Confidence 2111111100 00011233477889999999999853 23468899988888889999999999
Q ss_pred EEEEEecC------C------C----cEEEEEeCCCcEEEEeCCCCceEEEEe-ecCcceEEEEEcCCCCEEEEEeCCCe
Q 000268 586 YVLDVHPF------N------P----RIAMSAGYDGKTIVWDIWEGIPIRIYE-ISRFRLVDGKFSPDGASIILSDDVGQ 648 (1757)
Q Consensus 586 tsLafSPd------d------~----~lLaSgs~DG~IrIWDl~tg~~l~~l~-~~~~~VtslafSPDGk~LAsgs~DG~ 648 (1757)
.++.|+|. . . .++|+|+.|++|.||.....+++..+. .....|.+++|+|||..|++++.||+
T Consensus 269 evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGt 348 (942)
T KOG0973|consen 269 EVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGT 348 (942)
T ss_pred EEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCe
Confidence 99999982 1 1 178999999999999998878776654 23558999999999999999999999
Q ss_pred EEEEECCCCcc
Q 000268 649 LYILNTGQGES 659 (1757)
Q Consensus 649 I~IWdl~tGe~ 659 (1757)
|.++.+...+.
T Consensus 349 V~~i~Fee~El 359 (942)
T KOG0973|consen 349 VALIHFEEKEL 359 (942)
T ss_pred EEEEEcchHHh
Confidence 99999987544
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-24 Score=259.51 Aligned_cols=340 Identities=19% Similarity=0.304 Sum_probs=265.1
Q ss_pred CCCCEE---EEEEC-CCCCEEEEEcCCceEEEEecCCCe------EEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEE
Q 000268 242 HRNAVY---CAIFD-RSGRYVITGSDDRLVKIWSMETAY------CLASCRGHEGDITDLAVSSNNALVASASNDCIIRV 311 (1757)
Q Consensus 242 H~~~V~---~VaFS-PDG~~LATGS~DGtIkIWDl~tg~------~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrV 311 (1757)
|...|. ++..+ |.+++|+|||.||.|++|++..-. .+.++..|..+|.+++...+++.|+++|.|-+|++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 444444 44444 456789999999999999985422 46778899999999999999999999999999999
Q ss_pred EECCCC--CceEEecCCCCceEEEEe-cCCCCceEEEEEEeCCCcEEEEecCCCCc--cceeecCCCCccccCCCCCCCC
Q 000268 312 WRLPDG--LPISVLRGHTAAVTAIAF-SPRPGSVYQLLSSSDDGTCRIWDARYSQF--SPRIYIPRPSDAVAGRNMAPSS 386 (1757)
Q Consensus 312 WDl~tg--~~l~~l~gH~~~VtsLaf-SPdg~~~~~LaSgs~DGtIrIWDl~tg~~--~~~i~l~~~~~~~~g~~~~~~~ 386 (1757)
|+...+ -++.++..|...|.|+++ .++.. ++|+||.|+.|.+||+.++.. +..+.. .....
T Consensus 100 W~~~~~~~~c~stir~H~DYVkcla~~ak~~~---lvaSgGLD~~IflWDin~~~~~l~~s~n~-----------~t~~s 165 (735)
T KOG0308|consen 100 WNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNE---LVASGGLDRKIFLWDINTGTATLVASFNN-----------VTVNS 165 (735)
T ss_pred eecccCcchhHhhhhcccchheeeeecccCce---eEEecCCCccEEEEEccCcchhhhhhccc-----------ccccc
Confidence 999877 678889999999999999 55554 899999999999999998832 222211 11111
Q ss_pred CCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCC
Q 000268 387 SAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSS 466 (1757)
Q Consensus 387 ~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~ 466 (1757)
...++...|++++.++.|..|++|+..+.|++||.++ .+.+..+.||+..|.++..+.+|
T Consensus 166 l~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt---------~~kimkLrGHTdNVr~ll~~dDG----------- 225 (735)
T KOG0308|consen 166 LGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT---------CKKIMKLRGHTDNVRVLLVNDDG----------- 225 (735)
T ss_pred CCCCCccceeeeecCCcceEEEecCcccceEEecccc---------ccceeeeeccccceEEEEEcCCC-----------
Confidence 2226788899999999999999999999999999977 45677888999999999999987
Q ss_pred CCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEE
Q 000268 467 KEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMI 546 (1757)
Q Consensus 467 ~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsV 546 (1757)
..+++++.||+|++||+...+ ++..+..|...|.++
T Consensus 226 ---------------t~~ls~sSDgtIrlWdLgqQr-----------------------------Cl~T~~vH~e~VWaL 261 (735)
T KOG0308|consen 226 ---------------TRLLSASSDGTIRLWDLGQQR-----------------------------CLATYIVHKEGVWAL 261 (735)
T ss_pred ---------------CeEeecCCCceEEeeeccccc-----------------------------eeeeEEeccCceEEE
Confidence 799999999999999998643 344566788889999
Q ss_pred EEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-------CceEE
Q 000268 547 VWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE-------GIPIR 619 (1757)
Q Consensus 547 afSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~t-------g~~l~ 619 (1757)
..+|+-.++++|+.||.|+.=|+.+......+-....+|..+..+..+..+ -+++.|+.|+-|...- +.+..
T Consensus 262 ~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~-WvtTtds~I~rW~~~~~~~l~~s~~~~~ 340 (735)
T KOG0308|consen 262 QSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSV-WVTTTDSSIKRWKLEPDIALSVSGDLDF 340 (735)
T ss_pred eeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCc-eeeeccccceecCCccccccccCCCCCc
Confidence 999999999999999999999998854433343355667777776544443 4567899999996532 11110
Q ss_pred ------------------EEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc
Q 000268 620 ------------------IYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 661 (1757)
Q Consensus 620 ------------------~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~tGe~~~ 661 (1757)
++. +..+|...++-.|.+++++-+..|.+.+||+-.+..+.
T Consensus 341 ~~T~~~~~~~~~~~tp~~vi~-Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~ 399 (735)
T KOG0308|consen 341 FSTDSNNHSCDLTNTPDSVIP-GGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVE 399 (735)
T ss_pred ccccCCCccccccCCCceecc-CchhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehh
Confidence 111 22245555667788999999999999999997765544
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-23 Score=254.74 Aligned_cols=277 Identities=19% Similarity=0.337 Sum_probs=236.8
Q ss_pred EEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecC-C
Q 000268 248 CAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRG-H 326 (1757)
Q Consensus 248 ~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~g-H 326 (1757)
-+.|+ ....||+|.. ..|++|+..++........+...|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |
T Consensus 182 lldWs-s~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h 259 (484)
T KOG0305|consen 182 LLDWS-SANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSH 259 (484)
T ss_pred Hhhcc-cCCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCc
Confidence 34577 4457777653 5799999999987777666689999999999999999999999999999999999999998 9
Q ss_pred CCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCE
Q 000268 327 TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTV 406 (1757)
Q Consensus 327 ~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~ 406 (1757)
...|-+++|... .+.+|+.||.|.++|++..+.... ...+|...|..+.|++|+.+
T Consensus 260 ~~rvg~laW~~~-----~lssGsr~~~I~~~dvR~~~~~~~-------------------~~~~H~qeVCgLkws~d~~~ 315 (484)
T KOG0305|consen 260 ASRVGSLAWNSS-----VLSSGSRDGKILNHDVRISQHVVS-------------------TLQGHRQEVCGLKWSPDGNQ 315 (484)
T ss_pred CceeEEEeccCc-----eEEEecCCCcEEEEEEecchhhhh-------------------hhhcccceeeeeEECCCCCe
Confidence 999999999943 799999999999999987654332 13568999999999999999
Q ss_pred EEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEE
Q 000268 407 FVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVT 486 (1757)
Q Consensus 407 LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvS 486 (1757)
+|+|+.|+.+.|||... ......+..|...|.+++|+|-. ...||+
T Consensus 316 lASGgnDN~~~Iwd~~~---------~~p~~~~~~H~aAVKA~awcP~q-------------------------~~lLAs 361 (484)
T KOG0305|consen 316 LASGGNDNVVFIWDGLS---------PEPKFTFTEHTAAVKALAWCPWQ-------------------------SGLLAT 361 (484)
T ss_pred eccCCCccceEeccCCC---------ccccEEEeccceeeeEeeeCCCc-------------------------cCceEE
Confidence 99999999999999943 34567889999999999999864 468888
Q ss_pred Ec--CCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEE--EecCC
Q 000268 487 CS--RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA--AIMDC 562 (1757)
Q Consensus 487 gS--~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaS--Gs~DG 562 (1757)
|+ .|++|++||..++.. .........|..|.|++..+-|++ |..++
T Consensus 362 GGGs~D~~i~fwn~~~g~~------------------------------i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n 411 (484)
T KOG0305|consen 362 GGGSADRCIKFWNTNTGAR------------------------------IDSVDTGSQVCSLIWSKKYKELLSTHGYSEN 411 (484)
T ss_pred cCCCcccEEEEEEcCCCcE------------------------------ecccccCCceeeEEEcCCCCEEEEecCCCCC
Confidence 64 599999999986441 223345678999999999977776 55678
Q ss_pred eEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 000268 563 RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG 615 (1757)
Q Consensus 563 ~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg 615 (1757)
.|.||+..+.+++..+.+|...|..++++| ++..+++|+.|.++++|++...
T Consensus 412 ~i~lw~~ps~~~~~~l~gH~~RVl~la~SP-dg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 412 QITLWKYPSMKLVAELLGHTSRVLYLALSP-DGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred cEEEEeccccceeeeecCCcceeEEEEECC-CCCEEEEecccCcEEeccccCC
Confidence 899999999999999999999999999999 6788899999999999999765
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=265.28 Aligned_cols=281 Identities=25% Similarity=0.418 Sum_probs=246.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEE-ecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCC
Q 000268 284 HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISV-LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 362 (1757)
Q Consensus 284 H~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~-l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg 362 (1757)
+...|.+..|. +.++++++.+++|++|+..++..+.. +.||.+.|++++|..-+. +|++|+.|.++++||+.+|
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~---~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGD---KLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCC---EEEEEecCCcEEeEecCCC
Confidence 56778888888 55899999999999999999999888 999999999999987444 8999999999999999999
Q ss_pred CccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCC
Q 000268 363 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH 442 (1757)
Q Consensus 363 ~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH 442 (1757)
.+...+. +|...|.++.. .+..+++|+.|.+|+||++.+ +..+..+.+|
T Consensus 282 ~C~~~l~--------------------gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n---------~~~l~l~~~h 330 (537)
T KOG0274|consen 282 ECTHSLQ--------------------GHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTN---------GACLNLLRGH 330 (537)
T ss_pred cEEEEec--------------------CCCceEEEEEc--cCceEeeccCCceEEEEeccC---------cceEEEeccc
Confidence 9887763 47777888776 445788899999999999965 5577888889
Q ss_pred CCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCC
Q 000268 443 ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPP 522 (1757)
Q Consensus 443 ~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~ 522 (1757)
...|.++.... +.+++|+.||+|++||+.+
T Consensus 331 ~~~V~~v~~~~----------------------------~~lvsgs~d~~v~VW~~~~---------------------- 360 (537)
T KOG0274|consen 331 TGPVNCVQLDE----------------------------PLLVSGSYDGTVKVWDPRT---------------------- 360 (537)
T ss_pred cccEEEEEecC----------------------------CEEEEEecCceEEEEEhhh----------------------
Confidence 99999999872 5999999999999999985
Q ss_pred CCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCC-ceEEEEeCCCCCeEEEEEecCCCcEEEEE
Q 000268 523 MPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG-SLVHSLTGHTESTYVLDVHPFNPRIAMSA 601 (1757)
Q Consensus 523 ~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tg-kll~~L~gH~~~VtsLafSPdd~~lLaSg 601 (1757)
+..+..+.+|...|.++.+... ..+++|+.|++|++||+.++ +++.++.+|..-|..+.+ ...+|+++
T Consensus 361 -------~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~---~~~~Lvs~ 429 (537)
T KOG0274|consen 361 -------GKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL---RDNFLVSS 429 (537)
T ss_pred -------ceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc---ccceeEec
Confidence 3456677889999999988766 89999999999999999999 999999999999988877 45788999
Q ss_pred eCCCcEEEEeCCCCceEEEEee-cCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccccc
Q 000268 602 GYDGKTIVWDIWEGIPIRIYEI-SRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDA 663 (1757)
Q Consensus 602 s~DG~IrIWDl~tg~~l~~l~~-~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~tGe~~~~~ 663 (1757)
+.|++|++||+.++.+++++.+ +.+.|+.+++. ...+++++.+|.+.+||+.+|+.....
T Consensus 430 ~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 430 SADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred cccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 9999999999999999999998 56888888887 567888999999999999999876644
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=255.52 Aligned_cols=264 Identities=20% Similarity=0.278 Sum_probs=203.2
Q ss_pred CCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEE-------------EEEecCCCCeEEEEEcC-CCCEEEEEeCCceE
Q 000268 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCL-------------ASCRGHEGDITDLAVSS-NNALVASASNDCII 309 (1757)
Q Consensus 244 ~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l-------------~tL~gH~~~VtsLafSP-Dg~lLASgS~DGtI 309 (1757)
..|....+++++..+++++.+..+..|+...|..+ ..+.+|.+.|++++|+| ++.+||+|+.|++|
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 45666677778777777777777778876544332 13678999999999999 88899999999999
Q ss_pred EEEECCCC-------CceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCC
Q 000268 310 RVWRLPDG-------LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 382 (1757)
Q Consensus 310 rVWDl~tg-------~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~ 382 (1757)
+|||+.++ .++..+.+|...|.+++|+|++. .+|++++.|++|+|||+.++.....+
T Consensus 101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~--~iLaSgs~DgtVrIWDl~tg~~~~~l-------------- 164 (493)
T PTZ00421 101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM--NVLASAGADMVVNVWDVERGKAVEVI-------------- 164 (493)
T ss_pred EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC--CEEEEEeCCCEEEEEECCCCeEEEEE--------------
Confidence 99999765 35778899999999999999863 28999999999999999987654433
Q ss_pred CCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCc-eEEEEccCccccccc
Q 000268 383 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDV-NYVQFSGCAVASRFS 461 (1757)
Q Consensus 383 ~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V-~sLafSpdg~~s~~~ 461 (1757)
..|...|.+++|+|+|.+|++|+.|+.|+|||++++ ..+..+.+|.+.+ ..+.|.+++
T Consensus 165 ------~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg---------~~v~tl~~H~~~~~~~~~w~~~~------ 223 (493)
T PTZ00421 165 ------KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG---------TIVSSVEAHASAKSQRCLWAKRK------ 223 (493)
T ss_pred ------cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCC---------cEEEEEecCCCCcceEEEEcCCC------
Confidence 246678999999999999999999999999999763 3466677887653 456677654
Q ss_pred cccCCCCCCCCcccccccCCCcEEEEc----CCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceee-
Q 000268 462 LADSSKEDSTPKFKNSWFCHDNIVTCS----RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI- 536 (1757)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~LvSgS----~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l- 536 (1757)
..+++++ .|+.|++||+++... +....
T Consensus 224 --------------------~~ivt~G~s~s~Dr~VklWDlr~~~~----------------------------p~~~~~ 255 (493)
T PTZ00421 224 --------------------DLIITLGCSKSQQRQIMLWDTRKMAS----------------------------PYSTVD 255 (493)
T ss_pred --------------------CeEEEEecCCCCCCeEEEEeCCCCCC----------------------------ceeEec
Confidence 4555543 589999999985220 11111
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEe-cCCeEEEEECCCCceEEEEeC-CCCCeEEEEEec
Q 000268 537 LPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAADGSLVHSLTG-HTESTYVLDVHP 592 (1757)
Q Consensus 537 ~~h~~~VtsVafSPDG~~LaSGs-~DG~I~IWDl~tgkll~~L~g-H~~~VtsLafSP 592 (1757)
......+....|++++.+|++|+ .|+.|++||+.+++++..+.. +...+..++|.|
T Consensus 256 ~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 256 LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence 12234566778999999999887 599999999999988776654 445677888888
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-24 Score=238.00 Aligned_cols=285 Identities=19% Similarity=0.300 Sum_probs=243.5
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEec--------CCCCceEEEEecCCCCceEEEEEEeCCCcE
Q 000268 283 GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR--------GHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354 (1757)
Q Consensus 283 gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~--------gH~~~VtsLafSPdg~~~~~LaSgs~DGtI 354 (1757)
+....+.|..|+|||++|++|+.||.|.||+..+|+....++ -+..+|.|+.|+.|.. .|++|+.||.|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE---MlAsGsqDGkI 287 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE---MLASGSQDGKI 287 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH---HhhccCcCCcE
Confidence 456678899999999999999999999999999997655443 3678999999999987 89999999999
Q ss_pred EEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCc
Q 000268 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNH 434 (1757)
Q Consensus 355 rIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~ 434 (1757)
++|.+.+|.|+.++. ..|...|+|+.|+.|+..+++++.|.+++|.-+.+ ++
T Consensus 288 KvWri~tG~ClRrFd-------------------rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS---------GK 339 (508)
T KOG0275|consen 288 KVWRIETGQCLRRFD-------------------RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS---------GK 339 (508)
T ss_pred EEEEEecchHHHHhh-------------------hhhccCeeEEEEccCcchhhcccccceEEEecccc---------ch
Confidence 999999999998873 35788899999999999999999999999998865 56
Q ss_pred ceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccc
Q 000268 435 EIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 514 (1757)
Q Consensus 435 ~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~ 514 (1757)
.+..+.||...|+...|.++| ..+++++.||+|++|+..+..+...+
T Consensus 340 ~LKEfrGHsSyvn~a~ft~dG--------------------------~~iisaSsDgtvkvW~~KtteC~~Tf------- 386 (508)
T KOG0275|consen 340 CLKEFRGHSSYVNEATFTDDG--------------------------HHIISASSDGTVKVWHGKTTECLSTF------- 386 (508)
T ss_pred hHHHhcCccccccceEEcCCC--------------------------CeEEEecCCccEEEecCcchhhhhhc-------
Confidence 788899999999999999997 79999999999999999875533221
Q ss_pred cccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcC-CCCEEEEEecCCeEEEEECCCCceEEEEeC---CCCCeEEEEE
Q 000268 515 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL-DNRFVLAAIMDCRICVWNAADGSLVHSLTG---HTESTYVLDV 590 (1757)
Q Consensus 515 ~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSP-DG~~LaSGs~DG~I~IWDl~tgkll~~L~g---H~~~VtsLaf 590 (1757)
...+....|+.+..-| +-..++++...++|+|.++ .|+.++.+.. ..+...+.+.
T Consensus 387 --------------------k~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~l 445 (508)
T KOG0275|consen 387 --------------------KPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAIL 445 (508)
T ss_pred --------------------cCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEe
Confidence 1122445677776655 4457888888899999998 5888888853 2345667778
Q ss_pred ecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000268 591 HPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 653 (1757)
Q Consensus 591 SPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWd 653 (1757)
|| .+.++.+.+.|+.++.|.+.+|++-+++..|...|..++-+|..+.||+-+.||.+++|.
T Consensus 446 Sp-kGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 446 SP-KGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cC-CCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 99 778888999999999999999999999999999999999999999999999999999995
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=243.33 Aligned_cols=298 Identities=19% Similarity=0.306 Sum_probs=241.0
Q ss_pred EEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEE----EE-------------E-ecCCCCeEEEEEcCCC
Q 000268 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCL----AS-------------C-RGHEGDITDLAVSSNN 297 (1757)
Q Consensus 236 l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l----~t-------------L-~gH~~~VtsLafSPDg 297 (1757)
++.+..|.-+|.||+++|+++++++++.+|+|.=|++.+|+.. .+ - ++|...|.++++++||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 5678889999999999999999999999999999999888633 11 1 2788999999999999
Q ss_pred CEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccc
Q 000268 298 ALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAV 377 (1757)
Q Consensus 298 ~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~ 377 (1757)
++||+|+.|..|.||+..++..+..+.+|.+.|.+++|--... .|++++.|++|++|++.....+.++
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~---~lys~s~Drsvkvw~~~~~s~vetl--------- 282 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTS---ELYSASADRSVKVWSIDQLSYVETL--------- 282 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCcc---ceeeeecCCceEEEehhHhHHHHHH---------
Confidence 9999999999999999999999999999999999999987655 8999999999999999877655554
Q ss_pred cCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccc
Q 000268 378 AGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVA 457 (1757)
Q Consensus 378 ~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~ 457 (1757)
.+|...|..|....-++.+.+|+.|.++++|++.. .....+.+|.+.+.|++|-.+
T Consensus 283 -----------yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e----------esqlifrg~~~sidcv~~In~--- 338 (479)
T KOG0299|consen 283 -----------YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE----------ESQLIFRGGEGSIDCVAFIND--- 338 (479)
T ss_pred -----------hCCccceeeechhcccceEEeccccceeEEEeccc----------cceeeeeCCCCCeeeEEEecc---
Confidence 36888899999988899899999999999999932 223457888999999999865
Q ss_pred cccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeec
Q 000268 458 SRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL 537 (1757)
Q Consensus 458 s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~ 537 (1757)
..|++|+.+|.|.+|++...+...... ....+ .+.....
T Consensus 339 ------------------------~HfvsGSdnG~IaLWs~~KKkplf~~~-----~AHgv------------~~~~~~~ 377 (479)
T KOG0299|consen 339 ------------------------EHFVSGSDNGSIALWSLLKKKPLFTSR-----LAHGV------------IPELDPV 377 (479)
T ss_pred ------------------------cceeeccCCceEEEeeecccCceeEee-----ccccc------------cCCcccc
Confidence 599999999999999998655321110 00000 0000112
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCC----ceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000268 538 PTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG----SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1757)
Q Consensus 538 ~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tg----kll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWD 611 (1757)
.+...|++++..|...++++|+.+|.|++|-+..| .++..+. -.+-|++|+|++++.++++..|....+-=|-
T Consensus 378 ~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 378 NGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred ccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccceee
Confidence 33368999999999999999999999999999887 4455555 5678999999996666777666666554443
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=229.21 Aligned_cols=282 Identities=22% Similarity=0.368 Sum_probs=230.6
Q ss_pred EEEEECCC-CCEEEEE-------cCCceEEEEecCCCeEEEEEe--cCCCCeEEEEEcCCC-CEEEEEeCCceEEEEECC
Q 000268 247 YCAIFDRS-GRYVITG-------SDDRLVKIWSMETAYCLASCR--GHEGDITDLAVSSNN-ALVASASNDCIIRVWRLP 315 (1757)
Q Consensus 247 ~~VaFSPD-G~~LATG-------S~DGtIkIWDl~tg~~l~tL~--gH~~~VtsLafSPDg-~lLASgS~DGtIrVWDl~ 315 (1757)
+++.|||- ..+||.+ ...|.+.|.++..+.-+..+. .-...+..++|+++. ..+++++.||+++|||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 67889992 2233332 236899999997555555544 246789999999864 478888999999999964
Q ss_pred C-CCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcc
Q 000268 316 D-GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1757)
Q Consensus 316 t-g~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~ 394 (1757)
- ..++..++.|...|.++.|.+..+ ..+++++.||+|++|+....+-+.++ .+|...
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r--~~~ltsSWD~TiKLW~~~r~~Sv~Tf--------------------~gh~~~ 149 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRR--RIFLTSSWDGTIKLWDPNRPNSVQTF--------------------NGHNSC 149 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccc--eeEEeeccCCceEeecCCCCcceEee--------------------cCCccE
Confidence 3 368899999999999999999765 47888899999999998877655553 358888
Q ss_pred eEEEEECC-CCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCc
Q 000268 395 IFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1757)
Q Consensus 395 V~slafSp-dG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~ 473 (1757)
|...+|+| .+++|++++.|+++++||++.+ ++.+. +..|...|.++.|+.-.
T Consensus 150 Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~--------gk~~~-i~ah~~Eil~cdw~ky~------------------ 202 (311)
T KOG0277|consen 150 IYQAAFSPHIPNLFASASGDGTLRLWDVRSP--------GKFMS-IEAHNSEILCCDWSKYN------------------ 202 (311)
T ss_pred EEEEecCCCCCCeEEEccCCceEEEEEecCC--------CceeE-EEeccceeEeecccccC------------------
Confidence 99999999 6789999999999999999742 33443 88999999999998532
Q ss_pred ccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCC-
Q 000268 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN- 552 (1757)
Q Consensus 474 ~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG- 552 (1757)
+..|+||+.|+.|++||++.-+ .++..+.+|.-.|+.|.|||..
T Consensus 203 -------~~vl~Tg~vd~~vr~wDir~~r----------------------------~pl~eL~gh~~AVRkvk~Sph~~ 247 (311)
T KOG0277|consen 203 -------HNVLATGGVDNLVRGWDIRNLR----------------------------TPLFELNGHGLAVRKVKFSPHHA 247 (311)
T ss_pred -------CcEEEecCCCceEEEEehhhcc----------------------------ccceeecCCceEEEEEecCcchh
Confidence 5789999999999999999622 3466778899999999999965
Q ss_pred CEEEEEecCCeEEEEECCCC-ceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000268 553 RFVLAAIMDCRICVWNAADG-SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1757)
Q Consensus 553 ~~LaSGs~DG~I~IWDl~tg-kll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl 612 (1757)
..|++++.|-+++|||...+ .++.+...|+.-|..+.|++..+.++|+++.|+.++||+.
T Consensus 248 ~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 248 SLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 47889999999999999754 4566777899999999999999999999999999999984
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-23 Score=249.23 Aligned_cols=282 Identities=23% Similarity=0.383 Sum_probs=243.0
Q ss_pred ceeEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEE--EEecCCCCeEE-EEEcC-CCCEEEEEeCCce
Q 000268 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLA--SCRGHEGDITD-LAVSS-NNALVASASNDCI 308 (1757)
Q Consensus 233 ~k~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~--tL~gH~~~Vts-LafSP-Dg~lLASgS~DGt 308 (1757)
+++-+.|.||...|..|++.+.. .++++|.||++++|+-..++.+. .+.+|.+.|.+ +++.+ ++-.|++|+.|.+
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred ceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 56778999999999999987655 89999999999999986665544 46788888887 88875 5557999999999
Q ss_pred EEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCC
Q 000268 309 IRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 388 (1757)
Q Consensus 309 IrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~ 388 (1757)
|.+|.+.+..++.+|.+|...|.++....++ .+++|+.|.++++|-..... ...
T Consensus 83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~----~~iSgSWD~TakvW~~~~l~----------------------~~l 136 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDG----TLISGSWDSTAKVWRIGELV----------------------YSL 136 (745)
T ss_pred EEEEecCCCCchhhhhccccceeeeecCCcC----ceEecccccceEEecchhhh----------------------ccc
Confidence 9999999999999999999999999987776 59999999999999764321 124
Q ss_pred CCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCC
Q 000268 389 GPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 468 (1757)
Q Consensus 389 ~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~ 468 (1757)
.+|...|+++++-|++ .+++|+.|.+|++|.- +..+.++.+|.+.|+.+++.+++
T Consensus 137 ~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~-----------~~~l~tf~gHtD~VRgL~vl~~~------------- 191 (745)
T KOG0301|consen 137 QGHTASVWAVASLPEN-TYVTGSADKTIKLWKG-----------GTLLKTFSGHTDCVRGLAVLDDS------------- 191 (745)
T ss_pred CCcchheeeeeecCCC-cEEeccCcceeeeccC-----------CchhhhhccchhheeeeEEecCC-------------
Confidence 5799999999999988 7999999999999987 45788999999999999999864
Q ss_pred CCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEE
Q 000268 469 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 548 (1757)
Q Consensus 469 ~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVaf 548 (1757)
.|++|+.||.|++|++. +..+.+..+|..-|.++..
T Consensus 192 --------------~flScsNDg~Ir~w~~~------------------------------ge~l~~~~ghtn~vYsis~ 227 (745)
T KOG0301|consen 192 --------------HFLSCSNDGSIRLWDLD------------------------------GEVLLEMHGHTNFVYSISM 227 (745)
T ss_pred --------------CeEeecCCceEEEEecc------------------------------CceeeeeeccceEEEEEEe
Confidence 89999999999999985 4556778889999999999
Q ss_pred cCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 000268 549 SLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614 (1757)
Q Consensus 549 SPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~t 614 (1757)
..++..|++++.|++++||+.. .+.+.+.-..-.|+++.+-+ ++.+ ++|+.||.|+||....
T Consensus 228 ~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~-NgDI-vvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 228 ALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLL-NGDI-VVGGSDGRVRVFTVDK 289 (745)
T ss_pred cCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEee-CCCE-EEeccCceEEEEEecc
Confidence 9999999999999999999975 88888886666899999988 5555 4788999999998763
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-23 Score=228.28 Aligned_cols=282 Identities=18% Similarity=0.305 Sum_probs=228.0
Q ss_pred EEEEEcC--CCCEEEEE------eCCceEEEEECCCCCceEEec--CCCCceEEEEecCCCCceEEEEEEeCCCcEEEEe
Q 000268 289 TDLAVSS--NNALVASA------SNDCIIRVWRLPDGLPISVLR--GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358 (1757)
Q Consensus 289 tsLafSP--Dg~lLASg------S~DGtIrVWDl~tg~~l~~l~--gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWD 358 (1757)
.++.||| .+++.+++ ...|.+.|.++..++-+..+. .-...+..++|++... ..+++++.||++++||
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e--~~~~~a~GDGSLrl~d 89 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHE--NQVIAASGDGSLRLFD 89 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCc--ceEEEEecCceEEEec
Confidence 5778988 34333222 236899999997555554443 2457799999999865 3899999999999999
Q ss_pred cCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECC-CCCEEEEeeCCceEEEecCCCCCCCCCCCCCccee
Q 000268 359 ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEID 437 (1757)
Q Consensus 359 l~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSp-dG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~ 437 (1757)
+.... .+....+.|...|.++.|++ ++..+++++-|++|++|+... ...+.
T Consensus 90 ~~~~s-------------------~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r---------~~Sv~ 141 (311)
T KOG0277|consen 90 LTMPS-------------------KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR---------PNSVQ 141 (311)
T ss_pred cCCCC-------------------cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC---------CcceE
Confidence 54222 23444567899999999998 566788889999999999864 34677
Q ss_pred eecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCccccccccccccc
Q 000268 438 VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLK 517 (1757)
Q Consensus 438 ~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~ 517 (1757)
++.+|...|...+|+|.. ++.++++|.||++++||++..
T Consensus 142 Tf~gh~~~Iy~a~~sp~~-------------------------~nlfas~Sgd~~l~lwdvr~~---------------- 180 (311)
T KOG0277|consen 142 TFNGHNSCIYQAAFSPHI-------------------------PNLFASASGDGTLRLWDVRSP---------------- 180 (311)
T ss_pred eecCCccEEEEEecCCCC-------------------------CCeEEEccCCceEEEEEecCC----------------
Confidence 899999999999999975 479999999999999998841
Q ss_pred CCCCCCCCCCCCCCCceeecCCCCCeeEEEEcC-CCCEEEEEecCCeEEEEECCCC-ceEEEEeCCCCCeEEEEEecCCC
Q 000268 518 VPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL-DNRFVLAAIMDCRICVWNAADG-SLVHSLTGHTESTYVLDVHPFNP 595 (1757)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSP-DG~~LaSGs~DG~I~IWDl~tg-kll~~L~gH~~~VtsLafSPdd~ 595 (1757)
+....+..|...|.++.|+. +...|+||+.|+.|++||+++- .++..|.+|.-.|..|.|||...
T Consensus 181 -------------gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~ 247 (311)
T KOG0277|consen 181 -------------GKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHA 247 (311)
T ss_pred -------------CceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchh
Confidence 22233677888999999997 4567889999999999999874 57889999999999999999888
Q ss_pred cEEEEEeCCCcEEEEeCCCC-ceEEEEeecCcceEEEEEcC-CCCEEEEEeCCCeEEEEEC
Q 000268 596 RIAMSAGYDGKTIVWDIWEG-IPIRIYEISRFRLVDGKFSP-DGASIILSDDVGQLYILNT 654 (1757)
Q Consensus 596 ~lLaSgs~DG~IrIWDl~tg-~~l~~l~~~~~~VtslafSP-DGk~LAsgs~DG~I~IWdl 654 (1757)
.+|++++.|-+++|||...+ .++.++..|..-+..+.||+ ++.++|+++.|+.++||+.
T Consensus 248 ~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 248 SLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 99999999999999999844 56667777777788899998 6789999999999999984
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-24 Score=242.97 Aligned_cols=290 Identities=20% Similarity=0.323 Sum_probs=235.5
Q ss_pred EEEEecCCCCeEEEEEcCCC-CEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEE
Q 000268 278 LASCRGHEGDITDLAVSSNN-ALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356 (1757)
Q Consensus 278 l~tL~gH~~~VtsLafSPDg-~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrI 356 (1757)
+..|.||..+|.|++=+|.. ..+|+|+.||.|+|||+.+..++..+.+|.+.|..|++... .+++++.|.+|+.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~-----~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQT-----SFFTVGDDKTVKQ 133 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEeccc-----ceEEecCCcceee
Confidence 44567899999999999977 68999999999999999999999999999999999999882 6899999999999
Q ss_pred EecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcce
Q 000268 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 436 (1757)
Q Consensus 357 WDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i 436 (1757)
|-+... ...++. ....+..+.-+..+..+|++|. .|.|||... ..++
T Consensus 134 wk~~~~-p~~til---------------------g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R---------~~Pv 180 (433)
T KOG0268|consen 134 WKIDGP-PLHTIL---------------------GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQR---------DNPV 180 (433)
T ss_pred eeccCC-cceeee---------------------ccccccccccccccccccccCc--eeeeccccc---------CCcc
Confidence 987652 222221 2334556666667778888875 489999854 3456
Q ss_pred eeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccc
Q 000268 437 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHL 516 (1757)
Q Consensus 437 ~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l 516 (1757)
..+.--...|.++.|+|.- ...|++|+.|+.|.+||+++.....+.
T Consensus 181 ~smswG~Dti~svkfNpvE-------------------------TsILas~~sDrsIvLyD~R~~~Pl~KV--------- 226 (433)
T KOG0268|consen 181 SSMSWGADSISSVKFNPVE-------------------------TSILASCASDRSIVLYDLRQASPLKKV--------- 226 (433)
T ss_pred ceeecCCCceeEEecCCCc-------------------------chheeeeccCCceEEEecccCCcccee---------
Confidence 6677777889999999864 258899999999999999975422211
Q ss_pred cCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCC-ceEEEEeCCCCCeEEEEEecCCC
Q 000268 517 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG-SLVHSLTGHTESTYVLDVHPFNP 595 (1757)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tg-kll~~L~gH~~~VtsLafSPdd~ 595 (1757)
. ....-+.|+|+|.+-.+++|..|..++.||+... .++....+|.+.|.++.||| .|
T Consensus 227 --------------------i-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp-tG 284 (433)
T KOG0268|consen 227 --------------------I-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP-TG 284 (433)
T ss_pred --------------------e-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC-Cc
Confidence 1 1233578999998888999999999999999774 57888999999999999999 56
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEEeecC-cceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc
Q 000268 596 RIAMSAGYDGKTIVWDIWEGIPIRIYEISR-FRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 661 (1757)
Q Consensus 596 ~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~-~~VtslafSPDGk~LAsgs~DG~I~IWdl~tGe~~~ 661 (1757)
+-+++||.|.+|+||.+..+....++.... ..|.++.||.|.+||++|++|+.|++|.....+.+.
T Consensus 285 ~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 285 QEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred chhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcC
Confidence 677899999999999998887766654332 369999999999999999999999999987766554
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.3e-23 Score=237.30 Aligned_cols=284 Identities=21% Similarity=0.327 Sum_probs=245.1
Q ss_pred CCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEe
Q 000268 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL 323 (1757)
Q Consensus 244 ~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l 323 (1757)
..|.++...|....++||+.|..+.++|..+++.+.++.||...|+.+.|+++...+++++.|..|+||...........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 46888888888789999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred cCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCC
Q 000268 324 RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN 403 (1757)
Q Consensus 324 ~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpd 403 (1757)
..|..+|+.+..+|.+. ||++++.||+..+.|++++.++...... ...-.+++++|+||
T Consensus 300 ~~h~~~V~~ls~h~tge---YllsAs~d~~w~Fsd~~~g~~lt~vs~~------------------~s~v~~ts~~fHpD 358 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGE---YLLSASNDGTWAFSDISSGSQLTVVSDE------------------TSDVEYTSAAFHPD 358 (506)
T ss_pred ccccccceeeeeccCCc---EEEEecCCceEEEEEccCCcEEEEEeec------------------cccceeEEeeEcCC
Confidence 99999999999999998 9999999999999999999876655321 12345899999999
Q ss_pred CCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCc
Q 000268 404 GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDN 483 (1757)
Q Consensus 404 G~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (1757)
|.+|.+|..||.|+|||+..+ ..+..+.+|+++|..|+|+-+| -+
T Consensus 359 gLifgtgt~d~~vkiwdlks~---------~~~a~Fpght~~vk~i~FsENG--------------------------Y~ 403 (506)
T KOG0289|consen 359 GLIFGTGTPDGVVKIWDLKSQ---------TNVAKFPGHTGPVKAISFSENG--------------------------YW 403 (506)
T ss_pred ceEEeccCCCceEEEEEcCCc---------cccccCCCCCCceeEEEeccCc--------------------------eE
Confidence 999999999999999999653 3567889999999999999987 48
Q ss_pred EEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCe
Q 000268 484 IVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCR 563 (1757)
Q Consensus 484 LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~ 563 (1757)
|++++.|+.|++||++..+.... .......+|.++.|.+.|++|+.++.|=.
T Consensus 404 Lat~add~~V~lwDLRKl~n~kt----------------------------~~l~~~~~v~s~~fD~SGt~L~~~g~~l~ 455 (506)
T KOG0289|consen 404 LATAADDGSVKLWDLRKLKNFKT----------------------------IQLDEKKEVNSLSFDQSGTYLGIAGSDLQ 455 (506)
T ss_pred EEEEecCCeEEEEEehhhcccce----------------------------eeccccccceeEEEcCCCCeEEeecceeE
Confidence 99999999999999995331100 11223347999999999999999988877
Q ss_pred EEEEECC--CCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000268 564 ICVWNAA--DGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1757)
Q Consensus 564 I~IWDl~--tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl 612 (1757)
|++++-. ...++..+..|.+..+++.|.. ..++++++|.|..++|+.+
T Consensus 456 Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~-~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 456 VYICKKKTKSWTEIKELADHSGLSTGVRFGE-HAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEEEecccccceeeehhhhcccccceeeecc-cceEEeeccchhheEEeec
Confidence 7777743 5678888888998899999977 6789999999999888764
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-23 Score=230.12 Aligned_cols=296 Identities=18% Similarity=0.243 Sum_probs=234.1
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCC------------C------CceEEecCCCCceEEEEecCCCC
Q 000268 279 ASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPD------------G------LPISVLRGHTAAVTAIAFSPRPG 340 (1757)
Q Consensus 279 ~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~t------------g------~~l~~l~gH~~~VtsLafSPdg~ 340 (1757)
..+..|.+.+.+.+|++||.++|+|+.|..|+|.|++. | -.+++|-.|...|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 34567999999999999999999999999999999861 1 24677888999999999999886
Q ss_pred ceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEec
Q 000268 341 SVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420 (1757)
Q Consensus 341 ~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWD 420 (1757)
.|++++.|++|++||+........+.. ......|.++.|+|.|.+|++|....++++||
T Consensus 186 ---ILiS~srD~tvKlFDfsK~saKrA~K~------------------~qd~~~vrsiSfHPsGefllvgTdHp~~rlYd 244 (430)
T KOG0640|consen 186 ---ILISGSRDNTVKLFDFSKTSAKRAFKV------------------FQDTEPVRSISFHPSGEFLLVGTDHPTLRLYD 244 (430)
T ss_pred ---eEEeccCCCeEEEEecccHHHHHHHHH------------------hhccceeeeEeecCCCceEEEecCCCceeEEe
Confidence 999999999999999875443322211 12345699999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCC
Q 000268 421 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 500 (1757)
Q Consensus 421 l~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t 500 (1757)
+.+.++..... .-.+|.+.|+++.+++.+ .+.++++.||.|+|||--+
T Consensus 245 v~T~Qcfvsan------Pd~qht~ai~~V~Ys~t~--------------------------~lYvTaSkDG~IklwDGVS 292 (430)
T KOG0640|consen 245 VNTYQCFVSAN------PDDQHTGAITQVRYSSTG--------------------------SLYVTASKDGAIKLWDGVS 292 (430)
T ss_pred ccceeEeeecC------cccccccceeEEEecCCc--------------------------cEEEEeccCCcEEeecccc
Confidence 98765533322 235799999999999887 6899999999999999876
Q ss_pred CCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeC
Q 000268 501 RRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTG 580 (1757)
Q Consensus 501 ~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~g 580 (1757)
+++...+.. ......|.+..|+.+|+||++.+.|..|++|.+.+|+++..+.|
T Consensus 293 ~rCv~t~~~---------------------------AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtG 345 (430)
T KOG0640|consen 293 NRCVRTIGN---------------------------AHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTG 345 (430)
T ss_pred HHHHHHHHh---------------------------hcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEec
Confidence 553322111 11234699999999999999999999999999999999999876
Q ss_pred CC--C---CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-ecCcceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 000268 581 HT--E---STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE-ISRFRLVDGKFSPDGASIILSDDVGQLYILNT 654 (1757)
Q Consensus 581 H~--~---~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~-~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl 654 (1757)
-. + --+...|......+|.---..+.++-||.+++..+..+. +|++.+..+.-||.+.-+.++++|-.+++|--
T Consensus 346 Ag~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 346 AGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred CCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 42 1 123345555333333333345679999999987776654 67788999999999999999999999999964
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-22 Score=252.29 Aligned_cols=251 Identities=18% Similarity=0.247 Sum_probs=190.2
Q ss_pred EcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCC-CCEEEEEeCCceEEEEECCCCC--------ceEEecCCCCceE
Q 000268 261 GSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSN-NALVASASNDCIIRVWRLPDGL--------PISVLRGHTAAVT 331 (1757)
Q Consensus 261 GS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPD-g~lLASgS~DGtIrVWDl~tg~--------~l~~l~gH~~~Vt 331 (1757)
|+.++.|++|+......+..+.+|.+.|.+++|+|+ +.+||+|+.||+|+|||+.++. ++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 667899999999888888999999999999999997 7899999999999999997642 3456789999999
Q ss_pred EEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEee
Q 000268 332 AIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS 411 (1757)
Q Consensus 332 sLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs 411 (1757)
+++|+|++. .+|++++.|++|+|||+++++....+. +...|.+++|+|+|.+|++++
T Consensus 130 sVaf~P~g~--~iLaSgS~DgtIrIWDl~tg~~~~~i~---------------------~~~~V~SlswspdG~lLat~s 186 (568)
T PTZ00420 130 IIDWNPMNY--YIMCSSGFDSFVNIWDIENEKRAFQIN---------------------MPKKLSSLKWNIKGNLLSGTC 186 (568)
T ss_pred EEEECCCCC--eEEEEEeCCCeEEEEECCCCcEEEEEe---------------------cCCcEEEEEECCCCCEEEEEe
Confidence 999999875 256799999999999999886543331 234699999999999999999
Q ss_pred CCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCC
Q 000268 412 SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG 491 (1757)
Q Consensus 412 ~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DG 491 (1757)
.|+.|+|||++++ ..+..+.+|.+.+....
T Consensus 187 ~D~~IrIwD~Rsg---------~~i~tl~gH~g~~~s~~----------------------------------------- 216 (568)
T PTZ00420 187 VGKHMHIIDPRKQ---------EIASSFHIHDGGKNTKN----------------------------------------- 216 (568)
T ss_pred cCCEEEEEECCCC---------cEEEEEecccCCceeEE-----------------------------------------
Confidence 9999999999753 23445556654432221
Q ss_pred eEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCC----eEEEE
Q 000268 492 SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC----RICVW 567 (1757)
Q Consensus 492 tI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG----~I~IW 567 (1757)
+....|++++.+|++++.|+ .|+||
T Consensus 217 ---------------------------------------------------v~~~~fs~d~~~IlTtG~d~~~~R~VkLW 245 (568)
T PTZ00420 217 ---------------------------------------------------IWIDGLGGDDNYILSTGFSKNNMREMKLW 245 (568)
T ss_pred ---------------------------------------------------EEeeeEcCCCCEEEEEEcCCCCccEEEEE
Confidence 11234667888888877664 69999
Q ss_pred ECCC-CceEEEEeC--CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEe--ecCcceEEEEEcCCC
Q 000268 568 NAAD-GSLVHSLTG--HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE--ISRFRLVDGKFSPDG 637 (1757)
Q Consensus 568 Dl~t-gkll~~L~g--H~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~--~~~~~VtslafSPDG 637 (1757)
|+.+ ++++..+.. +.+.+.. .|.++++.++++|+.|+.|++|++..+.. ..+. .+..++..++|.|..
T Consensus 246 Dlr~~~~pl~~~~ld~~~~~L~p-~~D~~tg~l~lsGkGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 246 DLKNTTSALVTMSIDNASAPLIP-HYDESTGLIYLIGKGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred ECCCCCCceEEEEecCCccceEE-eeeCCCCCEEEEEECCCeEEEEEccCCcE-EeecccccCCCccceEEcccc
Confidence 9885 566665443 2333323 34455788899999999999999987743 2222 134567788888864
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=238.30 Aligned_cols=284 Identities=18% Similarity=0.264 Sum_probs=234.7
Q ss_pred CCCCeEEEEEcCCCCE-EEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCC
Q 000268 284 HEGDITDLAVSSNNAL-VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 362 (1757)
Q Consensus 284 H~~~VtsLafSPDg~l-LASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg 362 (1757)
..+.|.+++|+|...+ +|+++ .-.|.||+..+...+..+......|.++.|..||. +|++|+..|.|+|||+.+.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~---LlaaGD~sG~V~vfD~k~r 100 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGR---LLAAGDESGHVKVFDMKSR 100 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCe---EEEccCCcCcEEEeccccH
Confidence 3468999999996543 34333 34799999988888888877889999999999997 8999999999999997654
Q ss_pred CccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCC-CCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecC
Q 000268 363 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG 441 (1757)
Q Consensus 363 ~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpd-G~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~g 441 (1757)
..+..+ ..|..++..+.|+|. +..|++|+.|+.+++||+.+. .....+.+
T Consensus 101 ~iLR~~--------------------~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a---------~v~~~l~~ 151 (487)
T KOG0310|consen 101 VILRQL--------------------YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA---------YVQAELSG 151 (487)
T ss_pred HHHHHH--------------------hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc---------EEEEEecC
Confidence 333333 358888999999995 567788888999999999752 23557899
Q ss_pred CCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCC
Q 000268 442 HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPP 521 (1757)
Q Consensus 442 H~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~ 521 (1757)
|++.|.+.+|+|.. +..++||+.||.|++||+++..
T Consensus 152 htDYVR~g~~~~~~-------------------------~hivvtGsYDg~vrl~DtR~~~------------------- 187 (487)
T KOG0310|consen 152 HTDYVRCGDISPAN-------------------------DHIVVTGSYDGKVRLWDTRSLT------------------- 187 (487)
T ss_pred CcceeEeeccccCC-------------------------CeEEEecCCCceEEEEEeccCC-------------------
Confidence 99999999999864 3589999999999999998521
Q ss_pred CCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCC-ceEEEEeCCCCCeEEEEEecCCCcEEEE
Q 000268 522 PMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG-SLVHSLTGHTESTYVLDVHPFNPRIAMS 600 (1757)
Q Consensus 522 ~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tg-kll~~L~gH~~~VtsLafSPdd~~lLaS 600 (1757)
.......|..+|..+.+-|.|..||+++. ..|+|||+.+| +++..+..|...|+|+.+.. ++.-|+|
T Consensus 188 ----------~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s-~~~rLlS 255 (487)
T KOG0310|consen 188 ----------SRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS-DSTRLLS 255 (487)
T ss_pred ----------ceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeec-CCceEee
Confidence 23344568889999999999999999886 48999999865 45555556999999999988 5677789
Q ss_pred EeCCCcEEEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 000268 601 AGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 657 (1757)
Q Consensus 601 gs~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~tG 657 (1757)
|+-|+.|+|||+.+.+.+..+. ..++|.+++.+||++.+++|-.+|.+.+-+....
T Consensus 256 ~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 256 GSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred cccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehhhcc
Confidence 9999999999998999998886 7789999999999999999999999988865444
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=218.16 Aligned_cols=253 Identities=19% Similarity=0.295 Sum_probs=219.5
Q ss_pred ceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEE
Q 000268 319 PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCC 398 (1757)
Q Consensus 319 ~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sl 398 (1757)
.+..+.+|.++|..+.|.-+|+ +.++++.|.+|++|+...+.++.+. .+|...|..+
T Consensus 9 r~~~l~~~qgaV~avryN~dGn---Y~ltcGsdrtvrLWNp~rg~liktY--------------------sghG~EVlD~ 65 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGN---YCLTCGSDRTVRLWNPLRGALIKTY--------------------SGHGHEVLDA 65 (307)
T ss_pred hceeecccccceEEEEEccCCC---EEEEcCCCceEEeecccccceeeee--------------------cCCCceeeec
Confidence 3567788999999999999998 9999999999999999998887765 3688899999
Q ss_pred EECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccc
Q 000268 399 AFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478 (1757)
Q Consensus 399 afSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~ 478 (1757)
+.+.|...|++|+.|..|.+||+.+ ++.++.+.+|.+.|+.++|+...
T Consensus 66 ~~s~Dnskf~s~GgDk~v~vwDV~T---------Gkv~Rr~rgH~aqVNtV~fNees----------------------- 113 (307)
T KOG0316|consen 66 ALSSDNSKFASCGGDKAVQVWDVNT---------GKVDRRFRGHLAQVNTVRFNEES----------------------- 113 (307)
T ss_pred cccccccccccCCCCceEEEEEccc---------CeeeeecccccceeeEEEecCcc-----------------------
Confidence 9999999999999999999999977 56788999999999999999765
Q ss_pred cCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEE
Q 000268 479 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA 558 (1757)
Q Consensus 479 ~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSG 558 (1757)
..+++|+.|.++++||.++.. ..|++.+......|.+|..+ +..|++|
T Consensus 114 ---SVv~SgsfD~s~r~wDCRS~s---------------------------~ePiQildea~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 114 ---SVVASGSFDSSVRLWDCRSRS---------------------------FEPIQILDEAKDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred ---eEEEeccccceeEEEEcccCC---------------------------CCccchhhhhcCceeEEEec--ccEEEee
Confidence 689999999999999998633 34555566667788888764 6789999
Q ss_pred ecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCcce--EEEEEcCC
Q 000268 559 IMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRL--VDGKFSPD 636 (1757)
Q Consensus 559 s~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~V--tslafSPD 636 (1757)
+.||+++.||++.|.+..-.-+| +|+++.|++ ++..++.++.|++|++.|-.+|++++.+.+|...- .+++++..
T Consensus 162 S~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~-d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qs 238 (307)
T KOG0316|consen 162 SVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSK-DGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQS 238 (307)
T ss_pred ccCCcEEEEEeecceeehhhcCC--cceeEEecC-CCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeeccc
Confidence 99999999999999887766655 699999999 66677788999999999999999999999887643 46788888
Q ss_pred CCEEEEEeCCCeEEEEECCCCcccc
Q 000268 637 GASIILSDDVGQLYILNTGQGESQK 661 (1757)
Q Consensus 637 Gk~LAsgs~DG~I~IWdl~tGe~~~ 661 (1757)
...+++|+.||.|++||+..+..+.
T Consensus 239 dthV~sgSEDG~Vy~wdLvd~~~~s 263 (307)
T KOG0316|consen 239 DTHVFSGSEDGKVYFWDLVDETQIS 263 (307)
T ss_pred ceeEEeccCCceEEEEEeccceeee
Confidence 9999999999999999998775543
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-20 Score=219.57 Aligned_cols=362 Identities=13% Similarity=0.222 Sum_probs=258.1
Q ss_pred CccccccceeEEEEccCCCCEEEEEECC--CCCEEEEE--cCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 000268 226 PSTMVQKMQNIKRVRGHRNAVYCAIFDR--SGRYVITG--SDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVA 301 (1757)
Q Consensus 226 ~~~~~~~~k~l~tL~GH~~~V~~VaFSP--DG~~LATG--S~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLA 301 (1757)
..|+..++..++.|..-...|.||+||+ .|.+|+.- +.+..+.|||++.+..+...+.-...|..+.|.|.+..|+
T Consensus 137 riWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nli 216 (626)
T KOG2106|consen 137 RIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLI 216 (626)
T ss_pred eecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEE
Confidence 3577777888888888888999999998 35555544 4567899999999888877777788899999999777666
Q ss_pred EEeCCceEEEEECCCCCceEE---ecCC-CCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccc
Q 000268 302 SASNDCIIRVWRLPDGLPISV---LRGH-TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAV 377 (1757)
Q Consensus 302 SgS~DGtIrVWDl~tg~~l~~---l~gH-~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~ 377 (1757)
..+..|.+.+|+++.+...+. +..+ ...|.|++|.+++. +++|..+|.|.||+..+.+..+...
T Consensus 217 it~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd----viTgDS~G~i~Iw~~~~~~~~k~~~-------- 284 (626)
T KOG2106|consen 217 ITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD----VITGDSGGNILIWSKGTNRISKQVH-------- 284 (626)
T ss_pred EEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC----EEeecCCceEEEEeCCCceEEeEee--------
Confidence 666678999999998865543 3333 36799999999985 9999999999999997766544432
Q ss_pred cCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCC---CCCcceeeecCCCCCceEEEEccC
Q 000268 378 AGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD---QPNHEIDVLSGHENDVNYVQFSGC 454 (1757)
Q Consensus 378 ~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~---~~~~~i~~l~gH~~~V~sLafSpd 454 (1757)
.|.+.|.+++...+|.+|- |+.|..|..||-.-.+..... +.+..-....++.+ ..+--+.+
T Consensus 285 ------------aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN 349 (626)
T KOG2106|consen 285 ------------AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRN 349 (626)
T ss_pred ------------ecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCc--EEEeeccc
Confidence 5888999999999998555 999999999994221111110 11111111222222 01111110
Q ss_pred ccccccccccCCCCCCCCc----ccccc-----cCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCC
Q 000268 455 AVASRFSLADSSKEDSTPK----FKNSW-----FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPP 525 (1757)
Q Consensus 455 g~~s~~~~~~~~~~~~~~~----~~~~~-----~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~ 525 (1757)
.+ +........... ....| .+.+.+++++.|+.+++|+-. ...|...
T Consensus 350 ~i-----L~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~-------k~~wt~~------------ 405 (626)
T KOG2106|consen 350 FI-----LQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDH-------KLEWTKI------------ 405 (626)
T ss_pred eE-----EEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCC-------ceeEEEE------------
Confidence 00 000000000000 00111 335789999999999999822 1233322
Q ss_pred CCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCC
Q 000268 526 QPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDG 605 (1757)
Q Consensus 526 ~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG 605 (1757)
...++.|+.|.|.| .||.|+..|...|.|.++..++..-.. ...++++.|+| ++.+||.|+.|+
T Consensus 406 -------------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp-~G~~lAvgs~d~ 469 (626)
T KOG2106|consen 406 -------------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSP-DGAFLAVGSHDN 469 (626)
T ss_pred -------------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcC-CCCEEEEecCCC
Confidence 23567899999999 999999999999999999777666555 88999999999 788999999999
Q ss_pred cEEEEeCCCC-ceEEEEe-ecCcceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 000268 606 KTIVWDIWEG-IPIRIYE-ISRFRLVDGKFSPDGASIILSDDVGQLYILNT 654 (1757)
Q Consensus 606 ~IrIWDl~tg-~~l~~l~-~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl 654 (1757)
.|+||.+..+ .....+. .+..+|+.+.||+|+++|.+-+.|-.|..|..
T Consensus 470 ~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 470 HIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred eEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence 9999999754 3333332 23378999999999999999999999999943
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-21 Score=218.46 Aligned_cols=290 Identities=16% Similarity=0.236 Sum_probs=235.4
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeC--CCc
Q 000268 276 YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD--DGT 353 (1757)
Q Consensus 276 ~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~--DGt 353 (1757)
+..+.++...+.|.+|.|+++|.+|++++.|.+|+|||..+|+.+.++..+.-.|..++|..... .++.++. |.+
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~---~~i~sStk~d~t 81 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSN---TVIHSSTKEDDT 81 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCc---eEEEccCCCCCc
Confidence 34455666678999999999999999999999999999999999999998888899999987765 5555555 889
Q ss_pred EEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCC
Q 000268 354 CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPN 433 (1757)
Q Consensus 354 IrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~ 433 (1757)
|+..++.+.+.++.+ .+|...|.+++.+|-+..+++++.|++|++||++..++.
T Consensus 82 IryLsl~dNkylRYF--------------------~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cq------ 135 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYF--------------------PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQ------ 135 (311)
T ss_pred eEEEEeecCceEEEc--------------------CCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCc------
Confidence 999999999877665 479999999999999999999999999999999864431
Q ss_pred cceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCccccccccc
Q 000268 434 HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQA 513 (1757)
Q Consensus 434 ~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~ 513 (1757)
..+ +...-..++|.|.| -.+|++...+.|++||++.-.
T Consensus 136 ---g~l--~~~~~pi~AfDp~G--------------------------LifA~~~~~~~IkLyD~Rs~d----------- 173 (311)
T KOG1446|consen 136 ---GLL--NLSGRPIAAFDPEG--------------------------LIFALANGSELIKLYDLRSFD----------- 173 (311)
T ss_pred ---eEE--ecCCCcceeECCCC--------------------------cEEEEecCCCeEEEEEecccC-----------
Confidence 111 12223457788887 367777777799999999622
Q ss_pred ccccCCCCCCCCCCCCCCCceeec---CCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCe---EE
Q 000268 514 YHLKVPPPPMPPQPPRGGPRQRIL---PTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTEST---YV 587 (1757)
Q Consensus 514 ~~l~~~~~~~~~~~~~~~~~~~l~---~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~V---ts 587 (1757)
.+|...+. ......+.|.|||||++|+.++..+.+++.|.-+|..+.++.++...- ..
T Consensus 174 ----------------kgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~ 237 (311)
T KOG1446|consen 174 ----------------KGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLS 237 (311)
T ss_pred ----------------CCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCccee
Confidence 11111111 335668899999999999999999999999999999999998876543 56
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee-cCcceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 000268 588 LDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEI-SRFRLVDGKFSPDGASIILSDDVGQLYILNTG 655 (1757)
Q Consensus 588 LafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~-~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~ 655 (1757)
.+|.| +++++++|+.||+|.+|++.+|..+..+.+ +.+++.++.|.|.-.++|+++. .+.+|=..
T Consensus 238 a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s--~l~fw~p~ 303 (311)
T KOG1446|consen 238 ATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS--NLVFWLPD 303 (311)
T ss_pred EEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc--eEEEEecc
Confidence 78999 788999999999999999999999999987 4678899999998888887765 56666543
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-22 Score=243.11 Aligned_cols=279 Identities=19% Similarity=0.269 Sum_probs=234.7
Q ss_pred EEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCcccee
Q 000268 289 TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRI 368 (1757)
Q Consensus 289 tsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i 368 (1757)
.-+.|+. .+.||+|. ...|.+|+..++........+...|+++.|+++|. +|++|..+|.|.|||....+.+..+
T Consensus 181 nlldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~---~LavG~~~g~v~iwD~~~~k~~~~~ 255 (484)
T KOG0305|consen 181 NLLDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGS---HLAVGTSDGTVQIWDVKEQKKTRTL 255 (484)
T ss_pred hHhhccc-CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCC---EEEEeecCCeEEEEehhhccccccc
Confidence 3466884 44676664 45799999999987666666689999999999998 9999999999999999877655554
Q ss_pred ecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceE
Q 000268 369 YIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNY 448 (1757)
Q Consensus 369 ~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~s 448 (1757)
. ..|...|-+++|. +..+.+|+.++.|.++|++.... .+..+.+|...|..
T Consensus 256 ~-------------------~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~--------~~~~~~~H~qeVCg 306 (484)
T KOG0305|consen 256 R-------------------GSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH--------VVSTLQGHRQEVCG 306 (484)
T ss_pred c-------------------CCcCceeEEEecc--CceEEEecCCCcEEEEEEecchh--------hhhhhhcccceeee
Confidence 2 1278889999997 77899999999999999986432 22248899999999
Q ss_pred EEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCC
Q 000268 449 VQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPP 528 (1757)
Q Consensus 449 LafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~ 528 (1757)
+.|++++ .++++|+.|+.+.|||...
T Consensus 307 Lkws~d~--------------------------~~lASGgnDN~~~Iwd~~~---------------------------- 332 (484)
T KOG0305|consen 307 LKWSPDG--------------------------NQLASGGNDNVVFIWDGLS---------------------------- 332 (484)
T ss_pred eEECCCC--------------------------CeeccCCCccceEeccCCC----------------------------
Confidence 9999987 7999999999999999853
Q ss_pred CCCCceeecCCCCCeeEEEEcCC-CCEEEEE--ecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEe-CC
Q 000268 529 RGGPRQRILPTPRGVNMIVWSLD-NRFVLAA--IMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAG-YD 604 (1757)
Q Consensus 529 ~~~~~~~l~~h~~~VtsVafSPD-G~~LaSG--s~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs-~D 604 (1757)
..+...+..|...|.+++|+|- ..+||+| +.|+.|++||..+|+.+..+.. ...|..|.|++....++.+-| .+
T Consensus 333 -~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~ 410 (484)
T KOG0305|consen 333 -PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSE 410 (484)
T ss_pred -ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCC
Confidence 3466778899999999999994 4567774 5799999999999999998874 456999999996666666544 57
Q ss_pred CcEEEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 000268 605 GKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 657 (1757)
Q Consensus 605 G~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~tG 657 (1757)
+.|.||+..+.+++..+.+|...|..+++||||..|++|+.|.+|++|++-..
T Consensus 411 n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 411 NQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 78999999999999999999999999999999999999999999999998653
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-22 Score=223.44 Aligned_cols=274 Identities=19% Similarity=0.303 Sum_probs=204.7
Q ss_pred cCCCCEEEEEECC-CCCEEEEEcCCceEEEEecCC-CeEEE-EEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCC
Q 000268 241 GHRNAVYCAIFDR-SGRYVITGSDDRLVKIWSMET-AYCLA-SCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG 317 (1757)
Q Consensus 241 GH~~~V~~VaFSP-DG~~LATGS~DGtIkIWDl~t-g~~l~-tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg 317 (1757)
.-.+.|.+|+||| ...+|+.||.||+|++|+++. |..+- ....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 3467899999999 556677999999999999976 44443 34579999999999999999999999999999999999
Q ss_pred CceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEE
Q 000268 318 LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFC 397 (1757)
Q Consensus 318 ~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~s 397 (1757)
+ +..+..|.++|.++.|-+.... ..|++|+.|.+|++||.+....+.++.++ ..+.+
T Consensus 105 Q-~~~v~~Hd~pvkt~~wv~~~~~-~cl~TGSWDKTlKfWD~R~~~pv~t~~LP---------------------eRvYa 161 (347)
T KOG0647|consen 105 Q-VSQVAAHDAPVKTCHWVPGMNY-QCLVTGSWDKTLKFWDTRSSNPVATLQLP---------------------ERVYA 161 (347)
T ss_pred C-eeeeeecccceeEEEEecCCCc-ceeEecccccceeecccCCCCeeeeeecc---------------------ceeee
Confidence 4 5666779999999999886542 37999999999999999977766665432 22333
Q ss_pred EEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCccccc
Q 000268 398 CAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNS 477 (1757)
Q Consensus 398 lafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~ 477 (1757)
+.. -..+++++..+..|.+|++..+.. .+..+..
T Consensus 162 ~Dv--~~pm~vVata~r~i~vynL~n~~t-----------e~k~~~S--------------------------------- 195 (347)
T KOG0647|consen 162 ADV--LYPMAVVATAERHIAVYNLENPPT-----------EFKRIES--------------------------------- 195 (347)
T ss_pred hhc--cCceeEEEecCCcEEEEEcCCCcc-----------hhhhhcC---------------------------------
Confidence 332 233566666677777777743211 0111110
Q ss_pred ccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEE
Q 000268 478 WFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA 557 (1757)
Q Consensus 478 ~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaS 557 (1757)
...-.++||+.-+|....+.
T Consensus 196 ------------------------------------------------------------pLk~Q~R~va~f~d~~~~al 215 (347)
T KOG0647|consen 196 ------------------------------------------------------------PLKWQTRCVACFQDKDGFAL 215 (347)
T ss_pred ------------------------------------------------------------cccceeeEEEEEecCCceEe
Confidence 01123556666666666677
Q ss_pred EecCCeEEEEECCCC--ceEEEEeCCCC---------CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCc
Q 000268 558 AIMDCRICVWNAADG--SLVHSLTGHTE---------STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRF 626 (1757)
Q Consensus 558 Gs~DG~I~IWDl~tg--kll~~L~gH~~---------~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~ 626 (1757)
|+-.|.+.|..+..+ +.-.+|+.|.. .|++|+|+| -...|+|+|.||++.+||-.....+.....+..
T Consensus 216 GsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP-~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~q 294 (347)
T KOG0647|consen 216 GSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP-VHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQ 294 (347)
T ss_pred eeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec-ccceEEEecCCceEEEecchhhhhhhccCcCCC
Confidence 777777777777665 33345555542 367899999 555778999999999999999999999999999
Q ss_pred ceEEEEEcCCCCEEEEEe
Q 000268 627 RLVDGKFSPDGASIILSD 644 (1757)
Q Consensus 627 ~VtslafSPDGk~LAsgs 644 (1757)
+|+++.|+.+|.++|.+.
T Consensus 295 pItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 295 PITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ccceeEecCCCCEEEEEe
Confidence 999999999999999763
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-22 Score=223.40 Aligned_cols=297 Identities=20% Similarity=0.336 Sum_probs=227.4
Q ss_pred EEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCC-----------------C-eEEEEEecCCCCeEEEEEcCCC
Q 000268 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET-----------------A-YCLASCRGHEGDITDLAVSSNN 297 (1757)
Q Consensus 236 l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~t-----------------g-~~l~tL~gH~~~VtsLafSPDg 297 (1757)
...|..|.+++.|.+|++||.++|||+.|..|+|.|++. + -.+++|..|...|.++.|+|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 456888999999999999999999999999999999861 1 3577888999999999999999
Q ss_pred CEEEEEeCCceEEEEECCCCCceEEe--cCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCc
Q 000268 298 ALVASASNDCIIRVWRLPDGLPISVL--RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSD 375 (1757)
Q Consensus 298 ~lLASgS~DGtIrVWDl~tg~~l~~l--~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~ 375 (1757)
.+|++|+.|++|+++|+......+.+ -....+|.+|.|+|.|. +|+.|..-.++++||+.+-++...-
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGe---fllvgTdHp~~rlYdv~T~Qcfvsa------- 254 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGE---FLLVGTDHPTLRLYDVNTYQCFVSA------- 254 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCc---eEEEecCCCceeEEeccceeEeeec-------
Confidence 99999999999999999754322222 12467899999999998 8999999999999999987653221
Q ss_pred cccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeee-cCCCC-CceEEEEcc
Q 000268 376 AVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVL-SGHEN-DVNYVQFSG 453 (1757)
Q Consensus 376 ~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l-~gH~~-~V~sLafSp 453 (1757)
.....|.+.|+++.+++.|++.++|+.||.|++||--++ +++..+ ..|.+ .|.+..|..
T Consensus 255 ----------nPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~---------rCv~t~~~AH~gsevcSa~Ftk 315 (430)
T KOG0640|consen 255 ----------NPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSN---------RCVRTIGNAHGGSEVCSAVFTK 315 (430)
T ss_pred ----------CcccccccceeEEEecCCccEEEEeccCCcEEeeccccH---------HHHHHHHhhcCCceeeeEEEcc
Confidence 123458889999999999999999999999999997553 334333 34544 588888988
Q ss_pred CccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCc
Q 000268 454 CAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPR 533 (1757)
Q Consensus 454 dg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~ 533 (1757)
++ .++++.+.|..+++|.+.+++.......- ...+...
T Consensus 316 n~--------------------------kyiLsSG~DS~vkLWEi~t~R~l~~YtGA----------------g~tgrq~ 353 (430)
T KOG0640|consen 316 NG--------------------------KYILSSGKDSTVKLWEISTGRMLKEYTGA----------------GTTGRQK 353 (430)
T ss_pred CC--------------------------eEEeecCCcceeeeeeecCCceEEEEecC----------------Ccccchh
Confidence 76 79999999999999999987643211100 0000000
Q ss_pred eeecCCCCCeeEEEEcCCCCEEEEEe-cCCeEEEEECCCCceEEEE-eCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000268 534 QRILPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAADGSLVHSL-TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1757)
Q Consensus 534 ~~l~~h~~~VtsVafSPDG~~LaSGs-~DG~I~IWDl~tgkll~~L-~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWD 611 (1757)
.-+...|.....|++.-. ..+.++-||.+++..+..+ -||.+.+..+.-|| ..-.+++|+.|..+++|-
T Consensus 354 --------~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP-~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 354 --------HRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSP-VEPAFMTCSDDFRARFWY 424 (430)
T ss_pred --------hhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCC-CCCceeeecccceeeeee
Confidence 012223444445554432 3467899999998766655 48999999999999 555667999999999995
Q ss_pred C
Q 000268 612 I 612 (1757)
Q Consensus 612 l 612 (1757)
-
T Consensus 425 r 425 (430)
T KOG0640|consen 425 R 425 (430)
T ss_pred e
Confidence 3
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-22 Score=254.81 Aligned_cols=288 Identities=18% Similarity=0.289 Sum_probs=227.3
Q ss_pred CCCCEEEEEECCCCCEEEEEc--CCceEEEEecCC------------CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCc
Q 000268 242 HRNAVYCAIFDRSGRYVITGS--DDRLVKIWSMET------------AYCLASCRGHEGDITDLAVSSNNALVASASNDC 307 (1757)
Q Consensus 242 H~~~V~~VaFSPDG~~LATGS--~DGtIkIWDl~t------------g~~l~tL~gH~~~VtsLafSPDg~lLASgS~DG 307 (1757)
+...|+++..+|||..+|||+ .||.+.||+.+. .+.+.+...|.+.|.|+.|+|||++||+|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 455799999999999999999 899999998742 244566778999999999999999999999999
Q ss_pred eEEEEECCC------------------CCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceee
Q 000268 308 IIRVWRLPD------------------GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIY 369 (1757)
Q Consensus 308 tIrVWDl~t------------------g~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~ 369 (1757)
.|.||.... .+.+..+.+|.+.|..++|+|++. +|++++.|++|.||+..+...+.++
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~---~lvS~s~DnsViiwn~~tF~~~~vl- 167 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS---LLVSVSLDNSVIIWNAKTFELLKVL- 167 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc---EEEEecccceEEEEccccceeeeee-
Confidence 999998762 135778899999999999999987 9999999999999999988665554
Q ss_pred cCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecC------CC
Q 000268 370 IPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG------HE 443 (1757)
Q Consensus 370 l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~g------H~ 443 (1757)
.+|...|..+.|.|-|++||+-+.|++|+||.+.+-. ....+.+ -.
T Consensus 168 -------------------~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~---------i~k~It~pf~~~~~~ 219 (942)
T KOG0973|consen 168 -------------------RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWG---------IEKSITKPFEESPLT 219 (942)
T ss_pred -------------------ecccccccceEECCccCeeeeecCCceEEEEEcccce---------eeEeeccchhhCCCc
Confidence 3688889999999999999999999999999975421 2222222 23
Q ss_pred CCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcC----CCeEEEEeCCCCCCCcccccccccccccCC
Q 000268 444 NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR----DGSAIIWIPRSRRSHPKAARWTQAYHLKVP 519 (1757)
Q Consensus 444 ~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~----DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~ 519 (1757)
..+.-+.|+|+| .+|++.-. -.++.|.+-.+ |
T Consensus 220 T~f~RlSWSPDG--------------------------~~las~nA~n~~~~~~~IieR~t---------W--------- 255 (942)
T KOG0973|consen 220 TFFLRLSWSPDG--------------------------HHLASPNAVNGGKSTIAIIERGT---------W--------- 255 (942)
T ss_pred ceeeecccCCCc--------------------------CeecchhhccCCcceeEEEecCC---------c---------
Confidence 456778899997 45555422 23344443321 2
Q ss_pred CCCCCCCCCCCCCceeecCCCCCeeEEEEcCC-------------CC----EEEEEecCCeEEEEECCCCceEEEEe-CC
Q 000268 520 PPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD-------------NR----FVLAAIMDCRICVWNAADGSLVHSLT-GH 581 (1757)
Q Consensus 520 ~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPD-------------G~----~LaSGs~DG~I~IWDl~tgkll~~L~-gH 581 (1757)
.....+.+|..++.++.|+|. +. .+|+|+.|++|-||.....+++.... -.
T Consensus 256 -----------k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf 324 (942)
T KOG0973|consen 256 -----------KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLF 324 (942)
T ss_pred -----------eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhh
Confidence 223457889999999999881 11 57889999999999998887766443 23
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce
Q 000268 582 TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIP 617 (1757)
Q Consensus 582 ~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~ 617 (1757)
...|..++|+| +|..|+.++.||+|.+..+.....
T Consensus 325 ~~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 325 NKSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred cCceeeeeEcC-CCCeEEEEecCCeEEEEEcchHHh
Confidence 55799999999 777788899999999999866543
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-22 Score=222.89 Aligned_cols=306 Identities=19% Similarity=0.263 Sum_probs=221.7
Q ss_pred eEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEE--EEEe--cCCCCeEEEEEcCCCCEE-EEEeCCceE
Q 000268 235 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCL--ASCR--GHEGDITDLAVSSNNALV-ASASNDCII 309 (1757)
Q Consensus 235 ~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l--~tL~--gH~~~VtsLafSPDg~lL-ASgS~DGtI 309 (1757)
.+.+|+||.+.|+|++|+.||++|||++.|++|+||++.+.... +.++ -.-+..+.++|+||-+-+ +++-...++
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence 34578999999999999999999999999999999999763211 1111 122357889999998744 445556789
Q ss_pred EEEECCC---CCceE---------EecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccc
Q 000268 310 RVWRLPD---GLPIS---------VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAV 377 (1757)
Q Consensus 310 rVWDl~t---g~~l~---------~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~ 377 (1757)
++|.+.. |.... .-+.|.-.|..+-....+. +|++++.|..|++|++. |+.+..+..
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k---~imsas~dt~i~lw~lk-Gq~L~~idt------- 226 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK---YIMSASLDTKICLWDLK-GQLLQSIDT------- 226 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCce---EEEEecCCCcEEEEecC-Cceeeeecc-------
Confidence 9997642 22111 1124566777777776665 99999999999999998 777766632
Q ss_pred cCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccc
Q 000268 378 AGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVA 457 (1757)
Q Consensus 378 ~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~ 457 (1757)
....-+.++.||+|++||+++..-.|+||.+.-.+ ..+.+....+..+.||...|..++|+++.
T Consensus 227 -------------nq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~k-dG~fqev~rvf~LkGH~saV~~~aFsn~S-- 290 (420)
T KOG2096|consen 227 -------------NQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTK-DGTFQEVKRVFSLKGHQSAVLAAAFSNSS-- 290 (420)
T ss_pred -------------ccccccceeeCCCCcEEEEecCCCCceEEEEEecc-CcchhhhhhhheeccchhheeeeeeCCCc--
Confidence 12224567899999999999999999999985322 23344556677899999999999999986
Q ss_pred cccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeec
Q 000268 458 SRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL 537 (1757)
Q Consensus 458 s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~ 537 (1757)
..+++.+.||+++|||+.-.. .....+..+ ...+ .-+.
T Consensus 291 ------------------------~r~vtvSkDG~wriwdtdVrY------------~~~qDpk~L-----k~g~-~pl~ 328 (420)
T KOG2096|consen 291 ------------------------TRAVTVSKDGKWRIWDTDVRY------------EAGQDPKIL-----KEGS-APLH 328 (420)
T ss_pred ------------------------ceeEEEecCCcEEEeeccceE------------ecCCCchHh-----hcCC-cchh
Confidence 689999999999999987321 111110000 0011 0011
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEe-CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000268 538 PTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT-GHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1757)
Q Consensus 538 ~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~-gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl 612 (1757)
........+.++|.|+.|+.+.. ..|++|..++|+..-.+. .|...|.+|+|++ ++++++|+| |..+++..-
T Consensus 329 aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g~~~atcG-dr~vrv~~n 401 (420)
T KOG2096|consen 329 AAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSS-DGKYIATCG-DRYVRVIRN 401 (420)
T ss_pred hcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecC-CCcEEeeec-ceeeeeecC
Confidence 12223347899999999887654 579999999998777664 6899999999999 788888876 777887763
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-23 Score=235.97 Aligned_cols=291 Identities=16% Similarity=0.279 Sum_probs=230.6
Q ss_pred eEEEEccCCCCEEEEEECCCC-CEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEE
Q 000268 235 NIKRVRGHRNAVYCAIFDRSG-RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1757)
Q Consensus 235 ~l~tL~GH~~~V~~VaFSPDG-~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWD 313 (1757)
.+..|.||...|.|+|=+|.. ..+|+|+.||.|+|||+.+..++.++..|.+.|..|++.. ..+++++.|.+|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 355689999999999999987 7899999999999999999999999999999999999986 6788999999999999
Q ss_pred CCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCc
Q 000268 314 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 393 (1757)
Q Consensus 314 l~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~ 393 (1757)
+.. .++.++.+ ...+..|.-+..+. .++|+|.+ |.|||......+..+.. ...
T Consensus 136 ~~~-~p~~tilg-~s~~~gIdh~~~~~---~FaTcGe~--i~IWD~~R~~Pv~smsw--------------------G~D 188 (433)
T KOG0268|consen 136 IDG-PPLHTILG-KSVYLGIDHHRKNS---VFATCGEQ--IDIWDEQRDNPVSSMSW--------------------GAD 188 (433)
T ss_pred ccC-Ccceeeec-cccccccccccccc---cccccCce--eeecccccCCccceeec--------------------CCC
Confidence 864 46666654 34566666665554 68888764 99999977665555432 345
Q ss_pred ceEEEEECCCC-CEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCC
Q 000268 394 QIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 472 (1757)
Q Consensus 394 ~V~slafSpdG-~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~ 472 (1757)
.|.++.|+|.. ..|++++.|+.|.+||++.... .+.+. ....-+.|+|+|.+
T Consensus 189 ti~svkfNpvETsILas~~sDrsIvLyD~R~~~P------l~KVi----~~mRTN~IswnPea----------------- 241 (433)
T KOG0268|consen 189 SISSVKFNPVETSILASCASDRSIVLYDLRQASP------LKKVI----LTMRTNTICWNPEA----------------- 241 (433)
T ss_pred ceeEEecCCCcchheeeeccCCceEEEecccCCc------cceee----eeccccceecCccc-----------------
Confidence 68999999965 5677777999999999987432 11111 12345678999965
Q ss_pred cccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCC
Q 000268 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN 552 (1757)
Q Consensus 473 ~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG 552 (1757)
-.|++|+.|..+..+|++.. ..+.....+|...|..|.|||.|
T Consensus 242 ---------fnF~~a~ED~nlY~~DmR~l----------------------------~~p~~v~~dhvsAV~dVdfsptG 284 (433)
T KOG0268|consen 242 ---------FNFVAANEDHNLYTYDMRNL----------------------------SRPLNVHKDHVSAVMDVDFSPTG 284 (433)
T ss_pred ---------cceeeccccccceehhhhhh----------------------------cccchhhcccceeEEEeccCCCc
Confidence 48999999999999999852 24455667899999999999999
Q ss_pred CEEEEEecCCeEEEEECCCCceEEEEeC-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEE
Q 000268 553 RFVLAAIMDCRICVWNAADGSLVHSLTG-HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIR 619 (1757)
Q Consensus 553 ~~LaSGs~DG~I~IWDl~tgkll~~L~g-H~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~ 619 (1757)
+-+++|+.|.+|+||.+..+...-.+.. .-..|.|+.||- |.++++||+.|+.|++|.....+.+.
T Consensus 285 ~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~-Dskyi~SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 285 QEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM-DSKYIISGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred chhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEec-cccEEEecCCCcceeeeecchhhhcC
Confidence 9999999999999999987654333211 123589999999 88999999999999999886554443
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-23 Score=238.12 Aligned_cols=285 Identities=18% Similarity=0.346 Sum_probs=236.6
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCC--ceEEecCCCCceEEEEecCCCCceEEEEEEeCCCc
Q 000268 276 YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL--PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGT 353 (1757)
Q Consensus 276 ~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~--~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGt 353 (1757)
.....+..|.+.|..+.|-++...|++|+.|..|++|++..++ .+.+|.|..+.|+.+.|.+++. ++++++.|+.
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~---~~iAas~d~~ 242 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNK---HVIAASNDKN 242 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCc---eEEeecCCCc
Confidence 3445567899999999999998999999999999999987665 6778888899999999999987 8999999999
Q ss_pred EEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCC
Q 000268 354 CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPN 433 (1757)
Q Consensus 354 IrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~ 433 (1757)
+++|++...+...++ .+|...|+++.|......+++|+.|.+|++||+.+..+..+.-
T Consensus 243 ~r~Wnvd~~r~~~TL--------------------sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-- 300 (459)
T KOG0288|consen 243 LRLWNVDSLRLRHTL--------------------SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-- 300 (459)
T ss_pred eeeeeccchhhhhhh--------------------cccccceeeehhhccccceeeccccchhhhhhhhhhheecccc--
Confidence 999999988765554 4689999999999877779999999999999996533221111
Q ss_pred cceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCccccccccc
Q 000268 434 HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQA 513 (1757)
Q Consensus 434 ~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~ 513 (1757)
....+..|..++ ..+++|..|+.|++||.++..
T Consensus 301 --------~~S~cnDI~~~~----------------------------~~~~SgH~DkkvRfwD~Rs~~----------- 333 (459)
T KOG0288|consen 301 --------PGSQCNDIVCSI----------------------------SDVISGHFDKKVRFWDIRSAD----------- 333 (459)
T ss_pred --------ccccccceEecc----------------------------eeeeecccccceEEEeccCCc-----------
Confidence 122344444432 368899999999999998633
Q ss_pred ccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCC----CCCeEEEE
Q 000268 514 YHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH----TESTYVLD 589 (1757)
Q Consensus 514 ~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH----~~~VtsLa 589 (1757)
.....+..+.|+++..+++|..|.+++.|.++.+.|+.+.+..+.+.+. ....+.+.
T Consensus 334 -------------------~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvv 394 (459)
T KOG0288|consen 334 -------------------KTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVV 394 (459)
T ss_pred -------------------eeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeE
Confidence 1122334458999999999999999999999999999999888887532 23478999
Q ss_pred EecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCc--ceEEEEEcCCCCEEEEEeCCCeEEEE
Q 000268 590 VHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRF--RLVDGKFSPDGASIILSDDVGQLYIL 652 (1757)
Q Consensus 590 fSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~--~VtslafSPDGk~LAsgs~DG~I~IW 652 (1757)
||| ++.|+++||.||.|+||++.+|++...+..... .|++++|+|.|..|++++.++.+.+|
T Consensus 395 fSp-d~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 395 FSP-DGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ECC-CCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 999 889999999999999999999999998876555 49999999999999999999999999
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=236.07 Aligned_cols=281 Identities=19% Similarity=0.268 Sum_probs=232.1
Q ss_pred CCCEEEEEECCCCC--EEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCce
Q 000268 243 RNAVYCAIFDRSGR--YVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI 320 (1757)
Q Consensus 243 ~~~V~~VaFSPDG~--~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l 320 (1757)
.+.|.+++|+|... +.+|+| -.|.||+..+...++++......|.+++|-.||++||+|...|.|+|+|+.+...+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S--~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS--VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred cCcceeEecCCCCCCceEEecc--cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 36799999999543 344444 47999999988888888778899999999999999999999999999998777778
Q ss_pred EEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEE
Q 000268 321 SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 400 (1757)
Q Consensus 321 ~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slaf 400 (1757)
+.+.+|+.+|..+.|+|.+. ..|++|+.|+.+++||+.+... .+. ..+|...|.|.+|
T Consensus 104 R~~~ah~apv~~~~f~~~d~--t~l~s~sDd~v~k~~d~s~a~v--~~~------------------l~~htDYVR~g~~ 161 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDN--TMLVSGSDDKVVKYWDLSTAYV--QAE------------------LSGHTDYVRCGDI 161 (487)
T ss_pred HHHhhccCceeEEEecccCC--eEEEecCCCceEEEEEcCCcEE--EEE------------------ecCCcceeEeecc
Confidence 89999999999999999876 4889999999999999998763 221 2468899999999
Q ss_pred CCC-CCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCccccccc
Q 000268 401 NAN-GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWF 479 (1757)
Q Consensus 401 Spd-G~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~ 479 (1757)
+|. +..+++|+.||.|++||++... ..+ .--.|..+|..+.+.|.|
T Consensus 162 ~~~~~hivvtGsYDg~vrl~DtR~~~--------~~v-~elnhg~pVe~vl~lpsg------------------------ 208 (487)
T KOG0310|consen 162 SPANDHIVVTGSYDGKVRLWDTRSLT--------SRV-VELNHGCPVESVLALPSG------------------------ 208 (487)
T ss_pred ccCCCeEEEecCCCceEEEEEeccCC--------cee-EEecCCCceeeEEEcCCC------------------------
Confidence 994 5689999999999999997631 122 334688899999999986
Q ss_pred CCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEe
Q 000268 480 CHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI 559 (1757)
Q Consensus 480 ~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs 559 (1757)
..|++++ ...+++||+.++. ........|...|+|+++..+++.|++|+
T Consensus 209 --s~iasAg-Gn~vkVWDl~~G~----------------------------qll~~~~~H~KtVTcL~l~s~~~rLlS~s 257 (487)
T KOG0310|consen 209 --SLIASAG-GNSVKVWDLTTGG----------------------------QLLTSMFNHNKTVTCLRLASDSTRLLSGS 257 (487)
T ss_pred --CEEEEcC-CCeEEEEEecCCc----------------------------eehhhhhcccceEEEEEeecCCceEeecc
Confidence 4566655 4589999998633 12223344888999999999999999999
Q ss_pred cCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000268 560 MDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1757)
Q Consensus 560 ~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~ 613 (1757)
-|+.|+|||+.+.+.++.+. -.++|.+++.+| ++..++.|..+|.+.+-+..
T Consensus 258 LD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~-dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 258 LDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSP-DDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred cccceEEEEccceEEEEeee-cccceeeEEecC-CCceEEEecccceeeeehhh
Confidence 99999999999999999887 567899999999 67778889999988877543
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-22 Score=235.75 Aligned_cols=310 Identities=17% Similarity=0.210 Sum_probs=233.5
Q ss_pred CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCC----ceEEe-cCCCCceEEEEecCCCCceEEEEEEe
Q 000268 275 AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL----PISVL-RGHTAAVTAIAFSPRPGSVYQLLSSS 349 (1757)
Q Consensus 275 g~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~----~l~~l-~gH~~~VtsLafSPdg~~~~~LaSgs 349 (1757)
+..--.+.+|+..|.++++.|.|..|++|+.|.+|++||+.... ..+.+ ......|.+++|++.+. .|++.+
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~---~iLvvs 233 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGD---QILVVS 233 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCC---eEEEEe
Confidence 34455678899999999999999999999999999999996431 12222 24556899999999987 777777
Q ss_pred CCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCC-CEEEEeeCCceEEEecCCCCCCCC
Q 000268 350 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDD 428 (1757)
Q Consensus 350 ~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG-~~LasGs~DG~IrVWDl~t~~~~~ 428 (1757)
.....+|+|-.......... .. .-........+|...++|.+|+|.. ..|++++.||++|||++...+.
T Consensus 234 g~aqakl~DRdG~~~~e~~K---GD-----QYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~-- 303 (641)
T KOG0772|consen 234 GSAQAKLLDRDGFEIVEFSK---GD-----QYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS-- 303 (641)
T ss_pred cCcceeEEccCCceeeeeec---cc-----hhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh--
Confidence 78889999966444332221 00 0111233456899999999999965 5789999999999999975431
Q ss_pred CCCCCcce--eeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcc
Q 000268 429 SDQPNHEI--DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPK 506 (1757)
Q Consensus 429 s~~~~~~i--~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~ 506 (1757)
..+.+ ....+..-.++.++|++++ ..|++|..||.|.+|+..+.....
T Consensus 304 ---q~qVik~k~~~g~Rv~~tsC~~nrdg--------------------------~~iAagc~DGSIQ~W~~~~~~v~p- 353 (641)
T KOG0772|consen 304 ---QLQVIKTKPAGGKRVPVTSCAWNRDG--------------------------KLIAAGCLDGSIQIWDKGSRTVRP- 353 (641)
T ss_pred ---heeEEeeccCCCcccCceeeecCCCc--------------------------chhhhcccCCceeeeecCCccccc-
Confidence 11111 1123445578899999987 689999999999999986422110
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeecCCCC--CeeEEEEcCCCCEEEEEecCCeEEEEECCCC-ceEEEEeCCCC
Q 000268 507 AARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR--GVNMIVWSLDNRFVLAAIMDCRICVWNAADG-SLVHSLTGHTE 583 (1757)
Q Consensus 507 ~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~--~VtsVafSPDG~~LaSGs~DG~I~IWDl~tg-kll~~L~gH~~ 583 (1757)
....-..|.. .|+||+||+||++|++-+.|++++|||++.. +++.+..+-..
T Consensus 354 -------------------------~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t 408 (641)
T KOG0772|consen 354 -------------------------VMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPT 408 (641)
T ss_pred -------------------------ceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCc
Confidence 1111223444 7999999999999999999999999999874 45665554322
Q ss_pred --CeEEEEEecCCCcEEEEEe------CCCcEEEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000268 584 --STYVLDVHPFNPRIAMSAG------YDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 653 (1757)
Q Consensus 584 --~VtsLafSPdd~~lLaSgs------~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWd 653 (1757)
.-+.++||| +.++|++|. ..|++.+||..+-..+..+......|..+.|+|-=+.|++|+.||.++||=
T Consensus 409 ~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 409 PFPGTDCCFSP-DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred cCCCCccccCC-CceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 346789999 678888875 457899999999999999888888999999999999999999999999874
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.2e-22 Score=221.04 Aligned_cols=248 Identities=18% Similarity=0.287 Sum_probs=205.0
Q ss_pred cceeEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCC--EEEEEeCCceE
Q 000268 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA--LVASASNDCII 309 (1757)
Q Consensus 232 ~~k~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~--lLASgS~DGtI 309 (1757)
++.++-.+..|.++|+|||.+ |.++|+||.|-+|+|||+.+...+..+-.|.+.|+++.|.++-. .|++|+.||.|
T Consensus 32 ~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i 109 (362)
T KOG0294|consen 32 TLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHI 109 (362)
T ss_pred eeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcE
Confidence 455677789999999999996 88999999999999999999999999999999999999999776 89999999999
Q ss_pred EEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCC
Q 000268 310 RVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 389 (1757)
Q Consensus 310 rVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~ 389 (1757)
.+|+.....++..+++|.+.|+.|+.+|.++ +.++.+.|+.+++||+-.|+......+
T Consensus 110 ~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~K---LALsVg~D~~lr~WNLV~Gr~a~v~~L------------------- 167 (362)
T KOG0294|consen 110 IIWRVGSWELLKSLKAHKGQVTDLSIHPSGK---LALSVGGDQVLRTWNLVRGRVAFVLNL------------------- 167 (362)
T ss_pred EEEEcCCeEEeeeecccccccceeEecCCCc---eEEEEcCCceeeeehhhcCccceeecc-------------------
Confidence 9999999999999999999999999999997 888999999999999998876555433
Q ss_pred CCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCC
Q 000268 390 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 469 (1757)
Q Consensus 390 ~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~ 469 (1757)
....+.+.|+|.|.+|++++.++ |-||.+.+... ...+ .....+.++.|..
T Consensus 168 --~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v---------~~~i-~~~~r~l~~~~l~---------------- 218 (362)
T KOG0294|consen 168 --KNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASV---------FREI-ENPKRILCATFLD---------------- 218 (362)
T ss_pred --CCcceeeEEcCCCCEEEEEeccE-EEEEecccHhH---------hhhh-hccccceeeeecC----------------
Confidence 12234589999999999887654 88998854321 1111 1123455555543
Q ss_pred CCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEE-
Q 000268 470 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW- 548 (1757)
Q Consensus 470 ~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVaf- 548 (1757)
...|++|+.|+.|.+||..+ ..+...+..|...|-.+.+
T Consensus 219 -----------~~~L~vG~d~~~i~~~D~ds-----------------------------~~~~~~~~AH~~RVK~i~~~ 258 (362)
T KOG0294|consen 219 -----------GSELLVGGDNEWISLKDTDS-----------------------------DTPLTEFLAHENRVKDIASY 258 (362)
T ss_pred -----------CceEEEecCCceEEEeccCC-----------------------------CccceeeecchhheeeeEEE
Confidence 35899999999999999874 3345567789999988874
Q ss_pred -cCCCCEEEEEecCCeEEEEECCCC
Q 000268 549 -SLDNRFVLAAIMDCRICVWNAADG 572 (1757)
Q Consensus 549 -SPDG~~LaSGs~DG~I~IWDl~tg 572 (1757)
.|++.+|++++.||.|+|||+...
T Consensus 259 ~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 259 TNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ecCCceEEEEeccCceEEEEEcccc
Confidence 578899999999999999999754
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=236.27 Aligned_cols=283 Identities=19% Similarity=0.292 Sum_probs=237.6
Q ss_pred CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCce--EEecCCCCceEE-EEecCCCCceEEEEEEeCC
Q 000268 275 AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI--SVLRGHTAAVTA-IAFSPRPGSVYQLLSSSDD 351 (1757)
Q Consensus 275 g~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l--~~l~gH~~~Vts-LafSPdg~~~~~LaSgs~D 351 (1757)
-++.+.+.+|...|..+++.+.. .+++++.||++++|+-..+..+ ..+.+|.+.|.+ +++-+..+ -.|++|+.|
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~--~~l~~g~~D 80 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDK--GRLVVGGMD 80 (745)
T ss_pred ceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccC--cceEeeccc
Confidence 35667889999999999987554 8999999999999997655443 456778888877 88876322 269999999
Q ss_pred CcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCC
Q 000268 352 GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQ 431 (1757)
Q Consensus 352 GtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~ 431 (1757)
++|.+|.+........ +.+|...|.|++...++. +++|+-|.+++||-.
T Consensus 81 ~~i~v~~~~~~~P~~~--------------------LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~---------- 129 (745)
T KOG0301|consen 81 TTIIVFKLSQAEPLYT--------------------LKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI---------- 129 (745)
T ss_pred ceEEEEecCCCCchhh--------------------hhccccceeeeecCCcCc-eEecccccceEEecc----------
Confidence 9999999877654433 457899999999888887 999999999999987
Q ss_pred CCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCccccccc
Q 000268 432 PNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 511 (1757)
Q Consensus 432 ~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~ 511 (1757)
+.....+.+|+..|+++++.|. +.++||+.|.+|++|.-.
T Consensus 130 -~~l~~~l~gH~asVWAv~~l~e---------------------------~~~vTgsaDKtIklWk~~------------ 169 (745)
T KOG0301|consen 130 -GELVYSLQGHTASVWAVASLPE---------------------------NTYVTGSADKTIKLWKGG------------ 169 (745)
T ss_pred -hhhhcccCCcchheeeeeecCC---------------------------CcEEeccCcceeeeccCC------------
Confidence 4456679999999999999886 489999999999999653
Q ss_pred ccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEe
Q 000268 512 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVH 591 (1757)
Q Consensus 512 ~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafS 591 (1757)
.....+.+|...|+.+++-+++ .+++++.||.|++|++ +|+++..+.||+.-|+++...
T Consensus 170 -------------------~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~ 228 (745)
T KOG0301|consen 170 -------------------TLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMA 228 (745)
T ss_pred -------------------chhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEec
Confidence 3455678899999999998775 4778899999999999 899999999999999999966
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 000268 592 PFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 656 (1757)
Q Consensus 592 Pdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~t 656 (1757)
+ +..+++|+|.|++++||+.. .+.+.+......|+++.+-++|. |++|+.||.|+||....
T Consensus 229 ~-~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 229 L-SDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred C-CCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 6 66788999999999999985 88888886666899999988887 67788899999999764
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-20 Score=222.42 Aligned_cols=295 Identities=16% Similarity=0.185 Sum_probs=211.4
Q ss_pred CCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEE-EEEeCCceEEEEECCCCCceEEecCCCCceEEE
Q 000268 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV-ASASNDCIIRVWRLPDGLPISVLRGHTAAVTAI 333 (1757)
Q Consensus 255 G~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lL-ASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsL 333 (1757)
+..+++++.|+.|++||+.+++.+..+..+. .+.+++|+|+++.| ++++.++.|++||+.+++.+..+..+.. +..+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~ 78 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELF 78 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEE
Confidence 3578899999999999999999999888654 47789999999976 5667889999999999988877765544 5678
Q ss_pred EecCCCCceEEE-EEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeC
Q 000268 334 AFSPRPGSVYQL-LSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS 412 (1757)
Q Consensus 334 afSPdg~~~~~L-aSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~ 412 (1757)
+|+|+++ .+ ++++.++.|.+||+.++..+..+. ....+.+++|+|+|.+++++..
T Consensus 79 ~~~~~g~---~l~~~~~~~~~l~~~d~~~~~~~~~~~---------------------~~~~~~~~~~~~dg~~l~~~~~ 134 (300)
T TIGR03866 79 ALHPNGK---ILYIANEDDNLVTVIDIETRKVLAEIP---------------------VGVEPEGMAVSPDGKIVVNTSE 134 (300)
T ss_pred EECCCCC---EEEEEcCCCCeEEEEECCCCeEEeEee---------------------CCCCcceEEECCCCCEEEEEec
Confidence 9999986 45 455678999999998866544331 1223567999999999998887
Q ss_pred Cc-eEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcE-EEEcCC
Q 000268 413 DT-LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI-VTCSRD 490 (1757)
Q Consensus 413 DG-~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~L-vSgS~D 490 (1757)
++ .+.+||..++. .+..+. ....+..++|++++ ..| +++..+
T Consensus 135 ~~~~~~~~d~~~~~---------~~~~~~-~~~~~~~~~~s~dg--------------------------~~l~~~~~~~ 178 (300)
T TIGR03866 135 TTNMAHFIDTKTYE---------IVDNVL-VDQRPRFAEFTADG--------------------------KELWVSSEIG 178 (300)
T ss_pred CCCeEEEEeCCCCe---------EEEEEE-cCCCccEEEECCCC--------------------------CEEEEEcCCC
Confidence 65 56778885422 222221 22345678898886 455 455679
Q ss_pred CeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEE-ecCCeEEEEEC
Q 000268 491 GSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA-IMDCRICVWNA 569 (1757)
Q Consensus 491 GtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSG-s~DG~I~IWDl 569 (1757)
|.|.+||+.+++..... ..... . ..........++|+|+|++++++ +.++.|.+||+
T Consensus 179 ~~v~i~d~~~~~~~~~~-------~~~~~----------~-----~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~ 236 (300)
T TIGR03866 179 GTVSVIDVATRKVIKKI-------TFEIP----------G-----VHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDA 236 (300)
T ss_pred CEEEEEEcCcceeeeee-------eeccc----------c-----cccccCCccceEECCCCCEEEEEcCCCCeEEEEEC
Confidence 99999999874421110 00000 0 00001123468899999986553 45678999999
Q ss_pred CCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCcceEEEEEcC
Q 000268 570 ADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSP 635 (1757)
Q Consensus 570 ~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSP 635 (1757)
.+++.+..+. +...+.+++|+|++..++++++.+|.|+|||+.+++++..+..+ .....++|+|
T Consensus 237 ~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 237 KTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 9998877654 44578999999954444444467999999999999999999854 5568888876
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-21 Score=205.31 Aligned_cols=300 Identities=22% Similarity=0.361 Sum_probs=233.2
Q ss_pred cccccccccccCCccccccCCcchhhhccccc-cCc-----cccccceeEEEEccCCCCEEEEEECCCCCEEEEEcCCce
Q 000268 193 DQVRGLGLREIGGGFTRHHRAPSIRAACYAIA-KPS-----TMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRL 266 (1757)
Q Consensus 193 ~~V~~l~~r~~Gg~~~~~~~~~~l~s~~~~~a-~~~-----~~~~~~k~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGt 266 (1757)
..|+.+.|-+.|+.++...+...++...|... .+. ..+...-..++-+.|.+.|+|++|||+|.+||||+.|.+
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ 112 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKT 112 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCce
Confidence 45677888888887777666666655555322 121 111223345666789999999999999999999999999
Q ss_pred EEEEecCCCeEE-----EEEecCCCCeEEEEEcCC----CCEEEEEeC-CceEEEEECCCCCceEEecCCCCceEEEE-e
Q 000268 267 VKIWSMETAYCL-----ASCRGHEGDITDLAVSSN----NALVASASN-DCIIRVWRLPDGLPISVLRGHTAAVTAIA-F 335 (1757)
Q Consensus 267 IkIWDl~tg~~l-----~tL~gH~~~VtsLafSPD----g~lLASgS~-DGtIrVWDl~tg~~l~~l~gH~~~VtsLa-f 335 (1757)
|++.-.....+. ..+.-|.+.|..++|-.+ +.+|++++. |..|.+-|..+|+....+.+|++-|.++- |
T Consensus 113 ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalysw 192 (350)
T KOG0641|consen 113 IKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSW 192 (350)
T ss_pred EEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEe
Confidence 999866433222 346779999999999753 457777654 78888899999999999999999998774 4
Q ss_pred cCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCce
Q 000268 336 SPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTL 415 (1757)
Q Consensus 336 SPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~ 415 (1757)
+ +. .+++|+.|.+|++||++-..++..+...... ..-....|.++++.|.|++|++|..|..
T Consensus 193 n--~~---m~~sgsqdktirfwdlrv~~~v~~l~~~~~~-------------~glessavaav~vdpsgrll~sg~~dss 254 (350)
T KOG0641|consen 193 N--GA---MFASGSQDKTIRFWDLRVNSCVNTLDNDFHD-------------GGLESSAVAAVAVDPSGRLLASGHADSS 254 (350)
T ss_pred c--Cc---EEEccCCCceEEEEeeeccceeeeccCcccC-------------CCcccceeEEEEECCCcceeeeccCCCc
Confidence 3 33 8999999999999999988777665322111 1123467999999999999999999999
Q ss_pred EEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEE
Q 000268 416 ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAII 495 (1757)
Q Consensus 416 IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~I 495 (1757)
..+||++. ++.++.+..|...|.++.|+|.. .++++|+.|..|++
T Consensus 255 c~lydirg---------~r~iq~f~phsadir~vrfsp~a--------------------------~yllt~syd~~ikl 299 (350)
T KOG0641|consen 255 CMLYDIRG---------GRMIQRFHPHSADIRCVRFSPGA--------------------------HYLLTCSYDMKIKL 299 (350)
T ss_pred eEEEEeeC---------CceeeeeCCCccceeEEEeCCCc--------------------------eEEEEecccceEEE
Confidence 99999976 55788899999999999999976 58999999999999
Q ss_pred EeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECC
Q 000268 496 WIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAA 570 (1757)
Q Consensus 496 WDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~ 570 (1757)
-|+...- ....++..+..|...+..+.|.|..--+++.+.|.++.+|-+.
T Consensus 300 tdlqgdl-------------------------a~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 300 TDLQGDL-------------------------AHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eecccch-------------------------hhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 9887411 1123345566788888899999999999999999999999763
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-22 Score=239.70 Aligned_cols=283 Identities=17% Similarity=0.274 Sum_probs=231.8
Q ss_pred CCCCEEEEEeCCceEEEEECCCCC------ceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCcccee
Q 000268 295 SNNALVASASNDCIIRVWRLPDGL------PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRI 368 (1757)
Q Consensus 295 PDg~lLASgS~DGtIrVWDl~tg~------~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i 368 (1757)
|.+++|++|+.||.|++|++.... .+..+..|...|..++.+.+++ .|++++.|-+|++|+...+..
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~---tlIS~SsDtTVK~W~~~~~~~---- 107 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK---TLISASSDTTVKVWNAHKDNT---- 107 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC---ceEEecCCceEEEeecccCcc----
Confidence 467789999999999999986432 4778889999999999999987 899999999999999876631
Q ss_pred ecCCCCccccCCCCCCCCCCCCCCcceEEEEE-CCCCCEEEEeeCCceEEEecCCCCCC--CCCCCCCcceeeec-CCCC
Q 000268 369 YIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF-NANGTVFVTGSSDTLARVWNACKPNT--DDSDQPNHEIDVLS-GHEN 444 (1757)
Q Consensus 369 ~l~~~~~~~~g~~~~~~~~~~~~~~~V~slaf-SpdG~~LasGs~DG~IrVWDl~t~~~--~~s~~~~~~i~~l~-gH~~ 444 (1757)
......+.|...|.|+++ .++..++|+||-|+.|.|||+.++.. ....... ....+. |+..
T Consensus 108 --------------~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~-t~~sl~sG~k~ 172 (735)
T KOG0308|consen 108 --------------FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNV-TVNSLGSGPKD 172 (735)
T ss_pred --------------hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccc-ccccCCCCCcc
Confidence 111223568999999999 77889999999999999999987632 1112211 122233 8888
Q ss_pred CceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCC
Q 000268 445 DVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMP 524 (1757)
Q Consensus 445 ~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~ 524 (1757)
.|.+++.++.+ ..|++|+..+.|++||.++.+
T Consensus 173 siYSLA~N~t~--------------------------t~ivsGgtek~lr~wDprt~~---------------------- 204 (735)
T KOG0308|consen 173 SIYSLAMNQTG--------------------------TIIVSGGTEKDLRLWDPRTCK---------------------- 204 (735)
T ss_pred ceeeeecCCcc--------------------------eEEEecCcccceEEecccccc----------------------
Confidence 99999998876 589999999999999999743
Q ss_pred CCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCC
Q 000268 525 PQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYD 604 (1757)
Q Consensus 525 ~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~D 604 (1757)
.+..+.+|...|..+..+.||+.+++++.||+|++||+...++++++..|...|+++..+| +=..+.+|+.|
T Consensus 205 -------kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~-sf~~vYsG~rd 276 (735)
T KOG0308|consen 205 -------KIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP-SFTHVYSGGRD 276 (735)
T ss_pred -------ceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC-CcceEEecCCC
Confidence 4456679999999999999999999999999999999999999999999999999999998 66788999999
Q ss_pred CcEEEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 000268 605 GKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 655 (1757)
Q Consensus 605 G~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~ 655 (1757)
|.|..=|+.+......+-....+|..+..+...+.+-+++.|+.|.-|...
T Consensus 277 ~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 277 GNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred CcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence 999999999854333333466788888887666666777888999999764
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-20 Score=226.07 Aligned_cols=399 Identities=12% Similarity=0.165 Sum_probs=274.0
Q ss_pred cchhhhccccccCccccccceeEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEE--EecCCCCeEEE
Q 000268 214 PSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLAS--CRGHEGDITDL 291 (1757)
Q Consensus 214 ~~l~s~~~~~a~~~~~~~~~k~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~t--L~gH~~~VtsL 291 (1757)
..|+++..++.+..|++.+++.+..+....++|++++.+|.+..++.|++||.+...+...+..... |.-..+.|.++
T Consensus 81 ~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLsl 160 (691)
T KOG2048|consen 81 GRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSL 160 (691)
T ss_pred CeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEE
Confidence 4567777888899999999999999999999999999999999999999999888889888876554 33456899999
Q ss_pred EEcCCCCEEEEEeCCceEEEEECCCCCceEEe-------c-CCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCC
Q 000268 292 AVSSNNALVASASNDCIIRVWRLPDGLPISVL-------R-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ 363 (1757)
Q Consensus 292 afSPDg~lLASgS~DGtIrVWDl~tg~~l~~l-------~-gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~ 363 (1757)
+|+|++..||+|+.||.|++||+.++..+... . +...-|+++.|..++ .|++|..-|+|.+||...+.
T Consensus 161 sw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~----tI~sgDS~G~V~FWd~~~gT 236 (691)
T KOG2048|consen 161 SWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS----TIASGDSAGTVTFWDSIFGT 236 (691)
T ss_pred EecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC----cEEEecCCceEEEEcccCcc
Confidence 99999999999999999999999999776622 1 234568999999876 79999999999999999988
Q ss_pred ccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCC
Q 000268 364 FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE 443 (1757)
Q Consensus 364 ~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~ 443 (1757)
+++.+. .|...|.|++..+++..+++++.|+.|..|...+... .+........|.
T Consensus 237 LiqS~~--------------------~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~-----~wv~~~~r~~h~ 291 (691)
T KOG2048|consen 237 LIQSHS--------------------CHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS-----EWVINSRRDLHA 291 (691)
T ss_pred hhhhhh--------------------hhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc-----ceeeeccccCCc
Confidence 766553 4788899999999999999999999999998765322 133444567889
Q ss_pred CCceEEEEccCccccccc---cccCCCCC---CCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCccccccccccccc
Q 000268 444 NDVNYVQFSGCAVASRFS---LADSSKED---STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLK 517 (1757)
Q Consensus 444 ~~V~sLafSpdg~~s~~~---~~~~~~~~---~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~ 517 (1757)
..|.+++..++.+.+... +.-..... ..............++++..+..+.+|...... .|.. .
T Consensus 292 hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~------lwrl----G 361 (691)
T KOG2048|consen 292 HDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVD------LWRL----G 361 (691)
T ss_pred ccceeeeeecceEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEecccccc------ceec----c
Confidence 999999988653211110 00000000 000001111111222222233333334222100 0000 0
Q ss_pred CCCCCCCC-CCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCC-------------------------
Q 000268 518 VPPPPMPP-QPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD------------------------- 571 (1757)
Q Consensus 518 ~~~~~~~~-~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~t------------------------- 571 (1757)
..... ........+........|.+.+.||+|++|+.+.- ..++||.+..
T Consensus 362 ---S~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ft 437 (691)
T KOG2048|consen 362 ---SVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFT 437 (691)
T ss_pred ---CcccccccChhhheeeecCCccceeeeccCCCCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEE
Confidence 00000 00111122333445566889999999999988762 1233332211
Q ss_pred -----------------------C--ceEEEE--eCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeec
Q 000268 572 -----------------------G--SLVHSL--TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS 624 (1757)
Q Consensus 572 -----------------------g--kll~~L--~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~ 624 (1757)
+ +.+..+ ++....|..|+.|| ++.++|+.+.+|.|.+|++.+++.-.....-
T Consensus 438 id~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ss-dG~yiaa~~t~g~I~v~nl~~~~~~~l~~rl 516 (691)
T KOG2048|consen 438 IDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSS-DGNYIAAISTRGQIFVYNLETLESHLLKVRL 516 (691)
T ss_pred ecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcC-CCCEEEEEeccceEEEEEcccceeecchhcc
Confidence 0 111111 12345688899999 6677778889999999999888766655445
Q ss_pred CcceEEEEEcC-CCCEEEEEeCCCeEEEEECCC
Q 000268 625 RFRLVDGKFSP-DGASIILSDDVGQLYILNTGQ 656 (1757)
Q Consensus 625 ~~~VtslafSP-DGk~LAsgs~DG~I~IWdl~t 656 (1757)
...|+.++|+| +-..|+++..+++|+-||+..
T Consensus 517 n~~vTa~~~~~~~~~~lvvats~nQv~efdi~~ 549 (691)
T KOG2048|consen 517 NIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEA 549 (691)
T ss_pred CcceeeeeccccccCcEEEEecCCeEEEEecch
Confidence 67899999995 677899999999999999843
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.6e-22 Score=219.47 Aligned_cols=324 Identities=20% Similarity=0.274 Sum_probs=252.5
Q ss_pred EEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecC
Q 000268 258 VITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSP 337 (1757)
Q Consensus 258 LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSP 337 (1757)
|++.-.+++++ .++++.+.||...|+.++.......+.+++.|.+.+||.+++|.++..+.||.+.|++|+|++
T Consensus 127 ivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~ 200 (481)
T KOG0300|consen 127 IVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHN 200 (481)
T ss_pred heeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEecc
Confidence 44444555533 345677889999999999988777999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCc-------------------cccC-CCCCCCCCCCCCCcceEE
Q 000268 338 RPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSD-------------------AVAG-RNMAPSSSAGPQSHQIFC 397 (1757)
Q Consensus 338 dg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~-------------------~~~g-~~~~~~~~~~~~~~~V~s 397 (1757)
.+. ++++++.|++-.||...-.-.++.-..+.... ...+ ....+...+.+|...|.+
T Consensus 201 s~~---L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 201 SGL---LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred ccc---eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 886 89999999999999743211111100000000 0000 111233455678899999
Q ss_pred EEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCccccc
Q 000268 398 CAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNS 477 (1757)
Q Consensus 398 lafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~ 477 (1757)
+.|...|+.+++++-|.+..+||+.+ +..+..+.||....+.++-.|..
T Consensus 278 ~dWL~gg~Q~vTaSWDRTAnlwDVEt---------ge~v~~LtGHd~ELtHcstHptQ---------------------- 326 (481)
T KOG0300|consen 278 CDWLAGGQQMVTASWDRTANLWDVET---------GEVVNILTGHDSELTHCSTHPTQ---------------------- 326 (481)
T ss_pred hhhhcCcceeeeeeccccceeeeecc---------CceeccccCcchhccccccCCcc----------------------
Confidence 99999999999999999999999977 45678899999999888887764
Q ss_pred ccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEE
Q 000268 478 WFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA 557 (1757)
Q Consensus 478 ~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaS 557 (1757)
.++++.+.|.+.++||++. .......+.+|...|+++.|..+. .+++
T Consensus 327 ----rLVvTsSrDtTFRLWDFRe----------------------------aI~sV~VFQGHtdtVTS~vF~~dd-~vVS 373 (481)
T KOG0300|consen 327 ----RLVVTSSRDTTFRLWDFRE----------------------------AIQSVAVFQGHTDTVTSVVFNTDD-RVVS 373 (481)
T ss_pred ----eEEEEeccCceeEeccchh----------------------------hcceeeeecccccceeEEEEecCC-ceee
Confidence 6788999999999999983 123345678899999999998776 5889
Q ss_pred EecCCeEEEEECCCCc-eEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-----ecCcceEEE
Q 000268 558 AIMDCRICVWNAADGS-LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE-----ISRFRLVDG 631 (1757)
Q Consensus 558 Gs~DG~I~IWDl~tgk-ll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~-----~~~~~Vtsl 631 (1757)
|+.|.+|+|||+++.. ++.++. ...+++.++.+. +..+++.--....|+|||+ +|..+..+. +|..-|+++
T Consensus 374 gSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~-g~~iIAiPhDNRqvRlfDl-nG~RlaRlPrtsRqgHrRMV~c~ 450 (481)
T KOG0300|consen 374 GSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSK-GHPIIAIPHDNRQVRLFDL-NGNRLARLPRTSRQGHRRMVTCC 450 (481)
T ss_pred cCCCceEEEeeeccccCcceeee-cCCccceeEeec-CCceEEeccCCceEEEEec-CCCccccCCcccccccceeeeee
Confidence 9999999999998864 566766 356688999988 7778887777889999999 555554443 566678999
Q ss_pred EEcCCC--CEEEEEeCCCeEEEEECCCC
Q 000268 632 KFSPDG--ASIILSDDVGQLYILNTGQG 657 (1757)
Q Consensus 632 afSPDG--k~LAsgs~DG~I~IWdl~tG 657 (1757)
+|..+. .-|++++.|..+.-|.+...
T Consensus 451 AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 451 AWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eccccCcccccccccccceeeeeEeccc
Confidence 998764 46888999999999998653
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-21 Score=225.72 Aligned_cols=275 Identities=18% Similarity=0.256 Sum_probs=224.8
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceE----E-------------e-cCCCCceEEEEecCCC
Q 000268 278 LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS----V-------------L-RGHTAAVTAIAFSPRP 339 (1757)
Q Consensus 278 l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~----~-------------l-~gH~~~VtsLafSPdg 339 (1757)
...+..|.-.|++|+++|+++++++++.+|+|.-|++.+|+... . - ++|...|.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 34456799999999999999999999999999999998876331 0 1 2788899999999999
Q ss_pred CceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEe
Q 000268 340 GSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVW 419 (1757)
Q Consensus 340 ~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVW 419 (1757)
+ +|++|+.|..|.||+..+.+.+..+ .+|.+.|.+++|-.....+++++.|..|++|
T Consensus 215 k---ylatgg~d~~v~Iw~~~t~ehv~~~--------------------~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw 271 (479)
T KOG0299|consen 215 K---YLATGGRDRHVQIWDCDTLEHVKVF--------------------KGHRGAVSSLAFRKGTSELYSASADRSVKVW 271 (479)
T ss_pred c---EEEecCCCceEEEecCcccchhhcc--------------------cccccceeeeeeecCccceeeeecCCceEEE
Confidence 8 9999999999999999988765553 4688999999999888899999999999999
Q ss_pred cCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCC
Q 000268 420 NACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPR 499 (1757)
Q Consensus 420 Dl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~ 499 (1757)
++.. ...+.++-+|++.|..|...... ..+-+|+.|+++++|++.
T Consensus 272 ~~~~---------~s~vetlyGHqd~v~~IdaL~re--------------------------R~vtVGgrDrT~rlwKi~ 316 (479)
T KOG0299|consen 272 SIDQ---------LSYVETLYGHQDGVLGIDALSRE--------------------------RCVTVGGRDRTVRLWKIP 316 (479)
T ss_pred ehhH---------hHHHHHHhCCccceeeechhccc--------------------------ceEEeccccceeEEEecc
Confidence 9953 45677889999999999776542 234445699999999985
Q ss_pred CCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEe
Q 000268 500 SRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT 579 (1757)
Q Consensus 500 t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~ 579 (1757)
.. ....+.++...+-|++|-. ...+++|+.+|.|.+|++...+++.+..
T Consensus 317 ee------------------------------sqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 317 EE------------------------------SQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSR 365 (479)
T ss_pred cc------------------------------ceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEee
Confidence 31 1223455677889999864 4578999999999999999988887653
Q ss_pred -CC-----------CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC----ceEEEEeecCcceEEEEEcCCCCEEEEE
Q 000268 580 -GH-----------TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG----IPIRIYEISRFRLVDGKFSPDGASIILS 643 (1757)
Q Consensus 580 -gH-----------~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg----~~l~~l~~~~~~VtslafSPDGk~LAsg 643 (1757)
.| ...|++|+..| +..++++|+.+|.|++|-+.+| .++..+. -.+-|.+++|+++|++|++|
T Consensus 366 ~AHgv~~~~~~~~~~~Witsla~i~-~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 366 LAHGVIPELDPVNGNFWITSLAVIP-GSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred ccccccCCccccccccceeeeEecc-cCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEe
Confidence 22 22789999999 8899999999999999999988 3444443 45678999999999988876
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.6e-21 Score=239.95 Aligned_cols=268 Identities=16% Similarity=0.186 Sum_probs=200.3
Q ss_pred CceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECC-CCCE
Q 000268 328 AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NGTV 406 (1757)
Q Consensus 328 ~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSp-dG~~ 406 (1757)
..|....+++++. .+++++.+.....|+...+..+ +.+.. .|+.........+|.+.|.+++|+| ++.+
T Consensus 21 ~~i~~~~~~~d~~---~~~~~n~~~~a~~w~~~gg~~v--~~~~~-----~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~ 90 (493)
T PTZ00421 21 LNVTPSTALWDCS---NTIACNDRFIAVPWQQLGSTAV--LKHTD-----YGKLASNPPILLGQEGPIIDVAFNPFDPQK 90 (493)
T ss_pred eccccccccCCCC---CcEeECCceEEEEEecCCceEE--eeccc-----cccCCCCCceEeCCCCCEEEEEEcCCCCCE
Confidence 4455666677755 5788888888888987655321 11111 1111111233567899999999999 8899
Q ss_pred EEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEE
Q 000268 407 FVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVT 486 (1757)
Q Consensus 407 LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvS 486 (1757)
||+|+.|++|+|||+.+.... ......+..+.+|...|.+++|+|.+ .+.|++
T Consensus 91 LaSgS~DgtIkIWdi~~~~~~--~~~~~~l~~L~gH~~~V~~l~f~P~~-------------------------~~iLaS 143 (493)
T PTZ00421 91 LFTASEDGTIMGWGIPEEGLT--QNISDPIVHLQGHTKKVGIVSFHPSA-------------------------MNVLAS 143 (493)
T ss_pred EEEEeCCCEEEEEecCCCccc--cccCcceEEecCCCCcEEEEEeCcCC-------------------------CCEEEE
Confidence 999999999999999653211 11224567789999999999999874 258999
Q ss_pred EcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEE
Q 000268 487 CSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICV 566 (1757)
Q Consensus 487 gS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~I 566 (1757)
++.|++|+|||+.++. ....+..|...|.+++|+|+|.+|++|+.|+.|+|
T Consensus 144 gs~DgtVrIWDl~tg~-----------------------------~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrI 194 (493)
T PTZ00421 144 AGADMVVNVWDVERGK-----------------------------AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNI 194 (493)
T ss_pred EeCCCEEEEEECCCCe-----------------------------EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEE
Confidence 9999999999998532 23345567888999999999999999999999999
Q ss_pred EECCCCceEEEEeCCCCC-eEEEEEecCCCcEEEEE---eCCCcEEEEeCCCCc-eEEEEeecC-cceEEEEEcCCCCEE
Q 000268 567 WNAADGSLVHSLTGHTES-TYVLDVHPFNPRIAMSA---GYDGKTIVWDIWEGI-PIRIYEISR-FRLVDGKFSPDGASI 640 (1757)
Q Consensus 567 WDl~tgkll~~L~gH~~~-VtsLafSPdd~~lLaSg---s~DG~IrIWDl~tg~-~l~~l~~~~-~~VtslafSPDGk~L 640 (1757)
||+.+++.+..+.+|.+. +..+.|++.++.++.+| +.|+.|+|||+.+.. ++.....+. ..+....|++|+++|
T Consensus 195 wD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L 274 (493)
T PTZ00421 195 IDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLL 274 (493)
T ss_pred EECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEE
Confidence 999999999999999875 44678888555555444 248999999998754 444443233 345567899999999
Q ss_pred EEEe-CCCeEEEEECCCCcccc
Q 000268 641 ILSD-DVGQLYILNTGQGESQK 661 (1757)
Q Consensus 641 Asgs-~DG~I~IWdl~tGe~~~ 661 (1757)
++++ .||.|++|++..++.+.
T Consensus 275 ~lggkgDg~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 275 YIGSKGEGNIRCFELMNERLTF 296 (493)
T ss_pred EEEEeCCCeEEEEEeeCCceEE
Confidence 9887 59999999998876543
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-21 Score=227.57 Aligned_cols=299 Identities=20% Similarity=0.302 Sum_probs=235.7
Q ss_pred EcCC-ceEEEEecCCCeEEEEEecC-CCCeEEEEEcCCCCEEEEEe-CCceEEEEECCCCCceEEecCCCCceEEEEecC
Q 000268 261 GSDD-RLVKIWSMETAYCLASCRGH-EGDITDLAVSSNNALVASAS-NDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSP 337 (1757)
Q Consensus 261 GS~D-GtIkIWDl~tg~~l~tL~gH-~~~VtsLafSPDg~lLASgS-~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSP 337 (1757)
++.| ..+.+||+.||..+.++++. ...-.++..- .+.+++++. ....|.+|.+..........--.++|.+++-+|
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n 91 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSN 91 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCC
Confidence 3444 56999999999999998865 2222222222 234565554 456899999876554443333568899999999
Q ss_pred CCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEE
Q 000268 338 RPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLAR 417 (1757)
Q Consensus 338 dg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~Ir 417 (1757)
.|. +|+.|+..|.|.+|.+.+|.++..+ ..|-..|+|+.|+-||.+|++|+.||.|.
T Consensus 92 ~G~---~l~ag~i~g~lYlWelssG~LL~v~--------------------~aHYQ~ITcL~fs~dgs~iiTgskDg~V~ 148 (476)
T KOG0646|consen 92 LGY---FLLAGTISGNLYLWELSSGILLNVL--------------------SAHYQSITCLKFSDDGSHIITGSKDGAVL 148 (476)
T ss_pred Cce---EEEeecccCcEEEEEeccccHHHHH--------------------HhhccceeEEEEeCCCcEEEecCCCccEE
Confidence 985 7777779999999999999987665 24778899999999999999999999999
Q ss_pred EecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEe
Q 000268 418 VWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWI 497 (1757)
Q Consensus 418 VWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWD 497 (1757)
+|.+..--.........++..+..|.-.|+.+...+.+. ..+|+|+|.|.++++||
T Consensus 149 vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~------------------------~~rl~TaS~D~t~k~wd 204 (476)
T KOG0646|consen 149 VWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGT------------------------NARLYTASEDRTIKLWD 204 (476)
T ss_pred EEEEEeecccccCCCccceeeeccCcceeEEEEecCCCc------------------------cceEEEecCCceEEEEE
Confidence 999854333223335667889999999999999886541 36899999999999999
Q ss_pred CCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCC------
Q 000268 498 PRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD------ 571 (1757)
Q Consensus 498 l~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~t------ 571 (1757)
+..+. +......+..+.+++.+|-++.+++|+.+|.|.+.++..
T Consensus 205 lS~g~------------------------------LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~ 254 (476)
T KOG0646|consen 205 LSLGV------------------------------LLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSA 254 (476)
T ss_pred eccce------------------------------eeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccc
Confidence 98643 122233456789999999999999999999999988743
Q ss_pred ----------CceEEEEeCCCC--CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCcceEEEEEcCCCC
Q 000268 572 ----------GSLVHSLTGHTE--STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGA 638 (1757)
Q Consensus 572 ----------gkll~~L~gH~~--~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk 638 (1757)
+..+..+.||.+ .|+|++++- ++.+|++|+.||.|+|||+.+.++++++....++|+.+.+.|--+
T Consensus 255 ~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 255 GVNQKGRHEENTQINVLVGHENESAITCLAIST-DGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLER 332 (476)
T ss_pred cccccccccccceeeeeccccCCcceeEEEEec-CccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccc
Confidence 234667889998 999999998 889999999999999999999999999987788999998876533
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.8e-20 Score=196.34 Aligned_cols=294 Identities=15% Similarity=0.218 Sum_probs=225.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCceEEEEECC------CC-----Cc----eEEecCCCCceEEEEecCCCCceEEEEEE
Q 000268 284 HEGDITDLAVSSNNALVASASNDCIIRVWRLP------DG-----LP----ISVLRGHTAAVTAIAFSPRPGSVYQLLSS 348 (1757)
Q Consensus 284 H~~~VtsLafSPDg~lLASgS~DGtIrVWDl~------tg-----~~----l~~l~gH~~~VtsLafSPdg~~~~~LaSg 348 (1757)
.+..|.+++|.|.|.+.|+|+...+++|.-.. .+ .+ .+.-+.|.+.|+|.+|+|.|. +|++|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge---liatg 107 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE---LIATG 107 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC---eEEec
Confidence 56789999999999999999999999987442 11 11 122346889999999999998 99999
Q ss_pred eCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECC----CCCEEEEeeC-CceEEEecCCC
Q 000268 349 SDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA----NGTVFVTGSS-DTLARVWNACK 423 (1757)
Q Consensus 349 s~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSp----dG~~LasGs~-DG~IrVWDl~t 423 (1757)
+.|.+|++.-.+...+.. ......+..|.+.|..++|-. .|.+|++++. |..|++-|..+
T Consensus 108 sndk~ik~l~fn~dt~~~---------------~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~ 172 (350)
T KOG0641|consen 108 SNDKTIKVLPFNADTCNA---------------TGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR 172 (350)
T ss_pred CCCceEEEEecccccccc---------------cCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC
Confidence 999999997665433211 111223345888999999964 3456666553 55666666643
Q ss_pred CCCCCCCCCCcceeeecCCCCCceEEE-EccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCC
Q 000268 424 PNTDDSDQPNHEIDVLSGHENDVNYVQ-FSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR 502 (1757)
Q Consensus 424 ~~~~~s~~~~~~i~~l~gH~~~V~sLa-fSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k 502 (1757)
+..+..+.+|++-|.++- |+ +-++++|+.|.+|++||++-..
T Consensus 173 ---------g~~~~a~sghtghilalyswn----------------------------~~m~~sgsqdktirfwdlrv~~ 215 (350)
T KOG0641|consen 173 ---------GQGFHALSGHTGHILALYSWN----------------------------GAMFASGSQDKTIRFWDLRVNS 215 (350)
T ss_pred ---------CCcceeecCCcccEEEEEEec----------------------------CcEEEccCCCceEEEEeeeccc
Confidence 556788999999988763 33 2489999999999999998432
Q ss_pred CCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCC
Q 000268 503 SHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHT 582 (1757)
Q Consensus 503 ~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~ 582 (1757)
+...... ....--.....|.+++..|.|++|++|-.|....+||++.|+.++.+..|.
T Consensus 216 ~v~~l~~----------------------~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phs 273 (350)
T KOG0641|consen 216 CVNTLDN----------------------DFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHS 273 (350)
T ss_pred eeeeccC----------------------cccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCc
Confidence 1111000 000001123569999999999999999999999999999999999999999
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC----ceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 000268 583 ESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG----IPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 655 (1757)
Q Consensus 583 ~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg----~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~ 655 (1757)
..|.|+.|+| +..++++++.|..|++-|+... -++.....|...+..+.|.|..-.+++.+.|.++.+|-+.
T Consensus 274 adir~vrfsp-~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 274 ADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred cceeEEEeCC-CceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 9999999999 8899999999999999998532 2344455677888899999999999999999999999763
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-21 Score=211.76 Aligned_cols=260 Identities=23% Similarity=0.362 Sum_probs=208.1
Q ss_pred EEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCC---eEEEEEecCCCCeEEEEEcC--CCCEEEEEeCCceEEEE
Q 000268 238 RVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA---YCLASCRGHEGDITDLAVSS--NNALVASASNDCIIRVW 312 (1757)
Q Consensus 238 tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg---~~l~tL~gH~~~VtsLafSP--Dg~lLASgS~DGtIrVW 312 (1757)
.-.+|...|..+..+--|++|||++.|++|+|+.+... +++.+|.||.++|+.++|.. .|.+||+++.||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 34679999999999999999999999999999999653 57889999999999999987 89999999999999999
Q ss_pred ECCCCC--ceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCC
Q 000268 313 RLPDGL--PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGP 390 (1757)
Q Consensus 313 Dl~tg~--~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~ 390 (1757)
.-++|+ .......|...|++|+|.|.+-+ ..|++++.||.|.|.+.+....- ........
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheyg-l~LacasSDG~vsvl~~~~~g~w-----------------~t~ki~~a 147 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYG-LLLACASSDGKVSVLTYDSSGGW-----------------TTSKIVFA 147 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccc-eEEEEeeCCCcEEEEEEcCCCCc-----------------cchhhhhc
Confidence 988874 34556789999999999998744 48999999999999988754111 01112345
Q ss_pred CCcceEEEEECCC---C-----------CEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcc
Q 000268 391 QSHQIFCCAFNAN---G-----------TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAV 456 (1757)
Q Consensus 391 ~~~~V~slafSpd---G-----------~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~ 456 (1757)
|.-.|++++|.|. | +.|++|+.|..|+||+...+ ....-..+.+|.+.|+.++|.|.--
T Consensus 148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~-------~w~~e~~l~~H~dwVRDVAwaP~~g 220 (299)
T KOG1332|consen 148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD-------SWKLERTLEGHKDWVRDVAWAPSVG 220 (299)
T ss_pred cccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc-------chhhhhhhhhcchhhhhhhhccccC
Confidence 7778999999885 4 56999999999999998653 2344456899999999999998741
Q ss_pred ccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceee
Q 000268 457 ASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI 536 (1757)
Q Consensus 457 ~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l 536 (1757)
+....|++++.||++.||.... ....|... .+
T Consensus 221 ----------------------l~~s~iAS~SqDg~viIwt~~~-----e~e~wk~t---------------------ll 252 (299)
T KOG1332|consen 221 ----------------------LPKSTIASCSQDGTVIIWTKDE-----EYEPWKKT---------------------LL 252 (299)
T ss_pred ----------------------CCceeeEEecCCCcEEEEEecC-----ccCccccc---------------------cc
Confidence 1135899999999999997652 11222211 12
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECC
Q 000268 537 LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAA 570 (1757)
Q Consensus 537 ~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~ 570 (1757)
......+..+.||..|..|++++.|+.|.+|--.
T Consensus 253 ~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 253 EEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 2245678999999999999999999999999753
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.8e-21 Score=212.59 Aligned_cols=270 Identities=17% Similarity=0.270 Sum_probs=217.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCC
Q 000268 284 HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ 363 (1757)
Q Consensus 284 H~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~ 363 (1757)
....|.+|.|+|.+..|++++.||++++|++........+. |..++.+++|.++. .+++|+.||.|+.+|+.++.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~----~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADES----TIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCCc----eEEEeccCceEEEEEecCCc
Confidence 46789999999999999999999999999998876555555 89999999999975 69999999999999999876
Q ss_pred ccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCC
Q 000268 364 FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE 443 (1757)
Q Consensus 364 ~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~ 443 (1757)
... ...|...|.||.+++....+++|+-|++|++||.+..... ..+ ...
T Consensus 87 ~~~---------------------igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~---------~~~-d~~ 135 (323)
T KOG1036|consen 87 EDQ---------------------IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVV---------GTF-DQG 135 (323)
T ss_pred cee---------------------eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccc---------ccc-ccC
Confidence 322 2358888999999998889999999999999999752211 111 122
Q ss_pred CCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCC
Q 000268 444 NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPM 523 (1757)
Q Consensus 444 ~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~ 523 (1757)
..|.++.... +.|++|+.|..+.+||+++....
T Consensus 136 kkVy~~~v~g----------------------------~~LvVg~~~r~v~iyDLRn~~~~------------------- 168 (323)
T KOG1036|consen 136 KKVYCMDVSG----------------------------NRLVVGTSDRKVLIYDLRNLDEP------------------- 168 (323)
T ss_pred ceEEEEeccC----------------------------CEEEEeecCceEEEEEcccccch-------------------
Confidence 3677776653 68999999999999999963310
Q ss_pred CCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCC----ceEEEEeCCCC---------CeEEEEE
Q 000268 524 PPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG----SLVHSLTGHTE---------STYVLDV 590 (1757)
Q Consensus 524 ~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tg----kll~~L~gH~~---------~VtsLaf 590 (1757)
...+.......++||++-|++.-+++++-||+|.+=.+... +.-..|+.|.. +|++|+|
T Consensus 169 --------~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~F 240 (323)
T KOG1036|consen 169 --------FQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAF 240 (323)
T ss_pred --------hhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEe
Confidence 01122234456899999999999999999999998776654 33446666642 6899999
Q ss_pred ecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeC
Q 000268 591 HPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDD 645 (1757)
Q Consensus 591 SPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~ 645 (1757)
||- ...|||||.||.|.+||+.+.+.+..+......|.+++|+.||..||+++.
T Consensus 241 hp~-~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 241 HPI-HGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ccc-cceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 994 667899999999999999999999999877778999999999999999865
|
|
| >PF06507 Auxin_resp: Auxin response factor; InterPro: IPR010525 This pattern represents a conserved region of auxin-responsive transcription factors | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.7e-23 Score=192.23 Aligned_cols=76 Identities=18% Similarity=0.491 Sum_probs=72.3
Q ss_pred CCceEEEEcCCCCCCCceEeehhhHHHHhcCCCccCceeEEeecCCCCCCCceEEEEEEEecCCCC-CCCCCCCceeE
Q 000268 1534 SNMTFRLTLPEVTGFPDFLVERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSS-EFPDSPWERYT 1610 (1757)
Q Consensus 1534 ~~~~F~v~y~~~~~~~dFiV~~~~y~~a~~~~w~~g~rf~m~fe~e~~~~~~~~~GtI~~~~~~~p-~~p~S~W~~l~ 1610 (1757)
++..|.|+|+||++.+||||++++|++|++.+|++||||||.||+||. .+++|+|||++|++.|| .||+|+||||+
T Consensus 7 ~~~~F~V~Y~PRa~~sEFVV~~~k~~~al~~~~~~GmRfkM~fE~eds-~~~~~~GtI~~v~~~dp~~w~~S~WR~Lq 83 (83)
T PF06507_consen 7 TGSPFEVFYYPRASPSEFVVPASKYDKALNHPWSVGMRFKMRFETEDS-SERRWQGTIVGVSDLDPIRWPGSKWRMLQ 83 (83)
T ss_pred cCCeEEEEECCCCCCcceEEEHHHHHHHhcCCCCCCcEEEEEeccCCC-ccceeeeEEeEeeccCCCCCCCCCcccCc
Confidence 467899999999999999999999999999999999999999999998 67888999999999999 59999999996
|
The plant hormone auxin (indole-3-acetic acid) can regulate the gene expression of several families, including Aux/IAA, GH3 and SAUR families. Two related families of proteins, Aux/IAA proteins (IPR003311 from INTERPRO) and the auxin response factors (ARF), are key regulators of auxin-modulated gene expression []. There are multiple ARF proteins, some of which activate, while others repress transcription. ARF proteins bind to auxin-responsive cis-acting promoter elements (AuxREs) using an N-terminal DNA-binding domain. It is thought that Aux/IAA proteins activate transcription by modifying ARF activity through the C-terminal protein-protein interaction domains (IPR011525 from INTERPRO) found in both Aux/IAA and ARF proteins. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0009725 response to hormone stimulus, 0005634 nucleus |
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-20 Score=208.17 Aligned_cols=247 Identities=23% Similarity=0.324 Sum_probs=195.6
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEE
Q 000268 278 LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIW 357 (1757)
Q Consensus 278 l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIW 357 (1757)
+..+..|.+.|+++|++ +.++|+|+.|-+|+|||+.+...+..+-.|.+.|+++.|.+.-.. ..|++|+.||.|.+|
T Consensus 36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~-shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSK-SHLLSGSDDGHIIIW 112 (362)
T ss_pred cccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcch-hheeeecCCCcEEEE
Confidence 55677899999999996 889999999999999999999999999999999999999987532 279999999999999
Q ss_pred ecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCccee
Q 000268 358 DARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEID 437 (1757)
Q Consensus 358 Dl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~ 437 (1757)
+...-.++..+ .+|.++|+.++.+|.|++.++.+.|+.+++|++-++... .+.
T Consensus 113 ~~~~W~~~~sl--------------------K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a-------~v~ 165 (362)
T KOG0294|consen 113 RVGSWELLKSL--------------------KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVA-------FVL 165 (362)
T ss_pred EcCCeEEeeee--------------------cccccccceeEecCCCceEEEEcCCceeeeehhhcCccc-------eee
Confidence 98766544443 468888999999999999999999999999999665321 111
Q ss_pred eecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCccccccccccccc
Q 000268 438 VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLK 517 (1757)
Q Consensus 438 ~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~ 517 (1757)
.+ ...-+.|.|+|.| ++++.++.+ .|-||.+.+....
T Consensus 166 ~L---~~~at~v~w~~~G--------------------------d~F~v~~~~-~i~i~q~d~A~v~------------- 202 (362)
T KOG0294|consen 166 NL---KNKATLVSWSPQG--------------------------DHFVVSGRN-KIDIYQLDNASVF------------- 202 (362)
T ss_pred cc---CCcceeeEEcCCC--------------------------CEEEEEecc-EEEEEecccHhHh-------------
Confidence 11 1222348899876 677777665 5778877752211
Q ss_pred CCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEec-CCCc
Q 000268 518 VPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHP-FNPR 596 (1757)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSP-dd~~ 596 (1757)
........+.++.|- ++..|++|+.|+.|.+||..++.+...+.+|...|.++.+-- ..+.
T Consensus 203 -----------------~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~ 264 (362)
T KOG0294|consen 203 -----------------REIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHE 264 (362)
T ss_pred -----------------hhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCce
Confidence 111122345555553 677899999999999999999999999999999999998532 2568
Q ss_pred EEEEEeCCCcEEEEeCCCC
Q 000268 597 IAMSAGYDGKTIVWDIWEG 615 (1757)
Q Consensus 597 lLaSgs~DG~IrIWDl~tg 615 (1757)
+|+|++.||.|+|||+...
T Consensus 265 ~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 265 YLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEEEeccCceEEEEEcccc
Confidence 9999999999999999765
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-20 Score=235.32 Aligned_cols=216 Identities=10% Similarity=0.193 Sum_probs=165.6
Q ss_pred ccccccceeEEEEccCCCCEEEEEECCC-CCEEEEEcCCceEEEEecCCCe--------EEEEEecCCCCeEEEEEcCCC
Q 000268 227 STMVQKMQNIKRVRGHRNAVYCAIFDRS-GRYVITGSDDRLVKIWSMETAY--------CLASCRGHEGDITDLAVSSNN 297 (1757)
Q Consensus 227 ~~~~~~~k~l~tL~GH~~~V~~VaFSPD-G~~LATGS~DGtIkIWDl~tg~--------~l~tL~gH~~~VtsLafSPDg 297 (1757)
.|...+...+..|.||.+.|.+++|+|+ +.+||||+.||+|+|||+.++. .+..+.+|...|.+++|+|++
T Consensus 58 L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g 137 (568)
T PTZ00420 58 LENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMN 137 (568)
T ss_pred eeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCC
Confidence 3444445678899999999999999997 7999999999999999997642 345678999999999999998
Q ss_pred CE-EEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCcc
Q 000268 298 AL-VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDA 376 (1757)
Q Consensus 298 ~l-LASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~ 376 (1757)
.. |++++.|++|+|||+.+++.+..+. |...|.+++|+|++. +|++++.|+.|+|||++++..+..+.
T Consensus 138 ~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~---lLat~s~D~~IrIwD~Rsg~~i~tl~------- 206 (568)
T PTZ00420 138 YYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGN---LLSGTCVGKHMHIIDPRKQEIASSFH------- 206 (568)
T ss_pred CeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCC---EEEEEecCCEEEEEECCCCcEEEEEe-------
Confidence 75 5789999999999999998877775 668899999999997 89999999999999999987665442
Q ss_pred ccCCCCCCCCCCCCCCcc-----eEEEEECCCCCEEEEeeCCc----eEEEecCCCCCCCCCCCCCcceeee--cCCCCC
Q 000268 377 VAGRNMAPSSSAGPQSHQ-----IFCCAFNANGTVFVTGSSDT----LARVWNACKPNTDDSDQPNHEIDVL--SGHEND 445 (1757)
Q Consensus 377 ~~g~~~~~~~~~~~~~~~-----V~slafSpdG~~LasGs~DG----~IrVWDl~t~~~~~s~~~~~~i~~l--~gH~~~ 445 (1757)
.|.+. ++...|++++.+|++++.++ .|+|||+++. ...+..+ ..+.+.
T Consensus 207 -------------gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~--------~~pl~~~~ld~~~~~ 265 (568)
T PTZ00420 207 -------------IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT--------TSALVTMSIDNASAP 265 (568)
T ss_pred -------------cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC--------CCceEEEEecCCccc
Confidence 12222 34445678999999887764 7999999742 1122222 222222
Q ss_pred ceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCC
Q 000268 446 VNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 500 (1757)
Q Consensus 446 V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t 500 (1757)
+...-..+. +.++++|+.|++|++|++..
T Consensus 266 L~p~~D~~t--------------------------g~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 266 LIPHYDEST--------------------------GLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred eEEeeeCCC--------------------------CCEEEEEECCCeEEEEEccC
Confidence 222222222 25788999999999999875
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-19 Score=212.30 Aligned_cols=275 Identities=12% Similarity=0.069 Sum_probs=200.2
Q ss_pred CEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccc
Q 000268 298 ALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAV 377 (1757)
Q Consensus 298 ~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~ 377 (1757)
.++++++.|+.|++||+.+++.+..+..+.. +.+++|+|++. ..+++++.++.|++||+.+++....+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~--~l~~~~~~~~~v~~~d~~~~~~~~~~~-------- 70 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGK--LLYVCASDSDTIQVIDLATGEVIGTLP-------- 70 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCC--EEEEEECCCCeEEEEECCCCcEEEecc--------
Confidence 5788999999999999999999888876544 67899999986 234677789999999998876544331
Q ss_pred cCCCCCCCCCCCCCCcceEEEEECCCCCEEEEe-eCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcc
Q 000268 378 AGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG-SSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAV 456 (1757)
Q Consensus 378 ~g~~~~~~~~~~~~~~~V~slafSpdG~~LasG-s~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~ 456 (1757)
....+..++|+|+++.++++ +.++.|++||+.+. ..+..+.. ...+.+++|+|++
T Consensus 71 -------------~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~---------~~~~~~~~-~~~~~~~~~~~dg- 126 (300)
T TIGR03866 71 -------------SGPDPELFALHPNGKILYIANEDDNLVTVIDIETR---------KVLAEIPV-GVEPEGMAVSPDG- 126 (300)
T ss_pred -------------CCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCC---------eEEeEeeC-CCCcceEEECCCC-
Confidence 01124578899999877654 56899999999652 22333332 2346789999886
Q ss_pred ccccccccCCCCCCCCcccccccCCCcEEEEcCCC-eEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCcee
Q 000268 457 ASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG-SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR 535 (1757)
Q Consensus 457 ~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DG-tI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~ 535 (1757)
..+++++.++ .+.+||..+.... ..
T Consensus 127 -------------------------~~l~~~~~~~~~~~~~d~~~~~~~-----------------------------~~ 152 (300)
T TIGR03866 127 -------------------------KIVVNTSETTNMAHFIDTKTYEIV-----------------------------DN 152 (300)
T ss_pred -------------------------CEEEEEecCCCeEEEEeCCCCeEE-----------------------------EE
Confidence 5777777665 4667787653210 00
Q ss_pred ecCCCCCeeEEEEcCCCCEEEEE-ecCCeEEEEECCCCceEEEEeCCCC-------CeEEEEEecCCCcEEEEEeCCCcE
Q 000268 536 ILPTPRGVNMIVWSLDNRFVLAA-IMDCRICVWNAADGSLVHSLTGHTE-------STYVLDVHPFNPRIAMSAGYDGKT 607 (1757)
Q Consensus 536 l~~h~~~VtsVafSPDG~~LaSG-s~DG~I~IWDl~tgkll~~L~gH~~-------~VtsLafSPdd~~lLaSgs~DG~I 607 (1757)
. .....+.+++|+++|++|+++ ..++.|++||+.+++.+..+..+.. ....++|+|++..++++.+.++.|
T Consensus 153 ~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i 231 (300)
T TIGR03866 153 V-LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRV 231 (300)
T ss_pred E-EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeE
Confidence 0 112235678999999988655 4689999999999988877653321 234688999555545555667789
Q ss_pred EEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCcccccc
Q 000268 608 IVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILS-DDVGQLYILNTGQGESQKDA 663 (1757)
Q Consensus 608 rIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsg-s~DG~I~IWdl~tGe~~~~~ 663 (1757)
.+||+.+++.+..+. +...+.+++|+|+|++|+++ ..+|.|.+||+.+++.+..+
T Consensus 232 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 232 AVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred EEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 999999998877664 34578899999999999986 56899999999998876544
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-19 Score=215.73 Aligned_cols=141 Identities=21% Similarity=0.269 Sum_probs=119.5
Q ss_pred eeEEEEcC-CCCEEEEEecCCeEEEEECCCC-------ceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 000268 543 VNMIVWSL-DNRFVLAAIMDCRICVWNAADG-------SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614 (1757)
Q Consensus 543 VtsVafSP-DG~~LaSGs~DG~I~IWDl~tg-------kll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~t 614 (1757)
|+.+.|.| |...|++++.||.|+||.+..+ .+...+++|...|+.+.|||.-..+|+++++|.+|+|||+.+
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~ 709 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN 709 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence 46666666 5568999999999999998764 356688999999999999998888999999999999999999
Q ss_pred CceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc-c-------ccccceeecCCCccEEEccCCc
Q 000268 615 GIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQ-K-------DAKYDQFFLGDYRPLVQDTYGN 683 (1757)
Q Consensus 615 g~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~tGe~~-~-------~~~~~~~fs~D~r~Li~d~~g~ 683 (1757)
++....+.+|...|..++|||||+.+|+.+.||+|+||...+++.. . ..-....|.-|++.++......
T Consensus 710 ~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 710 AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDK 786 (1012)
T ss_pred hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence 9999999999999999999999999999999999999999876542 1 1123447888999888665444
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.2e-20 Score=204.88 Aligned_cols=281 Identities=16% Similarity=0.211 Sum_probs=212.3
Q ss_pred CCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEE
Q 000268 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISV 322 (1757)
Q Consensus 243 ~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~ 322 (1757)
...|..|.|+|.+..|+.++.||++++|++....+...++ |..++.+++|.+ ...+++|+.||.|+++|+.++... .
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~ 89 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-Q 89 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-e
Confidence 5679999999999999999999999999999886666665 899999999997 457899999999999999888754 4
Q ss_pred ecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECC
Q 000268 323 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA 402 (1757)
Q Consensus 323 l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSp 402 (1757)
+..|...|.||.+++-.. .+++|+.|++|++||.+.......+ .....|.|+..
T Consensus 90 igth~~~i~ci~~~~~~~---~vIsgsWD~~ik~wD~R~~~~~~~~---------------------d~~kkVy~~~v-- 143 (323)
T KOG1036|consen 90 IGTHDEGIRCIEYSYEVG---CVISGSWDKTIKFWDPRNKVVVGTF---------------------DQGKKVYCMDV-- 143 (323)
T ss_pred eccCCCceEEEEeeccCC---eEEEcccCccEEEEecccccccccc---------------------ccCceEEEEec--
Confidence 556999999999998765 8999999999999999864332222 12336777776
Q ss_pred CCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCC
Q 000268 403 NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHD 482 (1757)
Q Consensus 403 dG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1757)
.|..|++|+.+..|.+||+++..... ...-..-.-.+.+|++.|++ .
T Consensus 144 ~g~~LvVg~~~r~v~iyDLRn~~~~~-------q~reS~lkyqtR~v~~~pn~--------------------------e 190 (323)
T KOG1036|consen 144 SGNRLVVGTSDRKVLIYDLRNLDEPF-------QRRESSLKYQTRCVALVPNG--------------------------E 190 (323)
T ss_pred cCCEEEEeecCceEEEEEcccccchh-------hhccccceeEEEEEEEecCC--------------------------C
Confidence 56789999999999999998643211 11122334467889998865 5
Q ss_pred cEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCC
Q 000268 483 NIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC 562 (1757)
Q Consensus 483 ~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG 562 (1757)
-+++++-||.|.+=.+...... -.+.+.+..... ...-...-.+|++|+|+|-..+||||+.||
T Consensus 191 Gy~~sSieGRVavE~~d~s~~~-----~skkyaFkCHr~-----------~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG 254 (323)
T KOG1036|consen 191 GYVVSSIEGRVAVEYFDDSEEA-----QSKKYAFKCHRL-----------SEKDTEIIYPVNAIAFHPIHGTFATGGSDG 254 (323)
T ss_pred ceEEEeecceEEEEccCCchHH-----hhhceeEEeeec-----------ccCCceEEEEeceeEeccccceEEecCCCc
Confidence 7899999999988655542100 001111111000 000001124699999999999999999999
Q ss_pred eEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEe
Q 000268 563 RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAG 602 (1757)
Q Consensus 563 ~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs 602 (1757)
.|.+||+.+.+.+..|..-...|..++|+- ++..||.|+
T Consensus 255 ~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~-dG~~LAia~ 293 (323)
T KOG1036|consen 255 IVNIWDLFNRKRLKQLAKYETSISSLSFSM-DGSLLAIAS 293 (323)
T ss_pred eEEEccCcchhhhhhccCCCCceEEEEecc-CCCeEEEEe
Confidence 999999999999999988878899999998 566666664
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.1e-20 Score=211.68 Aligned_cols=282 Identities=15% Similarity=0.191 Sum_probs=235.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCc
Q 000268 285 EGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQF 364 (1757)
Q Consensus 285 ~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~ 364 (1757)
...|+++...+....+++|+.|..+.++|..+++.+..+.||...|+.+.|+|+.. .+++++.|..|+||.......
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~---~v~~aSad~~i~vws~~~~s~ 295 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLD---TVITASADEIIRVWSVPLSSE 295 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchh---heeecCCcceEEeeccccccC
Confidence 35688888888877999999999999999999999999999999999999999986 899999999999999876542
Q ss_pred cceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecC--C
Q 000268 365 SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG--H 442 (1757)
Q Consensus 365 ~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~g--H 442 (1757)
.. ...+|...|+.+..+|.|.+|++++.||++.+.|++++. .+..... .
T Consensus 296 ~~--------------------~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~---------~lt~vs~~~s 346 (506)
T KOG0289|consen 296 PT--------------------SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGS---------QLTVVSDETS 346 (506)
T ss_pred cc--------------------ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCc---------EEEEEeeccc
Confidence 22 234688999999999999999999999999999997643 3333222 2
Q ss_pred CCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCC
Q 000268 443 ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPP 522 (1757)
Q Consensus 443 ~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~ 522 (1757)
.-.+++.+|.|+| -.|.+|..||.|+|||+.++.
T Consensus 347 ~v~~ts~~fHpDg--------------------------Lifgtgt~d~~vkiwdlks~~-------------------- 380 (506)
T KOG0289|consen 347 DVEYTSAAFHPDG--------------------------LIFGTGTPDGVVKIWDLKSQT-------------------- 380 (506)
T ss_pred cceeEEeeEcCCc--------------------------eEEeccCCCceEEEEEcCCcc--------------------
Confidence 3358899999998 488999999999999998622
Q ss_pred CCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCC-CCeEEEEEecCCCcEEEEE
Q 000268 523 MPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHT-ESTYVLDVHPFNPRIAMSA 601 (1757)
Q Consensus 523 ~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~-~~VtsLafSPdd~~lLaSg 601 (1757)
....+.+|.++|..|+|+-+|-|||+++.|+.|++||++.-+...++.-.. ..|.++.|.+ .+.+|+.+
T Consensus 381 ---------~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~-SGt~L~~~ 450 (506)
T KOG0289|consen 381 ---------NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ-SGTYLGIA 450 (506)
T ss_pred ---------ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC-CCCeEEee
Confidence 344567799999999999999999999999999999999888777775432 3689999988 77888888
Q ss_pred eCCCcEEEEeCC--CCceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 000268 602 GYDGKTIVWDIW--EGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 654 (1757)
Q Consensus 602 s~DG~IrIWDl~--tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl 654 (1757)
|.|=.|++++-. ...++..+..|.+..+.+.|....++|++++.|..++++.+
T Consensus 451 g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 451 GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 877666666633 45677777777778899999999999999999988888754
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=202.97 Aligned_cols=308 Identities=15% Similarity=0.164 Sum_probs=218.7
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCC-----ceEEecCCCCceEEEEecCCCCceEEEEEEeCCCc
Q 000268 279 ASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL-----PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGT 353 (1757)
Q Consensus 279 ~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~-----~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGt 353 (1757)
..|++|.+.|++|+|+.||+.||+++.|++|+||++.+-. +++.-- .-+..+.++|.||... .++++-...+
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s--~vv~~~~g~~ 156 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKS--VVVSVKRGNK 156 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcce--EEEEEccCCE
Confidence 3578999999999999999999999999999999997632 221111 1235688999999873 5666667778
Q ss_pred EEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCC
Q 000268 354 CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPN 433 (1757)
Q Consensus 354 IrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~ 433 (1757)
+++|-+...+- ....+ .............|...+..+-...++.+|++++.|..|.+|+++ +
T Consensus 157 l~vyk~~K~~d-G~~~~-------~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk----------G 218 (420)
T KOG2096|consen 157 LCVYKLVKKTD-GSGSH-------HFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK----------G 218 (420)
T ss_pred EEEEEeeeccc-CCCCc-------ccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC----------C
Confidence 99997653221 00000 000011112234466667778888889999999999999999996 3
Q ss_pred cceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCccccccccc
Q 000268 434 HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQA 513 (1757)
Q Consensus 434 ~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~ 513 (1757)
+.+..+......-+..+.+|+| ..+++++..-.|++|.+--.+ -+.+
T Consensus 219 q~L~~idtnq~~n~~aavSP~G--------------------------RFia~~gFTpDVkVwE~~f~k----dG~f--- 265 (420)
T KOG2096|consen 219 QLLQSIDTNQSSNYDAAVSPDG--------------------------RFIAVSGFTPDVKVWEPIFTK----DGTF--- 265 (420)
T ss_pred ceeeeeccccccccceeeCCCC--------------------------cEEEEecCCCCceEEEEEecc----Ccch---
Confidence 4455555556666777889987 688889988999999765221 0100
Q ss_pred ccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCC-------CceEEEE----eCCC
Q 000268 514 YHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD-------GSLVHSL----TGHT 582 (1757)
Q Consensus 514 ~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~t-------gkll~~L----~gH~ 582 (1757)
........+.+|...|..++||++.+.+++.+.||+++|||+.- .+.+++. ....
T Consensus 266 --------------qev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag 331 (420)
T KOG2096|consen 266 --------------QEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAG 331 (420)
T ss_pred --------------hhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcC
Confidence 01223456788999999999999999999999999999999742 2233322 1223
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-ecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 000268 583 ESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE-ISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 657 (1757)
Q Consensus 583 ~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~-~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~tG 657 (1757)
+.-..++.+| .+..||. +....|+++..++|+....++ .|...|.+++|++||+++|++++ ..++++.-..|
T Consensus 332 ~~p~RL~lsP-~g~~lA~-s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd-r~vrv~~ntpg 404 (420)
T KOG2096|consen 332 SEPVRLELSP-SGDSLAV-SFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD-RYVRVIRNTPG 404 (420)
T ss_pred CCceEEEeCC-CCcEEEe-ecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc-eeeeeecCCCc
Confidence 3345899999 5555543 345679999999998877765 46778999999999999998875 67777764333
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-20 Score=219.90 Aligned_cols=240 Identities=19% Similarity=0.311 Sum_probs=199.5
Q ss_pred CCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECC-------
Q 000268 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP------- 315 (1757)
Q Consensus 243 ~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~------- 315 (1757)
.+.|.|++-+|.|.+|+.|+..|.|++|.+.+|.++..+.+|-..|+|+.|+-||.+|+||+.||.|.+|.+.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred --CCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCc
Q 000268 316 --DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 393 (1757)
Q Consensus 316 --tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~ 393 (1757)
+-+++..+..|+-+|+++...+.+.. .+|+|++.|.+|++||+..+.++..+.+ ..
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~-~rl~TaS~D~t~k~wdlS~g~LLlti~f---------------------p~ 218 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGSGGTN-ARLYTASEDRTIKLWDLSLGVLLLTITF---------------------PS 218 (476)
T ss_pred CCCccceeeeccCcceeEEEEecCCCcc-ceEEEecCCceEEEEEeccceeeEEEec---------------------CC
Confidence 34678899999999999999887533 3899999999999999999988877754 34
Q ss_pred ceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCc
Q 000268 394 QIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1757)
Q Consensus 394 ~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~ 473 (1757)
.+.+++.+|.++.+++|+.+|.|.+.++.+. .+....|..-.+..
T Consensus 219 si~av~lDpae~~~yiGt~~G~I~~~~~~~~---------------~~~~~~v~~k~~~~-------------------- 263 (476)
T KOG0646|consen 219 SIKAVALDPAERVVYIGTEEGKIFQNLLFKL---------------SGQSAGVNQKGRHE-------------------- 263 (476)
T ss_pred cceeEEEcccccEEEecCCcceEEeeehhcC---------------Cccccccccccccc--------------------
Confidence 5899999999999999999999999887431 11111111000000
Q ss_pred ccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCC--CeeEEEEcCC
Q 000268 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR--GVNMIVWSLD 551 (1757)
Q Consensus 474 ~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~--~VtsVafSPD 551 (1757)
.+.....+.+|.. .|+|++++-|
T Consensus 264 -------------------------------------------------------~~t~~~~~~Gh~~~~~ITcLais~D 288 (476)
T KOG0646|consen 264 -------------------------------------------------------ENTQINVLVGHENESAITCLAISTD 288 (476)
T ss_pred -------------------------------------------------------ccceeeeeccccCCcceeEEEEecC
Confidence 0112233445555 8999999999
Q ss_pred CCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCC
Q 000268 552 NRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFN 594 (1757)
Q Consensus 552 G~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd 594 (1757)
|.+|++|+.||.|+|||+.+.++++++....++|+.+.+.|.-
T Consensus 289 gtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 289 GTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLE 331 (476)
T ss_pred ccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccc
Confidence 9999999999999999999999999998778899999997743
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-20 Score=217.07 Aligned_cols=256 Identities=20% Similarity=0.316 Sum_probs=210.4
Q ss_pred cCCCCeEEEEEcCCCC-EEEEEeCCceEEEEECCCC----------CceEEecCCCCceEEEEecCCCCceEEEEEEeCC
Q 000268 283 GHEGDITDLAVSSNNA-LVASASNDCIIRVWRLPDG----------LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD 351 (1757)
Q Consensus 283 gH~~~VtsLafSPDg~-lLASgS~DGtIrVWDl~tg----------~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~D 351 (1757)
.|.+.|..+..-|.+. +||+++..+.|.|||..+- .+-..|.+|...-++|+|++... ..|++++.|
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~--g~Lls~~~d 199 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQE--GTLLSGSDD 199 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccc--eeEeeccCC
Confidence 5899999999999765 6677788899999998542 22337889999889999999865 389999999
Q ss_pred CcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECC-CCCEEEEeeCCceEEEecCCCCCCCCCC
Q 000268 352 GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSD 430 (1757)
Q Consensus 352 GtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSp-dG~~LasGs~DG~IrVWDl~t~~~~~s~ 430 (1757)
++|++||+....... ....+.....+|...|..++|++ +..+|++++.|+.+.|||+++.
T Consensus 200 ~~i~lwdi~~~~~~~-------------~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~------ 260 (422)
T KOG0264|consen 200 HTICLWDINAESKED-------------KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN------ 260 (422)
T ss_pred CcEEEEeccccccCC-------------ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC------
Confidence 999999998654321 11233344567899999999999 5678899999999999999852
Q ss_pred CCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccc
Q 000268 431 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510 (1757)
Q Consensus 431 ~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w 510 (1757)
..+......+|.+.|++++|+|-. ...||+||.|++|.+||++...
T Consensus 261 -~~~~~~~~~ah~~~vn~~~fnp~~-------------------------~~ilAT~S~D~tV~LwDlRnL~-------- 306 (422)
T KOG0264|consen 261 -TSKPSHSVKAHSAEVNCVAFNPFN-------------------------EFILATGSADKTVALWDLRNLN-------- 306 (422)
T ss_pred -CCCCcccccccCCceeEEEeCCCC-------------------------CceEEeccCCCcEEEeechhcc--------
Confidence 134556678999999999999865 4689999999999999999622
Q ss_pred cccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCC-EEEEEecCCeEEEEECCC--------------CceE
Q 000268 511 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR-FVLAAIMDCRICVWNAAD--------------GSLV 575 (1757)
Q Consensus 511 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~-~LaSGs~DG~I~IWDl~t--------------gkll 575 (1757)
.+...+.+|...|.+|.|||... .||+++.|+.+.|||+.. .+++
T Consensus 307 --------------------~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEll 366 (422)
T KOG0264|consen 307 --------------------KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELL 366 (422)
T ss_pred --------------------cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCccee
Confidence 35667788999999999999765 677888999999999864 2355
Q ss_pred EEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000268 576 HSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1757)
Q Consensus 576 ~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~ 613 (1757)
..-.||...|..+.|+|..+..++|++.|+.+.||...
T Consensus 367 F~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 367 FIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred EEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 67789999999999999999999999999999999985
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.2e-20 Score=215.29 Aligned_cols=282 Identities=15% Similarity=0.203 Sum_probs=231.8
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCC---CceEEecC--CCCceEEEEecCCCCceEEEEEEeCCCcEEEE
Q 000268 283 GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG---LPISVLRG--HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIW 357 (1757)
Q Consensus 283 gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg---~~l~~l~g--H~~~VtsLafSPdg~~~~~LaSgs~DGtIrIW 357 (1757)
.|..-|.++++|...+++.+|+ .|.|+|||+... .++..|.. ....|.++.++||+. .|++|+.-.+|.||
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgr---tLivGGeastlsiW 492 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGR---TLIVGGEASTLSIW 492 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCc---eEEeccccceeeee
Confidence 4788889999999999999987 467999999642 44555443 456799999999997 89999999999999
Q ss_pred ecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCccee
Q 000268 358 DARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEID 437 (1757)
Q Consensus 358 Dl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~ 437 (1757)
|+..........+ ....-...+++.+||.++.++++.||.|.|||+.+ ...++
T Consensus 493 DLAapTprikael------------------tssapaCyALa~spDakvcFsccsdGnI~vwDLhn---------q~~Vr 545 (705)
T KOG0639|consen 493 DLAAPTPRIKAEL------------------TSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHN---------QTLVR 545 (705)
T ss_pred eccCCCcchhhhc------------------CCcchhhhhhhcCCccceeeeeccCCcEEEEEccc---------ceeee
Confidence 9986543221111 11223467889999999999999999999999965 45788
Q ss_pred eecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCccccccccccccc
Q 000268 438 VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLK 517 (1757)
Q Consensus 438 ~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~ 517 (1757)
.+.||.+.+.||.++++| ..|.+|+-|.+|+.||+++++...
T Consensus 546 qfqGhtDGascIdis~dG--------------------------tklWTGGlDntvRcWDlregrqlq------------ 587 (705)
T KOG0639|consen 546 QFQGHTDGASCIDISKDG--------------------------TKLWTGGLDNTVRCWDLREGRQLQ------------ 587 (705)
T ss_pred cccCCCCCceeEEecCCC--------------------------ceeecCCCccceeehhhhhhhhhh------------
Confidence 999999999999999987 689999999999999999754211
Q ss_pred CCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcE
Q 000268 518 VPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRI 597 (1757)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~l 597 (1757)
.......|.++..+|.+.+|++|-.++.+.|... ++.....+.-|...|.++.|.+ .+++
T Consensus 588 ------------------qhdF~SQIfSLg~cP~~dWlavGMens~vevlh~-skp~kyqlhlheScVLSlKFa~-cGkw 647 (705)
T KOG0639|consen 588 ------------------QHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHT-SKPEKYQLHLHESCVLSLKFAY-CGKW 647 (705)
T ss_pred ------------------hhhhhhhheecccCCCccceeeecccCcEEEEec-CCccceeecccccEEEEEEecc-cCce
Confidence 1122356889999999999999999999999886 4555667778999999999999 6788
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 000268 598 AMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 654 (1757)
Q Consensus 598 LaSgs~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl 654 (1757)
+++.|.|..+..|..--|..+.... ....|+++.+|-|.++|++|+.|....||.+
T Consensus 648 fvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 648 FVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 8999999999999999998887765 5678999999999999999999988888765
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.1e-20 Score=219.23 Aligned_cols=308 Identities=20% Similarity=0.293 Sum_probs=213.9
Q ss_pred EEECC---CCCEEEEEcCCceEEEEecCCCeE------EEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCc
Q 000268 249 AIFDR---SGRYVITGSDDRLVKIWSMETAYC------LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLP 319 (1757)
Q Consensus 249 VaFSP---DG~~LATGS~DGtIkIWDl~tg~~------l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~ 319 (1757)
+.|++ ....||.+.+||.|.++|...... +.....|.+.|.++.|.|....|++++.|.+|++||+.++.+
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 55655 346899999999999999865432 244557999999999999667899999999999999999988
Q ss_pred eEE--ecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccc------eeec-----CCCCccccCCCCCCCC
Q 000268 320 ISV--LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSP------RIYI-----PRPSDAVAGRNMAPSS 386 (1757)
Q Consensus 320 l~~--l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~------~i~l-----~~~~~~~~g~~~~~~~ 386 (1757)
+.. +.||.+.|.++||.|.+. ..|++|+.||.|.|||++...... .+.. +.+...... ...
T Consensus 135 ~G~~~~~GH~~SvkS~cf~~~n~--~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k----r~~ 208 (720)
T KOG0321|consen 135 VGGRLNLGHTGSVKSECFMPTNP--AVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK----RIR 208 (720)
T ss_pred ecceeecccccccchhhhccCCC--cceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc----ccc
Confidence 776 899999999999999876 479999999999999998554110 0000 000000000 011
Q ss_pred CCCCCCcceEE---EEECCCCCEEEEeeC-CceEEEecCCCCCCCCCCCCCcceeeecCC---CCCceEEEEccCccccc
Q 000268 387 SAGPQSHQIFC---CAFNANGTVFVTGSS-DTLARVWNACKPNTDDSDQPNHEIDVLSGH---ENDVNYVQFSGCAVASR 459 (1757)
Q Consensus 387 ~~~~~~~~V~s---lafSpdG~~LasGs~-DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH---~~~V~sLafSpdg~~s~ 459 (1757)
....+...|.+ +.+..|...||+++. |+.|+|||+++.......++... ..+..| ...+.++.....|
T Consensus 209 k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~-~~~~t~skrs~G~~nL~lDssG---- 283 (720)
T KOG0321|consen 209 KWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGS-DKYPTHSKRSVGQVNLILDSSG---- 283 (720)
T ss_pred ccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcc-cCccCcccceeeeEEEEecCCC----
Confidence 12233344444 555568888888877 99999999998765444333222 222223 2233444443332
Q ss_pred cccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCC
Q 000268 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT 539 (1757)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h 539 (1757)
.+|++.+.|+.|.+|++.+... .+...+.++
T Consensus 284 ----------------------t~L~AsCtD~sIy~ynm~s~s~---------------------------sP~~~~sg~ 314 (720)
T KOG0321|consen 284 ----------------------TYLFASCTDNSIYFYNMRSLSI---------------------------SPVAEFSGK 314 (720)
T ss_pred ----------------------CeEEEEecCCcEEEEeccccCc---------------------------CchhhccCc
Confidence 4555555599999999986321 111112222
Q ss_pred CCC--eeEEEEcCCCCEEEEEecCCeEEEEECCCCc-eEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc
Q 000268 540 PRG--VNMIVWSLDNRFVLAAIMDCRICVWNAADGS-LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI 616 (1757)
Q Consensus 540 ~~~--VtsVafSPDG~~LaSGs~DG~I~IWDl~tgk-ll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~ 616 (1757)
... ...-..+||+.+|++|+.|...++|.+.+.+ ....+.||.-.|++++|.|..-.-+++++.|..++||++..+-
T Consensus 315 ~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 315 LNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred ccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 111 1223579999999999999999999998865 4567789999999999998655667788999999999996553
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-19 Score=213.11 Aligned_cols=266 Identities=19% Similarity=0.332 Sum_probs=208.7
Q ss_pred CCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCC
Q 000268 325 GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG 404 (1757)
Q Consensus 325 gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG 404 (1757)
.|.+.|+.+...|... ..+++.+..+.|.|||.....-..... + ...+...+.+|...-.+++|++..
T Consensus 122 ~h~gEVnRaRymPQnp--~iVAt~t~~~dv~Vfd~tk~~s~~~~~---------~-~~~Pdl~L~gH~~eg~glsWn~~~ 189 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNP--NIVATKTSSGDVYVFDYTKHPSKPKAS---------G-ECRPDLRLKGHEKEGYGLSWNRQQ 189 (422)
T ss_pred cCCccchhhhhCCCCC--cEEEecCCCCCEEEEEeccCCCccccc---------c-cCCCceEEEeeccccccccccccc
Confidence 4899999999999876 478888999999999987543222110 0 122333445566667789999843
Q ss_pred -CEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCc
Q 000268 405 -TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDN 483 (1757)
Q Consensus 405 -~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (1757)
-.|++|+.|+.|++||+...... .........+.+|...|..++|.+-- .+.
T Consensus 190 ~g~Lls~~~d~~i~lwdi~~~~~~--~~~~~p~~~~~~h~~~VeDV~~h~~h-------------------------~~l 242 (422)
T KOG0264|consen 190 EGTLLSGSDDHTICLWDINAESKE--DKVVDPKTIFSGHEDVVEDVAWHPLH-------------------------EDL 242 (422)
T ss_pred ceeEeeccCCCcEEEEeccccccC--CccccceEEeecCCcceehhhccccc-------------------------hhh
Confidence 47899999999999999654322 22244567889999999999999754 468
Q ss_pred EEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCC-EEEEEecCC
Q 000268 484 IVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR-FVLAAIMDC 562 (1757)
Q Consensus 484 LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~-~LaSGs~DG 562 (1757)
|++++.|+.+.|||+++.. ..+......|...|+|++|+|-+. .||+|+.|+
T Consensus 243 F~sv~dd~~L~iwD~R~~~---------------------------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~ 295 (422)
T KOG0264|consen 243 FGSVGDDGKLMIWDTRSNT---------------------------SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADK 295 (422)
T ss_pred heeecCCCeEEEEEcCCCC---------------------------CCCcccccccCCceeEEEeCCCCCceEEeccCCC
Confidence 9999999999999999521 223345567899999999999655 577899999
Q ss_pred eEEEEECCCC-ceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC--------------ceEEEEeecCcc
Q 000268 563 RICVWNAADG-SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG--------------IPIRIYEISRFR 627 (1757)
Q Consensus 563 ~I~IWDl~tg-kll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg--------------~~l~~l~~~~~~ 627 (1757)
+|++||+++. ++++++.+|...|.+|.|+|....+||++|.|+.+.|||+..- +++..-.+|...
T Consensus 296 tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~k 375 (422)
T KOG0264|consen 296 TVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAK 375 (422)
T ss_pred cEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccc
Confidence 9999999884 5789999999999999999988899999999999999999641 223444567788
Q ss_pred eEEEEEcCCCCEEE-EEeCCCeEEEEECCC
Q 000268 628 LVDGKFSPDGASII-LSDDVGQLYILNTGQ 656 (1757)
Q Consensus 628 VtslafSPDGk~LA-sgs~DG~I~IWdl~t 656 (1757)
|.++.|+|...+++ +++.|+.+.||+...
T Consensus 376 V~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 376 VSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 99999999987655 679999999999753
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.5e-20 Score=201.31 Aligned_cols=252 Identities=19% Similarity=0.280 Sum_probs=196.0
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCC---CceEEecCCCCceEEEEecC--CCCceEEEEEEeCCCcEEE
Q 000268 282 RGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG---LPISVLRGHTAAVTAIAFSP--RPGSVYQLLSSSDDGTCRI 356 (1757)
Q Consensus 282 ~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg---~~l~~l~gH~~~VtsLafSP--dg~~~~~LaSgs~DGtIrI 356 (1757)
..|...|.++...-.|++|||++.|++|+|+.+... +++..|.||.++|+.++|.. .|. +|++++.||.|.|
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~---iLAScsYDgkVIi 84 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT---ILASCSYDGKVII 84 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc---EeeEeecCceEEE
Confidence 468888999888889999999999999999999754 56889999999999999976 444 8999999999999
Q ss_pred EecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcce
Q 000268 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 436 (1757)
Q Consensus 357 WDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i 436 (1757)
|.-..++.. ..
T Consensus 85 Wke~~g~w~---------------------------------------------------------------------k~ 95 (299)
T KOG1332|consen 85 WKEENGRWT---------------------------------------------------------------------KA 95 (299)
T ss_pred EecCCCchh---------------------------------------------------------------------hh
Confidence 976554321 12
Q ss_pred eeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccc
Q 000268 437 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHL 516 (1757)
Q Consensus 437 ~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l 516 (1757)
.....|...|++|+|.|... +-.|++++.||.|.|.+.++. +.|
T Consensus 96 ~e~~~h~~SVNsV~waphey------------------------gl~LacasSDG~vsvl~~~~~------g~w------ 139 (299)
T KOG1332|consen 96 YEHAAHSASVNSVAWAPHEY------------------------GLLLACASSDGKVSVLTYDSS------GGW------ 139 (299)
T ss_pred hhhhhhcccceeeccccccc------------------------ceEEEEeeCCCcEEEEEEcCC------CCc------
Confidence 23445677777777777652 136788888888888877642 111
Q ss_pred cCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCC---C-----------CEEEEEecCCeEEEEECCCC--ceEEEEeC
Q 000268 517 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD---N-----------RFVLAAIMDCRICVWNAADG--SLVHSLTG 580 (1757)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPD---G-----------~~LaSGs~DG~I~IWDl~tg--kll~~L~g 580 (1757)
........|.-+|++++|.|- | +.|++|+.|..|+||+..++ ++-++|.+
T Consensus 140 --------------~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~ 205 (299)
T KOG1332|consen 140 --------------TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEG 205 (299)
T ss_pred --------------cchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhh
Confidence 112334568888999999986 5 57999999999999999876 34557999
Q ss_pred CCCCeEEEEEecCCC---cEEEEEeCCCcEEEEeCCCC--c-eEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 000268 581 HTESTYVLDVHPFNP---RIAMSAGYDGKTIVWDIWEG--I-PIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 654 (1757)
Q Consensus 581 H~~~VtsLafSPdd~---~lLaSgs~DG~IrIWDl~tg--~-~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl 654 (1757)
|.+.|..++|.|..+ ..+|+++.||+|.||..... . ....+......+..+.||+.|..|++++.|..|.+|.-
T Consensus 206 H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 206 HKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred cchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 999999999999543 68999999999999987532 1 12223334567899999999999999999999999985
Q ss_pred C
Q 000268 655 G 655 (1757)
Q Consensus 655 ~ 655 (1757)
.
T Consensus 286 ~ 286 (299)
T KOG1332|consen 286 N 286 (299)
T ss_pred C
Confidence 3
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.2e-20 Score=214.47 Aligned_cols=280 Identities=15% Similarity=0.287 Sum_probs=228.7
Q ss_pred cCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCC---eEEEEEe--cCCCCeEEEEEcCCCCEEEEEeCCceEEEEECC
Q 000268 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA---YCLASCR--GHEGDITDLAVSSNNALVASASNDCIIRVWRLP 315 (1757)
Q Consensus 241 GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg---~~l~tL~--gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~ 315 (1757)
.|..-|.++++|...+.+.||+. |.|+|||+... ..+..|. ...+.|+++.+.|||+.|++|+.-.+|.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 58899999999999999999986 78999999532 2333333 246789999999999999999999999999997
Q ss_pred CCCc--eEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCc
Q 000268 316 DGLP--ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 393 (1757)
Q Consensus 316 tg~~--l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~ 393 (1757)
...+ ...+....-..++++.+||.+ ..++++.||.|.|||+.+..++..+ .+|..
T Consensus 496 apTprikaeltssapaCyALa~spDak---vcFsccsdGnI~vwDLhnq~~Vrqf--------------------qGhtD 552 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAK---VCFSCCSDGNIAVWDLHNQTLVRQF--------------------QGHTD 552 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccc---eeeeeccCCcEEEEEcccceeeecc--------------------cCCCC
Confidence 6543 334444445778899999987 8999999999999999877665554 46888
Q ss_pred ceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCc
Q 000268 394 QIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1757)
Q Consensus 394 ~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~ 473 (1757)
.+.||.++++|..|-+|+-|++||.||++.+.. +.. ......|.++..+|.+
T Consensus 553 GascIdis~dGtklWTGGlDntvRcWDlregrq---------lqq-hdF~SQIfSLg~cP~~------------------ 604 (705)
T KOG0639|consen 553 GASCIDISKDGTKLWTGGLDNTVRCWDLREGRQ---------LQQ-HDFSSQIFSLGYCPTG------------------ 604 (705)
T ss_pred CceeEEecCCCceeecCCCccceeehhhhhhhh---------hhh-hhhhhhheecccCCCc------------------
Confidence 999999999999999999999999999976432 111 1234578888888876
Q ss_pred ccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCC
Q 000268 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 553 (1757)
Q Consensus 474 ~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~ 553 (1757)
++|++|-..+.+-|..... .....+..|...|.++.|++.|+
T Consensus 605 --------dWlavGMens~vevlh~sk------------------------------p~kyqlhlheScVLSlKFa~cGk 646 (705)
T KOG0639|consen 605 --------DWLAVGMENSNVEVLHTSK------------------------------PEKYQLHLHESCVLSLKFAYCGK 646 (705)
T ss_pred --------cceeeecccCcEEEEecCC------------------------------ccceeecccccEEEEEEecccCc
Confidence 7999999999888775542 23345566888999999999999
Q ss_pred EEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000268 554 FVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1757)
Q Consensus 554 ~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl 612 (1757)
++++.+.|..+..|...-|..+...+. ...|.+..+|- +.++++||+.|....||.+
T Consensus 647 wfvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~-ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 647 WFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISF-DDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeeecCchhhhhhccCccccceeeccc-cCcceeeeecc-CceEEEecCCCcceEEEEE
Confidence 999999999999999998988877663 56689999988 7789999999998888875
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=201.34 Aligned_cols=291 Identities=19% Similarity=0.301 Sum_probs=214.7
Q ss_pred EEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecC
Q 000268 246 VYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRG 325 (1757)
Q Consensus 246 V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~g 325 (1757)
-.|+.|++-|.+||+|+.||.|.|||+.|....+.+.+|..+|++++||+||+.|++++.|..|.+||+..|.++..++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 7899999999999999999999999999999888999999999999999999999999999999999999999998887
Q ss_pred CCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCC
Q 000268 326 HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT 405 (1757)
Q Consensus 326 H~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~ 405 (1757)
..++|+.+.|+|...+ .+++.-.+..-.+-++..+. ... ++... .........+..|.+.|+
T Consensus 105 f~spv~~~q~hp~k~n--~~va~~~~~sp~vi~~s~~~--h~~-Lp~d~-------------d~dln~sas~~~fdr~g~ 166 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRN--KCVATIMEESPVVIDFSDPK--HSV-LPKDD-------------DGDLNSSASHGVFDRRGK 166 (405)
T ss_pred ccCccceeeeccccCC--eEEEEEecCCcEEEEecCCc--eee-ccCCC-------------ccccccccccccccCCCC
Confidence 6789999999997653 44444444444455544321 111 11100 011111223347899999
Q ss_pred EEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCC-CCceEEEEccCccccccccccCCCCCCCCcccccccCCCcE
Q 000268 406 VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE-NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI 484 (1757)
Q Consensus 406 ~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~-~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~L 484 (1757)
+|++|...|.+.||+..+. ..+..+.-.. ..|..+.|+-.| ..|
T Consensus 167 yIitGtsKGkllv~~a~t~---------e~vas~rits~~~IK~I~~s~~g--------------------------~~l 211 (405)
T KOG1273|consen 167 YIITGTSKGKLLVYDAETL---------ECVASFRITSVQAIKQIIVSRKG--------------------------RFL 211 (405)
T ss_pred EEEEecCcceEEEEecchh---------eeeeeeeechheeeeEEEEeccC--------------------------cEE
Confidence 9999999999999999763 3333443333 567777777665 789
Q ss_pred EEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeec--CCCCCeeEEEEcCCCCEEEEEec-C
Q 000268 485 VTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL--PTPRGVNMIVWSLDNRFVLAAIM-D 561 (1757)
Q Consensus 485 vSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~--~h~~~VtsVafSPDG~~LaSGs~-D 561 (1757)
+.-+.|..|+.|++..-...+..+ ...+.+.+. -....-.+++||.+|.|+++|+. -
T Consensus 212 iiNtsDRvIR~ye~~di~~~~r~~--------------------e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~a 271 (405)
T KOG1273|consen 212 IINTSDRVIRTYEISDIDDEGRDG--------------------EVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARA 271 (405)
T ss_pred EEecCCceEEEEehhhhcccCccC--------------------CcChhHHHHHHHhhhhhhheeecCCccEEEeccccc
Confidence 999999999999887311000000 001111111 12233567899999999988763 4
Q ss_pred CeEEEEECCCCceEEEEeCCC-CCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000268 562 CRICVWNAADGSLVHSLTGHT-ESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1757)
Q Consensus 562 G~I~IWDl~tgkll~~L~gH~-~~VtsLafSPdd~~lLaSgs~DG~IrIWDl 612 (1757)
..++||....|.+++.|.|.. .....+.|+| -.-++++- ..|.|+||..
T Consensus 272 HaLYIWE~~~GsLVKILhG~kgE~l~DV~whp-~rp~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 272 HALYIWEKSIGSLVKILHGTKGEELLDVNWHP-VRPIIASI-ASGVVYIWAV 321 (405)
T ss_pred eeEEEEecCCcceeeeecCCchhheeeccccc-ceeeeeec-cCCceEEEEe
Confidence 569999999999999999987 4677899999 44455555 6889999986
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=215.64 Aligned_cols=318 Identities=16% Similarity=0.222 Sum_probs=231.7
Q ss_pred eEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCC--EEEEEeCCceEEEE
Q 000268 235 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA--LVASASNDCIIRVW 312 (1757)
Q Consensus 235 ~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~--lLASgS~DGtIrVW 312 (1757)
+...++||++.|.||..+|.|.+||+|++||+|+||.+.||+|++++. ..+.|.||+|+|.+. +||++-.. .+.|-
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~-~~~iv 469 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGE-CVLIV 469 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecC-ceEEe
Confidence 445689999999999999999999999999999999999999999987 456899999999776 45555433 46676
Q ss_pred ECCCCCceEEecCCCCceEEEEecCCCCceEEEEEE----eCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCC
Q 000268 313 RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSS----SDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 388 (1757)
Q Consensus 313 Dl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSg----s~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~ 388 (1757)
+..-|..+..... . . .|+++ ..++.+..|.-........- ....
T Consensus 470 np~~G~~~e~~~t--~-----------e---ll~~~~~~~~p~~~~~~W~~~~~~e~~~~----------------v~~~ 517 (733)
T KOG0650|consen 470 NPIFGDRLEVGPT--K-----------E---LLASAPNESEPDAAVVTWSRASLDELEKG----------------VCIV 517 (733)
T ss_pred Cccccchhhhcch--h-----------h---hhhcCCCccCCcccceeechhhhhhhccc----------------eEEE
Confidence 6554422211100 0 0 11111 23456777764422111100 0011
Q ss_pred CCCCcceEEEEECCCCCEEEEeeCC---ceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccC
Q 000268 389 GPQSHQIFCCAFNANGTVFVTGSSD---TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 465 (1757)
Q Consensus 389 ~~~~~~V~slafSpdG~~LasGs~D---G~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~ 465 (1757)
-.|...|..+.|+..|.+|++...+ ..|.|+++.... ....+....+.|.++.|.|..
T Consensus 518 I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~---------sQ~PF~kskG~vq~v~FHPs~---------- 578 (733)
T KOG0650|consen 518 IKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK---------SQSPFRKSKGLVQRVKFHPSK---------- 578 (733)
T ss_pred EecCCccceeeeecCCceEEEeccCCCcceEEEEeccccc---------ccCchhhcCCceeEEEecCCC----------
Confidence 1356679999999999999987654 478899886532 223344556778999999874
Q ss_pred CCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeE
Q 000268 466 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNM 545 (1757)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~Vts 545 (1757)
.+|++++ -..|+|||+..+. ....+......|..
T Consensus 579 ----------------p~lfVaT-q~~vRiYdL~kqe-----------------------------lvKkL~tg~kwiS~ 612 (733)
T KOG0650|consen 579 ----------------PYLFVAT-QRSVRIYDLSKQE-----------------------------LVKKLLTGSKWISS 612 (733)
T ss_pred ----------------ceEEEEe-ccceEEEehhHHH-----------------------------HHHHHhcCCeeeee
Confidence 3455444 4679999998522 12334445567899
Q ss_pred EEEcCCCCEEEEEecCCeEEEEECCCC-ceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC------CC---
Q 000268 546 IVWSLDNRFVLAAIMDCRICVWNAADG-SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW------EG--- 615 (1757)
Q Consensus 546 VafSPDG~~LaSGs~DG~I~IWDl~tg-kll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~------tg--- 615 (1757)
++++|.|..|++|+.|+.++.||+.-. ++.+++..|...|++|+||+ .--++++|+.||++.|+--. ..
T Consensus 613 msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpli 691 (733)
T KOG0650|consen 613 MSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQNPLI 691 (733)
T ss_pred eeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhcCCce
Confidence 999999999999999999999999654 67889999999999999998 56688999999999998432 11
Q ss_pred ceEEEEeecCc----ceEEEEEcCCCCEEEEEeCCCeEEEE
Q 000268 616 IPIRIYEISRF----RLVDGKFSPDGASIILSDDVGQLYIL 652 (1757)
Q Consensus 616 ~~l~~l~~~~~----~VtslafSPDGk~LAsgs~DG~I~IW 652 (1757)
-++..+.+|.. .|.++.|+|...+|++++.||+|++|
T Consensus 692 VPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 692 VPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred EeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 24555666543 58899999999999999999999998
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.1e-17 Score=194.94 Aligned_cols=333 Identities=26% Similarity=0.502 Sum_probs=259.2
Q ss_pred EEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCe-EEEEEecCCC-CeEEEEE-cCCCC-EEEEEeC-CceEEE
Q 000268 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY-CLASCRGHEG-DITDLAV-SSNNA-LVASASN-DCIIRV 311 (1757)
Q Consensus 237 ~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~-~l~tL~gH~~-~VtsLaf-SPDg~-lLASgS~-DGtIrV 311 (1757)
..+.+|...|.++.|.+.+..++.++.|+.+.+|+...+. .+..+.++.. .+..+.+ ++++. +++..+. |+.+.+
T Consensus 59 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 138 (466)
T COG2319 59 LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL 138 (466)
T ss_pred heeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence 3577899999999999999999999999999999998887 7777776443 7888888 88887 5555445 999999
Q ss_pred EECCC-CCceEEecCCCCceEEEEecCCCCceEEEEEEeC-CCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCC
Q 000268 312 WRLPD-GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD-DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 389 (1757)
Q Consensus 312 WDl~t-g~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~-DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~ 389 (1757)
|++.. ......+..|...|..++|+|++. .+++++. |+.+++|++..+.....+ .
T Consensus 139 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~ 195 (466)
T COG2319 139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGK---LLASGSSLDGTIKLWDLRTGKPLSTL--------------------A 195 (466)
T ss_pred EEecCCCeEEEEEecCcccEEEEEECCCCC---EEEecCCCCCceEEEEcCCCceEEee--------------------c
Confidence 99988 788888999999999999999987 7777775 999999999875444333 2
Q ss_pred CCCcceEEEEECCCCC-EEEEeeCCceEEEecCCCCCCCCCCCCCccee-eecCCCCCceEEEEccCccccccccccCCC
Q 000268 390 PQSHQIFCCAFNANGT-VFVTGSSDTLARVWNACKPNTDDSDQPNHEID-VLSGHENDVNYVQFSGCAVASRFSLADSSK 467 (1757)
Q Consensus 390 ~~~~~V~slafSpdG~-~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~-~l~gH~~~V~sLafSpdg~~s~~~~~~~~~ 467 (1757)
.|...|.+++|+|++. .+++++.|+.|++||... ...+. .+.+|...+ ...|++++
T Consensus 196 ~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~---------~~~~~~~~~~~~~~~-~~~~~~~~------------ 253 (466)
T COG2319 196 GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST---------GKLLRSTLSGHSDSV-VSSFSPDG------------ 253 (466)
T ss_pred cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCC---------CcEEeeecCCCCcce-eEeECCCC------------
Confidence 3678899999999998 555558999999997752 23344 577787775 44777764
Q ss_pred CCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEE
Q 000268 468 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 547 (1757)
Q Consensus 468 ~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVa 547 (1757)
..+++++.|+.+++|++..... .......|...|.++.
T Consensus 254 --------------~~~~~~~~d~~~~~~~~~~~~~----------------------------~~~~~~~~~~~v~~~~ 291 (466)
T COG2319 254 --------------SLLASGSSDGTIRLWDLRSSSS----------------------------LLRTLSGHSSSVLSVA 291 (466)
T ss_pred --------------CEEEEecCCCcEEEeeecCCCc----------------------------EEEEEecCCccEEEEE
Confidence 4778999999999999985321 1111245678899999
Q ss_pred EcCCCCEEEEEecCCeEEEEECCCCceEEEEe--CCCCCeEEEEEecCC-CcEEEEEeCCCcEEEEeCCCCceEEEEeec
Q 000268 548 WSLDNRFVLAAIMDCRICVWNAADGSLVHSLT--GHTESTYVLDVHPFN-PRIAMSAGYDGKTIVWDIWEGIPIRIYEIS 624 (1757)
Q Consensus 548 fSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~--gH~~~VtsLafSPdd-~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~ 624 (1757)
|+|++..+++++.|+.+.+|+..+........ .|...|..+.| +.+ ..++.++..|+.+.+|++.......... .
T Consensus 292 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~ 369 (466)
T COG2319 292 FSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE-G 369 (466)
T ss_pred ECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCCCCEEEEeecCCCcEEeeecCCCceeEEec-C
Confidence 99999999999999999999999888777776 88888999999 434 3444444688999999998887333332 2
Q ss_pred CcceEEEEEcCCCCEEEE-EeCCCeEEEEECCCCcc
Q 000268 625 RFRLVDGKFSPDGASIIL-SDDVGQLYILNTGQGES 659 (1757)
Q Consensus 625 ~~~VtslafSPDGk~LAs-gs~DG~I~IWdl~tGe~ 659 (1757)
...+..+.|++ ...++. +..++.+.+|+......
T Consensus 370 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 404 (466)
T COG2319 370 HSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSL 404 (466)
T ss_pred CceEEEEEECC-CCCEEEEecCCCceEEEecccCee
Confidence 22388899999 544444 68899999999876544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-18 Score=208.14 Aligned_cols=279 Identities=15% Similarity=0.257 Sum_probs=217.1
Q ss_pred CEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEec
Q 000268 245 AVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR 324 (1757)
Q Consensus 245 ~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~ 324 (1757)
.|+.++|-|||..|+.+.. ..+.|||+..|.++.++++|...|.|++|+.||+++|+|+.|..|.||...-.- +..+
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~LkY- 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-ILKY- 90 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-eeee-
Confidence 8999999999998888754 469999999999999999999999999999999999999999999999854222 2222
Q ss_pred CCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCC
Q 000268 325 GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG 404 (1757)
Q Consensus 325 gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG 404 (1757)
.|...|.|+.|.|-.. .|++++-. ..-+|.......... .....+.+++|..||
T Consensus 91 SH~D~IQCMsFNP~~h---~LasCsLs-dFglWS~~qK~V~K~----------------------kss~R~~~CsWtnDG 144 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITH---QLASCSLS-DFGLWSPEQKSVSKH----------------------KSSSRIICCSWTNDG 144 (1081)
T ss_pred ccCCeeeEeecCchHH---Hhhhcchh-hccccChhhhhHHhh----------------------hhheeEEEeeecCCC
Confidence 4999999999999875 77877754 477898765443221 134568999999999
Q ss_pred CEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcE
Q 000268 405 TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI 484 (1757)
Q Consensus 405 ~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~L 484 (1757)
++|+.|-.+|+|.|-+... .+...+..-.|...+|++++|+|.... ...+.+
T Consensus 145 qylalG~~nGTIsiRNk~g-------Eek~~I~Rpgg~Nspiwsi~~~p~sg~---------------------G~~di~ 196 (1081)
T KOG1538|consen 145 QYLALGMFNGTISIRNKNG-------EEKVKIERPGGSNSPIWSICWNPSSGE---------------------GRNDIL 196 (1081)
T ss_pred cEEEEeccCceEEeecCCC-------CcceEEeCCCCCCCCceEEEecCCCCC---------------------CccceE
Confidence 9999999999999986521 223344455667889999999987511 113577
Q ss_pred EEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeE
Q 000268 485 VTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRI 564 (1757)
Q Consensus 485 vSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I 564 (1757)
++.....++.++.+.... +..-..-.-...|+.+-++|.+++.|+.|+.+
T Consensus 197 aV~DW~qTLSFy~LsG~~------------------------------Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L 246 (1081)
T KOG1538|consen 197 AVADWGQTLSFYQLSGKQ------------------------------IGKDRALNFDPCCISYFTNGEYILLGGSDKQL 246 (1081)
T ss_pred EEEeccceeEEEEeccee------------------------------ecccccCCCCchhheeccCCcEEEEccCCCce
Confidence 788888888888766311 11011112234688899999999999999999
Q ss_pred EEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000268 565 CVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1757)
Q Consensus 565 ~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl 612 (1757)
.+|.- .|-.+.++......|+.++..| +++.++.|+.||+|..|++
T Consensus 247 ~~fTR-~GvrLGTvg~~D~WIWtV~~~P-NsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 247 SLFTR-DGVRLGTVGEQDSWIWTVQAKP-NSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred EEEee-cCeEEeeccccceeEEEEEEcc-CCceEEEEEccCeeehhhh
Confidence 99984 6777888877888999999999 7888889999999777754
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-19 Score=197.16 Aligned_cols=302 Identities=21% Similarity=0.327 Sum_probs=229.4
Q ss_pred EccCCCCEEEEEECC-CCCEEEEEcCCceEEEEecCCCe-------EEEE--------EecCCCCeEEEEEcC-CCCEEE
Q 000268 239 VRGHRNAVYCAIFDR-SGRYVITGSDDRLVKIWSMETAY-------CLAS--------CRGHEGDITDLAVSS-NNALVA 301 (1757)
Q Consensus 239 L~GH~~~V~~VaFSP-DG~~LATGS~DGtIkIWDl~tg~-------~l~t--------L~gH~~~VtsLafSP-Dg~lLA 301 (1757)
.+-|.+.|+++.+.+ .|+++++|+.||.|.|||++... ..+. -.+|.-.|.++.|-| |..++.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 456889999999998 58999999999999999997532 1111 126888999999999 556888
Q ss_pred EEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCC
Q 000268 302 SASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRN 381 (1757)
Q Consensus 302 SgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~ 381 (1757)
+++.|.+++|||..+.+....|. -.+.|++-+++|-.....++++|..+-.|++-|+..|.+...+
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~L------------- 184 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTL------------- 184 (397)
T ss_pred cccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeee-------------
Confidence 99999999999999988777776 5688999999997655568888999999999999999876554
Q ss_pred CCCCCCCCCCCcceEEEEECCCCC-EEEEeeCCceEEEecCCCCC-CCCC---C--CCCcceeeecCCCCCceEEEEccC
Q 000268 382 MAPSSSAGPQSHQIFCCAFNANGT-VFVTGSSDTLARVWNACKPN-TDDS---D--QPNHEIDVLSGHENDVNYVQFSGC 454 (1757)
Q Consensus 382 ~~~~~~~~~~~~~V~slafSpdG~-~LasGs~DG~IrVWDl~t~~-~~~s---~--~~~~~i~~l~gH~~~V~sLafSpd 454 (1757)
.+|...|.++.|+|... .|++|+.||.|++||++... +... . .....+..-..|.+.|..++|+.+
T Consensus 185 -------sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd 257 (397)
T KOG4283|consen 185 -------SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSD 257 (397)
T ss_pred -------ccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeeccc
Confidence 47899999999999776 56889999999999998652 1100 0 111223345678999999999988
Q ss_pred ccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCce
Q 000268 455 AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQ 534 (1757)
Q Consensus 455 g~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~ 534 (1757)
+ .++++++.|..+++|+..+++..... .+++.
T Consensus 258 ~--------------------------~~l~~~gtd~r~r~wn~~~G~ntl~~----------------------~g~~~ 289 (397)
T KOG4283|consen 258 A--------------------------RYLASCGTDDRIRVWNMESGRNTLRE----------------------FGPII 289 (397)
T ss_pred c--------------------------hhhhhccCccceEEeecccCcccccc----------------------ccccc
Confidence 7 68999999999999999876521110 01111
Q ss_pred eecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000268 535 RILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1757)
Q Consensus 535 ~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl 612 (1757)
......-.+. +. +.+...++.--.++.+.++++-.|..++.+.+|...|.|.++-| +=....+|..|+.|..|-.
T Consensus 290 ~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~-~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 290 HNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRP-DFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecC-chhhhhccccCCccccccc
Confidence 1111111122 22 33444455555668999999999999999999988999999988 4456678999999999976
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.9e-19 Score=207.23 Aligned_cols=307 Identities=20% Similarity=0.257 Sum_probs=236.2
Q ss_pred EecCCCeEEEEEecCCCCeEEEEEcCCC--CEEEEEeCCceEEEEECCCC----CceEEecCCCCceEEEEecCCCCceE
Q 000268 270 WSMETAYCLASCRGHEGDITDLAVSSNN--ALVASASNDCIIRVWRLPDG----LPISVLRGHTAAVTAIAFSPRPGSVY 343 (1757)
Q Consensus 270 WDl~tg~~l~tL~gH~~~VtsLafSPDg--~lLASgS~DGtIrVWDl~tg----~~l~~l~gH~~~VtsLafSPdg~~~~ 343 (1757)
.|+.+-.....++.+.+.|++++|+|.. +++|+|..-|.|-+||+.+. .-+..+..|.++|.+|.|+|.+.+
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s-- 248 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTS-- 248 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChh--
Confidence 4555555666777889999999999954 58899999999999999532 345677889999999999998753
Q ss_pred EEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCC
Q 000268 344 QLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACK 423 (1757)
Q Consensus 344 ~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t 423 (1757)
.+++.+.||+|++-|++.+.....+.+ ......+..+.|+.+...+++|..=|...+||.++
T Consensus 249 ~i~ssSyDGtiR~~D~~~~i~e~v~s~------------------~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~ 310 (498)
T KOG4328|consen 249 QIYSSSYDGTIRLQDFEGNISEEVLSL------------------DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRT 310 (498)
T ss_pred heeeeccCceeeeeeecchhhHHHhhc------------------CccceeeeeccccCCCccEEEeecccceEEEEeec
Confidence 899999999999999987654332211 11234567788888888888888878999999987
Q ss_pred CCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCC
Q 000268 424 PNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRS 503 (1757)
Q Consensus 424 ~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~ 503 (1757)
+. .....+.-|...|..|+++|.. +..|+|++.|++++|||++.-..
T Consensus 311 ~~--------s~~~~~~lh~kKI~sv~~NP~~-------------------------p~~laT~s~D~T~kIWD~R~l~~ 357 (498)
T KOG4328|consen 311 DG--------SEYENLRLHKKKITSVALNPVC-------------------------PWFLATASLDQTAKIWDLRQLRG 357 (498)
T ss_pred CC--------ccchhhhhhhcccceeecCCCC-------------------------chheeecccCcceeeeehhhhcC
Confidence 53 3455677788899999999964 46899999999999999995220
Q ss_pred CcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECC----CCceEEEEe
Q 000268 504 HPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAA----DGSLVHSLT 579 (1757)
Q Consensus 504 ~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~----tgkll~~L~ 579 (1757)
...+......|...|.+..|||.|..|+|.+.|..|+|||.. .-.+..++.
T Consensus 358 -------------------------K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~ 412 (498)
T KOG4328|consen 358 -------------------------KASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP 412 (498)
T ss_pred -------------------------CCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee
Confidence 011345667899999999999999999999999999999983 233333333
Q ss_pred CCCC------CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCc-ceEEE-EEcCCCC-EEEEEeCCCeEE
Q 000268 580 GHTE------STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRF-RLVDG-KFSPDGA-SIILSDDVGQLY 650 (1757)
Q Consensus 580 gH~~------~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~-~Vtsl-afSPDGk-~LAsgs~DG~I~ 650 (1757)
|.. .....+|.| +..++++|-.-..|-|+|-..++.+..+..... .|.++ .|+|-+. ++|.++..|.|+
T Consensus 413 -Hn~~t~RwlT~fKA~W~P-~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~ 490 (498)
T KOG4328|consen 413 -HNNRTGRWLTPFKAAWDP-DYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIY 490 (498)
T ss_pred -ccCcccccccchhheeCC-CccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEE
Confidence 221 245678999 778889999999999999988887877654433 56654 9999988 455557789999
Q ss_pred EEECCC
Q 000268 651 ILNTGQ 656 (1757)
Q Consensus 651 IWdl~t 656 (1757)
||-...
T Consensus 491 vft~k~ 496 (498)
T KOG4328|consen 491 VFTNKK 496 (498)
T ss_pred EEecCC
Confidence 997543
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-19 Score=223.11 Aligned_cols=303 Identities=15% Similarity=0.195 Sum_probs=206.3
Q ss_pred EEec-CCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEE
Q 000268 321 SVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCA 399 (1757)
Q Consensus 321 ~~l~-gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sla 399 (1757)
+.+. .|.+.|+++.|++||+ |||+||.||.|+||.+...... ............ .......+..+.
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGK---yLAsaGeD~virVWkVie~e~~-~~~~~~~~~~~~---------~~~~~s~~~p~~ 326 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGK---YLASAGEDGVIRVWKVIESERM-RVAEGDSSCMYF---------EYNANSQIEPST 326 (712)
T ss_pred eccccccCCcEEEEEeCCCCc---eeeecCCCceEEEEEEeccchh-cccccccchhhh---------hhhhccccCccc
Confidence 4455 8999999999999998 9999999999999998763321 110000000000 000000000001
Q ss_pred ECC---CCC--EEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcc
Q 000268 400 FNA---NGT--VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 474 (1757)
Q Consensus 400 fSp---dG~--~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~ 474 (1757)
.++ .++ ..-.+..... .+..... ..-..+++..+.||.+.|..|.|+.+
T Consensus 327 s~~~~~~~~~s~~~~~~~s~~-~~~p~~~-----f~f~ekP~~ef~GHt~DILDlSWSKn-------------------- 380 (712)
T KOG0283|consen 327 SSEEKISSRTSSSRKGSQSPC-VLLPLKA-----FVFSEKPFCEFKGHTADILDLSWSKN-------------------- 380 (712)
T ss_pred cccccccccccccccccCCcc-ccCCCcc-----ccccccchhhhhccchhheecccccC--------------------
Confidence 111 000 1111111112 1121111 01124567889999999999999976
Q ss_pred cccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcC-CCC
Q 000268 475 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL-DNR 553 (1757)
Q Consensus 475 ~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSP-DG~ 553 (1757)
++|++++.|.+|++|++.... ......|..-|+||+|.| |.+
T Consensus 381 -------~fLLSSSMDKTVRLWh~~~~~------------------------------CL~~F~HndfVTcVaFnPvDDr 423 (712)
T KOG0283|consen 381 -------NFLLSSSMDKTVRLWHPGRKE------------------------------CLKVFSHNDFVTCVAFNPVDDR 423 (712)
T ss_pred -------CeeEeccccccEEeecCCCcc------------------------------eeeEEecCCeeEEEEecccCCC
Confidence 499999999999999988533 344567999999999999 788
Q ss_pred EEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeec--------C
Q 000268 554 FVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS--------R 625 (1757)
Q Consensus 554 ~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~--------~ 625 (1757)
|+++|+-||.|+||++...+.+.-...+ .-|++++|.| +|..++.|+.+|.+++|+....+....+..+ +
T Consensus 424 yFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 424 YFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSP-DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG 501 (712)
T ss_pred cEeecccccceEEeecCcCeeEeehhhh-hhheeEEecc-CCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence 9999999999999999887777655554 7799999999 6888999999999999999877776655421 2
Q ss_pred cceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCccccccccceeecCCCccEEEccCCceeecccccccCcCCCCCcccC
Q 000268 626 FRLVDGKFSPDG-ASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCD 704 (1757)
Q Consensus 626 ~~VtslafSPDG-k~LAsgs~DG~I~IWdl~tGe~~~~~~~~~~fs~D~r~Li~d~~g~vlD~~tql~phl~~l~~~L~D 704 (1757)
..|+.+.|.|.. ..|++++.|..|+|+|..+-+.+..++.-.
T Consensus 502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~------------------------------------- 544 (712)
T KOG0283|consen 502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFR------------------------------------- 544 (712)
T ss_pred ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccc-------------------------------------
Confidence 279999998754 358888999999999986544432221000
Q ss_pred CCCCCCCCcchhhhhcccccccceEECCCCCeEEEeeCCCCCCceEeeccCCc
Q 000268 705 SAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADL 757 (1757)
Q Consensus 705 ~~~~p~p~~~Q~l~~~r~~~v~~lAfSPDG~~LAvg~d~s~~~~v~l~~l~~~ 757 (1757)
.........|+.||+++.++ +.+..|.+|.+...
T Consensus 545 ----------------n~~SQ~~Asfs~Dgk~IVs~---seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 545 ----------------NTSSQISASFSSDGKHIVSA---SEDSWVYIWKNDSF 578 (712)
T ss_pred ----------------cCCcceeeeEccCCCEEEEe---ecCceEEEEeCCCC
Confidence 00012245689999999999 78889999997443
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.2e-19 Score=196.55 Aligned_cols=296 Identities=20% Similarity=0.306 Sum_probs=212.3
Q ss_pred ccCCCCEEEEEECCCCCEEEEEcCCceEEEEecC----CCeEEEEEecCCCCeEEEEEcC--CCCEEEEEeCCceEEEEE
Q 000268 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSME----TAYCLASCRGHEGDITDLAVSS--NNALVASASNDCIIRVWR 313 (1757)
Q Consensus 240 ~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~----tg~~l~tL~gH~~~VtsLafSP--Dg~lLASgS~DGtIrVWD 313 (1757)
.+|..-|.|+.|++.|+++|||+.|++|+|||.. +..+....+.|.+.|..|.|.+ -|+.||+++.|++|.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 5799999999999999999999999999999963 3456667889999999999976 689999999999999997
Q ss_pred CCC---------CCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCC
Q 000268 314 LPD---------GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 384 (1757)
Q Consensus 314 l~t---------g~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~ 384 (1757)
=.. .....++....+.|+.|.|.|..-+ ..|++++.||+|+||+.-..--+....+.......
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlG-LklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~------- 161 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLG-LKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNV------- 161 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcc-eEEEEeccCcEEEEEecCCccccccchhhhhhhhc-------
Confidence 421 1234566677889999999998644 38999999999999987654433333322211110
Q ss_pred CCCCCCCCcceEEEEECCC---CCEEEEeeCC-----ceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcc
Q 000268 385 SSSAGPQSHQIFCCAFNAN---GTVFVTGSSD-----TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAV 456 (1757)
Q Consensus 385 ~~~~~~~~~~V~slafSpd---G~~LasGs~D-----G~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~ 456 (1757)
......+.....|+.|+|. ..+||+|+.+ +.+.||..... ......+..+.+|..+|+.|+|.|+..
T Consensus 162 ~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~-----~rKw~kva~L~d~~dpI~di~wAPn~G 236 (361)
T KOG2445|consen 162 IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNEN-----GRKWLKVAELPDHTDPIRDISWAPNIG 236 (361)
T ss_pred cCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCC-----cceeeeehhcCCCCCcceeeeeccccC
Confidence 1122335566789999974 3578888866 47888876432 223556778889999999999999741
Q ss_pred ccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceee
Q 000268 457 ASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI 536 (1757)
Q Consensus 457 ~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l 536 (1757)
. .-..|++++.|| |+||.+.......... .+.. +..........+..+
T Consensus 237 r----------------------~y~~lAvA~kDg-v~I~~v~~~~s~i~~e------e~~~---~~~~~~l~v~~vs~~ 284 (361)
T KOG2445|consen 237 R----------------------SYHLLAVATKDG-VRIFKVKVARSAIEEE------EVLA---PDLMTDLPVEKVSEL 284 (361)
T ss_pred C----------------------ceeeEEEeecCc-EEEEEEeeccchhhhh------cccC---CCCccccceEEeeec
Confidence 1 125899999999 9999998533110000 0000 000001112234456
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCC---CceEEEEeC
Q 000268 537 LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD---GSLVHSLTG 580 (1757)
Q Consensus 537 ~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~t---gkll~~L~g 580 (1757)
..|.+.|..+.|.-.|..|++.+.||.|++|...- .+++..+..
T Consensus 285 ~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~ 331 (361)
T KOG2445|consen 285 DDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKA 331 (361)
T ss_pred cCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEec
Confidence 77999999999999999999999999999997632 345555543
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.4e-21 Score=231.01 Aligned_cols=257 Identities=19% Similarity=0.365 Sum_probs=215.8
Q ss_pred CCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEE
Q 000268 254 SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAI 333 (1757)
Q Consensus 254 DG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsL 333 (1757)
-+.+++.+..+-.++||+... +..|...|.++..-..++.+++|+.|..+-+|.+.....+..|.+|..+|.+|
T Consensus 3 ~~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl 76 (825)
T KOG0267|consen 3 GMEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESL 76 (825)
T ss_pred cccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceee
Confidence 344555566666788888653 34688888888887778899999999999999998877888899999999999
Q ss_pred EecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCC
Q 000268 334 AFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD 413 (1757)
Q Consensus 334 afSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~D 413 (1757)
.|++... +|++|+.+|+|++||+..++.+..+ .+|...+.++.|+|-|.++|.|+.|
T Consensus 77 ~f~~~E~---LlaagsasgtiK~wDleeAk~vrtL--------------------tgh~~~~~sv~f~P~~~~~a~gStd 133 (825)
T KOG0267|consen 77 TFDTSER---LLAAGSASGTIKVWDLEEAKIVRTL--------------------TGHLLNITSVDFHPYGEFFASGSTD 133 (825)
T ss_pred ecCcchh---hhcccccCCceeeeehhhhhhhhhh--------------------hccccCcceeeeccceEEecccccc
Confidence 9999876 8999999999999999987765544 2466778888888888888888888
Q ss_pred ceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeE
Q 000268 414 TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSA 493 (1757)
Q Consensus 414 G~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI 493 (1757)
+.+++||++... +
T Consensus 134 td~~iwD~Rk~G---------c---------------------------------------------------------- 146 (825)
T KOG0267|consen 134 TDLKIWDIRKKG---------C---------------------------------------------------------- 146 (825)
T ss_pred ccceehhhhccC---------c----------------------------------------------------------
Confidence 888888885311 1
Q ss_pred EEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCc
Q 000268 494 IIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGS 573 (1757)
Q Consensus 494 ~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgk 573 (1757)
...+.+|...|.++.|+|+|++++.|+.|..++|||+..|+
T Consensus 147 ---------------------------------------~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk 187 (825)
T KOG0267|consen 147 ---------------------------------------SHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK 187 (825)
T ss_pred ---------------------------------------eeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccc
Confidence 11122345567888999999999999999999999999999
Q ss_pred eEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCC
Q 000268 574 LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDV 646 (1757)
Q Consensus 574 ll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~D 646 (1757)
++..|.+|.+.|..+.|+| ...++++||.|++|++||+.+.+.+........+|.+++|+|+|+.+++|...
T Consensus 188 ~~~ef~~~e~~v~sle~hp-~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 188 LSKEFKSHEGKVQSLEFHP-LEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred cccccccccccccccccCc-hhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 9999999999999999999 77899999999999999999998888887777899999999999999988654
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.3e-19 Score=206.90 Aligned_cols=283 Identities=11% Similarity=0.173 Sum_probs=228.8
Q ss_pred CCCEEEEEECCCCCEEEEEcCCceEEEEecC--CCeEEEEEecCCCCeEEEEEcCCCC-EEEEEeCCceEEEEECCCCCc
Q 000268 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSME--TAYCLASCRGHEGDITDLAVSSNNA-LVASASNDCIIRVWRLPDGLP 319 (1757)
Q Consensus 243 ~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~--tg~~l~tL~gH~~~VtsLafSPDg~-lLASgS~DGtIrVWDl~tg~~ 319 (1757)
.+.|+||.|+|.-..|++|+.||+++||.+. +...++.+.--..+|.+++|.|+|. .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 5689999999999999999999999999875 3456677766788999999999999 899999999999999998864
Q ss_pred eE--EecCCC-CceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceE
Q 000268 320 IS--VLRGHT-AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF 396 (1757)
Q Consensus 320 l~--~l~gH~-~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~ 396 (1757)
.. .+.++. ..+.....+++++ +|+..|..|.|.+....++.++..+.+ .+.|.
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~---fia~~G~~G~I~lLhakT~eli~s~Ki---------------------eG~v~ 348 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSN---FIAIAGNNGHIHLLHAKTKELITSFKI---------------------EGVVS 348 (514)
T ss_pred ccccCCCCcccchhheeEecCCCC---eEEEcccCceEEeehhhhhhhhheeee---------------------ccEEe
Confidence 33 334443 4567788899987 999999999999999999988877753 45689
Q ss_pred EEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccc
Q 000268 397 CCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKN 476 (1757)
Q Consensus 397 slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~ 476 (1757)
.++|+.+|+.|++.+.+|.|.+||++... .+.. |.
T Consensus 349 ~~~fsSdsk~l~~~~~~GeV~v~nl~~~~---------~~~r------------f~------------------------ 383 (514)
T KOG2055|consen 349 DFTFSSDSKELLASGGTGEVYVWNLRQNS---------CLHR------------FV------------------------ 383 (514)
T ss_pred eEEEecCCcEEEEEcCCceEEEEecCCcc---------eEEE------------Ee------------------------
Confidence 99999999999999999999999996411 1110 00
Q ss_pred cccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEE
Q 000268 477 SWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVL 556 (1757)
Q Consensus 477 ~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~La 556 (1757)
.+|.| .-+++|.|++|.|||
T Consensus 384 ------------D~G~v------------------------------------------------~gts~~~S~ng~ylA 403 (514)
T KOG2055|consen 384 ------------DDGSV------------------------------------------------HGTSLCISLNGSYLA 403 (514)
T ss_pred ------------ecCcc------------------------------------------------ceeeeeecCCCceEE
Confidence 11111 125678899999999
Q ss_pred EEecCCeEEEEECCC------CceEEEEeCCCCCeEEEEEecCCCcEEEEEe--CCCcEEEEeCCCCceEEEEeecC---
Q 000268 557 AAIMDCRICVWNAAD------GSLVHSLTGHTESTYVLDVHPFNPRIAMSAG--YDGKTIVWDIWEGIPIRIYEISR--- 625 (1757)
Q Consensus 557 SGs~DG~I~IWDl~t------gkll~~L~gH~~~VtsLafSPdd~~lLaSgs--~DG~IrIWDl~tg~~l~~l~~~~--- 625 (1757)
+|+..|.|.|||..+ .+++..+..-...|+.|.|+| +..+||.++ .+..+++-.+.+......+....
T Consensus 404 ~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~-d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~v 482 (514)
T KOG2055|consen 404 TGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH-DAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKV 482 (514)
T ss_pred eccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc-chhhhhhhhhccccceEEEeccceeeeccCCCCCCcc
Confidence 999999999999643 567777777778899999999 777777665 57789999988877776665443
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 000268 626 FRLVDGKFSPDGASIILSDDVGQLYILNTG 655 (1757)
Q Consensus 626 ~~VtslafSPDGk~LAsgs~DG~I~IWdl~ 655 (1757)
+.|+|++|||.|.+||+|...|.|.+|.+.
T Consensus 483 g~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 483 GHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred cceEEEEecCCCceEEeecCCCceeeEeec
Confidence 368899999999999999999999999874
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.7e-19 Score=196.98 Aligned_cols=299 Identities=21% Similarity=0.293 Sum_probs=224.7
Q ss_pred ecCCCCeEEEEEcC-CCCEEEEEeCCceEEEEECCCCCc----------eE-----EecCCCCceEEEEecCCCCceEEE
Q 000268 282 RGHEGDITDLAVSS-NNALVASASNDCIIRVWRLPDGLP----------IS-----VLRGHTAAVTAIAFSPRPGSVYQL 345 (1757)
Q Consensus 282 ~gH~~~VtsLafSP-Dg~lLASgS~DGtIrVWDl~tg~~----------l~-----~l~gH~~~VtsLafSPdg~~~~~L 345 (1757)
+.|.+.|.++.+.+ .|+++++|+.||.|.|||+++... +. .-.+|.-.|.++.|-|-..+ .+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG--mF 117 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG--MF 117 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc--ee
Confidence 45889999999987 688999999999999999975420 11 11367889999999997653 79
Q ss_pred EEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCC---CCEEEEeeCCceEEEecCC
Q 000268 346 LSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN---GTVFVTGSSDTLARVWNAC 422 (1757)
Q Consensus 346 aSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpd---G~~LasGs~DG~IrVWDl~ 422 (1757)
.+++.|.++++||..+.+....+.. .+.|.+-+++|- ..+||+|..+-.|++.|+.
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~m---------------------e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~ 176 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFKM---------------------EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA 176 (397)
T ss_pred ecccccceEEEeecccceeeEEeec---------------------CceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence 9999999999999998876655542 445777778873 4578899999999999997
Q ss_pred CCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCC
Q 000268 423 KPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR 502 (1757)
Q Consensus 423 t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k 502 (1757)
+ +.....+.||.+.|.++.|+|.. .-.|++|+.||.|++||++...
T Consensus 177 S---------Gs~sH~LsGHr~~vlaV~Wsp~~-------------------------e~vLatgsaDg~irlWDiRras 222 (397)
T KOG4283|consen 177 S---------GSFSHTLSGHRDGVLAVEWSPSS-------------------------EWVLATGSADGAIRLWDIRRAS 222 (397)
T ss_pred C---------CcceeeeccccCceEEEEeccCc-------------------------eeEEEecCCCceEEEEEeeccc
Confidence 6 44678899999999999999975 2378999999999999998421
Q ss_pred CCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEe---
Q 000268 503 SHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT--- 579 (1757)
Q Consensus 503 ~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~--- 579 (1757)
. .+. .+. .... ...........|.+.|+.+||+.+|.++++++.|..+++|+..+|+-...-.
T Consensus 223 g-----cf~-~lD--~hn~------k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~ 288 (397)
T KOG4283|consen 223 G-----CFR-VLD--QHNT------KRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPI 288 (397)
T ss_pred c-----eeE-Eee--cccC------ccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccc
Confidence 0 000 000 0000 0011122345688999999999999999999999999999998875322110
Q ss_pred CCCCC----eEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 000268 580 GHTES----TYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 654 (1757)
Q Consensus 580 gH~~~----VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl 654 (1757)
.|... +. +. +- +...++---.++.+.++++-+|..++.+.+|-..|.+.+|-|+-+.+.+++.|+.|+.|-.
T Consensus 289 ~~n~~~~~~~~-~~-~~-~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 289 IHNQTTSFAVH-IQ-SM-DSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cccccccceEE-Ee-ec-ccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 11111 11 11 22 2233333445689999999999999999999788999999999999999999999999986
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.6e-20 Score=223.03 Aligned_cols=286 Identities=18% Similarity=0.300 Sum_probs=221.9
Q ss_pred CEEEEEECCCCCEEEEEcCCceEEEEecCCC----eEEEEEecC---CCCeEEEEEcC-CCCEEEEEeCCceEEEEECCC
Q 000268 245 AVYCAIFDRSGRYVITGSDDRLVKIWSMETA----YCLASCRGH---EGDITDLAVSS-NNALVASASNDCIIRVWRLPD 316 (1757)
Q Consensus 245 ~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg----~~l~tL~gH---~~~VtsLafSP-Dg~lLASgS~DGtIrVWDl~t 316 (1757)
...+|...++-..|+.++. ..++|+.+... .+...+++. .-.+..|.|.. +.++||+++..|.|.+||+..
T Consensus 41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 3456667788888888775 46788876432 222222211 12345667764 456999999999999999986
Q ss_pred ---CCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCc
Q 000268 317 ---GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 393 (1757)
Q Consensus 317 ---g~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~ 393 (1757)
.+.+..|..|...|+++.|++... ++|++|+.||+|++||++...-...+ .+...
T Consensus 120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep--~iliSGSQDg~vK~~DlR~~~S~~t~--------------------~~nSE 177 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHERSANKLDFHSTEP--NILISGSQDGTVKCWDLRSKKSKSTF--------------------RSNSE 177 (839)
T ss_pred cccchhhhHhhhhccceeeeeeccCCc--cEEEecCCCceEEEEeeecccccccc--------------------cccch
Confidence 567778899999999999999765 58999999999999999877644433 23566
Q ss_pred ceEEEEECC-CCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCC
Q 000268 394 QIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 472 (1757)
Q Consensus 394 ~V~slafSp-dG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~ 472 (1757)
.|..+.|+| .+..|+++...|.+.+||++. +.+....+.+|.++|.++.|+|+.
T Consensus 178 SiRDV~fsp~~~~~F~s~~dsG~lqlWDlRq--------p~r~~~k~~AH~GpV~c~nwhPnr----------------- 232 (839)
T KOG0269|consen 178 SIRDVKFSPGYGNKFASIHDSGYLQLWDLRQ--------PDRCEKKLTAHNGPVLCLNWHPNR----------------- 232 (839)
T ss_pred hhhceeeccCCCceEEEecCCceEEEeeccC--------chhHHHHhhcccCceEEEeecCCC-----------------
Confidence 789999999 678999999999999999974 455777899999999999999986
Q ss_pred cccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCC
Q 000268 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN 552 (1757)
Q Consensus 473 ~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG 552 (1757)
.+||||+.|+.|+||++.+.+.. .........+|.+|.|-|..
T Consensus 233 ---------~~lATGGRDK~vkiWd~t~~~~~----------------------------~~~tInTiapv~rVkWRP~~ 275 (839)
T KOG0269|consen 233 ---------EWLATGGRDKMVKIWDMTDSRAK----------------------------PKHTINTIAPVGRVKWRPAR 275 (839)
T ss_pred ---------ceeeecCCCccEEEEeccCCCcc----------------------------ceeEEeecceeeeeeeccCc
Confidence 79999999999999999863311 12233455789999999988
Q ss_pred CE-EEEEe--cCCeEEEEECCCC-ceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 000268 553 RF-VLAAI--MDCRICVWNAADG-SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG 615 (1757)
Q Consensus 553 ~~-LaSGs--~DG~I~IWDl~tg-kll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg 615 (1757)
++ |++++ .|-.|+|||++.. -+.+++..|...++.++|-..+..++.+++.||+|..-.+.++
T Consensus 276 ~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 276 SYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred cchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 76 44444 4778999999764 4567899999999999997766788899999998876655544
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-18 Score=215.70 Aligned_cols=285 Identities=17% Similarity=0.241 Sum_probs=223.3
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCC-CceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecC
Q 000268 282 RGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG-LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360 (1757)
Q Consensus 282 ~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg-~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~ 360 (1757)
.+|..+.+.|+|.|+|.+|++++.||.|++|+.... ..-.++..+...|.+++.... +|++|+.+++|.+|.+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~-----~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN-----HFLTGSEQNTVLRYKFP 84 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc-----ceEEeeccceEEEeeCC
Confidence 368999999999999999999999999999987655 333344447788888877553 79999999999999988
Q ss_pred CCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeec
Q 000268 361 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLS 440 (1757)
Q Consensus 361 tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~ 440 (1757)
.+..-..+ ....-++.+++|+.+|.++|.|+.|-.|++.++.. ......+.
T Consensus 85 s~~~~~iL--------------------~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D---------~s~~~~lr 135 (933)
T KOG1274|consen 85 SGEEDTIL--------------------ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDD---------SSQEKVLR 135 (933)
T ss_pred CCCcccee--------------------eeeeccceEEEEecCCcEEEeecCceeEEEEeccc---------cchheeec
Confidence 77543222 12345689999999999999999999999999865 34567889
Q ss_pred CCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCC
Q 000268 441 GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPP 520 (1757)
Q Consensus 441 gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~ 520 (1757)
+|..+|.+|.|.|.+ .+||+.+.||.|+||++.++............
T Consensus 136 gh~apVl~l~~~p~~--------------------------~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~------- 182 (933)
T KOG1274|consen 136 GHDAPVLQLSYDPKG--------------------------NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKD------- 182 (933)
T ss_pred ccCCceeeeeEcCCC--------------------------CEEEEEecCceEEEEEcccchhhhhcccCCcc-------
Confidence 999999999999987 79999999999999999975532211110000
Q ss_pred CCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeC--CCCCeEEEEEecCCCcEE
Q 000268 521 PPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTG--HTESTYVLDVHPFNPRIA 598 (1757)
Q Consensus 521 ~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~g--H~~~VtsLafSPdd~~lL 598 (1757)
. -......++.++|+|+|..+++.+.|+.|++|+..++.....|.. +...+.+++|+| .|.+|
T Consensus 183 ---------n-----~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP-nG~Yi 247 (933)
T KOG1274|consen 183 ---------N-----EFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP-NGKYI 247 (933)
T ss_pred ---------c-----cccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC-CCcEE
Confidence 0 001134577899999999999999999999999999998887753 444589999999 78999
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEE
Q 000268 599 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYIL 652 (1757)
Q Consensus 599 aSgs~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IW 652 (1757)
|+++.||.|.|||+.+-.. ......|++++|-|++.-|-.....|...+|
T Consensus 248 AAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 248 AASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred eeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 9999999999999987222 2234579999999999877766665554444
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-18 Score=214.96 Aligned_cols=272 Identities=13% Similarity=0.223 Sum_probs=212.8
Q ss_pred cCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCC-eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCc
Q 000268 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA-YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLP 319 (1757)
Q Consensus 241 GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg-~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~ 319 (1757)
+|+..-+.|+|.|+|.+|.|++.||.|++|+...- ..-.++..+...|.+++.. +.+|++|+.+++|.+|.+..+..
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCc
Confidence 68999999999999999999999999999987655 3333343477778887765 45899999999999999999877
Q ss_pred eEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEE
Q 000268 320 ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCA 399 (1757)
Q Consensus 320 l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sla 399 (1757)
-..+...+-++.+++|+.+|. ++|.|+.|-.|++.++.+......+ .+|.++|.++.
T Consensus 89 ~~iL~Rftlp~r~~~v~g~g~---~iaagsdD~~vK~~~~~D~s~~~~l--------------------rgh~apVl~l~ 145 (933)
T KOG1274|consen 89 DTILARFTLPIRDLAVSGSGK---MIAAGSDDTAVKLLNLDDSSQEKVL--------------------RGHDAPVLQLS 145 (933)
T ss_pred cceeeeeeccceEEEEecCCc---EEEeecCceeEEEEeccccchheee--------------------cccCCceeeee
Confidence 666666778999999999998 9999999999999999877654443 46899999999
Q ss_pred ECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCC-CCCceEEEEccCccccccccccCCCCCCCCcccccc
Q 000268 400 FNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH-ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478 (1757)
Q Consensus 400 fSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH-~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~ 478 (1757)
|+|.+.+||+.+.||.|+||++.++........... ..... ...+.-++|+|++
T Consensus 146 ~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k--~n~~~~s~i~~~~aW~Pk~----------------------- 200 (933)
T KOG1274|consen 146 YDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDK--DNEFILSRICTRLAWHPKG----------------------- 200 (933)
T ss_pred EcCCCCEEEEEecCceEEEEEcccchhhhhcccCCc--cccccccceeeeeeecCCC-----------------------
Confidence 999999999999999999999976544322211111 11111 4456778999986
Q ss_pred cCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEE
Q 000268 479 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA 558 (1757)
Q Consensus 479 ~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSG 558 (1757)
..|+..+.|+.|++|+..+ |...+.+. ...+...+..++|||+|+|||++
T Consensus 201 ---g~la~~~~d~~Vkvy~r~~---------we~~f~Lr------------------~~~~ss~~~~~~wsPnG~YiAAs 250 (933)
T KOG1274|consen 201 ---GTLAVPPVDNTVKVYSRKG---------WELQFKLR------------------DKLSSSKFSDLQWSPNGKYIAAS 250 (933)
T ss_pred ---CeEEeeccCCeEEEEccCC---------ceeheeec------------------ccccccceEEEEEcCCCcEEeee
Confidence 5888899999999998875 33333322 12234458999999999999999
Q ss_pred ecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCc
Q 000268 559 IMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR 596 (1757)
Q Consensus 559 s~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~ 596 (1757)
+.||.|.|||..+-.. ......|.+++|.|+.+.
T Consensus 251 ~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~ 284 (933)
T KOG1274|consen 251 TLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANA 284 (933)
T ss_pred ccCCcEEEEecccchh----ccccceeEEEecCCCCCe
Confidence 9999999999987222 223457999999996553
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-16 Score=191.79 Aligned_cols=344 Identities=27% Similarity=0.470 Sum_probs=261.4
Q ss_pred ccccccce-eEEEEccCCC-CEEEEEE-CCCCC-EEEEEcC-CceEEEEecCC-CeEEEEEecCCCCeEEEEEcCCCCEE
Q 000268 227 STMVQKMQ-NIKRVRGHRN-AVYCAIF-DRSGR-YVITGSD-DRLVKIWSMET-AYCLASCRGHEGDITDLAVSSNNALV 300 (1757)
Q Consensus 227 ~~~~~~~k-~l~tL~GH~~-~V~~VaF-SPDG~-~LATGS~-DGtIkIWDl~t-g~~l~tL~gH~~~VtsLafSPDg~lL 300 (1757)
.|...... .+..+.++.. .+..+.+ ++++. +++..+. |+.+.+|++.. +.....+..|...|.+++|+|++.++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 170 (466)
T COG2319 91 LWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLL 170 (466)
T ss_pred EEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEE
Confidence 34433343 6777777554 7888888 88888 5555444 99999999998 88888999999999999999999999
Q ss_pred EEEeC-CceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccC
Q 000268 301 ASASN-DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAG 379 (1757)
Q Consensus 301 ASgS~-DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g 379 (1757)
++++. ++.+++|++.++..+..+.+|...|.+++|+|++. ..+++++.|+.|.+||...+.....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~d~~i~~wd~~~~~~~~~------------ 236 (466)
T COG2319 171 ASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG--LLIASGSSDGTIRLWDLSTGKLLRS------------ 236 (466)
T ss_pred EecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcc--eEEEEecCCCcEEEEECCCCcEEee------------
Confidence 88886 99999999999999999999999999999998875 2455559999999998775544331
Q ss_pred CCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccc
Q 000268 380 RNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASR 459 (1757)
Q Consensus 380 ~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~ 459 (1757)
....|.... ...|++++.++++++.++.+++|++..... .+..+.+|...|.++.|.|++
T Consensus 237 -------~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~---- 296 (466)
T COG2319 237 -------TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--------LLRTLSGHSSSVLSVAFSPDG---- 296 (466)
T ss_pred -------ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--------EEEEEecCCccEEEEEECCCC----
Confidence 012233333 228999998899999999999999965321 233336788999999999854
Q ss_pred cccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCC
Q 000268 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT 539 (1757)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h 539 (1757)
..+++++.|+.+.+|+..+...... .....|
T Consensus 297 ----------------------~~~~~~~~d~~~~~~~~~~~~~~~~---------------------------~~~~~~ 327 (466)
T COG2319 297 ----------------------KLLASGSSDGTVRLWDLETGKLLSS---------------------------LTLKGH 327 (466)
T ss_pred ----------------------CEEEEeeCCCcEEEEEcCCCceEEE---------------------------eeeccc
Confidence 5677788889999998775321100 002245
Q ss_pred CCCeeEEEEcCCCCEEEEE-ecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEE-EeCCCcEEEEeCCCCce
Q 000268 540 PRGVNMIVWSLDNRFVLAA-IMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMS-AGYDGKTIVWDIWEGIP 617 (1757)
Q Consensus 540 ~~~VtsVafSPDG~~LaSG-s~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaS-gs~DG~IrIWDl~tg~~ 617 (1757)
...+..+.|.+++..++.+ ..|+.+.+|+............+.. +..+.+++ + ..+++ +..++.+.+|+......
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~ 404 (466)
T COG2319 328 EGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSL 404 (466)
T ss_pred CCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCce-EEEEEECC-C-CCEEEEecCCCceEEEecccCee
Confidence 5568888884343556655 6889999999988773333333332 88999998 7 55554 78999999999998888
Q ss_pred EEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 000268 618 IRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 656 (1757)
Q Consensus 618 l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~t 656 (1757)
...+......+..+.+++++..++.++.++.+.+|+..+
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 405 LRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred eeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 777764437889999999999999999999999999877
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.1e-20 Score=225.06 Aligned_cols=238 Identities=23% Similarity=0.409 Sum_probs=207.6
Q ss_pred EEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCC
Q 000268 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPD 316 (1757)
Q Consensus 237 ~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~t 316 (1757)
+.+..|...|.|+..-..++.+++|+.|..+-+|.+..-..+..|.+|..+|.+|.|++...+|++|+.+|+|++||++.
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 45667999999999988899999999999999999988777888999999999999999999999999999999999999
Q ss_pred CCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceE
Q 000268 317 GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF 396 (1757)
Q Consensus 317 g~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~ 396 (1757)
++.+++|.||...+..+.|+|-+. ++++|+.|+.+++||++...|...+ .+|...|.
T Consensus 102 Ak~vrtLtgh~~~~~sv~f~P~~~---~~a~gStdtd~~iwD~Rk~Gc~~~~--------------------~s~~~vv~ 158 (825)
T KOG0267|consen 102 AKIVRTLTGHLLNITSVDFHPYGE---FFASGSTDTDLKIWDIRKKGCSHTY--------------------KSHTRVVD 158 (825)
T ss_pred hhhhhhhhccccCcceeeeccceE---EeccccccccceehhhhccCceeee--------------------cCCcceeE
Confidence 999999999999999999999986 8899999999999999866655544 34777899
Q ss_pred EEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccc
Q 000268 397 CCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKN 476 (1757)
Q Consensus 397 slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~ 476 (1757)
++.|+|+|++++.|+.|..++|||... ++.+..+.+|.+.|.++.|.|..
T Consensus 159 ~l~lsP~Gr~v~~g~ed~tvki~d~~a---------gk~~~ef~~~e~~v~sle~hp~e--------------------- 208 (825)
T KOG0267|consen 159 VLRLSPDGRWVASGGEDNTVKIWDLTA---------GKLSKEFKSHEGKVQSLEFHPLE--------------------- 208 (825)
T ss_pred EEeecCCCceeeccCCcceeeeecccc---------cccccccccccccccccccCchh---------------------
Confidence 999999999999999999999999965 45677889999999999998864
Q ss_pred cccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEE
Q 000268 477 SWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVL 556 (1757)
Q Consensus 477 ~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~La 556 (1757)
-.+++|+.|+++++||+++-.. +........+|.+++|+|+|..++
T Consensus 209 -----~Lla~Gs~d~tv~f~dletfe~-----------------------------I~s~~~~~~~v~~~~fn~~~~~~~ 254 (825)
T KOG0267|consen 209 -----VLLAPGSSDRTVRFWDLETFEV-----------------------------ISSGKPETDGVRSLAFNPDGKIVL 254 (825)
T ss_pred -----hhhccCCCCceeeeeccceeEE-----------------------------eeccCCccCCceeeeecCCceeee
Confidence 3678999999999999996221 111222356799999999999999
Q ss_pred EEecC
Q 000268 557 AAIMD 561 (1757)
Q Consensus 557 SGs~D 561 (1757)
+|...
T Consensus 255 ~G~q~ 259 (825)
T KOG0267|consen 255 SGEQI 259 (825)
T ss_pred cCchh
Confidence 88765
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-17 Score=199.09 Aligned_cols=155 Identities=17% Similarity=0.226 Sum_probs=123.1
Q ss_pred cCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCC-CCEEEE
Q 000268 479 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD-NRFVLA 557 (1757)
Q Consensus 479 ~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPD-G~~LaS 557 (1757)
|+...|++++.||.|++|.+..+.. ......+...+..|...|+++.|.|- ...|++
T Consensus 638 FD~~rLAVa~ddg~i~lWr~~a~gl----------------------~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~ 695 (1012)
T KOG1445|consen 638 FDDERLAVATDDGQINLWRLTANGL----------------------PENEMTPEKILTIHGEKITSLRFHPLAADVLAV 695 (1012)
T ss_pred CChHHeeecccCceEEEEEeccCCC----------------------CcccCCcceeeecccceEEEEEecchhhhHhhh
Confidence 4567999999999999999875331 11223455677889999999999984 457889
Q ss_pred EecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc-eEEEEeecC-cceEEEEEcC
Q 000268 558 AIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI-PIRIYEISR-FRLVDGKFSP 635 (1757)
Q Consensus 558 Gs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~-~l~~l~~~~-~~VtslafSP 635 (1757)
++.|.+|++||+.+++....|.+|++.|..++||| +++.+++.+.||+|+||+-.++. +++.-.+.. ..-..+.|.-
T Consensus 696 asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wac 774 (1012)
T KOG1445|consen 696 ASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWAC 774 (1012)
T ss_pred hhccceeeeeehhhhhhhheeccCcCceeEEEECC-CCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEe
Confidence 99999999999999999999999999999999999 78899999999999999987764 333222111 2334678999
Q ss_pred CCCEEEEEeCC----CeEEEEECCC
Q 000268 636 DGASIILSDDV----GQLYILNTGQ 656 (1757)
Q Consensus 636 DGk~LAsgs~D----G~I~IWdl~t 656 (1757)
||++|++.+-| .+|.+|+..+
T Consensus 775 dgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 775 DGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred cCcEEEEecccccchhhhhhhhhhh
Confidence 99999987554 4788888765
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.9e-18 Score=196.01 Aligned_cols=309 Identities=18% Similarity=0.230 Sum_probs=226.6
Q ss_pred cccceeEEEEccCCCCEEEEEECCCC--CEEEEEcCCceEEEEecCCC----eEEEEEecCCCCeEEEEEcCCC-CEEEE
Q 000268 230 VQKMQNIKRVRGHRNAVYCAIFDRSG--RYVITGSDDRLVKIWSMETA----YCLASCRGHEGDITDLAVSSNN-ALVAS 302 (1757)
Q Consensus 230 ~~~~k~l~tL~GH~~~V~~VaFSPDG--~~LATGS~DGtIkIWDl~tg----~~l~tL~gH~~~VtsLafSPDg-~lLAS 302 (1757)
+.........+-|.+.|+|++|+|.. ++||+|..-|+|-+||+.+. .-+..+..|.++|.+|.|+|.+ ..+++
T Consensus 173 l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~s 252 (498)
T KOG4328|consen 173 LDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYS 252 (498)
T ss_pred cccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheee
Confidence 34455666778899999999999975 47889999999999999522 3355677899999999999955 48889
Q ss_pred EeCCceEEEEECCCCCce--EEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCC
Q 000268 303 ASNDCIIRVWRLPDGLPI--SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGR 380 (1757)
Q Consensus 303 gS~DGtIrVWDl~tg~~l--~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~ 380 (1757)
.+.||+|++-|++++..- ..+......+.++.|+.+.. .++.+..=|.+.+||++++.-...
T Consensus 253 sSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~---~vl~~~~~G~f~~iD~R~~~s~~~------------- 316 (498)
T KOG4328|consen 253 SSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESR---SVLFGDNVGNFNVIDLRTDGSEYE------------- 316 (498)
T ss_pred eccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCc---cEEEeecccceEEEEeecCCccch-------------
Confidence 999999999999887443 33333556778888888776 677777778999999998753211
Q ss_pred CCCCCCCCCCCCcceEEEEECCC-CCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccc
Q 000268 381 NMAPSSSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASR 459 (1757)
Q Consensus 381 ~~~~~~~~~~~~~~V~slafSpd-G~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~ 459 (1757)
....|...|.+++++|- ..+||+++.|++++|||++.-....+ ++.....|...|.+..|+|.+
T Consensus 317 ------~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s-----p~lst~~HrrsV~sAyFSPs~---- 381 (498)
T KOG4328|consen 317 ------NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS-----PFLSTLPHRRSVNSAYFSPSG---- 381 (498)
T ss_pred ------hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC-----cceecccccceeeeeEEcCCC----
Confidence 12235668999999994 46899999999999999986332111 245567899999999999987
Q ss_pred cccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCC
Q 000268 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT 539 (1757)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h 539 (1757)
..|+|.+.|..|+|||..- +..|... ...+..-..+
T Consensus 382 ----------------------gtl~TT~~D~~IRv~dss~------~sa~~~p----------------~~~I~Hn~~t 417 (498)
T KOG4328|consen 382 ----------------------GTLLTTCQDNEIRVFDSSC------ISAKDEP----------------LGTIPHNNRT 417 (498)
T ss_pred ----------------------CceEeeccCCceEEeeccc------ccccCCc----------------cceeeccCcc
Confidence 3599999999999999751 0001000 0001111111
Q ss_pred CC--CeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCC-CeEE-EEEecCCCcEEEEEeCCCcEEEEeCC
Q 000268 540 PR--GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTE-STYV-LDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1757)
Q Consensus 540 ~~--~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~-~Vts-LafSPdd~~lLaSgs~DG~IrIWDl~ 613 (1757)
.. .....+|.|+..+|++|..-..|-|+|...++.+..+..... .|.+ ..|||-+..+++.++..|.|.||--.
T Consensus 418 ~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 418 GRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 11 133458999999999999999999999998988888765443 4555 48999655576666778888888643
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.5e-18 Score=191.06 Aligned_cols=294 Identities=17% Similarity=0.212 Sum_probs=211.7
Q ss_pred eEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccce
Q 000268 288 ITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPR 367 (1757)
Q Consensus 288 VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~ 367 (1757)
..|+.|++.|.+||+|+.||.|.|||+.|...-+.+.+|..+|++++||++|. .|++++.|..|.+||+..|.++.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr---~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGR---KLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCC---EeeeecCCceeEEEeccCCCceeE
Confidence 78999999999999999999999999999998899999999999999999997 999999999999999999998888
Q ss_pred eecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCC-EEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCC-CCC
Q 000268 368 IYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT-VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH-END 445 (1757)
Q Consensus 368 i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~-~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH-~~~ 445 (1757)
+.+ ...|+.+.|+|... .+++.-.+..-.+.++..+. ...+... .+.
T Consensus 103 irf---------------------~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~----------h~~Lp~d~d~d 151 (405)
T KOG1273|consen 103 IRF---------------------DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK----------HSVLPKDDDGD 151 (405)
T ss_pred EEc---------------------cCccceeeeccccCCeEEEEEecCCcEEEEecCCc----------eeeccCCCccc
Confidence 864 44588889998543 33332233333333332110 0000000 000
Q ss_pred c----eEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCC
Q 000268 446 V----NYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPP 521 (1757)
Q Consensus 446 V----~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~ 521 (1757)
. .+..|.+. +.++++|...|.+.++|..+.++...
T Consensus 152 ln~sas~~~fdr~--------------------------g~yIitGtsKGkllv~~a~t~e~vas--------------- 190 (405)
T KOG1273|consen 152 LNSSASHGVFDRR--------------------------GKYIITGTSKGKLLVYDAETLECVAS--------------- 190 (405)
T ss_pred cccccccccccCC--------------------------CCEEEEecCcceEEEEecchheeeee---------------
Confidence 0 00112222 47999999999999999987432111
Q ss_pred CCCCCCCCCCCceeecC-CCCCeeEEEEcCCCCEEEEEecCCeEEEEECCC-------Cce--EEEEeC--CCCCeEEEE
Q 000268 522 PMPPQPPRGGPRQRILP-TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD-------GSL--VHSLTG--HTESTYVLD 589 (1757)
Q Consensus 522 ~~~~~~~~~~~~~~l~~-h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~t-------gkl--l~~L~g--H~~~VtsLa 589 (1757)
+.- ....|..+.|+..|++|+.-+.|..|+.|++.. |++ .+.+.. ..-.=.+++
T Consensus 191 --------------~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~cc 256 (405)
T KOG1273|consen 191 --------------FRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCC 256 (405)
T ss_pred --------------eeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhee
Confidence 111 135688899999999999999999999999863 111 122110 011224678
Q ss_pred EecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecC-cceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccccccccee
Q 000268 590 VHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISR-FRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQF 668 (1757)
Q Consensus 590 fSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~-~~VtslafSPDGk~LAsgs~DG~I~IWdl~tGe~~~~~~~~~~ 668 (1757)
|+.++..++++...-..++||.-..|.+++.+.+.. ....++.|.|-...|++- ..|.|+||...+ .+.-.+
T Consensus 257 fs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~------~enwsa 329 (405)
T KOG1273|consen 257 FSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ------VENWSA 329 (405)
T ss_pred ecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeec------ccchhh
Confidence 888444455444566789999999999999999777 467899999999888887 669999999754 334457
Q ss_pred ecCCCccEE
Q 000268 669 FLGDYRPLV 677 (1757)
Q Consensus 669 fs~D~r~Li 677 (1757)
|+||++.|.
T Consensus 330 fAPdFqele 338 (405)
T KOG1273|consen 330 FAPDFQELE 338 (405)
T ss_pred cCchHHHHH
Confidence 888888763
|
|
| >cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.6e-19 Score=184.01 Aligned_cols=124 Identities=45% Similarity=0.735 Sum_probs=112.6
Q ss_pred cccCcCcccCCCCCCCCCCCChhhHHHHHHHHHHHHhhhcccccccccccccccc-cCCCccccCCCCCCHHHHHHHhhh
Q 000268 1621 HLHSPWELFDSDTQWEQPRIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVS-QKTNFTNRFPVPLSLDVIQSRLEN 1699 (1757)
Q Consensus 1621 ~rvSPWEiep~~~~~~~p~~~~~~r~kLls~l~kle~~~~~~~~~~~~~~~~~~~-~~~~y~~~i~~Pmdl~tI~~Rlen 1699 (1757)
...|+|++..+. |..|.+.++.+++++..+.++... ......+.|..+++.. ..|+||++|++||||+||++||++
T Consensus 4 ~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~l~~l~~~-~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~ 80 (128)
T cd05529 4 PLSSEWELFDPG--WEQPHIRDEERERLISGLDKLLLS-LQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLEN 80 (128)
T ss_pred CCCCchhccccc--CcCCCCCHHHHHHHHHHHHHHHhc-ccCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhc
Confidence 456999987665 899999999999999999999754 2456677888888888 899999999999999999999999
Q ss_pred cccCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHhCC
Q 000268 1700 NYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1747 (1757)
Q Consensus 1700 ~~Yr~~~~~~~Dv~~i~~Na~~fn~~~s~i~~~a~~l~~~~~~~l~~~ 1747 (1757)
++|+++++|..||++|+.||++||++++.++.+|+.|+++|.+.|+.+
T Consensus 81 ~~Y~s~~~f~~Dv~Li~~Na~~yN~~~s~i~~~A~~l~~~~~~~l~~~ 128 (128)
T cd05529 81 RYYRSLEALRHDVRLILSNAETFNEPNSEIAKKAKRLSDWLLRILSSL 128 (128)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999998753
|
WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.1e-19 Score=216.96 Aligned_cols=283 Identities=18% Similarity=0.252 Sum_probs=204.9
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEE
Q 000268 276 YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355 (1757)
Q Consensus 276 ~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIr 355 (1757)
+.++.|.||...|+|++|...|.+|++|+.|..|+||.++++.+++.+.||.+.|+.++.+..+. .+++++.|..|+
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~---~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNT---MIAAASNDKVIR 257 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhh---hhhhcccCceEE
Confidence 44556779999999999999999999999999999999999999999999999999999998875 899999999999
Q ss_pred EEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcc
Q 000268 356 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHE 435 (1757)
Q Consensus 356 IWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~ 435 (1757)
+|.+.++..+..+ .+|.+.|++++|+|-. +.+.||++++||.+-........+.+
T Consensus 258 vWrl~~~~pvsvL--------------------rghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~- 312 (1113)
T KOG0644|consen 258 VWRLPDGAPVSVL--------------------RGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLK- 312 (1113)
T ss_pred EEecCCCchHHHH--------------------hccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCC-
Confidence 9999988765554 4689999999999964 67789999999986110000000000
Q ss_pred eeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCccccccccccc
Q 000268 436 IDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYH 515 (1757)
Q Consensus 436 i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~ 515 (1757)
+. ....+.++.|...+ ..++||+.|+....|.+.
T Consensus 313 ---~~-~~~~~~s~~~~~~~--------------------------~~f~Tgs~d~ea~n~e~~---------------- 346 (1113)
T KOG0644|consen 313 ---FT-EKDLVDSILFENNG--------------------------DRFLTGSRDGEARNHEFE---------------- 346 (1113)
T ss_pred ---cc-cccceeeeeccccc--------------------------cccccccCCcccccchhh----------------
Confidence 00 01222333333222 345555555555444322
Q ss_pred ccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCC
Q 000268 516 LKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNP 595 (1757)
Q Consensus 516 l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~ 595 (1757)
+++|...+-.+++++. +-.
T Consensus 347 -----------------------------~l~~~~~~lif~t~ss--------------------------------d~~ 365 (1113)
T KOG0644|consen 347 -----------------------------QLAWRSNLLIFVTRSS--------------------------------DLS 365 (1113)
T ss_pred -----------------------------HhhhhccceEEEeccc--------------------------------ccc
Confidence 1122222222222221 122
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEEeecCcceEEEEEcCCCCEEE-EEeCCCeEEEEECCCCcccc------cccccee
Q 000268 596 RIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASII-LSDDVGQLYILNTGQGESQK------DAKYDQF 668 (1757)
Q Consensus 596 ~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LA-sgs~DG~I~IWdl~tGe~~~------~~~~~~~ 668 (1757)
.+.+++-.+..+++|++.+|.+++.+.+|...+..+.|+|-...++ +++.||.+.|||+..|.+++ ....+..
T Consensus 366 ~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~k 445 (1113)
T KOG0644|consen 366 SIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGK 445 (1113)
T ss_pred ccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccc
Confidence 4556677788899999999999999999999999999999887777 68999999999999997765 2335669
Q ss_pred ecCCCccEE-EccCCceeeccccccc
Q 000268 669 FLGDYRPLV-QDTYGNVLDQETQLAP 693 (1757)
Q Consensus 669 fs~D~r~Li-~d~~g~vlD~~tql~p 693 (1757)
|++||..++ .+.+|.++-..+.+..
T Consensus 446 FSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 446 FSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred cCCCCceEecCCCCCceEEeccCCCc
Confidence 999999877 6777776655555443
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-17 Score=195.50 Aligned_cols=287 Identities=17% Similarity=0.200 Sum_probs=215.0
Q ss_pred CCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCC--ccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCC
Q 000268 327 TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ--FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG 404 (1757)
Q Consensus 327 ~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~--~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG 404 (1757)
.+.|++|.|+|... .|++++.||+++||.+.... .++.+ .-...+|.+++|.|+|
T Consensus 213 ~~~I~sv~FHp~~p---lllvaG~d~~lrifqvDGk~N~~lqS~--------------------~l~~fPi~~a~f~p~G 269 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP---LLLVAGLDGTLRIFQVDGKVNPKLQSI--------------------HLEKFPIQKAEFAPNG 269 (514)
T ss_pred cCCceEEEecCCCc---eEEEecCCCcEEEEEecCccChhheee--------------------eeccCccceeeecCCC
Confidence 47899999999887 99999999999999886432 22222 2245668999999999
Q ss_pred C-EEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCC-CCceEEEEccCccccccccccCCCCCCCCcccccccCCC
Q 000268 405 T-VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE-NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHD 482 (1757)
Q Consensus 405 ~-~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~-~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1757)
. .+++++....++.||+.+.+.. .+..+.++. ..+....+++++ +
T Consensus 270 ~~~i~~s~rrky~ysyDle~ak~~-------k~~~~~g~e~~~~e~FeVShd~--------------------------~ 316 (514)
T KOG2055|consen 270 HSVIFTSGRRKYLYSYDLETAKVT-------KLKPPYGVEEKSMERFEVSHDS--------------------------N 316 (514)
T ss_pred ceEEEecccceEEEEeeccccccc-------cccCCCCcccchhheeEecCCC--------------------------C
Confidence 8 8999999999999999775432 233334443 356677778876 6
Q ss_pred cEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCC
Q 000268 483 NIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC 562 (1757)
Q Consensus 483 ~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG 562 (1757)
.|+..+..|.|.+....++... ......+.|..++|+.||+.|++.+.+|
T Consensus 317 fia~~G~~G~I~lLhakT~eli------------------------------~s~KieG~v~~~~fsSdsk~l~~~~~~G 366 (514)
T KOG2055|consen 317 FIAIAGNNGHIHLLHAKTKELI------------------------------TSFKIEGVVSDFTFSSDSKELLASGGTG 366 (514)
T ss_pred eEEEcccCceEEeehhhhhhhh------------------------------heeeeccEEeeEEEecCCcEEEEEcCCc
Confidence 8999999999999877764321 1122346789999999999999999999
Q ss_pred eEEEEECCCCceEEEEeCCCC-CeEEEEEecCCCcEEEEEeCCCcEEEEeCCC------CceEEEEeecCcceEEEEEcC
Q 000268 563 RICVWNAADGSLVHSLTGHTE-STYVLDVHPFNPRIAMSAGYDGKTIVWDIWE------GIPIRIYEISRFRLVDGKFSP 635 (1757)
Q Consensus 563 ~I~IWDl~tgkll~~L~gH~~-~VtsLafSPdd~~lLaSgs~DG~IrIWDl~t------g~~l~~l~~~~~~VtslafSP 635 (1757)
.|++||+....+++.+....+ .-+.++.++ ++.+||+|+..|.|.|||..+ .+++..+..-...|++++|+|
T Consensus 367 eV~v~nl~~~~~~~rf~D~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~ 445 (514)
T KOG2055|consen 367 EVYVWNLRQNSCLHRFVDDGSVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH 445 (514)
T ss_pred eEEEEecCCcceEEEEeecCccceeeeeecC-CCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc
Confidence 999999999999998874322 124567777 778999999999999999654 467777766677899999999
Q ss_pred CCCEEEEEeC--CCeEEEEECCCCccccccccceeecCCCccEEEccCCceeecccccccCcCCCCCcccCCCCCCCCCc
Q 000268 636 DGASIILSDD--VGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEP 713 (1757)
Q Consensus 636 DGk~LAsgs~--DG~I~IWdl~tGe~~~~~~~~~~fs~D~r~Li~d~~g~vlD~~tql~phl~~l~~~L~D~~~~p~p~~ 713 (1757)
|++.||.++. ...+++..+.+-...... |..
T Consensus 446 d~qiLAiaS~~~knalrLVHvPS~TVFsNf-----------------------------------------------P~~ 478 (514)
T KOG2055|consen 446 DAQILAIASRVKKNALRLVHVPSCTVFSNF-----------------------------------------------PTS 478 (514)
T ss_pred chhhhhhhhhccccceEEEeccceeeeccC-----------------------------------------------CCC
Confidence 9999998754 456666665432111100 000
Q ss_pred chhhhhcccccccceEECCCCCeEEEeeCCCCCCceEeeccC
Q 000268 714 YQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLA 755 (1757)
Q Consensus 714 ~Q~l~~~r~~~v~~lAfSPDG~~LAvg~d~s~~~~v~l~~l~ 755 (1757)
-. ...-+.+++|||.|.+||+| +..+.+.+|.|.
T Consensus 479 n~-----~vg~vtc~aFSP~sG~lAvG---Ne~grv~l~kL~ 512 (514)
T KOG2055|consen 479 NT-----KVGHVTCMAFSPNSGYLAVG---NEAGRVHLFKLH 512 (514)
T ss_pred CC-----cccceEEEEecCCCceEEee---cCCCceeeEeec
Confidence 00 01236799999999999999 888999999874
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.8e-18 Score=192.33 Aligned_cols=267 Identities=16% Similarity=0.285 Sum_probs=196.8
Q ss_pred ecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECC
Q 000268 323 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA 402 (1757)
Q Consensus 323 l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSp 402 (1757)
...|.+.|..+..++-++. .+.++-+..|.|.||++...- ..+ ..+..........+.....+|...-+.++|||
T Consensus 147 ~i~h~g~~NRvr~~~~~~~-~~~aswse~G~V~Vw~l~~~l--~~l--~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp 221 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNE-VLCASWSENGRVQVWDLAPHL--NAL--SEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSP 221 (440)
T ss_pred ccccccccceeeecccCCc-ceeeeecccCcEEEEEchhhh--hhh--cCccccccccccCceEEecccCccceeeeccc
Confidence 3467788888887777643 377888889999999986421 111 11111111233445556677888899999999
Q ss_pred CC-CEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCC
Q 000268 403 NG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCH 481 (1757)
Q Consensus 403 dG-~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~ 481 (1757)
-. ..|++|..-+.|++|...++.-. .....+.+|+..|..++|+|.- .
T Consensus 222 ~~~g~LlsGDc~~~I~lw~~~~g~W~------vd~~Pf~gH~~SVEDLqWSptE-------------------------~ 270 (440)
T KOG0302|consen 222 IKTGRLLSGDCVKGIHLWEPSTGSWK------VDQRPFTGHTKSVEDLQWSPTE-------------------------D 270 (440)
T ss_pred ccccccccCccccceEeeeeccCcee------ecCccccccccchhhhccCCcc-------------------------C
Confidence 32 34888888889999998764321 1223467799999999999975 4
Q ss_pred CcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecC
Q 000268 482 DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD 561 (1757)
Q Consensus 482 ~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~D 561 (1757)
..|++||.||+|+|||++.+. .........|...|+.|.|+.+-.+||+|+.|
T Consensus 271 ~vfaScS~DgsIrIWDiRs~~---------------------------~~~~~~~kAh~sDVNVISWnr~~~lLasG~Dd 323 (440)
T KOG0302|consen 271 GVFASCSCDGSIRIWDIRSGP---------------------------KKAAVSTKAHNSDVNVISWNRREPLLASGGDD 323 (440)
T ss_pred ceEEeeecCceEEEEEecCCC---------------------------ccceeEeeccCCceeeEEccCCcceeeecCCC
Confidence 689999999999999999643 11223346788899999999999999999999
Q ss_pred CeEEEEECCC---CceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc----------------eEEEEe
Q 000268 562 CRICVWNAAD---GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI----------------PIRIYE 622 (1757)
Q Consensus 562 G~I~IWDl~t---gkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~----------------~l~~l~ 622 (1757)
|+++|||++. ++++..|+.|..+|++|.|+|.....|+++|.|..|.|||+..-. +-+.+.
T Consensus 324 Gt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLF 403 (440)
T KOG0302|consen 324 GTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLF 403 (440)
T ss_pred ceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEE
Confidence 9999999975 678999999999999999999888999999999999999985321 111222
Q ss_pred e--cCcceEEEEEcCCCC-EEEEEeCCCeEEEEE
Q 000268 623 I--SRFRLVDGKFSPDGA-SIILSDDVGQLYILN 653 (1757)
Q Consensus 623 ~--~~~~VtslafSPDGk-~LAsgs~DG~I~IWd 653 (1757)
. +...|-.+.|++.-. +|++.+.|| +.||.
T Consensus 404 VHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 404 VHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred EecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 2 344677899998754 555556655 55554
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-17 Score=184.73 Aligned_cols=285 Identities=15% Similarity=0.219 Sum_probs=213.5
Q ss_pred ccccccccccccCCccccccCCcchhhhccccccCccccccc-eeE-EEEccCCCCEEEEEECCCCCEEEEEcCCceEEE
Q 000268 192 ADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKM-QNI-KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKI 269 (1757)
Q Consensus 192 ~~~V~~l~~r~~Gg~~~~~~~~~~l~s~~~~~a~~~~~~~~~-k~l-~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkI 269 (1757)
.+.|..+.|.+... .-+.+.++......|.++.- ..+ +....|.++|.|++|+.||..+++|+.|+.+++
T Consensus 27 ~DsIS~l~FSP~~~--------~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~ 98 (347)
T KOG0647|consen 27 EDSISALAFSPQAD--------NLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKL 98 (347)
T ss_pred ccchheeEeccccC--------ceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEE
Confidence 46777777776221 12234456666666766652 221 456679999999999999999999999999999
Q ss_pred EecCCCeEEEEEecCCCCeEEEEEcCCCC--EEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEE
Q 000268 270 WSMETAYCLASCRGHEGDITDLAVSSNNA--LVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLS 347 (1757)
Q Consensus 270 WDl~tg~~l~tL~gH~~~VtsLafSPDg~--lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaS 347 (1757)
||+.+++ +..+..|.++|.++.|-+... .|++|+.|.+|+.||++...++.++. -...|+++..-.. .+++
T Consensus 99 wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~~p-----m~vV 171 (347)
T KOG0647|consen 99 WDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVLYP-----MAVV 171 (347)
T ss_pred EEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhccCc-----eeEE
Confidence 9999995 556677999999999988665 89999999999999999999988876 4566777766543 7889
Q ss_pred EeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCC
Q 000268 348 SSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTD 427 (1757)
Q Consensus 348 gs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~ 427 (1757)
+..+..|.+|+++.+...... ...+...++.|++...+....|.|+-.|.+.|..+..+..
T Consensus 172 ata~r~i~vynL~n~~te~k~------------------~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~- 232 (347)
T KOG0647|consen 172 ATAERHIAVYNLENPPTEFKR------------------IESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP- 232 (347)
T ss_pred EecCCcEEEEEcCCCcchhhh------------------hcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-
Confidence 999999999999766432221 1123466789999999998889999999999998854221
Q ss_pred CCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCccc
Q 000268 428 DSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKA 507 (1757)
Q Consensus 428 ~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~ 507 (1757)
+.-..+..|...-. .++ .|
T Consensus 233 ------~~nFtFkCHR~~~~-----------------------------------------~~~--~V------------ 251 (347)
T KOG0647|consen 233 ------KDNFTFKCHRSTNS-----------------------------------------VND--DV------------ 251 (347)
T ss_pred ------cCceeEEEeccCCC-----------------------------------------CCC--ce------------
Confidence 11122222321000 000 11
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEE
Q 000268 508 ARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYV 587 (1757)
Q Consensus 508 ~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~Vts 587 (1757)
..|++|+|.|....|++++.||++.+||-.....+.+...|..+|++
T Consensus 252 ---------------------------------YaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItc 298 (347)
T KOG0647|consen 252 ---------------------------------YAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITC 298 (347)
T ss_pred ---------------------------------EEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccce
Confidence 25788999999999999999999999999888888888899999999
Q ss_pred EEEecCCCcEEEEEeCC
Q 000268 588 LDVHPFNPRIAMSAGYD 604 (1757)
Q Consensus 588 LafSPdd~~lLaSgs~D 604 (1757)
..|+.++..++.+.|.|
T Consensus 299 c~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 299 CSFNRNGSIFAYALGYD 315 (347)
T ss_pred eEecCCCCEEEEEeecc
Confidence 99999555555555655
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-17 Score=201.12 Aligned_cols=264 Identities=20% Similarity=0.343 Sum_probs=189.4
Q ss_pred EEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEE--EecCCCCeEEEEEcCCCC-EEEEEeCCceEEEE
Q 000268 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLAS--CRGHEGDITDLAVSSNNA-LVASASNDCIIRVW 312 (1757)
Q Consensus 236 l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~t--L~gH~~~VtsLafSPDg~-lLASgS~DGtIrVW 312 (1757)
++....|.++|..+.|-|....|++++.|.+|++||+.+++++.. +.||.+.|.++||.|.+. .+++|+.||.|.||
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 455678999999999999667899999999999999999998877 889999999999999765 77899999999999
Q ss_pred ECCCCC--------------------c-------eEEecCCCCceEE---EEecCCCCceEEEEEEeC-CCcEEEEecCC
Q 000268 313 RLPDGL--------------------P-------ISVLRGHTAAVTA---IAFSPRPGSVYQLLSSSD-DGTCRIWDARY 361 (1757)
Q Consensus 313 Dl~tg~--------------------~-------l~~l~gH~~~Vts---LafSPdg~~~~~LaSgs~-DGtIrIWDl~t 361 (1757)
|+.-.. + +.....+...|.+ +.+..|.. .||+++. |+.|+|||++.
T Consensus 173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~---tlaSaga~D~~iKVWDLRk 249 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES---TLASAGAADSTIKVWDLRK 249 (720)
T ss_pred EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc---eeeeccCCCcceEEEeecc
Confidence 984211 1 1111234444444 44444544 7898888 99999999997
Q ss_pred CCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecC
Q 000268 362 SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG 441 (1757)
Q Consensus 362 g~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~g 441 (1757)
........- . +. ............+.++.....|.+|++.+.|+.|++|++.+.. ..++..+.+
T Consensus 250 ~~~~~r~ep---~----~~--~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s-------~sP~~~~sg 313 (720)
T KOG0321|consen 250 NYTAYRQEP---R----GS--DKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLS-------ISPVAEFSG 313 (720)
T ss_pred cccccccCC---C----cc--cCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccC-------cCchhhccC
Confidence 765433210 0 00 0011112235568889999899999999999999999997532 223333444
Q ss_pred CCCCceEE--EEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCC
Q 000268 442 HENDVNYV--QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVP 519 (1757)
Q Consensus 442 H~~~V~sL--afSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~ 519 (1757)
+...-..+ ..+|+ +..+++|+.|..+.+|.+.+..
T Consensus 314 ~~~~sf~vks~lSpd--------------------------~~~l~SgSsd~~ayiw~vs~~e----------------- 350 (720)
T KOG0321|consen 314 KLNSSFYVKSELSPD--------------------------DCSLLSGSSDEQAYIWVVSSPE----------------- 350 (720)
T ss_pred cccceeeeeeecCCC--------------------------CceEeccCCCcceeeeeecCcc-----------------
Confidence 43222211 12343 3689999999999999988522
Q ss_pred CCCCCCCCCCCCCceeecCCCCCeeEEEEcCCC-CEEEEEecCCeEEEEECCCC
Q 000268 520 PPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN-RFVLAAIMDCRICVWNAADG 572 (1757)
Q Consensus 520 ~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG-~~LaSGs~DG~I~IWDl~tg 572 (1757)
.+...+.+|...|++++|.|.. .-+++++.|.+++||++..+
T Consensus 351 -----------~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 351 -----------APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred -----------CChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 2334567888999999998743 34777799999999999664
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.3e-18 Score=186.20 Aligned_cols=311 Identities=17% Similarity=0.238 Sum_probs=218.2
Q ss_pred eEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCceEEEEE
Q 000268 235 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1757)
Q Consensus 235 ~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~-gH~~~VtsLafSPDg~lLASgS~DGtIrVWD 313 (1757)
+...|++|.+.|+|+.|..+++ |.+|..-|.|++|++++.+.+..++ .|...|+.+...|+ ..|.+-+.|+.+.+|+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence 4567889999999999998886 8999999999999999999888888 57788999999987 4677888999999999
Q ss_pred CCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCC-cEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCC
Q 000268 314 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDG-TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1757)
Q Consensus 314 l~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DG-tIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~ 392 (1757)
+.-+..+. -|.-.++++.|++.. ++..+... .+-+++-+............. ...........+..
T Consensus 84 ia~s~~i~---i~Si~~nslgFCrfS-----l~~~~k~~eqll~yp~rgsde~h~~D~g~~-----tqv~i~dd~~~~Kl 150 (323)
T KOG0322|consen 84 IAYSAFIS---IHSIVVNSLGFCRFS-----LVKKPKNSEQLLEYPSRGSDETHKQDGGDT-----TQVQIADDSERSKL 150 (323)
T ss_pred ccCcceEE---Eeeeeccccccccce-----eccCCCcchhheecCCcccchhhhhccCcc-----ceeEccCchhcccc
Confidence 97755443 355667777777642 22222221 122222211111000000000 00001112223455
Q ss_pred cceEEEEECC-CCC--EEEEeeCCceEEEecCCCCCCC-CCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCC
Q 000268 393 HQIFCCAFNA-NGT--VFVTGSSDTLARVWNACKPNTD-DSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 468 (1757)
Q Consensus 393 ~~V~slafSp-dG~--~LasGs~DG~IrVWDl~t~~~~-~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~ 468 (1757)
+.++|..+.. ++. ++++|..+|.|.+||+.++... ...+..+.......|..+|.++.|.+..
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~------------- 217 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC------------- 217 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh-------------
Confidence 6677777543 333 5678889999999999775211 1122334555667899999999998542
Q ss_pred CCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEE
Q 000268 469 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 548 (1757)
Q Consensus 469 ~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVaf 548 (1757)
+.=++|+.+..+..|.+.-... .-.....+.....+|..+.+
T Consensus 218 -------------~rGisgga~dkl~~~Sl~~s~g-------------------------slq~~~e~~lknpGv~gvrI 259 (323)
T KOG0322|consen 218 -------------DRGISGGADDKLVMYSLNHSTG-------------------------SLQIRKEITLKNPGVSGVRI 259 (323)
T ss_pred -------------cCCcCCCccccceeeeeccccC-------------------------cccccceEEecCCCccceEE
Confidence 3456777788888888763210 00111122334456888999
Q ss_pred cCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000268 549 SLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1757)
Q Consensus 549 SPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl 612 (1757)
-||++.+|+++.|++|+||..+++.++..|+.|.+.|++++|+| +..++|+|+.|++|.+|++
T Consensus 260 RpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 260 RPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKL 322 (323)
T ss_pred ccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence 99999999999999999999999999999999999999999999 6678899999999999987
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-17 Score=190.57 Aligned_cols=213 Identities=19% Similarity=0.318 Sum_probs=175.7
Q ss_pred EEEccCCCCEEEEEECCCCC--EEEEEcCCceEEEEecCC----------------CeEEEEEecCCCCeEEEEEcCCC-
Q 000268 237 KRVRGHRNAVYCAIFDRSGR--YVITGSDDRLVKIWSMET----------------AYCLASCRGHEGDITDLAVSSNN- 297 (1757)
Q Consensus 237 ~tL~GH~~~V~~VaFSPDG~--~LATGS~DGtIkIWDl~t----------------g~~l~tL~gH~~~VtsLafSPDg- 297 (1757)
...-+|.+.|+.+..++-|+ +.|+=+..|.|+||++.. .+.+.++.+|.+.=+.|+|||-.
T Consensus 145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~ 224 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT 224 (440)
T ss_pred ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc
Confidence 34557888898888888664 555667889999999742 35678889999999999999932
Q ss_pred CEEEEEeCCceEEEEECCCCCce---EEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCC
Q 000268 298 ALVASASNDCIIRVWRLPDGLPI---SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPS 374 (1757)
Q Consensus 298 ~lLASgS~DGtIrVWDl~tg~~l---~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~ 374 (1757)
..|++|..-+.|++|...+|.-. ..+.+|+..|-.|+|||...+ .|++|+.||+|+|||++.+.....+.
T Consensus 225 g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~--vfaScS~DgsIrIWDiRs~~~~~~~~----- 297 (440)
T KOG0302|consen 225 GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG--VFASCSCDGSIRIWDIRSGPKKAAVS----- 297 (440)
T ss_pred cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc--eEEeeecCceEEEEEecCCCccceeE-----
Confidence 25889988899999999887432 346679999999999998763 89999999999999999885444332
Q ss_pred ccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccC
Q 000268 375 DAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 454 (1757)
Q Consensus 375 ~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpd 454 (1757)
...|...|..|.|+..-.+||+|+.||+++|||++.- +..+++..+..|..+|++|.|+|.
T Consensus 298 -------------~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~------~~~~pVA~fk~Hk~pItsieW~p~ 358 (440)
T KOG0302|consen 298 -------------TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQF------KSGQPVATFKYHKAPITSIEWHPH 358 (440)
T ss_pred -------------eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhc------cCCCcceeEEeccCCeeEEEeccc
Confidence 2457889999999998889999999999999999864 345788999999999999999986
Q ss_pred ccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCC
Q 000268 455 AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 500 (1757)
Q Consensus 455 g~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t 500 (1757)
- ...|++++.|.+|.|||+..
T Consensus 359 e-------------------------~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 359 E-------------------------DSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred c-------------------------CceEEeccCCCcEEEEEeec
Confidence 4 35889999999999999984
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.8e-17 Score=181.46 Aligned_cols=272 Identities=15% Similarity=0.201 Sum_probs=203.8
Q ss_pred cCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECC-
Q 000268 324 RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA- 402 (1757)
Q Consensus 324 ~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSp- 402 (1757)
.+|..-|+++.|.+.|. .+++|+.|++|+|||.+...-.. ........|.+.|..+.|.+
T Consensus 10 s~h~DlihdVs~D~~GR---RmAtCSsDq~vkI~d~~~~s~~W----------------~~Ts~Wrah~~Si~rV~WAhP 70 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGR---RMATCSSDQTVKIWDSTSDSGTW----------------SCTSSWRAHDGSIWRVVWAHP 70 (361)
T ss_pred cCCcceeeeeeecccCc---eeeeccCCCcEEEEeccCCCCce----------------EEeeeEEecCCcEEEEEecCc
Confidence 47889999999999997 99999999999999976543221 12233456889999999976
Q ss_pred -CCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCC
Q 000268 403 -NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCH 481 (1757)
Q Consensus 403 -dG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~ 481 (1757)
-|+.+|+++.|+++.||.-.................+......|+.|+|.|.-.+
T Consensus 71 EfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlG------------------------ 126 (361)
T KOG2445|consen 71 EFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLG------------------------ 126 (361)
T ss_pred cccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcc------------------------
Confidence 5899999999999999986432222233345566778888899999999987432
Q ss_pred CcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCC---CCEEEEE
Q 000268 482 DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD---NRFVLAA 558 (1757)
Q Consensus 482 ~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPD---G~~LaSG 558 (1757)
=.+++++.||.++||+.-. ......|.-...+..-.. ....+.....||.|+|. ..+||+|
T Consensus 127 LklA~~~aDG~lRIYEA~d---p~nLs~W~Lq~Ei~~~~~-------------pp~~~~~~~~CvsWn~sr~~~p~iAvg 190 (361)
T KOG2445|consen 127 LKLAAASADGILRIYEAPD---PMNLSQWTLQHEIQNVID-------------PPGKNKQPCFCVSWNPSRMHEPLIAVG 190 (361)
T ss_pred eEEEEeccCcEEEEEecCC---ccccccchhhhhhhhccC-------------CcccccCcceEEeeccccccCceEEEE
Confidence 3789999999999998764 223344543332221110 11124456778899863 3578888
Q ss_pred ecC-----CeEEEEECCCC----ceEEEEeCCCCCeEEEEEecCCC---cEEEEEeCCCcEEEEeCCCC-----------
Q 000268 559 IMD-----CRICVWNAADG----SLVHSLTGHTESTYVLDVHPFNP---RIAMSAGYDGKTIVWDIWEG----------- 615 (1757)
Q Consensus 559 s~D-----G~I~IWDl~tg----kll~~L~gH~~~VtsLafSPdd~---~lLaSgs~DG~IrIWDl~tg----------- 615 (1757)
+.+ +.++||....+ ..+.+|.+|..+|++|+|.|.-+ .+||+|+.|| |+||.+...
T Consensus 191 s~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~ 269 (361)
T KOG2445|consen 191 SDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLA 269 (361)
T ss_pred cccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccC
Confidence 876 47889877543 24557889999999999999655 5889999999 999998731
Q ss_pred ---------ceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 000268 616 ---------IPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 655 (1757)
Q Consensus 616 ---------~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~ 655 (1757)
+.+..+..|++.|..+.|.-.|..|+++++||.|++|...
T Consensus 270 ~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 270 PDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred CCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 2344566788999999999999999999999999999864
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-15 Score=191.32 Aligned_cols=440 Identities=16% Similarity=0.215 Sum_probs=277.1
Q ss_pred EccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCC---EEEEEeCCceEEEEECC
Q 000268 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA---LVASASNDCIIRVWRLP 315 (1757)
Q Consensus 239 L~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~---lLASgS~DGtIrVWDl~ 315 (1757)
|.|-...-....||+|+++|+.... ..|+||.+.||.++..+.+|...++.+.+.|... ++++++.+|.|++||..
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~ 90 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCTG-NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS 90 (792)
T ss_pred eccccceecccccccCCcEEEEeeC-CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence 4444444455679999999887764 5899999999999999999999999999988544 67899999999999999
Q ss_pred CCCceEEecCCCCceEEEEecCC----CC-------ceEEEEE--EeCCCcEEEEecCCCC-----cccee-----ecCC
Q 000268 316 DGLPISVLRGHTAAVTAIAFSPR----PG-------SVYQLLS--SSDDGTCRIWDARYSQ-----FSPRI-----YIPR 372 (1757)
Q Consensus 316 tg~~l~~l~gH~~~VtsLafSPd----g~-------~~~~LaS--gs~DGtIrIWDl~tg~-----~~~~i-----~l~~ 372 (1757)
.+..+.++..+ ..|..+.+.|. .. ....+.+ ...-++++-+.+.+.. ..... ....
T Consensus 91 ~~~Llkt~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~ 169 (792)
T KOG1963|consen 91 DGELLKTFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDN 169 (792)
T ss_pred CcEEEEEEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEc
Confidence 99888777533 22333322110 00 0001111 1111111112111100 00000 0000
Q ss_pred CCcccc----------------CCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcce
Q 000268 373 PSDAVA----------------GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 436 (1757)
Q Consensus 373 ~~~~~~----------------g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i 436 (1757)
+..... .+..........|...++|.+++|+++++|+|..||.|.+|.--.. .......
T Consensus 170 ~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~-----~~~~~t~ 244 (792)
T KOG1963|consen 170 NSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS-----SDDSETC 244 (792)
T ss_pred CCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc-----ccccccc
Confidence 000000 0111111222345555899999999999999999999999975321 1112344
Q ss_pred eeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccc
Q 000268 437 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHL 516 (1757)
Q Consensus 437 ~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l 516 (1757)
..+.-|...|.+++|+++| .+|++|+..|.+.+|.+.+++
T Consensus 245 t~lHWH~~~V~~L~fS~~G--------------------------~~LlSGG~E~VLv~Wq~~T~~-------------- 284 (792)
T KOG1963|consen 245 TLLHWHHDEVNSLSFSSDG--------------------------AYLLSGGREGVLVLWQLETGK-------------- 284 (792)
T ss_pred eEEEecccccceeEEecCC--------------------------ceEeecccceEEEEEeecCCC--------------
Confidence 5677899999999999997 699999999999999988744
Q ss_pred cCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCC-----------CCCe
Q 000268 517 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH-----------TEST 585 (1757)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH-----------~~~V 585 (1757)
.+-+..-...|..+.+|||+.+.+....|..|.+....+.....++.|- .+-.
T Consensus 285 ----------------kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~ 348 (792)
T KOG1963|consen 285 ----------------KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLT 348 (792)
T ss_pred ----------------cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccc
Confidence 1112224567999999999999999999999999988776554444332 3346
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee-----------cCcceEEEEEcCCCCEEEEEe--------C-
Q 000268 586 YVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEI-----------SRFRLVDGKFSPDGASIILSD--------D- 645 (1757)
Q Consensus 586 tsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~-----------~~~~VtslafSPDGk~LAsgs--------~- 645 (1757)
+.+++.| ....++-.+.-|.|.+||+.+...+..+.. +.-.++.++++-.|.++++.. .
T Consensus 349 t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~ 427 (792)
T KOG1963|consen 349 TGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFD 427 (792)
T ss_pred eeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccC
Confidence 7788888 555666778999999999998877766541 122577888899999999862 2
Q ss_pred -CCeEEEEECCCCcccccc-----------ccc-eeecCCCc-cEEEccCCceeecccccccCcCCCCCcccCCCCCCCC
Q 000268 646 -VGQLYILNTGQGESQKDA-----------KYD-QFFLGDYR-PLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYP 711 (1757)
Q Consensus 646 -DG~I~IWdl~tGe~~~~~-----------~~~-~~fs~D~r-~Li~d~~g~vlD~~tql~phl~~l~~~L~D~~~~p~p 711 (1757)
.-.+++|.......--.+ -.. .++.+.-. ..+....++.+- +|.+..|....+..
T Consensus 428 ~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~K-----------iW~~~~~~n~~k~~ 496 (792)
T KOG1963|consen 428 GEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFK-----------IWVFTDDSNIYKKS 496 (792)
T ss_pred ceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEE-----------EEEEecccccCcCc
Confidence 236778876543221100 011 12222211 222222222110 12222222222222
Q ss_pred Ccchhhhh--cccccccceEECCCCCeEEEeeCCCCCCceEeeccCCc
Q 000268 712 EPYQTMYQ--QRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADL 757 (1757)
Q Consensus 712 ~~~Q~l~~--~r~~~v~~lAfSPDG~~LAvg~d~s~~~~v~l~~l~~~ 757 (1757)
..+....- -+...+.+++||.||..||++ .+..+.+|+....
T Consensus 497 s~W~c~~i~sy~k~~i~a~~fs~dGslla~s----~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 497 SNWTCKAIGSYHKTPITALCFSQDGSLLAVS----FDDTITIWDYDTK 540 (792)
T ss_pred cceEEeeeeccccCcccchhhcCCCcEEEEe----cCCEEEEecCCCh
Confidence 22221111 145678899999999999999 8899999998763
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.4e-17 Score=185.94 Aligned_cols=309 Identities=19% Similarity=0.283 Sum_probs=218.1
Q ss_pred CCCEEEEEECCCCC-EEEEEcCCceEEEEecCCC---------eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEE
Q 000268 243 RNAVYCAIFDRSGR-YVITGSDDRLVKIWSMETA---------YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1757)
Q Consensus 243 ~~~V~~VaFSPDG~-~LATGS~DGtIkIWDl~tg---------~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVW 312 (1757)
..+|+.+.|.+... +||||+.|..|+||-+..+ +.+..|..|...|+++.|+|+|.+||+|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 46799999999877 9999999999999987532 2345677899999999999999999999999999999
Q ss_pred ECC--------C--------CCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCcc
Q 000268 313 RLP--------D--------GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDA 376 (1757)
Q Consensus 313 Dl~--------t--------g~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~ 376 (1757)
-.. + ......+.+|...|+.++|+|++. ++++++.|..+++||+..|.....+
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~---~l~s~s~dns~~l~Dv~~G~l~~~~-------- 161 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN---FLVSGSVDNSVRLWDVHAGQLLAIL-------- 161 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc---eeeeeeccceEEEEEeccceeEeec--------
Confidence 765 2 123456789999999999999997 9999999999999999999865544
Q ss_pred ccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCc-eEEEEccCc
Q 000268 377 VAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDV-NYVQFSGCA 455 (1757)
Q Consensus 377 ~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V-~sLafSpdg 455 (1757)
..|...+..++|.|-++++++-+.|...+++.+... .....|...+ .+.++.+.
T Consensus 162 ------------~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~------------~~~~~~~~~~m~~~~~~~~- 216 (434)
T KOG1009|consen 162 ------------DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLK------------QVIKRHGLDIMPAKAFNER- 216 (434)
T ss_pred ------------cccccccceeecchhhhhhhhhccCcccceeeeeee------------eeeeeeeeeEeeecccCCC-
Confidence 358888999999999999999998887777766321 1111111100 00001100
Q ss_pred cccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCcee
Q 000268 456 VASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR 535 (1757)
Q Consensus 456 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~ 535 (1757)
.....+++.=+|.
T Consensus 217 ---------------------------------e~~s~rLfhDeTl---------------------------------- 229 (434)
T KOG1009|consen 217 ---------------------------------EGKSTRLFHDETL---------------------------------- 229 (434)
T ss_pred ---------------------------------CcceeeeeecCch----------------------------------
Confidence 0111223322210
Q ss_pred ecCCCCCeeEEEEcCCCCEEEEEec----C-----CeEEEEECCC-CceEEEEeCCCCCeEEEEEecC------------
Q 000268 536 ILPTPRGVNMIVWSLDNRFVLAAIM----D-----CRICVWNAAD-GSLVHSLTGHTESTYVLDVHPF------------ 593 (1757)
Q Consensus 536 l~~h~~~VtsVafSPDG~~LaSGs~----D-----G~I~IWDl~t-gkll~~L~gH~~~VtsLafSPd------------ 593 (1757)
..-...++|+|||.+|++... . +..++|+-.. .++...+.+....+..+.|+|-
T Consensus 230 ----ksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~ 305 (434)
T KOG1009|consen 230 ----KSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKF 305 (434)
T ss_pred ----hhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEecccccccc
Confidence 112345678888888887431 1 2234554332 2344455555555556655541
Q ss_pred -----CCcEEEEEeCCCcEEEEeCCCCceEEEEe-ecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc
Q 000268 594 -----NPRIAMSAGYDGKTIVWDIWEGIPIRIYE-ISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGES 659 (1757)
Q Consensus 594 -----d~~lLaSgs~DG~IrIWDl~tg~~l~~l~-~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~tGe~ 659 (1757)
-+.++|.++ -..|.|||..+-.++.... .|-..|++++|++||..|+.++.||...+.-++..+.
T Consensus 306 ~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 306 LFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred ccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 122344444 5579999999888877664 4667899999999999999999999988888876554
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.2e-18 Score=208.42 Aligned_cols=244 Identities=19% Similarity=0.349 Sum_probs=192.8
Q ss_pred EEEEEECC-CCCEEEEEcCCceEEEEecCC---CeEEEEEecCCCCeEEEEEcCC-CCEEEEEeCCceEEEEECCCCCce
Q 000268 246 VYCAIFDR-SGRYVITGSDDRLVKIWSMET---AYCLASCRGHEGDITDLAVSSN-NALVASASNDCIIRVWRLPDGLPI 320 (1757)
Q Consensus 246 V~~VaFSP-DG~~LATGS~DGtIkIWDl~t---g~~l~tL~gH~~~VtsLafSPD-g~lLASgS~DGtIrVWDl~tg~~l 320 (1757)
+..|.|.. +.++|||++..|.|.+||+.. .+++..|..|...|.++.|++. ..+|++|+.||+|++||++.....
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence 34456653 567999999999999999976 5666778899999999999985 458999999999999999999999
Q ss_pred EEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEE
Q 000268 321 SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 400 (1757)
Q Consensus 321 ~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slaf 400 (1757)
.++.+....|..|+|+|... +.|+++...|.+++||++....-. ..+..|.+.|.|+.|
T Consensus 170 ~t~~~nSESiRDV~fsp~~~--~~F~s~~dsG~lqlWDlRqp~r~~-------------------~k~~AH~GpV~c~nw 228 (839)
T KOG0269|consen 170 STFRSNSESIRDVKFSPGYG--NKFASIHDSGYLQLWDLRQPDRCE-------------------KKLTAHNGPVLCLNW 228 (839)
T ss_pred ccccccchhhhceeeccCCC--ceEEEecCCceEEEeeccCchhHH-------------------HHhhcccCceEEEee
Confidence 99999999999999999764 489999999999999998654221 123468999999999
Q ss_pred CCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccC
Q 000268 401 NANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFC 480 (1757)
Q Consensus 401 SpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~ 480 (1757)
+|++.+||+||.|+.|+||++.++.. ..+.+ .....+|..|.|-|.-
T Consensus 229 hPnr~~lATGGRDK~vkiWd~t~~~~-------~~~~t-InTiapv~rVkWRP~~------------------------- 275 (839)
T KOG0269|consen 229 HPNREWLATGGRDKMVKIWDMTDSRA-------KPKHT-INTIAPVGRVKWRPAR------------------------- 275 (839)
T ss_pred cCCCceeeecCCCccEEEEeccCCCc-------cceeE-EeecceeeeeeeccCc-------------------------
Confidence 99999999999999999999965321 11111 1234578899999874
Q ss_pred CCcEEEEcC--CCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcC-CCCEEEE
Q 000268 481 HDNIVTCSR--DGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL-DNRFVLA 557 (1757)
Q Consensus 481 ~~~LvSgS~--DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSP-DG~~LaS 557 (1757)
...|++++. |-.|.|||++- ..-|...+..|...++.++|.. |-..|.+
T Consensus 276 ~~hLAtcsmv~dtsV~VWDvrR----------------------------PYIP~~t~~eH~~~vt~i~W~~~d~~~l~s 327 (839)
T KOG0269|consen 276 SYHLATCSMVVDTSVHVWDVRR----------------------------PYIPYATFLEHTDSVTGIAWDSGDRINLWS 327 (839)
T ss_pred cchhhhhhccccceEEEEeecc----------------------------ccccceeeeccCccccceeccCCCceeeEe
Confidence 246777654 88899999983 1234566778889999999965 4557788
Q ss_pred EecCCeEEEEECCC
Q 000268 558 AIMDCRICVWNAAD 571 (1757)
Q Consensus 558 Gs~DG~I~IWDl~t 571 (1757)
++.||+|..-.+++
T Consensus 328 ~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 328 CSKDGTVLQHLFKN 341 (839)
T ss_pred ecCccHHHHhhhhc
Confidence 88888776555444
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8e-17 Score=181.62 Aligned_cols=311 Identities=18% Similarity=0.268 Sum_probs=219.6
Q ss_pred EccCCCCEEEEEECC-----CCCEEEEEcCCceEEEEecCCC---eEEEEEe--cCCCCeEEEEEcCC----CCEEEEEe
Q 000268 239 VRGHRNAVYCAIFDR-----SGRYVITGSDDRLVKIWSMETA---YCLASCR--GHEGDITDLAVSSN----NALVASAS 304 (1757)
Q Consensus 239 L~GH~~~V~~VaFSP-----DG~~LATGS~DGtIkIWDl~tg---~~l~tL~--gH~~~VtsLafSPD----g~lLASgS 304 (1757)
..+|..+|+.++|.+ .-..+||.+. ..|.||..... +.++++. .|......++|+-+ +.+||+|+
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 457899999999985 3356777665 46888877532 3334333 36778888999864 34899999
Q ss_pred CCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCC
Q 000268 305 NDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 384 (1757)
Q Consensus 305 ~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~ 384 (1757)
.-|.|+|.|+.++++...+.+|...|..|.|+|+.. .+|++++.|.+|++|++.+..++..+-
T Consensus 113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~--qlvls~SkD~svRlwnI~~~~Cv~VfG--------------- 175 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRP--QLVLSASKDHSVRLWNIQTDVCVAVFG--------------- 175 (385)
T ss_pred ceeEEEEEecchhhhccceeccCccchhhhcCCCCC--cEEEEecCCceEEEEeccCCeEEEEec---------------
Confidence 999999999999999999999999999999999865 489999999999999999998877662
Q ss_pred CCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCC------CC-------------cceeeecCCCCC
Q 000268 385 SSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQ------PN-------------HEIDVLSGHEND 445 (1757)
Q Consensus 385 ~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~------~~-------------~~i~~l~gH~~~ 445 (1757)
...+|...|.++.|+++|.+|++++.|.+|++|++..+....... +. .......-|...
T Consensus 176 --G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrny 253 (385)
T KOG1034|consen 176 --GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNY 253 (385)
T ss_pred --ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccch
Confidence 245789999999999999999999999999999996432100000 00 000011223333
Q ss_pred ceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCC
Q 000268 446 VNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPP 525 (1757)
Q Consensus 446 V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~ 525 (1757)
|.|+.|. ++++++-+.++.|..|.+-.-. ..++ .. .+
T Consensus 254 VDCvrw~----------------------------gd~ilSkscenaI~~w~pgkl~---------e~~~-~v-----kp 290 (385)
T KOG1034|consen 254 VDCVRWF----------------------------GDFILSKSCENAIVCWKPGKLE---------ESIH-NV-----KP 290 (385)
T ss_pred HHHHHHH----------------------------hhheeecccCceEEEEecchhh---------hhhh-cc-----CC
Confidence 3333332 3689999999999999763100 1111 00 00
Q ss_pred CCCCCCCceeecCCCCCeeEE--EEcCCCCEEEEEecCCeEEEEECCCCceE--EEEeC--CCCCeEEEEEecCCCcEEE
Q 000268 526 QPPRGGPRQRILPTPRGVNMI--VWSLDNRFVLAAIMDCRICVWNAADGSLV--HSLTG--HTESTYVLDVHPFNPRIAM 599 (1757)
Q Consensus 526 ~~~~~~~~~~l~~h~~~VtsV--afSPDG~~LaSGs~DG~I~IWDl~tgkll--~~L~g--H~~~VtsLafSPdd~~lLa 599 (1757)
.........++.-....|.-+ +|.|-+++||.|...|.|++||+....+. .++.. ....|...+|+. ++.+|+
T Consensus 291 ~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~-dgs~lv 369 (385)
T KOG1034|consen 291 PESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSR-DGSILV 369 (385)
T ss_pred CccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecc-cCcEEE
Confidence 011112222333334445554 56677899999999999999999876652 23322 234688999998 778888
Q ss_pred EEeCCCcEEEEeCC
Q 000268 600 SAGYDGKTIVWDIW 613 (1757)
Q Consensus 600 Sgs~DG~IrIWDl~ 613 (1757)
..+.|++|.-||..
T Consensus 370 ~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 370 LVCDDGTVWRWDRV 383 (385)
T ss_pred EEeCCCcEEEEEee
Confidence 88999999999863
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.5e-18 Score=216.73 Aligned_cols=286 Identities=21% Similarity=0.348 Sum_probs=219.8
Q ss_pred EEEECCCCC-EEEEE----------cCCceEEEEecC--CCe----EEEEEecCCCCeEEEEEcCCCCE----EEEEeCC
Q 000268 248 CAIFDRSGR-YVITG----------SDDRLVKIWSME--TAY----CLASCRGHEGDITDLAVSSNNAL----VASASND 306 (1757)
Q Consensus 248 ~VaFSPDG~-~LATG----------S~DGtIkIWDl~--tg~----~l~tL~gH~~~VtsLafSPDg~l----LASgS~D 306 (1757)
.+||+|++. +||+| +.+.++-||.+. +.. .+..+. -......++|.+.|.. ||.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 467899886 56654 235566676553 222 233332 3456789999987765 8899999
Q ss_pred ceEEEEECCC---C---CceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCC
Q 000268 307 CIIRVWRLPD---G---LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGR 380 (1757)
Q Consensus 307 GtIrVWDl~t---g---~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~ 380 (1757)
|.|.+||... + ..+..+..|++.|..+.|++... .+|++|+.||.|.|||+...+.....
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~--nlLASGa~~geI~iWDlnn~~tP~~~------------ 155 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQG--NLLASGADDGEILIWDLNKPETPFTP------------ 155 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCC--ceeeccCCCCcEEEeccCCcCCCCCC------------
Confidence 9999999764 2 34667788999999999999876 38999999999999999864322111
Q ss_pred CCCCCCCCCCCCcceEEEEECCC-CCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCC--CCceEEEEccCccc
Q 000268 381 NMAPSSSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE--NDVNYVQFSGCAVA 457 (1757)
Q Consensus 381 ~~~~~~~~~~~~~~V~slafSpd-G~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~--~~V~sLafSpdg~~ 457 (1757)
........|.+++|+.. ...|++++.+|.+.|||++..+ .+..+..|. ..+..|+|+|+..
T Consensus 156 ------~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~---------pii~ls~~~~~~~~S~l~WhP~~a- 219 (1049)
T KOG0307|consen 156 ------GSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK---------PIIKLSDTPGRMHCSVLAWHPDHA- 219 (1049)
T ss_pred ------CCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCC---------cccccccCCCccceeeeeeCCCCc-
Confidence 01224567999999874 4678899999999999998632 333344443 3578999999862
Q ss_pred cccccccCCCCCCCCcccccccCCCcEEEEcCCC---eEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCce
Q 000268 458 SRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG---SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQ 534 (1757)
Q Consensus 458 s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DG---tI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~ 534 (1757)
..|++++.|. .|.+||++. ...+.+
T Consensus 220 ------------------------Tql~~As~dd~~PviqlWDlR~----------------------------assP~k 247 (1049)
T KOG0307|consen 220 ------------------------TQLLVASGDDSAPVIQLWDLRF----------------------------ASSPLK 247 (1049)
T ss_pred ------------------------eeeeeecCCCCCceeEeecccc----------------------------cCCchh
Confidence 4666666553 588999884 234556
Q ss_pred eecCCCCCeeEEEEcCCC-CEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000268 535 RILPTPRGVNMIVWSLDN-RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1757)
Q Consensus 535 ~l~~h~~~VtsVafSPDG-~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~ 613 (1757)
.+..|..+|.++.|++.+ ++|++++.|+.|.+|+..+|+.+..+......++.+.|+|-+..++++++.||.|.|+.+.
T Consensus 248 ~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 248 ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeee
Confidence 667899999999999977 8999999999999999999999999998889999999999888899999999999999986
Q ss_pred CCc
Q 000268 614 EGI 616 (1757)
Q Consensus 614 tg~ 616 (1757)
.+.
T Consensus 328 ~~~ 330 (1049)
T KOG0307|consen 328 GTD 330 (1049)
T ss_pred cCC
Confidence 543
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.6e-17 Score=190.74 Aligned_cols=240 Identities=20% Similarity=0.284 Sum_probs=184.0
Q ss_pred CCCEEEEEcCCceEEEEecCCC---eEEEE------------------EecCCCCeEEEEEcCCC-CEEEEEeCCceEEE
Q 000268 254 SGRYVITGSDDRLVKIWSMETA---YCLAS------------------CRGHEGDITDLAVSSNN-ALVASASNDCIIRV 311 (1757)
Q Consensus 254 DG~~LATGS~DGtIkIWDl~tg---~~l~t------------------L~gH~~~VtsLafSPDg-~lLASgS~DGtIrV 311 (1757)
.|+|+|.|+.|..|.|||+.-. .+..+ -.+|+..|.+|+|+.+- ..||+||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 4689999999999999997421 11111 23689999999998764 48999999999999
Q ss_pred EECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCC
Q 000268 312 WRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQ 391 (1757)
Q Consensus 312 WDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~ 391 (1757)
||+.+|++..++..|.+.|.++.|+|... .+|++|+.|++|.+.|.+........ -..
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p--~~LLsGs~D~~V~l~D~R~~~~s~~~--------------------wk~ 328 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEP--SVLLSGSYDGTVALKDCRDPSNSGKE--------------------WKF 328 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCc--eEEEeccccceEEeeeccCccccCce--------------------EEe
Confidence 99999999999999999999999999865 48999999999999999853222111 123
Q ss_pred CcceEEEEECCCC-CEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCC
Q 000268 392 SHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDS 470 (1757)
Q Consensus 392 ~~~V~slafSpdG-~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~ 470 (1757)
.+.|-.++|.|.. ..+++++.||+|+-+|++.. ++++..+..|.+.|.+|++++..
T Consensus 329 ~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~--------~~~vwt~~AHd~~ISgl~~n~~~--------------- 385 (463)
T KOG0270|consen 329 DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP--------GKPVWTLKAHDDEISGLSVNIQT--------------- 385 (463)
T ss_pred ccceEEEEecCCCceeEEEecCCceEEeeecCCC--------CCceeEEEeccCCcceEEecCCC---------------
Confidence 5668899999855 56788889999999999853 57889999999999999998754
Q ss_pred CCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcC
Q 000268 471 TPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL 550 (1757)
Q Consensus 471 ~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSP 550 (1757)
+..+++++.|+.|++|++....... ........+...|+++.|
T Consensus 386 ----------p~~l~t~s~d~~Vklw~~~~~~~~~---------------------------v~~~~~~~~rl~c~~~~~ 428 (463)
T KOG0270|consen 386 ----------PGLLSTASTDKVVKLWKFDVDSPKS---------------------------VKEHSFKLGRLHCFALDP 428 (463)
T ss_pred ----------CcceeeccccceEEEEeecCCCCcc---------------------------cccccccccceeecccCC
Confidence 4689999999999999987422100 000000112255667777
Q ss_pred CCC-EEEEEecCCeEEEEECCCCceE
Q 000268 551 DNR-FVLAAIMDCRICVWNAADGSLV 575 (1757)
Q Consensus 551 DG~-~LaSGs~DG~I~IWDl~tgkll 575 (1757)
+-. +++.|+..+.++|||+.+...+
T Consensus 429 ~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 429 DVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred CcceEEEecCccceEEEeecccChhH
Confidence 655 4667888888999999876544
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-16 Score=181.61 Aligned_cols=305 Identities=15% Similarity=0.230 Sum_probs=216.2
Q ss_pred EEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCC------CeEEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCce
Q 000268 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET------AYCLASCR-GHEGDITDLAVSSNNALVASASNDCI 308 (1757)
Q Consensus 236 l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~t------g~~l~tL~-gH~~~VtsLafSPDg~lLASgS~DGt 308 (1757)
.+-+.+|.+.|+++.||.+|++||+|++|..++||++.. .+++.... .|...|.|++|...++.|++|..+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 355889999999999999999999999999999999853 34444433 36689999999999999999999999
Q ss_pred EEEEECCCCCceEEecC--CCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCC
Q 000268 309 IRVWRLPDGLPISVLRG--HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1757)
Q Consensus 309 IrVWDl~tg~~l~~l~g--H~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~ 386 (1757)
|.+.|+++.+.+.++.. ..+.|+.+..+|..+ .|++.+.+|.|.+||.+.........++
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN---~~~~~t~~~~V~~~D~Rd~~~~~~~~~~--------------- 190 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDN---TLIVVTRAKLVSFIDNRDRQNPISLVLP--------------- 190 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCc---eEEEEecCceEEEEeccCCCCCCceeee---------------
Confidence 99999999988877752 335999999999876 8999999999999999876532222221
Q ss_pred CCCCCCcceEEEEECCCC-CEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccC
Q 000268 387 SAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 465 (1757)
Q Consensus 387 ~~~~~~~~V~slafSpdG-~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~ 465 (1757)
........++.|+|.. .+|++.+..+-+.|||++......- + ......+......-.++.|+|+|
T Consensus 191 --AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~-~-~~~~~~L~~~~~~~M~~~~~~~G---------- 256 (609)
T KOG4227|consen 191 --ANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVY-Q-RSMFKGLPQENTEWMGSLWSPSG---------- 256 (609)
T ss_pred --cCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHH-h-hhccccCcccchhhhheeeCCCC----------
Confidence 1123446788899954 6788888889999999976432100 0 00111122222234567788876
Q ss_pred CCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeE
Q 000268 466 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNM 545 (1757)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~Vts 545 (1757)
..|++--....-.+||+-+.++....... .+.+ ......+.+
T Consensus 257 ----------------~Q~msiRR~~~P~~~D~~S~R~~V~k~D~----------------N~~G------Y~N~~T~KS 298 (609)
T KOG4227|consen 257 ----------------NQFMSIRRGKCPLYFDFISQRCFVLKSDH----------------NPNG------YCNIKTIKS 298 (609)
T ss_pred ----------------CeehhhhccCCCEEeeeecccceeEeccC----------------CCCc------ceeeeeeee
Confidence 45555444445556666653321100000 0000 011233667
Q ss_pred EEEcCCCCEEEEEecCCeEEEEECCC----------C-------------ceEEEEeCCCCCeEEEEEecCCCcEEEEEe
Q 000268 546 IVWSLDNRFVLAAIMDCRICVWNAAD----------G-------------SLVHSLTGHTESTYVLDVHPFNPRIAMSAG 602 (1757)
Q Consensus 546 VafSPDG~~LaSGs~DG~I~IWDl~t----------g-------------kll~~L~gH~~~VtsLafSPdd~~lLaSgs 602 (1757)
++|.-|- .+++|+.+-.|++|.+.. | +.+.+|+||...+..|.|+| ...+|++.|
T Consensus 299 ~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~-H~~~l~SSG 376 (609)
T KOG4227|consen 299 MTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQ-HNNLLVSSG 376 (609)
T ss_pred eeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecC-CcceEeccc
Confidence 7776554 499999999999998743 1 23557899999999999999 678888999
Q ss_pred CCCcEEEEeC
Q 000268 603 YDGKTIVWDI 612 (1757)
Q Consensus 603 ~DG~IrIWDl 612 (1757)
-...++||.-
T Consensus 377 VE~~~KlWS~ 386 (609)
T KOG4227|consen 377 VENSFKLWSD 386 (609)
T ss_pred hhhheecccc
Confidence 9999999975
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-15 Score=189.22 Aligned_cols=362 Identities=16% Similarity=0.192 Sum_probs=250.1
Q ss_pred CccccccceeEEEEccCCCCEEEEEECCCCC---EEEEEcCCceEEEEecCCCeEEEEEe--------------------
Q 000268 226 PSTMVQKMQNIKRVRGHRNAVYCAIFDRSGR---YVITGSDDRLVKIWSMETAYCLASCR-------------------- 282 (1757)
Q Consensus 226 ~~~~~~~~k~l~tL~GH~~~V~~VaFSPDG~---~LATGS~DGtIkIWDl~tg~~l~tL~-------------------- 282 (1757)
-.+...++.+++.|.+|..++..+.+.|... ++++++.||+|++||...+.+++++.
T Consensus 40 ~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~ 119 (792)
T KOG1963|consen 40 KVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISAN 119 (792)
T ss_pred EEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccce
Confidence 3455678889999999999999999988654 67899999999999976544332210
Q ss_pred --------------------------------------------------------------------------------
Q 000268 283 -------------------------------------------------------------------------------- 282 (1757)
Q Consensus 283 -------------------------------------------------------------------------------- 282 (1757)
T Consensus 120 ~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~ 199 (792)
T KOG1963|consen 120 VYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRD 199 (792)
T ss_pred eEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccch
Confidence
Q ss_pred ---cCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCC--C--CceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEE
Q 000268 283 ---GHEGDITDLAVSSNNALVASASNDCIIRVWRLPD--G--LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355 (1757)
Q Consensus 283 ---gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~t--g--~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIr 355 (1757)
.|.-.+++.+++|+++++|+|..||.|.||.--. + .....+.-|...|++++|+++|. +|++||..|.+.
T Consensus 200 ~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~---~LlSGG~E~VLv 276 (792)
T KOG1963|consen 200 ITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGA---YLLSGGREGVLV 276 (792)
T ss_pred hhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCc---eEeecccceEEE
Confidence 1333467788999999999999999999996322 1 34566778999999999999998 999999999999
Q ss_pred EEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcc
Q 000268 356 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHE 435 (1757)
Q Consensus 356 IWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~ 435 (1757)
+|.+.+++ +++ + ..-...|..+.++||+.+.++...|+.|.+..+.+.......+....
T Consensus 277 ~Wq~~T~~--kqf-L------------------PRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~ 335 (792)
T KOG1963|consen 277 LWQLETGK--KQF-L------------------PRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKP 335 (792)
T ss_pred EEeecCCC--ccc-c------------------cccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccC
Confidence 99999887 222 1 12456799999999999999999999999998744221111110000
Q ss_pred e--eeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCccccccccc
Q 000268 436 I--DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQA 513 (1757)
Q Consensus 436 i--~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~ 513 (1757)
. ..-....+-.+.++++|.. +.++-.+..|.|.+||+-+.....+...-...
T Consensus 336 ~~~~~k~~~~~l~t~~~idpr~--------------------------~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n 389 (792)
T KOG1963|consen 336 PTPSTKTRPQSLTTGVSIDPRT--------------------------NSLVLNGHPGHVQFYDLYTDSTIYKLQVCDEN 389 (792)
T ss_pred CCccccccccccceeEEEcCCC--------------------------CceeecCCCceEEEEeccccceeeeEEEEeec
Confidence 0 0011123445566666632 57788889999999999875532111111000
Q ss_pred ccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEe--------cC--CeEEEEECCCCc----eEEE-E
Q 000268 514 YHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI--------MD--CRICVWNAADGS----LVHS-L 578 (1757)
Q Consensus 514 ~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs--------~D--G~I~IWDl~tgk----ll~~-L 578 (1757)
+. .+. ..+...++.++.+..|.+++|+- .| -.+++|-..... +... .
T Consensus 390 ~~-------------~~~-----~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~ 451 (792)
T KOG1963|consen 390 YS-------------DGD-----VNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKIN 451 (792)
T ss_pred cc-------------CCc-----ceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEe
Confidence 00 000 02334688889999999999853 23 347888765433 2222 2
Q ss_pred eCCCCCeEEEEEecCCCc-EEEEEeCCCcEEEEeCCCC----------ceEEEEeecCcceEEEEEcCCCCEEEEEeCCC
Q 000268 579 TGHTESTYVLDVHPFNPR-IAMSAGYDGKTIVWDIWEG----------IPIRIYEISRFRLVDGKFSPDGASIILSDDVG 647 (1757)
Q Consensus 579 ~gH~~~VtsLafSPdd~~-lLaSgs~DG~IrIWDl~tg----------~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG 647 (1757)
..|...+...++.+.-.. .+++++.||.++||-+... .|...-.-|..++++++||.||..|+++ .++
T Consensus 452 ~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s-~~~ 530 (792)
T KOG1963|consen 452 NPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVS-FDD 530 (792)
T ss_pred cCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEe-cCC
Confidence 467777666666543343 7889999999999988332 2222211257789999999999766655 558
Q ss_pred eEEEEECCC
Q 000268 648 QLYILNTGQ 656 (1757)
Q Consensus 648 ~I~IWdl~t 656 (1757)
.|.+||..+
T Consensus 531 ~Itiwd~~~ 539 (792)
T KOG1963|consen 531 TITIWDYDT 539 (792)
T ss_pred EEEEecCCC
Confidence 999999987
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-16 Score=187.93 Aligned_cols=333 Identities=16% Similarity=0.252 Sum_probs=234.4
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEE
Q 000268 277 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356 (1757)
Q Consensus 277 ~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrI 356 (1757)
+...++||.+.|.+|...|.|.+||+|+.||+|+||.+.+|.+++++. ..+.|.||+|+|.+... .||++- ...+.|
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~-vLAvA~-~~~~~i 468 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLC-VLAVAV-GECVLI 468 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCce-eEEEEe-cCceEE
Confidence 445578999999999999999999999999999999999999999887 45689999999987642 444444 344666
Q ss_pred EecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEe----eCCceEEEecCCCCCCCCCCCC
Q 000268 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG----SSDTLARVWNACKPNTDDSDQP 432 (1757)
Q Consensus 357 WDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasG----s~DG~IrVWDl~t~~~~~s~~~ 432 (1757)
.+..-|..+..-. ....|+++ ..++.+..|.-.... +.
T Consensus 469 vnp~~G~~~e~~~---------------------------------t~ell~~~~~~~~p~~~~~~W~~~~~~-----e~ 510 (733)
T KOG0650|consen 469 VNPIFGDRLEVGP---------------------------------TKELLASAPNESEPDAAVVTWSRASLD-----EL 510 (733)
T ss_pred eCccccchhhhcc---------------------------------hhhhhhcCCCccCCcccceeechhhhh-----hh
Confidence 6654442111100 00011111 124456677653211 11
Q ss_pred CcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCC---CeEEEEeCCCCCCCccccc
Q 000268 433 NHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRD---GSAIIWIPRSRRSHPKAAR 509 (1757)
Q Consensus 433 ~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~D---GtI~IWDl~t~k~~~~~~~ 509 (1757)
...+.....|...|..|.|...| ++|++...+ ..|.|.++...+..
T Consensus 511 ~~~v~~~I~~~k~i~~vtWHrkG--------------------------DYlatV~~~~~~~~VliHQLSK~~sQ----- 559 (733)
T KOG0650|consen 511 EKGVCIVIKHPKSIRQVTWHRKG--------------------------DYLATVMPDSGNKSVLIHQLSKRKSQ----- 559 (733)
T ss_pred ccceEEEEecCCccceeeeecCC--------------------------ceEEEeccCCCcceEEEEeccccccc-----
Confidence 22255666788999999999886 788877654 45778877642210
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEE
Q 000268 510 WTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLD 589 (1757)
Q Consensus 510 w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLa 589 (1757)
.-+....+.|.++.|.|...+|++++. ..|+|||+..+.+++.+......|..++
T Consensus 560 ------------------------~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~ms 614 (733)
T KOG0650|consen 560 ------------------------SPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMS 614 (733)
T ss_pred ------------------------CchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeee
Confidence 112234466889999999999999886 5899999999988888887788899999
Q ss_pred EecCCCcEEEEEeCCCcEEEEeCCCC-ceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccccccccee
Q 000268 590 VHPFNPRIAMSAGYDGKTIVWDIWEG-IPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQF 668 (1757)
Q Consensus 590 fSPdd~~lLaSgs~DG~IrIWDl~tg-~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~tGe~~~~~~~~~~ 668 (1757)
.|| +|.-|+.|+.|+.++.+|+.-+ ++.+++..|...+++++|++--.++|+|+.||++.||.-.- ..+
T Consensus 615 ihp-~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~V---Y~D------ 684 (733)
T KOG0650|consen 615 IHP-NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMV---YND------ 684 (733)
T ss_pred ecC-CCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeee---ehh------
Confidence 999 5555668999999999999754 67778888888999999999999999999999999986310 000
Q ss_pred ecCCCccEEEccCCceeecccccccCcCCCCCcccCCCCCCCCCcchhhhhcccccccceEECCCCCeEEEeeCCCCCCc
Q 000268 669 FLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQG 748 (1757)
Q Consensus 669 fs~D~r~Li~d~~g~vlD~~tql~phl~~l~~~L~D~~~~p~p~~~Q~l~~~r~~~v~~lAfSPDG~~LAvg~d~s~~~~ 748 (1757)
..+.|-+.+ ... ++.-...+.+|++...|.|.--||.++ +.++.
T Consensus 685 --------------------l~qnpliVP-------lK~------L~gH~~~~~~gVLd~~wHP~qpWLfsA---GAd~t 728 (733)
T KOG0650|consen 685 --------------------LLQNPLIVP-------LKR------LRGHEKTNDLGVLDTIWHPRQPWLFSA---GADGT 728 (733)
T ss_pred --------------------hhcCCceEe-------eee------ccCceeecccceEeecccCCCceEEec---CCCce
Confidence 000000000 000 000001123568888999999999999 78888
Q ss_pred eEee
Q 000268 749 YQLQ 752 (1757)
Q Consensus 749 v~l~ 752 (1757)
+++|
T Consensus 729 irlf 732 (733)
T KOG0650|consen 729 IRLF 732 (733)
T ss_pred EEee
Confidence 8887
|
|
| >cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-17 Score=168.56 Aligned_cols=102 Identities=21% Similarity=0.314 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhhhcccccccccccccccc--cCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhc
Q 000268 1646 NKLLSAFAKLEQSANRVQDQYGVQKLKQVS--QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYF 1723 (1757)
Q Consensus 1646 ~kLls~l~kle~~~~~~~~~~~~~~~~~~~--~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn 1723 (1757)
|++-..+..+......+..++.|..|++.. ..|+||++|++||||+||++||++++|+++++|+.|+++||.||.+||
T Consensus 4 ~q~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN 83 (107)
T cd05497 4 NQLQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYN 83 (107)
T ss_pred HHHHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 344444445455555678888999998865 689999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCC
Q 000268 1724 GRNTDLSTKIKRLSDLVTRTLSSL 1747 (1757)
Q Consensus 1724 ~~~s~i~~~a~~l~~~~~~~l~~~ 1747 (1757)
+|++.++.+|..|+++|.++|+.|
T Consensus 84 ~~~s~i~~~A~~l~~~f~~~l~~~ 107 (107)
T cd05497 84 KPGDDVVLMAQTLEKLFLQKLAQM 107 (107)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999865
|
Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.1e-17 Score=208.05 Aligned_cols=293 Identities=18% Similarity=0.310 Sum_probs=215.9
Q ss_pred EEEEcCCCC-EEEEE----------eCCceEEEEECC--CC----CceEEecCCCCceEEEEecCCCCce-EEEEEEeCC
Q 000268 290 DLAVSSNNA-LVASA----------SNDCIIRVWRLP--DG----LPISVLRGHTAAVTAIAFSPRPGSV-YQLLSSSDD 351 (1757)
Q Consensus 290 sLafSPDg~-lLASg----------S~DGtIrVWDl~--tg----~~l~~l~gH~~~VtsLafSPdg~~~-~~LaSgs~D 351 (1757)
.+||+|.+. +||+| +.+.++-||.+. +. +++..+. -....+.++|.+.+... -+|+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 467888876 55554 234556666543 22 2333333 34567899999877521 158889999
Q ss_pred CcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCC-CEEEEeeCCceEEEecCCCCCCCCCC
Q 000268 352 GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSD 430 (1757)
Q Consensus 352 GtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG-~~LasGs~DG~IrVWDl~t~~~~~s~ 430 (1757)
|.|.+||...-. .+...........|.+.|..+.|++.. ++||+|+.+|.|.|||+.+.......
T Consensus 90 G~I~ly~p~~~~--------------~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~ 155 (1049)
T KOG0307|consen 90 GNIVLYDPASII--------------ANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTP 155 (1049)
T ss_pred CceEEecchhhc--------------cCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCC
Confidence 999999986520 011112233445689999999999965 49999999999999999764332111
Q ss_pred CCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccc
Q 000268 431 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510 (1757)
Q Consensus 431 ~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w 510 (1757)
. -......|.+++|+..- ...|++++.+|.+.|||++..+..
T Consensus 156 ~-------~~~~~~eI~~lsWNrkv-------------------------qhILAS~s~sg~~~iWDlr~~~pi------ 197 (1049)
T KOG0307|consen 156 G-------SQAPPSEIKCLSWNRKV-------------------------SHILASGSPSGRAVIWDLRKKKPI------ 197 (1049)
T ss_pred C-------CCCCcccceEeccchhh-------------------------hHHhhccCCCCCceeccccCCCcc------
Confidence 1 22346789999998543 258999999999999999964311
Q ss_pred cccccccCCCCCCCCCCCCCCCceeecCC--CCCeeEEEEcCCCC-EEEEEecCC---eEEEEECCC-CceEEEEeCCCC
Q 000268 511 TQAYHLKVPPPPMPPQPPRGGPRQRILPT--PRGVNMIVWSLDNR-FVLAAIMDC---RICVWNAAD-GSLVHSLTGHTE 583 (1757)
Q Consensus 511 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~h--~~~VtsVafSPDG~-~LaSGs~DG---~I~IWDl~t-gkll~~L~gH~~ 583 (1757)
..+..+ ...+..++|+|++. .|++++.|. .|.+||++. ..+++++++|..
T Consensus 198 -----------------------i~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~ 254 (1049)
T KOG0307|consen 198 -----------------------IKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQR 254 (1049)
T ss_pred -----------------------cccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccccc
Confidence 111111 13477899999875 466666554 599999876 457888999999
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCcceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCc
Q 000268 584 STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGA-SIILSDDVGQLYILNTGQGE 658 (1757)
Q Consensus 584 ~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk-~LAsgs~DG~I~IWdl~tGe 658 (1757)
.|.+|.|++.|.++|+|++.|+.|.+|+..+|+.+..+......++.+.|+|... .+++++-+|.|.|+.+..+.
T Consensus 255 GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 255 GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999999999989999999999999999999999999988778899999999776 77788999999999987653
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-16 Score=184.19 Aligned_cols=261 Identities=16% Similarity=0.215 Sum_probs=203.1
Q ss_pred CEEEEEECCCCCE-EEEEcCCceEEEEecC--CCeE--EEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCc
Q 000268 245 AVYCAIFDRSGRY-VITGSDDRLVKIWSME--TAYC--LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLP 319 (1757)
Q Consensus 245 ~V~~VaFSPDG~~-LATGS~DGtIkIWDl~--tg~~--l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~ 319 (1757)
.|..+.|+....+ +|+.+.|..|++|.-. +++. +..+.+ ..-.|++......++++|+..+.|+|||++...+
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g--d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~ 113 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG--DNAFCVACASQSLYEISGGQSGCVKIWDLRAKLI 113 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeecccc--chHHHHhhhhcceeeeccCcCceeeehhhHHHHH
Confidence 3899999987742 3344568899999643 2222 222222 2445666555668999999999999999998888
Q ss_pred eEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEE
Q 000268 320 ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCA 399 (1757)
Q Consensus 320 l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sla 399 (1757)
.+.+++|...|+++.+.-... +|++++..|.|.|..+.++.....+.. +....|.-+.
T Consensus 114 hr~lkdh~stvt~v~YN~~De---yiAsvs~gGdiiih~~~t~~~tt~f~~-------------------~sgqsvRll~ 171 (673)
T KOG4378|consen 114 HRFLKDHQSTVTYVDYNNTDE---YIASVSDGGDIIIHGTKTKQKTTTFTI-------------------DSGQSVRLLR 171 (673)
T ss_pred hhhccCCcceeEEEEecCCcc---eeEEeccCCcEEEEecccCccccceec-------------------CCCCeEEEee
Confidence 889999999999999988766 999999999999999988865444422 2234466899
Q ss_pred ECCCCC-EEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccc
Q 000268 400 FNANGT-VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478 (1757)
Q Consensus 400 fSpdG~-~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~ 478 (1757)
|++..+ +|.+++.+|.|.+||+... .........|..+...|+|+|..
T Consensus 172 ys~skr~lL~~asd~G~VtlwDv~g~--------sp~~~~~~~HsAP~~gicfspsn----------------------- 220 (673)
T KOG4378|consen 172 YSPSKRFLLSIASDKGAVTLWDVQGM--------SPIFHASEAHSAPCRGICFSPSN----------------------- 220 (673)
T ss_pred cccccceeeEeeccCCeEEEEeccCC--------CcccchhhhccCCcCcceecCCc-----------------------
Confidence 999765 5667889999999999542 22445677899999999999975
Q ss_pred cCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEE
Q 000268 479 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA 558 (1757)
Q Consensus 479 ~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSG 558 (1757)
..+||+.+.|..|.+||....+.. ..+.-..+...|+|+++|.+|++|
T Consensus 221 --e~l~vsVG~Dkki~~yD~~s~~s~------------------------------~~l~y~~Plstvaf~~~G~~L~aG 268 (673)
T KOG4378|consen 221 --EALLVSVGYDKKINIYDIRSQAST------------------------------DRLTYSHPLSTVAFSECGTYLCAG 268 (673)
T ss_pred --cceEEEecccceEEEeeccccccc------------------------------ceeeecCCcceeeecCCceEEEee
Confidence 358899999999999999864311 112234567899999999999999
Q ss_pred ecCCeEEEEECCC-CceEEEEeCCCCCeEEEEEec
Q 000268 559 IMDCRICVWNAAD-GSLVHSLTGHTESTYVLDVHP 592 (1757)
Q Consensus 559 s~DG~I~IWDl~t-gkll~~L~gH~~~VtsLafSP 592 (1757)
...|.|..||++. ..++.++..|...|++|+|-|
T Consensus 269 ~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 269 NSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQP 303 (673)
T ss_pred cCCceEEEEecccCCCCceEeeecccceeEEEeee
Confidence 9999999999975 568899999999999999988
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.8e-16 Score=180.58 Aligned_cols=284 Identities=13% Similarity=0.147 Sum_probs=207.2
Q ss_pred ceEEEEecCCCeEEEEEecCC--CCeEEEEEcCCCC-EEEEEeCCceEEEEECCCC--Cc--eEEecCCCCceEEEEecC
Q 000268 265 RLVKIWSMETAYCLASCRGHE--GDITDLAVSSNNA-LVASASNDCIIRVWRLPDG--LP--ISVLRGHTAAVTAIAFSP 337 (1757)
Q Consensus 265 GtIkIWDl~tg~~l~tL~gH~--~~VtsLafSPDg~-lLASgS~DGtIrVWDl~tg--~~--l~~l~gH~~~VtsLafSP 337 (1757)
..++|||+........+..|. -.|.++.|+..+. .+|+.+.|..|++|.-... .. +..+.+. .-.|++...
T Consensus 12 d~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s 89 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACAS 89 (673)
T ss_pred CceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhh
Confidence 369999997765554444332 3489999998764 2344456888999974322 11 2222222 334444433
Q ss_pred CCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEE
Q 000268 338 RPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLAR 417 (1757)
Q Consensus 338 dg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~Ir 417 (1757)
..- ++++|+..++|+|||++...+... ...|...|+++.++-...+||+++..|.|.
T Consensus 90 ~S~---y~~sgG~~~~Vkiwdl~~kl~hr~--------------------lkdh~stvt~v~YN~~DeyiAsvs~gGdii 146 (673)
T KOG4378|consen 90 QSL---YEISGGQSGCVKIWDLRAKLIHRF--------------------LKDHQSTVTYVDYNNTDEYIASVSDGGDII 146 (673)
T ss_pred cce---eeeccCcCceeeehhhHHHHHhhh--------------------ccCCcceeEEEEecCCcceeEEeccCCcEE
Confidence 333 899999999999999984332222 345788999999999999999999999999
Q ss_pred EecCCCCCCCCCCCCCcceeeecCC-CCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEE
Q 000268 418 VWNACKPNTDDSDQPNHEIDVLSGH-ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW 496 (1757)
Q Consensus 418 VWDl~t~~~~~s~~~~~~i~~l~gH-~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IW 496 (1757)
|..+.++.. ...+... ...|.-+.|++.. ..+|.+++.+|.|.+|
T Consensus 147 ih~~~t~~~---------tt~f~~~sgqsvRll~ys~sk-------------------------r~lL~~asd~G~Vtlw 192 (673)
T KOG4378|consen 147 IHGTKTKQK---------TTTFTIDSGQSVRLLRYSPSK-------------------------RFLLSIASDKGAVTLW 192 (673)
T ss_pred EEecccCcc---------ccceecCCCCeEEEeeccccc-------------------------ceeeEeeccCCeEEEE
Confidence 999876432 2223322 3345578888754 2478899999999999
Q ss_pred eCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCC-EEEEEecCCeEEEEECCCCceE
Q 000268 497 IPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR-FVLAAIMDCRICVWNAADGSLV 575 (1757)
Q Consensus 497 Dl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~-~LaSGs~DG~I~IWDl~tgkll 575 (1757)
|+..... ...-...|..+...|||+|... +|++.+.|..|.+||+...+..
T Consensus 193 Dv~g~sp----------------------------~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~ 244 (673)
T KOG4378|consen 193 DVQGMSP----------------------------IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST 244 (673)
T ss_pred eccCCCc----------------------------ccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccc
Confidence 9985321 1112345778888999999665 6778999999999999987777
Q ss_pred EEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-CceEEEEeecCcceEEEEEcCCC
Q 000268 576 HSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE-GIPIRIYEISRFRLVDGKFSPDG 637 (1757)
Q Consensus 576 ~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~t-g~~l~~l~~~~~~VtslafSPDG 637 (1757)
..+.. ..+...|+|++ ++.+|+.|...|.|..||++. ..++.++..|...|++++|-|.-
T Consensus 245 ~~l~y-~~Plstvaf~~-~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 245 DRLTY-SHPLSTVAFSE-CGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ceeee-cCCcceeeecC-CceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 77763 45688999999 889999999999999999975 56889999999999999998865
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-15 Score=170.38 Aligned_cols=276 Identities=19% Similarity=0.280 Sum_probs=203.7
Q ss_pred EEEEECCCCCEEEEEcCCceEEEEecCC--------Ce----EEEEEe-cCCCCeEEEEEc-------CCCCEEEEEeCC
Q 000268 247 YCAIFDRSGRYVITGSDDRLVKIWSMET--------AY----CLASCR-GHEGDITDLAVS-------SNNALVASASND 306 (1757)
Q Consensus 247 ~~VaFSPDG~~LATGS~DGtIkIWDl~t--------g~----~l~tL~-gH~~~VtsLafS-------PDg~lLASgS~D 306 (1757)
..+.|||||..|++-+.|..+.+|++.. +. ...+++ .....|...+|- |+..++|+.+.+
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 4567999999999999999999999842 11 111222 134567788875 577799999999
Q ss_pred ceEEEEECCCCCceEEecC--CCC---ceEEEEecCCCCceEEEEEEeCCCcEEEEec-CCCCccceeecCCCCccccCC
Q 000268 307 CIIRVWRLPDGLPISVLRG--HTA---AVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA-RYSQFSPRIYIPRPSDAVAGR 380 (1757)
Q Consensus 307 GtIrVWDl~tg~~l~~l~g--H~~---~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl-~tg~~~~~i~l~~~~~~~~g~ 380 (1757)
.-|++||.-+|+....+++ |.. ...+++|+|||. +|++ +....|+++|+ +.|+........
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe---qlfa-GykrcirvFdt~RpGr~c~vy~t~--------- 199 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE---QLFA-GYKRCIRVFDTSRPGRDCPVYTTV--------- 199 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC---eEee-cccceEEEeeccCCCCCCcchhhh---------
Confidence 9999999999998887764 333 456899999997 5555 55678999999 666543332110
Q ss_pred CCCCCCCCCCCCcceEEEEECCC-CCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccc
Q 000268 381 NMAPSSSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASR 459 (1757)
Q Consensus 381 ~~~~~~~~~~~~~~V~slafSpd-G~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~ 459 (1757)
.....+..+-+.|++|+|- ...+++|+....+-||.-.. ..++..+-+|.+.|+.++|.++|
T Consensus 200 ----~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~---------~~pl~llggh~gGvThL~~~edG---- 262 (406)
T KOG2919|consen 200 ----TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG---------RRPLQLLGGHGGGVTHLQWCEDG---- 262 (406)
T ss_pred ----hcccccccceeeeeeccCCCCcceeeecccceeeeEecCC---------CCceeeecccCCCeeeEEeccCc----
Confidence 0112234667899999994 45899999888888887643 45677888999999999999997
Q ss_pred cccccCCCCCCCCcccccccCCCcEEEEcC-CCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecC
Q 000268 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCSR-DGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP 538 (1757)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~-DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 538 (1757)
+.|++|+. |-.|..||++..+ .++..+..
T Consensus 263 ----------------------n~lfsGaRk~dkIl~WDiR~~~----------------------------~pv~~L~r 292 (406)
T KOG2919|consen 263 ----------------------NKLFSGARKDDKILCWDIRYSR----------------------------DPVYALER 292 (406)
T ss_pred ----------------------CeecccccCCCeEEEEeehhcc----------------------------chhhhhhh
Confidence 57777765 7899999999522 11112222
Q ss_pred CCC---CeeEEEEcCCCCEEEEEecCCeEEEEECCC-CceEEEEeCCCCCeEEEEEecCCCcEEEEEeC
Q 000268 539 TPR---GVNMIVWSLDNRFVLAAIMDCRICVWNAAD-GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGY 603 (1757)
Q Consensus 539 h~~---~VtsVafSPDG~~LaSGs~DG~I~IWDl~t-gkll~~L~gH~~~VtsLafSPdd~~lLaSgs~ 603 (1757)
|.. .-.-+...|+|++|++|+.||.|++||+.+ |..+..+..|...|+.++++|. -.++++++.
T Consensus 293 hv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~-mpilatssG 360 (406)
T KOG2919|consen 293 HVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPI-MPILATSSG 360 (406)
T ss_pred hccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcc-cceeeeccC
Confidence 222 112345679999999999999999999998 7888899999999999999994 456666553
|
|
| >cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.6e-17 Score=164.99 Aligned_cols=103 Identities=15% Similarity=0.270 Sum_probs=92.3
Q ss_pred ChhhHHHHHHHHHHHHhhhcccccccccccccccc--cCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHh
Q 000268 1641 DDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVS--QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSN 1718 (1757)
Q Consensus 1641 ~~~~r~kLls~l~kle~~~~~~~~~~~~~~~~~~~--~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~N 1718 (1757)
+++.|.+++..+.+|... +..++.|..+++.. ..|+||++|+.||||+||++||+++.|.++.+|..||++||+|
T Consensus 1 ~~~l~~~~~~il~~l~~~---~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~N 77 (108)
T cd05495 1 PEELRQALMPTLEKLYKQ---DPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDN 77 (108)
T ss_pred CHHHHHHHHHHHHHHHHc---CcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 357789999999888552 25667777777655 6899999999999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHHHHhC
Q 000268 1719 AESYFGRNTDLSTKIKRLSDLVTRTLSS 1746 (1757)
Q Consensus 1719 a~~fn~~~s~i~~~a~~l~~~~~~~l~~ 1746 (1757)
|.+||++++.++++|..|+++|.+.|+.
T Consensus 78 a~~yN~~~s~i~~~a~~l~~~F~~~~~~ 105 (108)
T cd05495 78 AWLYNRKTSRVYKYCTKLAEVFEQEIDP 105 (108)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999875
|
Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.9e-17 Score=188.66 Aligned_cols=331 Identities=18% Similarity=0.308 Sum_probs=242.0
Q ss_pred cccccCccccccceeEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEe-cCCCCeEEEEEcCC--C
Q 000268 221 YAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDLAVSSN--N 297 (1757)
Q Consensus 221 ~~~a~~~~~~~~~k~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~-gH~~~VtsLafSPD--g 297 (1757)
+........++.+.+...|.+|.+.|..|.|...|..|++||+|..|.+||+..+.....+. ||...|....|-|. .
T Consensus 120 ~~~~~s~~~vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d 199 (559)
T KOG1334|consen 120 YEACGSRLFVQRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGD 199 (559)
T ss_pred HHhhhhHHHHHHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCC
Confidence 33344456778888999999999999999999999999999999999999999998877765 79999998889884 4
Q ss_pred CEEEEEeCCceEEEEECC-CCCc--eEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCC
Q 000268 298 ALVASASNDCIIRVWRLP-DGLP--ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPS 374 (1757)
Q Consensus 298 ~lLASgS~DGtIrVWDl~-tg~~--l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~ 374 (1757)
..|++++.||.|++=.+. ++.+ ...+..|.+.|.-++.-|+.. +.|.+++.|+.+.-+|++.+.....+.....
T Consensus 200 ~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp--~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~- 276 (559)
T KOG1334|consen 200 RTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSP--KPFLSCGEDAVVFHIDLRQDVPAEKFVCREA- 276 (559)
T ss_pred cCceeccccCceeeeeeccccceecceecccccCccceeeecCCCC--CcccccccccceeeeeeccCCccceeeeecc-
Confidence 589999999999998764 3432 345567999999999999875 4799999999999999988765544431110
Q ss_pred ccccCCCCCCCCCCCCCCcceEEEEECCCC-CEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeec------CCCCCce
Q 000268 375 DAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLS------GHENDVN 447 (1757)
Q Consensus 375 ~~~~g~~~~~~~~~~~~~~~V~slafSpdG-~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~------gH~~~V~ 447 (1757)
.....-....++..|.. ..+++|+.|..++|||.+......... .+..+. ...-.|+
T Consensus 277 -------------~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~---~~~~f~p~hl~~d~~v~IT 340 (559)
T KOG1334|consen 277 -------------DEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNG---VLDKFCPHHLVEDDPVNIT 340 (559)
T ss_pred -------------CCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccc---hhhhcCCccccccCcccce
Confidence 00112357789999955 489999999999999997543221111 112222 2234688
Q ss_pred EEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCC
Q 000268 448 YVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQP 527 (1757)
Q Consensus 448 sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~ 527 (1757)
+++|+.++ .-|++.-.|-.|.++...-+. ...+.+..+
T Consensus 341 gl~Ysh~~--------------------------sElLaSYnDe~IYLF~~~~~~----------------G~~p~~~s~ 378 (559)
T KOG1334|consen 341 GLVYSHDG--------------------------SELLASYNDEDIYLFNKSMGD----------------GSEPDPSSP 378 (559)
T ss_pred eEEecCCc--------------------------cceeeeecccceEEecccccc----------------CCCCCCCcc
Confidence 99998765 356666677778888433111 001111111
Q ss_pred CCCCCceeecCCCC--CeeEEE-EcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCC
Q 000268 528 PRGGPRQRILPTPR--GVNMIV-WSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYD 604 (1757)
Q Consensus 528 ~~~~~~~~l~~h~~--~VtsVa-fSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~D 604 (1757)
......+.+.+|.. .|..+- |-|...|+++|+.-|.|.||+-.++++++.+.+....|+||.-||.. -+||+.|-|
T Consensus 379 ~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~-PvLAsSGid 457 (559)
T KOG1334|consen 379 REQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHL-PVLASSGID 457 (559)
T ss_pred hhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCC-chhhccCCc
Confidence 11111122455543 255554 57899999999999999999999999999999888899999999955 477899999
Q ss_pred CcEEEEeCC
Q 000268 605 GKTIVWDIW 613 (1757)
Q Consensus 605 G~IrIWDl~ 613 (1757)
.-|+||-..
T Consensus 458 ~DVKIWTP~ 466 (559)
T KOG1334|consen 458 HDVKIWTPL 466 (559)
T ss_pred cceeeecCC
Confidence 999999763
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.9e-16 Score=180.71 Aligned_cols=306 Identities=17% Similarity=0.241 Sum_probs=209.9
Q ss_pred EEEEcCCCCEEEEEeCC---ce--EEEEECCCCCceEEecCCC----CceEEEEecCC----CCceEEEEEEeCCCcEEE
Q 000268 290 DLAVSSNNALVASASND---CI--IRVWRLPDGLPISVLRGHT----AAVTAIAFSPR----PGSVYQLLSSSDDGTCRI 356 (1757)
Q Consensus 290 sLafSPDg~lLASgS~D---Gt--IrVWDl~tg~~l~~l~gH~----~~VtsLafSPd----g~~~~~LaSgs~DGtIrI 356 (1757)
.+.+-|...+|+++-.+ .. |+||+-. .. ..+..|. ....|++|... +....++|.|+.|..|.|
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~--e~-nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeI 206 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEE--EE-NLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEI 206 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCC--Cc-ceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEE
Confidence 44556666666666432 22 4444422 21 1111122 22346666432 222349999999999999
Q ss_pred EecCCCCc-cceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCC-CCEEEEeeCCceEEEecCCCCCCCCCCCCCc
Q 000268 357 WDARYSQF-SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNACKPNTDDSDQPNH 434 (1757)
Q Consensus 357 WDl~tg~~-~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpd-G~~LasGs~DG~IrVWDl~t~~~~~s~~~~~ 434 (1757)
||+.-... .+.+.+...................+|+..|.+++|+.. .+.||+|+.|.+|.+||+.++ +
T Consensus 207 WDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g---------~ 277 (463)
T KOG0270|consen 207 WDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTG---------K 277 (463)
T ss_pred eccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCC---------C
Confidence 99874332 223322211111111111123334568888899999874 468999999999999999774 4
Q ss_pred ceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccc
Q 000268 435 EIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 514 (1757)
Q Consensus 435 ~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~ 514 (1757)
+...+..|...|.++.|.|.. ...|++|+.|++|.+.|.+... ..
T Consensus 278 p~~s~~~~~k~Vq~l~wh~~~-------------------------p~~LLsGs~D~~V~l~D~R~~~--~s-------- 322 (463)
T KOG0270|consen 278 PKSSITHHGKKVQTLEWHPYE-------------------------PSVLLSGSYDGTVALKDCRDPS--NS-------- 322 (463)
T ss_pred cceehhhcCCceeEEEecCCC-------------------------ceEEEeccccceEEeeeccCcc--cc--------
Confidence 566778899999999999865 4689999999999999998411 00
Q ss_pred cccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCC-EEEEEecCCeEEEEECCC-CceEEEEeCCCCCeEEEEEec
Q 000268 515 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR-FVLAAIMDCRICVWNAAD-GSLVHSLTGHTESTYVLDVHP 592 (1757)
Q Consensus 515 ~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~-~LaSGs~DG~I~IWDl~t-gkll~~L~gH~~~VtsLafSP 592 (1757)
.......+.|-.++|.|... .++++..||+|+-+|++. |+++.+++.|.+.|.+|++++
T Consensus 323 -------------------~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~ 383 (463)
T KOG0270|consen 323 -------------------GKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNI 383 (463)
T ss_pred -------------------CceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecC
Confidence 11122346788899998765 466788999999999987 599999999999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceEEEEe--ecCcceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcccc
Q 000268 593 FNPRIAMSAGYDGKTIVWDIWEGIPIRIYE--ISRFRLVDGKFSPDGA-SIILSDDVGQLYILNTGQGESQK 661 (1757)
Q Consensus 593 dd~~lLaSgs~DG~IrIWDl~tg~~l~~l~--~~~~~VtslafSPDGk-~LAsgs~DG~I~IWdl~tGe~~~ 661 (1757)
..+.+++|++.|+.|++|++.......... -.-+...|.++.|+-. +||.|+..+.++|||+.++....
T Consensus 384 ~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 384 QTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred CCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 888999999999999999986544322211 1122356778888765 56678888899999998876543
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-15 Score=169.36 Aligned_cols=269 Identities=21% Similarity=0.343 Sum_probs=202.2
Q ss_pred CceEEEEecCCCe--E-EEEEecCCCCeEEEEEcCCCC-EEEEEeCC-------ceEEEEECCCC---------CceEEe
Q 000268 264 DRLVKIWSMETAY--C-LASCRGHEGDITDLAVSSNNA-LVASASND-------CIIRVWRLPDG---------LPISVL 323 (1757)
Q Consensus 264 DGtIkIWDl~tg~--~-l~tL~gH~~~VtsLafSPDg~-lLASgS~D-------GtIrVWDl~tg---------~~l~~l 323 (1757)
|+.|.+.++..+. + -..|..|.+.|+.|+-+|-.. +|+++..+ ..+.||.+... +++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 6788887775432 2 234667889999999999655 55555432 34789988532 344445
Q ss_pred c-CCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCcc-ceeecCCCCccccCCCCCCCCCCCCCCcceEEEEEC
Q 000268 324 R-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS-PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFN 401 (1757)
Q Consensus 324 ~-gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~-~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafS 401 (1757)
. .+-+.|.|+.|.|++. .|++-. |..|.+|++..+..+ ..+.. .....+....++-+|+
T Consensus 119 dteavg~i~cvew~Pns~---klasm~-dn~i~l~~l~ess~~vaev~s---------------s~s~e~~~~ftsg~Ws 179 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSD---KLASMD-DNNIVLWSLDESSKIVAEVLS---------------SESAEMRHSFTSGAWS 179 (370)
T ss_pred CHHHhCceeeEEEcCCCC---eeEEec-cCceEEEEcccCcchheeecc---------------cccccccceecccccC
Confidence 4 4567999999999876 677665 788999999887652 22211 1112256678888999
Q ss_pred C--CCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCccccccc
Q 000268 402 A--NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWF 479 (1757)
Q Consensus 402 p--dG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~ 479 (1757)
| +|+.+++. .|+++..||+++.+. ....-..|...|..+.|+|+.
T Consensus 180 pHHdgnqv~tt-~d~tl~~~D~RT~~~--------~~sI~dAHgq~vrdlDfNpnk------------------------ 226 (370)
T KOG1007|consen 180 PHHDGNQVATT-SDSTLQFWDLRTMKK--------NNSIEDAHGQRVRDLDFNPNK------------------------ 226 (370)
T ss_pred CCCccceEEEe-CCCcEEEEEccchhh--------hcchhhhhcceeeeccCCCCc------------------------
Confidence 9 77877765 589999999986432 233446788899999999985
Q ss_pred CCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCC-CCEEEEE
Q 000268 480 CHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD-NRFVLAA 558 (1757)
Q Consensus 480 ~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPD-G~~LaSG 558 (1757)
..+|++|+.||.|+|||.+.. ..++..+.+|...|.+|.|.|. .++|++|
T Consensus 227 -q~~lvt~gDdgyvriWD~R~t----------------------------k~pv~el~~HsHWvW~VRfn~~hdqLiLs~ 277 (370)
T KOG1007|consen 227 -QHILVTCGDDGYVRIWDTRKT----------------------------KFPVQELPGHSHWVWAVRFNPEHDQLILSG 277 (370)
T ss_pred -eEEEEEcCCCccEEEEeccCC----------------------------CccccccCCCceEEEEEEecCccceEEEec
Confidence 358999999999999999852 3456677889999999999985 5678899
Q ss_pred ecCCeEEEEECCCC-----------------------------ceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEE
Q 000268 559 IMDCRICVWNAADG-----------------------------SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIV 609 (1757)
Q Consensus 559 s~DG~I~IWDl~tg-----------------------------kll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrI 609 (1757)
+.|..|.+|.+..- ..+.++..|.+.|++++||..++.++|+-++||.+.|
T Consensus 278 ~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 278 GSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred CCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 99999999976421 1345677899999999999999999999999999998
Q ss_pred EeCC
Q 000268 610 WDIW 613 (1757)
Q Consensus 610 WDl~ 613 (1757)
=.+.
T Consensus 358 s~V~ 361 (370)
T KOG1007|consen 358 SSVP 361 (370)
T ss_pred ecCC
Confidence 7764
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-16 Score=188.79 Aligned_cols=273 Identities=22% Similarity=0.278 Sum_probs=198.4
Q ss_pred ccceeEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCC--------CeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 000268 231 QKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET--------AYCLASCRGHEGDITDLAVSSNNALVAS 302 (1757)
Q Consensus 231 ~~~k~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~t--------g~~l~tL~gH~~~VtsLafSPDg~lLAS 302 (1757)
+++..-.+|+.|...|..++|.|....|++++.||+|++|+++. -+.+.+|++|.++|.|+++.+++..+++
T Consensus 282 k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ys 361 (577)
T KOG0642|consen 282 KKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYS 361 (577)
T ss_pred eecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEe
Confidence 34555568999999999999999999999999999999999932 3578899999999999999999999999
Q ss_pred EeCCceEEEEECCCC----------CceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCC
Q 000268 303 ASNDCIIRVWRLPDG----------LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR 372 (1757)
Q Consensus 303 gS~DGtIrVWDl~tg----------~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~ 372 (1757)
|+.||+|+.|++... .....+.||++.|+.+++++... .|++++.||+|++|+...... ..+..
T Consensus 362 gg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~---~Llscs~DgTvr~w~~~~~~~-~~f~~-- 435 (577)
T KOG0642|consen 362 GGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD---RLLSCSSDGTVRLWEPTEESP-CTFGE-- 435 (577)
T ss_pred eccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc---ceeeecCCceEEeeccCCcCc-cccCC--
Confidence 999999999976421 23456789999999999999876 899999999999999875543 11100
Q ss_pred CCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEc
Q 000268 373 PSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 452 (1757)
Q Consensus 373 ~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafS 452 (1757)
....+..+++.|-... ++....+.....+++.+.. -+..+.+.
T Consensus 436 ----------------~~e~g~Plsvd~~ss~--~a~~~~s~~~~~~~~~~~e-------------------v~s~~~~~ 478 (577)
T KOG0642|consen 436 ----------------PKEHGYPLSVDRTSSR--PAHSLASFRFGYTSIDDME-------------------VVSDLLIF 478 (577)
T ss_pred ----------------ccccCCcceEeeccch--hHhhhhhcccccccchhhh-------------------hhhheeec
Confidence 0112223444443222 1111112222222221100 00111111
Q ss_pred cCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCC
Q 000268 453 GCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGP 532 (1757)
Q Consensus 453 pdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~ 532 (1757)
+.. .++..
T Consensus 479 ~s~---------------------------------~~~~~--------------------------------------- 486 (577)
T KOG0642|consen 479 ESS---------------------------------ASPGP--------------------------------------- 486 (577)
T ss_pred ccc---------------------------------CCCcc---------------------------------------
Confidence 100 00000
Q ss_pred ceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000268 533 RQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1757)
Q Consensus 533 ~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl 612 (1757)
.....++.+.+.|.+.+.+++..|+.|+++|..+|++++....|...++++++.| ++-+|++++.||.|++|.+
T Consensus 487 -----~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~-ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 487 -----RRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDP-NGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred -----cccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecC-CCceEEeecCCceeehhhc
Confidence 0113467788899999999999999999999999999999999999999999999 7778899999999999999
Q ss_pred CCCceEEEEeec
Q 000268 613 WEGIPIRIYEIS 624 (1757)
Q Consensus 613 ~tg~~l~~l~~~ 624 (1757)
....++.....|
T Consensus 561 d~k~~~~es~~~ 572 (577)
T KOG0642|consen 561 DVKTCVLESTAH 572 (577)
T ss_pred cchheeeccccc
Confidence 887777655433
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-15 Score=182.85 Aligned_cols=277 Identities=13% Similarity=0.192 Sum_probs=215.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccc
Q 000268 287 DITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSP 366 (1757)
Q Consensus 287 ~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~ 366 (1757)
.|..++|-|||..|+.+..+ .+.|||...|..+.++++|...|+|++|+.+|. .+++|+.|..|.+|...-...+
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGk---rFASG~aDK~VI~W~~klEG~L- 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGK---RFASGSADKSVIIWTSKLEGIL- 88 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCc---eeccCCCceeEEEeccccccee-
Confidence 79999999999988777544 799999999999999999999999999999998 9999999999999986432211
Q ss_pred eeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCc
Q 000268 367 RIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDV 446 (1757)
Q Consensus 367 ~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V 446 (1757)
...|+..|.|+.|+|-...|++++-. ..-+|...... +. -......|
T Consensus 89 ---------------------kYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~----------V~-K~kss~R~ 135 (1081)
T KOG1538|consen 89 ---------------------KYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS----------VS-KHKSSSRI 135 (1081)
T ss_pred ---------------------eeccCCeeeEeecCchHHHhhhcchh-hccccChhhhh----------HH-hhhhheeE
Confidence 12478889999999999889887653 35688774311 11 11123467
Q ss_pred eEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCC
Q 000268 447 NYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQ 526 (1757)
Q Consensus 447 ~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~ 526 (1757)
.+.+|..+| .+|+.|-.+|+|.|-+-....
T Consensus 136 ~~CsWtnDG--------------------------qylalG~~nGTIsiRNk~gEe------------------------ 165 (1081)
T KOG1538|consen 136 ICCSWTNDG--------------------------QYLALGMFNGTISIRNKNGEE------------------------ 165 (1081)
T ss_pred EEeeecCCC--------------------------cEEEEeccCceEEeecCCCCc------------------------
Confidence 788898887 799999999999987543211
Q ss_pred CCCCCCceeecCCCCCeeEEEEcCCC-----CEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEE
Q 000268 527 PPRGGPRQRILPTPRGVNMIVWSLDN-----RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 601 (1757)
Q Consensus 527 ~~~~~~~~~l~~h~~~VtsVafSPDG-----~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSg 601 (1757)
...+.+.-+...+|.+++|+|.. ..+++.....++.+|.+ +|+.+..-+.-.-.-.|+.+.+ ++.+++.|
T Consensus 166 ---k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~-NGEy~LiG 240 (1081)
T KOG1538|consen 166 ---KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFT-NGEYILLG 240 (1081)
T ss_pred ---ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhheecc-CCcEEEEc
Confidence 11223334467789999999964 46788888888888887 4665553333333456889999 77788889
Q ss_pred eCCCcEEEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 000268 602 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 657 (1757)
Q Consensus 602 s~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~tG 657 (1757)
|.|+.+.+|-- .|..+.++......|+.++..|++++++.|+.||+|..|++...
T Consensus 241 Gsdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 241 GSDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFS 295 (1081)
T ss_pred cCCCceEEEee-cCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHh
Confidence 99999999975 78888888777778999999999999999999999999997643
|
|
| >cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.1e-17 Score=165.67 Aligned_cols=103 Identities=18% Similarity=0.266 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhc
Q 000268 1644 NRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYF 1723 (1757)
Q Consensus 1644 ~r~kLls~l~kle~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn 1723 (1757)
...++..++.++. .....+.|..+++....|+||++|+.||||+||++||++++|+++++|+.||++||+||.+||
T Consensus 13 ~~~~c~~il~~l~----~~~~s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN 88 (115)
T cd05504 13 NLSALEQLLVEIV----KHKDSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYN 88 (115)
T ss_pred HHHHHHHHHHHHH----hCCCchhhcCCCCccccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 4445555555553 346778888888888899999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCCC
Q 000268 1724 GRNTDLSTKIKRLSDLVTRTLSSLKAP 1750 (1757)
Q Consensus 1724 ~~~s~i~~~a~~l~~~~~~~l~~~~~~ 1750 (1757)
+++|.++++|..|+++|.++++++.+|
T Consensus 89 ~~~s~i~~~A~~l~~~f~~~~~~~~~~ 115 (115)
T cd05504 89 PEHTSVYKAGTRLQRFFIKRCRKLGLP 115 (115)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999998764
|
Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-15 Score=169.67 Aligned_cols=287 Identities=19% Similarity=0.241 Sum_probs=206.3
Q ss_pred eEEEEEcCCCCEEEEEeCCceEEEEECCCC-------Cc-----eEEec-CCCCceEEEEecCC----CCceEEEEEEeC
Q 000268 288 ITDLAVSSNNALVASASNDCIIRVWRLPDG-------LP-----ISVLR-GHTAAVTAIAFSPR----PGSVYQLLSSSD 350 (1757)
Q Consensus 288 VtsLafSPDg~lLASgS~DGtIrVWDl~tg-------~~-----l~~l~-gH~~~VtsLafSPd----g~~~~~LaSgs~ 350 (1757)
...+.|+|||..|++-+.|..+.+|++... .. ...++ .....|...+|-+. .....++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 446789999999999999999999998521 11 11111 12456777777531 112238999999
Q ss_pred CCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCC
Q 000268 351 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD 430 (1757)
Q Consensus 351 DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~ 430 (1757)
+.-|.+||.-+|++...+..-...+ .-....+++|+|||..|++|. ...|+|||+..+......
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~d---------------e~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~v 195 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQD---------------EYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPV 195 (406)
T ss_pred cCceeeeeccccccccchhhhhhHH---------------hhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcc
Confidence 9999999999998655442211110 112356899999999999875 678999999433221111
Q ss_pred CCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccc
Q 000268 431 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510 (1757)
Q Consensus 431 ~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w 510 (1757)
.+ .....-.+..+-|.+++|+|.. ...+++|+....+-|+.-..
T Consensus 196 y~-t~~~~k~gq~giisc~a~sP~~-------------------------~~~~a~gsY~q~~giy~~~~---------- 239 (406)
T KOG2919|consen 196 YT-TVTKGKFGQKGIISCFAFSPMD-------------------------SKTLAVGSYGQRVGIYNDDG---------- 239 (406)
T ss_pred hh-hhhcccccccceeeeeeccCCC-------------------------CcceeeecccceeeeEecCC----------
Confidence 00 0111123446778899999864 24788898888888876553
Q ss_pred cccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEe-cCCeEEEEECCC-CceEEEEeCCCC-CeEE
Q 000268 511 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAAD-GSLVHSLTGHTE-STYV 587 (1757)
Q Consensus 511 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs-~DG~I~IWDl~t-gkll~~L~gH~~-~Vts 587 (1757)
..++..+.+|.++|+.++|.++|..|++|. .|-.|..||++. +.++..|..|.+ .-..
T Consensus 240 -------------------~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQR 300 (406)
T KOG2919|consen 240 -------------------RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQR 300 (406)
T ss_pred -------------------CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccce
Confidence 345666778999999999999999999987 467899999975 567777877766 3333
Q ss_pred EEE--ecCCCcEEEEEeCCCcEEEEeCCC-CceEEEEeecCcceEEEEEcCCCCEEEEEeCC
Q 000268 588 LDV--HPFNPRIAMSAGYDGKTIVWDIWE-GIPIRIYEISRFRLVDGKFSPDGASIILSDDV 646 (1757)
Q Consensus 588 Laf--SPdd~~lLaSgs~DG~IrIWDl~t-g~~l~~l~~~~~~VtslafSPDGk~LAsgs~D 646 (1757)
|.| .| .+.+|++|+.||.|++||+.+ |..+..+..+...+..+++.|--.++|+++..
T Consensus 301 I~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 301 ILFDLDP-KGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred EEEecCC-CCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 444 56 678999999999999999998 78788887788889999999998888877653
|
|
| >cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.9e-17 Score=160.06 Aligned_cols=94 Identities=14% Similarity=0.304 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhcCCC
Q 000268 1647 KLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRN 1726 (1757)
Q Consensus 1647 kLls~l~kle~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~~~ 1726 (1757)
++..++.++ ...+..+.|..+++....|+||++|+.||||+||++||+++.|.++++|..|++|||.||.+||+++
T Consensus 4 ~c~~il~~l----~~~~~s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05505 4 KCEEILSKI----LKYRFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENG 79 (97)
T ss_pred HHHHHHHHH----HhCCCcccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 344444444 2356778899988888899999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 000268 1727 TDLSTKIKRLSDLVTRTL 1744 (1757)
Q Consensus 1727 s~i~~~a~~l~~~~~~~l 1744 (1757)
+.|+.+|.+|+++|.++|
T Consensus 80 s~i~~~a~~le~~f~~~~ 97 (97)
T cd05505 80 SYVLSCMRKTEQCCVNLL 97 (97)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999998864
|
The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.1e-16 Score=173.23 Aligned_cols=276 Identities=16% Similarity=0.333 Sum_probs=201.7
Q ss_pred cCCCCEEEEEECCCC----CEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCC-CEEEEEeCCceEEEEECC
Q 000268 241 GHRNAVYCAIFDRSG----RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNN-ALVASASNDCIIRVWRLP 315 (1757)
Q Consensus 241 GH~~~V~~VaFSPDG----~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg-~lLASgS~DGtIrVWDl~ 315 (1757)
.|....+.++|+-+- .+||.|+.-|.|+|.|+.++++...+.+|...|..|.|.|+. ++|++++.|.+|++|+++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 477888999997643 478999999999999999999999999999999999999976 589999999999999999
Q ss_pred CCCceEEe---cCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCC--Ccccc-----CCCCCC-
Q 000268 316 DGLPISVL---RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP--SDAVA-----GRNMAP- 384 (1757)
Q Consensus 316 tg~~l~~l---~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~--~~~~~-----g~~~~~- 384 (1757)
+..++..+ .||.+.|.++.|++++. +|+++|.|.+|++|++...++...+....+ ..... .....+
T Consensus 167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd---~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~ 243 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVLSVDFSLDGD---RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPD 243 (385)
T ss_pred CCeEEEEecccccccCcEEEEEEcCCCC---eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccc
Confidence 99999987 47999999999999998 999999999999999986554333321100 00000 000011
Q ss_pred CCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCC-----CCCCCCcceeeecCCCCCceEEEEccCccccc
Q 000268 385 SSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTD-----DSDQPNHEIDVLSGHENDVNYVQFSGCAVASR 459 (1757)
Q Consensus 385 ~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~-----~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~ 459 (1757)
..+..-|...|-|+.|- |.++++-+-++.|..|........ ........+..+......|+-+.|.-+.
T Consensus 244 fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~---- 317 (385)
T KOG1034|consen 244 FSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP---- 317 (385)
T ss_pred ccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH----
Confidence 12345577778888885 578899888999999987321110 0111122334445556667777766432
Q ss_pred cccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCC
Q 000268 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT 539 (1757)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h 539 (1757)
..+.||.|...|.|.+||++..... ......-...
T Consensus 318 --------------------~~~~la~gnq~g~v~vwdL~~~ep~-------------------------~~ttl~~s~~ 352 (385)
T KOG1034|consen 318 --------------------WQKMLALGNQSGKVYVWDLDNNEPP-------------------------KCTTLTHSKS 352 (385)
T ss_pred --------------------HHHHHhhccCCCcEEEEECCCCCCc-------------------------cCceEEeccc
Confidence 1368999999999999999963311 0111111123
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEECC
Q 000268 540 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAA 570 (1757)
Q Consensus 540 ~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~ 570 (1757)
...|...+||.||.+|+..+.|++|.-||..
T Consensus 353 ~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 353 GSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 3568999999999999999999999999863
|
|
| >cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.1e-17 Score=159.10 Aligned_cols=93 Identities=15% Similarity=0.209 Sum_probs=82.7
Q ss_pred HHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhcCCCcHHH
Q 000268 1651 AFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLS 1730 (1757)
Q Consensus 1651 ~l~kle~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~~~s~i~ 1730 (1757)
.+..+.+.+. +..++.|..+++....|+|+.+|+.||||+||++||+++.|+++++|..||+||++||.+||++++.++
T Consensus 7 ~L~~~~~~~~-~~~s~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~~~s~i~ 85 (99)
T cd05508 7 LLKFALERMK-QPGAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNGGDHKLT 85 (99)
T ss_pred HHHHHHHHHh-CcCcchhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 3333333333 577889999999889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 000268 1731 TKIKRLSDLVTRTL 1744 (1757)
Q Consensus 1731 ~~a~~l~~~~~~~l 1744 (1757)
.+|+.|.+++.+.|
T Consensus 86 ~~A~~l~~~~~~e~ 99 (99)
T cd05508 86 QAAKAIVKICEQEM 99 (99)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999988653
|
RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-16 Score=160.30 Aligned_cols=100 Identities=17% Similarity=0.222 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhc
Q 000268 1644 NRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYF 1723 (1757)
Q Consensus 1644 ~r~kLls~l~kle~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn 1723 (1757)
.|.+++..+.++.. +..++.|..+++....|+|+++|+.||||+||++||+++.|+++++|..|+++|++||.+||
T Consensus 4 ~~~~~~~il~~l~~----~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 79 (104)
T cd05507 4 WKKAILLVYRTLAS----HRYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYN 79 (104)
T ss_pred HHHHHHHHHHHHHc----CCCCHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 46777888777743 56678888888888899999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCC
Q 000268 1724 GRNTDLSTKIKRLSDLVTRTLSSL 1747 (1757)
Q Consensus 1724 ~~~s~i~~~a~~l~~~~~~~l~~~ 1747 (1757)
++++.++.+|+.|++.+.+.|..+
T Consensus 80 ~~~s~v~~~A~~l~~~~~~~~~~~ 103 (104)
T cd05507 80 SSDHDVYLMAVEMQREVMSQIQQL 103 (104)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999998754
|
In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.5e-17 Score=163.96 Aligned_cols=101 Identities=14% Similarity=0.235 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhc
Q 000268 1644 NRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYF 1723 (1757)
Q Consensus 1644 ~r~kLls~l~kle~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn 1723 (1757)
.+..+...+..+. .+...+.|..+++....|+|+++|++||||+||++||++++|.++++|..||+|||.||++||
T Consensus 6 w~~~c~~il~~l~----~~~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN 81 (119)
T cd05496 6 WKKQCKELVNLMW----DCEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYT 81 (119)
T ss_pred HHHHHHHHHHHHH----hCCccccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 3444555555553 456788999999988899999999999999999999999999999999999999999999999
Q ss_pred CC-CcHHHHHHHHHHHHHHHHHhCCC
Q 000268 1724 GR-NTDLSTKIKRLSDLVTRTLSSLK 1748 (1757)
Q Consensus 1724 ~~-~s~i~~~a~~l~~~~~~~l~~~~ 1748 (1757)
++ ++.|+.+|..|+++|.++++++.
T Consensus 82 ~~~~s~i~~~a~~L~~~F~~~~~~l~ 107 (119)
T cd05496 82 PNKRSRIYSMTLRLSALFEEHIKKII 107 (119)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 85 99999999999999999988763
|
WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-14 Score=182.72 Aligned_cols=288 Identities=17% Similarity=0.231 Sum_probs=208.9
Q ss_pred ceEEEEECCCC-CceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCC
Q 000268 307 CIIRVWRLPDG-LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS 385 (1757)
Q Consensus 307 GtIrVWDl~tg-~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~ 385 (1757)
+.+.||++... .+-..+. -...|++++|+|... .+|+.|+.+|.|.+||++.+...... ...
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p--~ll~gG~y~GqV~lWD~~~~~~~~~s--------------~ls 284 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDP--NLLAGGCYNGQVVLWDLRKGSDTPPS--------------GLS 284 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCc--ceEEeeccCceEEEEEccCCCCCCCc--------------ccc
Confidence 47999999876 4444444 568899999999865 48999999999999999987643211 112
Q ss_pred CCCCCCCcceEEEEECCCCC--EEEEeeCCceEEEecCCCCCCCCCCCCCcce---eeecCCCCCceEEEEccCcccccc
Q 000268 386 SSAGPQSHQIFCCAFNANGT--VFVTGSSDTLARVWNACKPNTDDSDQPNHEI---DVLSGHENDVNYVQFSGCAVASRF 460 (1757)
Q Consensus 386 ~~~~~~~~~V~slafSpdG~--~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i---~~l~gH~~~V~sLafSpdg~~s~~ 460 (1757)
.....|...++.+.|..+-. -|++++.||.|..|+++.-............ ..-......++++.|.+.-
T Consensus 285 ~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~----- 359 (555)
T KOG1587|consen 285 ALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD----- 359 (555)
T ss_pred cccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCC-----
Confidence 33456888899999977544 4999999999999988654321111111000 0011223456777777643
Q ss_pred ccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCC
Q 000268 461 SLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP 540 (1757)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~ 540 (1757)
...++.|+.+|.|..-+-...+.... ...........|.
T Consensus 360 --------------------p~~FiVGTe~G~v~~~~r~g~~~~~~---------------------~~~~~~~~~~~h~ 398 (555)
T KOG1587|consen 360 --------------------PNHFIVGTEEGKVYKGCRKGYTPAPE---------------------VSYKGHSTFITHI 398 (555)
T ss_pred --------------------CceEEEEcCCcEEEEEeccCCccccc---------------------ccccccccccccC
Confidence 46899999999987733222110000 0112233556788
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEECC-CCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC--ce
Q 000268 541 RGVNMIVWSLDNRFVLAAIMDCRICVWNAA-DGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG--IP 617 (1757)
Q Consensus 541 ~~VtsVafSPDG~~LaSGs~DG~I~IWDl~-tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg--~~ 617 (1757)
+.|.++.++|-+..++..+.|.+|+||... ...++..+..+...|++++|||....+++++..||.|.|||+... .+
T Consensus 399 g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P 478 (555)
T KOG1587|consen 399 GPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP 478 (555)
T ss_pred cceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC
Confidence 999999999999877776679999999987 777888888888889999999988899999999999999999754 34
Q ss_pred EEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 000268 618 IRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 657 (1757)
Q Consensus 618 l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~tG 657 (1757)
+.+...+......+.|++.|+.|++|+..|++++|++..+
T Consensus 479 v~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 479 VLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred cccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 4444444455667899999999999999999999999653
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.2e-15 Score=172.03 Aligned_cols=294 Identities=19% Similarity=0.206 Sum_probs=197.5
Q ss_pred cceeEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecC--------C--------CeEEEEEecCCCCeEEEEEcC
Q 000268 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSME--------T--------AYCLASCRGHEGDITDLAVSS 295 (1757)
Q Consensus 232 ~~k~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~--------t--------g~~l~tL~gH~~~VtsLafSP 295 (1757)
+...+..|.+|..+|++|.|+|+|..||+|+++|.|.+|-.. + ......+++|...|..++|+|
T Consensus 54 ~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~ 133 (434)
T KOG1009|consen 54 KVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP 133 (434)
T ss_pred eEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC
Confidence 456778899999999999999999999999999999999765 3 344567889999999999999
Q ss_pred CCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCC-CC
Q 000268 296 NNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR-PS 374 (1757)
Q Consensus 296 Dg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~-~~ 374 (1757)
++.++++++.|..+++||+..|..+..+..|...|..++|.|-++ ++++-+.|...+.+.+...+.+....... +.
T Consensus 134 d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~q---yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~ 210 (434)
T KOG1009|consen 134 DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQ---YVASKSSDRHPEGFSAKLKQVIKRHGLDIMPA 210 (434)
T ss_pred CCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhh---hhhhhccCcccceeeeeeeeeeeeeeeeEeee
Confidence 999999999999999999999999999999999999999999887 89999999877777776555444332100 00
Q ss_pred ccccCCCCCC--CCCCCCCCcceEEEEECCCCCEEEEeeC----Cce-----EEEecCCCCCCCCCCCCCcceeeecCCC
Q 000268 375 DAVAGRNMAP--SSSAGPQSHQIFCCAFNANGTVFVTGSS----DTL-----ARVWNACKPNTDDSDQPNHEIDVLSGHE 443 (1757)
Q Consensus 375 ~~~~g~~~~~--~~~~~~~~~~V~slafSpdG~~LasGs~----DG~-----IrVWDl~t~~~~~s~~~~~~i~~l~gH~ 443 (1757)
.......... .............++|+|+|.++++... .+. .++|+-. ...+++..+.+-.
T Consensus 211 ~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk--------~l~rP~~~lp~~~ 282 (434)
T KOG1009|consen 211 KAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRK--------DLKRPAARLPSPK 282 (434)
T ss_pred cccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccc--------cccCceeecCCCC
Confidence 0000000000 0001112233557899999999988642 111 1222211 1122233333333
Q ss_pred CCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCC
Q 000268 444 NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPM 523 (1757)
Q Consensus 444 ~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~ 523 (1757)
..+..+.|+|- .|.++...
T Consensus 283 k~~lavr~~pV----------------------------------------y~elrp~~--------------------- 301 (434)
T KOG1009|consen 283 KPALAVRFSPV----------------------------------------YYELRPLS--------------------- 301 (434)
T ss_pred cceEEEEeeee----------------------------------------EEEecccc---------------------
Confidence 33344444331 12111000
Q ss_pred CCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEe-CCCCCeEEEEEecCCCcEEEEEe
Q 000268 524 PPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT-GHTESTYVLDVHPFNPRIAMSAG 602 (1757)
Q Consensus 524 ~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~-gH~~~VtsLafSPdd~~lLaSgs 602 (1757)
.... +.--|-+-.+|.++. ..|+|||.++-.++.... -|-..|+.++|++ ++.+++..+
T Consensus 302 ----------------~~~~--~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaws~-dg~~l~vSS 361 (434)
T KOG1009|consen 302 ----------------SEKF--LFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSD-DGSVLLVSS 361 (434)
T ss_pred ----------------cccc--ccccccceEEEEeec-ceEEEeccccccceEEEeeeeeeeecceeecC-CCcEEEEec
Confidence 0000 111133444555655 489999999988877654 5888999999999 677777788
Q ss_pred CCCcEEEEeCCCCce
Q 000268 603 YDGKTIVWDIWEGIP 617 (1757)
Q Consensus 603 ~DG~IrIWDl~tg~~ 617 (1757)
.||...+-.+...++
T Consensus 362 ~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 362 TDGFCSLVTFEPWEL 376 (434)
T ss_pred cCCceEEEEEcchhc
Confidence 999888877755544
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-15 Score=167.93 Aligned_cols=302 Identities=14% Similarity=0.165 Sum_probs=205.7
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEec-CCCCceEEEEecCCCCceEEEEEEeCCCcEE
Q 000268 277 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355 (1757)
Q Consensus 277 ~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~-gH~~~VtsLafSPdg~~~~~LaSgs~DGtIr 355 (1757)
+...+++|.+.|+++.|..++. |.+|..-|.|++|++.+.+.+..++ .|...|+.+.-.|++ .|.+-+.|+.+.
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d----~l~tqgRd~~L~ 80 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND----SLDTQGRDPLLI 80 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCc----chhhcCCCceEE
Confidence 4567789999999999998774 8899999999999999999888888 577889999999975 699999999999
Q ss_pred EEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECC-----CCC----EEEEeeCCc-eEEEecCCCCC
Q 000268 356 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-----NGT----VFVTGSSDT-LARVWNACKPN 425 (1757)
Q Consensus 356 IWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSp-----dG~----~LasGs~DG-~IrVWDl~t~~ 425 (1757)
+|++..+..+..-.+ .+.++.|.+ .++ .++.-+... .+.+-|.....
T Consensus 81 lw~ia~s~~i~i~Si-----------------------~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~t 137 (323)
T KOG0322|consen 81 LWTIAYSAFISIHSI-----------------------VVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTT 137 (323)
T ss_pred EEEccCcceEEEeee-----------------------eccccccccceeccCCCcchhheecCCcccchhhhhccCccc
Confidence 999987654433211 122222221 111 111100000 01111111000
Q ss_pred CCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCc
Q 000268 426 TDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHP 505 (1757)
Q Consensus 426 ~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~ 505 (1757)
.. .-.-..-.+..+.|.+..+...- ...-.++.|-.+|.+.+||+.++....
T Consensus 138 qv-----~i~dd~~~~Klgsvmc~~~~~~c-----------------------~s~~lllaGyEsghvv~wd~S~~~~~~ 189 (323)
T KOG0322|consen 138 QV-----QIADDSERSKLGSVMCQDKDHAC-----------------------GSTFLLLAGYESGHVVIWDLSTGDKII 189 (323)
T ss_pred ee-----EccCchhccccCceeeeeccccc-----------------------cceEEEEEeccCCeEEEEEccCCceee
Confidence 00 00000011223334444322110 001267788999999999999753111
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCC--CceE--EEEeCC
Q 000268 506 KAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD--GSLV--HSLTGH 581 (1757)
Q Consensus 506 ~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~t--gkll--~~L~gH 581 (1757)
.+ +...........|..+|.++.|.+.-..=++|+.+..+..|++.. |.+. ..+.-.
T Consensus 190 ~~-------------------~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lk 250 (323)
T KOG0322|consen 190 QL-------------------PQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLK 250 (323)
T ss_pred cc-------------------ccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEec
Confidence 00 111223344567889999999988777778888888999998854 3321 222323
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 000268 582 TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 654 (1757)
Q Consensus 582 ~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl 654 (1757)
.-.|..+.+-| |++++||+|+|+.|+||+..+.+++..+..|...|.+++|+||...+|+++.|++|.+|++
T Consensus 251 npGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 251 NPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 34578888989 8899999999999999999999999999999999999999999999999999999999986
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.5e-15 Score=184.57 Aligned_cols=292 Identities=16% Similarity=0.249 Sum_probs=211.2
Q ss_pred CCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecC---CCCeEEEEEcC--CCCEEEEEeCCceEEEEEC-CC
Q 000268 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGH---EGDITDLAVSS--NNALVASASNDCIIRVWRL-PD 316 (1757)
Q Consensus 243 ~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH---~~~VtsLafSP--Dg~lLASgS~DGtIrVWDl-~t 316 (1757)
...-..+.|+|-...++++.+.-.|+|||.+.++.+..|..+ ...|+.|.+-. |..+|++|+.||.|+||+- .+
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 334567889998899999988889999999999998877643 45788888875 4558999999999999963 22
Q ss_pred C----CceEEecCC-------CCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCC
Q 000268 317 G----LPISVLRGH-------TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS 385 (1757)
Q Consensus 317 g----~~l~~l~gH-------~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~ 385 (1757)
+ +.+..+.+- .+.=.-+.|..... +|+++|.-..|+|||+....+...+..
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G---~Ll~tGd~r~IRIWDa~~E~~~~diP~--------------- 1205 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG---HLLVTGDVRSIRIWDAHKEQVVADIPY--------------- 1205 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCCeeeehhhhCC---eEEecCCeeEEEEEecccceeEeeccc---------------
Confidence 2 233322211 11113356766655 777777789999999987766555432
Q ss_pred CCCCCCCcceEEEEECC-CCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCC--ceEEEEccCcccccccc
Q 000268 386 SSAGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEND--VNYVQFSGCAVASRFSL 462 (1757)
Q Consensus 386 ~~~~~~~~~V~slafSp-dG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~--V~sLafSpdg~~s~~~~ 462 (1757)
+....|+++.-+- .|+.|++|..||.|++||.+.... ...+.....|... |..+.+.+.|.
T Consensus 1206 ----~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~------ds~v~~~R~h~~~~~Iv~~slq~~G~------ 1269 (1387)
T KOG1517|consen 1206 ----GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP------DSLVCVYREHNDVEPIVHLSLQRQGL------ 1269 (1387)
T ss_pred ----CCCccceeecccccCCceEEEeecCCceEEeecccCCc------cccceeecccCCcccceeEEeecCCC------
Confidence 1233455555433 579999999999999999986432 3466777888887 99999988762
Q ss_pred ccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCC--C
Q 000268 463 ADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT--P 540 (1757)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h--~ 540 (1757)
..|++|+.+|.|.+||++..... ........- .
T Consensus 1270 -------------------~elvSgs~~G~I~~~DlR~~~~e--------------------------~~~~iv~~~~yG 1304 (1387)
T KOG1517|consen 1270 -------------------GELVSGSQDGDIQLLDLRMSSKE--------------------------TFLTIVAHWEYG 1304 (1387)
T ss_pred -------------------cceeeeccCCeEEEEecccCccc--------------------------ccceeeeccccC
Confidence 47999999999999999952100 000001111 2
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCC-------CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000268 541 RGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH-------TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1757)
Q Consensus 541 ~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH-------~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~ 613 (1757)
+.++++..++....||+|+. +.|+||++. |+.+..++.+ .+.+.|++||| -.-++|+|..|.+|.||...
T Consensus 1305 s~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1305 SALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred ccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecC
Confidence 24899999999999999998 999999984 5555554432 34679999999 66788889999999999876
Q ss_pred CCc
Q 000268 614 EGI 616 (1757)
Q Consensus 614 tg~ 616 (1757)
.+.
T Consensus 1382 k~~ 1384 (1387)
T KOG1517|consen 1382 KPR 1384 (1387)
T ss_pred CcC
Confidence 543
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.4e-15 Score=169.75 Aligned_cols=281 Identities=17% Similarity=0.275 Sum_probs=207.8
Q ss_pred CEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccc
Q 000268 298 ALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAV 377 (1757)
Q Consensus 298 ~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~ 377 (1757)
..+|++...|.|++||..+|+.+..++++...+..+.|.... .++.+++++.||+|++||++......++.....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~d-s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~---- 115 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCD-SPHGVISCSSDGTVRLWDIRSQAESARISWTQQ---- 115 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCC-CCCeeEEeccCCeEEEEEeecchhhhheeccCC----
Confidence 578889999999999999999999999999999999998863 345899999999999999998776655532111
Q ss_pred cCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeC----CceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEcc
Q 000268 378 AGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS----DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSG 453 (1757)
Q Consensus 378 ~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~----DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSp 453 (1757)
......|++..-.++.+++|+. +-.|.+||++.... + .-.....|...|+.|.|.|
T Consensus 116 -------------~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq-----~--l~~~~eSH~DDVT~lrFHP 175 (376)
T KOG1188|consen 116 -------------SGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQ-----L--LRQLNESHNDDVTQLRFHP 175 (376)
T ss_pred -------------CCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccc-----h--hhhhhhhccCcceeEEecC
Confidence 1345677777778888888863 67899999986322 1 2234578999999999999
Q ss_pred CccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCc
Q 000268 454 CAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPR 533 (1757)
Q Consensus 454 dg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~ 533 (1757)
.. +++|++||.||.|.|||+... .....+
T Consensus 176 ~~-------------------------pnlLlSGSvDGLvnlfD~~~d--------------------------~EeDaL 204 (376)
T KOG1188|consen 176 SD-------------------------PNLLLSGSVDGLVNLFDTKKD--------------------------NEEDAL 204 (376)
T ss_pred CC-------------------------CCeEEeecccceEEeeecCCC--------------------------cchhhH
Confidence 75 589999999999999998841 122334
Q ss_pred eeecCCCCCeeEEEEcCCC-CEEEEEecCCeEEEEECCCCceEEEEeCCC----------CCeEEE-EEecCCCcEEEEE
Q 000268 534 QRILPTPRGVNMIVWSLDN-RFVLAAIMDCRICVWNAADGSLVHSLTGHT----------ESTYVL-DVHPFNPRIAMSA 601 (1757)
Q Consensus 534 ~~l~~h~~~VtsVafSPDG-~~LaSGs~DG~I~IWDl~tgkll~~L~gH~----------~~VtsL-afSPdd~~lLaSg 601 (1757)
.....+...|.++.|..++ +.|.+-+...+..+|++..+.....+.... .--+-| +.+|-+..+++.+
T Consensus 205 ~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~ 284 (376)
T KOG1188|consen 205 LHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALA 284 (376)
T ss_pred HHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEe
Confidence 4556677889999998877 458888888999999999887655443220 000111 2235444555555
Q ss_pred eC-CCcEEEEeCC---C---CceEEEEeecCc-ceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 000268 602 GY-DGKTIVWDIW---E---GIPIRIYEISRF-RLVDGKFSPDGASIILSDDVGQLYILNT 654 (1757)
Q Consensus 602 s~-DG~IrIWDl~---t---g~~l~~l~~~~~-~VtslafSPDGk~LAsgs~DG~I~IWdl 654 (1757)
+. -+...++-+. + ++.+..+.+++. -|.++.|...+.+|.+|+.||.|.+|..
T Consensus 285 g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 285 GTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 54 5566655443 2 355566666554 4567888888999999999999999996
|
|
| >cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-16 Score=159.51 Aligned_cols=102 Identities=11% Similarity=0.186 Sum_probs=87.9
Q ss_pred HHHHHHHHHHhhhccc-ccccccccccccccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhcCC
Q 000268 1647 KLLSAFAKLEQSANRV-QDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGR 1725 (1757)
Q Consensus 1647 kLls~l~kle~~~~~~-~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~~ 1725 (1757)
.++..+.++......+ ..++.|..+++....|+||++|+.||||+||++||+++.|.++++|..|++|||+||..||++
T Consensus 7 ~~~~~~~~il~~l~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~yN~~ 86 (112)
T cd05510 7 EFYESLDKVLNELKTYTEHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLYNSD 86 (112)
T ss_pred HHHHHHHHHHHHHHhcCccccchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 3444444444444444 567888999988899999999999999999999999999999999999999999999999998
Q ss_pred Cc-HHHHHHHHHHHHHHHHHhCCC
Q 000268 1726 NT-DLSTKIKRLSDLVTRTLSSLK 1748 (1757)
Q Consensus 1726 ~s-~i~~~a~~l~~~~~~~l~~~~ 1748 (1757)
++ .++++|+.|++.|.+.|..++
T Consensus 87 ~s~~~~~~A~~l~~~~~~~~~~~~ 110 (112)
T cd05510 87 PSHPLRRHANFMKKKAEHLLKLIP 110 (112)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCC
Confidence 76 678999999999999998875
|
SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.7e-16 Score=157.41 Aligned_cols=96 Identities=20% Similarity=0.379 Sum_probs=86.1
Q ss_pred HHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhcCCCcHHHH
Q 000268 1652 FAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLST 1731 (1757)
Q Consensus 1652 l~kle~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~~~s~i~~ 1731 (1757)
+..+......+...+.|..+++....|+|+++|++||||+||++||++++|+++++|..||++|++||.+||++++.+++
T Consensus 6 ~~~il~~l~~~~~a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~~ 85 (101)
T cd05509 6 LKKVLDSLKNHKSAWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGPDTEYYK 85 (101)
T ss_pred HHHHHHHHHhCCCchhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 33444444446677888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCC
Q 000268 1732 KIKRLSDLVTRTLSSL 1747 (1757)
Q Consensus 1732 ~a~~l~~~~~~~l~~~ 1747 (1757)
+|..|+++|.++|+++
T Consensus 86 ~a~~l~~~f~~~~~~~ 101 (101)
T cd05509 86 CANKLEKFFWKKLKEL 101 (101)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999999999864
|
Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.2e-15 Score=164.38 Aligned_cols=279 Identities=20% Similarity=0.269 Sum_probs=197.9
Q ss_pred EEEccCCCCEEEEEECCCC-CEEEEEcCC-------ceEEEEecCC---------CeEEEEEe-cCCCCeEEEEEcCCCC
Q 000268 237 KRVRGHRNAVYCAIFDRSG-RYVITGSDD-------RLVKIWSMET---------AYCLASCR-GHEGDITDLAVSSNNA 298 (1757)
Q Consensus 237 ~tL~GH~~~V~~VaFSPDG-~~LATGS~D-------GtIkIWDl~t---------g~~l~tL~-gH~~~VtsLafSPDg~ 298 (1757)
++|..|.+.|+.++-+|.. +.|+|+-.+ ..+.||.+.. .+++..|. .+-+.|.|+.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 4577899999999999955 455555331 3578998743 23444444 4567999999999999
Q ss_pred EEEEEeCCceEEEEECCCCCc-eEEec-----CCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCC
Q 000268 299 LVASASNDCIIRVWRLPDGLP-ISVLR-----GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR 372 (1757)
Q Consensus 299 lLASgS~DGtIrVWDl~tg~~-l~~l~-----gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~ 372 (1757)
.||+-. |..|.+|++..+.. ++.+. +|....++-+|+|.... .-+.+..|+++..||+++......+
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdg--nqv~tt~d~tl~~~D~RT~~~~~sI---- 209 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDG--NQVATTSDSTLQFWDLRTMKKNNSI---- 209 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCcc--ceEEEeCCCcEEEEEccchhhhcch----
Confidence 998876 78999999988755 44332 35667888999994332 3444556899999999987765544
Q ss_pred CCccccCCCCCCCCCCCCCCcceEEEEECCCCC-EEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEE
Q 000268 373 PSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT-VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQF 451 (1757)
Q Consensus 373 ~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~-~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLaf 451 (1757)
...|...|..+.|+|+.+ +||+++.||.|+|||.+.. ..++..+.+|...|+++.|
T Consensus 210 ---------------~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t--------k~pv~el~~HsHWvW~VRf 266 (370)
T KOG1007|consen 210 ---------------EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT--------KFPVQELPGHSHWVWAVRF 266 (370)
T ss_pred ---------------hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC--------CccccccCCCceEEEEEEe
Confidence 235788899999999875 6788999999999999864 4468889999999999999
Q ss_pred ccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCC
Q 000268 452 SGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGG 531 (1757)
Q Consensus 452 Spdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~ 531 (1757)
+|.- +.+|++|+.|..|.+|...+-........-...-............+...+
T Consensus 267 n~~h-------------------------dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg 321 (370)
T KOG1007|consen 267 NPEH-------------------------DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDG 321 (370)
T ss_pred cCcc-------------------------ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccc
Confidence 9864 468899999999999987642211111000000000000000111123455
Q ss_pred CceeecCCCCCeeEEEEcCCCCE-EEEEecCCeEEEEECC
Q 000268 532 PRQRILPTPRGVNMIVWSLDNRF-VLAAIMDCRICVWNAA 570 (1757)
Q Consensus 532 ~~~~l~~h~~~VtsVafSPDG~~-LaSGs~DG~I~IWDl~ 570 (1757)
.+.++..|...|.+++||.-..+ +|+-+.||++.|=.+.
T Consensus 322 ~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 322 QLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 66778889999999999987776 5668899999886653
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.3e-15 Score=167.57 Aligned_cols=286 Identities=13% Similarity=0.175 Sum_probs=194.9
Q ss_pred CEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcC--CCCEEEEEeCCceEEEEECCCCCceEE--ecCCC-Cce
Q 000268 256 RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSS--NNALVASASNDCIIRVWRLPDGLPISV--LRGHT-AAV 330 (1757)
Q Consensus 256 ~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSP--Dg~lLASgS~DGtIrVWDl~tg~~l~~--l~gH~-~~V 330 (1757)
..+|++-..|.|+|||..+|+.+..++++...+..+.|.. ....+.+|+.||+|++||+++...... +.++. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5788888999999999999999999999999999999987 456889999999999999987755443 34555 455
Q ss_pred EEEEecCCCCceEEEEEEe----CCCcEEEEecCCCCc-cceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECC-CC
Q 000268 331 TAIAFSPRPGSVYQLLSSS----DDGTCRIWDARYSQF-SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NG 404 (1757)
Q Consensus 331 tsLafSPdg~~~~~LaSgs----~DGtIrIWDl~tg~~-~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSp-dG 404 (1757)
.+++..-.+. .+++|. .+..|.+||++..+. +.. ....|...|+++.|+| +.
T Consensus 121 ~~ld~nck~~---ii~~GtE~~~s~A~v~lwDvR~~qq~l~~-------------------~~eSH~DDVT~lrFHP~~p 178 (376)
T KOG1188|consen 121 ICLDLNCKKN---IIACGTELTRSDASVVLWDVRSEQQLLRQ-------------------LNESHNDDVTQLRFHPSDP 178 (376)
T ss_pred eEeeccCcCC---eEEeccccccCceEEEEEEeccccchhhh-------------------hhhhccCcceeEEecCCCC
Confidence 6666654443 555553 467899999997764 222 2346889999999999 55
Q ss_pred CEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcE
Q 000268 405 TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI 484 (1757)
Q Consensus 405 ~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~L 484 (1757)
++|++|+.||.|.|||+..... ...+.....|...|..+.|...+ -+.|
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~E------eDaL~~viN~~sSI~~igw~~~~-------------------------ykrI 227 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNE------EDALLHVINHGSSIHLIGWLSKK-------------------------YKRI 227 (376)
T ss_pred CeEEeecccceEEeeecCCCcc------hhhHHHhhcccceeeeeeeecCC-------------------------cceE
Confidence 8999999999999999965321 22333445677789999998775 2578
Q ss_pred EEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEec-CCe
Q 000268 485 VTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM-DCR 563 (1757)
Q Consensus 485 vSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~-DG~ 563 (1757)
.+-+..++..+|++..+........- .+ ..........-..-|.+.. .-++.+++.++. -+.
T Consensus 228 ~clTH~Etf~~~ele~~~~~~~~~~~----~~------------~~~d~r~~~~~dY~I~~~~-~~~~~~~~l~g~~~n~ 290 (376)
T KOG1188|consen 228 MCLTHMETFAIYELEDGSEETWLENP----DV------------SADDLRKEDNCDYVINEHS-PGDKDTCALAGTDSNK 290 (376)
T ss_pred EEEEccCceeEEEccCCChhhcccCc----cc------------hhhhHHhhhhhhheeeccc-CCCcceEEEeccccCc
Confidence 99999999999999865422111000 00 0000000000111122221 123334444333 455
Q ss_pred EEEEECC---C---CceEEEEeC-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000268 564 ICVWNAA---D---GSLVHSLTG-HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1757)
Q Consensus 564 I~IWDl~---t---gkll~~L~g-H~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl 612 (1757)
..++-+. + ++.+..+.+ |...|.++.|.. .+.++.|||.||.+.+|..
T Consensus 291 ~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~-~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 291 GTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDV-KNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred eeEEEeeecccccccCccccccCCcHHHHHHHhhhc-ccceeeccCCCceEEEEec
Confidence 5554432 2 344556666 666778888865 6678999999999999986
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.5e-14 Score=163.13 Aligned_cols=299 Identities=14% Similarity=0.150 Sum_probs=217.2
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECC------CCCceEEecC-CCCceEEEEecCCCCceEEEEEEeCC
Q 000268 279 ASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP------DGLPISVLRG-HTAAVTAIAFSPRPGSVYQLLSSSDD 351 (1757)
Q Consensus 279 ~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~------tg~~l~~l~g-H~~~VtsLafSPdg~~~~~LaSgs~D 351 (1757)
+.+.+|.+.|.+|.|+.++++||+|+.|..++||++. +.+++..... |...|.|++|...+. .|++|+.+
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~---~~~SG~~~ 126 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR---FLYSGERW 126 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe---eEecCCCc
Confidence 3456899999999999999999999999999999985 3466666544 458999999998765 89999999
Q ss_pred CcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCC
Q 000268 352 GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQ 431 (1757)
Q Consensus 352 GtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~ 431 (1757)
++|.+-|+.+.+.+..+.. ....+.|+.+..+|..+.|++.+.++.|.+||.+... .
T Consensus 127 ~~VI~HDiEt~qsi~V~~~------------------~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~-----~ 183 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANE------------------NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ-----N 183 (609)
T ss_pred ceeEeeecccceeeeeecc------------------cCcccceeecccCCCCceEEEEecCceEEEEeccCCC-----C
Confidence 9999999998775544321 1234579999999999999999999999999997532 1
Q ss_pred CCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCccccccc
Q 000268 432 PNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 511 (1757)
Q Consensus 432 ~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~ 511 (1757)
++.++ .+.........+.|.|.. +.+|++.+..|-+-+||.+.....
T Consensus 184 ~~~~~-~~AN~~~~F~t~~F~P~~-------------------------P~Li~~~~~~~G~~~~D~R~~~~~------- 230 (609)
T KOG4227|consen 184 PISLV-LPANSGKNFYTAEFHPET-------------------------PALILVNSETGGPNVFDRRMQARP------- 230 (609)
T ss_pred CCcee-eecCCCccceeeeecCCC-------------------------ceeEEeccccCCCCceeeccccch-------
Confidence 22222 223334455667777754 358899999999999999853210
Q ss_pred ccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceE-EEEeCCC-------C
Q 000268 512 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLV-HSLTGHT-------E 583 (1757)
Q Consensus 512 ~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll-~~L~gH~-------~ 583 (1757)
.+. ......+......-..+.|+|.|..|++.-....-.+||+.+..+. ..+. |. .
T Consensus 231 -~~~--------------~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~ 294 (609)
T KOG4227|consen 231 -VYQ--------------RSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIK 294 (609)
T ss_pred -HHh--------------hhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc-CCCCcceeee
Confidence 000 0000011111223356789999999988776666778888765443 2332 22 2
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEeCCC----------C-------------ceEEEEeecCcceEEEEEcCCCCEE
Q 000268 584 STYVLDVHPFNPRIAMSAGYDGKTIVWDIWE----------G-------------IPIRIYEISRFRLVDGKFSPDGASI 640 (1757)
Q Consensus 584 ~VtsLafSPdd~~lLaSgs~DG~IrIWDl~t----------g-------------~~l~~l~~~~~~VtslafSPDGk~L 640 (1757)
.+.+++|. +.+-+++|+.+-.|.||.+.. | ..+.++.+|..-+..+.|+|-..+|
T Consensus 295 T~KS~~F~--~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l 372 (609)
T KOG4227|consen 295 TIKSMTFI--DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLL 372 (609)
T ss_pred eeeeeeee--cceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceE
Confidence 46667775 455688999999999998743 1 2345677888888899999999999
Q ss_pred EEEeCCCeEEEEEC
Q 000268 641 ILSDDVGQLYILNT 654 (1757)
Q Consensus 641 Asgs~DG~I~IWdl 654 (1757)
++++-...++||.-
T Consensus 373 ~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 373 VSSGVENSFKLWSD 386 (609)
T ss_pred eccchhhheecccc
Confidence 99999999999974
|
|
| >cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.1e-16 Score=154.74 Aligned_cols=84 Identities=15% Similarity=0.249 Sum_probs=78.9
Q ss_pred cccccccccccccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHH
Q 000268 1664 DQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRT 1743 (1757)
Q Consensus 1664 ~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~~~s~i~~~a~~l~~~~~~~ 1743 (1757)
-+..|..++.....|+||.+|+.||||+||++||+++.|.++++|..|+++||.||.+||+++|.|+.+|..|+++|..+
T Consensus 24 ~s~~F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~f~~~ 103 (107)
T cd05516 24 LAEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFKSA 103 (107)
T ss_pred eeHHhhcCCCcccCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 35677778888899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhCC
Q 000268 1744 LSSL 1747 (1757)
Q Consensus 1744 l~~~ 1747 (1757)
++++
T Consensus 104 ~~~~ 107 (107)
T cd05516 104 RQKI 107 (107)
T ss_pred HhcC
Confidence 8763
|
SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-15 Score=154.71 Aligned_cols=103 Identities=15% Similarity=0.225 Sum_probs=92.8
Q ss_pred CChhhHHHHHHHHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhh---cccCCHHHHHHHHHHHH
Q 000268 1640 IDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLEN---NYYRGLEAVKHDIAVML 1716 (1757)
Q Consensus 1640 ~~~~~r~kLls~l~kle~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen---~~Yr~~~~~~~Dv~~i~ 1716 (1757)
+.++.+.++..++.++.. +..++.|..+++. ..|+|+.+|++||||+||++||++ ++|.++++|..|+++|+
T Consensus 1 ~~~~~~~~c~~il~~l~~----~~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~ 75 (109)
T cd05502 1 LSPIDQRKCERLLLELYC----HELSLPFHEPVSP-SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMF 75 (109)
T ss_pred CCHHHHHHHHHHHHHHHh----CCCChhhcCCCCC-CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Confidence 356788888888888743 3667788888877 899999999999999999999999 59999999999999999
Q ss_pred HhhhhhcCCCcHHHHHHHHHHHHHHHHHhCC
Q 000268 1717 SNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1747 (1757)
Q Consensus 1717 ~Na~~fn~~~s~i~~~a~~l~~~~~~~l~~~ 1747 (1757)
+||..||++++.++++|+.|+++|.++++.+
T Consensus 76 ~Na~~yN~~~s~i~~~a~~l~~~f~~~~~~~ 106 (109)
T cd05502 76 KNCYKFNEEDSEVAQAGKELELFFEEQLKEI 106 (109)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998874
|
Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.3e-16 Score=157.60 Aligned_cols=96 Identities=16% Similarity=0.324 Sum_probs=86.7
Q ss_pred HHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHH
Q 000268 1654 KLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKI 1733 (1757)
Q Consensus 1654 kle~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~~~s~i~~~a 1733 (1757)
++......++.+..|..+++....|+||++|+.||||+||++||++++|+++++|+.||++|++||..||++++.++++|
T Consensus 7 ~ii~~l~~~~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~i~~~A 86 (112)
T cd05511 7 EIVNELKNLPDSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSVYTKKA 86 (112)
T ss_pred HHHHHHHhCCCchhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 33333444567788888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCC
Q 000268 1734 KRLSDLVTRTLSSLKA 1749 (1757)
Q Consensus 1734 ~~l~~~~~~~l~~~~~ 1749 (1757)
+.|.++|.+.|..++.
T Consensus 87 ~~l~~~~~~~~~~~~~ 102 (112)
T cd05511 87 KEMLELAEELLAEREE 102 (112)
T ss_pred HHHHHHHHHHHHHhHH
Confidence 9999999999988754
|
Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.5e-16 Score=152.44 Aligned_cols=93 Identities=13% Similarity=0.314 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhcCCC
Q 000268 1647 KLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRN 1726 (1757)
Q Consensus 1647 kLls~l~kle~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~~~ 1726 (1757)
++...+..+.. +.....|..+++....|+|+++|+.||||+||++||+++.|+++++|..|+++|++||..||+++
T Consensus 4 ~c~~il~~l~~----~~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05503 4 LCETILDEMEA----HEDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDD 79 (97)
T ss_pred HHHHHHHHHHc----CCCchhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 44445555533 45667788888878899999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHH
Q 000268 1727 TDLSTKIKRLSDLVTRT 1743 (1757)
Q Consensus 1727 s~i~~~a~~l~~~~~~~ 1743 (1757)
+.++++|+.|+++|.++
T Consensus 80 s~i~~~a~~l~~~f~~~ 96 (97)
T cd05503 80 SEVGRAGHNMRKFFEKR 96 (97)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999864
|
Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05500 Bromo_BDF1_2_I Bromodomain | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-15 Score=152.95 Aligned_cols=101 Identities=21% Similarity=0.339 Sum_probs=90.2
Q ss_pred CChhhHHHHHHHHHHHHhhhcccccccccccccccc--cCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHH
Q 000268 1640 IDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVS--QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLS 1717 (1757)
Q Consensus 1640 ~~~~~r~kLls~l~kle~~~~~~~~~~~~~~~~~~~--~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~ 1717 (1757)
+.++.+..++.++.+|.+ ++.+..|..+++.. ..|+|+++|++||||+||++||+++.|.++++|..||++|++
T Consensus 1 ~t~~~~~~~~~ii~~l~~----~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 76 (103)
T cd05500 1 MTKHQHKFLLSSIRSLKR----LKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVD 76 (103)
T ss_pred CCHHHHHHHHHHHHHHHc----CCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 356788888888888843 56677788777644 789999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHHHH
Q 000268 1718 NAESYFGRNTDLSTKIKRLSDLVTRTL 1744 (1757)
Q Consensus 1718 Na~~fn~~~s~i~~~a~~l~~~~~~~l 1744 (1757)
||..||++++.++.+|+.|++.|.+.|
T Consensus 77 Na~~yN~~~s~~~~~A~~l~~~fe~~~ 103 (103)
T cd05500 77 NCLTFNGPEHPVSQMGKRLQAAFEKHL 103 (103)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999998864
|
BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.8e-14 Score=175.95 Aligned_cols=285 Identities=16% Similarity=0.204 Sum_probs=199.4
Q ss_pred CceEEEEecCCC-eEEEEEecCCCCeEEEEEcC-CCCEEEEEeCCceEEEEECCCCCc--eEE----ecCCCCceEEEEe
Q 000268 264 DRLVKIWSMETA-YCLASCRGHEGDITDLAVSS-NNALVASASNDCIIRVWRLPDGLP--ISV----LRGHTAAVTAIAF 335 (1757)
Q Consensus 264 DGtIkIWDl~tg-~~l~tL~gH~~~VtsLafSP-Dg~lLASgS~DGtIrVWDl~tg~~--l~~----l~gH~~~VtsLaf 335 (1757)
++.+.||++... ..-..+. -...|+|++|+| +..+||.|+.+|.|.+||+..+.. ... ...|..+|+.+.|
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred CceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 358999999875 3333443 567899999999 456888899999999999987754 222 2468899999999
Q ss_pred cCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECC-CCCEEEEeeCCc
Q 000268 336 SPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NGTVFVTGSSDT 414 (1757)
Q Consensus 336 SPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSp-dG~~LasGs~DG 414 (1757)
..+..+ .-|++++.||.|+.|+++.-........ ................++++.|.+ +-..|++|+..|
T Consensus 300 ~~~~~~-~~f~s~ssDG~i~~W~~~~l~~P~e~~~--------~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G 370 (555)
T KOG1587|consen 300 LQNEHN-TEFFSLSSDGSICSWDTDMLSLPVEGLL--------LESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEG 370 (555)
T ss_pred eccCCC-CceEEEecCCcEeeeeccccccchhhcc--------cccccccccccccccceeeEeeccCCCceEEEEcCCc
Confidence 887653 4699999999999998775443221111 000010111223456789999988 557899999999
Q ss_pred eEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEE
Q 000268 415 LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAI 494 (1757)
Q Consensus 415 ~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~ 494 (1757)
.|..-.-...... .....+....+..|.+.|.++.++|-+ +..+++++ |.+++
T Consensus 371 ~v~~~~r~g~~~~-~~~~~~~~~~~~~h~g~v~~v~~nPF~-------------------------~k~fls~g-DW~vr 423 (555)
T KOG1587|consen 371 KVYKGCRKGYTPA-PEVSYKGHSTFITHIGPVYAVSRNPFY-------------------------PKNFLSVG-DWTVR 423 (555)
T ss_pred EEEEEeccCCccc-ccccccccccccccCcceEeeecCCCc-------------------------cceeeeec-cceeE
Confidence 8876333221111 101123345677889999999999854 35566666 99999
Q ss_pred EEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCC-EEEEEecCCeEEEEECCC--
Q 000268 495 IWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR-FVLAAIMDCRICVWNAAD-- 571 (1757)
Q Consensus 495 IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~-~LaSGs~DG~I~IWDl~t-- 571 (1757)
||.... ...++..+..+...|++++|||--. .++++..||.|.|||+..
T Consensus 424 iWs~~~----------------------------~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~ 475 (555)
T KOG1587|consen 424 IWSEDV----------------------------IASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD 475 (555)
T ss_pred eccccC----------------------------CCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccc
Confidence 997652 1223334444556699999999764 567788899999999964
Q ss_pred CceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 000268 572 GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614 (1757)
Q Consensus 572 gkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~t 614 (1757)
-.++.+..-+....+.+.|++ .+++|++|...|.|.+|++..
T Consensus 476 ~~Pv~s~~~~~~~l~~~~~s~-~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 476 EEPVLSQKVCSPALTRVRWSP-NGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cCCcccccccccccceeecCC-CCcEEEEecCCCcEEEEEcCc
Confidence 345555555556667777877 789999999999999999954
|
|
| >cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-15 Score=152.19 Aligned_cols=82 Identities=23% Similarity=0.359 Sum_probs=76.8
Q ss_pred cccccccccccccccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHH
Q 000268 1662 VQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVT 1741 (1757)
Q Consensus 1662 ~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~~~s~i~~~a~~l~~~~~ 1741 (1757)
..-...|..++.....|+||++|++||||+||++||+++.|+++++|+.|+++||.||.+||++++.++.+|..|+++|.
T Consensus 21 ~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~L~~~f~ 100 (103)
T cd05520 21 QLLAEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNVPNSRIYKDAEKLQKLMQ 100 (103)
T ss_pred CCccHhhhcCCCcccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 34556788888888999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HH
Q 000268 1742 RT 1743 (1757)
Q Consensus 1742 ~~ 1743 (1757)
++
T Consensus 101 ~~ 102 (103)
T cd05520 101 AK 102 (103)
T ss_pred Hh
Confidence 75
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-15 Score=150.92 Aligned_cols=89 Identities=19% Similarity=0.235 Sum_probs=77.6
Q ss_pred HHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhcCCCcHHH
Q 000268 1651 AFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLS 1730 (1757)
Q Consensus 1651 ~l~kle~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~~~s~i~ 1730 (1757)
.+..+.+..........|..+++....|+|+++|++||||+||++||+++.|.++++|..||++||.||.+||+|++.++
T Consensus 5 ~l~~il~~l~~~~~~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~ 84 (98)
T cd05513 5 ALEQLIRQLQRKDPHGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPDTIYY 84 (98)
T ss_pred HHHHHHHHHHcCCccccccCcCCccccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 33344444444566777888888788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 000268 1731 TKIKRLSDL 1739 (1757)
Q Consensus 1731 ~~a~~l~~~ 1739 (1757)
++|..|...
T Consensus 85 ~~A~~L~~~ 93 (98)
T cd05513 85 KAAKKLLHS 93 (98)
T ss_pred HHHHHHHHh
Confidence 999999764
|
The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-15 Score=151.88 Aligned_cols=97 Identities=19% Similarity=0.333 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhcCC
Q 000268 1646 NKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGR 1725 (1757)
Q Consensus 1646 ~kLls~l~kle~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~~ 1725 (1757)
++++..+...... .+..-+..|..+.+....|+||++|++||||+||++||++++|.++++|..|+++||.||.+||++
T Consensus 6 ~~l~~~i~~~~d~-~gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~ 84 (103)
T cd05517 6 EQLLEAVMTATDP-SGRLISELFQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKTFNEP 84 (103)
T ss_pred HHHHHHHHHhhCc-CCCChhHHHhcCCCCCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4455554444322 344455677888888899999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHH
Q 000268 1726 NTDLSTKIKRLSDLVTRT 1743 (1757)
Q Consensus 1726 ~s~i~~~a~~l~~~~~~~ 1743 (1757)
++.|+++|..|+++|..+
T Consensus 85 ~s~i~~~A~~l~~~f~~~ 102 (103)
T cd05517 85 GSQVYKDANAIKKIFTAK 102 (103)
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 999999999999999764
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-15 Score=148.69 Aligned_cols=71 Identities=14% Similarity=0.330 Sum_probs=68.5
Q ss_pred ccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHhC
Q 000268 1675 SQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSS 1746 (1757)
Q Consensus 1675 ~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~~~s~i~~~a~~l~~~~~~~l~~ 1746 (1757)
...||||++|++||||+||++||+++.|.++++|+.||+|||+||++||+++ .+.++|..|+++|.+++++
T Consensus 28 ~~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~~-~~~~~a~~L~~~Fek~~~~ 98 (102)
T cd05501 28 YYIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKDD-DFGQVGITLEKKFEKNFKE 98 (102)
T ss_pred CCCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHH
Confidence 4779999999999999999999999999999999999999999999999999 9999999999999998865
|
The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.7e-14 Score=161.79 Aligned_cols=227 Identities=22% Similarity=0.369 Sum_probs=168.9
Q ss_pred EEecCCCCeEEEEEcC-CCCEEEEEeCCceEEEEECCCC-------CceEEecCCCCceEEEEecCCCCceEEEEEEeCC
Q 000268 280 SCRGHEGDITDLAVSS-NNALVASASNDCIIRVWRLPDG-------LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD 351 (1757)
Q Consensus 280 tL~gH~~~VtsLafSP-Dg~lLASgS~DGtIrVWDl~tg-------~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~D 351 (1757)
.+.||.++|..++|+| +...||+||.|.+|.||.+..+ .++..|.||...|.-|+|+|... ..|++++.|
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~--NVLlsag~D 153 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP--NVLLSAGSD 153 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch--hhHhhccCC
Confidence 3569999999999999 5568999999999999998654 56778899999999999999865 389999999
Q ss_pred CcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCC
Q 000268 352 GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQ 431 (1757)
Q Consensus 352 GtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~ 431 (1757)
.+|.+|++.+|..+..+ .|...|++++|+.||.+|++.+.|..|||||.+++.
T Consensus 154 n~v~iWnv~tgeali~l---------------------~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~------ 206 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITL---------------------DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT------ 206 (472)
T ss_pred ceEEEEeccCCceeeec---------------------CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCc------
Confidence 99999999999855443 278889999999999999999999999999998743
Q ss_pred CCcceeeecCCCCC-ceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEE----cCCCeEEEEeCCCCCCCcc
Q 000268 432 PNHEIDVLSGHEND-VNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC----SRDGSAIIWIPRSRRSHPK 506 (1757)
Q Consensus 432 ~~~~i~~l~gH~~~-V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSg----S~DGtI~IWDl~t~k~~~~ 506 (1757)
.+....+|.+. -.-+.|..++ . +++. ..+..+.+||......
T Consensus 207 ---~v~e~~~heG~k~~Raifl~~g--------------------------~-i~tTGfsr~seRq~aLwdp~nl~e--- 253 (472)
T KOG0303|consen 207 ---VVSEGVAHEGAKPARAIFLASG--------------------------K-IFTTGFSRMSERQIALWDPNNLEE--- 253 (472)
T ss_pred ---EeeecccccCCCcceeEEeccC--------------------------c-eeeeccccccccceeccCcccccC---
Confidence 44455566653 2334455544 2 4433 3477899998875220
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEE-EecCCeEEEEECCCCce-EEEEeC--CC
Q 000268 507 AARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA-AIMDCRICVWNAADGSL-VHSLTG--HT 582 (1757)
Q Consensus 507 ~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaS-Gs~DG~I~IWDl~tgkl-l~~L~g--H~ 582 (1757)
...........+|..--|.+|...|.. |-.|+.|+.|.+.+-.+ ++-|.. ..
T Consensus 254 ------------------------P~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~ 309 (472)
T KOG0303|consen 254 ------------------------PIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSK 309 (472)
T ss_pred ------------------------cceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccC
Confidence 111223445667888889999988765 55799999999976553 332221 22
Q ss_pred CCeEEEEEec
Q 000268 583 ESTYVLDVHP 592 (1757)
Q Consensus 583 ~~VtsLafSP 592 (1757)
.+-..+.|-|
T Consensus 310 epQRG~g~mP 319 (472)
T KOG0303|consen 310 EPQRGMGFMP 319 (472)
T ss_pred Cccccccccc
Confidence 3345566666
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.7e-15 Score=172.69 Aligned_cols=182 Identities=24% Similarity=0.366 Sum_probs=144.2
Q ss_pred ccccceeEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEe-cCCCCeEEEEEcC--CCCEEEEEeC
Q 000268 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDLAVSS--NNALVASASN 305 (1757)
Q Consensus 229 ~~~~~k~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~-gH~~~VtsLafSP--Dg~lLASgS~ 305 (1757)
++..+.+-+.|.||++.|+|+.|+.+|.+||+||+|-.|.|||.-..++++.+. ||.+.|.++.|-| ++.+|++|+.
T Consensus 36 ~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAg 115 (758)
T KOG1310|consen 36 WLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAG 115 (758)
T ss_pred HHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccC
Confidence 344566677899999999999999999999999999999999998888888775 8999999999998 5668999999
Q ss_pred CceEEEEECCC----------CCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCc
Q 000268 306 DCIIRVWRLPD----------GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSD 375 (1757)
Q Consensus 306 DGtIrVWDl~t----------g~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~ 375 (1757)
|..|+|+|+.. ...++.+..|...|..|+-.|++. +.+.+++.||+|+-+|++.......-.
T Consensus 116 Dk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P--htfwsasEDGtirQyDiREph~c~p~~------ 187 (758)
T KOG1310|consen 116 DKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP--HTFWSASEDGTIRQYDIREPHVCNPDE------ 187 (758)
T ss_pred cceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCC--ceEEEecCCcceeeecccCCccCCccc------
Confidence 99999999974 245566788999999999999875 489999999999999998643211100
Q ss_pred cccCCCCCCCCCCCCCCcceEEEEECCC-CCEEEEeeCCceEEEecCC
Q 000268 376 AVAGRNMAPSSSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNAC 422 (1757)
Q Consensus 376 ~~~g~~~~~~~~~~~~~~~V~slafSpd-G~~LasGs~DG~IrVWDl~ 422 (1757)
..........+.--...|+..+|. ..+||+|+.|-..++||.+
T Consensus 188 ----~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 188 ----DCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred ----cccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 000000011112244679999995 5789999999999999974
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-13 Score=176.15 Aligned_cols=323 Identities=16% Similarity=0.195 Sum_probs=215.6
Q ss_pred ccccceeEEEEccCCCCEEEEEECCCC-CEEEEEcCCceEEEEecCC-------CeEEEEEecCCCCeEEEEEcCCCCEE
Q 000268 229 MVQKMQNIKRVRGHRNAVYCAIFDRSG-RYVITGSDDRLVKIWSMET-------AYCLASCRGHEGDITDLAVSSNNALV 300 (1757)
Q Consensus 229 ~~~~~k~l~tL~GH~~~V~~VaFSPDG-~~LATGS~DGtIkIWDl~t-------g~~l~tL~gH~~~VtsLafSPDg~lL 300 (1757)
+-.++..+.+|..|...|..++.++.. .+++|||.||+|+||+... .+...++..-...+.++.+.+.+..+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 346788999999999999999988755 9999999999999999853 22333444457889999999999999
Q ss_pred EEEeCCceEEEEECCC--CC-----ceEEe--cCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecC
Q 000268 301 ASASNDCIIRVWRLPD--GL-----PISVL--RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIP 371 (1757)
Q Consensus 301 ASgS~DGtIrVWDl~t--g~-----~l~~l--~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~ 371 (1757)
|+++.||.|++.++.- .. +.+.. ......|..-+|.....+ ..|+.+..-+.|..||++...-..++..
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S-~~lvy~T~~~~iv~~D~r~~~~~w~lk~- 1191 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQS-HVLVYATDLSRIVSWDTRMRHDAWRLKN- 1191 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccc-eeEEEEEeccceEEecchhhhhHHhhhc-
Confidence 9999999999999865 21 11111 122233444556555444 4788888889999999987765554432
Q ss_pred CCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEE
Q 000268 372 RPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQF 451 (1757)
Q Consensus 372 ~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLaf 451 (1757)
....+.|++++.+|.+.++++|+..|.+.+||++-... ....-..+..++..+..
T Consensus 1192 -----------------~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~--------i~sw~~P~~~~i~~v~~ 1246 (1431)
T KOG1240|consen 1192 -----------------QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVP--------ILSWEHPARAPIRHVWL 1246 (1431)
T ss_pred -----------------CccccceeEEEecCCceEEEEecCCceEEEEEeecCce--------eecccCcccCCcceEEe
Confidence 23456799999999999999999999999999974321 11122234466777766
Q ss_pred ccCccccccccccCCCCCCCCcccccccCCCcEE-EEc-CCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCC
Q 000268 452 SGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIV-TCS-RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPR 529 (1757)
Q Consensus 452 Spdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~Lv-SgS-~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~ 529 (1757)
.|-.. .....+ +++ ..+.|.+|++.++.+ ....|.. ...+.+....+.
T Consensus 1247 ~~~~~-----------------------~~S~~vs~~~~~~nevs~wn~~~g~~--~~vl~~s-----~~~p~ls~~~Ps 1296 (1431)
T KOG1240|consen 1247 CPTYP-----------------------QESVSVSAGSSSNNEVSTWNMETGLR--QTVLWAS-----DGAPILSYALPS 1296 (1431)
T ss_pred eccCC-----------------------CCceEEEecccCCCceeeeecccCcc--eEEEEcC-----CCCcchhhhccc
Confidence 65320 012333 334 578899999998643 2223322 011111111111
Q ss_pred CCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceE----------------------------------
Q 000268 530 GGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLV---------------------------------- 575 (1757)
Q Consensus 530 ~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll---------------------------------- 575 (1757)
. .....+.-.....++.--+.++++|+.|..|+.||.......
T Consensus 1297 ~---~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~ 1373 (1431)
T KOG1240|consen 1297 N---DARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFII 1373 (1431)
T ss_pred c---cCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhh
Confidence 1 000122223333445556678999999999999997542100
Q ss_pred --------------EEE--------eCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000268 576 --------------HSL--------TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1757)
Q Consensus 576 --------------~~L--------~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWD 611 (1757)
..+ ..|.+.|++|++......+|++++.||.|+||.
T Consensus 1374 ~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1374 YQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 000 247778999998876677999999999999993
|
|
| >cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.8e-15 Score=150.75 Aligned_cols=98 Identities=18% Similarity=0.313 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhcCCC
Q 000268 1647 KLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRN 1726 (1757)
Q Consensus 1647 kLls~l~kle~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~~~ 1726 (1757)
.++..+...... ...+-+..|..++.....|+||++|++||||+||++||+++.|.++++|..|+++||.||.+||+++
T Consensus 7 ~~~~~i~~~~d~-~~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~~yN~~~ 85 (105)
T cd05515 7 ELYNAVKNYTDG-RGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKYNEPD 85 (105)
T ss_pred HHHHHHHHhhCc-CCCcccHHhccCCCcccCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 344444444221 2445567788888888999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHh
Q 000268 1727 TDLSTKIKRLSDLVTRTLS 1745 (1757)
Q Consensus 1727 s~i~~~a~~l~~~~~~~l~ 1745 (1757)
|.++++|..|+++|.++.+
T Consensus 86 s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 86 SQIYKDALTLQKVLLETKR 104 (105)
T ss_pred CHHHHHHHHHHHHHHHHHc
Confidence 9999999999999998754
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.2e-15 Score=151.64 Aligned_cols=102 Identities=18% Similarity=0.238 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhcC
Q 000268 1645 RNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFG 1724 (1757)
Q Consensus 1645 r~kLls~l~kle~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~ 1724 (1757)
|-.|..++.++. .+...+.|..+++....|+||++|++||||+||++||++++|.++++|..||++|++||..||+
T Consensus 5 r~~L~~il~~l~----~~~~~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~ 80 (112)
T cd05528 5 RLFLRDVLKRLA----SDKRFNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNP 80 (112)
T ss_pred HHHHHHHHHHHH----hCCCchhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCC
Confidence 444555555553 3566788999999889999999999999999999999999999999999999999999999999
Q ss_pred CC----cHHHHHHHHHHHHHHHHHhCCCCC
Q 000268 1725 RN----TDLSTKIKRLSDLVTRTLSSLKAP 1750 (1757)
Q Consensus 1725 ~~----s~i~~~a~~l~~~~~~~l~~~~~~ 1750 (1757)
++ +.|+.+|..|++.|.+.+...-.+
T Consensus 81 ~~s~~~s~i~~~A~~L~~~~~~~~~~~~~~ 110 (112)
T cd05528 81 DRDPADKLIRSRACELRDEVHAMIEAELDP 110 (112)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHhcCCC
Confidence 95 699999999999999999876544
|
Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver |
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-13 Score=173.20 Aligned_cols=300 Identities=15% Similarity=0.164 Sum_probs=203.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCC---CCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCC
Q 000268 286 GDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGH---TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 362 (1757)
Q Consensus 286 ~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH---~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg 362 (1757)
..-..+.|+|-...|+++...-.|+|||.+.++.+..|..+ ...|+.+.+...... .+|++|+.||.|+||+--..
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~-aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDD-ALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccch-hheeeeccCceEEEeccccc
Confidence 35567788888888999887789999999999988877644 357888988765432 38999999999999975432
Q ss_pred C-ccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecC
Q 000268 363 Q-FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG 441 (1757)
Q Consensus 363 ~-~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~g 441 (1757)
. -...+.. +............... .-+.|.....+|+++|.-..|+|||+.+... ......+
T Consensus 1144 ~~~~~eLVT--------aw~~Ls~~~~~~r~~~-~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~--------~~diP~~ 1206 (1387)
T KOG1517|consen 1144 KWKKPELVT--------AWSSLSDQLPGARGTG-LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQV--------VADIPYG 1206 (1387)
T ss_pred ccCCceeEE--------eeccccccCccCCCCC-eeeehhhhCCeEEecCCeeEEEEEeccccee--------EeecccC
Confidence 2 1111110 0000000011111111 4567877666666666688999999965221 1111122
Q ss_pred CCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCC
Q 000268 442 HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPP 521 (1757)
Q Consensus 442 H~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~ 521 (1757)
....|+++.-.-. .++.++.|..||.|++||.+...
T Consensus 1207 s~t~vTaLS~~~~-------------------------~gn~i~AGfaDGsvRvyD~R~a~------------------- 1242 (1387)
T KOG1517|consen 1207 SSTLVTALSADLV-------------------------HGNIIAAGFADGSVRVYDRRMAP------------------- 1242 (1387)
T ss_pred CCccceeeccccc-------------------------CCceEEEeecCCceEEeecccCC-------------------
Confidence 3334444433211 14799999999999999988522
Q ss_pred CCCCCCCCCCCceeecCCCCC--eeEEEEcCCCCE-EEEEecCCeEEEEECCCCceEE--EEeCCC--C-CeEEEEEecC
Q 000268 522 PMPPQPPRGGPRQRILPTPRG--VNMIVWSLDNRF-VLAAIMDCRICVWNAADGSLVH--SLTGHT--E-STYVLDVHPF 593 (1757)
Q Consensus 522 ~~~~~~~~~~~~~~l~~h~~~--VtsVafSPDG~~-LaSGs~DG~I~IWDl~tgkll~--~L~gH~--~-~VtsLafSPd 593 (1757)
....+.....|... |..+.+-+.|-- |++|+.||.|++||++...... .+..|. + ..+++..|+
T Consensus 1243 -------~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~- 1314 (1387)
T KOG1517|consen 1243 -------PDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHE- 1314 (1387)
T ss_pred -------ccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeecc-
Confidence 11233344455555 888888886655 9999999999999998742222 233333 3 589999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceEEEEeec-------CcceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 000268 594 NPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS-------RFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 657 (1757)
Q Consensus 594 d~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~-------~~~VtslafSPDGk~LAsgs~DG~I~IWdl~tG 657 (1757)
...++|+|+. +.|+||++ .|+.+..+... .+.+.+++|+|-.-+||+|..|..|.||....+
T Consensus 1315 hapiiAsGs~-q~ikIy~~-~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1315 HAPIIASGSA-QLIKIYSL-SGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred CCCeeeecCc-ceEEEEec-ChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 7789999988 99999999 66666555422 246789999999999999999999999987654
|
|
| >cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.6e-15 Score=148.88 Aligned_cols=87 Identities=18% Similarity=0.314 Sum_probs=77.9
Q ss_pred HHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhcCCCcHHHHH
Q 000268 1653 AKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTK 1732 (1757)
Q Consensus 1653 ~kle~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~~~s~i~~~ 1732 (1757)
..+......+...+.|..+++....|+|+++|+.||||+||++||+++.|+++++|..||++||.||..||++++.+++.
T Consensus 7 ~~il~~l~~~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~~~~~ 86 (98)
T cd05512 7 RKTLDQLQEKDTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAKDTIFYRA 86 (98)
T ss_pred HHHHHHHHhCCCchhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 33334444467778888888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 000268 1733 IKRLSDL 1739 (1757)
Q Consensus 1733 a~~l~~~ 1739 (1757)
|..|++.
T Consensus 87 A~~l~~~ 93 (98)
T cd05512 87 AVRLRDQ 93 (98)
T ss_pred HHHHHHh
Confidence 9999875
|
BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-15 Score=193.47 Aligned_cols=102 Identities=17% Similarity=0.313 Sum_probs=88.5
Q ss_pred HHHHHHHHHhhhcccccccccccccccc--cCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhcCC
Q 000268 1648 LLSAFAKLEQSANRVQDQYGVQKLKQVS--QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGR 1725 (1757)
Q Consensus 1648 Lls~l~kle~~~~~~~~~~~~~~~~~~~--~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~~ 1725 (1757)
++..+..++.....+...|.|..++++. .-||||+||++||||+|||+||++++|+++.+|..||||||.||++||.+
T Consensus 223 ~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~Ncm~YNp~ 302 (640)
T KOG1474|consen 223 LLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDNCMTYNPE 302 (640)
T ss_pred HHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHHHHhcCCC
Confidence 3344444444444456669999999865 45999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCC
Q 000268 1726 NTDLSTKIKRLSDLVTRTLSSLKA 1749 (1757)
Q Consensus 1726 ~s~i~~~a~~l~~~~~~~l~~~~~ 1749 (1757)
+++|+.||+.|+++|......++.
T Consensus 303 g~dV~~Ma~~L~~~Fe~rw~~~~~ 326 (640)
T KOG1474|consen 303 GSDVYAMAKKLQEVFEERWASMPL 326 (640)
T ss_pred CCHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999988665
|
|
| >cd05499 Bromo_BDF1_2_II Bromodomain | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.9e-15 Score=149.33 Aligned_cols=98 Identities=13% Similarity=0.227 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHhhhcccccccccccccccc--cCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhc
Q 000268 1646 NKLLSAFAKLEQSANRVQDQYGVQKLKQVS--QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYF 1723 (1757)
Q Consensus 1646 ~kLls~l~kle~~~~~~~~~~~~~~~~~~~--~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn 1723 (1757)
..+..++.+|.... ....++.|..+++.. ..|+||++|++||||+||++||+++.|+++++|..|+++||.||..||
T Consensus 3 ~~c~~Il~~l~~~~-~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn 81 (102)
T cd05499 3 KFCEEVLKELMKPK-HSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFN 81 (102)
T ss_pred HHHHHHHHHHHccc-CCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 34555555553321 234567888887766 889999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHH
Q 000268 1724 GRNTDLSTKIKRLSDLVTRTL 1744 (1757)
Q Consensus 1724 ~~~s~i~~~a~~l~~~~~~~l 1744 (1757)
++++.++.+|+.|+++|.+++
T Consensus 82 ~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 82 PEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999998763
|
BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-13 Score=154.56 Aligned_cols=363 Identities=15% Similarity=0.141 Sum_probs=228.5
Q ss_pred EEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE-eCCceEEEEECCCCCceEEecCCC
Q 000268 249 AIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASA-SNDCIIRVWRLPDGLPISVLRGHT 327 (1757)
Q Consensus 249 VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASg-S~DGtIrVWDl~tg~~l~~l~gH~ 327 (1757)
+.|||+|++||+.+.- .+.|-|..+-+.++.+.. -..|.-+.|..|.-+++++ ..++.|.+|++....-...+....
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ 91 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ 91 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence 5699999999999865 788889887765544332 4568888999888877665 557899999999888888888888
Q ss_pred CceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEE
Q 000268 328 AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVF 407 (1757)
Q Consensus 328 ~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~L 407 (1757)
..+.+++|||+|+ +.|.+...+-.|.+|.+.+.+..... .....+..++|+|||++.
T Consensus 92 agls~~~WSPdgr--hiL~tseF~lriTVWSL~t~~~~~~~---------------------~pK~~~kg~~f~~dg~f~ 148 (447)
T KOG4497|consen 92 AGLSSISWSPDGR--HILLTSEFDLRITVWSLNTQKGYLLP---------------------HPKTNVKGYAFHPDGQFC 148 (447)
T ss_pred CcceeeeECCCcc--eEeeeecceeEEEEEEeccceeEEec---------------------ccccCceeEEECCCCcee
Confidence 9999999999997 47888889999999999876543221 112335678888888887
Q ss_pred EEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCC--------CCCccccccc
Q 000268 408 VTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED--------STPKFKNSWF 479 (1757)
Q Consensus 408 asGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~--------~~~~~~~~~~ 479 (1757)
+..+.-...-.+.+. .-+....+..+.-.+-..+.+.|+|+|.- +..++..-+. ...++..-..
T Consensus 149 ai~sRrDCkdyv~i~------~c~~W~ll~~f~~dT~DltgieWsPdg~~--laVwd~~Leykv~aYe~~lG~k~v~wsP 220 (447)
T KOG4497|consen 149 AILSRRDCKDYVQIS------SCKAWILLKEFKLDTIDLTGIEWSPDGNW--LAVWDNVLEYKVYAYERGLGLKFVEWSP 220 (447)
T ss_pred eeeecccHHHHHHHH------hhHHHHHHHhcCCCcccccCceECCCCcE--EEEecchhhheeeeeeeccceeEEEecc
Confidence 776543211111110 00112233344444556667777777621 1111111111 1111111123
Q ss_pred CCCcEEEEcCCCeEEEEeCCCCCCCcccccc------------cc---c-----ccccCCCCCCCCCC------------
Q 000268 480 CHDNIVTCSRDGSAIIWIPRSRRSHPKAARW------------TQ---A-----YHLKVPPPPMPPQP------------ 527 (1757)
Q Consensus 480 ~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w------------~~---~-----~~l~~~~~~~~~~~------------ 527 (1757)
++..|++|+.|+.++|.+--+-+..++.... .. . ..+..++.......
T Consensus 221 ~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~ 300 (447)
T KOG4497|consen 221 CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQM 300 (447)
T ss_pred ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhh
Confidence 4689999999999998544332221111000 00 0 00111111110000
Q ss_pred -----CCCCCceeecCCCCCeeEEEEcCCCCEEEEEec--CCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEE
Q 000268 528 -----PRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM--DCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMS 600 (1757)
Q Consensus 528 -----~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~--DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaS 600 (1757)
....+.........++..++||+|..++++-.. -+.+.+||++.-++...+. ...+|....|+|...+++++
T Consensus 301 ~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vc 379 (447)
T KOG4497|consen 301 TPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVC 379 (447)
T ss_pred cceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEE
Confidence 000111111222456889999999999998543 4679999998877665554 45679999999966676655
Q ss_pred EeCCCcEEEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCCC
Q 000268 601 AGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVG 647 (1757)
Q Consensus 601 gs~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG 647 (1757)
.| ...+++|...-..++..-. ....|..+.|.-+|..|+..+.|.
T Consensus 380 tg-~srLY~W~psg~~~V~vP~-~GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 380 TG-KSRLYFWAPSGPRVVGVPK-KGFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred cC-CceEEEEcCCCceEEecCC-CCceeeeEEecCCCcEEEEEcCCc
Confidence 44 5569999986555555443 347899999999999999888875
|
|
| >cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.3e-15 Score=148.51 Aligned_cols=79 Identities=15% Similarity=0.236 Sum_probs=73.7
Q ss_pred ccccccccccccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHH
Q 000268 1665 QYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRT 1743 (1757)
Q Consensus 1665 ~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~~~s~i~~~a~~l~~~~~~~ 1743 (1757)
+..|..++.....|+||++|+.||||+||++||+++.|.++++|..|+++||.||..||+++|.|+.+|..|+++|..+
T Consensus 24 ~~~F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 24 CDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHYNEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred cHHHhcCCCcccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhc
Confidence 4456677777889999999999999999999999999999999999999999999999999999999999999999764
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >smart00297 BROMO bromo domain | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.9e-15 Score=149.40 Aligned_cols=103 Identities=21% Similarity=0.374 Sum_probs=92.0
Q ss_pred hHHHHHHHHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhc
Q 000268 1644 NRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYF 1723 (1757)
Q Consensus 1644 ~r~kLls~l~kle~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn 1723 (1757)
...++...+..+......++..+.|..++.....|+|+++|+.||||++|++||+++.|+++++|..|+++|+.||.+||
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n 83 (107)
T smart00297 4 LQKKLQSLLKAVLDKLDSHRLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYN 83 (107)
T ss_pred hHHHHHHHHHHHHHHHHhCccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 34556666666666555567788899988888899999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhC
Q 000268 1724 GRNTDLSTKIKRLSDLVTRTLSS 1746 (1757)
Q Consensus 1724 ~~~s~i~~~a~~l~~~~~~~l~~ 1746 (1757)
++++.++.+|+.|.+.|.+.++.
T Consensus 84 ~~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 84 GPDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999875
|
|
| >cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.4e-15 Score=151.05 Aligned_cols=84 Identities=14% Similarity=0.309 Sum_probs=78.0
Q ss_pred cccccccccccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHh
Q 000268 1666 YGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLS 1745 (1757)
Q Consensus 1666 ~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~~~s~i~~~a~~l~~~~~~~l~ 1745 (1757)
..|..++.....|+||++|++||||+||++||+++.|.++++|..|+++|++||.+||++++.++++|..|+++|.+.++
T Consensus 27 ~~F~~~p~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~ 106 (113)
T cd05524 27 ESFIRVPKRRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKAYYKPDSPEHKDACKLWELFLSARN 106 (113)
T ss_pred HHHhcCCCcccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34556777788999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCC
Q 000268 1746 SLKA 1749 (1757)
Q Consensus 1746 ~~~~ 1749 (1757)
++..
T Consensus 107 ~~~~ 110 (113)
T cd05524 107 EVLS 110 (113)
T ss_pred Hhhc
Confidence 7643
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-14 Score=172.39 Aligned_cols=268 Identities=21% Similarity=0.319 Sum_probs=192.1
Q ss_pred EEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEE
Q 000268 321 SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 400 (1757)
Q Consensus 321 ~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slaf 400 (1757)
.++..|...|+.++|.|... .|++++.||+|.+|++..... .......+...+.+|.++|.|+++
T Consensus 288 ~tl~s~~d~ir~l~~~~sep---~lit~sed~~lk~WnLqk~~~------------s~~~~~epi~tfraH~gPVl~v~v 352 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEP---VLITASEDGTLKLWNLQKAKK------------SAEKDVEPILTFRAHEGPVLCVVV 352 (577)
T ss_pred eeeecchhhhhhhhcCCCCC---eEEEeccccchhhhhhcccCC------------ccccceeeeEEEecccCceEEEEe
Confidence 36677899999999999877 899999999999999943110 012233445567789999999999
Q ss_pred CCCCCEEEEeeCCceEEEecCCCCCC--CCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccc
Q 000268 401 NANGTVFVTGSSDTLARVWNACKPNT--DDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478 (1757)
Q Consensus 401 SpdG~~LasGs~DG~IrVWDl~t~~~--~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~ 478 (1757)
.+++..+++|+.||+|+.|++- .+. .....+......+.||.+.|+.+++++..
T Consensus 353 ~~n~~~~ysgg~Dg~I~~w~~p-~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~----------------------- 408 (577)
T KOG0642|consen 353 PSNGEHCYSGGIDGTIRCWNLP-PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK----------------------- 408 (577)
T ss_pred cCCceEEEeeccCceeeeeccC-CCCCcccccCcchhccceeccccceeeeeecccc-----------------------
Confidence 9999999999999999999875 222 12233445667889999999999999764
Q ss_pred cCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCC-CEEEE
Q 000268 479 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN-RFVLA 557 (1757)
Q Consensus 479 ~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG-~~LaS 557 (1757)
+.|++++.||++++|+....... . + +. ......-+++.+-... ...++
T Consensus 409 ---~~Llscs~DgTvr~w~~~~~~~~-~---f-------------------~~-----~~e~g~Plsvd~~ss~~a~~~~ 457 (577)
T KOG0642|consen 409 ---DRLLSCSSDGTVRLWEPTEESPC-T---F-------------------GE-----PKEHGYPLSVDRTSSRPAHSLA 457 (577)
T ss_pred ---cceeeecCCceEEeeccCCcCcc-c---c-------------------CC-----ccccCCcceEeeccchhHhhhh
Confidence 68999999999999988753210 0 0 00 0001112233332211 12222
Q ss_pred EecCCeEEEEECCCCceEEEEeCC-------CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCcceEE
Q 000268 558 AIMDCRICVWNAADGSLVHSLTGH-------TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVD 630 (1757)
Q Consensus 558 Gs~DG~I~IWDl~tgkll~~L~gH-------~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~Vts 630 (1757)
...-+.--+++...+..+..+... ...+.-+.++| +.-+.+++..|+.|+++|..+|.++.....|...+++
T Consensus 458 s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svts 536 (577)
T KOG0642|consen 458 SFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTS 536 (577)
T ss_pred hcccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCeeEecccCCceecccccccccchheeeccceecc
Confidence 222223333444444444443321 23467788999 5578889999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcc
Q 000268 631 GKFSPDGASIILSDDVGQLYILNTGQGES 659 (1757)
Q Consensus 631 lafSPDGk~LAsgs~DG~I~IWdl~tGe~ 659 (1757)
+++.|+|-+|++++.||.+.+|.+..-.+
T Consensus 537 lai~~ng~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 537 LAIDPNGPYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred eeecCCCceEEeecCCceeehhhccchhe
Confidence 99999999999999999999999865433
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-12 Score=156.38 Aligned_cols=277 Identities=12% Similarity=0.141 Sum_probs=174.0
Q ss_pred EEEEeCCceEEEEECCC-CC--ceEEecCCCCceEEEEecCCCCceEEEEEE-eCCCcEEEEecCC-CCccceeecCCCC
Q 000268 300 VASASNDCIIRVWRLPD-GL--PISVLRGHTAAVTAIAFSPRPGSVYQLLSS-SDDGTCRIWDARY-SQFSPRIYIPRPS 374 (1757)
Q Consensus 300 LASgS~DGtIrVWDl~t-g~--~l~~l~gH~~~VtsLafSPdg~~~~~LaSg-s~DGtIrIWDl~t-g~~~~~i~l~~~~ 374 (1757)
.++...++.|.+|++.+ ++ .+..+. +.+....++++|+++ +|+++ ..++.|.+|++.. +.+. ....
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~---~lyv~~~~~~~i~~~~~~~~g~l~-~~~~---- 75 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKR---HLYVGVRPEFRVLSYRIADDGALT-FAAE---- 75 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCC---EEEEEECCCCcEEEEEECCCCceE-Eeee----
Confidence 34446789999999964 43 444454 346678899999987 55544 5688999999863 3221 1100
Q ss_pred ccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeC-CceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEcc
Q 000268 375 DAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSG 453 (1757)
Q Consensus 375 ~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~-DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSp 453 (1757)
......+..++|+|+|++|++++. ++.|.+|++.+... ....+..+.+ ......++++|
T Consensus 76 --------------~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~-----~~~~~~~~~~-~~~~~~~~~~p 135 (330)
T PRK11028 76 --------------SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGI-----PVAPIQIIEG-LEGCHSANIDP 135 (330)
T ss_pred --------------ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCC-----CCCceeeccC-CCcccEeEeCC
Confidence 001123568999999998887764 88999999853211 0112222222 23456778888
Q ss_pred CccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCc
Q 000268 454 CAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPR 533 (1757)
Q Consensus 454 dg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~ 533 (1757)
++ ...+++...++.|.+||+.+....... ....
T Consensus 136 ~g-------------------------~~l~v~~~~~~~v~v~d~~~~g~l~~~----------------------~~~~ 168 (330)
T PRK11028 136 DN-------------------------RTLWVPCLKEDRIRLFTLSDDGHLVAQ----------------------EPAE 168 (330)
T ss_pred CC-------------------------CEEEEeeCCCCEEEEEEECCCCccccc----------------------CCCc
Confidence 76 124466677899999999752210000 0000
Q ss_pred eeecCCCCCeeEEEEcCCCCEEEEEec-CCeEEEEECCC--Cc--eEEEEeCCC------CCeEEEEEecCCCcEEEEE-
Q 000268 534 QRILPTPRGVNMIVWSLDNRFVLAAIM-DCRICVWNAAD--GS--LVHSLTGHT------ESTYVLDVHPFNPRIAMSA- 601 (1757)
Q Consensus 534 ~~l~~h~~~VtsVafSPDG~~LaSGs~-DG~I~IWDl~t--gk--ll~~L~gH~------~~VtsLafSPdd~~lLaSg- 601 (1757)
.. .........++|+|+|++|+++.. ++.|.+|++.. ++ .+..+..+. .....+.++| ++++|+++
T Consensus 169 ~~-~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~lyv~~ 246 (330)
T PRK11028 169 VT-TVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHLYACD 246 (330)
T ss_pred ee-cCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEEEEec
Confidence 00 011234567899999999988876 89999999973 33 344443221 1234688999 55555555
Q ss_pred eCCCcEEEEeCCCCc----eEEEEeecCcceEEEEEcCCCCEEEEEeC-CCeEEEEECC
Q 000268 602 GYDGKTIVWDIWEGI----PIRIYEISRFRLVDGKFSPDGASIILSDD-VGQLYILNTG 655 (1757)
Q Consensus 602 s~DG~IrIWDl~tg~----~l~~l~~~~~~VtslafSPDGk~LAsgs~-DG~I~IWdl~ 655 (1757)
..++.|.+|++.... .+..+..+ .....++|+|||++|+++.. ++.|.+|++.
T Consensus 247 ~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 247 RTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 457899999996543 22222222 24557899999999998765 8999999874
|
|
| >cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-14 Score=146.28 Aligned_cols=98 Identities=16% Similarity=0.215 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhcC
Q 000268 1645 RNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFG 1724 (1757)
Q Consensus 1645 r~kLls~l~kle~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~ 1724 (1757)
.+.++..+.+... ..+..-+..|..++.....|+||++|++||||+||++||+++.|.++++|..|+++||.||.+||+
T Consensus 5 ~~~i~~~v~~~~~-~~~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn~ 83 (103)
T cd05519 5 MLEIYDAVLNCED-ETGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANARTYNQ 83 (103)
T ss_pred HHHHHHHHHHhcC-cCCCchhHHhcCCCCCCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 3455555555432 223344567788888888999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHH
Q 000268 1725 RNTDLSTKIKRLSDLVTRT 1743 (1757)
Q Consensus 1725 ~~s~i~~~a~~l~~~~~~~ 1743 (1757)
+++.++.+|..|++.|..+
T Consensus 84 ~~s~i~~~A~~l~~~f~~~ 102 (103)
T cd05519 84 EGSIVYEDAVEMEKAFKKK 102 (103)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999875
|
SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-14 Score=145.96 Aligned_cols=83 Identities=22% Similarity=0.410 Sum_probs=78.1
Q ss_pred ccccccccccccccccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHH
Q 000268 1661 RVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLV 1740 (1757)
Q Consensus 1661 ~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~~~s~i~~~a~~l~~~~ 1740 (1757)
+.+-++.|..++.....|+||++|+.||||+||++||+++.|.++++|..|+++||.||.+||+++|.|++.|..|+++|
T Consensus 22 g~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na~~yn~~~S~i~~~A~~L~~~f 101 (106)
T cd05525 22 GQSLAIPFINLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAEKYYGRKSPIGRDVCRLRKAY 101 (106)
T ss_pred CCcccHhhccCCCcccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 34556888888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 000268 1741 TRT 1743 (1757)
Q Consensus 1741 ~~~ 1743 (1757)
.+.
T Consensus 102 ~~~ 104 (106)
T cd05525 102 YQA 104 (106)
T ss_pred HHc
Confidence 874
|
ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
Probab=99.55 E-value=9e-15 Score=146.77 Aligned_cols=97 Identities=16% Similarity=0.223 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhcCC
Q 000268 1646 NKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGR 1725 (1757)
Q Consensus 1646 ~kLls~l~kle~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~~ 1725 (1757)
.+++..+..+.... +..-...|..+......|+||++|+.||||+||++||++ |.++++|+.|+++||+||.+||++
T Consensus 7 ~~l~~~i~~~~~~~-g~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~~yN~~ 83 (106)
T cd05521 7 KPLYDGIYTLKEEN-GIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNARLYNTK 83 (106)
T ss_pred HHHHHHHHhhcCcC-CCCchHhhhcCCccccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHcCC
Confidence 34444444443322 333445666777778999999999999999999999999 999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHh
Q 000268 1726 NTDLSTKIKRLSDLVTRTLS 1745 (1757)
Q Consensus 1726 ~s~i~~~a~~l~~~~~~~l~ 1745 (1757)
++.++++|..|+++|.++|.
T Consensus 84 ~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 84 GSVIYKYALILEKYINDVII 103 (106)
T ss_pred CCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999874
|
Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-12 Score=140.79 Aligned_cols=287 Identities=13% Similarity=0.170 Sum_probs=198.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCceEEEEECCC---------C-CceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEE
Q 000268 287 DITDLAVSSNNALVASASNDCIIRVWRLPD---------G-LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356 (1757)
Q Consensus 287 ~VtsLafSPDg~lLASgS~DGtIrVWDl~t---------g-~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrI 356 (1757)
.|.+-+|+|.+++|++|..+|.|.+..+.+ | ..+...++|.++|+.++|..+ +|++|+. |.|+-
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~-----~Lls~gd-G~V~g 85 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD-----FLLSGGD-GLVYG 85 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh-----heeeccC-ceEEE
Confidence 466678999999999999999999998853 2 344556899999999999943 6777765 99999
Q ss_pred EecCCCCc----cceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCC
Q 000268 357 WDARYSQF----SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQP 432 (1757)
Q Consensus 357 WDl~tg~~----~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~ 432 (1757)
|..+.... ...+.+..| .......--.|+++...|..+-|++++.|+.++.||+.+
T Consensus 86 w~W~E~~es~~~K~lwe~~~P-----------~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~--------- 145 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIP-----------MQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLED--------- 145 (325)
T ss_pred eeehhhhhhccchhhhhhcCc-----------cccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecC---------
Confidence 98764332 111111111 001011233588999998776677777899999999976
Q ss_pred CcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccc
Q 000268 433 NHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQ 512 (1757)
Q Consensus 433 ~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~ 512 (1757)
++..+.+.||++.|.++.--.. ...+++|+.||+++|||.++++.........
T Consensus 146 G~i~r~~rGHtDYvH~vv~R~~--------------------------~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk- 198 (325)
T KOG0649|consen 146 GRIQREYRGHTDYVHSVVGRNA--------------------------NGQILSGAEDGTVRVWDTKTQKHVSMIEPYK- 198 (325)
T ss_pred CEEEEEEcCCcceeeeeeeccc--------------------------CcceeecCCCccEEEEeccccceeEEecccc-
Confidence 5567899999999999987322 2489999999999999999876433222111
Q ss_pred cccccCCCCCCCCCCCCCCCceeecCCC-CCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEe
Q 000268 513 AYHLKVPPPPMPPQPPRGGPRQRILPTP-RGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVH 591 (1757)
Q Consensus 513 ~~~l~~~~~~~~~~~~~~~~~~~l~~h~-~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafS 591 (1757)
....+.+|. ..|.+++. +..+|++|+. -.+.+|.+...++..+|. -...|..+.|-
T Consensus 199 -------------------~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrsse~t~vfp-ipa~v~~v~F~ 255 (325)
T KOG0649|consen 199 -------------------NPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSESTCVFP-IPARVHLVDFV 255 (325)
T ss_pred -------------------ChhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccCCCceEEEe-cccceeEeeee
Confidence 011112222 33666654 5568988865 479999999988888775 23457777774
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCcceEEEEEcCCC-CEEEEEeCCCeEEEEE
Q 000268 592 PFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDG-ASIILSDDVGQLYILN 653 (1757)
Q Consensus 592 Pdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSPDG-k~LAsgs~DG~I~IWd 653 (1757)
...++++|....|.-|.+ .|.+-......+...++..|+..- ++|-.++....+.|+.
T Consensus 256 ---~d~vl~~G~g~~v~~~~l-~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 256 ---DDCVLIGGEGNHVQSYTL-NGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred ---cceEEEeccccceeeeee-ccEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 356778888889999988 677666666555566666665443 3444556666776664
|
|
| >cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-14 Score=144.99 Aligned_cols=93 Identities=18% Similarity=0.252 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhhhcccccccccccccccc--cCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhcC
Q 000268 1647 KLLSAFAKLEQSANRVQDQYGVQKLKQVS--QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFG 1724 (1757)
Q Consensus 1647 kLls~l~kle~~~~~~~~~~~~~~~~~~~--~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~ 1724 (1757)
.+..++.++. .+...+.|..++... ..|+|+++|+.||||+||++||+++.|+++++|..|+++||.||.+||+
T Consensus 4 ~c~~il~~l~----~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~ 79 (99)
T cd05506 4 QCGTLLRKLM----KHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNP 79 (99)
T ss_pred HHHHHHHHHH----hCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 3444555553 245567777777654 6799999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHH
Q 000268 1725 RNTDLSTKIKRLSDLVTRT 1743 (1757)
Q Consensus 1725 ~~s~i~~~a~~l~~~~~~~ 1743 (1757)
+++.++.+|..|++.|..+
T Consensus 80 ~~s~i~~~a~~l~~~fe~~ 98 (99)
T cd05506 80 PGNDVHTMAKELLKIFETR 98 (99)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999764
|
Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.8e-13 Score=147.56 Aligned_cols=293 Identities=17% Similarity=0.223 Sum_probs=202.8
Q ss_pred CCeEEEEEcC--C-CCEEEEEeC----CceEEEEEC--CCCCceEEe-cCCCCceEEEEecCCCC--ceEEEEEEeCCCc
Q 000268 286 GDITDLAVSS--N-NALVASASN----DCIIRVWRL--PDGLPISVL-RGHTAAVTAIAFSPRPG--SVYQLLSSSDDGT 353 (1757)
Q Consensus 286 ~~VtsLafSP--D-g~lLASgS~----DGtIrVWDl--~tg~~l~~l-~gH~~~VtsLafSPdg~--~~~~LaSgs~DGt 353 (1757)
-.+.++.|+. + +-+||.|+. .+.|.|-.+ .+++.+..- ..|.-+++.+.|.|+.. .+.+|++++ -.
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~ 122 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DF 122 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--Ce
Confidence 4577888873 2 337888864 356666554 344433222 36889999999999863 333455544 46
Q ss_pred EEEEecCCC--CccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECC-CCCEEEEeeCCceEEEecCCCCCCCCCC
Q 000268 354 CRIWDARYS--QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSD 430 (1757)
Q Consensus 354 IrIWDl~tg--~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSp-dG~~LasGs~DG~IrVWDl~t~~~~~s~ 430 (1757)
+++|.+... .......+ .......+...++++.|+. +-++|.+.+-|.+..|||+.++
T Consensus 123 LRlWri~~ee~~~~~~~~L-------------~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~------ 183 (364)
T KOG0290|consen 123 LRLWRIGDEESRVELQSVL-------------NNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETG------ 183 (364)
T ss_pred EEEEeccCcCCceehhhhh-------------ccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeec------
Confidence 999998743 22111111 0111234566789999987 6689999999999999999764
Q ss_pred CCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccc
Q 000268 431 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510 (1757)
Q Consensus 431 ~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w 510 (1757)
..+.....+-.|...|..|+|...+ -+.|++.+.||.+++||++...-...
T Consensus 184 ~~~~vkTQLIAHDKEV~DIaf~~~s-------------------------~~~FASvgaDGSvRmFDLR~leHSTI---- 234 (364)
T KOG0290|consen 184 VSGTVKTQLIAHDKEVYDIAFLKGS-------------------------RDVFASVGADGSVRMFDLRSLEHSTI---- 234 (364)
T ss_pred cccceeeEEEecCcceeEEEeccCc-------------------------cceEEEecCCCcEEEEEecccccceE----
Confidence 2244566788999999999999754 36999999999999999996331100
Q ss_pred cccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCC-CEEEEEec-CCeEEEEECCC-CceEEEEeCCCCCeEE
Q 000268 511 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN-RFVLAAIM-DCRICVWNAAD-GSLVHSLTGHTESTYV 587 (1757)
Q Consensus 511 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG-~~LaSGs~-DG~I~IWDl~t-gkll~~L~gH~~~Vts 587 (1757)
.|. -.....+...++|++.. +++|+-.+ ...|.|.|++. ..++..|.+|.+.|++
T Consensus 235 --IYE--------------------~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNg 292 (364)
T KOG0290|consen 235 --IYE--------------------DPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNG 292 (364)
T ss_pred --Eec--------------------CCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccc
Confidence 000 00113456677887644 56666444 45699999976 5688999999999999
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEeCCCC------ceEEEEeecCcceEEEEEcC-CCCEEEEEeCCCeEEEE
Q 000268 588 LDVHPFNPRIAMSAGYDGKTIVWDIWEG------IPIRIYEISRFRLVDGKFSP-DGASIILSDDVGQLYIL 652 (1757)
Q Consensus 588 LafSPdd~~lLaSgs~DG~IrIWDl~tg------~~l~~l~~~~~~VtslafSP-DGk~LAsgs~DG~I~IW 652 (1757)
|+|.|.....++|+|.|..+.|||+..- .++..+. ..+.|..+.|++ .+.+|+++.. ..+.|.
T Consensus 293 IaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~-kkleiL 362 (364)
T KOG0290|consen 293 IAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG-KKLEIL 362 (364)
T ss_pred eEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEec-CeeeEE
Confidence 9999988899999999999999999653 2233343 456799999996 4667777654 444443
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4e-13 Score=149.81 Aligned_cols=242 Identities=20% Similarity=0.308 Sum_probs=180.5
Q ss_pred cCCCCEEEEEECCCC-----CEEEEEcCCceEEEEecCC--CeEE--EEE-----ecCCCCeEEEEEcC-CCCEEEEEeC
Q 000268 241 GHRNAVYCAIFDRSG-----RYVITGSDDRLVKIWSMET--AYCL--ASC-----RGHEGDITDLAVSS-NNALVASASN 305 (1757)
Q Consensus 241 GH~~~V~~VaFSPDG-----~~LATGS~DGtIkIWDl~t--g~~l--~tL-----~gH~~~VtsLafSP-Dg~lLASgS~ 305 (1757)
.|.-+++.+.|.|+. ++|||.++ .++||.+.. .+.. ..+ ..+.+++++..|+. +-++|.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 578899999999986 36777654 799999863 2211 111 24678999999986 5678999999
Q ss_pred CceEEEEECCCCCc---eEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCC
Q 000268 306 DCIIRVWRLPDGLP---ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 382 (1757)
Q Consensus 306 DGtIrVWDl~tg~~---l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~ 382 (1757)
|-+..|||+++|.. ...|-.|...|..|+|...+. ..|++.|.||.|++||++.......++- .+
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~--~~FASvgaDGSvRmFDLR~leHSTIIYE-~p--------- 239 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSR--DVFASVGADGSVRMFDLRSLEHSTIIYE-DP--------- 239 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCcc--ceEEEecCCCcEEEEEecccccceEEec-CC---------
Confidence 99999999998743 456778999999999999654 4899999999999999998765444431 11
Q ss_pred CCCCCCCCCCcceEEEEECC-CCCEEEEeeCC-ceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccc
Q 000268 383 APSSSAGPQSHQIFCCAFNA-NGTVFVTGSSD-TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 460 (1757)
Q Consensus 383 ~~~~~~~~~~~~V~slafSp-dG~~LasGs~D-G~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~ 460 (1757)
........++|++ |-+++|+-..| ..|.|.|++. +...+..+.+|.+.|++|+|.|..
T Consensus 240 -------~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~--------P~tpva~L~~H~a~VNgIaWaPhS----- 299 (364)
T KOG0290|consen 240 -------SPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRV--------PCTPVARLRNHQASVNGIAWAPHS----- 299 (364)
T ss_pred -------CCCCcceeeccCcCCchHHhhhhcCCceEEEEEecC--------CCcceehhhcCcccccceEecCCC-----
Confidence 1145577889988 45677765544 5799999975 356788999999999999999975
Q ss_pred ccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCC
Q 000268 461 SLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP 540 (1757)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~ 540 (1757)
...|++++.|..+.|||+.+--. .....++.... ..
T Consensus 300 --------------------~~hictaGDD~qaliWDl~q~~~-----------------------~~~~dPilay~-a~ 335 (364)
T KOG0290|consen 300 --------------------SSHICTAGDDCQALIWDLQQMPR-----------------------ENGEDPILAYT-AG 335 (364)
T ss_pred --------------------CceeeecCCcceEEEEecccccc-----------------------cCCCCchhhhh-cc
Confidence 46899999999999999985110 01112222222 55
Q ss_pred CCeeEEEEcC-CCCEEEEEec
Q 000268 541 RGVNMIVWSL-DNRFVLAAIM 560 (1757)
Q Consensus 541 ~~VtsVafSP-DG~~LaSGs~ 560 (1757)
..|+.+.|++ .+.+|+++..
T Consensus 336 ~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 336 GEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred ceeeeeeecccCCCEEEEEec
Confidence 6799999995 5667777664
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.3e-12 Score=152.54 Aligned_cols=284 Identities=13% Similarity=0.170 Sum_probs=172.0
Q ss_pred EEEcCCceEEEEecCC-Ce--EEEEEecCCCCeEEEEEcCCCCEEEEEe-CCceEEEEECC-CCCc--eEEecCCCCceE
Q 000268 259 ITGSDDRLVKIWSMET-AY--CLASCRGHEGDITDLAVSSNNALVASAS-NDCIIRVWRLP-DGLP--ISVLRGHTAAVT 331 (1757)
Q Consensus 259 ATGS~DGtIkIWDl~t-g~--~l~tL~gH~~~VtsLafSPDg~lLASgS-~DGtIrVWDl~-tg~~--l~~l~gH~~~Vt 331 (1757)
++...++.|.+|++.+ |+ .+.++. +.+....++++|++++|++++ .++.|.+|++. ++.. +.... ..+...
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~ 83 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPT 83 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCce
Confidence 3446789999999964 43 445554 346688899999999887764 47889999996 3432 22222 334567
Q ss_pred EEEecCCCCceEEEEEEe-CCCcEEEEecCCCCcc-ceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEE
Q 000268 332 AIAFSPRPGSVYQLLSSS-DDGTCRIWDARYSQFS-PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT 409 (1757)
Q Consensus 332 sLafSPdg~~~~~LaSgs-~DGtIrIWDl~tg~~~-~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~Las 409 (1757)
.++|+|+++ +|++++ .++.|.+|++.+.... ..+.. ..+...+.+++|+|+|+++++
T Consensus 84 ~i~~~~~g~---~l~v~~~~~~~v~v~~~~~~g~~~~~~~~------------------~~~~~~~~~~~~~p~g~~l~v 142 (330)
T PRK11028 84 HISTDHQGR---FLFSASYNANCVSVSPLDKDGIPVAPIQI------------------IEGLEGCHSANIDPDNRTLWV 142 (330)
T ss_pred EEEECCCCC---EEEEEEcCCCeEEEEEECCCCCCCCceee------------------ccCCCcccEeEeCCCCCEEEE
Confidence 899999987 555554 5899999999643211 11100 011223567889999988865
Q ss_pred ee-CCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEc
Q 000268 410 GS-SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCS 488 (1757)
Q Consensus 410 Gs-~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS 488 (1757)
++ .++.|.+||+.+..... ........ ... ......+.|+|++ .+++++.
T Consensus 143 ~~~~~~~v~v~d~~~~g~l~-~~~~~~~~-~~~-g~~p~~~~~~pdg--------------------------~~lyv~~ 193 (330)
T PRK11028 143 PCLKEDRIRLFTLSDDGHLV-AQEPAEVT-TVE-GAGPRHMVFHPNQ--------------------------QYAYCVN 193 (330)
T ss_pred eeCCCCEEEEEEECCCCccc-ccCCCcee-cCC-CCCCceEEECCCC--------------------------CEEEEEe
Confidence 54 56999999996521110 00000011 111 2335678999886 4665554
Q ss_pred -CCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEe-cCCeEEE
Q 000268 489 -RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI-MDCRICV 566 (1757)
Q Consensus 489 -~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs-~DG~I~I 566 (1757)
.+++|.+|++..... .. ..... +...+ .. ..+......+.|+|+|++|+++. .++.|.+
T Consensus 194 ~~~~~v~v~~~~~~~~--~~-~~~~~--~~~~p--------~~------~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v 254 (330)
T PRK11028 194 ELNSSVDVWQLKDPHG--EI-ECVQT--LDMMP--------AD------FSDTRWAADIHITPDGRHLYACDRTASLISV 254 (330)
T ss_pred cCCCEEEEEEEeCCCC--CE-EEEEE--EecCC--------Cc------CCCCccceeEEECCCCCEEEEecCCCCeEEE
Confidence 499999999973210 00 00000 00000 00 00112234688999999999885 4789999
Q ss_pred EECCCCceEEEEeCC---CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000268 567 WNAADGSLVHSLTGH---TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1757)
Q Consensus 567 WDl~tgkll~~L~gH---~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~ 613 (1757)
|++........+.++ ......+.++|++..++++...+++|.||++.
T Consensus 255 ~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 255 FSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 998653322222222 12345789999555555555569999999874
|
|
| >cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.5e-14 Score=143.60 Aligned_cols=97 Identities=15% Similarity=0.246 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhhhcccccccccccccccc--cCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhc
Q 000268 1646 NKLLSAFAKLEQSANRVQDQYGVQKLKQVS--QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYF 1723 (1757)
Q Consensus 1646 ~kLls~l~kle~~~~~~~~~~~~~~~~~~~--~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn 1723 (1757)
.++..++.+|... ...+..+.|..+++.. ..|+|+++|++||||+||++||+++.|+++++|..|+++|++||..||
T Consensus 3 ~~c~~il~~l~~~-~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn 81 (102)
T cd05498 3 KFCSGILKELFSK-KHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYN 81 (102)
T ss_pred hHHHHHHHHHHhC-CCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 4555666666442 1224456677766654 589999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHH
Q 000268 1724 GRNTDLSTKIKRLSDLVTRT 1743 (1757)
Q Consensus 1724 ~~~s~i~~~a~~l~~~~~~~ 1743 (1757)
++++.++.+|+.|++.|.++
T Consensus 82 ~~~s~i~~~a~~l~~~fe~~ 101 (102)
T cd05498 82 PPDHPVHAMARKLQDVFEDR 101 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999874
|
Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.2e-14 Score=164.11 Aligned_cols=315 Identities=18% Similarity=0.235 Sum_probs=232.2
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEe-cCCCCceEEEEecCCCCceEEEEEEeCCCcE
Q 000268 276 YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL-RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354 (1757)
Q Consensus 276 ~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l-~gH~~~VtsLafSPdg~~~~~LaSgs~DGtI 354 (1757)
.+...|..|.+.|..|.|+..|..|++|+.|..|.+||+..++....+ .||...|....|.|.... ..+++++.||.|
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d-~ti~~~s~dgqv 211 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGD-RTIVTSSRDGQV 211 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCC-cCceeccccCce
Confidence 345567899999999999999999999999999999999999877666 589999999999997643 379999999999
Q ss_pred EEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCC-CEEEEeeCCceEEEecCCCCCCCCCCCCC
Q 000268 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPN 433 (1757)
Q Consensus 355 rIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG-~~LasGs~DG~IrVWDl~t~~~~~s~~~~ 433 (1757)
++=.+.....+.. ......|.+.|.-++.-|+. ..|.+++.|+.+.-+|++.... .
T Consensus 212 r~s~i~~t~~~e~-----------------t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~p------a 268 (559)
T KOG1334|consen 212 RVSEILETGYVEN-----------------TKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVP------A 268 (559)
T ss_pred eeeeeccccceec-----------------ceecccccCccceeeecCCCCCcccccccccceeeeeeccCCc------c
Confidence 9876543322211 11234678889999998865 5688899999999999976432 2
Q ss_pred cceeeecCCCC---CceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccc
Q 000268 434 HEIDVLSGHEN---DVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510 (1757)
Q Consensus 434 ~~i~~l~gH~~---~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w 510 (1757)
..+.....+.. ....++..|.. ...+++|+.|-.+++||.+.-.......
T Consensus 269 ~~~~cr~~~~~~~v~L~~Ia~~P~n-------------------------t~~faVgG~dqf~RvYD~R~~~~e~~n~-- 321 (559)
T KOG1334|consen 269 EKFVCREADEKERVGLYTIAVDPRN-------------------------TNEFAVGGSDQFARVYDQRRIDKEENNG-- 321 (559)
T ss_pred ceeeeeccCCccceeeeeEecCCCC-------------------------ccccccCChhhhhhhhcccchhhccccc--
Confidence 22223333333 34556666543 2589999999999999987522111100
Q ss_pred cccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCC--C----------ceEE-E
Q 000268 511 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD--G----------SLVH-S 577 (1757)
Q Consensus 511 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~t--g----------kll~-~ 577 (1757)
.+ ....+..........|++++|+.++.-|+++..|-.|++|.-.- | ..+. .
T Consensus 322 --~~-------------~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~v 386 (559)
T KOG1334|consen 322 --VL-------------DKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRV 386 (559)
T ss_pred --hh-------------hhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchh
Confidence 00 00011111123345699999999998888888899999995432 3 2233 3
Q ss_pred EeCCCC--CeEEEEE-ecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 000268 578 LTGHTE--STYVLDV-HPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 654 (1757)
Q Consensus 578 L~gH~~--~VtsLaf-SPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl 654 (1757)
++||.. .|.++-| -| ...++++|+.-|.|.||+-.+++.++.+.+...-|.||.=+|--..||+++-|..|+||-.
T Consensus 387 YKGHrN~~TVKgVNFfGP-rsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 387 YKGHRNSRTVKGVNFFGP-RSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred hcccccccccceeeeccC-ccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecC
Confidence 788865 4777766 34 4679999999999999999999999999877777889999999999999999999999987
Q ss_pred CCC
Q 000268 655 GQG 657 (1757)
Q Consensus 655 ~tG 657 (1757)
.+.
T Consensus 466 ~~~ 468 (559)
T KOG1334|consen 466 LTA 468 (559)
T ss_pred Ccc
Confidence 543
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-12 Score=151.47 Aligned_cols=216 Identities=15% Similarity=0.221 Sum_probs=167.8
Q ss_pred CCCCCCCCCcceEEEEECC-CCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccc
Q 000268 384 PSSSAGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSL 462 (1757)
Q Consensus 384 ~~~~~~~~~~~V~slafSp-dG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~ 462 (1757)
......+|.+.|..++|+| +...||+|+.|.+|.||.+-.+.. .......+..+.||...|-.++|.|..
T Consensus 73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l--~~~ltepvv~L~gH~rrVg~V~wHPtA------- 143 (472)
T KOG0303|consen 73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGL--TRDLTEPVVELYGHQRRVGLVQWHPTA------- 143 (472)
T ss_pred CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCccc--ccCcccceEEEeecceeEEEEeecccc-------
Confidence 3455678999999999999 667899999999999999954322 233346788899999999999999975
Q ss_pred ccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCC
Q 000268 463 ADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRG 542 (1757)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~ 542 (1757)
.+.|++++.|.+|.||++.++. .+.. ..|...
T Consensus 144 ------------------~NVLlsag~Dn~v~iWnv~tge-----------------------------ali~-l~hpd~ 175 (472)
T KOG0303|consen 144 ------------------PNVLLSAGSDNTVSIWNVGTGE-----------------------------ALIT-LDHPDM 175 (472)
T ss_pred ------------------hhhHhhccCCceEEEEeccCCc-----------------------------eeee-cCCCCe
Confidence 4789999999999999999754 1122 338899
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCC-eEEEEEecCCCcEEEEE---eCCCcEEEEeCCCC---
Q 000268 543 VNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTES-TYVLDVHPFNPRIAMSA---GYDGKTIVWDIWEG--- 615 (1757)
Q Consensus 543 VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~-VtsLafSPdd~~lLaSg---s~DG~IrIWDl~tg--- 615 (1757)
|.++.|+.||.+|++++.|..|+|||..+|+++..-.+|.+. -..+.|-. ++.++.|| ..+..+-|||..+-
T Consensus 176 i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~-~g~i~tTGfsr~seRq~aLwdp~nl~eP 254 (472)
T KOG0303|consen 176 VYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA-SGKIFTTGFSRMSERQIALWDPNNLEEP 254 (472)
T ss_pred EEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec-cCceeeeccccccccceeccCcccccCc
Confidence 999999999999999999999999999999999998888774 23344555 44554443 25778999987653
Q ss_pred ceEEEEeecCcceEEEEEcCCCCEEE-EEeCCCeEEEEECCCCc
Q 000268 616 IPIRIYEISRFRLVDGKFSPDGASII-LSDDVGQLYILNTGQGE 658 (1757)
Q Consensus 616 ~~l~~l~~~~~~VtslafSPDGk~LA-sgs~DG~I~IWdl~tGe 658 (1757)
-.+..+. ...+|.---|.||...|. +|-.||.|+-|.+..-.
T Consensus 255 ~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 255 IALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 2334444 344566667899988876 56779999999986543
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.7e-12 Score=139.06 Aligned_cols=279 Identities=16% Similarity=0.252 Sum_probs=189.8
Q ss_pred CCEEEEEECCCCCEEEEEcCCceEEEEecCC----------CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEE
Q 000268 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMET----------AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1757)
Q Consensus 244 ~~V~~VaFSPDG~~LATGS~DGtIkIWDl~t----------g~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWD 313 (1757)
..|.+-+++|.+++|+.|..+|+|-+..+.. ...+...++|.++|+.++|. ..+|++|+ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 4577778999999999999999999998753 23445568999999999998 44677776 59999998
Q ss_pred CCCCCc------eEEe--cCC-----CCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCC
Q 000268 314 LPDGLP------ISVL--RGH-----TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGR 380 (1757)
Q Consensus 314 l~tg~~------l~~l--~gH-----~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~ 380 (1757)
+..... +..+ .-| --.|+++-..|..+ -++.++.|+.+..||+++|+....+
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en---Si~~AgGD~~~y~~dlE~G~i~r~~------------ 152 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN---SILFAGGDGVIYQVDLEDGRIQREY------------ 152 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC---cEEEecCCeEEEEEEecCCEEEEEE------------
Confidence 753211 1111 112 24688899998876 5777779999999999999876665
Q ss_pred CCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCC-CceEEEEccCccccc
Q 000268 381 NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEN-DVNYVQFSGCAVASR 459 (1757)
Q Consensus 381 ~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~-~V~sLafSpdg~~s~ 459 (1757)
.+|...|.+++--.....|++|+.||++||||.++.+......+.+....+..|-+ .|.+++.+.
T Consensus 153 --------rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e------ 218 (325)
T KOG0649|consen 153 --------RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE------ 218 (325)
T ss_pred --------cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC------
Confidence 46889999998855555699999999999999998765444444333334444433 355555442
Q ss_pred cccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCC
Q 000268 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT 539 (1757)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h 539 (1757)
+.+++| ....+.+|++++.++ ..+.+-
T Consensus 219 ----------------------dWlvCG-gGp~lslwhLrsse~------------------------------t~vfpi 245 (325)
T KOG0649|consen 219 ----------------------DWLVCG-GGPKLSLWHLRSSES------------------------------TCVFPI 245 (325)
T ss_pred ----------------------ceEEec-CCCceeEEeccCCCc------------------------------eEEEec
Confidence 355554 456789999986331 122333
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 000268 540 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVW 610 (1757)
Q Consensus 540 ~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIW 610 (1757)
...+..+.|- ...+++++..+.|.-|.+ +|.+-..........+...|+-.--+++-.+|..+.+.|+
T Consensus 246 pa~v~~v~F~--~d~vl~~G~g~~v~~~~l-~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 246 PARVHLVDFV--DDCVLIGGEGNHVQSYTL-NGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred ccceeEeeee--cceEEEeccccceeeeee-ccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 4556666664 446777887788988887 4555555554444456666644223455556666666554
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-11 Score=151.41 Aligned_cols=336 Identities=15% Similarity=0.126 Sum_probs=206.0
Q ss_pred EEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecC
Q 000268 258 VITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSP 337 (1757)
Q Consensus 258 LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSP 337 (1757)
+++-..+|.|.|.|..+.+.+.++......-..++|+|||+++++++.||.|.++|+.+++.++.+... ....++++++
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~ 87 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSP 87 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcC
Confidence 356677899999999999999999865544456789999999999999999999999999999998754 4568899999
Q ss_pred CCCceEEEE-EEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeC-Cce
Q 000268 338 RPGSVYQLL-SSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTL 415 (1757)
Q Consensus 338 dg~~~~~La-Sgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~-DG~ 415 (1757)
||+ +++ +....+.|.++|..+.+.+..+...... .......+.++..++....+++.-. .+.
T Consensus 88 DG~---~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~-------------~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~ 151 (369)
T PF02239_consen 88 DGK---YVYVANYEPGTVSVIDAETLEPVKTIPTGGMP-------------VDGPESRVAAIVASPGRPEFVVNLKDTGE 151 (369)
T ss_dssp TTT---EEEEEEEETTEEEEEETTT--EEEEEE--EE--------------TTTS---EEEEEE-SSSSEEEEEETTTTE
T ss_pred CCC---EEEEEecCCCceeEeccccccceeeccccccc-------------ccccCCCceeEEecCCCCEEEEEEccCCe
Confidence 998 555 5557899999999999888776431110 0013455778888888885555544 578
Q ss_pred EEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcE-EEEcCCCeEE
Q 000268 416 ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI-VTCSRDGSAI 494 (1757)
Q Consensus 416 IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~L-vSgS~DGtI~ 494 (1757)
|.+.|..... .................|.|++ .++ ++...+..|.
T Consensus 152 I~vVdy~d~~--------~~~~~~i~~g~~~~D~~~dpdg--------------------------ry~~va~~~sn~i~ 197 (369)
T PF02239_consen 152 IWVVDYSDPK--------NLKVTTIKVGRFPHDGGFDPDG--------------------------RYFLVAANGSNKIA 197 (369)
T ss_dssp EEEEETTTSS--------CEEEEEEE--TTEEEEEE-TTS--------------------------SEEEEEEGGGTEEE
T ss_pred EEEEEecccc--------ccceeeecccccccccccCccc--------------------------ceeeecccccceeE
Confidence 8888875421 1111222233455667888875 344 4456677899
Q ss_pred EEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCC--eeEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 000268 495 IWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRG--VNMIVWSLDNRFVLAAIMDCRICVWNAADG 572 (1757)
Q Consensus 495 IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~--VtsVafSPDG~~LaSGs~DG~I~IWDl~tg 572 (1757)
++|..+++..... .... .+...+... ..|... +. +.+..+...++.-....+.+|+..+.
T Consensus 198 viD~~~~k~v~~i---------~~g~------~p~~~~~~~-~php~~g~vw--~~~~~~~~~~~~ig~~~v~v~d~~~w 259 (369)
T PF02239_consen 198 VIDTKTGKLVALI---------DTGK------KPHPGPGAN-FPHPGFGPVW--ATSGLGYFAIPLIGTDPVSVHDDYAW 259 (369)
T ss_dssp EEETTTTEEEEEE---------E-SS------SBEETTEEE-EEETTTEEEE--EEEBSSSSEEEEEE--TTT-STTTBT
T ss_pred EEeeccceEEEEe---------eccc------ccccccccc-ccCCCcceEE--eeccccceecccccCCccccchhhcC
Confidence 9998864421110 0000 000001111 112221 22 12233444444444456778999999
Q ss_pred ceEEEEeCCCCCeEEEEEecCCCcEEEEE----eCCCcEEEEeCCCCceEEEEeecC-cceEEEEEcCCCCEEEEE--eC
Q 000268 573 SLVHSLTGHTESTYVLDVHPFNPRIAMSA----GYDGKTIVWDIWEGIPIRIYEISR-FRLVDGKFSPDGASIILS--DD 645 (1757)
Q Consensus 573 kll~~L~gH~~~VtsLafSPdd~~lLaSg----s~DG~IrIWDl~tg~~l~~l~~~~-~~VtslafSPDGk~LAsg--s~ 645 (1757)
+.++++....+. .-+..|| +++++... ...+.|.|+|..+.+.+..+.... ..+..+.|++||+.+.++ ..
T Consensus 260 kvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~ 337 (369)
T PF02239_consen 260 KVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDG 337 (369)
T ss_dssp SEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--
T ss_pred eEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecC
Confidence 999999987777 7788899 55555554 556899999999998887775333 258999999999977765 44
Q ss_pred CCeEEEEECCCCccccccc
Q 000268 646 VGQLYILNTGQGESQKDAK 664 (1757)
Q Consensus 646 DG~I~IWdl~tGe~~~~~~ 664 (1757)
+|.|.|||..+.+..+.++
T Consensus 338 ~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 338 NGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp TTEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEECCCcEEEEEEE
Confidence 4579999999998877655
|
... |
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.2e-13 Score=155.92 Aligned_cols=264 Identities=14% Similarity=0.177 Sum_probs=186.7
Q ss_pred cCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEE-cC-------CCCEEEEEeCCceEEEE
Q 000268 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAV-SS-------NNALVASASNDCIIRVW 312 (1757)
Q Consensus 241 GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLaf-SP-------Dg~lLASgS~DGtIrVW 312 (1757)
-|...|.|+.|+.+...+.+++++..++-|++.+. ....+.-....|....+ -+ ....++.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~-s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRD-SVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccch-hhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 46677789999988887777666555555555432 22222211222211111 11 23478888899999998
Q ss_pred ECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCC
Q 000268 313 RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1757)
Q Consensus 313 Dl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~ 392 (1757)
+ ..|+.-..+..|.+.|.+-.|+|+|. -|++++.||.|++|.-. |-+..++ ....
T Consensus 91 ~-k~~rVE~sv~AH~~A~~~gRW~~dGt---gLlt~GEDG~iKiWSrs-GMLRStl--------------------~Q~~ 145 (737)
T KOG1524|consen 91 N-KSARVERSISAHAAAISSGRWSPDGA---GLLTAGEDGVIKIWSRS-GMLRSTV--------------------VQNE 145 (737)
T ss_pred c-ccchhhhhhhhhhhhhhhcccCCCCc---eeeeecCCceEEEEecc-chHHHHH--------------------hhcC
Confidence 8 57787888899999999999999998 79999999999999743 3222221 2245
Q ss_pred cceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCC
Q 000268 393 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 472 (1757)
Q Consensus 393 ~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~ 472 (1757)
..|.|++|.|+..-++.+. .+.+.|=.+ .+...+-....|.+-|.++.|++..
T Consensus 146 ~~v~c~~W~p~S~~vl~c~-g~h~~IKpL---------~~n~k~i~WkAHDGiiL~~~W~~~s----------------- 198 (737)
T KOG1524|consen 146 ESIRCARWAPNSNSIVFCQ-GGHISIKPL---------AANSKIIRWRAHDGLVLSLSWSTQS----------------- 198 (737)
T ss_pred ceeEEEEECCCCCceEEec-CCeEEEeec---------ccccceeEEeccCcEEEEeecCccc-----------------
Confidence 6799999999886555443 345555444 2344566789999999999999875
Q ss_pred cccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCC
Q 000268 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN 552 (1757)
Q Consensus 473 ~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG 552 (1757)
+.+++|+.|-..+|||... ..+.....|..+|++++|.|+
T Consensus 199 ---------~lI~sgGED~kfKvWD~~G------------------------------~~Lf~S~~~ey~ITSva~npd- 238 (737)
T KOG1524|consen 199 ---------NIIASGGEDFRFKIWDAQG------------------------------ANLFTSAAEEYAITSVAFNPE- 238 (737)
T ss_pred ---------cceeecCCceeEEeecccC------------------------------cccccCChhccceeeeeeccc-
Confidence 7999999999999999762 334444568889999999999
Q ss_pred CEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 000268 553 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVW 610 (1757)
Q Consensus 553 ~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIW 610 (1757)
+.++.++.+ ++++ -....+.|..++||+ ++..+++|+..|.+.+=
T Consensus 239 ~~~~v~S~n-t~R~-----------~~p~~GSifnlsWS~-DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 239 KDYLLWSYN-TARF-----------SSPRVGSIFNLSWSA-DGTQATCGTSTGQLIVA 283 (737)
T ss_pred cceeeeeee-eeee-----------cCCCccceEEEEEcC-CCceeeccccCceEEEe
Confidence 667766653 3431 123467899999999 67777888888877653
|
|
| >cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.8e-14 Score=140.49 Aligned_cols=94 Identities=18% Similarity=0.298 Sum_probs=81.1
Q ss_pred HHHHHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhcCCCc
Q 000268 1648 LLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNT 1727 (1757)
Q Consensus 1648 Lls~l~kle~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~~~s 1727 (1757)
++..+.++... .+..-...|..++.....|+||++|++||||+||++||+++.|.++.+|..|+++||.||..||++++
T Consensus 9 i~~~v~~~~d~-~g~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s 87 (104)
T cd05522 9 ILKGLRKERDE-NGRLLTLHFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLYNENDS 87 (104)
T ss_pred HHHHHHHHhCc-CCCcccHHHhcCCCccccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 33444444332 23455677788888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 000268 1728 DLSTKIKRLSDLVTR 1742 (1757)
Q Consensus 1728 ~i~~~a~~l~~~~~~ 1742 (1757)
.++.+|..|++.|.+
T Consensus 88 ~i~~~A~~l~~~f~~ 102 (104)
T cd05522 88 QEYKDAVLLEKEARL 102 (104)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999986
|
Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.2e-12 Score=153.19 Aligned_cols=314 Identities=14% Similarity=0.100 Sum_probs=187.6
Q ss_pred cccccceeEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe-CC
Q 000268 228 TMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS-ND 306 (1757)
Q Consensus 228 ~~~~~~k~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS-~D 306 (1757)
-+..+.+.+.++..+...-..++|+|||+++.+++.||.|.++|+.+++.+++++.. ....++++++||++|++++ ..
T Consensus 21 iD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~ 99 (369)
T PF02239_consen 21 IDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDGKYVYVANYEP 99 (369)
T ss_dssp EETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TTTEEEEEEEET
T ss_pred EECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCCCCEEEEEecCC
Confidence 355667888899876555455789999999999999999999999999999999853 4578899999999998776 57
Q ss_pred ceEEEEECCCCCceEEecCC-------CCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccC
Q 000268 307 CIIRVWRLPDGLPISVLRGH-------TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAG 379 (1757)
Q Consensus 307 GtIrVWDl~tg~~l~~l~gH-------~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g 379 (1757)
+.|.|+|.++.++++.+... ...+.+|..+|... .++++.-.-+.|.+.|......+.....
T Consensus 100 ~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~--~fVv~lkd~~~I~vVdy~d~~~~~~~~i--------- 168 (369)
T PF02239_consen 100 GTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRP--EFVVNLKDTGEIWVVDYSDPKNLKVTTI--------- 168 (369)
T ss_dssp TEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSS--EEEEEETTTTEEEEEETTTSSCEEEEEE---------
T ss_pred CceeEeccccccceeecccccccccccCCCceeEEecCCCC--EEEEEEccCCeEEEEEeccccccceeee---------
Confidence 99999999999998887532 34678888888765 1344444458888888766543322111
Q ss_pred CCCCCCCCCCCCCcceEEEEECCCCCEEEEe-eCCceEEEecCCCCCCCCCCCCCcceeee----cCCCCCceEEEEccC
Q 000268 380 RNMAPSSSAGPQSHQIFCCAFNANGTVFVTG-SSDTLARVWNACKPNTDDSDQPNHEIDVL----SGHENDVNYVQFSGC 454 (1757)
Q Consensus 380 ~~~~~~~~~~~~~~~V~slafSpdG~~LasG-s~DG~IrVWDl~t~~~~~s~~~~~~i~~l----~gH~~~V~sLafSpd 454 (1757)
..........|+|++++++++ ..++.|.++|..+.+ .+..+ ..|...+..+- .|.
T Consensus 169 ----------~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k---------~v~~i~~g~~p~~~~~~~~p-hp~ 228 (369)
T PF02239_consen 169 ----------KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK---------LVALIDTGKKPHPGPGANFP-HPG 228 (369)
T ss_dssp ----------E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE---------EEEEEE-SSSBEETTEEEEE-ETT
T ss_pred ----------cccccccccccCcccceeeecccccceeEEEeeccce---------EEEEeecccccccccccccc-CCC
Confidence 112346678999999987665 456789999986532 22111 12222332221 111
Q ss_pred ccccccccccCCCCCCCCccccccc---CCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCC
Q 000268 455 AVASRFSLADSSKEDSTPKFKNSWF---CHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGG 531 (1757)
Q Consensus 455 g~~s~~~~~~~~~~~~~~~~~~~~~---~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~ 531 (1757)
. ...|. .....++.-....+.+|+..+ ..
T Consensus 229 ~-------------------g~vw~~~~~~~~~~~~ig~~~v~v~d~~~-----------------------------wk 260 (369)
T PF02239_consen 229 F-------------------GPVWATSGLGYFAIPLIGTDPVSVHDDYA-----------------------------WK 260 (369)
T ss_dssp T-------------------EEEEEEEBSSSSEEEEEE--TTT-STTTB-----------------------------TS
T ss_pred c-------------------ceEEeeccccceecccccCCccccchhhc-----------------------------Ce
Confidence 0 00000 001111211122233343332 22
Q ss_pred CceeecCCCCCeeEEEEcCCCCEEEEE----ecCCeEEEEECCCCceEEEEeCC-CCCeEEEEEecCCCcEEEEEeCCC-
Q 000268 532 PRQRILPTPRGVNMIVWSLDNRFVLAA----IMDCRICVWNAADGSLVHSLTGH-TESTYVLDVHPFNPRIAMSAGYDG- 605 (1757)
Q Consensus 532 ~~~~l~~h~~~VtsVafSPDG~~LaSG----s~DG~I~IWDl~tgkll~~L~gH-~~~VtsLafSPdd~~lLaSgs~DG- 605 (1757)
.+..+.....+ ..+..+|++++|.+. ...+.|.|+|..+.+.+..+... ...+..+.|++++..+.+|.-..+
T Consensus 261 vv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~ 339 (369)
T PF02239_consen 261 VVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNG 339 (369)
T ss_dssp EEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TT
T ss_pred EEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCC
Confidence 23334444444 677889999999998 45588999999999888887532 235889999996666666655444
Q ss_pred cEEEEeCCCCceEEEEe
Q 000268 606 KTIVWDIWEGIPIRIYE 622 (1757)
Q Consensus 606 ~IrIWDl~tg~~l~~l~ 622 (1757)
.|.|||..+.+.+..+.
T Consensus 340 ~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 340 AIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEEEETTTTEEEEEEE
T ss_pred EEEEEECCCcEEEEEEE
Confidence 89999999999998886
|
... |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-12 Score=163.35 Aligned_cols=233 Identities=17% Similarity=0.145 Sum_probs=160.3
Q ss_pred CceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC---ceEEEEECCCCCc--eEEecCCCCceEEEEecCC
Q 000268 264 DRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND---CIIRVWRLPDGLP--ISVLRGHTAAVTAIAFSPR 338 (1757)
Q Consensus 264 DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~D---GtIrVWDl~tg~~--l~~l~gH~~~VtsLafSPd 338 (1757)
+..|.|||..... .+.+..|...|.+++|+|||+.||.++.+ ..|++||+.++.. +..+.+| ...++|+||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence 5799999986544 56677788899999999999999887654 4799999988854 3333333 446899999
Q ss_pred CCceEEEEEE-eCCCcEEEE--ecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEee-CCc
Q 000268 339 PGSVYQLLSS-SDDGTCRIW--DARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS-SDT 414 (1757)
Q Consensus 339 g~~~~~LaSg-s~DGtIrIW--Dl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs-~DG 414 (1757)
+. .|+.+ +.+|.+.|| |+.++.. ..+ ..+...+.+.+|+|||+.|+.++ .+|
T Consensus 259 G~---~La~~~~~~g~~~Iy~~d~~~~~~-~~l--------------------t~~~~~~~~~~wSpDG~~i~f~s~~~g 314 (429)
T PRK01742 259 GS---RLAFASSKDGVLNIYVMGANGGTP-SQL--------------------TSGAGNNTEPSWSPDGQSILFTSDRSG 314 (429)
T ss_pred CC---EEEEEEecCCcEEEEEEECCCCCe-Eee--------------------ccCCCCcCCEEECCCCCEEEEEECCCC
Confidence 97 66655 468876666 5544432 111 11233467889999999877655 578
Q ss_pred eEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEE
Q 000268 415 LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAI 494 (1757)
Q Consensus 415 ~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~ 494 (1757)
...||++.... .....+ .+.. ..+.|+|++ +.|+.++.++ +.
T Consensus 315 ~~~I~~~~~~~--------~~~~~l-~~~~--~~~~~SpDG--------------------------~~ia~~~~~~-i~ 356 (429)
T PRK01742 315 SPQVYRMSASG--------GGASLV-GGRG--YSAQISADG--------------------------KTLVMINGDN-VV 356 (429)
T ss_pred CceEEEEECCC--------CCeEEe-cCCC--CCccCCCCC--------------------------CEEEEEcCCC-EE
Confidence 88888874311 111122 2332 356788886 5676666655 55
Q ss_pred EEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEEC--CCC
Q 000268 495 IWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA--ADG 572 (1757)
Q Consensus 495 IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl--~tg 572 (1757)
+||+.++... .+... .....+.|+|||++|++++.++.+.+|.+ .+|
T Consensus 357 ~~Dl~~g~~~------------------------------~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G 405 (429)
T PRK01742 357 KQDLTSGSTE------------------------------VLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADG 405 (429)
T ss_pred EEECCCCCeE------------------------------EecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 5888764310 00000 11235689999999999999998888875 468
Q ss_pred ceEEEEeCCCCCeEEEEEecC
Q 000268 573 SLVHSLTGHTESTYVLDVHPF 593 (1757)
Q Consensus 573 kll~~L~gH~~~VtsLafSPd 593 (1757)
+.++.+.+|.+.+..++|+|.
T Consensus 406 ~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 406 RFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CceEEccCCCCCCCCcccCCC
Confidence 899999999998999999983
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.8e-12 Score=161.92 Aligned_cols=280 Identities=16% Similarity=0.232 Sum_probs=190.6
Q ss_pred EECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCC
Q 000268 312 WRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQ 391 (1757)
Q Consensus 312 WDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~ 391 (1757)
|++ .|..++.+..|...|..++.++.... +|++|+.||+|++|+.+.-..-.. ...........
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s--~FvsgS~DGtVKvW~~~k~~~~~~-------------s~rS~ltys~~ 1097 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTS--LFVSGSDDGTVKVWNLRKLEGEGG-------------SARSELTYSPE 1097 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCc--eEEEecCCceEEEeeehhhhcCcc-------------eeeeeEEEecc
Confidence 664 58889999999999999999887632 899999999999999874321100 00111112235
Q ss_pred CcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCC-CCceEE-EEccCccccccccccCCCCC
Q 000268 392 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE-NDVNYV-QFSGCAVASRFSLADSSKED 469 (1757)
Q Consensus 392 ~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~-~~V~sL-afSpdg~~s~~~~~~~~~~~ 469 (1757)
...+.++.+.+.|..+|+++.||.|++.++.-.+.. ............+. +.|..+ +|....
T Consensus 1098 ~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~--~~~~~~~ri~n~~~~g~vv~m~a~~~~~-------------- 1161 (1431)
T KOG1240|consen 1098 GSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVS--KRVATQVRIPNLKKDGVVVSMHAFTAIV-------------- 1161 (1431)
T ss_pred CCceEEEEeccCCCeEEEEcCCCeEEEEEccccccc--cceeeeeecccccCCCceEEeecccccc--------------
Confidence 667899999999999999999999999998542110 00011111111111 112211 121110
Q ss_pred CCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEc
Q 000268 470 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWS 549 (1757)
Q Consensus 470 ~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafS 549 (1757)
. ...++.+..-+.|..||+++.. ..|.. ......+.|++++.+
T Consensus 1162 ---------~-S~~lvy~T~~~~iv~~D~r~~~-----~~w~l----------------------k~~~~hG~vTSi~id 1204 (1431)
T KOG1240|consen 1162 ---------Q-SHVLVYATDLSRIVSWDTRMRH-----DAWRL----------------------KNQLRHGLVTSIVID 1204 (1431)
T ss_pred ---------c-ceeEEEEEeccceEEecchhhh-----hHHhh----------------------hcCccccceeEEEec
Confidence 0 1278888889999999998633 12221 122345679999999
Q ss_pred CCCCEEEEEecCCeEEEEECCCCceEEEEe-CCCCCeEEEEEecCCC--cEEEEEe--CCCcEEEEeCCCCceEEEEeec
Q 000268 550 LDNRFVLAAIMDCRICVWNAADGSLVHSLT-GHTESTYVLDVHPFNP--RIAMSAG--YDGKTIVWDIWEGIPIRIYEIS 624 (1757)
Q Consensus 550 PDG~~LaSGs~DG~I~IWDl~tgkll~~L~-gH~~~VtsLafSPdd~--~lLaSgs--~DG~IrIWDl~tg~~l~~l~~~ 624 (1757)
|.+.++++|+..|.+.+||++-+.++..+. ++...|..|..+|.-+ ...++++ ..+.|.+|++.+|.+..++...
T Consensus 1205 p~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1205 PWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred CCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcC
Confidence 999999999999999999999988888765 4557788888888655 4555554 4778999999999887776543
Q ss_pred Cc-------------------ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 000268 625 RF-------------------RLVDGKFSPDGASIILSDDVGQLYILNTGQGESQ 660 (1757)
Q Consensus 625 ~~-------------------~VtslafSPDGk~LAsgs~DG~I~IWdl~tGe~~ 660 (1757)
.. ....+.+..-+.++.+|+.|+.|+.||....+..
T Consensus 1285 ~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1285 DGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred CCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 11 1122345555678889999999999998775543
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.5e-12 Score=143.63 Aligned_cols=256 Identities=18% Similarity=0.220 Sum_probs=186.8
Q ss_pred CCCCEEEEEECCCCCEEEEEcCCceEEEEecCCC---eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCC-
Q 000268 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA---YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG- 317 (1757)
Q Consensus 242 H~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg---~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg- 317 (1757)
-..+|+|.||++|+..+|++.....|.||..... +..+++..|...|+.|+|+|..+.|++|+.|..-+||....+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 4578999999999999999999999999988654 578889999999999999999999999999999999998433
Q ss_pred --CceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcce
Q 000268 318 --LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 395 (1757)
Q Consensus 318 --~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V 395 (1757)
++...+..+...+++|.|+|..+ .|++|+.-..|.||-++...-- +.......+....|
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~en---kFAVgSgar~isVcy~E~ENdW----------------WVsKhikkPirStv 149 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKEN---KFAVGSGARLISVCYYEQENDW----------------WVSKHIKKPIRSTV 149 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCc---eEEeccCccEEEEEEEecccce----------------ehhhhhCCccccce
Confidence 56667777999999999999987 8999999999999877643211 01112234567779
Q ss_pred EEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCccc
Q 000268 396 FCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475 (1757)
Q Consensus 396 ~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~ 475 (1757)
+++.|+|++-+|++|+.|+..+||..- +..+.... .|.
T Consensus 150 ~sldWhpnnVLlaaGs~D~k~rVfSay-------------IK~Vdekp--------ap~--------------------- 187 (361)
T KOG1523|consen 150 TSLDWHPNNVLLAAGSTDGKCRVFSAY-------------IKGVDEKP--------APT--------------------- 187 (361)
T ss_pred eeeeccCCcceecccccCcceeEEEEe-------------eeccccCC--------CCC---------------------
Confidence 999999999999999999999999762 11110000 000
Q ss_pred ccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEE
Q 000268 476 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFV 555 (1757)
Q Consensus 476 ~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~L 555 (1757)
-|+-+ .+.+..+.......+.|..+.|+|+|..|
T Consensus 188 -------------------pWgsk---------------------------~PFG~lm~E~~~~ggwvh~v~fs~sG~~l 221 (361)
T KOG1523|consen 188 -------------------PWGSK---------------------------MPFGQLMSEASSSGGWVHGVLFSPSGNRL 221 (361)
T ss_pred -------------------CCccC---------------------------CcHHHHHHhhccCCCceeeeEeCCCCCEe
Confidence 01100 01112222222455679999999999999
Q ss_pred EEEecCCeEEEEECCCCc-eEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCc
Q 000268 556 LAAIMDCRICVWNAADGS-LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGK 606 (1757)
Q Consensus 556 aSGs~DG~I~IWDl~tgk-ll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~ 606 (1757)
+-.+.|..+.+-|..... .+..+....-+..++.|-. ...++.+++|..
T Consensus 222 awv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~is--e~~vv~ag~~c~ 271 (361)
T KOG1523|consen 222 AWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWIS--ENSVVAAGYDCG 271 (361)
T ss_pred eEecCCCceEEeecCCCchhccchhhccCCceeeEeec--CCceeecCCCCC
Confidence 999999999999987664 3333333335566666654 234455666643
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.4e-12 Score=161.91 Aligned_cols=235 Identities=15% Similarity=0.079 Sum_probs=163.1
Q ss_pred CceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCC---CcEEEEecCCCCccceeecCCCCccccCCCC
Q 000268 306 DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD---GTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 382 (1757)
Q Consensus 306 DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~D---GtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~ 382 (1757)
+..|.+||..... ...+..|...+.+++|+|+++ .|+.++.+ ..|.+||+.++.......
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~---~la~~s~~~~~~~i~i~dl~tg~~~~l~~------------- 245 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGS---KLAYVSFENKKSQLVVHDLRSGARKVVAS------------- 245 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCC---EEEEEEecCCCcEEEEEeCCCCceEEEec-------------
Confidence 4789999985444 566777888999999999997 67666543 469999998775322110
Q ss_pred CCCCCCCCCCcceEEEEECCCCCEEEEee-CCceEEEe--cCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccc
Q 000268 383 APSSSAGPQSHQIFCCAFNANGTVFVTGS-SDTLARVW--NACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASR 459 (1757)
Q Consensus 383 ~~~~~~~~~~~~V~slafSpdG~~LasGs-~DG~IrVW--Dl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~ 459 (1757)
..+...+++|+|||+.|+++. .+|.+.|| |+.++ ....+..+...+..+.|+|++
T Consensus 246 --------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~----------~~~~lt~~~~~~~~~~wSpDG---- 303 (429)
T PRK01742 246 --------FRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGG----------TPSQLTSGAGNNTEPSWSPDG---- 303 (429)
T ss_pred --------CCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCC----------CeEeeccCCCCcCCEEECCCC----
Confidence 011133579999999888765 57766665 54321 234556677778899999987
Q ss_pred cccccCCCCCCCCcccccccCCCcEE-EEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecC
Q 000268 460 FSLADSSKEDSTPKFKNSWFCHDNIV-TCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP 538 (1757)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~Lv-SgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 538 (1757)
..|+ ++..+|...||++.... .....+ .
T Consensus 304 ----------------------~~i~f~s~~~g~~~I~~~~~~~----------------------------~~~~~l-~ 332 (429)
T PRK01742 304 ----------------------QSILFTSDRSGSPQVYRMSASG----------------------------GGASLV-G 332 (429)
T ss_pred ----------------------CEEEEEECCCCCceEEEEECCC----------------------------CCeEEe-c
Confidence 4444 45567888999775311 001111 2
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC--CCCc
Q 000268 539 TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI--WEGI 616 (1757)
Q Consensus 539 h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl--~tg~ 616 (1757)
+.. ..++|+|||++|++++.++ +.+||+.+++.......+ ....+.|+| ++++|+.++.++.+.+|.+ .+|.
T Consensus 333 ~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sP-dG~~i~~~s~~g~~~~l~~~~~~G~ 406 (429)
T PRK01742 333 GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISP-NGIMIIYSSTQGLGKVLQLVSADGR 406 (429)
T ss_pred CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECC-CCCEEEEEEcCCCceEEEEEECCCC
Confidence 222 3468999999999887765 666999988765433332 245688999 6777888888998888876 3688
Q ss_pred eEEEEeecCcceEEEEEcCC
Q 000268 617 PIRIYEISRFRLVDGKFSPD 636 (1757)
Q Consensus 617 ~l~~l~~~~~~VtslafSPD 636 (1757)
.++.+..+.+.+..++|||-
T Consensus 407 ~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 407 FKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ceEEccCCCCCCCCcccCCC
Confidence 88888877778888999984
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.1e-13 Score=156.39 Aligned_cols=203 Identities=19% Similarity=0.233 Sum_probs=153.3
Q ss_pred EEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecC-
Q 000268 247 YCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRG- 325 (1757)
Q Consensus 247 ~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~g- 325 (1757)
.+++|+.+|..|++|+.||+++||++.+...+.....|.+.|.+|.|+|||++|++.+.| ..+||++.+|.+++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 789999999999999999999999999888888888999999999999999999999999 899999999987776652
Q ss_pred -CCCceEEEEecCCCCc--eEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECC
Q 000268 326 -HTAAVTAIAFSPRPGS--VYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA 402 (1757)
Q Consensus 326 -H~~~VtsLafSPdg~~--~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSp 402 (1757)
.......+.|+.++.. .+.++....-+.|+.|++..-..-..+ ...........|.++++++
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l---------------~~~~~~~~~~siSsl~VS~ 291 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFL---------------RLRKKIKRFKSISSLAVSD 291 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccccc---------------chhhhhhccCcceeEEEcC
Confidence 3345667888877622 123333444567777776533211000 0011112334699999999
Q ss_pred CCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCC
Q 000268 403 NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHD 482 (1757)
Q Consensus 403 dG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1757)
+|+++|.|+.||.|.|++..+-+ .....-..|...|+.+.|+|+. .
T Consensus 292 dGkf~AlGT~dGsVai~~~~~lq--------~~~~vk~aH~~~VT~ltF~Pds--------------------------r 337 (398)
T KOG0771|consen 292 DGKFLALGTMDGSVAIYDAKSLQ--------RLQYVKEAHLGFVTGLTFSPDS--------------------------R 337 (398)
T ss_pred CCcEEEEeccCCcEEEEEeceee--------eeEeehhhheeeeeeEEEcCCc--------------------------C
Confidence 99999999999999999986421 1233446799999999999986 5
Q ss_pred cEEEEcCCCeEEEEeCC
Q 000268 483 NIVTCSRDGSAIIWIPR 499 (1757)
Q Consensus 483 ~LvSgS~DGtI~IWDl~ 499 (1757)
.+++.+.+..+.|..+.
T Consensus 338 ~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 338 YLASVSSDNEAAVTKLA 354 (398)
T ss_pred cccccccCCceeEEEEe
Confidence 66667777777766554
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.4e-13 Score=157.17 Aligned_cols=280 Identities=18% Similarity=0.276 Sum_probs=209.4
Q ss_pred CEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEec
Q 000268 245 AVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR 324 (1757)
Q Consensus 245 ~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~ 324 (1757)
.=+.+.|+.+|+.|+.|+.-|.|-.+|+.++.+...+. -...|.++.|-.+.+++|++ ....+.||| ..|..+..++
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElHClk 207 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELHCLK 207 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEec-CCCcEEeehh
Confidence 34678899999999999999999999999999998887 35679999999998888887 456899999 5788888888
Q ss_pred CCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCC
Q 000268 325 GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG 404 (1757)
Q Consensus 325 gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG 404 (1757)
.| ..|..+.|.|.. ++|++++..|.+..-|+.+|+++..+.. ..+.+..++-+|-.
T Consensus 208 ~~-~~v~rLeFLPyH---fLL~~~~~~G~L~Y~DVS~GklVa~~~t--------------------~~G~~~vm~qNP~N 263 (545)
T KOG1272|consen 208 RH-IRVARLEFLPYH---FLLVAASEAGFLKYQDVSTGKLVASIRT--------------------GAGRTDVMKQNPYN 263 (545)
T ss_pred hc-Cchhhhcccchh---heeeecccCCceEEEeechhhhhHHHHc--------------------cCCccchhhcCCcc
Confidence 65 668999999975 4888999999999999999987765532 22334444555544
Q ss_pred CEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcE
Q 000268 405 TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI 484 (1757)
Q Consensus 405 ~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~L 484 (1757)
..+-+|...|+|.+|..
T Consensus 264 aVih~GhsnGtVSlWSP--------------------------------------------------------------- 280 (545)
T KOG1272|consen 264 AVIHLGHSNGTVSLWSP--------------------------------------------------------------- 280 (545)
T ss_pred ceEEEcCCCceEEecCC---------------------------------------------------------------
Confidence 45555555555555543
Q ss_pred EEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeE
Q 000268 485 VTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRI 564 (1757)
Q Consensus 485 vSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I 564 (1757)
.+ ..++..+..|.++|.+|++.++|+|+||++.|..|
T Consensus 281 --------------~s-----------------------------kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~ 317 (545)
T KOG1272|consen 281 --------------NS-----------------------------KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKV 317 (545)
T ss_pred --------------CC-----------------------------cchHHHHHhcCCCcceEEECCCCcEEeecccccce
Confidence 32 23444566788899999999999999999999999
Q ss_pred EEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe-CCCC--ceEEEEeec--CcceEEEEEcCCCCE
Q 000268 565 CVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD-IWEG--IPIRIYEIS--RFRLVDGKFSPDGAS 639 (1757)
Q Consensus 565 ~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWD-l~tg--~~l~~l~~~--~~~VtslafSPDGk~ 639 (1757)
+|||++....++++.. ......+++|. .+ + ++++....|.||. .-.+ ..-..+-.| .+.|..+.|.|-...
T Consensus 318 kIWDlR~~~ql~t~~t-p~~a~~ls~Sq-kg-l-LA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDv 393 (545)
T KOG1272|consen 318 KIWDLRNFYQLHTYRT-PHPASNLSLSQ-KG-L-LALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDV 393 (545)
T ss_pred eEeeeccccccceeec-CCCcccccccc-cc-c-eeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHe
Confidence 9999999887777665 34467788875 33 3 3455666799994 3222 222222222 347999999999999
Q ss_pred EEEEeCCCeEEEEECCCCcccc
Q 000268 640 IILSDDVGQLYILNTGQGESQK 661 (1757)
Q Consensus 640 LAsgs~DG~I~IWdl~tGe~~~ 661 (1757)
|-+|-..|--.|.=.++|++-.
T Consensus 394 LGIGH~~G~tsilVPGsGePN~ 415 (545)
T KOG1272|consen 394 LGIGHAGGITSILVPGSGEPNY 415 (545)
T ss_pred eeccccCCceeEeccCCCCCCc
Confidence 9999888877777778877643
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.9e-12 Score=151.82 Aligned_cols=267 Identities=14% Similarity=0.198 Sum_probs=181.2
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEe-cC----CCCceEEEEEEeCCCcEEEE
Q 000268 283 GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAF-SP----RPGSVYQLLSSSDDGTCRIW 357 (1757)
Q Consensus 283 gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLaf-SP----dg~~~~~LaSgs~DGtIrIW 357 (1757)
.|...|.|+.|+.+...+.+++.+..+.-|++.+. .+..+.-....|...-+ -+ .+.....|+.++.||.+.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~-s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRD-SVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccch-hhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 46777889999987776666654444444454332 22222111111111111 11 11222478889999999887
Q ss_pred ecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCccee
Q 000268 358 DARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEID 437 (1757)
Q Consensus 358 Dl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~ 437 (1757)
+-. ++.. .....|.+.+.|-.|+|||.-|++++.||.|++|.-. +..-.
T Consensus 91 ~k~-~rVE--------------------~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs----------GMLRS 139 (737)
T KOG1524|consen 91 NKS-ARVE--------------------RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS----------GMLRS 139 (737)
T ss_pred ccc-chhh--------------------hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc----------chHHH
Confidence 632 2211 1234588889999999999999999999999999863 22334
Q ss_pred eecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCccccccccccccc
Q 000268 438 VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLK 517 (1757)
Q Consensus 438 ~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~ 517 (1757)
++......|.|++|.|+. ...+.+.+ |.+.|=-+.
T Consensus 140 tl~Q~~~~v~c~~W~p~S-------------------------~~vl~c~g--~h~~IKpL~------------------ 174 (737)
T KOG1524|consen 140 TVVQNEESIRCARWAPNS-------------------------NSIVFCQG--GHISIKPLA------------------ 174 (737)
T ss_pred HHhhcCceeEEEEECCCC-------------------------CceEEecC--CeEEEeecc------------------
Confidence 556667889999999986 23344333 334432222
Q ss_pred CCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcE
Q 000268 518 VPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRI 597 (1757)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~l 597 (1757)
......+...|.+-|.++.|++....|++|+.|-..+|||. -|..+..-..|.-+|++++|.| + ..
T Consensus 175 -----------~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~np-d-~~ 240 (737)
T KOG1524|consen 175 -----------ANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNP-E-KD 240 (737)
T ss_pred -----------cccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeecc-c-cc
Confidence 12234455678999999999999999999999999999997 5777777788999999999999 4 44
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEe-ecCcceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000268 598 AMSAGYDGKTIVWDIWEGIPIRIYE-ISRFRLVDGKFSPDGASIILSDDVGQLYILN 653 (1757)
Q Consensus 598 LaSgs~DG~IrIWDl~tg~~l~~l~-~~~~~VtslafSPDGk~LAsgs~DG~I~IWd 653 (1757)
++.++.. +++ +. ...+.|..++||+||..+++|+..|.+.+--
T Consensus 241 ~~v~S~n-t~R------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 241 YLLWSYN-TAR------------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred eeeeeee-eee------------ecCCCccceEEEEEcCCCceeeccccCceEEEee
Confidence 4455432 333 22 2356799999999999999999999876643
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-12 Score=152.39 Aligned_cols=201 Identities=19% Similarity=0.279 Sum_probs=149.4
Q ss_pred EEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCcccee
Q 000268 289 TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRI 368 (1757)
Q Consensus 289 tsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i 368 (1757)
.+++|+.+|..|++|+.||++|||++.+...+.....|.+.|.++.|+||++ .|++.+.| ..+||++.++..+...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk---~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGK---FLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCc---EEEEecCC-ceEEEEeccCchhhhc
Confidence 7899999999999999999999999999988888899999999999999998 89999999 8999999999655543
Q ss_pred ecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCC---C--EEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCC
Q 000268 369 YIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG---T--VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE 443 (1757)
Q Consensus 369 ~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG---~--~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~ 443 (1757)
.- ......+..|.|+.++ . +++.....+.|+.|++
T Consensus 224 t~------------------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~---------------------- 263 (398)
T KOG0771|consen 224 TP------------------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDI---------------------- 263 (398)
T ss_pred CC------------------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEe----------------------
Confidence 10 1223345566676655 1 1111112223333322
Q ss_pred CCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCC
Q 000268 444 NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPM 523 (1757)
Q Consensus 444 ~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~ 523 (1757)
.+|+-..
T Consensus 264 --------------------------------------------------~~w~~~~----------------------- 270 (398)
T KOG0771|consen 264 --------------------------------------------------SLWSGSN----------------------- 270 (398)
T ss_pred --------------------------------------------------eeecccc-----------------------
Confidence 1221110
Q ss_pred CCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEE-eCCCCCeEEEEEecCCCcEEEEEe
Q 000268 524 PPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL-TGHTESTYVLDVHPFNPRIAMSAG 602 (1757)
Q Consensus 524 ~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L-~gH~~~VtsLafSPdd~~lLaSgs 602 (1757)
..+..........|++++.|.||++++.|+.||.|.|+++.+.+.++.. +.|...|+.|.|+| +.+.+++.+
T Consensus 271 ------~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~P-dsr~~~svS 343 (398)
T KOG0771|consen 271 ------FLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP-DSRYLASVS 343 (398)
T ss_pred ------ccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcC-CcCcccccc
Confidence 0001111223346899999999999999999999999999998887755 58999999999999 778888888
Q ss_pred CCCcEEEEeCC
Q 000268 603 YDGKTIVWDIW 613 (1757)
Q Consensus 603 ~DG~IrIWDl~ 613 (1757)
.|..+.|..+.
T Consensus 344 s~~~~~v~~l~ 354 (398)
T KOG0771|consen 344 SDNEAAVTKLA 354 (398)
T ss_pred cCCceeEEEEe
Confidence 89888887764
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.43 E-value=5e-11 Score=143.68 Aligned_cols=321 Identities=15% Similarity=0.190 Sum_probs=208.3
Q ss_pred CCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE-----eC-----CceEEEEE
Q 000268 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASA-----SN-----DCIIRVWR 313 (1757)
Q Consensus 244 ~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASg-----S~-----DGtIrVWD 313 (1757)
..++..++|++|+++|.+. +..|+|++..++..+.+...- .++++.|+|.|.+|.+- .. .-.+.+|+
T Consensus 35 ~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ 111 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN 111 (566)
T ss_pred CcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence 3477888999999888865 568999999988655444422 89999999999988762 11 24578999
Q ss_pred CCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCc
Q 000268 314 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 393 (1757)
Q Consensus 314 l~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~ 393 (1757)
++++.....+......-+++.|+.|.. |++--..+.|.+|++...+.... .-+..
T Consensus 112 vet~~~~s~~q~k~Q~~W~~qfs~dEs----l~arlv~nev~f~~~~~f~~~~~---------------------kl~~~ 166 (566)
T KOG2315|consen 112 VETGVQRSQIQKKMQNGWVPQFSIDES----LAARLVSNEVQFYDLGSFKTIQH---------------------KLSVS 166 (566)
T ss_pred eccceehhheehhhhcCcccccccchh----hhhhhhcceEEEEecCCccceee---------------------eeecc
Confidence 999765555543333337899999974 44444456799999876332211 12455
Q ss_pred ceEEEEECCCC--CEEEE-----eeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCC
Q 000268 394 QIFCCAFNANG--TVFVT-----GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSS 466 (1757)
Q Consensus 394 ~V~slafSpdG--~~Las-----Gs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~ 466 (1757)
.|..+.+||.+ ..+|+ ++.-+.|+||...-.. ....+..-.-....-..+.|++.|.
T Consensus 167 ~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~------~~~~~a~ksFFkadkvqm~WN~~gt---------- 230 (566)
T KOG2315|consen 167 GITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG------QHQPVANKSFFKADKVQMKWNKLGT---------- 230 (566)
T ss_pred ceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc------ccchhhhccccccceeEEEeccCCc----------
Confidence 68888888864 34443 3556689999873111 1111111111122223455555442
Q ss_pred CCCCCCcccccccCCCcEEEEc--CCC---------eEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCcee
Q 000268 467 KEDSTPKFKNSWFCHDNIVTCS--RDG---------SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR 535 (1757)
Q Consensus 467 ~~~~~~~~~~~~~~~~~LvSgS--~DG---------tI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~ 535 (1757)
.+|+.++ -|. ++.+.++. +.....
T Consensus 231 ---------------~LLvLastdVDktn~SYYGEq~Lyll~t~------------------------------g~s~~V 265 (566)
T KOG2315|consen 231 ---------------ALLVLASTDVDKTNASYYGEQTLYLLATQ------------------------------GESVSV 265 (566)
T ss_pred ---------------eEEEEEEEeecCCCccccccceEEEEEec------------------------------CceEEE
Confidence 1222222 122 23333222 112222
Q ss_pred ecCCCCCeeEEEEcCCCCEEEE--EecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeC---CCcEEEE
Q 000268 536 ILPTPRGVNMIVWSLDNRFVLA--AIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGY---DGKTIVW 610 (1757)
Q Consensus 536 l~~h~~~VtsVafSPDG~~LaS--Gs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~---DG~IrIW 610 (1757)
-....++|.+++|+|+|+-+++ |-+-..+.|||+ .+.++..|. .++-+++-|+| .+++|+.+|. -|.|-||
T Consensus 266 ~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnl-r~~~v~df~--egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvw 341 (566)
T KOG2315|consen 266 PLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNL-RGKPVFDFP--EGPRNTAFFNP-HGNIILLAGFGNLPGDMEVW 341 (566)
T ss_pred ecCCCCCceEEEECCCCCEEEEEEecccceEEEEcC-CCCEeEeCC--CCCccceEECC-CCCEEEEeecCCCCCceEEE
Confidence 2345688999999999986655 677889999998 467776654 56678899999 5566666664 4789999
Q ss_pred eCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeC------CCeEEEEECCCCccc
Q 000268 611 DIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDD------VGQLYILNTGQGESQ 660 (1757)
Q Consensus 611 Dl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~------DG~I~IWdl~tGe~~ 660 (1757)
|+.+.+++..+... .-+-+.|+|||.++++++. |..++||+. +|..+
T Consensus 342 Dv~n~K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l 394 (566)
T KOG2315|consen 342 DVPNRKLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLL 394 (566)
T ss_pred eccchhhccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCcee
Confidence 99999999888743 3445799999999998743 788999997 44443
|
|
| >cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.4e-13 Score=136.47 Aligned_cols=73 Identities=19% Similarity=0.294 Sum_probs=69.2
Q ss_pred cCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHhCCC
Q 000268 1676 QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSLK 1748 (1757)
Q Consensus 1676 ~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~~~s~i~~~a~~l~~~~~~~l~~~~ 1748 (1757)
..|+|+.+|+.||||+||++||+++.|+++++|..||++|++||.+||++++.++.+|+.|-+.....|..++
T Consensus 35 ~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~~s~~~~~A~~l~~d~~~el~Ei~ 107 (109)
T cd05492 35 KLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGADSEQYDAARWLYRDTCHDLRELR 107 (109)
T ss_pred cCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999999999999999999999999999999999999999988888777654
|
ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=8e-11 Score=135.96 Aligned_cols=316 Identities=14% Similarity=0.154 Sum_probs=208.5
Q ss_pred CCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC--ceEEEEECCCCCce
Q 000268 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND--CIIRVWRLPDGLPI 320 (1757)
Q Consensus 243 ~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~D--GtIrVWDl~tg~~l 320 (1757)
...|..+.|..+...|..|+.|| -+++.................|.-+-|+. .+||..+.+ ..+++.++..+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceE
Confidence 45677888999999999999998 58888765443222222344566667764 466665554 45899998888777
Q ss_pred EEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEE
Q 000268 321 SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 400 (1757)
Q Consensus 321 ~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slaf 400 (1757)
..+. ....|.+|.+..+ .|+++-.+. |.|||+++.+++.++.. ..++...+.++++
T Consensus 82 Ce~~-fpt~IL~VrmNr~-----RLvV~Lee~-IyIydI~~MklLhTI~t-----------------~~~n~~gl~AlS~ 137 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMNRK-----RLVVCLEES-IYIYDIKDMKLLHTIET-----------------TPPNPKGLCALSP 137 (391)
T ss_pred EEEe-cCCceEEEEEccc-----eEEEEEccc-EEEEecccceeehhhhc-----------------cCCCccceEeecc
Confidence 6665 4578899999875 466555544 99999999998877743 1234455777777
Q ss_pred CCCCCEEEEee--CCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccc
Q 000268 401 NANGTVFVTGS--SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478 (1757)
Q Consensus 401 SpdG~~LasGs--~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~ 478 (1757)
+..+.++|.-+ ..|.|.|||+.+ .+.+..+..|.+.+-+++|+++|
T Consensus 138 n~~n~ylAyp~s~t~GdV~l~d~~n---------l~~v~~I~aH~~~lAalafs~~G----------------------- 185 (391)
T KOG2110|consen 138 NNANCYLAYPGSTTSGDVVLFDTIN---------LQPVNTINAHKGPLAALAFSPDG----------------------- 185 (391)
T ss_pred CCCCceEEecCCCCCceEEEEEccc---------ceeeeEEEecCCceeEEEECCCC-----------------------
Confidence 77778888644 368999999965 45677888999999999999998
Q ss_pred cCCCcEEEEcCCCe-EEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEE
Q 000268 479 FCHDNIVTCSRDGS-AIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA 557 (1757)
Q Consensus 479 ~~~~~LvSgS~DGt-I~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaS 557 (1757)
.+|+|+|..|+ |+|+.+.+++....+.+ + .....|.+++|+|++++|++
T Consensus 186 ---~llATASeKGTVIRVf~v~~G~kl~eFRR--------------------G-------~~~~~IySL~Fs~ds~~L~~ 235 (391)
T KOG2110|consen 186 ---TLLATASEKGTVIRVFSVPEGQKLYEFRR--------------------G-------TYPVSIYSLSFSPDSQFLAA 235 (391)
T ss_pred ---CEEEEeccCceEEEEEEcCCccEeeeeeC--------------------C-------ceeeEEEEEEECCCCCeEEE
Confidence 79999999998 57898876542211100 0 01345889999999999999
Q ss_pred EecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEE--EEEe-CCCcEEEEeCCCCceEEEEeecCc---ceEEE
Q 000268 558 AIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIA--MSAG-YDGKTIVWDIWEGIPIRIYEISRF---RLVDG 631 (1757)
Q Consensus 558 Gs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lL--aSgs-~DG~IrIWDl~tg~~l~~l~~~~~---~Vtsl 631 (1757)
.+..++|+||.+.... ......+-....| .+.+. +++- -.+.-.+|+... .......... .+..+
T Consensus 236 sS~TeTVHiFKL~~~~----~~~~~~p~~~~~~---~~~~sk~~~sylps~V~~~~~~~R--~FAt~~l~~s~~~~~~~l 306 (391)
T KOG2110|consen 236 SSNTETVHIFKLEKVS----NNPPESPTAGTSW---FGKVSKAATSYLPSQVSSVLDQSR--KFATAKLPESGRKNICSL 306 (391)
T ss_pred ecCCCeEEEEEecccc----cCCCCCCCCCCcc---cchhhhhhhhhcchhhhhhhhhcc--ceeEEEccCCCccceEEe
Confidence 9999999999986543 1111100000000 00000 0000 011223355432 2233322222 33333
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCC
Q 000268 632 KFSPDGASIILSDDVGQLYILNTGQ 656 (1757)
Q Consensus 632 afSPDGk~LAsgs~DG~I~IWdl~t 656 (1757)
.=.+...++.+++.||.++.|.+..
T Consensus 307 ~~~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 307 SSIQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred eccCCCCEEEEEEcCCeEEEEEcCC
Confidence 3346889999999999999999854
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.3e-11 Score=136.78 Aligned_cols=240 Identities=13% Similarity=0.194 Sum_probs=168.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCC--cEEEEecCCC
Q 000268 285 EGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDG--TCRIWDARYS 362 (1757)
Q Consensus 285 ~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DG--tIrIWDl~tg 362 (1757)
...+..+.|+.+...|..|+.|| .+++....-............|.-+-|+.. ++|..+.+. .+++.++..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS-----LvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS-----LVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc-----eeEEEecCCCceEEEEEcccC
Confidence 34577778999999999999997 578877654332222223345666677764 455554443 4788888776
Q ss_pred CccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCC
Q 000268 363 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH 442 (1757)
Q Consensus 363 ~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH 442 (1757)
..+..+.. ...|.++.++.+ .|++.-.+ .|+|||+++.+ .+.++..
T Consensus 79 ~~ICe~~f---------------------pt~IL~VrmNr~--RLvV~Lee-~IyIydI~~Mk---------lLhTI~t- 124 (391)
T KOG2110|consen 79 TTICEIFF---------------------PTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMK---------LLHTIET- 124 (391)
T ss_pred ceEEEEec---------------------CCceEEEEEccc--eEEEEEcc-cEEEEecccce---------eehhhhc-
Confidence 66655543 334677777533 34444333 38888875421 1111110
Q ss_pred CCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCC
Q 000268 443 ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPP 522 (1757)
Q Consensus 443 ~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~ 522 (1757)
T Consensus 125 -------------------------------------------------------------------------------- 124 (391)
T KOG2110|consen 125 -------------------------------------------------------------------------------- 124 (391)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEE--EecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEE
Q 000268 523 MPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA--AIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMS 600 (1757)
Q Consensus 523 ~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaS--Gs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaS 600 (1757)
...+..++.++.++..+.+||. ....|.|.|||+.+-+.+..+..|.+.+-+|+|++ +|.+|||
T Consensus 125 -------------~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~-~G~llAT 190 (391)
T KOG2110|consen 125 -------------TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSP-DGTLLAT 190 (391)
T ss_pred -------------cCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECC-CCCEEEE
Confidence 0112233444445555556655 22368899999999999999999999999999999 8899999
Q ss_pred EeCCCc-EEEEeCCCCceEEEEeecCc--ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 000268 601 AGYDGK-TIVWDIWEGIPIRIYEISRF--RLVDGKFSPDGASIILSDDVGQLYILNTGQGE 658 (1757)
Q Consensus 601 gs~DG~-IrIWDl~tg~~l~~l~~~~~--~VtslafSPDGk~LAsgs~DG~I~IWdl~tGe 658 (1757)
|+..|+ |||+.+.+|+.+..|..+.. .|.+++|+||+++|++++..++|+||.++...
T Consensus 191 ASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 191 ASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred eccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 999997 58999999999999986654 57899999999999999999999999997654
|
|
| >PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins [] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.3e-13 Score=129.68 Aligned_cols=74 Identities=18% Similarity=0.323 Sum_probs=66.7
Q ss_pred cccccccccccccccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHH
Q 000268 1662 VQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKR 1735 (1757)
Q Consensus 1662 ~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~~~s~i~~~a~~ 1735 (1757)
+.....|..++.....|+|+++|+.||||++|++||++++|+++++|..||++|+.||..||++++.++++|++
T Consensus 11 ~~~~~~F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~~~~A~~ 84 (84)
T PF00439_consen 11 HPISSPFSKPVDPKEYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPIYKAAEK 84 (84)
T ss_dssp STTGGGGSSSTHTTTSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHH
T ss_pred CCCchhhcCCCChhhCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHHHHHhcC
Confidence 44666777777888899999999999999999999999999999999999999999999999999999999974
|
Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A .... |
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.2e-12 Score=148.83 Aligned_cols=186 Identities=19% Similarity=0.221 Sum_probs=137.1
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEe-cCCCCceEEEEecCCCCceEEEEEEeCCCcEEE
Q 000268 278 LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL-RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356 (1757)
Q Consensus 278 l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l-~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrI 356 (1757)
.+.|.||++.|.|++|+.+|.+|++|+.|-.+.|||.-.-+++..+ .||...|.++.|.|..++ .++++|..|..|++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnn-riv~sgAgDk~i~l 121 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNN-RIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCC-eEEEeccCcceEEE
Confidence 4567899999999999999999999999999999999877777766 589999999999997643 48999999999999
Q ss_pred EecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCC-CEEEEeeCCceEEEecCCCCCCCCCCC-CCc
Q 000268 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQ-PNH 434 (1757)
Q Consensus 357 WDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG-~~LasGs~DG~IrVWDl~t~~~~~s~~-~~~ 434 (1757)
+|+...+.-..- .....+......|...|..|+..|++ ..|.+++.||+|+-||++.+....... -..
T Consensus 122 fdl~~~~~~~~d----------~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~ 191 (758)
T KOG1310|consen 122 FDLDSSKEGGMD----------HGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPS 191 (758)
T ss_pred Eecccccccccc----------cCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccH
Confidence 999753311100 00111223345677888899999988 889999999999999998643211111 111
Q ss_pred ceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCC
Q 000268 435 EIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPR 499 (1757)
Q Consensus 435 ~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~ 499 (1757)
.+..+...--...++.++|.. +.+|++|+.|-.+++||.+
T Consensus 192 ~l~ny~~~lielk~ltisp~r-------------------------p~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 192 ILVNYNPQLIELKCLTISPSR-------------------------PYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred HHHHhchhhheeeeeeecCCC-------------------------CceEEecCCCchhhhhhhh
Confidence 111112222334566666653 4689999999999999965
|
|
| >cd04369 Bromodomain Bromodomain | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-12 Score=130.18 Aligned_cols=81 Identities=21% Similarity=0.388 Sum_probs=75.5
Q ss_pred ccccccccccccccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHH
Q 000268 1663 QDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTR 1742 (1757)
Q Consensus 1663 ~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~~~s~i~~~a~~l~~~~~~ 1742 (1757)
.....|..++.....|+|+.+|++||||.+|++||++++|.++++|..|+++|+.||..||++++.++++|..|...|..
T Consensus 18 ~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~~~~~~~~~a~~l~~~~~~ 97 (99)
T cd04369 18 DLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPGSPIYKDAKKLEKLFEK 97 (99)
T ss_pred cccHHHhcCCChhcCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 45567777777778999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred H
Q 000268 1743 T 1743 (1757)
Q Consensus 1743 ~ 1743 (1757)
.
T Consensus 98 ~ 98 (99)
T cd04369 98 L 98 (99)
T ss_pred h
Confidence 5
|
Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-10 Score=145.50 Aligned_cols=234 Identities=12% Similarity=0.020 Sum_probs=154.5
Q ss_pred ceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC---CceEEEEECCCCCceEEecCCCCceEEEEecCCCCc
Q 000268 265 RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN---DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS 341 (1757)
Q Consensus 265 GtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~---DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~ 341 (1757)
..|.+||...+. .+.+..+...+.+.+|+|||+.||..+. +..|.+|++.+|+... +....+.+..++|+||++
T Consensus 179 ~~l~~~d~dg~~-~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~- 255 (429)
T PRK03629 179 YELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGS- 255 (429)
T ss_pred eeEEEEcCCCCC-CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCC-
Confidence 479999987554 3445556778999999999999886542 4579999998886433 222334455789999997
Q ss_pred eEEEEE-EeCCC--cEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCC-ceEE
Q 000268 342 VYQLLS-SSDDG--TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD-TLAR 417 (1757)
Q Consensus 342 ~~~LaS-gs~DG--tIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~D-G~Ir 417 (1757)
.|+. .+.+| .|.+||+.++...... .....+...+|+|||+.|+..+.+ +...
T Consensus 256 --~La~~~~~~g~~~I~~~d~~tg~~~~lt---------------------~~~~~~~~~~wSPDG~~I~f~s~~~g~~~ 312 (429)
T PRK03629 256 --KLAFALSKTGSLNLYVMDLASGQIRQVT---------------------DGRSNNTEPTWFPDSQNLAYTSDQAGRPQ 312 (429)
T ss_pred --EEEEEEcCCCCcEEEEEECCCCCEEEcc---------------------CCCCCcCceEECCCCCEEEEEeCCCCCce
Confidence 4553 34455 4888999877532211 112235678999999988777654 4445
Q ss_pred Ee--cCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcC-C--Ce
Q 000268 418 VW--NACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR-D--GS 492 (1757)
Q Consensus 418 VW--Dl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~-D--Gt 492 (1757)
|| ++.++ ....+..+...+....|+|++ ..|+..+. + ..
T Consensus 313 Iy~~d~~~g----------~~~~lt~~~~~~~~~~~SpDG--------------------------~~Ia~~~~~~g~~~ 356 (429)
T PRK03629 313 VYKVNINGG----------APQRITWEGSQNQDADVSSDG--------------------------KFMVMVSSNGGQQH 356 (429)
T ss_pred EEEEECCCC----------CeEEeecCCCCccCEEECCCC--------------------------CEEEEEEccCCCce
Confidence 55 55332 122333334445678899987 45554433 3 35
Q ss_pred EEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCe---EEEEEC
Q 000268 493 AIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCR---ICVWNA 569 (1757)
Q Consensus 493 I~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~---I~IWDl 569 (1757)
|.+||+.++.. ..+.. ........|+|||++|+.++.++. +.++++
T Consensus 357 I~~~dl~~g~~------------------------------~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 357 IAKQDLATGGV------------------------------QVLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred EEEEECCCCCe------------------------------EEeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence 77888875321 01110 111235689999999999887764 677777
Q ss_pred CCCceEEEEeCCCCCeEEEEEec
Q 000268 570 ADGSLVHSLTGHTESTYVLDVHP 592 (1757)
Q Consensus 570 ~tgkll~~L~gH~~~VtsLafSP 592 (1757)
+|.....+.+|.+.+...+|+|
T Consensus 406 -~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 406 -DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred -CCCCeEECccCCCCcCCcccCC
Confidence 6777788888988999999998
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.4e-10 Score=140.64 Aligned_cols=234 Identities=15% Similarity=0.076 Sum_probs=151.6
Q ss_pred ceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEe---CCCcEEEEecCCCCccceeecCCCCccccCCCCC
Q 000268 307 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS---DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMA 383 (1757)
Q Consensus 307 GtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs---~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~ 383 (1757)
..|.+||...... ..+..+...+.+.+|+|||+ .|+..+ .+..|.+|++.+++......
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~---~la~~s~~~g~~~i~i~dl~~G~~~~l~~-------------- 240 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGS---KLAYVTFESGRSALVIQTLANGAVRQVAS-------------- 240 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCC---EEEEEEecCCCcEEEEEECCCCCeEEccC--------------
Confidence 3799999865544 44555677899999999997 555443 34579999998775322110
Q ss_pred CCCCCCCCCcceEEEEECCCCCEEEEe-eCCc--eEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccc
Q 000268 384 PSSSAGPQSHQIFCCAFNANGTVFVTG-SSDT--LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 460 (1757)
Q Consensus 384 ~~~~~~~~~~~V~slafSpdG~~LasG-s~DG--~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~ 460 (1757)
....+..++|+|||+.|+.. +.+| .|.+||+.++. +..+..+...+....|+|++
T Consensus 241 -------~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~----------~~~lt~~~~~~~~~~wSPDG----- 298 (429)
T PRK03629 241 -------FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----------IRQVTDGRSNNTEPTWFPDS----- 298 (429)
T ss_pred -------CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC----------EEEccCCCCCcCceEECCCC-----
Confidence 11123457899999988865 3344 58889986532 23344444567889999987
Q ss_pred ccccCCCCCCCCcccccccCCCcEEEEcC-CCeEEEE--eCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeec
Q 000268 461 SLADSSKEDSTPKFKNSWFCHDNIVTCSR-DGSAIIW--IPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL 537 (1757)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~LvSgS~-DGtI~IW--Dl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~ 537 (1757)
..|+..+. +|...|| ++.++. ...+.
T Consensus 299 ---------------------~~I~f~s~~~g~~~Iy~~d~~~g~------------------------------~~~lt 327 (429)
T PRK03629 299 ---------------------QNLAYTSDQAGRPQVYKVNINGGA------------------------------PQRIT 327 (429)
T ss_pred ---------------------CEEEEEeCCCCCceEEEEECCCCC------------------------------eEEee
Confidence 45655444 4555565 443211 11222
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecC---CeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCc---EEEEe
Q 000268 538 PTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGK---TIVWD 611 (1757)
Q Consensus 538 ~h~~~VtsVafSPDG~~LaSGs~D---G~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~---IrIWD 611 (1757)
........++|||||++|+..+.+ ..|++||+.+++.. .+... .......|+| ++++|+.++.++. +.+|+
T Consensus 328 ~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~Sp-DG~~i~~~s~~~~~~~l~~~~ 404 (429)
T PRK03629 328 WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAP-NGTMVIYSSSQGMGSVLNLVS 404 (429)
T ss_pred cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECC-CCCEEEEEEcCCCceEEEEEE
Confidence 223345578999999999886643 35899999888654 34322 2234678999 5666666666654 67778
Q ss_pred CCCCceEEEEeecCcceEEEEEcC
Q 000268 612 IWEGIPIRIYEISRFRLVDGKFSP 635 (1757)
Q Consensus 612 l~tg~~l~~l~~~~~~VtslafSP 635 (1757)
+ +|.....+..+.+.+...+|+|
T Consensus 405 ~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 405 T-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred C-CCCCeEECccCCCCcCCcccCC
Confidence 8 6776777776777888899987
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-10 Score=138.71 Aligned_cols=292 Identities=13% Similarity=0.125 Sum_probs=199.9
Q ss_pred cCCCCEEEEEECCCCCEE-EEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCc
Q 000268 241 GHRNAVYCAIFDRSGRYV-ITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLP 319 (1757)
Q Consensus 241 GH~~~V~~VaFSPDG~~L-ATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~ 319 (1757)
+|....+.|..+|||+|| |||..-..|++||+....+-..-.-....|.-.-++.|-..++.-..|.+|-+... -|..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-~G~h 127 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-YGRH 127 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhh-cCee
Confidence 477888999999999986 56777889999999876544433223445555556666666666677888776542 2221
Q ss_pred eEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEE
Q 000268 320 ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCA 399 (1757)
Q Consensus 320 l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sla 399 (1757)
... + -...-..++++.-.. -|++++....|.-+++..|+++..+.. ..+.+++|.
T Consensus 128 y~~-R-IP~~GRDm~y~~~sc---Dly~~gsg~evYRlNLEqGrfL~P~~~--------------------~~~~lN~v~ 182 (703)
T KOG2321|consen 128 YRT-R-IPKFGRDMKYHKPSC---DLYLVGSGSEVYRLNLEQGRFLNPFET--------------------DSGELNVVS 182 (703)
T ss_pred eee-e-cCcCCccccccCCCc---cEEEeecCcceEEEEcccccccccccc--------------------ccccceeee
Confidence 111 1 112223455544332 355555556788899999988766532 346689999
Q ss_pred ECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCccccccc
Q 000268 400 FNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWF 479 (1757)
Q Consensus 400 fSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~ 479 (1757)
.++-..+|++|+.+|.|..||.++... +..+..... |.+ .|
T Consensus 183 in~~hgLla~Gt~~g~VEfwDpR~ksr---------v~~l~~~~~-v~s---~p-------------------------- 223 (703)
T KOG2321|consen 183 INEEHGLLACGTEDGVVEFWDPRDKSR---------VGTLDAASS-VNS---HP-------------------------- 223 (703)
T ss_pred ecCccceEEecccCceEEEecchhhhh---------heeeecccc-cCC---Cc--------------------------
Confidence 999999999999999999999975221 111100000 000 00
Q ss_pred CCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEe
Q 000268 480 CHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI 559 (1757)
Q Consensus 480 ~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs 559 (1757)
.......|+++.|+-+|-.+++|+
T Consensus 224 --------------------------------------------------------g~~~~~svTal~F~d~gL~~aVGt 247 (703)
T KOG2321|consen 224 --------------------------------------------------------GGDAAPSVTALKFRDDGLHVAVGT 247 (703)
T ss_pred --------------------------------------------------------cccccCcceEEEecCCceeEEeec
Confidence 001223589999999999999999
Q ss_pred cCCeEEEEECCCCceEEEEe-CCCCCeEEEEEecCCC-cEEEEEeCCCcEEEEeCCCCceEEEEeecCcceEEEEEcCCC
Q 000268 560 MDCRICVWNAADGSLVHSLT-GHTESTYVLDVHPFNP-RIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDG 637 (1757)
Q Consensus 560 ~DG~I~IWDl~tgkll~~L~-gH~~~VtsLafSPdd~-~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSPDG 637 (1757)
.+|.|.|||+++.+++..-. +..-+|..+.|.+.+. ..|+| .....++|||-.+|+....+. ....+.++++-|++
T Consensus 248 s~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiE-pt~~lND~C~~p~s 325 (703)
T KOG2321|consen 248 STGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIE-PTSDLNDFCFVPGS 325 (703)
T ss_pred cCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCceeecc-ccCCcCceeeecCC
Confidence 99999999999988776543 2344788999977543 34444 345678999999999999887 45569999999999
Q ss_pred CEEEEEeCCCeEEEEECC
Q 000268 638 ASIILSDDVGQLYILNTG 655 (1757)
Q Consensus 638 k~LAsgs~DG~I~IWdl~ 655 (1757)
-+++++-.++.+..|=+.
T Consensus 326 Gm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 326 GMFFTANESSKMHTYYIP 343 (703)
T ss_pred ceEEEecCCCcceeEEcc
Confidence 999999888877666553
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.2e-11 Score=142.12 Aligned_cols=201 Identities=10% Similarity=0.102 Sum_probs=143.0
Q ss_pred CCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCccee--eecCCCCCceEEEEccCccccccccccCCCCCCCCcccccc
Q 000268 401 NANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEID--VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478 (1757)
Q Consensus 401 SpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~--~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~ 478 (1757)
.+.+--+++|-..|.|.+.|...... ..+. ...-....|+++.|.|..
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~-------sklfne~r~i~ktsvT~ikWvpg~----------------------- 231 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEV-------SKLFNEERLINKSSVTCIKWVPGS----------------------- 231 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHH-------HHhhhhcccccccceEEEEEEeCC-----------------------
Confidence 45777788898999999998743111 1110 111123679999999875
Q ss_pred cCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEE
Q 000268 479 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA 558 (1757)
Q Consensus 479 ~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSG 558 (1757)
...++.+-.+|.+.++|..-... .....|...-.-..-............++.+..-....|+.++|||||++||+.
T Consensus 232 --~~~Fl~a~~sGnlyly~~~~~~~-~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~V 308 (636)
T KOG2394|consen 232 --DSLFLVAHASGNLYLYDKEIVCG-ATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATV 308 (636)
T ss_pred --CceEEEEEecCceEEeecccccc-CCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEE
Confidence 46788888999999997642110 000000000000000000000001113444555556689999999999999999
Q ss_pred ecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCcceEEEEEcC
Q 000268 559 IMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSP 635 (1757)
Q Consensus 559 s~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSP 635 (1757)
+.||.++|||..+.+++..++.--+...|++||| |+++|++||.|-.|.||.+..++.+..-++|...|..|+|.|
T Consensus 309 SqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 309 SQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 9999999999999999888888888899999999 889999999999999999999999999999999999999996
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.3e-10 Score=140.64 Aligned_cols=461 Identities=15% Similarity=0.165 Sum_probs=266.6
Q ss_pred CCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCC------------CEEEEEeCCceEEE
Q 000268 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNN------------ALVASASNDCIIRV 311 (1757)
Q Consensus 244 ~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg------------~lLASgS~DGtIrV 311 (1757)
..-.++.|+|.| +||.|+. ..|.|-|..+.+.++++.-|...|+.+.|.|-. -+||++...|.|.+
T Consensus 16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 335678899988 6777765 579999999999999999999999999998731 26788888899999
Q ss_pred EECCCCCceEEecCCCCceEEEEecCCCCce-EEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCC
Q 000268 312 WRLPDGLPISVLRGHTAAVTAIAFSPRPGSV-YQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGP 390 (1757)
Q Consensus 312 WDl~tg~~l~~l~gH~~~VtsLafSPdg~~~-~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~ 390 (1757)
||...+..+..+..|..+|..++|-+..... +.|++-....+|.+|+..+|........
T Consensus 94 ~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y-------------------- 153 (1062)
T KOG1912|consen 94 VDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY-------------------- 153 (1062)
T ss_pred EEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecccc--------------------
Confidence 9999999888899999999999998754332 4677777788999999999986655421
Q ss_pred CCcceEEEEECC-CCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCc-------eEEEEccCcccccccc
Q 000268 391 QSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDV-------NYVQFSGCAVASRFSL 462 (1757)
Q Consensus 391 ~~~~V~slafSp-dG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V-------~sLafSpdg~~s~~~~ 462 (1757)
......|+.+.| |.+.|..-+..|.+.+-+.-..+ ....+++.++.-..|...- +....+.... +
T Consensus 154 s~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~s--ep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~-s---- 226 (1062)
T KOG1912|consen 154 SHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLS--EPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPA-S---- 226 (1062)
T ss_pred CCcceeeeeeCCCCcceEEEEccCceEEEEeccCCC--CCCCCceeEEEecCccchhhhhhhhhccccccCCCc-c----
Confidence 223456788888 66777777778888777763221 2233445554444443310 0000000000 0
Q ss_pred ccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCC
Q 000268 463 ADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRG 542 (1757)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~ 542 (1757)
...........+.-.| ..++-...-..+.|+|++-. .+...+.-..+.
T Consensus 227 a~fity~a~faf~p~~---rn~lfi~~prellv~dle~~-----------------------------~~l~vvpier~~ 274 (1062)
T KOG1912|consen 227 AYFITYCAQFAFSPHW---RNILFITFPRELLVFDLEYE-----------------------------CCLAVVPIERGG 274 (1062)
T ss_pred hhHHHHHHhhhcChhh---hceEEEEeccceEEEcchhh-----------------------------ceeEEEEeccCC
Confidence 0000000000001111 22333344556777777621 112222223344
Q ss_pred eeEEEEcCCCC--EEEEEecCCeEEEEECCC----------------CceEEEEeCC-CCCeEEEEEecCCCcEEEEEeC
Q 000268 543 VNMIVWSLDNR--FVLAAIMDCRICVWNAAD----------------GSLVHSLTGH-TESTYVLDVHPFNPRIAMSAGY 603 (1757)
Q Consensus 543 VtsVafSPDG~--~LaSGs~DG~I~IWDl~t----------------gkll~~L~gH-~~~VtsLafSPdd~~lLaSgs~ 603 (1757)
+.-+.|-|+++ .|+++..||.+.||-.+. |..++.+..- .-.+...+..|.....++.--.
T Consensus 275 akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s 354 (1062)
T KOG1912|consen 275 AKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYS 354 (1062)
T ss_pred cceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhh
Confidence 55566666654 699999999999997654 2223322211 1123334445644444444446
Q ss_pred CCcEEEEeCCCCceEEEEe-------------------------------ecCcceEEEEE-----------cCCC----
Q 000268 604 DGKTIVWDIWEGIPIRIYE-------------------------------ISRFRLVDGKF-----------SPDG---- 637 (1757)
Q Consensus 604 DG~IrIWDl~tg~~l~~l~-------------------------------~~~~~Vtslaf-----------SPDG---- 637 (1757)
+|.+.+|.+.+|+.-.... .|..+.++... .|.|
T Consensus 355 ~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~ 434 (1062)
T KOG1912|consen 355 SGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPA 434 (1062)
T ss_pred cchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccc
Confidence 7889999988654321110 11112222211 1222
Q ss_pred ---CEEEEEeCCCeEEEEECCCCccccccc------cceeecCCCccEEEcc------CCceeecccccccCcCCCCCcc
Q 000268 638 ---ASIILSDDVGQLYILNTGQGESQKDAK------YDQFFLGDYRPLVQDT------YGNVLDQETQLAPHRRNLQDPL 702 (1757)
Q Consensus 638 ---k~LAsgs~DG~I~IWdl~tGe~~~~~~------~~~~fs~D~r~Li~d~------~g~vlD~~tql~phl~~l~~~L 702 (1757)
.++|+|...|+|.++|+.++...+... ..+-|...++.+.... .|.+.+... +
T Consensus 435 ~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~------------v 502 (1062)
T KOG1912|consen 435 GTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLV------------V 502 (1062)
T ss_pred eeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEE------------E
Confidence 257789999999999999986644222 2234444444332221 111111000 1
Q ss_pred cCCCCCCCCCcchhhhhcccccccceEECCCCCeEEEeeCCCCCCceEeeccCCcccccC---CCccccceeeeC-CCCC
Q 000268 703 CDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMID---PLPEFIDVMDWE-PENE 778 (1757)
Q Consensus 703 ~D~~~~p~p~~~Q~l~~~r~~~v~~lAfSPDG~~LAvg~d~s~~~~v~l~~l~~~~~l~~---plp~~i~~~~~s-PDg~ 778 (1757)
.|... -...++..+....+..+..|-.|..|+|||+. -.+..+.+|++.+...+.. .+|. ++.|+|+ |...
T Consensus 503 tdLrt-Glsk~fR~l~~~despI~~irvS~~~~yLai~---Fr~~plEiwd~kt~~~lr~mS~a~P~-it~leWsl~~~~ 577 (1062)
T KOG1912|consen 503 TDLRT-GLSKRFRGLQKPDESPIRAIRVSSSGRYLAIL---FRREPLEIWDLKTLRMLRLMSLALPL-ITVLEWSLPKHP 577 (1062)
T ss_pred EEccc-ccccccccCCCCCcCcceeeeecccCceEEEE---ecccchHHHhhccchHHHHHhhcCCc-EEEEeecccCCC
Confidence 11100 00111222212224457788899999999999 5566788999965543322 3454 6789999 6554
Q ss_pred cccC
Q 000268 779 VQSD 782 (1757)
Q Consensus 779 ~ls~ 782 (1757)
-+..
T Consensus 578 si~q 581 (1062)
T KOG1912|consen 578 SIKQ 581 (1062)
T ss_pred Cccc
Confidence 4443
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-10 Score=132.11 Aligned_cols=255 Identities=14% Similarity=0.183 Sum_probs=171.5
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCC---CceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEE
Q 000268 281 CRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG---LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIW 357 (1757)
Q Consensus 281 L~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg---~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIW 357 (1757)
+.--..+|+|.||++|++.+|.+.....|.||..... +...++..|...|++|.|.|..+ .|++++.|..-.+|
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn---rIvtcs~drnayVw 82 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN---RIVTCSHDRNAYVW 82 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC---ceeEccCCCCcccc
Confidence 3334578999999999999999999999999988655 46788999999999999999987 89999999999999
Q ss_pred ec-CCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcce
Q 000268 358 DA-RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 436 (1757)
Q Consensus 358 Dl-~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i 436 (1757)
.. ..+...+++.+ ..++..++++.|+|.++.||+|+....|.||.....+.- .-..
T Consensus 83 ~~~~~~~WkptlvL------------------lRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdW-----WVsK 139 (361)
T KOG1523|consen 83 TQPSGGTWKPTLVL------------------LRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDW-----WVSK 139 (361)
T ss_pred ccCCCCeeccceeE------------------EEeccceeeEeecCcCceEEeccCccEEEEEEEecccce-----ehhh
Confidence 98 55555555432 235677999999999999999999999999987431100 0000
Q ss_pred eeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccc
Q 000268 437 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHL 516 (1757)
Q Consensus 437 ~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l 516 (1757)
..-..+...|.++.|.|+. -+|++|+.|+..+|+..-
T Consensus 140 hikkPirStv~sldWhpnn--------------------------VLlaaGs~D~k~rVfSay----------------- 176 (361)
T KOG1523|consen 140 HIKKPIRSTVTSLDWHPNN--------------------------VLLAAGSTDGKCRVFSAY----------------- 176 (361)
T ss_pred hhCCccccceeeeeccCCc--------------------------ceecccccCcceeEEEEe-----------------
Confidence 1112233444555555443 244445555555554221
Q ss_pred cCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEEC--CCCceEEEEeCCCCCeEEEEEecCC
Q 000268 517 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA--ADGSLVHSLTGHTESTYVLDVHPFN 594 (1757)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl--~tgkll~~L~gH~~~VtsLafSPdd 594 (1757)
|.+|.--|. ---|+. .-|+++..+....+.|..+.|+| .
T Consensus 177 --------------------------IK~Vdekpa------------p~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~-s 217 (361)
T KOG1523|consen 177 --------------------------IKGVDEKPA------------PTPWGSKMPFGQLMSEASSSGGWVHGVLFSP-S 217 (361)
T ss_pred --------------------------eeccccCCC------------CCCCccCCcHHHHHHhhccCCCceeeeEeCC-C
Confidence 000000000 000111 12456666666778899999999 5
Q ss_pred CcEEEEEeCCCcEEEEeCCCCc-eEEEEeecCcceEEEEEcCCCCEEEEE
Q 000268 595 PRIAMSAGYDGKTIVWDIWEGI-PIRIYEISRFRLVDGKFSPDGASIILS 643 (1757)
Q Consensus 595 ~~lLaSgs~DG~IrIWDl~tg~-~l~~l~~~~~~VtslafSPDGk~LAsg 643 (1757)
+..|+-.++|..|.+-|..... .+..+....-+..++.|-.+...+++|
T Consensus 218 G~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag 267 (361)
T KOG1523|consen 218 GNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAG 267 (361)
T ss_pred CCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCceeecC
Confidence 5666777899999999987664 445554455677777776665554444
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.7e-10 Score=143.63 Aligned_cols=235 Identities=15% Similarity=0.048 Sum_probs=149.9
Q ss_pred ceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeC---CCcEEEEecCCCCccceeecCCCCccccCCCCC
Q 000268 307 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD---DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMA 383 (1757)
Q Consensus 307 GtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~---DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~ 383 (1757)
..|.+||.. +.....+..+...+.+.+|+|+++ .|+.++. ...|.+||+.++......
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~---~la~~s~~~~~~~l~~~dl~~g~~~~l~--------------- 244 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGK---KLAYVSFERGRSAIYVQDLATGQRELVA--------------- 244 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCC---EEEEEecCCCCcEEEEEECCCCCEEEec---------------
Confidence 469999985 444555666778899999999997 6666553 346999999877532111
Q ss_pred CCCCCCCCCcceEEEEECCCCCEEEE-eeCCc--eEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccc
Q 000268 384 PSSSAGPQSHQIFCCAFNANGTVFVT-GSSDT--LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 460 (1757)
Q Consensus 384 ~~~~~~~~~~~V~slafSpdG~~Las-Gs~DG--~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~ 460 (1757)
...+...+++|+|||+.|+. .+.+| .|++||+.++. +..+..+......++|+|++
T Consensus 245 ------~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~----------~~~lt~~~~~~~~~~~spDG----- 303 (433)
T PRK04922 245 ------SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ----------LTRLTNHFGIDTEPTWAPDG----- 303 (433)
T ss_pred ------cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC----------eEECccCCCCccceEECCCC-----
Confidence 01122346799999987764 44444 59999986532 23444555556678999987
Q ss_pred ccccCCCCCCCCcccccccCCCcEEEEc-CCCe--EEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeec
Q 000268 461 SLADSSKEDSTPKFKNSWFCHDNIVTCS-RDGS--AIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL 537 (1757)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~LvSgS-~DGt--I~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~ 537 (1757)
..|+.++ .+|. |.++++.++. ..++.
T Consensus 304 ---------------------~~l~f~sd~~g~~~iy~~dl~~g~------------------------------~~~lt 332 (433)
T PRK04922 304 ---------------------KSIYFTSDRGGRPQIYRVAASGGS------------------------------AERLT 332 (433)
T ss_pred ---------------------CEEEEEECCCCCceEEEEECCCCC------------------------------eEEee
Confidence 4555444 4555 4445544321 11111
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecCC---eEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeC--CCcEEEEeC
Q 000268 538 PTPRGVNMIVWSLDNRFVLAAIMDC---RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGY--DGKTIVWDI 612 (1757)
Q Consensus 538 ~h~~~VtsVafSPDG~~LaSGs~DG---~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~--DG~IrIWDl 612 (1757)
........++|||||++|+..+.++ .|.+||+.+++.. .+. +........|+|++..++++... .+.|.++++
T Consensus 333 ~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 333 FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 1222344689999999998865443 6999999888765 443 22345567999955445544443 245778888
Q ss_pred CCCceEEEEeecCcceEEEEEcC
Q 000268 613 WEGIPIRIYEISRFRLVDGKFSP 635 (1757)
Q Consensus 613 ~tg~~l~~l~~~~~~VtslafSP 635 (1757)
+|.....+..+.+.+...+|+|
T Consensus 411 -~g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 411 -DGRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred -CCCceEEcccCCCCCCCCccCC
Confidence 4555666655566777788887
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.9e-10 Score=143.29 Aligned_cols=235 Identities=15% Similarity=0.068 Sum_probs=154.3
Q ss_pred ceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC---ceEEEEECCCCCceEEecCCCCceEEEEecCCCCc
Q 000268 265 RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND---CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS 341 (1757)
Q Consensus 265 GtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~D---GtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~ 341 (1757)
..|.|||.. +...+.+..+...+.+.+|+|||+.|+.++.. ..|.+|++.+++... +..+.+...+++|+|+++.
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 479999986 44455566677889999999999999987643 479999998886543 3334555668899999972
Q ss_pred eEEEEEEeCCC--cEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeC-Cce--E
Q 000268 342 VYQLLSSSDDG--TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTL--A 416 (1757)
Q Consensus 342 ~~~LaSgs~DG--tIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~-DG~--I 416 (1757)
++++.+.+| .|.+||+.++.... +. .+.......+|+|||+.|+.++. +|. |
T Consensus 262 --l~~~~s~~g~~~Iy~~d~~~g~~~~-lt--------------------~~~~~~~~~~~spDG~~l~f~sd~~g~~~i 318 (433)
T PRK04922 262 --LALTLSRDGNPEIYVMDLGSRQLTR-LT--------------------NHFGIDTEPTWAPDGKSIYFTSDRGGRPQI 318 (433)
T ss_pred --EEEEEeCCCCceEEEEECCCCCeEE-Cc--------------------cCCCCccceEECCCCCEEEEEECCCCCceE
Confidence 334555555 58999998775322 10 11222456799999998887764 444 5
Q ss_pred EEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCC-C--eE
Q 000268 417 RVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRD-G--SA 493 (1757)
Q Consensus 417 rVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~D-G--tI 493 (1757)
.++++.++. ...+..+......++|+|++ +.|+..+.+ + .|
T Consensus 319 y~~dl~~g~----------~~~lt~~g~~~~~~~~SpDG--------------------------~~Ia~~~~~~~~~~I 362 (433)
T PRK04922 319 YRVAASGGS----------AERLTFQGNYNARASVSPDG--------------------------KKIAMVHGSGGQYRI 362 (433)
T ss_pred EEEECCCCC----------eEEeecCCCCccCEEECCCC--------------------------CEEEEEECCCCceeE
Confidence 666664321 12222233344568899987 455554333 2 58
Q ss_pred EEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecC---CeEEEEECC
Q 000268 494 IIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAA 570 (1757)
Q Consensus 494 ~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~D---G~I~IWDl~ 570 (1757)
.+||+.++.. ..+ .+......+.|+|||++|+..+.+ +.|+++++
T Consensus 363 ~v~d~~~g~~------------------------------~~L-t~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~- 410 (433)
T PRK04922 363 AVMDLSTGSV------------------------------RTL-TPGSLDESPSFAPNGSMVLYATREGGRGVLAAVST- 410 (433)
T ss_pred EEEECCCCCe------------------------------EEC-CCCCCCCCceECCCCCEEEEEEecCCceEEEEEEC-
Confidence 8999875331 011 111123346899999998877653 46888888
Q ss_pred CCceEEEEeCCCCCeEEEEEec
Q 000268 571 DGSLVHSLTGHTESTYVLDVHP 592 (1757)
Q Consensus 571 tgkll~~L~gH~~~VtsLafSP 592 (1757)
+|.....+..+.+.+..++|+|
T Consensus 411 ~g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 411 DGRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCCceEEcccCCCCCCCCccCC
Confidence 4566677776777788888887
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.6e-10 Score=140.89 Aligned_cols=234 Identities=14% Similarity=0.070 Sum_probs=154.7
Q ss_pred ceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC---CceEEEEECCCCCceEEecCCCCceEEEEecCCCCc
Q 000268 265 RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN---DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS 341 (1757)
Q Consensus 265 GtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~---DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~ 341 (1757)
..|.+||.. |...+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.++... .+..+.+.+.+.+|+||++
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~- 258 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGR- 258 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCC-
Confidence 479999985 5555667778889999999999999888764 468999999888653 4555667788999999997
Q ss_pred eEEEEEEeCCCc--EEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeC-Cc--eE
Q 000268 342 VYQLLSSSDDGT--CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DT--LA 416 (1757)
Q Consensus 342 ~~~LaSgs~DGt--IrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~-DG--~I 416 (1757)
.++++.+.+|. |.+||+.++.... +. .+.......+|+|||+.|+..+. +| .|
T Consensus 259 -~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt--------------------~~~~~~~~~~~spDG~~i~f~s~~~g~~~I 316 (435)
T PRK05137 259 -KVVMSLSQGGNTDIYTMDLRSGTTTR-LT--------------------DSPAIDTSPSYSPDGSQIVFESDRSGSPQL 316 (435)
T ss_pred -EEEEEEecCCCceEEEEECCCCceEE-cc--------------------CCCCccCceeEcCCCCEEEEEECCCCCCeE
Confidence 23456666665 6677887765321 11 12223456899999998887764 33 57
Q ss_pred EEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCC---CeE
Q 000268 417 RVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRD---GSA 493 (1757)
Q Consensus 417 rVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~D---GtI 493 (1757)
.+||+.++ ....+..+...+....|+|++ +.|+..+.+ ..|
T Consensus 317 y~~d~~g~----------~~~~lt~~~~~~~~~~~SpdG--------------------------~~ia~~~~~~~~~~i 360 (435)
T PRK05137 317 YVMNADGS----------NPRRISFGGGRYSTPVWSPRG--------------------------DLIAFTKQGGGQFSI 360 (435)
T ss_pred EEEECCCC----------CeEEeecCCCcccCeEECCCC--------------------------CEEEEEEcCCCceEE
Confidence 77787432 123333344556678899987 455554432 357
Q ss_pred EEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecC------CeEEEE
Q 000268 494 IIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD------CRICVW 567 (1757)
Q Consensus 494 ~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~D------G~I~IW 567 (1757)
.+||+.++. .. .......+..+.|+|||++|+..+.+ ..|+++
T Consensus 361 ~~~d~~~~~------------------------------~~-~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~ 409 (435)
T PRK05137 361 GVMKPDGSG------------------------------ER-ILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTV 409 (435)
T ss_pred EEEECCCCc------------------------------eE-eccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEE
Confidence 777765321 00 11111235667999999998876543 368888
Q ss_pred ECCCCceEEEEeCCCCCeEEEEEec
Q 000268 568 NAADGSLVHSLTGHTESTYVLDVHP 592 (1757)
Q Consensus 568 Dl~tgkll~~L~gH~~~VtsLafSP 592 (1757)
|+..+.. ..+. ..+.+...+|+|
T Consensus 410 dl~g~~~-~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 410 DLTGRNE-REVP-TPGDASDPAWSP 432 (435)
T ss_pred ECCCCce-EEcc-CCCCccCcccCC
Confidence 8865544 4554 344567788887
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1e-09 Score=126.16 Aligned_cols=291 Identities=18% Similarity=0.249 Sum_probs=184.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEec-CCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCc
Q 000268 286 GDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQF 364 (1757)
Q Consensus 286 ~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~-gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~ 364 (1757)
-.+..++|++.-..+|++..|-.|++|+-.. +....++ .....|+|++|-|.+.. .|+.|+..| |+||.....-.
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsas--elavgCr~g-IciW~~s~tln 174 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSAS--ELAVGCRAG-ICIWSDSRTLN 174 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcc--eeeeeecce-eEEEEcCcccc
Confidence 4567788888666678889999999999766 4444444 34578999999998763 677777765 99998753221
Q ss_pred cce-eecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeC-CceEEEecCCCCCCCCCCCCCcceeeecCC
Q 000268 365 SPR-IYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTLARVWNACKPNTDDSDQPNHEIDVLSGH 442 (1757)
Q Consensus 365 ~~~-i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~-DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH 442 (1757)
..+ +.. +..........+....|+++.|.+||..+++++- +..|.|||..++.. +......
T Consensus 175 ~~r~~~~--------~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~---------~pL~~~g 237 (445)
T KOG2139|consen 175 ANRNIRM--------MSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK---------IPLIPKG 237 (445)
T ss_pred ccccccc--------ccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc---------ccccccC
Confidence 111 100 0011111122334478999999999999998875 67899999987542 1112234
Q ss_pred CCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCC
Q 000268 443 ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPP 522 (1757)
Q Consensus 443 ~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~ 522 (1757)
-+.+.-+.|+|++ +.|+++.-|+..++|+... .|...
T Consensus 238 lgg~slLkwSPdg--------------------------d~lfaAt~davfrlw~e~q--------~wt~e--------- 274 (445)
T KOG2139|consen 238 LGGFSLLKWSPDG--------------------------DVLFAATCDAVFRLWQENQ--------SWTKE--------- 274 (445)
T ss_pred CCceeeEEEcCCC--------------------------CEEEEecccceeeeehhcc--------cceec---------
Confidence 5678899999997 7999999999999996542 12111
Q ss_pred CCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCC----Cc-----------eEEEE------eC-
Q 000268 523 MPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD----GS-----------LVHSL------TG- 580 (1757)
Q Consensus 523 ~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~t----gk-----------ll~~L------~g- 580 (1757)
+.....+.|...+|+|+|++|+.++. |.-+||.+.- +. ++..| .+
T Consensus 275 ------------rw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~ 341 (445)
T KOG2139|consen 275 ------------RWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQ 341 (445)
T ss_pred ------------ceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCc
Confidence 11122347889999999998876654 3344554321 10 11111 11
Q ss_pred --CCCCeEEEEEecCCCcEEEEEeC--------CCcEEEEeCCCCceEEEEe---ecCcceEEEEEcC---CCCEEEEEe
Q 000268 581 --HTESTYVLDVHPFNPRIAMSAGY--------DGKTIVWDIWEGIPIRIYE---ISRFRLVDGKFSP---DGASIILSD 644 (1757)
Q Consensus 581 --H~~~VtsLafSPdd~~lLaSgs~--------DG~IrIWDl~tg~~l~~l~---~~~~~VtslafSP---DGk~LAsgs 644 (1757)
-.+.+.+++|.|.+.++ |+.-. -+.|.+||....-.+.... ........+.|+| +|.+|.++-
T Consensus 342 ~l~cgeaq~lawDpsGeyL-av~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaW 420 (445)
T KOG2139|consen 342 RLCCGEAQCLAWDPSGEYL-AVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAW 420 (445)
T ss_pred ccccCccceeeECCCCCEE-EEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEe
Confidence 14678899999955444 44322 2346778876554443331 1112244566666 677888887
Q ss_pred CCCeEEEEEC
Q 000268 645 DVGQLYILNT 654 (1757)
Q Consensus 645 ~DG~I~IWdl 654 (1757)
..|.+.-|.+
T Consensus 421 sTGriq~ypl 430 (445)
T KOG2139|consen 421 STGRIQRYPL 430 (445)
T ss_pred ccCceEeeee
Confidence 7788877765
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.8e-10 Score=141.05 Aligned_cols=236 Identities=15% Similarity=0.113 Sum_probs=153.5
Q ss_pred ceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC---ceEEEEECCCCCceEEecCCCCceEEEEecCCCCc
Q 000268 265 RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND---CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS 341 (1757)
Q Consensus 265 GtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~D---GtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~ 341 (1757)
..|.+||.. |.....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+||++
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~- 252 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGR- 252 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC-
Confidence 468888874 55555666778899999999999999887643 469999999887543 333445667899999997
Q ss_pred eEEE-EEEeCCCcEEEEecC--CCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeC-CceEE
Q 000268 342 VYQL-LSSSDDGTCRIWDAR--YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTLAR 417 (1757)
Q Consensus 342 ~~~L-aSgs~DGtIrIWDl~--tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~-DG~Ir 417 (1757)
.| ++.+.+|...||.+. .+. ...+ ..+.......+|+|||+.|+..+. +|...
T Consensus 253 --~la~~~~~~g~~~Iy~~d~~~~~-~~~l--------------------t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~ 309 (427)
T PRK02889 253 --TLAVALSRDGNSQIYTVNADGSG-LRRL--------------------TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQ 309 (427)
T ss_pred --EEEEEEccCCCceEEEEECCCCC-cEEC--------------------CCCCCCCcCeEEcCCCCEEEEEecCCCCcE
Confidence 45 466778887777653 332 1111 012223456789999998876654 46666
Q ss_pred EecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCC---eEE
Q 000268 418 VWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG---SAI 494 (1757)
Q Consensus 418 VWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DG---tI~ 494 (1757)
||.+.... . ....+..+........|+|+| +.|+..+.++ .|.
T Consensus 310 Iy~~~~~~-------g-~~~~lt~~g~~~~~~~~SpDG--------------------------~~Ia~~s~~~g~~~I~ 355 (427)
T PRK02889 310 IYRMPASG-------G-AAQRVTFTGSYNTSPRISPDG--------------------------KLLAYISRVGGAFKLY 355 (427)
T ss_pred EEEEECCC-------C-ceEEEecCCCCcCceEECCCC--------------------------CEEEEEEccCCcEEEE
Confidence 66653110 1 111222222334467889887 5666555443 689
Q ss_pred EEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCC---eEEEEECCC
Q 000268 495 IWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC---RICVWNAAD 571 (1757)
Q Consensus 495 IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG---~I~IWDl~t 571 (1757)
+||+.++.. ..+. .......+.|+|||++|+.++.++ .+.+.++ +
T Consensus 356 v~d~~~g~~------------------------------~~lt-~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~ 403 (427)
T PRK02889 356 VQDLATGQV------------------------------TALT-DTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-D 403 (427)
T ss_pred EEECCCCCe------------------------------EEcc-CCCCccCceECCCCCEEEEEEecCCCEEEEEEEC-C
Confidence 999875331 0111 111234678999999998877554 3666676 5
Q ss_pred CceEEEEeCCCCCeEEEEEec
Q 000268 572 GSLVHSLTGHTESTYVLDVHP 592 (1757)
Q Consensus 572 gkll~~L~gH~~~VtsLafSP 592 (1757)
|.....+..+.+.+...+|+|
T Consensus 404 g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 404 GRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred CCceEEeecCCCCCCCCccCC
Confidence 777777777778888899988
|
|
| >cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-11 Score=123.62 Aligned_cols=100 Identities=15% Similarity=0.274 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHHhhhccccc--ccccccccccccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhh
Q 000268 1644 NRNKLLSAFAKLEQSANRVQD--QYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAES 1721 (1757)
Q Consensus 1644 ~r~kLls~l~kle~~~~~~~~--~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~ 1721 (1757)
++..+.+.+..+..-....-. .-.|.++.. ..++|+.+|+.||||.+|++||+++.|+++++|..|+.+||.||.+
T Consensus 4 vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~--~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr~ 81 (110)
T cd05526 4 VQELLATLFVSVMNHQDEEGRCYSDSLAELPE--LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERARR 81 (110)
T ss_pred HHHHHHHHHHHHHhccCCCCCCchHHHHHCCC--cccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHHH
Confidence 444555555555332211111 123444444 5678899999999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHh
Q 000268 1722 YFGRNTDLSTKIKRLSDLVTRTLS 1745 (1757)
Q Consensus 1722 fn~~~s~i~~~a~~l~~~~~~~l~ 1745 (1757)
||+++|.|+..|..|+++|.++-.
T Consensus 82 yN~~~S~iy~dA~eLq~~f~~~rd 105 (110)
T cd05526 82 LSRTDSEIYEDAVELQQFFIKIRD 105 (110)
T ss_pred hCcccCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999997643
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-10 Score=136.34 Aligned_cols=232 Identities=16% Similarity=0.179 Sum_probs=148.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCceEEEEECCCCCc----eE--EecCCCCceEEEEe--cCCCCceEEEEEEeCCCcEEEEe
Q 000268 287 DITDLAVSSNNALVASASNDCIIRVWRLPDGLP----IS--VLRGHTAAVTAIAF--SPRPGSVYQLLSSSDDGTCRIWD 358 (1757)
Q Consensus 287 ~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~----l~--~l~gH~~~VtsLaf--SPdg~~~~~LaSgs~DGtIrIWD 358 (1757)
.++...++-.|.+|+..- ...+.+|+...+.. +. .+.+ ...+|-+| .++.....-|+.|-.-|.|++.|
T Consensus 125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~g--t~P~cHdfn~~~a~~~g~dllIGf~tGqvq~id 201 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKG--TSPTCHDFNSFTATPKGLDLLIGFTTGQVQLID 201 (636)
T ss_pred ceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccC--CCCceecccccccCCCCcceEEeeccCceEEec
Confidence 445555566677665543 34688888874422 21 1222 12233333 22222223677888889999998
Q ss_pred cCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCC-CEEEEeeCCceEEEecCCCCC--CCCCC---CC
Q 000268 359 ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPN--TDDSD---QP 432 (1757)
Q Consensus 359 l~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG-~~LasGs~DG~IrVWDl~t~~--~~~s~---~~ 432 (1757)
.........+.. ...-....|+|+.|-|.+ ..|+++..+|.+++||..-.- ..... ..
T Consensus 202 p~~~~~sklfne----------------~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~ 265 (636)
T KOG2394|consen 202 PINFEVSKLFNE----------------ERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKD 265 (636)
T ss_pred chhhHHHHhhhh----------------cccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCC
Confidence 765332221110 001123679999999954 567777889999999762110 00000 00
Q ss_pred C--------------cceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeC
Q 000268 433 N--------------HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIP 498 (1757)
Q Consensus 433 ~--------------~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl 498 (1757)
. .++..+.--.+.|+.++|+|+| .+|++.+.||.++|||+
T Consensus 266 ~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG--------------------------~~LA~VSqDGfLRvF~f 319 (636)
T KOG2394|consen 266 GDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDG--------------------------KYLATVSQDGFLRIFDF 319 (636)
T ss_pred CCeeEEeeeeccccCCccceeEeccccccceeEcCCC--------------------------ceEEEEecCceEEEeec
Confidence 0 1111222223466777777765 79999999999999999
Q ss_pred CCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEE
Q 000268 499 RSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL 578 (1757)
Q Consensus 499 ~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L 578 (1757)
.+.+.... ...--++..||+|||||+||++|+.|--|.||.+..++.+..-
T Consensus 320 dt~eLlg~-----------------------------mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG 370 (636)
T KOG2394|consen 320 DTQELLGV-----------------------------MKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG 370 (636)
T ss_pred cHHHHHHH-----------------------------HHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEec
Confidence 86432211 1112356899999999999999999999999999999999999
Q ss_pred eCCCCCeEEEEEec
Q 000268 579 TGHTESTYVLDVHP 592 (1757)
Q Consensus 579 ~gH~~~VtsLafSP 592 (1757)
.||...|..|+|.|
T Consensus 371 qGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 371 QGHKSWVSVVAFDP 384 (636)
T ss_pred cccccceeeEeecc
Confidence 99999999999973
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.5e-10 Score=129.37 Aligned_cols=324 Identities=13% Similarity=0.103 Sum_probs=202.3
Q ss_pred EEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceee
Q 000268 290 DLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIY 369 (1757)
Q Consensus 290 sLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~ 369 (1757)
-++|||+|++||+++.- .+.|-|..+-+..+.+.. -..|.-+.|..+.- +.|.....++.|.+|++........+.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~--~ilC~~yk~~~vqvwsl~Qpew~ckId 88 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSC--HILCVAYKDPKVQVWSLVQPEWYCKID 88 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccce--eeeeeeeccceEEEEEeecceeEEEec
Confidence 46799999999999765 788889888766555443 35677788988754 466677889999999998766554442
Q ss_pred cCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEE-EeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceE
Q 000268 370 IPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFV-TGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNY 448 (1757)
Q Consensus 370 l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~La-sGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~s 448 (1757)
.....+.+++|||||+.|+ +..-+-.|.||.+.+.+ ...+......+..
T Consensus 89 --------------------eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~----------~~~~~~pK~~~kg 138 (447)
T KOG4497|consen 89 --------------------EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK----------GYLLPHPKTNVKG 138 (447)
T ss_pred --------------------cCCCcceeeeECCCcceEeeeecceeEEEEEEeccce----------eEEecccccCcee
Confidence 2455688999999996554 55568899999997632 2223333456788
Q ss_pred EEEccCccccccccccCCCCCCCCccccccc-----C-CCcEEEE---cC-CCeEEEEeCCCCCCCcccccccccccccC
Q 000268 449 VQFSGCAVASRFSLADSSKEDSTPKFKNSWF-----C-HDNIVTC---SR-DGSAIIWIPRSRRSHPKAARWTQAYHLKV 518 (1757)
Q Consensus 449 LafSpdg~~s~~~~~~~~~~~~~~~~~~~~~-----~-~~~LvSg---S~-DGtI~IWDl~t~k~~~~~~~w~~~~~l~~ 518 (1757)
++|.++|..........-+..........|. . +..=.+| +. +..+.+||.-- ...
T Consensus 139 ~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~L--------------eyk- 203 (447)
T KOG4497|consen 139 YAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVL--------------EYK- 203 (447)
T ss_pred EEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchh--------------hhe-
Confidence 9999987432221111000000000001110 0 0000111 12 23345554321 000
Q ss_pred CCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCce------------------------
Q 000268 519 PPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSL------------------------ 574 (1757)
Q Consensus 519 ~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkl------------------------ 574 (1757)
.-...-.-++..++|+|.+++|++|+.|+.++|.+--+.+.
T Consensus 204 ---------------v~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~ 268 (447)
T KOG4497|consen 204 ---------------VYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFS 268 (447)
T ss_pred ---------------eeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcc
Confidence 00112235688999999999999999999998865322110
Q ss_pred ------------------------------------EEEEe------CCCCCeEEEEEecCCCcEEEEEeC--CCcEEEE
Q 000268 575 ------------------------------------VHSLT------GHTESTYVLDVHPFNPRIAMSAGY--DGKTIVW 610 (1757)
Q Consensus 575 ------------------------------------l~~L~------gH~~~VtsLafSPdd~~lLaSgs~--DG~IrIW 610 (1757)
++.++ ...-.+.-++|++ +..+++|-.. -..+-||
T Consensus 269 ~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~-Ds~y~aTrnd~~PnalW~W 347 (447)
T KOG4497|consen 269 IVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC-DSTYAATRNDKYPNALWLW 347 (447)
T ss_pred hhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC-CceEEeeecCCCCceEEEE
Confidence 11111 1122456789999 7788877542 3578999
Q ss_pred eCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc-----ccccceeecCCCccEEEc
Q 000268 611 DIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK-----DAKYDQFFLGDYRPLVQD 679 (1757)
Q Consensus 611 Dl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~tGe~~~-----~~~~~~~fs~D~r~Li~d 679 (1757)
|+..-++...+. ...+|....|.|....|+++.....+++|...-...+. .....+.|..+|..++.-
T Consensus 348 dlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~ 420 (447)
T KOG4497|consen 348 DLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLC 420 (447)
T ss_pred echhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEE
Confidence 998777666654 56689999999999999998888899999875433322 112334566666665543
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.2e-09 Score=123.45 Aligned_cols=177 Identities=18% Similarity=0.268 Sum_probs=128.9
Q ss_pred CCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEec-CCCCeEEEEEcCCCC-EEEEEeCCceEEEEECCC----C
Q 000268 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRG-HEGDITDLAVSSNNA-LVASASNDCIIRVWRLPD----G 317 (1757)
Q Consensus 244 ~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~g-H~~~VtsLafSPDg~-lLASgS~DGtIrVWDl~t----g 317 (1757)
..+..++|++.-..+|++..|-.|+||+-.. ++...++. ....|+||+|-|.+. -|+.|+.. -|.||.... +
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence 4567788998767788899999999999766 55555553 456899999999654 66666655 599997642 1
Q ss_pred Cc----------eEEecCCCCceEEEEecCCCCceEEEEEEeC-CCcEEEEecCCCCccceeecCCCCccccCCCCCCCC
Q 000268 318 LP----------ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD-DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1757)
Q Consensus 318 ~~----------l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~-DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~ 386 (1757)
.. +....+| ..|++++|.+|+. .|++++. |..|.|||+.++..++...
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt---~l~tAS~gsssi~iWdpdtg~~~pL~~----------------- 235 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT---ILVTASFGSSSIMIWDPDTGQKIPLIP----------------- 235 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCC---EEeecccCcceEEEEcCCCCCcccccc-----------------
Confidence 21 1122344 7899999999987 7777764 5789999999998665441
Q ss_pred CCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCc
Q 000268 387 SAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCA 455 (1757)
Q Consensus 387 ~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg 455 (1757)
...+.+.-+.|||||.+|++++-|+..++|.... .........+ .+.|...+|+|+|
T Consensus 236 ---~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q--------~wt~erw~lg-sgrvqtacWspcG 292 (445)
T KOG2139|consen 236 ---KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQ--------SWTKERWILG-SGRVQTACWSPCG 292 (445)
T ss_pred ---cCCCceeeEEEcCCCCEEEEecccceeeeehhcc--------cceecceecc-CCceeeeeecCCC
Confidence 1345578899999999999999999999996532 1222222222 3489999999998
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.4e-10 Score=139.96 Aligned_cols=240 Identities=15% Similarity=0.091 Sum_probs=150.9
Q ss_pred ceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCC---CcEEEEecCCCCccceeecCCCCccccCCCCC
Q 000268 307 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD---GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMA 383 (1757)
Q Consensus 307 GtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~D---GtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~ 383 (1757)
..|.+||. +|.....+..+...+.+.+|+||++ .|+.++.+ ..|.+||+.+++.....
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~---~la~~s~~~~~~~I~~~dl~~g~~~~l~--------------- 236 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGT---KLAYVSFESKKPVVYVHDLATGRRRVVA--------------- 236 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCC---EEEEEEccCCCcEEEEEECCCCCEEEee---------------
Confidence 46777786 4555556667788899999999997 66655532 45999999887642211
Q ss_pred CCCCCCCCCcceEEEEECCCCCEEEE-eeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccc
Q 000268 384 PSSSAGPQSHQIFCCAFNANGTVFVT-GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSL 462 (1757)
Q Consensus 384 ~~~~~~~~~~~V~slafSpdG~~Las-Gs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~ 462 (1757)
...+.+.+.+|+|||+.|+. .+.+|...||.+... ......+..+...+....|+|++
T Consensus 237 ------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~--------~~~~~~lt~~~~~~~~~~wSpDG------- 295 (427)
T PRK02889 237 ------NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD--------GSGLRRLTQSSGIDTEPFFSPDG------- 295 (427)
T ss_pred ------cCCCCccceEECCCCCEEEEEEccCCCceEEEEECC--------CCCcEECCCCCCCCcCeEEcCCC-------
Confidence 01223457899999998874 566777667665321 11233445555556778899987
Q ss_pred ccCCCCCCCCcccccccCCCcEEEE-cCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCC
Q 000268 463 ADSSKEDSTPKFKNSWFCHDNIVTC-SRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR 541 (1757)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~LvSg-S~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~ 541 (1757)
..|+.. ..+|...||.+.... .....+.....
T Consensus 296 -------------------~~l~f~s~~~g~~~Iy~~~~~~----------------------------g~~~~lt~~g~ 328 (427)
T PRK02889 296 -------------------RSIYFTSDRGGAPQIYRMPASG----------------------------GAAQRVTFTGS 328 (427)
T ss_pred -------------------CEEEEEecCCCCcEEEEEECCC----------------------------CceEEEecCCC
Confidence 455544 445677777654210 01111111122
Q ss_pred CeeEEEEcCCCCEEEEEecCC---eEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCc--EEEEeCCCCc
Q 000268 542 GVNMIVWSLDNRFVLAAIMDC---RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGK--TIVWDIWEGI 616 (1757)
Q Consensus 542 ~VtsVafSPDG~~LaSGs~DG---~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~--IrIWDl~tg~ 616 (1757)
.....+|||||++|+..+.++ .|++||+.+++... +..+ .....+.|+|++..++++....|. +.+.++ +|.
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~ 405 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGR 405 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCC
Confidence 234578999999999877654 69999998887554 3322 234678999955555555544443 455566 566
Q ss_pred eEEEEeecCcceEEEEEcCC
Q 000268 617 PIRIYEISRFRLVDGKFSPD 636 (1757)
Q Consensus 617 ~l~~l~~~~~~VtslafSPD 636 (1757)
..+.+..+.+.+...+|+|-
T Consensus 406 ~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 406 IKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred ceEEeecCCCCCCCCccCCC
Confidence 66666656667777888874
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.8e-09 Score=118.39 Aligned_cols=239 Identities=13% Similarity=0.176 Sum_probs=156.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCC--ceEEEEecCCCCceEEEEEEeCC------CcEEEEe
Q 000268 287 DITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTA--AVTAIAFSPRPGSVYQLLSSSDD------GTCRIWD 358 (1757)
Q Consensus 287 ~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~--~VtsLafSPdg~~~~~LaSgs~D------GtIrIWD 358 (1757)
...+++|+.|...+++|..+| .+||+.+--+......-+.+ .+.-+-|-.+ .+.++||.. ..|.|||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N----~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSN----YLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhc----eEEEecCCCCCCCCCceEEEEe
Confidence 445699999999999887776 89999864332222221222 2222333222 133444433 4699999
Q ss_pred cCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceee
Q 000268 359 ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDV 438 (1757)
Q Consensus 359 l~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~ 438 (1757)
=...+++..+. ....|.++.+.++. |++. ..+.|.||..... .+.+..
T Consensus 82 D~k~~~i~el~---------------------f~~~I~~V~l~r~r--iVvv-l~~~I~VytF~~n--------~k~l~~ 129 (346)
T KOG2111|consen 82 DLKERCIIELS---------------------FNSEIKAVKLRRDR--IVVV-LENKIYVYTFPDN--------PKLLHV 129 (346)
T ss_pred cccCcEEEEEE---------------------eccceeeEEEcCCe--EEEE-ecCeEEEEEcCCC--------hhheee
Confidence 55555555543 34568899997663 4443 3678999988421 222222
Q ss_pred ecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEE-EcCCCeEEEEeCCCCCCCccccccccccccc
Q 000268 439 LSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVT-CSRDGSAIIWIPRSRRSHPKAARWTQAYHLK 517 (1757)
Q Consensus 439 l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvS-gS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~ 517 (1757)
+.....+=--++..|.. ....||. |-.-|.|.|-|+...+
T Consensus 130 ~et~~NPkGlC~~~~~~------------------------~k~~LafPg~k~GqvQi~dL~~~~--------------- 170 (346)
T KOG2111|consen 130 IETRSNPKGLCSLCPTS------------------------NKSLLAFPGFKTGQVQIVDLASTK--------------- 170 (346)
T ss_pred eecccCCCceEeecCCC------------------------CceEEEcCCCccceEEEEEhhhcC---------------
Confidence 22221111112222211 0123443 4456899999887522
Q ss_pred CCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCe-EEEEECCCCceEEEEeCC--CCCeEEEEEecCC
Q 000268 518 VPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCR-ICVWNAADGSLVHSLTGH--TESTYVLDVHPFN 594 (1757)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~-I~IWDl~tgkll~~L~gH--~~~VtsLafSPdd 594 (1757)
..+...+..|...|.|++++.+|..|||++..|+ |+|||..+|+++..++-. ...|++|+||| +
T Consensus 171 ------------~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp-~ 237 (346)
T KOG2111|consen 171 ------------PNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP-N 237 (346)
T ss_pred ------------cCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC-C
Confidence 1134567789999999999999999999999998 899999999999998632 34699999999 7
Q ss_pred CcEEEEEeCCCcEEEEeCCC
Q 000268 595 PRIAMSAGYDGKTIVWDIWE 614 (1757)
Q Consensus 595 ~~lLaSgs~DG~IrIWDl~t 614 (1757)
..+|++++..|+|.|+.+..
T Consensus 238 ~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 238 SSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred ccEEEEEcCCCeEEEEEeec
Confidence 88999999999999998865
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.3e-10 Score=130.78 Aligned_cols=335 Identities=17% Similarity=0.191 Sum_probs=233.3
Q ss_pred cceeEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEe-cCCCeEEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCceE
Q 000268 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWS-METAYCLASCR-GHEGDITDLAVSSNNALVASASNDCII 309 (1757)
Q Consensus 232 ~~k~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWD-l~tg~~l~tL~-gH~~~VtsLafSPDg~lLASgS~DGtI 309 (1757)
+..+++.+.||.+.|+....-|-..-+++.+.|.+++||- ...|+.-..+. .-..+++++.+.++...|++|-..|++
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceE
Confidence 4556788999999999999999888999999999999994 34454433332 235789999999999999999999999
Q ss_pred EEEECC----CCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCC
Q 000268 310 RVWRLP----DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS 385 (1757)
Q Consensus 310 rVWDl~----tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~ 385 (1757)
.-+.+. ....++....|...|..+.|+-... .+++++.|..+.---.+.+..+....+....
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e---~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~----------- 158 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE---WVLSTGKDKQFAWHCTESGNRLGGYNFETPA----------- 158 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce---eEEEeccccceEEEeeccCCcccceEeeccC-----------
Confidence 988664 4456677788999999999998765 8999999987765545555433333221110
Q ss_pred CCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccC
Q 000268 386 SSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 465 (1757)
Q Consensus 386 ~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~ 465 (1757)
+++.|.-. +..+|...|.|.+..+.. .....+..+.+|.+.+.++.|.+..
T Consensus 159 ----------t~~~~d~~--~~fvGd~~gqvt~lr~~~-------~~~~~i~~~~~h~~~~~~l~Wd~~~---------- 209 (404)
T KOG1409|consen 159 ----------SALQFDAL--YAFVGDHSGQITMLKLEQ-------NGCQLITTFNGHTGEVTCLKWDPGQ---------- 209 (404)
T ss_pred ----------CCCceeeE--EEEecccccceEEEEEee-------cCCceEEEEcCcccceEEEEEcCCC----------
Confidence 01111111 445555666666555532 2245788899999999999999864
Q ss_pred CCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeE
Q 000268 466 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNM 545 (1757)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~Vts 545 (1757)
..|.+|..|..+.+||+-..+ +....+.+|...|..
T Consensus 210 ----------------~~LfSg~~d~~vi~wdigg~~----------------------------g~~~el~gh~~kV~~ 245 (404)
T KOG1409|consen 210 ----------------RLLFSGASDHSVIMWDIGGRK----------------------------GTAYELQGHNDKVQA 245 (404)
T ss_pred ----------------cEEEeccccCceEEEeccCCc----------------------------ceeeeeccchhhhhh
Confidence 689999999999999987432 334456778888999
Q ss_pred EEEcCCCCEEEEEecCCeEEEEECCCCceEE-----------------------------EEeCC-----CCCeEEEEEe
Q 000268 546 IVWSLDNRFVLAAIMDCRICVWNAADGSLVH-----------------------------SLTGH-----TESTYVLDVH 591 (1757)
Q Consensus 546 VafSPDG~~LaSGs~DG~I~IWDl~tgkll~-----------------------------~L~gH-----~~~VtsLafS 591 (1757)
+..-+--+.+++++.||.|.+|+........ -+.-| ...|...+-+
T Consensus 246 l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s 325 (404)
T KOG1409|consen 246 LSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSS 325 (404)
T ss_pred hhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCccccc
Confidence 9888888999999999999999986432110 00011 1111111111
Q ss_pred cCCCcEEEEEeCCCcEEE--------EeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 000268 592 PFNPRIAMSAGYDGKTIV--------WDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 656 (1757)
Q Consensus 592 Pdd~~lLaSgs~DG~IrI--------WDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~t 656 (1757)
......+-+..-.+++ .|. +..++.++...+..|+.+.+..+-.+|++++.|..|+|||+..
T Consensus 326 --~~~~~p~mg~e~~vR~~~~c~~~i~~~-~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 326 --NRSSYPTMGFEFSVRVCDSCYPTIKDE-ERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred --CccccccccceeEEEEecccchhhhcC-CCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 1111222233333444 444 3355667666667899999999999999999999999999854
|
|
| >COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-11 Score=151.22 Aligned_cols=106 Identities=19% Similarity=0.275 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhcC
Q 000268 1645 RNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFG 1724 (1757)
Q Consensus 1645 r~kLls~l~kle~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~ 1724 (1757)
+.+.+..+...+.........+.|..++.....|+||++|+.||||++|+++|+++.|+++++|+.|++|||+||.+||+
T Consensus 146 ~~~~i~~~~~~~~~~~~~~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~yN~ 225 (371)
T COG5076 146 DNKAIAKFKKQLFLRDGRFLSSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNG 225 (371)
T ss_pred HHHHHHHHHHHhhcccccccccccccCCccccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhccC
Confidence 33444333333333444445567888888889999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCCCC
Q 000268 1725 RNTDLSTKIKRLSDLVTRTLSSLKAP 1750 (1757)
Q Consensus 1725 ~~s~i~~~a~~l~~~~~~~l~~~~~~ 1750 (1757)
|++.++.+|+.|++.|...|+.++.+
T Consensus 226 ~~s~v~~~a~~l~~~~~~~i~~~~~~ 251 (371)
T COG5076 226 PDSSVYVDAKELEKYFLKLIEEIPEE 251 (371)
T ss_pred CCcchhhhhHHHHHHHHHHHHhcccc
Confidence 99999999999999999999987763
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.7e-09 Score=124.21 Aligned_cols=339 Identities=13% Similarity=0.131 Sum_probs=210.4
Q ss_pred eEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCc-------
Q 000268 235 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDC------- 307 (1757)
Q Consensus 235 ~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DG------- 307 (1757)
...++..-.-++..++|||.|++|++....| |.+|.-..+..+..+. ...|..+.|+|.+++|.+-+..+
T Consensus 24 ~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e 100 (561)
T COG5354 24 IHTRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIE 100 (561)
T ss_pred ccccccccCcchhheeecCcchheehhhccc-eEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhc
Confidence 3344444567899999999999999876654 9999988776665555 35799999999999999865433
Q ss_pred --------eEEEEECCCCCceEEecCCCCc--eE-EEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCcc
Q 000268 308 --------IIRVWRLPDGLPISVLRGHTAA--VT-AIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDA 376 (1757)
Q Consensus 308 --------tIrVWDl~tg~~l~~l~gH~~~--Vt-sLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~ 376 (1757)
.+.|||+.+|..+..+.+-..+ .+ -+.|+-+.. ++|-. ....+.|+++ ++.....- .
T Consensus 101 ~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~---y~ARv-v~~sl~i~e~-t~n~~~~p-----~-- 168 (561)
T COG5354 101 ISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDK---YVARV-VGSSLYIHEI-TDNIEEHP-----F-- 168 (561)
T ss_pred cCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecch---hhhhh-ccCeEEEEec-CCccccCc-----h--
Confidence 4999999999999998776655 55 678888876 33322 2345899997 44322110 0
Q ss_pred ccCCCCCCCCCCCCCCcceEEEEECCCC--CEEEE-----eeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEE
Q 000268 377 VAGRNMAPSSSAGPQSHQIFCCAFNANG--TVFVT-----GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYV 449 (1757)
Q Consensus 377 ~~g~~~~~~~~~~~~~~~V~slafSpdG--~~Las-----Gs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sL 449 (1757)
.......|....|+|.| ..||. ++..+.++||.+.... .+....-....-..+
T Consensus 169 -----------~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s---------~l~tk~lfk~~~~qL 228 (561)
T COG5354 169 -----------KNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS---------VLVTKNLFKVSGVQL 228 (561)
T ss_pred -----------hhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC---------eeeeeeeEeecccEE
Confidence 00113457788888864 33443 3557788888874321 111111111122344
Q ss_pred EEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCC
Q 000268 450 QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPR 529 (1757)
Q Consensus 450 afSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~ 529 (1757)
.|.+.|.....-.... .+...+++ ....+.|+++...
T Consensus 229 kW~~~g~~ll~l~~t~------~ksnKsyf---------gesnLyl~~~~e~---------------------------- 265 (561)
T COG5354 229 KWQVLGKYLLVLVMTH------TKSNKSYF---------GESNLYLLRITER---------------------------- 265 (561)
T ss_pred EEecCCceEEEEEEEe------eeccccee---------ccceEEEEeeccc----------------------------
Confidence 5555441100000000 00000000 1123444444421
Q ss_pred CCCceeecCCCCCeeEEEEcCCCCEEEE--EecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCC---
Q 000268 530 GGPRQRILPTPRGVNMIVWSLDNRFVLA--AIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYD--- 604 (1757)
Q Consensus 530 ~~~~~~l~~h~~~VtsVafSPDG~~LaS--Gs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~D--- 604 (1757)
.+.......++|..++|.|.++.+++ |.++-.+.++|+... +...+ ....-..+.|+| ..++++.+|.|
T Consensus 266 --~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp-~~r~il~agF~nl~ 339 (561)
T COG5354 266 --SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSP-HERYILFAGFDNLQ 339 (561)
T ss_pred --ccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccC-cccEEEEecCCccc
Confidence 11111245678999999999987766 458889999998654 44443 334446788999 66777777655
Q ss_pred CcEEEEeCCCCceEE-EEeecCcceEEEEEcCCCCEEEEE------eCCCeEEEEECCCCcc
Q 000268 605 GKTIVWDIWEGIPIR-IYEISRFRLVDGKFSPDGASIILS------DDVGQLYILNTGQGES 659 (1757)
Q Consensus 605 G~IrIWDl~tg~~l~-~l~~~~~~VtslafSPDGk~LAsg------s~DG~I~IWdl~tGe~ 659 (1757)
|.|-|||......+. .+.+. ...-+.|||||+++-+. -.|..|.||++.....
T Consensus 340 gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~ 399 (561)
T COG5354 340 GNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV 399 (561)
T ss_pred cceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEecCchh
Confidence 679999997665444 55432 34557899999998875 3478899999865443
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.4e-10 Score=130.68 Aligned_cols=273 Identities=13% Similarity=0.144 Sum_probs=180.6
Q ss_pred CCCeEEEEEcCCCC--EEEEEeCCceEEEEECCCCCceE------EecCCCCceEEEEecCCCCceEEEEEEeCCCcEEE
Q 000268 285 EGDITDLAVSSNNA--LVASASNDCIIRVWRLPDGLPIS------VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356 (1757)
Q Consensus 285 ~~~VtsLafSPDg~--lLASgS~DGtIrVWDl~tg~~l~------~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrI 356 (1757)
...|..++|.-+++ .|...+.+..+....+....... .....++.|..++.... .|++|-.+|.+.+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg-----~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADG-----TLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCC-----EEEEEecCCcEEE
Confidence 45677777776554 44444456666666665544333 23445667777776543 7999999999999
Q ss_pred EecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCC-CEEEEeeCC--ceEEEecCCCCCCCCCCCCC
Q 000268 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSD--TLARVWNACKPNTDDSDQPN 433 (1757)
Q Consensus 357 WDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG-~~LasGs~D--G~IrVWDl~t~~~~~s~~~~ 433 (1757)
|....+........ ......++..+.-++.. .++|+|+.. ..+.|||+............
T Consensus 130 ~~~k~~d~hss~l~-----------------~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNv 192 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLI-----------------KLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNV 192 (412)
T ss_pred EeccCCccccccce-----------------eeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCC
Confidence 99886542211000 00112334455555533 466679988 88999999653211110000
Q ss_pred cceeeecC--CCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCccccccc
Q 000268 434 HEIDVLSG--HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 511 (1757)
Q Consensus 434 ~~i~~l~g--H~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~ 511 (1757)
.. -.-+ -.-.++++.|.+.. .+..|++++.-+.+++||.+.++
T Consensus 193 pn--D~L~LrVPvW~tdi~Fl~g~------------------------~~~~fat~T~~hqvR~YDt~~qR--------- 237 (412)
T KOG3881|consen 193 PN--DRLGLRVPVWITDIRFLEGS------------------------PNYKFATITRYHQVRLYDTRHQR--------- 237 (412)
T ss_pred CC--ccccceeeeeeccceecCCC------------------------CCceEEEEecceeEEEecCcccC---------
Confidence 00 0000 01133455555431 13689999999999999998644
Q ss_pred ccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEE-EeCCCCCeEEEEE
Q 000268 512 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHS-LTGHTESTYVLDV 590 (1757)
Q Consensus 512 ~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~-L~gH~~~VtsLaf 590 (1757)
.|...+.....+|+++...|+|.+|++|..-|.+..||++.++++.. +.+-.+.|.+|..
T Consensus 238 -------------------RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~ 298 (412)
T KOG3881|consen 238 -------------------RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHC 298 (412)
T ss_pred -------------------cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEE
Confidence 23334444567899999999999999999999999999999998876 8999999999999
Q ss_pred ecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCcceEEEEEcC
Q 000268 591 HPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSP 635 (1757)
Q Consensus 591 SPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSP 635 (1757)
+| ...+|+++|-|..|+|+|+.+.+++.... -...++.+-+.+
T Consensus 299 hp-~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~ 341 (412)
T KOG3881|consen 299 HP-THPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRD 341 (412)
T ss_pred cC-CCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecC
Confidence 99 77899999999999999999977665433 223344444443
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.8e-08 Score=120.47 Aligned_cols=363 Identities=12% Similarity=0.126 Sum_probs=221.2
Q ss_pred eEEEEecCCCeEEEEEecC---CCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCce
Q 000268 266 LVKIWSMETAYCLASCRGH---EGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSV 342 (1757)
Q Consensus 266 tIkIWDl~tg~~l~tL~gH---~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~ 342 (1757)
.+.+|+...-....+...+ ...+...+++++|+++|.+. +..|.|++..++..+.+... ..++++.|+|-+.
T Consensus 12 ~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~--~~~~~L~fSP~g~-- 86 (566)
T KOG2315|consen 12 GFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVEL--KKTYDLLFSPKGN-- 86 (566)
T ss_pred eeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEecc--ceeeeeeeccccc--
Confidence 4778876543333222223 44577888999998887764 66899999988864444432 2889999999886
Q ss_pred EEEEEE-----eCC-----CcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeC
Q 000268 343 YQLLSS-----SDD-----GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS 412 (1757)
Q Consensus 343 ~~LaSg-----s~D-----GtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~ 412 (1757)
+|.+- ..+ -.+.+|++.++.....+... ... -++..|+.|..+.| --.
T Consensus 87 -yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k------------------~Q~--~W~~qfs~dEsl~a-rlv 144 (566)
T KOG2315|consen 87 -YLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKK------------------MQN--GWVPQFSIDESLAA-RLV 144 (566)
T ss_pred -ccccccccccccCCCCCCCceeeeeeccceehhheehh------------------hhc--Ccccccccchhhhh-hhh
Confidence 55441 122 34679999885444333210 111 25788998876433 334
Q ss_pred CceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEE-----E
Q 000268 413 DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVT-----C 487 (1757)
Q Consensus 413 DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvS-----g 487 (1757)
.+.+.+|++... ......-|...|..+.++|... +..+++ .
T Consensus 145 ~nev~f~~~~~f----------~~~~~kl~~~~i~~f~lSpgp~------------------------~~~vAvyvPe~k 190 (566)
T KOG2315|consen 145 SNEVQFYDLGSF----------KTIQHKLSVSGITMLSLSPGPE------------------------PPFVAVYVPEKK 190 (566)
T ss_pred cceEEEEecCCc----------cceeeeeeccceeeEEecCCCC------------------------CceEEEEccCCC
Confidence 577999998541 1122334577788889988641 123332 4
Q ss_pred cCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEE-Ee--c----
Q 000268 488 SRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA-AI--M---- 560 (1757)
Q Consensus 488 S~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaS-Gs--~---- 560 (1757)
+.-+.|+||...-...+.... .+. . ....-..+.|.+-|.-|++ ++ -
T Consensus 191 GaPa~vri~~~~~~~~~~~~a------------------------~ks-F-Fkadkvqm~WN~~gt~LLvLastdVDktn 244 (566)
T KOG2315|consen 191 GAPASVRIYKYPEEGQHQPVA------------------------NKS-F-FKADKVQMKWNKLGTALLVLASTDVDKTN 244 (566)
T ss_pred CCCcEEEEeccccccccchhh------------------------hcc-c-cccceeEEEeccCCceEEEEEEEeecCCC
Confidence 556678888665211110000 000 0 1111234567776664332 22 2
Q ss_pred -----CCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEE-eCCCcEEEEeCCCCceEEEEeecCcceEEEEEc
Q 000268 561 -----DCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA-GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFS 634 (1757)
Q Consensus 561 -----DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSg-s~DG~IrIWDl~tg~~l~~l~~~~~~VtslafS 634 (1757)
..++++.++....+.-.+. ..++|.++.|+|.+..+.++- -+-..+.|+|+ .+.++..+ +.++-.++-|+
T Consensus 245 ~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnl-r~~~v~df--~egpRN~~~fn 320 (566)
T KOG2315|consen 245 ASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNL-RGKPVFDF--PEGPRNTAFFN 320 (566)
T ss_pred ccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcC-CCCEeEeC--CCCCccceEEC
Confidence 3458888887333333333 478999999999665555554 45678999999 66776665 56677789999
Q ss_pred CCCCEEEEEeC---CCeEEEEECCCCccccccccceeecCCCccEEEccCCceeecccccccCcCCCCCcccCCCCCCCC
Q 000268 635 PDGASIILSDD---VGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYP 711 (1757)
Q Consensus 635 PDGk~LAsgs~---DG~I~IWdl~tGe~~~~~~~~~~fs~D~r~Li~d~~g~vlD~~tql~phl~~l~~~L~D~~~~p~p 711 (1757)
|.|++|+.++- -|.|-|||+.+-+.+....
T Consensus 321 p~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~----------------------------------------------- 353 (566)
T KOG2315|consen 321 PHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK----------------------------------------------- 353 (566)
T ss_pred CCCCEEEEeecCCCCCceEEEeccchhhccccc-----------------------------------------------
Confidence 99999997654 5899999987644332110
Q ss_pred CcchhhhhcccccccceEECCCCCeEEEeeC---CCCCCceEeeccCCcccccCCCccccceeeeCCC
Q 000268 712 EPYQTMYQQRRLGALGIEWRPSSLKLAVGPD---FSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEPE 776 (1757)
Q Consensus 712 ~~~Q~l~~~r~~~v~~lAfSPDG~~LAvg~d---~s~~~~v~l~~l~~~~~l~~plp~~i~~~~~sPD 776 (1757)
-....-.+|||||.++.++.. .-.+..+.+|+....-..-..++.-.-++.|-|-
T Consensus 354 ----------a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~f~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 354 ----------AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKMFKSELLQVEWRPF 411 (566)
T ss_pred ----------cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhhhhHhHhheeeeec
Confidence 001123679999999998842 2347789999984332222345533456788876
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.3e-10 Score=126.10 Aligned_cols=284 Identities=14% Similarity=0.218 Sum_probs=181.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCC-----ceEEecCCC------------CceEEEEecCCCCceEEEEE
Q 000268 285 EGDITDLAVSSNNALVASASNDCIIRVWRLPDGL-----PISVLRGHT------------AAVTAIAFSPRPGSVYQLLS 347 (1757)
Q Consensus 285 ~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~-----~l~~l~gH~------------~~VtsLafSPdg~~~~~LaS 347 (1757)
..-|.+|.|...|.+||+|..+|.|.++.-.... ....++.|. ..|..+.|.++++.. .++.
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a-~FLl 103 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA-EFLL 103 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc-EEEE
Confidence 4568899999999999999999999999643221 233444454 358889999987644 6777
Q ss_pred EeCCCcEEEEecCCCCccce-eecCC--CCcccc-------C------CCCCCCCCCCCCCcceEEEEECCCCCEEEEee
Q 000268 348 SSDDGTCRIWDARYSQFSPR-IYIPR--PSDAVA-------G------RNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS 411 (1757)
Q Consensus 348 gs~DGtIrIWDl~tg~~~~~-i~l~~--~~~~~~-------g------~~~~~~~~~~~~~~~V~slafSpdG~~LasGs 411 (1757)
.+.|.+|++|-+........ ..++. +...+. + ...........|..-|.+|.++.|+..++++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA- 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA- 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence 78899999998875433220 00000 000000 0 0000112234677889999999999988876
Q ss_pred CCceEEEecCCCCCCCCCCCCCcceeeecCC-----CCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEE
Q 000268 412 SDTLARVWNACKPNTDDSDQPNHEIDVLSGH-----ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVT 486 (1757)
Q Consensus 412 ~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH-----~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvS 486 (1757)
.|=.|.+|++.-... .. .+.-+..+ +.-|++..|+|.. .+.++-
T Consensus 183 DdLRINLWnlei~d~-----sF-nIVDIKP~nmEeLteVITsaEFhp~~-------------------------cn~f~Y 231 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQ-----SF-NIVDIKPANMEELTEVITSAEFHPHH-------------------------CNVFVY 231 (433)
T ss_pred cceeeeeccccccCC-----ce-eEEEccccCHHHHHHHHhhhccCHhH-------------------------ccEEEE
Confidence 477899999853221 11 11111111 2345666677653 368889
Q ss_pred EcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEE
Q 000268 487 CSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICV 566 (1757)
Q Consensus 487 gS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~I 566 (1757)
.+..|+|++.|++.....-.. ..+...+.......-+..--..|..+.|+.+|+|+++-.. -+|+|
T Consensus 232 SSSKGtIrLcDmR~~aLCd~h-------------sKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~ 297 (433)
T KOG1354|consen 232 SSSKGTIRLCDMRQSALCDAH-------------SKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKL 297 (433)
T ss_pred ecCCCcEEEeechhhhhhcch-------------hhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEE
Confidence 999999999999953211000 0000111111222222333456889999999999998754 58999
Q ss_pred EEC-CCCceEEEEeCCC------------CCe---EEEEEecCCCcEEEEEeCCCcEEEEeCCCCc
Q 000268 567 WNA-ADGSLVHSLTGHT------------EST---YVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI 616 (1757)
Q Consensus 567 WDl-~tgkll~~L~gH~------------~~V---tsLafSPdd~~lLaSgs~DG~IrIWDl~tg~ 616 (1757)
||+ ...+++.++.-|. +.| .-++|+- ++.+++||+....++++++..|.
T Consensus 298 wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 298 WDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred EeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEecCCCCc
Confidence 999 5677777776663 223 4578877 66788999999999999976663
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.3e-09 Score=133.92 Aligned_cols=234 Identities=16% Similarity=0.062 Sum_probs=149.5
Q ss_pred ceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEe---CCCcEEEEecCCCCccceeecCCCCccccCCCCC
Q 000268 307 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS---DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMA 383 (1757)
Q Consensus 307 GtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs---~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~ 383 (1757)
..|.+||.. |.....+..|...+.+.+|+||++ .|+..+ .+..|.+||+.++.... +.
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~---~lay~s~~~g~~~i~~~dl~~g~~~~-l~-------------- 242 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQ---EITYMSYANGRPRVYLLDLETGQREL-VG-------------- 242 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCC---EEEEEEecCCCCEEEEEECCCCcEEE-ee--------------
Confidence 378899974 555566777888999999999997 566554 34689999998875321 10
Q ss_pred CCCCCCCCCcceEEEEECCCCCEEEE-eeCCce--EEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccc
Q 000268 384 PSSSAGPQSHQIFCCAFNANGTVFVT-GSSDTL--ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 460 (1757)
Q Consensus 384 ~~~~~~~~~~~V~slafSpdG~~Las-Gs~DG~--IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~ 460 (1757)
...+.+.+.+|+|||+.|+. .+.++. |.+||+.++ ....+..+........|+|++
T Consensus 243 ------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~----------~~~~Lt~~~~~~~~~~~spDG----- 301 (435)
T PRK05137 243 ------NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSG----------TTTRLTDSPAIDTSPSYSPDG----- 301 (435)
T ss_pred ------cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCC----------ceEEccCCCCccCceeEcCCC-----
Confidence 12234567899999987764 444554 777787543 234455566667788999987
Q ss_pred ccccCCCCCCCCcccccccCCCcEEEEc-CCC--eEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeec
Q 000268 461 SLADSSKEDSTPKFKNSWFCHDNIVTCS-RDG--SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL 537 (1757)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~LvSgS-~DG--tI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~ 537 (1757)
..|+..+ .+| .|.+||+.++. ...+.
T Consensus 302 ---------------------~~i~f~s~~~g~~~Iy~~d~~g~~------------------------------~~~lt 330 (435)
T PRK05137 302 ---------------------SQIVFESDRSGSPQLYVMNADGSN------------------------------PRRIS 330 (435)
T ss_pred ---------------------CEEEEEECCCCCCeEEEEECCCCC------------------------------eEEee
Confidence 4555444 344 56666665321 12222
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecC---CeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCC-----CcEEE
Q 000268 538 PTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYD-----GKTIV 609 (1757)
Q Consensus 538 ~h~~~VtsVafSPDG~~LaSGs~D---G~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~D-----G~IrI 609 (1757)
.....+....|||||++|+....+ ..|.+||+.++. ...+.. ...+..+.|+|++..+++++... ..|.+
T Consensus 331 ~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~ 408 (435)
T PRK05137 331 FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYT 408 (435)
T ss_pred cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEE
Confidence 233445678899999999887643 368899986554 344432 23467889999555555544333 25778
Q ss_pred EeCCCCceEEEEeecCcceEEEEEcC
Q 000268 610 WDIWEGIPIRIYEISRFRLVDGKFSP 635 (1757)
Q Consensus 610 WDl~tg~~l~~l~~~~~~VtslafSP 635 (1757)
+|+..+.. ..+. ..+.+...+|+|
T Consensus 409 ~dl~g~~~-~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 409 VDLTGRNE-REVP-TPGDASDPAWSP 432 (435)
T ss_pred EECCCCce-EEcc-CCCCccCcccCC
Confidence 88865544 4443 344566677876
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.7e-11 Score=139.77 Aligned_cols=229 Identities=14% Similarity=0.173 Sum_probs=183.5
Q ss_pred eEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEE
Q 000268 330 VTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT 409 (1757)
Q Consensus 330 VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~Las 409 (1757)
-+.+.++.+|. +|+.|+.-|.|..+|..++++...+.+ ...|..+.|..+.++||+
T Consensus 132 PY~~~ytrnGr---hlllgGrKGHlAa~Dw~t~~L~~Ei~v---------------------~Etv~Dv~~LHneq~~AV 187 (545)
T KOG1272|consen 132 PYHLDYTRNGR---HLLLGGRKGHLAAFDWVTKKLHFEINV---------------------METVRDVTFLHNEQFFAV 187 (545)
T ss_pred CeeeeecCCcc---EEEecCCccceeeeecccceeeeeeeh---------------------hhhhhhhhhhcchHHHHh
Confidence 46688888887 899999999999999999998877743 344778889888888887
Q ss_pred eeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcC
Q 000268 410 GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR 489 (1757)
Q Consensus 410 Gs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~ 489 (1757)
+ ....++|||-. +..+..+..| ..|..+.|.|.- -+|++++.
T Consensus 188 A-QK~y~yvYD~~----------GtElHClk~~-~~v~rLeFLPyH--------------------------fLL~~~~~ 229 (545)
T KOG1272|consen 188 A-QKKYVYVYDNN----------GTELHCLKRH-IRVARLEFLPYH--------------------------FLLVAASE 229 (545)
T ss_pred h-hhceEEEecCC----------CcEEeehhhc-Cchhhhcccchh--------------------------heeeeccc
Confidence 6 56789999973 3455555544 467888888753 37888899
Q ss_pred CCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEEC
Q 000268 490 DGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 569 (1757)
Q Consensus 490 DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl 569 (1757)
.|.+..-|+.+++. +..+....+.+..++-.|-+..+-+|...|+|.+|..
T Consensus 230 ~G~L~Y~DVS~Gkl-----------------------------Va~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP 280 (545)
T KOG1272|consen 230 AGFLKYQDVSTGKL-----------------------------VASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSP 280 (545)
T ss_pred CCceEEEeechhhh-----------------------------hHHHHccCCccchhhcCCccceEEEcCCCceEEecCC
Confidence 99999999997552 2223334456777788888889999999999999999
Q ss_pred CCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeE
Q 000268 570 ADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQL 649 (1757)
Q Consensus 570 ~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I 649 (1757)
...+++..+-.|.++|.+|++.+ +++++||+|.|..|+|||+..-..+.++.. ..+...++||.-|-+ |+ +....|
T Consensus 281 ~skePLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglL-A~-~~G~~v 356 (545)
T KOG1272|consen 281 NSKEPLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGLL-AL-SYGDHV 356 (545)
T ss_pred CCcchHHHHHhcCCCcceEEECC-CCcEEeecccccceeEeeeccccccceeec-CCCccccccccccce-ee-ecCCee
Confidence 99999999999999999999999 889999999999999999999888887764 567788899987743 33 333578
Q ss_pred EEEE
Q 000268 650 YILN 653 (1757)
Q Consensus 650 ~IWd 653 (1757)
.||.
T Consensus 357 ~iw~ 360 (545)
T KOG1272|consen 357 QIWK 360 (545)
T ss_pred eeeh
Confidence 8886
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-08 Score=125.08 Aligned_cols=417 Identities=12% Similarity=0.131 Sum_probs=253.7
Q ss_pred CCEEEEEECCCCCEEEEEcCCceEEEEecCCCe---------------EEEEEecCCCCeEEEEEcCCCCEEEEEeCCce
Q 000268 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY---------------CLASCRGHEGDITDLAVSSNNALVASASNDCI 308 (1757)
Q Consensus 244 ~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~---------------~l~tL~gH~~~VtsLafSPDg~lLASgS~DGt 308 (1757)
....|++|.....++|+|+.||.++|..+.+.. .-+++.||.+.|.-+.|+.+.+.|-+...+|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 457899999999999999999999999875421 22467899999999999999999999999999
Q ss_pred EEEEECCCCCceEEe--cCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCC
Q 000268 309 IRVWRLPDGLPISVL--RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1757)
Q Consensus 309 IrVWDl~tg~~l~~l--~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~ 386 (1757)
|.||-+-.|.-...+ ....+.|.+++|..+|. .+.....||.|.+=.++..+.-..-
T Consensus 95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~---kIcIvYeDGavIVGsvdGNRIwgKe------------------ 153 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT---KICIVYEDGAVIVGSVDGNRIWGKE------------------ 153 (1189)
T ss_pred EEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc---EEEEEEccCCEEEEeeccceecchh------------------
Confidence 999998777543332 23456789999999997 7888888998888666544321100
Q ss_pred CCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCC---cceeeecCCCCCceEEEEccCccccccccc
Q 000268 387 SAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPN---HEIDVLSGHENDVNYVQFSGCAVASRFSLA 463 (1757)
Q Consensus 387 ~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~---~~i~~l~gH~~~V~sLafSpdg~~s~~~~~ 463 (1757)
-.......+.|++|...++.+-.+|.+.+||....-.. ..... .....+......|-.+.|.....
T Consensus 154 ---Lkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~-Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~------- 222 (1189)
T KOG2041|consen 154 ---LKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFER-KLEKDCEVNGTGIFSNFPTKIAEIEWNTGPY------- 222 (1189)
T ss_pred ---cchheccceeecccHHHHHhhhcCCcEEEecccccHHH-hhhhceEEeeeeeecCCCccccceeeccCcc-------
Confidence 01223457889999999988889999999997431100 00000 00011122222344455542210
Q ss_pred cCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCe
Q 000268 464 DSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGV 543 (1757)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~V 543 (1757)
...-.....|+++-..|.+.|-.-.+ .+...+....-.|
T Consensus 223 -----------~~v~pdrP~lavcy~nGr~QiMR~eN------------------------------D~~Pvv~dtgm~~ 261 (1189)
T KOG2041|consen 223 -----------QPVPPDRPRLAVCYANGRMQIMRSEN------------------------------DPEPVVVDTGMKI 261 (1189)
T ss_pred -----------ccCCCCCCEEEEEEcCceehhhhhcC------------------------------CCCCeEEecccEe
Confidence 00011235788898889888753332 1111223334568
Q ss_pred eEEEEcCCCCEEEEEecCC---------eEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 000268 544 NMIVWSLDNRFVLAAIMDC---------RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614 (1757)
Q Consensus 544 tsVafSPDG~~LaSGs~DG---------~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~t 614 (1757)
..+.|+++|..|++++.+. .|.+|.. -|+.+.+|+.....|++++|-. .+.-++. ..|+.|.+=+++-
T Consensus 262 vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg-~gLriA~-AvdsfiyfanIRP 338 (1189)
T KOG2041|consen 262 VGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEG-TGLRIAI-AVDSFIYFANIRP 338 (1189)
T ss_pred ecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcC-CceEEEE-EecceEEEEeecc
Confidence 8889999999999987542 4666653 5888999998899999999976 3433333 3588888877743
Q ss_pred CceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc-cccc--cceeecCCCccEEEccCCceeeccccc
Q 000268 615 GIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQ-KDAK--YDQFFLGDYRPLVQDTYGNVLDQETQL 691 (1757)
Q Consensus 615 g~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~tGe~~-~~~~--~~~~fs~D~r~Li~d~~g~vlD~~tql 691 (1757)
.-.-.-+ ...|.-+---++ .-...|.+||+.+.+.. +.+. ....|..+.=.|+.....+++-+...+
T Consensus 339 ~ykWgy~---e~TvVy~y~~~e-------~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~l 408 (1189)
T KOG2041|consen 339 EYKWGYI---EETVVYVYQKEE-------LPQYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLINRQDDGVIPEYSTL 408 (1189)
T ss_pred cceEEEe---eeEEEEEEccCC-------CcceEEEEEecccChhhhhhhcceeehheecccEEEEeccccCCCcchhhh
Confidence 2111111 011111100011 11246788998887653 2221 122445555455544444443333222
Q ss_pred ccCcCCCCCcccCCCCCCCCCcchhhhhcccccccceEECCCCCeEEEeeCCCCCCceEeeccCCcc
Q 000268 692 APHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLD 758 (1757)
Q Consensus 692 ~phl~~l~~~L~D~~~~p~p~~~Q~l~~~r~~~v~~lAfSPDG~~LAvg~d~s~~~~v~l~~l~~~~ 758 (1757)
-...+...-.||..-+.+....+..+.|.- ..-.|..++++ ....+-+|....++
T Consensus 409 e~~~~~~~l~LCNSIGT~lD~kytdirP~F--------v~vn~~~vviA----S~e~~~iWhy~~pK 463 (1189)
T KOG2041|consen 409 ENRSRVYFLQLCNSIGTSLDYKYTDIRPKF--------VCVNGICVVIA----SEERYFIWHYVLPK 463 (1189)
T ss_pred hcccceEEEeeecccCCcCCCCcceeeeeE--------EEecceEEEEe----ccccEEEEEEeccc
Confidence 223333344566666666666555544322 23356666666 44567788775444
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=7e-09 Score=132.94 Aligned_cols=150 Identities=25% Similarity=0.399 Sum_probs=125.5
Q ss_pred EEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceE-EecCCC
Q 000268 249 AIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS-VLRGHT 327 (1757)
Q Consensus 249 VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~-~l~gH~ 327 (1757)
+-++++.-++++|+.-+.|.+|+..--..-..+.||.+.|.++.|+-||.++++.|.|.++++|++++.+.+. +.-+|+
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs 218 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS 218 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc
Confidence 3457777799999999999999987332223588999999999999999999999999999999999998776 777999
Q ss_pred CceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEE
Q 000268 328 AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVF 407 (1757)
Q Consensus 328 ~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~L 407 (1757)
..|+.++|.|+ .+++++.|-++++|+.....+. .+ .......++.++..++...+
T Consensus 219 aRvw~~~~~~n-----~i~t~gedctcrvW~~~~~~l~-~y-------------------~~h~g~~iw~~~~~~~~~~~ 273 (967)
T KOG0974|consen 219 ARVWACCFLPN-----RIITVGEDCTCRVWGVNGTQLE-VY-------------------DEHSGKGIWKIAVPIGVIIK 273 (967)
T ss_pred ceeEEEEeccc-----eeEEeccceEEEEEecccceeh-hh-------------------hhhhhcceeEEEEcCCceEE
Confidence 99999999997 6999999999999976543322 11 11234558999999999999
Q ss_pred EEeeCCceEEEecCCC
Q 000268 408 VTGSSDTLARVWNACK 423 (1757)
Q Consensus 408 asGs~DG~IrVWDl~t 423 (1757)
++++.|+.+++|+...
T Consensus 274 vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 274 VTGGNDSTLKLWDLNG 289 (967)
T ss_pred EeeccCcchhhhhhhc
Confidence 9999999999999854
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.7e-08 Score=122.06 Aligned_cols=311 Identities=12% Similarity=0.060 Sum_probs=188.4
Q ss_pred CCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEE
Q 000268 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIA 334 (1757)
Q Consensus 255 G~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLa 334 (1757)
+.+|++++.+|.|..+|..+|+.+............++. ++..++.++.+|.|..+|..+|+.+...... +.+.+..
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCC
Confidence 568888889999999999999998776644332223332 4667888889999999999999988765432 2222111
Q ss_pred ecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCc
Q 000268 335 FSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDT 414 (1757)
Q Consensus 335 fSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG 414 (1757)
...+ . .++.++.+|.|..||..+|+.+.......+.... ... .+..+. + ..++++..+|
T Consensus 142 ~v~~-~---~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~-----------~~~----~sp~~~-~-~~v~~~~~~g 200 (377)
T TIGR03300 142 LVAN-G---LVVVRTNDGRLTALDAATGERLWTYSRVTPALTL-----------RGS----ASPVIA-D-GGVLVGFAGG 200 (377)
T ss_pred EEEC-C---EEEEECCCCeEEEEEcCCCceeeEEccCCCceee-----------cCC----CCCEEE-C-CEEEEECCCC
Confidence 1112 2 6777888999999999999876665321110000 000 011111 2 3677788889
Q ss_pred eEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEE
Q 000268 415 LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAI 494 (1757)
Q Consensus 415 ~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~ 494 (1757)
.+..+|+.++...-... .....+.. .+..+.. ........++.+++++.+|.+.
T Consensus 201 ~v~ald~~tG~~~W~~~----~~~~~g~~-~~~~~~~---------------------~~~~p~~~~~~vy~~~~~g~l~ 254 (377)
T TIGR03300 201 KLVALDLQTGQPLWEQR----VALPKGRT-ELERLVD---------------------VDGDPVVDGGQVYAVSYQGRVA 254 (377)
T ss_pred EEEEEEccCCCEeeeec----cccCCCCC-chhhhhc---------------------cCCccEEECCEEEEEEcCCEEE
Confidence 99999987653211000 00000000 0000000 0000111245788888999999
Q ss_pred EEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCce
Q 000268 495 IWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSL 574 (1757)
Q Consensus 495 IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkl 574 (1757)
.||..+++ ..|.... .....+ ..++..|++++.+|.|+.+|..+|+.
T Consensus 255 a~d~~tG~-----~~W~~~~--------------------------~~~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~ 301 (377)
T TIGR03300 255 ALDLRSGR-----VLWKRDA--------------------------SSYQGP--AVDDNRLYVTDADGVVVALDRRSGSE 301 (377)
T ss_pred EEECCCCc-----EEEeecc--------------------------CCccCc--eEeCCEEEEECCCCeEEEEECCCCcE
Confidence 99998754 2232110 001111 12466788888999999999999998
Q ss_pred EEEEeCCCC-CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEE
Q 000268 575 VHSLTGHTE-STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYIL 652 (1757)
Q Consensus 575 l~~L~gH~~-~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IW 652 (1757)
+........ ....... .+..|++++.+|.|.+||..+|+.+..+..+...+..--...++ .|++++.||.|+.|
T Consensus 302 ~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 302 LWKNDELKYRQLTAPAV---VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGD-GLLVQTRDGDLYAF 376 (377)
T ss_pred EEccccccCCccccCEE---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECC-EEEEEeCCceEEEe
Confidence 876532222 2222222 23466678899999999999999999988665444332222333 58888899999876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-08 Score=128.08 Aligned_cols=234 Identities=15% Similarity=0.052 Sum_probs=147.8
Q ss_pred CceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC---ceEEEEECCCCCceEEecCCCCceEEEEecCCCC
Q 000268 264 DRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND---CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPG 340 (1757)
Q Consensus 264 DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~D---GtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~ 340 (1757)
...|.++|... .....+..+...+.+.+|+|||++||.++.. ..|++|++.+++... +..+.+.+.+++|+|+++
T Consensus 169 ~~~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 169 RYELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGS 246 (417)
T ss_pred cceEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC
Confidence 34688888754 4445566677789999999999999887654 479999999886543 334556677899999987
Q ss_pred ceEEEEEEeCCC--cEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeC-Cc--e
Q 000268 341 SVYQLLSSSDDG--TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DT--L 415 (1757)
Q Consensus 341 ~~~~LaSgs~DG--tIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~-DG--~ 415 (1757)
. ++++.+.++ .|.+|++.++...... .+........|+|+|+.|+..+. .+ .
T Consensus 247 ~--l~~~~~~~~~~~i~~~d~~~~~~~~l~---------------------~~~~~~~~~~~s~dg~~l~~~s~~~g~~~ 303 (417)
T TIGR02800 247 K--LAVSLSKDGNPDIYVMDLDGKQLTRLT---------------------NGPGIDTEPSWSPDGKSIAFTSDRGGSPQ 303 (417)
T ss_pred E--EEEEECCCCCccEEEEECCCCCEEECC---------------------CCCCCCCCEEECCCCCEEEEEECCCCCce
Confidence 2 334455444 5888888776432111 01122345689999998876654 33 5
Q ss_pred EEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCC---e
Q 000268 416 ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG---S 492 (1757)
Q Consensus 416 IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DG---t 492 (1757)
|.++++.++ ....+..+...+..+.|+|++ ..|+.++.++ .
T Consensus 304 iy~~d~~~~----------~~~~l~~~~~~~~~~~~spdg--------------------------~~i~~~~~~~~~~~ 347 (417)
T TIGR02800 304 IYMMDADGG----------EVRRLTFRGGYNASPSWSPDG--------------------------DLIAFVHREGGGFN 347 (417)
T ss_pred EEEEECCCC----------CEEEeecCCCCccCeEECCCC--------------------------CEEEEEEccCCceE
Confidence 777776532 123344445566778888886 5666666654 6
Q ss_pred EEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCC---eEEEEEC
Q 000268 493 AIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC---RICVWNA 569 (1757)
Q Consensus 493 I~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG---~I~IWDl 569 (1757)
|.+||+.++.. ..+. ........+|+|||++|+.++.++ .+++.+.
T Consensus 348 i~~~d~~~~~~------------------------------~~l~-~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 348 IAVMDLDGGGE------------------------------RVLT-DTGLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred EEEEeCCCCCe------------------------------EEcc-CCCCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 78888765220 0000 111123457999999998877654 3555554
Q ss_pred CCCceEEEEeCCCCCeEEEEE
Q 000268 570 ADGSLVHSLTGHTESTYVLDV 590 (1757)
Q Consensus 570 ~tgkll~~L~gH~~~VtsLaf 590 (1757)
+|.....+..+.+.+..++|
T Consensus 397 -~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 397 -DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred -CCceeeECCCCCCCcCCCCC
Confidence 45556666555555555544
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-08 Score=126.22 Aligned_cols=417 Identities=11% Similarity=0.055 Sum_probs=238.4
Q ss_pred ccccceeEEEEccCCCCEEEEEECCCC------------CEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcC-
Q 000268 229 MVQKMQNIKRVRGHRNAVYCAIFDRSG------------RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSS- 295 (1757)
Q Consensus 229 ~~~~~k~l~tL~GH~~~V~~VaFSPDG------------~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSP- 295 (1757)
+..+.|.++.+.-|...|+.|.|.|-. -+||++...|.|.|||...+..+..+..|...|..++|-+
T Consensus 41 Ds~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~ 120 (1062)
T KOG1912|consen 41 DSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPA 120 (1062)
T ss_pred ehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeec
Confidence 445678889999999999999998732 2577888889999999999998888999999999999976
Q ss_pred --CC-CEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCC----cccee
Q 000268 296 --NN-ALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ----FSPRI 368 (1757)
Q Consensus 296 --Dg-~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~----~~~~i 368 (1757)
+. .+|++.....+|.+|+..+|..+...........|+.+.|-... .+..-+..|.|.+-+.-... ..+.+
T Consensus 121 rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~r--h~~~l~s~g~vl~~~~l~~sep~~pgk~~ 198 (1062)
T KOG1912|consen 121 RDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSR--HFCVLGSKGFVLSCKDLGLSEPDVPGKEF 198 (1062)
T ss_pred cCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcc--eEEEEccCceEEEEeccCCCCCCCCceeE
Confidence 33 36677777789999999999998888777777888999887542 55555566766665542211 11222
Q ss_pred ecCCCCcc--------ccCCCCCCCCCCCCCCcc---eEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCccee
Q 000268 369 YIPRPSDA--------VAGRNMAPSSSAGPQSHQ---IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEID 437 (1757)
Q Consensus 369 ~l~~~~~~--------~~g~~~~~~~~~~~~~~~---V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~ 437 (1757)
.+..+... ..+.. .......... ...++|+|.-+.++.......+.|+|+.- ...+.
T Consensus 199 qI~sd~Sdl~~lere~at~ns---~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~---------~~~l~ 266 (1062)
T KOG1912|consen 199 QITSDHSDLAHLERETATGNS---TTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEY---------ECCLA 266 (1062)
T ss_pred EEecCccchhhhhhhhhcccc---ccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchh---------hceeE
Confidence 22221110 00100 0000001111 22457788665555555667788999843 22333
Q ss_pred eecCCCCCceEEEEccCcccc---------ccccccCCC---C-----------------------CCCCcccccccC-C
Q 000268 438 VLSGHENDVNYVQFSGCAVAS---------RFSLADSSK---E-----------------------DSTPKFKNSWFC-H 481 (1757)
Q Consensus 438 ~l~gH~~~V~sLafSpdg~~s---------~~~~~~~~~---~-----------------------~~~~~~~~~~~~-~ 481 (1757)
...-..+.+.-+.+.|++.-. +.++..... . +..+........ .
T Consensus 267 vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~ 346 (1062)
T KOG1912|consen 267 VVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTP 346 (1062)
T ss_pred EEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCCh
Confidence 333344444455555543100 000000000 0 000000000000 1
Q ss_pred CcEEEEcCCCeEEEEeCCCCCCCcccccccccccc--cCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcC---------
Q 000268 482 DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHL--KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL--------- 550 (1757)
Q Consensus 482 ~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l--~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSP--------- 550 (1757)
..++.--.+|.+.+|.+.+++.+.....-...+.+ .....+.......-..+...-.|..+.++....|
T Consensus 347 sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~ 426 (1062)
T KOG1912|consen 347 SALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVEN 426 (1062)
T ss_pred hhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeec
Confidence 11222223444455555443322110000000000 0000000000000000001112333444333322
Q ss_pred --CC-------CEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEe----------CCCcEEEEe
Q 000268 551 --DN-------RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAG----------YDGKTIVWD 611 (1757)
Q Consensus 551 --DG-------~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs----------~DG~IrIWD 611 (1757)
.| .++|.|...|+|.|+|+.++.....+..|++.|.++.|-- ..-|++.+ .-+.+.|-|
T Consensus 427 ~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g--~sslvSfsys~~n~~sg~vrN~l~vtd 504 (1062)
T KOG1912|consen 427 DPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLG--NSSLVSFSYSHVNSASGGVRNDLVVTD 504 (1062)
T ss_pred CCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeecc--ceeEEEeeeccccccccceeeeEEEEE
Confidence 22 2678899999999999999999999999999999999964 33334433 234577889
Q ss_pred CCCCceEE--EEe-ecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc
Q 000268 612 IWEGIPIR--IYE-ISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 661 (1757)
Q Consensus 612 l~tg~~l~--~l~-~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~tGe~~~ 661 (1757)
+.+|.... .+. ....+|..+..|.-|+||+..-.+--+-+||+.+-.++.
T Consensus 505 LrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr 557 (1062)
T KOG1912|consen 505 LRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLR 557 (1062)
T ss_pred cccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHH
Confidence 99985443 222 234689999999999999999999999999997765543
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.8e-09 Score=119.74 Aligned_cols=119 Identities=19% Similarity=0.357 Sum_probs=93.5
Q ss_pred CCCCeeEEEEcCCCCEEEE--EecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeC---CCcEEEEeCC
Q 000268 539 TPRGVNMIVWSLDNRFVLA--AIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGY---DGKTIVWDIW 613 (1757)
Q Consensus 539 h~~~VtsVafSPDG~~LaS--Gs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~---DG~IrIWDl~ 613 (1757)
....|..++|+|+|..|++ |..++.|.|||+. ++.+..+. ...+..|.|+| ++++|++|+. .|.|.+||+.
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~ 133 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVR 133 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECC
Confidence 3456999999999998765 4467899999996 77777764 45678999999 6677777764 4679999999
Q ss_pred CCceEEEEeecCcceEEEEEcCCCCEEEEEe------CCCeEEEEECCCCccccccc
Q 000268 614 EGIPIRIYEISRFRLVDGKFSPDGASIILSD------DVGQLYILNTGQGESQKDAK 664 (1757)
Q Consensus 614 tg~~l~~l~~~~~~VtslafSPDGk~LAsgs------~DG~I~IWdl~tGe~~~~~~ 664 (1757)
+.+.+..+. +..++.++|||||++|+++. .|..+.||++ +|+.+....
T Consensus 134 ~~~~i~~~~--~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~~ 187 (194)
T PF08662_consen 134 KKKKISTFE--HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKKP 187 (194)
T ss_pred CCEEeeccc--cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEecc
Confidence 999888775 34578999999999999875 3789999998 466554433
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.8e-08 Score=112.44 Aligned_cols=239 Identities=10% Similarity=0.156 Sum_probs=161.1
Q ss_pred EEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCC--eEEEEEcCCCCEEE-EEeCC------ceEEEEECCC
Q 000268 246 VYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD--ITDLAVSSNNALVA-SASND------CIIRVWRLPD 316 (1757)
Q Consensus 246 V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~--VtsLafSPDg~lLA-SgS~D------GtIrVWDl~t 316 (1757)
...++|..|...+++|.++| .+||+++--+.......+.+. +.-|-|- .++|| +|+.+ ..|.|||=..
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEeccc
Confidence 34599999999999998777 799998764433333323332 2333332 33444 34333 4799999767
Q ss_pred CCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecC-CCCccceeecCCCCccccCCCCCCCCCCCCCCcce
Q 000268 317 GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR-YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 395 (1757)
Q Consensus 317 g~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~-tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V 395 (1757)
.+++..+. ...+|.+|.+.++ .|++.- .+.|.||... ..+.+..+.... ....+
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r~-----riVvvl-~~~I~VytF~~n~k~l~~~et~~------------------NPkGl 139 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRRD-----RIVVVL-ENKIYVYTFPDNPKLLHVIETRS------------------NPKGL 139 (346)
T ss_pred CcEEEEEE-eccceeeEEEcCC-----eEEEEe-cCeEEEEEcCCChhheeeeeccc------------------CCCce
Confidence 77777776 6789999999987 455444 4679999887 334333332111 11123
Q ss_pred EEEEECCCCCEEEE-eeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcc
Q 000268 396 FCCAFNANGTVFVT-GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 474 (1757)
Q Consensus 396 ~slafSpdG~~Las-Gs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~ 474 (1757)
.+++-..+..+||. |-.-|.|.|-|+..... .....+.+|...|.+++.+-.|
T Consensus 140 C~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~-------~~p~~I~AH~s~Iacv~Ln~~G------------------- 193 (346)
T KOG2111|consen 140 CSLCPTSNKSLLAFPGFKTGQVQIVDLASTKP-------NAPSIINAHDSDIACVALNLQG------------------- 193 (346)
T ss_pred EeecCCCCceEEEcCCCccceEEEEEhhhcCc-------CCceEEEcccCceeEEEEcCCc-------------------
Confidence 33333334455555 34569999999964221 1346788999999999999876
Q ss_pred cccccCCCcEEEEcCCCe-EEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCC
Q 000268 475 KNSWFCHDNIVTCSRDGS-AIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 553 (1757)
Q Consensus 475 ~~~~~~~~~LvSgS~DGt-I~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~ 553 (1757)
..+||+|..|+ |+|||..++....... --.....|.+++|||+..
T Consensus 194 -------t~vATaStkGTLIRIFdt~~g~~l~E~R---------------------------RG~d~A~iy~iaFSp~~s 239 (346)
T KOG2111|consen 194 -------TLVATASTKGTLIRIFDTEDGTLLQELR---------------------------RGVDRADIYCIAFSPNSS 239 (346)
T ss_pred -------cEEEEeccCcEEEEEEEcCCCcEeeeee---------------------------cCCchheEEEEEeCCCcc
Confidence 69999999998 6899999755322111 111335699999999999
Q ss_pred EEEEEecCCeEEEEECCCC
Q 000268 554 FVLAAIMDCRICVWNAADG 572 (1757)
Q Consensus 554 ~LaSGs~DG~I~IWDl~tg 572 (1757)
+|++++.-|+|+||.+...
T Consensus 240 ~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 240 WLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEEEcCCCeEEEEEeecC
Confidence 9999999999999998653
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.4e-09 Score=133.28 Aligned_cols=198 Identities=19% Similarity=0.244 Sum_probs=154.3
Q ss_pred CEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCC----eEEEEEcCCCCEEEEEeCCceEEEEECCCCCce
Q 000268 245 AVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD----ITDLAVSSNNALVASASNDCIIRVWRLPDGLPI 320 (1757)
Q Consensus 245 ~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~----VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l 320 (1757)
.|....+.-..+.++.++.+..+.|||...+..+..+...... ..-+.++++.-++++|+.-+.|.+|++.-...-
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p 168 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP 168 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc
Confidence 3444556667788999999999999999888777665533222 122335666679999999999999998733333
Q ss_pred EEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEE
Q 000268 321 SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 400 (1757)
Q Consensus 321 ~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slaf 400 (1757)
..+.||.+.|..+.|+-++. ++++.+.|.++++|++.+.+... ...-+|...|+.++|
T Consensus 169 ~~l~GHeG~iF~i~~s~dg~---~i~s~SdDRsiRlW~i~s~~~~~-------------------~~~fgHsaRvw~~~~ 226 (967)
T KOG0974|consen 169 IRLKGHEGSIFSIVTSLDGR---YIASVSDDRSIRLWPIDSREVLG-------------------CTGFGHSARVWACCF 226 (967)
T ss_pred ceecccCCceEEEEEccCCc---EEEEEecCcceeeeecccccccC-------------------cccccccceeEEEEe
Confidence 36889999999999999997 99999999999999999887544 123468999999999
Q ss_pred CCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCC-CceEEEEccCccccccccccCCCCCCCCccccccc
Q 000268 401 NANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEN-DVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWF 479 (1757)
Q Consensus 401 SpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~-~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~ 479 (1757)
.|+ .|++++.|-+.++|+.. ...+..+.+|.+ .+..++..+..
T Consensus 227 ~~n--~i~t~gedctcrvW~~~----------~~~l~~y~~h~g~~iw~~~~~~~~------------------------ 270 (967)
T KOG0974|consen 227 LPN--RIITVGEDCTCRVWGVN----------GTQLEVYDEHSGKGIWKIAVPIGV------------------------ 270 (967)
T ss_pred ccc--eeEEeccceEEEEEecc----------cceehhhhhhhhcceeEEEEcCCc------------------------
Confidence 998 89999999999999764 234446677765 47777777653
Q ss_pred CCCcEEEEcCCCeEEEEeCCCCC
Q 000268 480 CHDNIVTCSRDGSAIIWIPRSRR 502 (1757)
Q Consensus 480 ~~~~LvSgS~DGtI~IWDl~t~k 502 (1757)
..++|++.||.+++|++....
T Consensus 271 --~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 271 --IIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred --eEEEeeccCcchhhhhhhccc
Confidence 478999999999999988644
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.5e-08 Score=119.84 Aligned_cols=348 Identities=13% Similarity=0.203 Sum_probs=204.3
Q ss_pred eEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeC-----------CCcEEE
Q 000268 288 ITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD-----------DGTCRI 356 (1757)
Q Consensus 288 VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~-----------DGtIrI 356 (1757)
-+-+.|||-|.+|+|--..| |.+|--.+-..++.+. |. .|.-+.|||..+ +|+|-+. ...|+|
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~Ek---YLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEK---YLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccc---eEEEecCCccccCcccCCCceEEE
Confidence 46788999999999987765 8999866666666554 54 588899999987 8888653 257999
Q ss_pred EecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcce
Q 000268 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 436 (1757)
Q Consensus 357 WDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i 436 (1757)
||+.+|.....+.+.... ...-.-+.||.|++++|.-.. ..|.||+..+. ..+
T Consensus 287 WDI~tG~lkrsF~~~~~~-----------------~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf---------~ll 339 (698)
T KOG2314|consen 287 WDIATGLLKRSFPVIKSP-----------------YLKWPIFRWSHDDKYFARMTG-NSISIYETPSF---------MLL 339 (698)
T ss_pred EEccccchhcceeccCCC-----------------ccccceEEeccCCceeEEecc-ceEEEEecCce---------eee
Confidence 999999987776442110 111224679999999998765 56889987431 111
Q ss_pred eeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccc
Q 000268 437 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHL 516 (1757)
Q Consensus 437 ~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l 516 (1757)
..-.-.-..|....|+|.+ ..|..|-..+.......
T Consensus 340 d~Kslki~gIr~FswsP~~-----------------------------------~llAYwtpe~~~~parv--------- 375 (698)
T KOG2314|consen 340 DKKSLKISGIRDFSWSPTS-----------------------------------NLLAYWTPETNNIPARV--------- 375 (698)
T ss_pred cccccCCccccCcccCCCc-----------------------------------ceEEEEcccccCCcceE---------
Confidence 1112233456667788754 12234433332111000
Q ss_pred cCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEe----------cCCeEEEEECCCCceEEEEeCCCCCeE
Q 000268 517 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI----------MDCRICVWNAADGSLVHSLTGHTESTY 586 (1757)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs----------~DG~I~IWDl~tgkll~~L~gH~~~Vt 586 (1757)
...+.+....++....+.-.=..+-|-.+|.+|+.-. .=..+.|+.+.....--....-...|.
T Consensus 376 ------tL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi 449 (698)
T KOG2314|consen 376 ------TLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVI 449 (698)
T ss_pred ------EEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchhee
Confidence 0000111111111111222223456777787776522 112345555544332111122356788
Q ss_pred EEEEecCCCcEEEEEeCC--CcEEEEeCCC-C---ceEEEEeecCcceEEEEEcCCCCEEEEE---eCCCeEEEEECCCC
Q 000268 587 VLDVHPFNPRIAMSAGYD--GKTIVWDIWE-G---IPIRIYEISRFRLVDGKFSPDGASIILS---DDVGQLYILNTGQG 657 (1757)
Q Consensus 587 sLafSPdd~~lLaSgs~D--G~IrIWDl~t-g---~~l~~l~~~~~~VtslafSPDGk~LAsg---s~DG~I~IWdl~tG 657 (1757)
..+|-|.+.++.+..+.+ .++.+|.+.+ + .++..+. ......+.|+|.|+++|++ +..|.+.++|+.-.
T Consensus 450 ~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a 527 (698)
T KOG2314|consen 450 AFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYA 527 (698)
T ss_pred eeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchh
Confidence 999999888877666544 4688888763 2 3344443 2345678999999999976 55678888886421
Q ss_pred ccccccccceeecCCCccEEEccCCceeecccccccCcCCCCCcccCCCCCCCCCcchhhhhcccccccceEECCCCCeE
Q 000268 658 ESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKL 737 (1757)
Q Consensus 658 e~~~~~~~~~~fs~D~r~Li~d~~g~vlD~~tql~phl~~l~~~L~D~~~~p~p~~~Q~l~~~r~~~v~~lAfSPDG~~L 737 (1757)
.. . .+..+.| ..+..+.|.|.|+|+
T Consensus 528 ~~--------------k-------------~~~~~eh----------------------------~~at~veWDPtGRYv 552 (698)
T KOG2314|consen 528 DL--------------K-------------DTASPEH----------------------------FAATEVEWDPTGRYV 552 (698)
T ss_pred hh--------------h-------------hccCccc----------------------------cccccceECCCCCEE
Confidence 10 0 0111111 134568899999999
Q ss_pred EEee---CCCCCCceEeeccCCcccccCCCccccceeeeCCC
Q 000268 738 AVGP---DFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEPE 776 (1757)
Q Consensus 738 Avg~---d~s~~~~v~l~~l~~~~~l~~plp~~i~~~~~sPD 776 (1757)
.++. ....+..+++|.....- +-+..-+...++.|-|-
T Consensus 553 vT~ss~wrhk~d~GYri~tfqGrl-l~~~~i~~f~qF~WRPR 593 (698)
T KOG2314|consen 553 VTSSSSWRHKVDNGYRIFTFQGRL-LKEDIIDRFKQFLWRPR 593 (698)
T ss_pred EEeeehhhhccccceEEEEeecHH-HHHHHHHHHHhhccCCC
Confidence 9984 33457788999885332 22222233445677776
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.4e-09 Score=121.23 Aligned_cols=270 Identities=12% Similarity=0.094 Sum_probs=189.0
Q ss_pred CCEEEEEECCCCC--EEEEEcCCceEEEEecCCCeEEEE------EecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECC
Q 000268 244 NAVYCAIFDRSGR--YVITGSDDRLVKIWSMETAYCLAS------CRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP 315 (1757)
Q Consensus 244 ~~V~~VaFSPDG~--~LATGS~DGtIkIWDl~tg~~l~t------L~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~ 315 (1757)
..|..++|--+++ .|...+.+..+....+....+... .....+.|..++.. |+ .|++|-.+|.+.+|...
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k 133 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDK 133 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC-EEEEEecCCcEEEEecc
Confidence 4566777765543 455444666777777766554443 34556777777765 33 67788889999999988
Q ss_pred CCC----ceEEecCCCCceEEEEecCCCCceEEEEEEeCC--CcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCC
Q 000268 316 DGL----PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD--GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 389 (1757)
Q Consensus 316 tg~----~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~D--GtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~ 389 (1757)
.+. .+..+..+ ..+..|.-++... +.+++||.. ..+.|||+...+.+..-. +.......-
T Consensus 134 ~~d~hss~l~~la~g-~g~~~~r~~~~~p--~Iva~GGke~~n~lkiwdle~~~qiw~aK-----------NvpnD~L~L 199 (412)
T KOG3881|consen 134 SGDLHSSKLIKLATG-PGLYDVRQTDTDP--YIVATGGKENINELKIWDLEQSKQIWSAK-----------NVPNDRLGL 199 (412)
T ss_pred CCccccccceeeecC-CceeeeccCCCCC--ceEecCchhcccceeeeecccceeeeecc-----------CCCCccccc
Confidence 542 33344433 4566666666554 367779988 889999998874332221 111111111
Q ss_pred CCCcceEEEEECCC--CCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCC
Q 000268 390 PQSHQIFCCAFNAN--GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSK 467 (1757)
Q Consensus 390 ~~~~~V~slafSpd--G~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~ 467 (1757)
.-.-+++.+.|.+. ...||+++.-+.+++||.+.+ .+++..+...+..|+++...|.+
T Consensus 200 rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q--------RRPV~~fd~~E~~is~~~l~p~g------------ 259 (412)
T KOG3881|consen 200 RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ--------RRPVAQFDFLENPISSTGLTPSG------------ 259 (412)
T ss_pred eeeeeeccceecCCCCCceEEEEecceeEEEecCccc--------CcceeEeccccCcceeeeecCCC------------
Confidence 23446788999887 789999999999999999753 45677777788899999988876
Q ss_pred CCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEE
Q 000268 468 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 547 (1757)
Q Consensus 468 ~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVa 547 (1757)
+.+++|..-|.+..||+++++..+ ..+.+..+.|++|.
T Consensus 260 --------------n~Iy~gn~~g~l~~FD~r~~kl~g----------------------------~~~kg~tGsirsih 297 (412)
T KOG3881|consen 260 --------------NFIYTGNTKGQLAKFDLRGGKLLG----------------------------CGLKGITGSIRSIH 297 (412)
T ss_pred --------------cEEEEecccchhheecccCceeec----------------------------cccCCccCCcceEE
Confidence 689999999999999999755221 11345567899999
Q ss_pred EcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEec
Q 000268 548 WSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHP 592 (1757)
Q Consensus 548 fSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSP 592 (1757)
..|.+++|++++-|..|+|+|+.+.++++...- ...+++|.+.+
T Consensus 298 ~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~~~ 341 (412)
T KOG3881|consen 298 CHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFILLRD 341 (412)
T ss_pred EcCCCceEEeeccceeEEEeecccchhhhhhhh-hccccEEEecC
Confidence 999999999999999999999999777664331 22345565544
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.3e-07 Score=114.51 Aligned_cols=277 Identities=12% Similarity=0.086 Sum_probs=168.9
Q ss_pred ceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEe---------CCCcEEEEecCCCCccceeecCCCCccc
Q 000268 307 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS---------DDGTCRIWDARYSQFSPRIYIPRPSDAV 377 (1757)
Q Consensus 307 GtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs---------~DGtIrIWDl~tg~~~~~i~l~~~~~~~ 377 (1757)
+.|.|.|..+++.+..+.....+- .+ ++||++. +.++.+ .+..|.+||+.+.+.+..+.++......
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~--lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSF--FAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCE--EEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence 799999999999888886443333 34 9999872 334444 5789999999999988887653221100
Q ss_pred cCCCCCCCCCCCCCCcceEEEEECCCCCEEEEee-C-CceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCc
Q 000268 378 AGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS-S-DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCA 455 (1757)
Q Consensus 378 ~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs-~-DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg 455 (1757)
.......++++|||++|++.. . +..|.|+|+.+.+ .+..+.- .+...-...+.
T Consensus 103 -------------~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k---------vv~ei~v-p~~~~vy~t~e-- 157 (352)
T TIGR02658 103 -------------VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKA---------FVRMMDV-PDCYHIFPTAN-- 157 (352)
T ss_pred -------------ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCc---------EEEEEeC-CCCcEEEEecC--
Confidence 122345789999999988765 4 7899999997643 2322221 11111111111
Q ss_pred cccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCcee
Q 000268 456 VASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR 535 (1757)
Q Consensus 456 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~ 535 (1757)
..+.+-+.||......+.+... .. ..... .. .. ....
T Consensus 158 --------------------------~~~~~~~~Dg~~~~v~~d~~g~---~~--~~~~~-------vf----~~-~~~~ 194 (352)
T TIGR02658 158 --------------------------DTFFMHCRDGSLAKVGYGTKGN---PK--IKPTE-------VF----HP-EDEY 194 (352)
T ss_pred --------------------------CccEEEeecCceEEEEecCCCc---eE--Eeeee-------ee----cC-Cccc
Confidence 1222333444444433322100 00 00000 00 00 0000
Q ss_pred ecCCCCCeeEEEEcC-CCCEEEEEecCCeEEEEECCC-----CceEEEEeC-------CCCCeEEEEEecCCCcEEEEE-
Q 000268 536 ILPTPRGVNMIVWSL-DNRFVLAAIMDCRICVWNAAD-----GSLVHSLTG-------HTESTYVLDVHPFNPRIAMSA- 601 (1757)
Q Consensus 536 l~~h~~~VtsVafSP-DG~~LaSGs~DG~I~IWDl~t-----gkll~~L~g-------H~~~VtsLafSPdd~~lLaSg- 601 (1757)
+. ..+ .|++ +|+++.+... |.|.+.|+.. .+.+..+.. ..+.+.-++++|+++++++..
T Consensus 195 v~--~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~ 267 (352)
T TIGR02658 195 LI--NHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLAD 267 (352)
T ss_pred cc--cCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEec
Confidence 00 111 3455 8888877776 9999999643 333333221 233455699999777766643
Q ss_pred e--------CCCcEEEEeCCCCceEEEEeecCcceEEEEEcCCCC-EEEEEe-CCCeEEEEECCCCcccccc
Q 000268 602 G--------YDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGA-SIILSD-DVGQLYILNTGQGESQKDA 663 (1757)
Q Consensus 602 s--------~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk-~LAsgs-~DG~I~IWdl~tGe~~~~~ 663 (1757)
+ ..+.|.++|..+++.+..+..+ ..+..++|+|||+ +|++.. .++.|.++|+.+++.++.+
T Consensus 268 ~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 268 QRAKWTHKTASRFLFVVDAKTGKRLRKIELG-HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCccccccCCCCEEEEEECCCCeEEEEEeCC-CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 1 2257999999999999998854 4788999999999 777665 5788999999999887654
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.7e-08 Score=117.14 Aligned_cols=313 Identities=16% Similarity=0.205 Sum_probs=206.5
Q ss_pred ccccceeEEEEccCCCCEEEEEECCCCCEEEEEcCCc---------------eEEEEecCCCeEEEEEecCCCC--eE-E
Q 000268 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDR---------------LVKIWSMETAYCLASCRGHEGD--IT-D 290 (1757)
Q Consensus 229 ~~~~~k~l~tL~GH~~~V~~VaFSPDG~~LATGS~DG---------------tIkIWDl~tg~~l~tL~gH~~~--Vt-s 290 (1757)
....+..+.++. ...|.-+.|||.++||.|=+..+ .+.|||+.+|.++..+.+.... .+ -
T Consensus 59 ~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~ 136 (561)
T COG5354 59 GGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPV 136 (561)
T ss_pred cccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccce
Confidence 333344444454 25699999999999999865433 4999999999999999876665 55 7
Q ss_pred EEEcCCCCEEEEEeCCceEEEEECCCCC----ceEEecCCCCceEEEEecCCCCceEEEEE-----EeCCCcEEEEecCC
Q 000268 291 LAVSSNNALVASASNDCIIRVWRLPDGL----PISVLRGHTAAVTAIAFSPRPGSVYQLLS-----SSDDGTCRIWDARY 361 (1757)
Q Consensus 291 LafSPDg~lLASgS~DGtIrVWDl~tg~----~l~~l~gH~~~VtsLafSPdg~~~~~LaS-----gs~DGtIrIWDl~t 361 (1757)
+.|+.+..++|-. ....+.|+++ ++. +.+.++ ...|....|+|.++.. .|+. .+..+++++|.+..
T Consensus 137 ~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~-~la~~tPEk~~kpa~~~i~sIp~ 211 (561)
T COG5354 137 LKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHD-ELAYWTPEKLNKPAMVRILSIPK 211 (561)
T ss_pred eeeeecchhhhhh-ccCeEEEEec-CCccccCchhhcc--ccceeeEEecCCCCCc-eEEEEccccCCCCcEEEEEEccC
Confidence 7899988877755 3447999997 432 222222 3567888999975432 3332 46678899998876
Q ss_pred CCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEee-----------CCceEEEecCCCCCCCCCC
Q 000268 362 SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS-----------SDTLARVWNACKPNTDDSD 430 (1757)
Q Consensus 362 g~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs-----------~DG~IrVWDl~t~~~~~s~ 430 (1757)
+..+....+ ....-..+.|.+.|.+|++-. ....+.|+++..
T Consensus 212 ~s~l~tk~l--------------------fk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e------- 264 (561)
T COG5354 212 NSVLVTKNL--------------------FKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE------- 264 (561)
T ss_pred CCeeeeeee--------------------EeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc-------
Confidence 554443321 111123567888887665431 124577787742
Q ss_pred CCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCc--EEEEcCCCeEEEEeCCCCCCCcccc
Q 000268 431 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSHPKAA 508 (1757)
Q Consensus 431 ~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~--LvSgS~DGtI~IWDl~t~k~~~~~~ 508 (1757)
..+.......++|...+|.|.+ +. +++|-.+-.+.++|++..-
T Consensus 265 ---~~i~V~~~~~~pVhdf~W~p~S--------------------------~~F~vi~g~~pa~~s~~~lr~Nl------ 309 (561)
T COG5354 265 ---RSIPVEKDLKDPVHDFTWEPLS--------------------------SRFAVISGYMPASVSVFDLRGNL------ 309 (561)
T ss_pred ---cccceeccccccceeeeecccC--------------------------CceeEEecccccceeecccccce------
Confidence 1223333568899999999876 33 3445678888888887421
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecC---CeEEEEECCCCceEE-EEeCCCCC
Q 000268 509 RWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAADGSLVH-SLTGHTES 584 (1757)
Q Consensus 509 ~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~D---G~I~IWDl~tgkll~-~L~gH~~~ 584 (1757)
+.......-+.+.|||.++++++++-| |.|.+||......+. .+.+...
T Consensus 310 --------------------------~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~- 362 (561)
T COG5354 310 --------------------------RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNT- 362 (561)
T ss_pred --------------------------EEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCc-
Confidence 112223334567899999999997765 679999987654443 6665443
Q ss_pred eEEEEEecCCCcEEEEEe------CCCcEEEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCCC
Q 000268 585 TYVLDVHPFNPRIAMSAG------YDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVG 647 (1757)
Q Consensus 585 VtsLafSPdd~~lLaSgs------~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG 647 (1757)
.-+.|+| ++.++.+.. .|..|+|||+. |..+. ..+.+.|.|.|++.-+.+..+
T Consensus 363 -s~~~wsp-d~qF~~~~~ts~k~~~Dn~i~l~~v~-g~~~f-------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 363 -SYCDWSP-DGQFYDTDTTSEKLRVDNSIKLWDVY-GAKVF-------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred -eEeeccC-CceEEEecCCCcccccCcceEEEEec-Cchhh-------hhhhccccCCcccceeeccCC
Confidence 4568999 566555543 47889999993 33222 566788999998887766644
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.6e-09 Score=116.78 Aligned_cols=148 Identities=19% Similarity=0.281 Sum_probs=106.9
Q ss_pred EEEEECCCCCEEEEEcC----------CceEEEEecC-CCeEEEEEec-CCCCeEEEEEcCCCCEEEEE--eCCceEEEE
Q 000268 247 YCAIFDRSGRYVITGSD----------DRLVKIWSME-TAYCLASCRG-HEGDITDLAVSSNNALVASA--SNDCIIRVW 312 (1757)
Q Consensus 247 ~~VaFSPDG~~LATGS~----------DGtIkIWDl~-tg~~l~tL~g-H~~~VtsLafSPDg~lLASg--S~DGtIrVW 312 (1757)
..+.|+++|++|+.-.. -|...||-+. .+..+..+.- ..+.|.+++|+|+|+.+|+. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 35679999988775432 2345555552 2334444442 44579999999999987654 456799999
Q ss_pred ECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeC---CCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCC
Q 000268 313 RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD---DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 389 (1757)
Q Consensus 313 Dl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~---DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~ 389 (1757)
|++ ++.+..+. ...+..|.|+|+|+ +|++++. .|.|.+||+.+.+.+...
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~---~l~~~g~~n~~G~l~~wd~~~~~~i~~~--------------------- 141 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGR---FLVLAGFGNLNGDLEFWDVRKKKKISTF--------------------- 141 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCC---EEEEEEccCCCcEEEEEECCCCEEeecc---------------------
Confidence 996 66666664 56788999999998 7777764 467999999966654333
Q ss_pred CCCcceEEEEECCCCCEEEEeeC------CceEEEecCC
Q 000268 390 PQSHQIFCCAFNANGTVFVTGSS------DTLARVWNAC 422 (1757)
Q Consensus 390 ~~~~~V~slafSpdG~~LasGs~------DG~IrVWDl~ 422 (1757)
....+..++|+|+|++|+++.. |+.++||+..
T Consensus 142 -~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 142 -EHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred -ccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 1234789999999999999874 6788999984
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.03 E-value=4e-08 Score=118.19 Aligned_cols=315 Identities=11% Similarity=0.122 Sum_probs=190.7
Q ss_pred EEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC-----------CceEEEEEC
Q 000268 246 VYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN-----------DCIIRVWRL 314 (1757)
Q Consensus 246 V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~-----------DGtIrVWDl 314 (1757)
-+-+.|||-|.||+|--.-| |.+|--.+...++.+. |. .|.-+.|||+.++|+|-+. ...++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 46688999999999987766 8999877666666654 54 5899999999999998653 257999999
Q ss_pred CCCCceEEecC--CCCceE-EEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCC
Q 000268 315 PDGLPISVLRG--HTAAVT-AIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQ 391 (1757)
Q Consensus 315 ~tg~~l~~l~g--H~~~Vt-sLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~ 391 (1757)
.+|...+.+.. ....++ -..||.|++ ++|.-.. ..|.||+...-.++.... -.
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdK---y~Arm~~-~sisIyEtpsf~lld~Ks--------------------lk 345 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDK---YFARMTG-NSISIYETPSFMLLDKKS--------------------LK 345 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCc---eeEEecc-ceEEEEecCceeeecccc--------------------cC
Confidence 99998888765 223333 357999987 7776666 458999876533221111 12
Q ss_pred CcceEEEEECCCCCEEEEeeCC-----ceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCC
Q 000268 392 SHQIFCCAFNANGTVFVTGSSD-----TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSS 466 (1757)
Q Consensus 392 ~~~V~slafSpdG~~LasGs~D-----G~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~ 466 (1757)
-..|....|+|.+++||--... ..+.+..+-+ .+.++...-|.-.-..+.|-.+|
T Consensus 346 i~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs---------~~~iRt~nlfnVsDckLhWQk~g----------- 405 (698)
T KOG2314|consen 346 ISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPS---------KREIRTKNLFNVSDCKLHWQKSG----------- 405 (698)
T ss_pred CccccCcccCCCcceEEEEcccccCCcceEEEEecCc---------cceeeeccceeeeccEEEeccCC-----------
Confidence 3347788899998777642211 1222222211 11121111111111112222222
Q ss_pred CCCCCCcccccccCCCcEEEE----------cCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceee
Q 000268 467 KEDSTPKFKNSWFCHDNIVTC----------SRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI 536 (1757)
Q Consensus 467 ~~~~~~~~~~~~~~~~~LvSg----------S~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l 536 (1757)
++|+.- +.-..+-|+.++... .....
T Consensus 406 ---------------dyLcvkvdR~tK~~~~g~f~n~eIfrireKd-----------------------------Ipve~ 441 (698)
T KOG2314|consen 406 ---------------DYLCVKVDRHTKSKVKGQFSNLEIFRIREKD-----------------------------IPVEV 441 (698)
T ss_pred ---------------cEEEEEEEeeccccccceEeeEEEEEeeccC-----------------------------CCcee
Confidence 222211 111123333333211 00112
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEec---CCeEEEEECCC----CceEEEEeCCCCCeEEEEEecCCCcEEEEE---eCCCc
Q 000268 537 LPTPRGVNMIVWSLDNRFVLAAIM---DCRICVWNAAD----GSLVHSLTGHTESTYVLDVHPFNPRIAMSA---GYDGK 606 (1757)
Q Consensus 537 ~~h~~~VtsVafSPDG~~LaSGs~---DG~I~IWDl~t----gkll~~L~gH~~~VtsLafSPdd~~lLaSg---s~DG~ 606 (1757)
......|...+|-|.|..+++-+. ..++.+|.+.+ .+++..|.. ...+.|.|+| .|++++.+ |..|.
T Consensus 442 velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsP-kG~fvvva~l~s~~g~ 518 (698)
T KOG2314|consen 442 VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSP-KGRFVVVAALVSRRGD 518 (698)
T ss_pred eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcC-CCcEEEEEEecccccc
Confidence 234456889999999998877553 34688887763 234445543 3457899999 45555443 45789
Q ss_pred EEEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeC------CCeEEEEEC
Q 000268 607 TIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDD------VGQLYILNT 654 (1757)
Q Consensus 607 IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~------DG~I~IWdl 654 (1757)
+.++|..-..+..+-...+...+.+.|.|.|+|+++++. |..-+||++
T Consensus 519 l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tf 572 (698)
T KOG2314|consen 519 LEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTF 572 (698)
T ss_pred eEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEe
Confidence 999999754444443344567788999999999998855 334555555
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.8e-08 Score=123.72 Aligned_cols=235 Identities=13% Similarity=0.012 Sum_probs=142.9
Q ss_pred ceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC---ceEEEEECCCCCceEEecCCCCceEEEEecCCCCc
Q 000268 265 RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND---CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS 341 (1757)
Q Consensus 265 GtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~D---GtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~ 341 (1757)
..|.++|..... .+.+..+...+.+..|+|||+.|+..+.+ ..|.+||+.+++... +....+.....+|+||++
T Consensus 198 ~~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~- 274 (448)
T PRK04792 198 YQLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGK- 274 (448)
T ss_pred eEEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCC-
Confidence 367778875443 34555677789999999999988876543 368899998886533 222233445789999997
Q ss_pred eEEEEEEeCCCc--EEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeC-Cc--eE
Q 000268 342 VYQLLSSSDDGT--CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DT--LA 416 (1757)
Q Consensus 342 ~~~LaSgs~DGt--IrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~-DG--~I 416 (1757)
.++++.+.+|. |.+||+.+++... +. .+.......+|+|||+.|+..+. ++ .|
T Consensus 275 -~La~~~~~~g~~~Iy~~dl~tg~~~~-lt--------------------~~~~~~~~p~wSpDG~~I~f~s~~~g~~~I 332 (448)
T PRK04792 275 -KLALVLSKDGQPEIYVVDIATKALTR-IT--------------------RHRAIDTEPSWHPDGKSLIFTSERGGKPQI 332 (448)
T ss_pred -EEEEEEeCCCCeEEEEEECCCCCeEE-Cc--------------------cCCCCccceEECCCCCEEEEEECCCCCceE
Confidence 23345566675 6777887665321 10 11223456789999998876654 34 45
Q ss_pred EEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEE-cCCCe--E
Q 000268 417 RVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC-SRDGS--A 493 (1757)
Q Consensus 417 rVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSg-S~DGt--I 493 (1757)
.++++.++. ...+...........|+|++ +.|+.. ..++. |
T Consensus 333 y~~dl~~g~----------~~~Lt~~g~~~~~~~~SpDG--------------------------~~l~~~~~~~g~~~I 376 (448)
T PRK04792 333 YRVNLASGK----------VSRLTFEGEQNLGGSITPDG--------------------------RSMIMVNRTNGKFNI 376 (448)
T ss_pred EEEECCCCC----------EEEEecCCCCCcCeeECCCC--------------------------CEEEEEEecCCceEE
Confidence 666664321 12222122223456788886 344443 33444 4
Q ss_pred EEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecC-C--eEEEEECC
Q 000268 494 IIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD-C--RICVWNAA 570 (1757)
Q Consensus 494 ~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~D-G--~I~IWDl~ 570 (1757)
.++|+.++.. ..+... .......|+|||++|+..+.+ + .|++++.
T Consensus 377 ~~~dl~~g~~------------------------------~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~- 424 (448)
T PRK04792 377 ARQDLETGAM------------------------------QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI- 424 (448)
T ss_pred EEEECCCCCe------------------------------EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-
Confidence 4456554220 000000 011234799999998876643 3 3778886
Q ss_pred CCceEEEEeCCCCCeEEEEEec
Q 000268 571 DGSLVHSLTGHTESTYVLDVHP 592 (1757)
Q Consensus 571 tgkll~~L~gH~~~VtsLafSP 592 (1757)
+|.....+..+.+.+...+|+|
T Consensus 425 ~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 425 DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCCceEECcCCCCCcCCCccCC
Confidence 6777777877777788889988
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.7e-08 Score=122.57 Aligned_cols=233 Identities=14% Similarity=0.038 Sum_probs=145.3
Q ss_pred eEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC---ceEEEEECCCCCceEEecCCCCceEEEEecCCCCce
Q 000268 266 LVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND---CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSV 342 (1757)
Q Consensus 266 tIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~D---GtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~ 342 (1757)
.|.++|...+. .+.+..+...+...+|+|||+.|+..+.+ ..|.+|++.++.... +....+.+...+|+|+++
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~-- 255 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGS-- 255 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCC--
Confidence 58888887554 45555677889999999999999876643 469999998886543 333344566789999987
Q ss_pred EEEE-EEeCCC--cEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeC-Cc--eE
Q 000268 343 YQLL-SSSDDG--TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DT--LA 416 (1757)
Q Consensus 343 ~~La-Sgs~DG--tIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~-DG--~I 416 (1757)
.|+ +...+| .|.+||+.++.... +. .+........|+|||+.|+..+. +| .|
T Consensus 256 -~la~~~~~~g~~~Iy~~d~~~~~~~~-lt--------------------~~~~~~~~~~~spDg~~i~f~s~~~g~~~i 313 (430)
T PRK00178 256 -KLAFVLSKDGNPEIYVMDLASRQLSR-VT--------------------NHPAIDTEPFWGKDGRTLYFTSDRGGKPQI 313 (430)
T ss_pred -EEEEEEccCCCceEEEEECCCCCeEE-cc--------------------cCCCCcCCeEECCCCCEEEEEECCCCCceE
Confidence 444 555555 57788988765321 11 01122445789999998876654 33 56
Q ss_pred EEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcC-CC--eE
Q 000268 417 RVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR-DG--SA 493 (1757)
Q Consensus 417 rVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~-DG--tI 493 (1757)
.++++.++.. ..+...........|+|++ +.|+..+. ++ .|
T Consensus 314 y~~d~~~g~~----------~~lt~~~~~~~~~~~Spdg--------------------------~~i~~~~~~~~~~~l 357 (430)
T PRK00178 314 YKVNVNGGRA----------ERVTFVGNYNARPRLSADG--------------------------KTLVMVHRQDGNFHV 357 (430)
T ss_pred EEEECCCCCE----------EEeecCCCCccceEECCCC--------------------------CEEEEEEccCCceEE
Confidence 6777654321 1111111223456788876 45544433 33 47
Q ss_pred EEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecC---CeEEEEECC
Q 000268 494 IIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAA 570 (1757)
Q Consensus 494 ~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~D---G~I~IWDl~ 570 (1757)
.+||+.++.. ..+. .........|+|||++|+..+.+ ..|+++++
T Consensus 358 ~~~dl~tg~~------------------------------~~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~- 405 (430)
T PRK00178 358 AAQDLQRGSV------------------------------RILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSI- 405 (430)
T ss_pred EEEECCCCCE------------------------------EEcc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC-
Confidence 7788775321 0000 11111235799999999887654 35778887
Q ss_pred CCceEEEEeCCCCCeEEEEEec
Q 000268 571 DGSLVHSLTGHTESTYVLDVHP 592 (1757)
Q Consensus 571 tgkll~~L~gH~~~VtsLafSP 592 (1757)
.|.....+..+.+.+...+|+|
T Consensus 406 ~g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 406 NGRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred CCCceEECcCCCCCcCCCccCC
Confidence 4555556666667778888887
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.3e-08 Score=121.37 Aligned_cols=233 Identities=14% Similarity=0.049 Sum_probs=141.4
Q ss_pred ceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCC---CcEEEEecCCCCccceeecCCCCccccCCCCC
Q 000268 307 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD---GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMA 383 (1757)
Q Consensus 307 GtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~D---GtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~ 383 (1757)
..|.++|... .....+..+...+...+|+|+++ +|+.+... ..|.+||+.++......
T Consensus 170 ~~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~---~la~~~~~~~~~~i~v~d~~~g~~~~~~--------------- 230 (417)
T TIGR02800 170 YELQVADYDG-ANPQTITRSREPILSPAWSPDGQ---KLAYVSFESGKPEIYVQDLATGQREKVA--------------- 230 (417)
T ss_pred ceEEEEcCCC-CCCEEeecCCCceecccCCCCCC---EEEEEEcCCCCcEEEEEECCCCCEEEee---------------
Confidence 3688888754 44455656777899999999998 66655543 47999999887532211
Q ss_pred CCCCCCCCCcceEEEEECCCCCEEEEe-eCCc--eEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccc
Q 000268 384 PSSSAGPQSHQIFCCAFNANGTVFVTG-SSDT--LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 460 (1757)
Q Consensus 384 ~~~~~~~~~~~V~slafSpdG~~LasG-s~DG--~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~ 460 (1757)
.....+.+++|+|||+.|+.. +.++ .|++|++.++. ...+..+........|+|++
T Consensus 231 ------~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~----------~~~l~~~~~~~~~~~~s~dg----- 289 (417)
T TIGR02800 231 ------SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ----------LTRLTNGPGIDTEPSWSPDG----- 289 (417)
T ss_pred ------cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC----------EEECCCCCCCCCCEEECCCC-----
Confidence 112335568999999877654 4343 58888886432 23334444445567888876
Q ss_pred ccccCCCCCCCCcccccccCCCcEEEEc-CCC--eEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeec
Q 000268 461 SLADSSKEDSTPKFKNSWFCHDNIVTCS-RDG--SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL 537 (1757)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~LvSgS-~DG--tI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~ 537 (1757)
..|+.++ ..| .|.+|++.+++ ...+.
T Consensus 290 ---------------------~~l~~~s~~~g~~~iy~~d~~~~~------------------------------~~~l~ 318 (417)
T TIGR02800 290 ---------------------KSIAFTSDRGGSPQIYMMDADGGE------------------------------VRRLT 318 (417)
T ss_pred ---------------------CEEEEEECCCCCceEEEEECCCCC------------------------------EEEee
Confidence 4555443 344 46666655321 11222
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecCC---eEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEeC
Q 000268 538 PTPRGVNMIVWSLDNRFVLAAIMDC---RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDG--KTIVWDI 612 (1757)
Q Consensus 538 ~h~~~VtsVafSPDG~~LaSGs~DG---~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG--~IrIWDl 612 (1757)
.+...+..++|+|+|++|+.++.++ .|.+||+.++... .+..+ .......|+|++..++++...++ .+.+.+.
T Consensus 319 ~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 319 FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 2334566789999999999988776 8999999876543 33322 23455689995555555444443 3455554
Q ss_pred CCCceEEEEeecCcceEEEEE
Q 000268 613 WEGIPIRIYEISRFRLVDGKF 633 (1757)
Q Consensus 613 ~tg~~l~~l~~~~~~Vtslaf 633 (1757)
+|.....+..+.+.+..++|
T Consensus 397 -~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 397 -DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred -CCceeeECCCCCCCcCCCCC
Confidence 45555555433444444444
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-06 Score=107.60 Aligned_cols=317 Identities=14% Similarity=0.118 Sum_probs=183.8
Q ss_pred EEEEcCC----ceEEEEec--CCCeEEEEE-ecCCCCeEEEEEcCCCCEEEEEeC----CceEEEEECCCC--C--ceEE
Q 000268 258 VITGSDD----RLVKIWSM--ETAYCLASC-RGHEGDITDLAVSSNNALVASASN----DCIIRVWRLPDG--L--PISV 322 (1757)
Q Consensus 258 LATGS~D----GtIkIWDl--~tg~~l~tL-~gH~~~VtsLafSPDg~lLASgS~----DGtIrVWDl~tg--~--~l~~ 322 (1757)
++.|+.. +.|.+|.+ .++++...- ..-......|+++|++++|.++.. .+.|..|.+... . .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 3445544 68888887 555543221 123456678899999999988876 579999988653 2 2333
Q ss_pred ecCCCCceEEEEecCCCCceEEEEEE-eCCCcEEEEecCC-CCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEE
Q 000268 323 LRGHTAAVTAIAFSPRPGSVYQLLSS-SDDGTCRIWDARY-SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 400 (1757)
Q Consensus 323 l~gH~~~VtsLafSPdg~~~~~LaSg-s~DGtIrIWDl~t-g~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slaf 400 (1757)
..........++++|++. +|+++ ..+|.|.++++.. +.+.......... +.. ..........+.++.|
T Consensus 82 ~~~~g~~p~~i~~~~~g~---~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~----g~g---~~~~rq~~~h~H~v~~ 151 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGR---FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHE----GSG---PNPDRQEGPHPHQVVF 151 (345)
T ss_dssp EEESSSCEEEEEECTTSS---EEEEEETTTTEEEEEEECTTSEEEEEEEEEESE----EEE---SSTTTTSSTCEEEEEE
T ss_pred eccCCCCcEEEEEecCCC---EEEEEEccCCeEEEEEccCCcccceeeeecccC----CCC---CcccccccccceeEEE
Confidence 332345566799999987 55555 4689999999987 3333221110000 000 0001122344788999
Q ss_pred CCCCCEEEEeeC-CceEEEecCCCCCCCCCCCCCcceeeec-CCCCCceEEEEccCccccccccccCCCCCCCCcccccc
Q 000268 401 NANGTVFVTGSS-DTLARVWNACKPNTDDSDQPNHEIDVLS-GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478 (1757)
Q Consensus 401 SpdG~~LasGs~-DG~IrVWDl~t~~~~~s~~~~~~i~~l~-gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~ 478 (1757)
+|+|+++++... ...|.+|++...... ......+. .....-..+.|+|++
T Consensus 152 ~pdg~~v~v~dlG~D~v~~~~~~~~~~~-----l~~~~~~~~~~G~GPRh~~f~pdg----------------------- 203 (345)
T PF10282_consen 152 SPDGRFVYVPDLGADRVYVYDIDDDTGK-----LTPVDSIKVPPGSGPRHLAFSPDG----------------------- 203 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEE-TTS-T-----EEEEEEEECSTTSSEEEEEE-TTS-----------------------
T ss_pred CCCCCEEEEEecCCCEEEEEEEeCCCce-----EEEeeccccccCCCCcEEEEcCCc-----------------------
Confidence 999998877643 457999998643210 11111221 233446788899886
Q ss_pred cCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEE
Q 000268 479 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA 558 (1757)
Q Consensus 479 ~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSG 558 (1757)
...+++.-.+++|.++++..... .+.....+...+. -.........|+++|||++|+++
T Consensus 204 --~~~Yv~~e~s~~v~v~~~~~~~g-----~~~~~~~~~~~~~--------------~~~~~~~~~~i~ispdg~~lyvs 262 (345)
T PF10282_consen 204 --KYAYVVNELSNTVSVFDYDPSDG-----SLTEIQTISTLPE--------------GFTGENAPAEIAISPDGRFLYVS 262 (345)
T ss_dssp --SEEEEEETTTTEEEEEEEETTTT-----EEEEEEEEESCET--------------TSCSSSSEEEEEE-TTSSEEEEE
T ss_pred --CEEEEecCCCCcEEEEeecccCC-----ceeEEEEeeeccc--------------cccccCCceeEEEecCCCEEEEE
Confidence 23456677789999998873221 1111111100000 00011257789999999998775
Q ss_pred e-cCCeEEEEEC--CCCce--EEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC--CCCceEEEEe-ecCcceEE
Q 000268 559 I-MDCRICVWNA--ADGSL--VHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI--WEGIPIRIYE-ISRFRLVD 630 (1757)
Q Consensus 559 s-~DG~I~IWDl--~tgkl--l~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl--~tg~~l~~l~-~~~~~Vts 630 (1757)
. ..+.|.+|++ .+|++ +..+.........++++|++..++++.-.++.|.+|++ .+|.+...-. ..-....|
T Consensus 263 nr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~c 342 (345)
T PF10282_consen 263 NRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVC 342 (345)
T ss_dssp ECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEE
T ss_pred eccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEE
Confidence 5 5678999998 33443 33444334457899999955555555557789999976 5676655442 23345566
Q ss_pred EEE
Q 000268 631 GKF 633 (1757)
Q Consensus 631 laf 633 (1757)
+.|
T Consensus 343 i~f 345 (345)
T PF10282_consen 343 IVF 345 (345)
T ss_dssp EEE
T ss_pred EeC
Confidence 665
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.4e-07 Score=118.84 Aligned_cols=249 Identities=13% Similarity=0.051 Sum_probs=148.2
Q ss_pred ceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCC--cEEEEecCCCCccceeecCCCCccccCCCCCC
Q 000268 307 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDG--TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 384 (1757)
Q Consensus 307 GtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DG--tIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~ 384 (1757)
..|.+.|...+.. +.+......+.+-+|+|||+...++++...+| .|.+.++.++.......
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~--------------- 228 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA--------------- 228 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec---------------
Confidence 4677778765544 44554556677889999987432333444444 47777887765322211
Q ss_pred CCCCCCCCcceEEEEECCCCCEEEEeeC-----CceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccc
Q 000268 385 SSSAGPQSHQIFCCAFNANGTVFVTGSS-----DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASR 459 (1757)
Q Consensus 385 ~~~~~~~~~~V~slafSpdG~~LasGs~-----DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~ 459 (1757)
..+.....+|+|||+.||..+. +..+.+|++..+.. +.......++.......+|+|+|
T Consensus 229 ------~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~------g~~~~lt~~~~~~~~~p~wSPDG---- 292 (428)
T PRK01029 229 ------LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI------GKPRRLLNEAFGTQGNPSFSPDG---- 292 (428)
T ss_pred ------CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCC------CcceEeecCCCCCcCCeEECCCC----
Confidence 1222345789999998887553 22344466643210 11122222233345678999987
Q ss_pred cccccCCCCCCCCcccccccCCCcEEEE-cCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecC
Q 000268 460 FSLADSSKEDSTPKFKNSWFCHDNIVTC-SRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP 538 (1757)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~LvSg-S~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 538 (1757)
..|+.. ..+|...||.+.... .+.....+..
T Consensus 293 ----------------------~~Laf~s~~~g~~~ly~~~~~~--------------------------~g~~~~~lt~ 324 (428)
T PRK01029 293 ----------------------TRLVFVSNKDGRPRIYIMQIDP--------------------------EGQSPRLLTK 324 (428)
T ss_pred ----------------------CEEEEEECCCCCceEEEEECcc--------------------------cccceEEecc
Confidence 445544 456766666443100 0111122333
Q ss_pred CCCCeeEEEEcCCCCEEEEEecC---CeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeC--CCcEEEEeCC
Q 000268 539 TPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGY--DGKTIVWDIW 613 (1757)
Q Consensus 539 h~~~VtsVafSPDG~~LaSGs~D---G~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~--DG~IrIWDl~ 613 (1757)
....+...+|||||++|+..+.+ ..|++||+.+++... +......+....|+|++..+++++.. ...|.+||+.
T Consensus 325 ~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 325 KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 33456788999999999876543 469999998887654 43334456789999955555555543 3568899998
Q ss_pred CCceEEEEeecCcceEEEEEcCCC
Q 000268 614 EGIPIRIYEISRFRLVDGKFSPDG 637 (1757)
Q Consensus 614 tg~~l~~l~~~~~~VtslafSPDG 637 (1757)
.++...... ..+.+...+|+|-.
T Consensus 404 ~g~~~~Lt~-~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 404 TKKTRKIVI-GSGEKRFPSWGAFP 426 (428)
T ss_pred CCCEEEeec-CCCcccCceecCCC
Confidence 777655543 55567778898854
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-06 Score=105.75 Aligned_cols=278 Identities=12% Similarity=0.005 Sum_probs=166.4
Q ss_pred ceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC----------CceEEEEECCCCCceEEecCC-------C
Q 000268 265 RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN----------DCIIRVWRLPDGLPISVLRGH-------T 327 (1757)
Q Consensus 265 GtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~----------DGtIrVWDl~tg~~l~~l~gH-------~ 327 (1757)
++|.|.|..+++.+.++..-..+- .+ ++|||+.|+++.. +..|.|||+.+++.+..+.-. .
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 899999999999999887433333 24 9999998877665 689999999999999887632 2
Q ss_pred CceEEEEecCCCCceEEEEEEe-C-CCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCC
Q 000268 328 AAVTAIAFSPRPGSVYQLLSSS-D-DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT 405 (1757)
Q Consensus 328 ~~VtsLafSPdg~~~~~LaSgs-~-DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~ 405 (1757)
.....++++||++ +|++.. . +..|.+.|+.+++.+..+..+.. ..-...+.++.
T Consensus 105 ~~~~~~~ls~dgk---~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~---------------------~~vy~t~e~~~ 160 (352)
T TIGR02658 105 TYPWMTSLTPDNK---TLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC---------------------YHIFPTANDTF 160 (352)
T ss_pred CccceEEECCCCC---EEEEecCCCCCEEEEEECCCCcEEEEEeCCCC---------------------cEEEEecCCcc
Confidence 2345789999998 566544 3 78999999999998887754221 11111221211
Q ss_pred EEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEE-EccCccccccccccCCCCCCCCccccc--cc-CC
Q 000268 406 VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQ-FSGCAVASRFSLADSSKEDSTPKFKNS--WF-CH 481 (1757)
Q Consensus 406 ~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLa-fSpdg~~s~~~~~~~~~~~~~~~~~~~--~~-~~ 481 (1757)
+ +.+.||......+... ++.. +.... |.++ ..+.+... +. .+
T Consensus 161 ~--~~~~Dg~~~~v~~d~~--------g~~~---------~~~~~vf~~~---------------~~~v~~rP~~~~~dg 206 (352)
T TIGR02658 161 F--MHCRDGSLAKVGYGTK--------GNPK---------IKPTEVFHPE---------------DEYLINHPAYSNKSG 206 (352)
T ss_pred E--EEeecCceEEEEecCC--------CceE---------EeeeeeecCC---------------ccccccCCceEcCCC
Confidence 1 1122333333222110 0000 00000 1000 00000000 11 12
Q ss_pred CcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEe--
Q 000268 482 DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI-- 559 (1757)
Q Consensus 482 ~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs-- 559 (1757)
..+.+.. .|+|.+.|+....... ...|... . . .. ..---....+.-++++++|+.++++.
T Consensus 207 ~~~~vs~-eG~V~~id~~~~~~~~-~~~~~~~-~--~-----------~~--~~~~wrP~g~q~ia~~~dg~~lyV~~~~ 268 (352)
T TIGR02658 207 RLVWPTY-TGKIFQIDLSSGDAKF-LPAIEAF-T--E-----------AE--KADGWRPGGWQQVAYHRARDRIYLLADQ 268 (352)
T ss_pred cEEEEec-CCeEEEEecCCCccee-cceeeec-c--c-----------cc--cccccCCCcceeEEEcCCCCEEEEEecC
Confidence 3333333 3999999976533111 0111100 0 0 00 00001233445599999999988843
Q ss_pred --------cCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCC-cEEEEEeCCCcEEEEeCCCCceEEEE
Q 000268 560 --------MDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNP-RIAMSAGYDGKTIVWDIWEGIPIRIY 621 (1757)
Q Consensus 560 --------~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~-~lLaSgs~DG~IrIWDl~tg~~l~~l 621 (1757)
..+.|.++|..+++.+..+.. ...+..|+++|++. .++++...++.|.|.|+.+++.++.+
T Consensus 269 ~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 269 RAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 224799999999999998874 34689999999655 44444447889999999999999998
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.9e-06 Score=116.79 Aligned_cols=357 Identities=14% Similarity=0.171 Sum_probs=210.3
Q ss_pred ceeEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEE------------------------EEEec-----
Q 000268 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCL------------------------ASCRG----- 283 (1757)
Q Consensus 233 ~k~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l------------------------~tL~g----- 283 (1757)
.+.+..+ ...|.|++||||+..||..+.+++|.+-+-. ...+ ..|+|
T Consensus 113 ~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~ 188 (928)
T PF04762_consen 113 IEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKA 188 (928)
T ss_pred eEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhh
Confidence 3444444 4789999999999999999988888876421 1111 11111
Q ss_pred -------------------CCCCeEEEEEcCCCCEEEEEeC---C---ceEEEEECCCCCceEEecCCCCceEEEEecCC
Q 000268 284 -------------------HEGDITDLAVSSNNALVASASN---D---CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPR 338 (1757)
Q Consensus 284 -------------------H~~~VtsLafSPDg~lLASgS~---D---GtIrVWDl~tg~~l~~l~gH~~~VtsLafSPd 338 (1757)
+...-..|+|-.||.++|+.+. . ..|+||+-+ |....+-..-.+--.+++|.|.
T Consensus 189 aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPs 267 (928)
T PF04762_consen 189 AARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPS 267 (928)
T ss_pred hhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCC
Confidence 2234567889999999998765 2 579999954 7655555444455568899999
Q ss_pred CCceEEEEEEeC---CCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCce
Q 000268 339 PGSVYQLLSSSD---DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTL 415 (1757)
Q Consensus 339 g~~~~~LaSgs~---DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~ 415 (1757)
|+ +|++... ...|.+|.-+ |-.-..+.++. ......|..+.|++|+..||+...|.
T Consensus 268 G~---lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~----------------~~~~~~v~~l~Wn~ds~iLAv~~~~~- 326 (928)
T PF04762_consen 268 GN---LIASSQRLPDRHDVVFFERN-GLRHGEFTLRF----------------DPEEEKVIELAWNSDSEILAVWLEDR- 326 (928)
T ss_pred CC---EEEEEEEcCCCcEEEEEecC-CcEeeeEecCC----------------CCCCceeeEEEECCCCCEEEEEecCC-
Confidence 97 6766654 3456666533 32222232211 23456689999999999999987655
Q ss_pred EEEecCCCCCCCCCCCCCcceeeecCC-CCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEE
Q 000268 416 ARVWNACKPNTDDSDQPNHEIDVLSGH-ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAI 494 (1757)
Q Consensus 416 IrVWDl~t~~~~~s~~~~~~i~~l~gH-~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~ 494 (1757)
|.+|...+.. +...+.+... ...+..+.|+|.. ...|...+.+|.+.
T Consensus 327 vqLWt~~NYH-------WYLKqei~~~~~~~~~~~~Wdpe~-------------------------p~~L~v~t~~g~~~ 374 (928)
T PF04762_consen 327 VQLWTRSNYH-------WYLKQEIRFSSSESVNFVKWDPEK-------------------------PLRLHVLTSNGQYE 374 (928)
T ss_pred ceEEEeeCCE-------EEEEEEEEccCCCCCCceEECCCC-------------------------CCEEEEEecCCcEE
Confidence 9999885432 2223333322 2334558888753 23455555545554
Q ss_pred EEeC----CCCCCCc-----ccc----c--ccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEe
Q 000268 495 IWIP----RSRRSHP-----KAA----R--WTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI 559 (1757)
Q Consensus 495 IWDl----~t~k~~~-----~~~----~--w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs 559 (1757)
++++ ..+.... ... . ....+....-|+||. .........|..++|++++..+++-.
T Consensus 375 ~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs---------~~~l~~~~~v~~vaf~~~~~~~avl~ 445 (928)
T PF04762_consen 375 IYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMS---------SYELELPSPVNDVAFSPSNSRFAVLT 445 (928)
T ss_pred EEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHh---------ceEEcCCCCcEEEEEeCCCCeEEEEE
Confidence 4322 2111000 000 0 000011111111111 12233457899999999999899999
Q ss_pred cCCeEEEEECCCCc--------eEEEEe----------CCCCCeEEEEEecCCCcEEEEEeCC---CcEEEEeCCCCc--
Q 000268 560 MDCRICVWNAADGS--------LVHSLT----------GHTESTYVLDVHPFNPRIAMSAGYD---GKTIVWDIWEGI-- 616 (1757)
Q Consensus 560 ~DG~I~IWDl~tgk--------ll~~L~----------gH~~~VtsLafSPdd~~lLaSgs~D---G~IrIWDl~tg~-- 616 (1757)
.||.|.+|...... ....+. .....+..++|.. ...+++....+ ..+.++++....
T Consensus 446 ~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 524 (928)
T PF04762_consen 446 SDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLN-DDTLLVLSDSDSNQSKIVLVDIDDSENS 524 (928)
T ss_pred CCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeC-CCEEEEEEecCcccceEEEEEeccCCCc
Confidence 99999999854321 111111 1234567888877 44544444443 678888885432
Q ss_pred -eEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 000268 617 -PIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 657 (1757)
Q Consensus 617 -~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~tG 657 (1757)
.+.........+..+...++...++.-..+|.|+..+....
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~ 566 (928)
T PF04762_consen 525 ASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGE 566 (928)
T ss_pred eeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCC
Confidence 33333334455666666666666777788999997776543
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.1e-08 Score=112.61 Aligned_cols=273 Identities=19% Similarity=0.252 Sum_probs=168.1
Q ss_pred CCCEEEEEECCCCCEEEEEcCCceEEEEecCCCe-----EEEEEecCC------------CCeEEEEEcCCCC--EEEEE
Q 000268 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY-----CLASCRGHE------------GDITDLAVSSNNA--LVASA 303 (1757)
Q Consensus 243 ~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~-----~l~tL~gH~------------~~VtsLafSPDg~--lLASg 303 (1757)
..-|.||.|..+|.+||||..+|.|.++.-.... ....++.|. ..|..+.|.+++. .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 3568999999999999999999999999643221 333444454 4678889998765 55666
Q ss_pred eCCceEEEEECCCCC-----------------------------------ceEEe-cCCCCceEEEEecCCCCceEEEEE
Q 000268 304 SNDCIIRVWRLPDGL-----------------------------------PISVL-RGHTAAVTAIAFSPRPGSVYQLLS 347 (1757)
Q Consensus 304 S~DGtIrVWDl~tg~-----------------------------------~l~~l-~gH~~~VtsLafSPdg~~~~~LaS 347 (1757)
+.|.+|++|.+.... +.+.+ .+|+.-|.+|.+..|.. .+++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E---t~lS 181 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE---TFLS 181 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc---eEee
Confidence 789999999874210 01111 25778899999999986 5555
Q ss_pred EeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCC-CCEEEEeeCCceEEEecCCCCCC
Q 000268 348 SSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNACKPNT 426 (1757)
Q Consensus 348 gs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpd-G~~LasGs~DG~IrVWDl~t~~~ 426 (1757)
+ .|=.|-+|++.-......+.--.|.. ...-..-|++..|+|. -++|+-.+..|+|++.|++....
T Consensus 182 A-DdLRINLWnlei~d~sFnIVDIKP~n------------mEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aL 248 (433)
T KOG1354|consen 182 A-DDLRINLWNLEIIDQSFNIVDIKPAN------------MEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSAL 248 (433)
T ss_pred c-cceeeeeccccccCCceeEEEccccC------------HHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhh
Confidence 5 46779999987554444332211111 0112234778889995 46778888899999999984321
Q ss_pred CC-------CCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCC
Q 000268 427 DD-------SDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPR 499 (1757)
Q Consensus 427 ~~-------s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~ 499 (1757)
-. .........-+..--..|..+.|+++| .++++ -.--+|++||+.
T Consensus 249 Cd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG--------------------------ryils-RDyltvk~wD~n 301 (433)
T KOG1354|consen 249 CDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG--------------------------RYILS-RDYLTVKLWDLN 301 (433)
T ss_pred hcchhhhhccccCCcchhhHHHHhhhhhceEEccCC--------------------------cEEEE-eccceeEEEecc
Confidence 11 011111122233445678888999876 34443 333689999986
Q ss_pred CCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCC--CCeeEEEEcCCCCEEEEEecCCeEEEEECCCCc
Q 000268 500 SRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP--RGVNMIVWSLDNRFVLAAIMDCRICVWNAADGS 573 (1757)
Q Consensus 500 t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~--~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgk 573 (1757)
-..... .+.+..... ...+..+.... -.-..++|+-++.+++||+....+++|++..|.
T Consensus 302 me~~pv---~t~~vh~~l------------r~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 302 MEAKPV---ETYPVHEYL------------RSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred ccCCcc---eEEeehHhH------------HHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 321100 000000000 00000000000 113467899999999999999999999976653
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.2e-08 Score=121.17 Aligned_cols=234 Identities=15% Similarity=0.044 Sum_probs=142.9
Q ss_pred eEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeC-CC--cEEEEecCCCCccceeecCCCCccccCCCCCC
Q 000268 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD-DG--TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 384 (1757)
Q Consensus 308 tIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~-DG--tIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~ 384 (1757)
.|.++|..... .+.+..+...+.+..|+||++ .|+..+. ++ .|.+||+.+++......
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~---~La~~s~~~g~~~L~~~dl~tg~~~~lt~--------------- 259 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGR---KLAYVSFENRKAEIFVQDIYTQVREKVTS--------------- 259 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCC---EEEEEEecCCCcEEEEEECCCCCeEEecC---------------
Confidence 67777865443 345556777899999999997 5554433 33 58888988765321110
Q ss_pred CCCCCCCCcceEEEEECCCCCEEEE-eeCCce--EEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccc
Q 000268 385 SSSAGPQSHQIFCCAFNANGTVFVT-GSSDTL--ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFS 461 (1757)
Q Consensus 385 ~~~~~~~~~~V~slafSpdG~~Las-Gs~DG~--IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~ 461 (1757)
........+|+|||+.|+. ...+|. |.+||+.++ ....+..+...+...+|+|++
T Consensus 260 ------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg----------~~~~lt~~~~~~~~p~wSpDG------ 317 (448)
T PRK04792 260 ------FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATK----------ALTRITRHRAIDTEPSWHPDG------ 317 (448)
T ss_pred ------CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCC----------CeEECccCCCCccceEECCCC------
Confidence 0112235789999998775 455564 777777543 233444455566778899987
Q ss_pred cccCCCCCCCCcccccccCCCcEE-EEcCCCe--EEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecC
Q 000268 462 LADSSKEDSTPKFKNSWFCHDNIV-TCSRDGS--AIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP 538 (1757)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~Lv-SgS~DGt--I~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 538 (1757)
..|+ +...+|. |.++|+.+++ ..++..
T Consensus 318 --------------------~~I~f~s~~~g~~~Iy~~dl~~g~------------------------------~~~Lt~ 347 (448)
T PRK04792 318 --------------------KSLIFTSERGGKPQIYRVNLASGK------------------------------VSRLTF 347 (448)
T ss_pred --------------------CEEEEEECCCCCceEEEEECCCCC------------------------------EEEEec
Confidence 3444 4444454 4445554322 111111
Q ss_pred CCCCeeEEEEcCCCCEEEEEecC-C--eEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCc--EEEEeCC
Q 000268 539 TPRGVNMIVWSLDNRFVLAAIMD-C--RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGK--TIVWDIW 613 (1757)
Q Consensus 539 h~~~VtsVafSPDG~~LaSGs~D-G--~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~--IrIWDl~ 613 (1757)
........+|+|||++|+..+.+ + .|.++|+.+++.. .+.... ......|+|++..++++...+|. |.++++
T Consensus 348 ~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~- 424 (448)
T PRK04792 348 EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI- 424 (448)
T ss_pred CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEEC-
Confidence 11223346899999999886653 3 5677888887653 333221 22345899966666666655554 677787
Q ss_pred CCceEEEEeecCcceEEEEEcC
Q 000268 614 EGIPIRIYEISRFRLVDGKFSP 635 (1757)
Q Consensus 614 tg~~l~~l~~~~~~VtslafSP 635 (1757)
+|.....+..+.+.+...+|||
T Consensus 425 ~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 425 DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCCceEECcCCCCCcCCCccCC
Confidence 6777777765566677788887
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-07 Score=118.80 Aligned_cols=181 Identities=17% Similarity=0.142 Sum_probs=109.0
Q ss_pred CCCeeEEEEcCCCCEEEEEec-----CCeEEEEECCCC---ceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000268 540 PRGVNMIVWSLDNRFVLAAIM-----DCRICVWNAADG---SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1757)
Q Consensus 540 ~~~VtsVafSPDG~~LaSGs~-----DG~I~IWDl~tg---kll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWD 611 (1757)
.......+|||||+.|+..+. +..+.+|++..+ +......++.+.....+|+|++..++++...+|...||.
T Consensus 230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~ 309 (428)
T PRK01029 230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYI 309 (428)
T ss_pred CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEE
Confidence 334456799999999887653 223455777653 333333333344567899996555666655677655554
Q ss_pred --CCC-CceEEEEeecCcceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCccccccccceeecCCCccEEEccCCcee
Q 000268 612 --IWE-GIPIRIYEISRFRLVDGKFSPDGASIILSDDV---GQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVL 685 (1757)
Q Consensus 612 --l~t-g~~l~~l~~~~~~VtslafSPDGk~LAsgs~D---G~I~IWdl~tGe~~~~~~~~~~fs~D~r~Li~d~~g~vl 685 (1757)
+.. +.....+..+...+....|||||++|+....+ ..|++|++.+|+... |
T Consensus 310 ~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~--------------L--------- 366 (428)
T PRK01029 310 MQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ--------------L--------- 366 (428)
T ss_pred EECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE--------------c---------
Confidence 432 33344444444567788999999999976443 478889887764321 0
Q ss_pred ecccccccCcCCCCCcccCCCCCCCCCcchhhhhcccccccceEECCCCCeEEEeeCCCCCCceEeeccCCcccc-cCCC
Q 000268 686 DQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVM-IDPL 764 (1757)
Q Consensus 686 D~~tql~phl~~l~~~L~D~~~~p~p~~~Q~l~~~r~~~v~~lAfSPDG~~LAvg~d~s~~~~v~l~~l~~~~~l-~~pl 764 (1757)
+. . . ......+|+|||++|+..........+.++++.+.... +...
T Consensus 367 ---t~---~--~-------------------------~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~ 413 (428)
T PRK01029 367 ---TT---S--P-------------------------ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIG 413 (428)
T ss_pred ---cC---C--C-------------------------CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC
Confidence 00 0 0 01124679999999997754444566778887655422 1122
Q ss_pred ccccceeeeCCC
Q 000268 765 PEFIDVMDWEPE 776 (1757)
Q Consensus 765 p~~i~~~~~sPD 776 (1757)
.+.+...+|+|-
T Consensus 414 ~g~~~~p~Ws~~ 425 (428)
T PRK01029 414 SGEKRFPSWGAF 425 (428)
T ss_pred CCcccCceecCC
Confidence 333556788874
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.5e-07 Score=110.41 Aligned_cols=272 Identities=15% Similarity=0.127 Sum_probs=167.0
Q ss_pred CCEEEEEECCCCCEEEEEcC----CceEEEEecCC--CeE--EEEEecCCCCeEEEEEcCCCCEEEEEeC-CceEEEEEC
Q 000268 244 NAVYCAIFDRSGRYVITGSD----DRLVKIWSMET--AYC--LASCRGHEGDITDLAVSSNNALVASASN-DCIIRVWRL 314 (1757)
Q Consensus 244 ~~V~~VaFSPDG~~LATGS~----DGtIkIWDl~t--g~~--l~tL~gH~~~VtsLafSPDg~lLASgS~-DGtIrVWDl 314 (1757)
..-..++++|++++|.++.. +|.|..|.+.. |.+ +.+..........++++|++++|+++.. +|.|.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 44566889999999988865 57999998875 333 3334434566788999999999998875 899999999
Q ss_pred CC-CCceEE---ec----------CCCCceEEEEecCCCCceEEEEEE-eCCCcEEEEecCCCC--ccceeecCCCCccc
Q 000268 315 PD-GLPISV---LR----------GHTAAVTAIAFSPRPGSVYQLLSS-SDDGTCRIWDARYSQ--FSPRIYIPRPSDAV 377 (1757)
Q Consensus 315 ~t-g~~l~~---l~----------gH~~~VtsLafSPdg~~~~~LaSg-s~DGtIrIWDl~tg~--~~~~i~l~~~~~~~ 377 (1757)
.. |..... +. .......++.|+|+++ +|++. -....|.+|++.... +.....+
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~---~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~------- 186 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR---FVYVPDLGADRVYVYDIDDDTGKLTPVDSI------- 186 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS---EEEEEETTTTEEEEEEE-TTS-TEEEEEEE-------
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCC---EEEEEecCCCEEEEEEEeCCCceEEEeecc-------
Confidence 76 433222 21 1234578999999987 45444 344579999987665 2221111
Q ss_pred cCCCCCCCCCCCCCCcceEEEEECCCCCEEEEee-CCceEEEecCCCCCCCCCCCCCcceeeecC----C--CCCceEEE
Q 000268 378 AGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS-SDTLARVWNACKPNTDDSDQPNHEIDVLSG----H--ENDVNYVQ 450 (1757)
Q Consensus 378 ~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs-~DG~IrVWDl~t~~~~~s~~~~~~i~~l~g----H--~~~V~sLa 450 (1757)
..+.......++|+|+|+++++.. .++.|.+|++..... ....+..+.. . ......|+
T Consensus 187 ----------~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~i~ 251 (345)
T PF10282_consen 187 ----------KVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDG-----SLTEIQTISTLPEGFTGENAPAEIA 251 (345)
T ss_dssp ----------ECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT-----EEEEEEEEESCETTSCSSSSEEEEE
T ss_pred ----------ccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCC-----ceeEEEEeeeccccccccCCceeEE
Confidence 012345588999999998876654 578899998862110 0111111111 1 12567788
Q ss_pred EccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCC
Q 000268 451 FSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRG 530 (1757)
Q Consensus 451 fSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~ 530 (1757)
++|++ .-++++....++|.+|++.......
T Consensus 252 ispdg-------------------------~~lyvsnr~~~sI~vf~~d~~~g~l------------------------- 281 (345)
T PF10282_consen 252 ISPDG-------------------------RFLYVSNRGSNSISVFDLDPATGTL------------------------- 281 (345)
T ss_dssp E-TTS-------------------------SEEEEEECTTTEEEEEEECTTTTTE-------------------------
T ss_pred EecCC-------------------------CEEEEEeccCCEEEEEEEecCCCce-------------------------
Confidence 88887 1245556668899999985311000
Q ss_pred CCceeecCCCCCeeEEEEcCCCCEEEEEe-cCCeEEEEEC--CCCceEEEEe-CCCCCeEEEEE
Q 000268 531 GPRQRILPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNA--ADGSLVHSLT-GHTESTYVLDV 590 (1757)
Q Consensus 531 ~~~~~l~~h~~~VtsVafSPDG~~LaSGs-~DG~I~IWDl--~tgkll~~L~-gH~~~VtsLaf 590 (1757)
..+..+.......+.++++|+|++|+++. .++.|.+|++ .+|.+...-. ..-....||.|
T Consensus 282 ~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 282 TLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 01111222233478899999999999877 5668999866 5676654432 22334566655
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=6e-06 Score=98.17 Aligned_cols=142 Identities=16% Similarity=0.121 Sum_probs=114.3
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEecCC-eEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 000268 537 LPTPRGVNMIVWSLDNRFVLAAIMDC-RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG 615 (1757)
Q Consensus 537 ~~h~~~VtsVafSPDG~~LaSGs~DG-~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg 615 (1757)
.++...|.-..+.-++.-++.|..|| .|-|+|..+++ +..+...-+.|.++..+| ++++++.+.....|.+.|+.+|
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vididng 433 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNG 433 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCC
Confidence 45667788888888999999999999 89999987665 455666778899999999 7788888888888999999999
Q ss_pred ceEEEEeecCcceEEEEEcCCCCEEEEEeCCC----eEEEEECCCCccccc-----cccceeecCCCccEEEcc
Q 000268 616 IPIRIYEISRFRLVDGKFSPDGASIILSDDVG----QLYILNTGQGESQKD-----AKYDQFFLGDYRPLVQDT 680 (1757)
Q Consensus 616 ~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG----~I~IWdl~tGe~~~~-----~~~~~~fs~D~r~Li~d~ 680 (1757)
.....-....+-|+..+|+|++++||.+--+| .|+++|+..++.... ..+..+|-+|++.|..-+
T Consensus 434 nv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 434 NVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 87665555566799999999999999886555 799999998876542 224558999999987544
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.6e-09 Score=124.53 Aligned_cols=201 Identities=17% Similarity=0.247 Sum_probs=145.5
Q ss_pred cccCCcchhhhccccccCccccccce----eEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecC-------CCeE
Q 000268 209 RHHRAPSIRAACYAIAKPSTMVQKMQ----NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSME-------TAYC 277 (1757)
Q Consensus 209 ~~~~~~~l~s~~~~~a~~~~~~~~~k----~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~-------tg~~ 277 (1757)
.|..+..++..|.........++++. .+..+.||+..|.+++--.+.+-+++++.|.+|++|.+. |..+
T Consensus 697 ~hlkGn~lA~W~~ets~~e~dt~~ln~~~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaC 776 (1034)
T KOG4190|consen 697 DHLKGNLLAVWCAETSAAECDTDNLNFDHIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSAC 776 (1034)
T ss_pred cccccchHHHHHhhhhHhhcCCcccccceeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcccccee
Confidence 33344444455543333333333322 345688999999999888888889999999999999985 3347
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEec--CCCCceEEEEecCCCCceEEEEEEeCCCcEE
Q 000268 278 LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR--GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355 (1757)
Q Consensus 278 l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~--gH~~~VtsLafSPdg~~~~~LaSgs~DGtIr 355 (1757)
..++..|..+|.++.|-.+.++++++ ||.|.+||.--|+++..+. ...+.+..+...++-.....++-++...+|+
T Consensus 777 QfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVK 854 (1034)
T KOG4190|consen 777 QFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVK 854 (1034)
T ss_pred eeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhhe
Confidence 77888999999999999998888775 8889999998887776432 1234444555555422222334447889999
Q ss_pred EEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCC
Q 000268 356 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNT 426 (1757)
Q Consensus 356 IWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~ 426 (1757)
++|.+.+.....+.+.. ..+....+.++++.+.|++++++-.+|.|.+.|.+++..
T Consensus 855 l~DaRsce~~~E~kVcn---------------a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~v 910 (1034)
T KOG4190|consen 855 LFDARSCEWTCELKVCN---------------APGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKV 910 (1034)
T ss_pred eeecccccceeeEEecc---------------CCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCce
Confidence 99999988777665421 123446688999999999999999999999999988654
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.3e-07 Score=117.01 Aligned_cols=235 Identities=12% Similarity=0.043 Sum_probs=142.1
Q ss_pred eEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCC---CcEEEEecCCCCccceeecCCCCccccCCCCCC
Q 000268 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD---GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 384 (1757)
Q Consensus 308 tIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~D---GtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~ 384 (1757)
.|.++|...+. ...+..+...+...+|+|+++ .|+..+.+ ..|.+|++.++......
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~---~la~~s~~~~~~~l~~~~l~~g~~~~l~---------------- 239 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGK---RIAYVSFEQKRPRIFVQNLDTGRREQIT---------------- 239 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCC---EEEEEEcCCCCCEEEEEECCCCCEEEcc----------------
Confidence 47788876544 455556778899999999997 66555433 36888999877532211
Q ss_pred CCCCCCCCcceEEEEECCCCCEEEEe-eCCc--eEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccc
Q 000268 385 SSSAGPQSHQIFCCAFNANGTVFVTG-SSDT--LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFS 461 (1757)
Q Consensus 385 ~~~~~~~~~~V~slafSpdG~~LasG-s~DG--~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~ 461 (1757)
...+.+...+|+|||+.|+.. ..+| .|.+||+.++. ...+..+........|+|++
T Consensus 240 -----~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~----------~~~lt~~~~~~~~~~~spDg------ 298 (430)
T PRK00178 240 -----NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ----------LSRVTNHPAIDTEPFWGKDG------ 298 (430)
T ss_pred -----CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC----------eEEcccCCCCcCCeEECCCC------
Confidence 011223468899999988743 3444 68888886532 23344455556678899886
Q ss_pred cccCCCCCCCCcccccccCCCcEE-EEcCCC--eEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecC
Q 000268 462 LADSSKEDSTPKFKNSWFCHDNIV-TCSRDG--SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP 538 (1757)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~Lv-SgS~DG--tI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 538 (1757)
..|+ +...+| .|.++++.++.. .++..
T Consensus 299 --------------------~~i~f~s~~~g~~~iy~~d~~~g~~------------------------------~~lt~ 328 (430)
T PRK00178 299 --------------------RTLYFTSDRGGKPQIYKVNVNGGRA------------------------------ERVTF 328 (430)
T ss_pred --------------------CEEEEEECCCCCceEEEEECCCCCE------------------------------EEeec
Confidence 3444 443444 455566654221 01111
Q ss_pred CCCCeeEEEEcCCCCEEEEEecC-C--eEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEeCC
Q 000268 539 TPRGVNMIVWSLDNRFVLAAIMD-C--RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDG--KTIVWDIW 613 (1757)
Q Consensus 539 h~~~VtsVafSPDG~~LaSGs~D-G--~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG--~IrIWDl~ 613 (1757)
........+|+|||++|+..+.+ + .|.+||+.+++... +.. ........|+|++..++++...+| .|.++++
T Consensus 329 ~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~- 405 (430)
T PRK00178 329 VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSI- 405 (430)
T ss_pred CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEEC-
Confidence 11122346899999999887643 2 58899998886533 332 222335689996555555554444 4667777
Q ss_pred CCceEEEEeecCcceEEEEEcCC
Q 000268 614 EGIPIRIYEISRFRLVDGKFSPD 636 (1757)
Q Consensus 614 tg~~l~~l~~~~~~VtslafSPD 636 (1757)
.|.....+..+.+.+...+|||-
T Consensus 406 ~g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 406 NGRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CCCceEECcCCCCCcCCCccCCC
Confidence 45545555545556677778763
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.1e-07 Score=115.03 Aligned_cols=308 Identities=12% Similarity=0.115 Sum_probs=192.2
Q ss_pred CCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCC
Q 000268 325 GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG 404 (1757)
Q Consensus 325 gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG 404 (1757)
.+....+.|..+|||. +.+++|..--.|++||+....+.....+ ....|.-.-++.|-
T Consensus 49 e~p~ast~ik~s~DGq--Y~lAtG~YKP~ikvydlanLSLKFERhl--------------------Dae~V~feiLsDD~ 106 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQ--YLLATGTYKPQIKVYDLANLSLKFERHL--------------------DAEVVDFEILSDDY 106 (703)
T ss_pred CCccccceeEecCCCc--EEEEecccCCceEEEEcccceeeeeecc--------------------cccceeEEEeccch
Confidence 4677889999999998 5788888999999999986543322211 11223333444444
Q ss_pred CEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcE
Q 000268 405 TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI 484 (1757)
Q Consensus 405 ~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~L 484 (1757)
.-++.-..|.+|-+..... .- ..+. -...-..++++. +..+ |
T Consensus 107 SK~v~L~~DR~IefHak~G----------~h-y~~R-IP~~GRDm~y~~-------------------------~scD-l 148 (703)
T KOG2321|consen 107 SKSVFLQNDRTIEFHAKYG----------RH-YRTR-IPKFGRDMKYHK-------------------------PSCD-L 148 (703)
T ss_pred hhheEeecCceeeehhhcC----------ee-eeee-cCcCCccccccC-------------------------CCcc-E
Confidence 4455555566665443210 00 0000 000111222221 1113 3
Q ss_pred EEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeE
Q 000268 485 VTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRI 564 (1757)
Q Consensus 485 vSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I 564 (1757)
++++....|.-+++..++ |.. .+......+++|..++...+|++|+.+|.|
T Consensus 149 y~~gsg~evYRlNLEqGr-------fL~----------------------P~~~~~~~lN~v~in~~hgLla~Gt~~g~V 199 (703)
T KOG2321|consen 149 YLVGSGSEVYRLNLEQGR-------FLN----------------------PFETDSGELNVVSINEEHGLLACGTEDGVV 199 (703)
T ss_pred EEeecCcceEEEEccccc-------ccc----------------------ccccccccceeeeecCccceEEecccCceE
Confidence 444444567777777543 221 122334679999999999999999999999
Q ss_pred EEEECCCCceEEEEe------CCCC-----CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-ecCcceEEEE
Q 000268 565 CVWNAADGSLVHSLT------GHTE-----STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE-ISRFRLVDGK 632 (1757)
Q Consensus 565 ~IWDl~tgkll~~L~------gH~~-----~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~-~~~~~Vtsla 632 (1757)
.+||.++...+.++. .|.+ .|+++.|+- ++..+++|..+|.|.|||+.+.+++..-. ....+|..+.
T Consensus 200 EfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~ 278 (703)
T KOG2321|consen 200 EFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLD 278 (703)
T ss_pred EEecchhhhhheeeecccccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeecccCCccceeeec
Confidence 999998877666554 2333 399999987 68889999999999999999999887654 2345888999
Q ss_pred EcCC--CCEEEEEeCCCeEEEEECCCCccccccccceeecCCCccEEEccCCceeecccccccCcCCCCCcccCCCCCCC
Q 000268 633 FSPD--GASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPY 710 (1757)
Q Consensus 633 fSPD--Gk~LAsgs~DG~I~IWdl~tGe~~~~~~~~~~fs~D~r~Li~d~~g~vlD~~tql~phl~~l~~~L~D~~~~p~ 710 (1757)
|-+. +..|++. +...++||+-.+|+....+-+ .+
T Consensus 279 ~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp------------------------------------t~------- 314 (703)
T KOG2321|consen 279 WQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP------------------------------------TS------- 314 (703)
T ss_pred ccccCCCceEEec-chHHhhhcccccCCceeeccc------------------------------------cC-------
Confidence 9775 3444444 447899999888765432110 00
Q ss_pred CCcchhhhhcccccccceEECCCCCeEEEeeCCCCCCceEeeccCCcccccCCCccccceeeeCCCCCc
Q 000268 711 PEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEPENEV 779 (1757)
Q Consensus 711 p~~~Q~l~~~r~~~v~~lAfSPDG~~LAvg~d~s~~~~v~l~~l~~~~~l~~plp~~i~~~~~sPDg~~ 779 (1757)
.+..+++=|++.++.++.+.+.-..+-++.|+-..+....|..+...|.-.|..++
T Consensus 315 -------------~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGPaPrWCSfLdnlTEElEE~~~~TV 370 (703)
T KOG2321|consen 315 -------------DLNDFCFVPGSGMFFTANESSKMHTYYIPSLGPAPRWCSFLDNLTEELEENPETTV 370 (703)
T ss_pred -------------CcCceeeecCCceEEEecCCCcceeEEccccCCCchhhhHHHhHHHHHhcCCcccc
Confidence 12235566777777777555555666777775444444555555555555555444
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1e-08 Score=125.84 Aligned_cols=288 Identities=19% Similarity=0.206 Sum_probs=187.7
Q ss_pred CCCEEEEEECCCCCEEEEEcCCceEEEEecCC-CeEEEEEe-cCCCCeEEEEEcCCCC---EEEEEeCCceEEEEECCCC
Q 000268 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMET-AYCLASCR-GHEGDITDLAVSSNNA---LVASASNDCIIRVWRLPDG 317 (1757)
Q Consensus 243 ~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~t-g~~l~tL~-gH~~~VtsLafSPDg~---lLASgS~DGtIrVWDl~tg 317 (1757)
.+++.++.++|.|+-+|.++.-|. .|-|+.. +..-+-+. ...-.|-.+.|+|... .+++.+ ...-.||++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecC-cchhhhhhhhcC
Confidence 356889999999999999998774 4555543 33333332 1123466777887533 444444 445678988533
Q ss_pred ---CceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcc
Q 000268 318 ---LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1757)
Q Consensus 318 ---~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~ 394 (1757)
..-..+.+|+..|+.+.|.|... ..|++++.|-.|..||++........ ...-...
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~p--dVlatcsvdt~vh~wd~rSp~~p~ys-------------------~~~w~s~ 160 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHP--DVLATCSVDTYVHAWDMRSPHRPFYS-------------------TSSWRSA 160 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCC--cceeeccccccceeeeccCCCcceee-------------------eeccccc
Confidence 34456789999999999999865 48999999999999999875432211 1112233
Q ss_pred eEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcc
Q 000268 395 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 474 (1757)
Q Consensus 395 V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~ 474 (1757)
...++|+-....+.+.+....|++||.+.+ ..++..+.+|...|+.+.|..--
T Consensus 161 asqVkwnyk~p~vlasshg~~i~vwd~r~g--------s~pl~s~K~~vs~vn~~~fnr~~------------------- 213 (1081)
T KOG0309|consen 161 ASQVKWNYKDPNVLASSHGNDIFVWDLRKG--------STPLCSLKGHVSSVNSIDFNRFK------------------- 213 (1081)
T ss_pred CceeeecccCcchhhhccCCceEEEeccCC--------CcceEEecccceeeehHHHhhhh-------------------
Confidence 456788874444555566778999999875 34677888899999998887432
Q ss_pred cccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCE
Q 000268 475 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRF 554 (1757)
Q Consensus 475 ~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~ 554 (1757)
...+.+++.||+|+.||....... | .+......+|..-.+-|-|.-
T Consensus 214 ------~s~~~s~~~d~tvkfw~y~kSt~e-----~-----------------------~~~vtt~~piw~~r~~Pfg~g 259 (1081)
T KOG0309|consen 214 ------YSEIMSSSNDGTVKFWDYSKSTTE-----S-----------------------KRTVTTNFPIWRGRYLPFGEG 259 (1081)
T ss_pred ------hhhhcccCCCCceeeecccccccc-----c-----------------------ceeccccCcceeccccccCce
Confidence 357899999999999998752211 1 111222233333334443322
Q ss_pred EEE-----------EecCCeEEEEECCC-CceEEEEeCCCCCeEEEEEecC---------CCcEEEEEeCCCcEEEEeCC
Q 000268 555 VLA-----------AIMDCRICVWNAAD-GSLVHSLTGHTESTYVLDVHPF---------NPRIAMSAGYDGKTIVWDIW 613 (1757)
Q Consensus 555 LaS-----------Gs~DG~I~IWDl~t-gkll~~L~gH~~~VtsLafSPd---------d~~lLaSgs~DG~IrIWDl~ 613 (1757)
..+ ---+.....|+..+ .+++++|.||.+.|....|-.. ....|+|-+.|..+++|-+.
T Consensus 260 ~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 260 YCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred eEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 111 11122233455444 4689999999998877666321 12478899999999999885
Q ss_pred C
Q 000268 614 E 614 (1757)
Q Consensus 614 t 614 (1757)
+
T Consensus 340 ~ 340 (1081)
T KOG0309|consen 340 S 340 (1081)
T ss_pred H
Confidence 4
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.1e-07 Score=116.49 Aligned_cols=229 Identities=15% Similarity=0.149 Sum_probs=157.2
Q ss_pred EEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEE--------------------CCC
Q 000268 344 QLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF--------------------NAN 403 (1757)
Q Consensus 344 ~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slaf--------------------Spd 403 (1757)
++|....||.+++|+...+++...+.- . .. ..+..++..| +-+
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p-~--~~--------------~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~ 69 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFAP-I--AS--------------LSGTCTYTKWGLSADYSPMKWLSLEKAKKASLD 69 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeecc-c--hh--------------ccCcceeEEEEEEeccchHHHHhHHHHhhccCC
Confidence 899999999999999998886655421 0 00 1111122222 124
Q ss_pred CCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCc
Q 000268 404 GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDN 483 (1757)
Q Consensus 404 G~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (1757)
...+|-|...|.|.+|++..+.. .-...-..|.+.|.++.++.+. ..
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~i-------t~~~st~~h~~~v~~~~~~~~~--------------------------~c 116 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEI-------TAKLSTDKHYGNVNEILDAQRL--------------------------GC 116 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeE-------EEEEecCCCCCcceeeeccccc--------------------------Cc
Confidence 45788888999999999965421 1112235789999999887654 58
Q ss_pred EEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCe
Q 000268 484 IVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCR 563 (1757)
Q Consensus 484 LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~ 563 (1757)
|.+++.|+.+..|+..... ...........+.+++++|||+.+++|+ +.
T Consensus 117 iyS~~ad~~v~~~~~~~~~-----------------------------~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ 165 (541)
T KOG4547|consen 117 IYSVGADLKVVYILEKEKV-----------------------------IIRIWKEQKPLVSSLCISPDGKILLTAS--RQ 165 (541)
T ss_pred eEecCCceeEEEEecccce-----------------------------eeeeeccCCCccceEEEcCCCCEEEecc--ce
Confidence 9999999999999988633 1222333445688999999999999987 68
Q ss_pred EEEEECCCCceEEEEeCCCCCeEEEEEecC-----CCcEEEEEeCCCcEEEEeCCC----CceEEEEeecCcceEEE-EE
Q 000268 564 ICVWNAADGSLVHSLTGHTESTYVLDVHPF-----NPRIAMSAGYDGKTIVWDIWE----GIPIRIYEISRFRLVDG-KF 633 (1757)
Q Consensus 564 I~IWDl~tgkll~~L~gH~~~VtsLafSPd-----d~~lLaSgs~DG~IrIWDl~t----g~~l~~l~~~~~~Vtsl-af 633 (1757)
|++||+.+++.+..|.||.+.|.++.|--. +.++|.++..+..|.+|-+.. +.....+...+.+++.= -.
T Consensus 166 ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl~~~dipv~~ds~~ 245 (541)
T KOG4547|consen 166 IKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSLTVPDIPVTSDSGL 245 (541)
T ss_pred EEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccchhheeeccCCCCeEecccc
Confidence 999999999999999999999999999774 346666677777888997654 23344454444454432 23
Q ss_pred cCCCC--E-EEEEeCCCeEEEEE
Q 000268 634 SPDGA--S-IILSDDVGQLYILN 653 (1757)
Q Consensus 634 SPDGk--~-LAsgs~DG~I~IWd 653 (1757)
..|+. + ||+....|.+..+.
T Consensus 246 ~ed~~~~l~lAst~~~g~v~~~~ 268 (541)
T KOG4547|consen 246 LEDGTIPLVLASTLIPGIVHLKL 268 (541)
T ss_pred ccccccceEEeeeccCceeeecc
Confidence 34444 3 33445555555544
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.6e-06 Score=115.57 Aligned_cols=344 Identities=14% Similarity=0.197 Sum_probs=203.5
Q ss_pred CEEEEEECCCCCEE--EEEcCCc--eEEEEecCCCe---EEEEEe-----cCCCCeEEEEEcCCCCEEEEEeCCceEEEE
Q 000268 245 AVYCAIFDRSGRYV--ITGSDDR--LVKIWSMETAY---CLASCR-----GHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1757)
Q Consensus 245 ~V~~VaFSPDG~~L--ATGS~DG--tIkIWDl~tg~---~l~tL~-----gH~~~VtsLafSPDg~lLASgS~DGtIrVW 312 (1757)
.+...+|++....+ +++.... .|.+....... .+..+. ...+.|.++.+-++...|+.+..+|.|.+.
T Consensus 23 ~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~ 102 (928)
T PF04762_consen 23 PITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILV 102 (928)
T ss_pred ccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEE
Confidence 46666676655443 3333222 34444433222 333333 245789999999999999999999999999
Q ss_pred ----ECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCC--------------
Q 000268 313 ----RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPS-------------- 374 (1757)
Q Consensus 313 ----Dl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~-------------- 374 (1757)
+..+.. +.....-...|.+++||||.. .|+.++.+|+|.+..- +...+....+....
T Consensus 103 ~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~E---lla~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkK 177 (928)
T PF04762_consen 103 REDPDPDEDE-IEIVGSVDSGILAASWSPDEE---LLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKK 177 (928)
T ss_pred EccCCCCCce-eEEEEEEcCcEEEEEECCCcC---EEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcc
Confidence 544332 222233457899999999997 8888888888887642 12111111111000
Q ss_pred ----ccccCCCC-----CCC------CCCCCCCcceEEEEECCCCCEEEEeeC---C---ceEEEecCCCCCCCCCCCCC
Q 000268 375 ----DAVAGRNM-----APS------SSAGPQSHQIFCCAFNANGTVFVTGSS---D---TLARVWNACKPNTDDSDQPN 433 (1757)
Q Consensus 375 ----~~~~g~~~-----~~~------~~~~~~~~~V~slafSpdG~~LasGs~---D---G~IrVWDl~t~~~~~s~~~~ 433 (1757)
....|+.. .+. .... ....-..|+|-.||.+||+.+- . ..|+||+-. |
T Consensus 178 eTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G--------- 246 (928)
T PF04762_consen 178 ETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-G--------- 246 (928)
T ss_pred cCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-c---------
Confidence 00001110 000 0111 3345678999999999998875 2 579999874 1
Q ss_pred cceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcC---CCeEEEEeCCCCCCCcccccc
Q 000268 434 HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR---DGSAIIWIPRSRRSHPKAARW 510 (1757)
Q Consensus 434 ~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~---DGtI~IWDl~t~k~~~~~~~w 510 (1757)
........-.+--.+++|.|.| +.|++.-. ...|.+|.-...+ ++.
T Consensus 247 ~L~stSE~v~gLe~~l~WrPsG--------------------------~lIA~~q~~~~~~~VvFfErNGLr-hge---- 295 (928)
T PF04762_consen 247 ELQSTSEPVDGLEGALSWRPSG--------------------------NLIASSQRLPDRHDVVFFERNGLR-HGE---- 295 (928)
T ss_pred eEEeccccCCCccCCccCCCCC--------------------------CEEEEEEEcCCCcEEEEEecCCcE-eee----
Confidence 1111122222333467788876 45555433 3445566433211 110
Q ss_pred cccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCc--eEEEEeCC-CCCeEE
Q 000268 511 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGS--LVHSLTGH-TESTYV 587 (1757)
Q Consensus 511 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgk--ll~~L~gH-~~~Vts 587 (1757)
+. .+.......|..++|++|+..||....|. |.+|-..+.. +.+.+... ...+..
T Consensus 296 ---F~------------------l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~ 353 (928)
T PF04762_consen 296 ---FT------------------LRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNF 353 (928)
T ss_pred ---Ee------------------cCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCc
Confidence 00 11112345689999999999999987665 9999987754 33344322 233455
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEeC----CCCc--------eEEEEe-----------------------ecCcceEEEE
Q 000268 588 LDVHPFNPRIAMSAGYDGKTIVWDI----WEGI--------PIRIYE-----------------------ISRFRLVDGK 632 (1757)
Q Consensus 588 LafSPdd~~lLaSgs~DG~IrIWDl----~tg~--------~l~~l~-----------------------~~~~~Vtsla 632 (1757)
+.|+|.....|..+..+|.+.++++ ..+. .+..+. .-..+|.+++
T Consensus 354 ~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~va 433 (928)
T PF04762_consen 354 VKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVA 433 (928)
T ss_pred eEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEE
Confidence 9999987777777777677755433 2110 111111 1245789999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCC
Q 000268 633 FSPDGASIILSDDVGQLYILNTGQG 657 (1757)
Q Consensus 633 fSPDGk~LAsgs~DG~I~IWdl~tG 657 (1757)
|++++..+|+-..||.|.+|.....
T Consensus 434 f~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 434 FSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred EeCCCCeEEEEECCCCEEEEEecCC
Confidence 9999998999999999999986543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2e-07 Score=114.16 Aligned_cols=292 Identities=14% Similarity=0.170 Sum_probs=196.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCC---------------ceEEecCCCCceEEEEecCCCCceEEEEEE
Q 000268 284 HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL---------------PISVLRGHTAAVTAIAFSPRPGSVYQLLSS 348 (1757)
Q Consensus 284 H~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~---------------~l~~l~gH~~~VtsLafSPdg~~~~~LaSg 348 (1757)
......|++|+....+||+|+.||.++|..+.+.. .-+++.||.+.|.-+.|....+ .|-+.
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q---KLTtS 89 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ---KLTTS 89 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc---ccccc
Confidence 34567899999999999999999999999876531 1245789999999999998876 88999
Q ss_pred eCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCC
Q 000268 349 SDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDD 428 (1757)
Q Consensus 349 s~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~ 428 (1757)
..+|.|.+|-+-.|.....+.. ......|.+++|+.+|..|+....||.|.|=.+......
T Consensus 90 Dt~GlIiVWmlykgsW~EEMiN------------------nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIw- 150 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEEMIN------------------NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIW- 150 (1189)
T ss_pred CCCceEEEEeeecccHHHHHhh------------------CcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceec-
Confidence 9999999999988876554422 123456899999999999999999998877666432111
Q ss_pred CCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccc
Q 000268 429 SDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAA 508 (1757)
Q Consensus 429 s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~ 508 (1757)
++. +.+ .....+.|+++. ..++.+-..|.+.++|....
T Consensus 151 ----gKe---Lkg--~~l~hv~ws~D~--------------------------~~~Lf~~ange~hlydnqgn------- 188 (1189)
T KOG2041|consen 151 ----GKE---LKG--QLLAHVLWSEDL--------------------------EQALFKKANGETHLYDNQGN------- 188 (1189)
T ss_pred ----chh---cch--heccceeecccH--------------------------HHHHhhhcCCcEEEeccccc-------
Confidence 111 111 123367788774 35555666788888887631
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEE--------cCCCCEEEEEecCCeEEEEECCCC-ceEEEEe
Q 000268 509 RWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW--------SLDNRFVLAAIMDCRICVWNAADG-SLVHSLT 579 (1757)
Q Consensus 509 ~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVaf--------SPDG~~LaSGs~DG~I~IWDl~tg-kll~~L~ 579 (1757)
+...+....... +. ..+......|-.+.| -||-..|+++..+|.+.|..-.+. .++-.-.
T Consensus 189 -F~~Kl~~~c~Vn--------~t--g~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dt 257 (1189)
T KOG2041|consen 189 -FERKLEKDCEVN--------GT--GIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDT 257 (1189)
T ss_pred -HHHhhhhceEEe--------ee--eeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEec
Confidence 111111100000 00 000001111223333 357788999999999988765443 3332222
Q ss_pred CCCCCeEEEEEecCCCcEEEEEeCC---------CcEEEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEE
Q 000268 580 GHTESTYVLDVHPFNPRIAMSAGYD---------GKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLY 650 (1757)
Q Consensus 580 gH~~~VtsLafSPdd~~lLaSgs~D---------G~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~ 650 (1757)
.-.|..+.|++ ++.+|+.+|.| +.|.++.. -|..+.+++.....|+.++|--.|-.+|.+- |+.|+
T Consensus 258 --gm~~vgakWnh-~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~Av-dsfiy 332 (1189)
T KOG2041|consen 258 --GMKIVGAKWNH-NGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAV-DSFIY 332 (1189)
T ss_pred --ccEeecceecC-CCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEEe-cceEE
Confidence 25578899999 77788777754 25666655 6888899988888999999998888888764 47888
Q ss_pred EEECC
Q 000268 651 ILNTG 655 (1757)
Q Consensus 651 IWdl~ 655 (1757)
+=++.
T Consensus 333 fanIR 337 (1189)
T KOG2041|consen 333 FANIR 337 (1189)
T ss_pred EEeec
Confidence 77764
|
|
| >KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-09 Score=148.37 Aligned_cols=91 Identities=13% Similarity=0.251 Sum_probs=85.3
Q ss_pred HHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhcCCCcHHHH
Q 000268 1652 FAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLST 1731 (1757)
Q Consensus 1652 l~kle~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~~~s~i~~ 1731 (1757)
+..++..+..+.++|+|..||+...+|+||.||+.||||.||+.+|.-++|.+.++|.-||+|||.||++||++ |+|++
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i~~ 1384 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPKEVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEIGR 1384 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChhhcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhhhh
Confidence 45566666778999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHH
Q 000268 1732 KIKRLSDLVTRT 1743 (1757)
Q Consensus 1732 ~a~~l~~~~~~~ 1743 (1757)
.+-.|..+|...
T Consensus 1385 ag~~l~~ff~~~ 1396 (1404)
T KOG1245|consen 1385 AGTCLRRFFHKR 1396 (1404)
T ss_pred hcchHHHHHHHH
Confidence 999999999864
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.8e-06 Score=98.33 Aligned_cols=170 Identities=16% Similarity=0.229 Sum_probs=121.4
Q ss_pred CCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCC-cEEEEeCCCCceEEEEeecCcceE
Q 000268 551 DNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDG-KTIVWDIWEGIPIRIYEISRFRLV 629 (1757)
Q Consensus 551 DG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG-~IrIWDl~tg~~l~~l~~~~~~Vt 629 (1757)
+|.+++..+. |.+.|.+...+-.++. +|.+.|.-..+.- ++.-++.|..|| .|-|+|..+++. ..+...-+.|.
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~ 405 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIE 405 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceE-EEeeCCccceE
Confidence 6777777765 6777877765655543 5677788777776 344667788999 899999976664 44555778999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCccccccccceeecCCCccEEEccCCceeecccccccCcCCCCCcccCCCCCC
Q 000268 630 DGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIP 709 (1757)
Q Consensus 630 slafSPDGk~LAsgs~DG~I~IWdl~tGe~~~~~~~~~~fs~D~r~Li~d~~g~vlD~~tql~phl~~l~~~L~D~~~~p 709 (1757)
+++.+|||++++++.....|++.|+.+|.... +|
T Consensus 406 av~vs~dGK~~vvaNdr~el~vididngnv~~-----------------------id----------------------- 439 (668)
T COG4946 406 AVKVSPDGKKVVVANDRFELWVIDIDNGNVRL-----------------------ID----------------------- 439 (668)
T ss_pred EEEEcCCCcEEEEEcCceEEEEEEecCCCeeE-----------------------ec-----------------------
Confidence 99999999999999999999999998874321 11
Q ss_pred CCCcchhhhhcccccccceEECCCCCeEEEeeCCCC-CCceEeeccCCcccccCCCc-cccceeeeCCCCCcc
Q 000268 710 YPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSL-DQGYQLQPLADLDVMIDPLP-EFIDVMDWEPENEVQ 780 (1757)
Q Consensus 710 ~p~~~Q~l~~~r~~~v~~lAfSPDG~~LAvg~d~s~-~~~v~l~~l~~~~~l~~plp-~~i~~~~~sPDg~~l 780 (1757)
+.+..-++..+|+|+++++|-+-..+. .+.+.+.++..++.+--..| ....+.+|-||+.+|
T Consensus 440 ---------kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryL 503 (668)
T COG4946 440 ---------KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYL 503 (668)
T ss_pred ---------ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEE
Confidence 000112457889999999999943332 46788999877664422333 345567888888775
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.9e-08 Score=117.61 Aligned_cols=169 Identities=14% Similarity=0.156 Sum_probs=138.2
Q ss_pred CCCCCEEEEEcCCceEEEEecCCCeEEEEEec---CCCCeEEEEEc--------------------CCCCEEEEEeCCce
Q 000268 252 DRSGRYVITGSDDRLVKIWSMETAYCLASCRG---HEGDITDLAVS--------------------SNNALVASASNDCI 308 (1757)
Q Consensus 252 SPDG~~LATGS~DGtIkIWDl~tg~~l~tL~g---H~~~VtsLafS--------------------PDg~lLASgS~DGt 308 (1757)
.|.+.++|....||.++||++.++++...+.. -++..++..|. .+...||-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 45678999999999999999999988777652 23344444441 23447888899999
Q ss_pred EEEEECCCCCceEEec--CCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCC
Q 000268 309 IRVWRLPDGLPISVLR--GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1757)
Q Consensus 309 IrVWDl~tg~~l~~l~--gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~ 386 (1757)
|.+|++..|+....+. +|.+.|.++.++.+-. .|.+++.|+.+..|+............
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~---ciyS~~ad~~v~~~~~~~~~~~~~~~~---------------- 142 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG---CIYSVGADLKVVYILEKEKVIIRIWKE---------------- 142 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccC---ceEecCCceeEEEEecccceeeeeecc----------------
Confidence 9999999998888775 6999999999998876 899999999999999988876655532
Q ss_pred CCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccC
Q 000268 387 SAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 454 (1757)
Q Consensus 387 ~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpd 454 (1757)
....+.+++++|||..+++++ +.|.+||+.+ .+.+..+.||.+.|.++.|.-.
T Consensus 143 ----~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~---------kevv~~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 143 ----QKPLVSSLCISPDGKILLTAS--RQIKVLDIET---------KEVVITFTGHGSPVRTLSFTTL 195 (541)
T ss_pred ----CCCccceEEEcCCCCEEEecc--ceEEEEEccC---------ceEEEEecCCCcceEEEEEEEe
Confidence 344588999999999999886 6899999976 5678999999999999999754
|
|
| >cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi | Back alignment and domain information |
|---|
Probab=98.83 E-value=4e-09 Score=105.79 Aligned_cols=44 Identities=27% Similarity=0.348 Sum_probs=40.9
Q ss_pred CCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhcCCCc
Q 000268 1684 FPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNT 1727 (1757)
Q Consensus 1684 i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~~~s 1727 (1757)
+=+||||+||++||+|+||.++++|++||++|+.||++||.++.
T Consensus 61 ~~y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~dr 104 (119)
T cd05491 61 KFYNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRER 104 (119)
T ss_pred eEeccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 34699999999999999999999999999999999999998843
|
TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.8e-08 Score=109.79 Aligned_cols=202 Identities=14% Similarity=0.285 Sum_probs=143.9
Q ss_pred CCCEEEEEECCCCCEEEEEcCCceEEEEecC----CCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCC
Q 000268 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSME----TAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL 318 (1757)
Q Consensus 243 ~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~----tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~ 318 (1757)
..+++++.+.+..+.|+.|-.+|++.-+.+. ....++....|...|..+.|+-...++++.+.|..+.--..+.|.
T Consensus 68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~ 147 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGN 147 (404)
T ss_pred CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCC
Confidence 4679999999999999999999999999764 344556666899999999999989999999999877655666665
Q ss_pred ceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEE
Q 000268 319 PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCC 398 (1757)
Q Consensus 319 ~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sl 398 (1757)
.+..+.- ....+++.|.- .+...|...|.|..-.+....+. +.....+|...+.++
T Consensus 148 ~lg~Y~~-~~~~t~~~~d~-----~~~fvGd~~gqvt~lr~~~~~~~------------------~i~~~~~h~~~~~~l 203 (404)
T KOG1409|consen 148 RLGGYNF-ETPASALQFDA-----LYAFVGDHSGQITMLKLEQNGCQ------------------LITTFNGHTGEVTCL 203 (404)
T ss_pred cccceEe-eccCCCCceee-----EEEEecccccceEEEEEeecCCc------------------eEEEEcCcccceEEE
Confidence 4432210 00001111100 02334444555555444322221 122345788899999
Q ss_pred EECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccc
Q 000268 399 AFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478 (1757)
Q Consensus 399 afSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~ 478 (1757)
+|.+....|.+|..|..|.+||+-.. ......+.+|...|..+...+..
T Consensus 204 ~Wd~~~~~LfSg~~d~~vi~wdigg~--------~g~~~el~gh~~kV~~l~~~~~t----------------------- 252 (404)
T KOG1409|consen 204 KWDPGQRLLFSGASDHSVIMWDIGGR--------KGTAYELQGHNDKVQALSYAQHT----------------------- 252 (404)
T ss_pred EEcCCCcEEEeccccCceEEEeccCC--------cceeeeeccchhhhhhhhhhhhh-----------------------
Confidence 99999999999999999999999432 23456778999999888776543
Q ss_pred cCCCcEEEEcCCCeEEEEeCCCCC
Q 000268 479 FCHDNIVTCSRDGSAIIWIPRSRR 502 (1757)
Q Consensus 479 ~~~~~LvSgS~DGtI~IWDl~t~k 502 (1757)
..+++++.||.|.+|++...+
T Consensus 253 ---~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 253 ---RQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred ---eeeeeccCCCeEEEEecccee
Confidence 589999999999999998644
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.8e-07 Score=103.31 Aligned_cols=279 Identities=15% Similarity=0.136 Sum_probs=178.7
Q ss_pred CceEEEEECCCCCceE--Ee-cCCCCceEEEEecCC--CCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCC
Q 000268 306 DCIIRVWRLPDGLPIS--VL-RGHTAAVTAIAFSPR--PGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGR 380 (1757)
Q Consensus 306 DGtIrVWDl~tg~~l~--~l-~gH~~~VtsLafSPd--g~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~ 380 (1757)
-|.+.+|++...+.+. .+ ...+..+..+.|+-- +.. ..|+-+...|.|.++..........+.
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~-~~l~~a~a~G~i~~~r~~~~~ss~~L~----------- 112 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGD-FNLLDAHARGQIQLYRNDEDESSVHLR----------- 112 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCcc-ceeeeccccceEEEEeeccceeeeeec-----------
Confidence 3678888887654433 22 223456677777642 222 367778888999998765433222111
Q ss_pred CCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccc
Q 000268 381 NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 460 (1757)
Q Consensus 381 ~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~ 460 (1757)
+.....-......++.|++.+..++++..+|.+.+-+.... ....++.++.|.-.++...|+-..
T Consensus 113 ---~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~-------~le~vq~wk~He~E~Wta~f~~~~----- 177 (339)
T KOG0280|consen 113 ---GLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEM-------VLEKVQTWKVHEFEAWTAKFSDKE----- 177 (339)
T ss_pred ---ccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEeccee-------eeeecccccccceeeeeeecccCC-----
Confidence 00001111113668899999999999999999985554321 233456788899988888887542
Q ss_pred ccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCC
Q 000268 461 SLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP 540 (1757)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~ 540 (1757)
++.+.+|+.||.+..||++... ...| ....-|.
T Consensus 178 --------------------pnlvytGgDD~~l~~~D~R~p~----~~i~-----------------------~n~kvH~ 210 (339)
T KOG0280|consen 178 --------------------PNLVYTGGDDGSLSCWDIRIPK----TFIW-----------------------HNSKVHT 210 (339)
T ss_pred --------------------CceEEecCCCceEEEEEecCCc----ceee-----------------------ecceeee
Confidence 4689999999999999998311 1111 1234477
Q ss_pred CCeeEEEEcC-CCCEEEEEecCCeEEEEECCC-CceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc--
Q 000268 541 RGVNMIVWSL-DNRFVLAAIMDCRICVWNAAD-GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI-- 616 (1757)
Q Consensus 541 ~~VtsVafSP-DG~~LaSGs~DG~I~IWDl~t-gkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~-- 616 (1757)
.+|.+|.-+| .+.+|++|+.|-.|++||.++ ++++..-. -.+.|+.+.++|.....|+.++.-.-.+|-++..+.
T Consensus 211 ~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e 289 (339)
T KOG0280|consen 211 SGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLE 289 (339)
T ss_pred cceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccc
Confidence 8899988775 678999999999999999985 66665433 347799999999655444444455557888876653
Q ss_pred ---eEEEEeecCcceEEEEEcCCCCEEEEE-eCCCeEE-EEECCCCcc
Q 000268 617 ---PIRIYEISRFRLVDGKFSPDGASIILS-DDVGQLY-ILNTGQGES 659 (1757)
Q Consensus 617 ---~l~~l~~~~~~VtslafSPDGk~LAsg-s~DG~I~-IWdl~tGe~ 659 (1757)
.+.....|.+-.....|......||++ ..|..|+ +|-..++++
T Consensus 290 ~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~~ 337 (339)
T KOG0280|consen 290 FQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGEP 337 (339)
T ss_pred hheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCCc
Confidence 233344455545555664444567775 3455544 777666643
|
|
| >KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.9e-09 Score=135.01 Aligned_cols=104 Identities=21% Similarity=0.321 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhcCC
Q 000268 1646 NKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGR 1725 (1757)
Q Consensus 1646 ~kLls~l~kle~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~~ 1725 (1757)
+++.+.+..+....+.+.+.|.+.+++...++|+||.+|.+||||.||+.||.+++|-.++.|+.|+..||.||+-||++
T Consensus 605 ~~~~s~~~~il~~l~~h~~awPf~~Pv~~~e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~~ 684 (720)
T KOG1472|consen 605 GKLFSAIQNILDQLQNHGDAWPFLKPVNKKEVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNGS 684 (720)
T ss_pred chhhHHHHhHHhhhhcCCccCCccCccccccCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCCc
Confidence 46677777777778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCC
Q 000268 1726 NTDLSTKIKRLSDLVTRTLSSLKA 1749 (1757)
Q Consensus 1726 ~s~i~~~a~~l~~~~~~~l~~~~~ 1749 (1757)
++..+++|..|+++|..+++....
T Consensus 685 ~~~y~k~~~~le~~~~~k~~~~i~ 708 (720)
T KOG1472|consen 685 DTQYYKCAQALEKFFLFKLNELIL 708 (720)
T ss_pred cchheecccchhhhhcchhhhhhh
Confidence 999999999999999999988754
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.6e-06 Score=105.64 Aligned_cols=267 Identities=14% Similarity=0.093 Sum_probs=159.6
Q ss_pred CCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceE--
Q 000268 254 SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVT-- 331 (1757)
Q Consensus 254 DG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~Vt-- 331 (1757)
++..++.++.+|.|..+|..+|+.+...... +.+.+.... .+..++.++.+|.|..||..+|+.+..+......+.
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~ 181 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR 181 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeec
Confidence 4677888889999999999999988776532 223221111 245677778899999999999998877654322211
Q ss_pred ---EEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcce-EEEEECCCCCEE
Q 000268 332 ---AIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI-FCCAFNANGTVF 407 (1757)
Q Consensus 332 ---sLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V-~slafSpdG~~L 407 (1757)
+..+. + . .++.+..+|.+..+|+.+|+.+.......+..... .. ....+ .+..+ .+..+
T Consensus 182 ~~~sp~~~-~-~---~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~------~~----~~~~~~~~p~~--~~~~v 244 (377)
T TIGR03300 182 GSASPVIA-D-G---GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTE------LE----RLVDVDGDPVV--DGGQV 244 (377)
T ss_pred CCCCCEEE-C-C---EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCc------hh----hhhccCCccEE--ECCEE
Confidence 11111 2 2 57788888999999999997655432211100000 00 00000 01111 24567
Q ss_pred EEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEE
Q 000268 408 VTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC 487 (1757)
Q Consensus 408 asGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSg 487 (1757)
++++.+|.++.||..+++ .+.... .. ...... ..++.++++
T Consensus 245 y~~~~~g~l~a~d~~tG~---------~~W~~~-~~-~~~~p~----------------------------~~~~~vyv~ 285 (377)
T TIGR03300 245 YAVSYQGRVAALDLRSGR---------VLWKRD-AS-SYQGPA----------------------------VDDNRLYVT 285 (377)
T ss_pred EEEEcCCEEEEEECCCCc---------EEEeec-cC-CccCce----------------------------EeCCEEEEE
Confidence 778889999999997643 111111 00 000111 113578888
Q ss_pred cCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEE
Q 000268 488 SRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVW 567 (1757)
Q Consensus 488 S~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IW 567 (1757)
+.+|.+..+|..+++. .|.... . ....+..... .+..|++++.+|.|+++
T Consensus 286 ~~~G~l~~~d~~tG~~-----~W~~~~---~--------------------~~~~~ssp~i--~g~~l~~~~~~G~l~~~ 335 (377)
T TIGR03300 286 DADGVVVALDRRSGSE-----LWKNDE---L--------------------KYRQLTAPAV--VGGYLVVGDFEGYLHWL 335 (377)
T ss_pred CCCCeEEEEECCCCcE-----EEcccc---c--------------------cCCccccCEE--ECCEEEEEeCCCEEEEE
Confidence 8999999999987542 222100 0 0001111112 46688999999999999
Q ss_pred ECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 000268 568 NAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVW 610 (1757)
Q Consensus 568 Dl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIW 610 (1757)
|..+|+.+..+..+...+..--... +++ |+.++.||.|..|
T Consensus 336 d~~tG~~~~~~~~~~~~~~~sp~~~-~~~-l~v~~~dG~l~~~ 376 (377)
T TIGR03300 336 SREDGSFVARLKTDGSGIASPPVVV-GDG-LLVQTRDGDLYAF 376 (377)
T ss_pred ECCCCCEEEEEEcCCCccccCCEEE-CCE-EEEEeCCceEEEe
Confidence 9999999999887665433322222 344 5567889988765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.7e-08 Score=130.46 Aligned_cols=225 Identities=12% Similarity=0.214 Sum_probs=167.7
Q ss_pred CCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCcc
Q 000268 297 NALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDA 376 (1757)
Q Consensus 297 g~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~ 376 (1757)
++.......++...-|..+.+.. .++.+-..|.++.-+|... +.++|+.||.|++|....++.+..+..
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~~--~~k~~v~~v~r~~sHp~~~---~Yltgs~dgsv~~~~w~~~~~v~~~rt------ 2248 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGASV--MIKHPVENVRRMTSHPSDP---YYLTGSQDGSVRMFEWGHGQQVVCFRT------ 2248 (2439)
T ss_pred cccCCcccCCccccceeccccee--EeecccCceeeecCCCCCc---eEEecCCCceEEEEeccCCCeEEEeec------
Confidence 34444444455555565433221 2334556788888888766 889999999999999988776655432
Q ss_pred ccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcc
Q 000268 377 VAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAV 456 (1757)
Q Consensus 377 ~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~ 456 (1757)
.....|+.+.|+.+|+.+.++..||.+.+|.+. .+.......|......+.|-..
T Consensus 2249 -------------~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~----------pk~~~s~qchnk~~~Df~Fi~s-- 2303 (2439)
T KOG1064|consen 2249 -------------AGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS----------PKPYTSWQCHNKALSDFRFIGS-- 2303 (2439)
T ss_pred -------------cCcchhhhhhhcccCCceeeeccCCceeecccC----------CcceeccccCCccccceeeeeh--
Confidence 123678899999999999999999999999984 3455667778888888888753
Q ss_pred ccccccccCCCCCCCCcccccccCCCcEEEE---cCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCc
Q 000268 457 ASRFSLADSSKEDSTPKFKNSWFCHDNIVTC---SRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPR 533 (1757)
Q Consensus 457 ~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSg---S~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~ 533 (1757)
.++++ +.++.+.+||.--.. ....+
T Consensus 2304 --------------------------~~~tag~s~d~~n~~lwDtl~~~--------------------------~~s~v 2331 (2439)
T KOG1064|consen 2304 --------------------------LLATAGRSSDNRNVCLWDTLLPP--------------------------MNSLV 2331 (2439)
T ss_pred --------------------------hhhccccCCCCCcccchhcccCc--------------------------cccee
Confidence 34443 347889999865210 01111
Q ss_pred eeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000268 534 QRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1757)
Q Consensus 534 ~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~ 613 (1757)
...|..+++++++.|..++|++|+.+|.|+|||++..+++++++. ++ ...++++|+..|.|+||++.
T Consensus 2332 --~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~--~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2332 --HTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD--TREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred --eeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh--hhheeeccCcccceEEEEcc
Confidence 167899999999999999999999999999999999888888775 32 35678899999999999999
Q ss_pred CCceEEEEe
Q 000268 614 EGIPIRIYE 622 (1757)
Q Consensus 614 tg~~l~~l~ 622 (1757)
.-..+.++.
T Consensus 2399 ~~~ll~~~p 2407 (2439)
T KOG1064|consen 2399 EFGLLHTFP 2407 (2439)
T ss_pred ccchhhcCc
Confidence 888887776
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.9e-08 Score=127.05 Aligned_cols=192 Identities=15% Similarity=0.257 Sum_probs=153.6
Q ss_pred EccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCC
Q 000268 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG 317 (1757)
Q Consensus 239 L~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~-gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg 317 (1757)
++.|-..|.|+.-+|...+-+||+.||.|++|.+..++.+..++ +....|+.+.|+.+|+.+..+..||.+.+|.+. .
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence 45567789999999999999999999999999999998888776 234889999999999999999999999999976 6
Q ss_pred CceEEecCCCCceEEEEecCCCCceEEEEEEe---CCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcc
Q 000268 318 LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS---DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1757)
Q Consensus 318 ~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs---~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~ 394 (1757)
++....+.|........|... .+++++ .++.+++||..-......+ ...|.+.
T Consensus 2283 k~~~s~qchnk~~~Df~Fi~s-----~~~tag~s~d~~n~~lwDtl~~~~~s~v-------------------~~~H~~g 2338 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIGS-----LLATAGRSSDNRNVCLWDTLLPPMNSLV-------------------HTCHDGG 2338 (2439)
T ss_pred cceeccccCCccccceeeeeh-----hhhccccCCCCCcccchhcccCccccee-------------------eeecCCC
Confidence 777888899999999999873 566654 5689999997533211111 1468889
Q ss_pred eEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcc
Q 000268 395 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 474 (1757)
Q Consensus 395 V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~ 474 (1757)
++++++.|..++|++|+.+|.|++||++.. +....+.. +.
T Consensus 2339 aT~l~~~P~~qllisggr~G~v~l~D~rqr---------ql~h~~~~---------~~---------------------- 2378 (2439)
T KOG1064|consen 2339 ATVLAYAPKHQLLISGGRKGEVCLFDIRQR---------QLRHTFQA---------LD---------------------- 2378 (2439)
T ss_pred ceEEEEcCcceEEEecCCcCcEEEeehHHH---------HHHHHhhh---------hh----------------------
Confidence 999999999999999999999999999642 12222111 11
Q ss_pred cccccCCCcEEEEcCCCeEEEEeCCC
Q 000268 475 KNSWFCHDNIVTCSRDGSAIIWIPRS 500 (1757)
Q Consensus 475 ~~~~~~~~~LvSgS~DGtI~IWDl~t 500 (1757)
...+|++|+..|.++||++..
T Consensus 2379 -----~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2379 -----TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred -----hhheeeccCcccceEEEEccc
Confidence 026899999999999999985
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.8e-06 Score=102.67 Aligned_cols=311 Identities=13% Similarity=0.072 Sum_probs=182.5
Q ss_pred CCEEEEEcCCceEEEEecCCCeEEEEEecCCC----------Ce-EEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEe
Q 000268 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHEG----------DI-TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL 323 (1757)
Q Consensus 255 G~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~----------~V-tsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l 323 (1757)
+..|++++.+|.|.-+|..+|+.+........ .+ ..++. ++..|+.++.+|.|..+|..+|+.+...
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 55777778889999999999988876542210 00 01111 3556777888999999999999988876
Q ss_pred cCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCC
Q 000268 324 RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN 403 (1757)
Q Consensus 324 ~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpd 403 (1757)
........+.... ++ .++.+..+|.|..+|..+|+.+.......+.. ........+ .. +
T Consensus 147 ~~~~~~~ssP~v~-~~----~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~-----------~~~~~~sP~----v~-~ 205 (394)
T PRK11138 147 KVAGEALSRPVVS-DG----LVLVHTSNGMLQALNESDGAVKWTVNLDVPSL-----------TLRGESAPA----TA-F 205 (394)
T ss_pred cCCCceecCCEEE-CC----EEEEECCCCEEEEEEccCCCEeeeecCCCCcc-----------cccCCCCCE----EE-C
Confidence 5432211111222 22 67778889999999999998776664321100 000001111 11 2
Q ss_pred CCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCC-CCceEEEEccCccccccccccCCCCCCCCcccccccCCC
Q 000268 404 GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE-NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHD 482 (1757)
Q Consensus 404 G~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~-~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1757)
+ .+++++.+|.+..+|..+++..-........ ..+. .....+..+| ...++
T Consensus 206 ~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~---~~~~~~~~~~~~~sP------------------------~v~~~ 257 (394)
T PRK11138 206 G-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPT---GATEIDRLVDVDTTP------------------------VVVGG 257 (394)
T ss_pred C-EEEEEcCCCEEEEEEccCChhhheeccccCC---CccchhcccccCCCc------------------------EEECC
Confidence 3 4666777888888888765421110000000 0000 0000000001 11135
Q ss_pred cEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCC
Q 000268 483 NIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC 562 (1757)
Q Consensus 483 ~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG 562 (1757)
.++.++.+|.+..+|+.+++ ..|...+. ....++ ..+..|+.++.+|
T Consensus 258 ~vy~~~~~g~l~ald~~tG~-----~~W~~~~~--------------------------~~~~~~--~~~~~vy~~~~~g 304 (394)
T PRK11138 258 VVYALAYNGNLVALDLRSGQ-----IVWKREYG--------------------------SVNDFA--VDGGRIYLVDQND 304 (394)
T ss_pred EEEEEEcCCeEEEEECCCCC-----EEEeecCC--------------------------CccCcE--EECCEEEEEcCCC
Confidence 67778889999999998765 23432110 000111 2466788888899
Q ss_pred eEEEEECCCCceEEEEeCCCC-CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCcceEE-EEEcCCCCEE
Q 000268 563 RICVWNAADGSLVHSLTGHTE-STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVD-GKFSPDGASI 640 (1757)
Q Consensus 563 ~I~IWDl~tgkll~~L~gH~~-~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~Vts-lafSPDGk~L 640 (1757)
.|..+|..+|+.+.....-.. ...+..+. ++ .|+.++.||.|.+.|..+|+.+.........+.+ ..+ .+..|
T Consensus 305 ~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~g-~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l 379 (394)
T PRK11138 305 RVYALDTRGGVELWSQSDLLHRLLTAPVLY--NG-YLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKL 379 (394)
T ss_pred eEEEEECCCCcEEEcccccCCCcccCCEEE--CC-EEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEE
Confidence 999999999988765432111 12222222 34 4556788999999999999999888654333332 122 24578
Q ss_pred EEEeCCCeEEEEEC
Q 000268 641 ILSDDVGQLYILNT 654 (1757)
Q Consensus 641 Asgs~DG~I~IWdl 654 (1757)
++++.+|.|+.++.
T Consensus 380 ~v~t~~G~l~~~~~ 393 (394)
T PRK11138 380 LIQARDGTVYAITR 393 (394)
T ss_pred EEEeCCceEEEEeC
Confidence 88899999998874
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.5e-06 Score=113.08 Aligned_cols=116 Identities=14% Similarity=0.076 Sum_probs=83.3
Q ss_pred eeEEEEcCCCCE-EEEEecCCeEEEEECCCCceEEEEeC-------------C--------CCCeEEEEEecCCCcEEEE
Q 000268 543 VNMIVWSLDNRF-VLAAIMDCRICVWNAADGSLVHSLTG-------------H--------TESTYVLDVHPFNPRIAMS 600 (1757)
Q Consensus 543 VtsVafSPDG~~-LaSGs~DG~I~IWDl~tgkll~~L~g-------------H--------~~~VtsLafSPdd~~lLaS 600 (1757)
...|+|+|+|++ +++-+.++.|++||+.++.......+ + -.....+++++ ++.++++
T Consensus 742 P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVA 820 (1057)
T PLN02919 742 PSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVA 820 (1057)
T ss_pred ccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEE
Confidence 466889999884 44556678999999887653221100 0 11235788998 5668888
Q ss_pred EeCCCcEEEEeCCCCceEEEEeec-------------CcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc
Q 000268 601 AGYDGKTIVWDIWEGIPIRIYEIS-------------RFRLVDGKFSPDGASIILSDDVGQLYILNTGQGES 659 (1757)
Q Consensus 601 gs~DG~IrIWDl~tg~~l~~l~~~-------------~~~VtslafSPDGk~LAsgs~DG~I~IWdl~tGe~ 659 (1757)
-..++.|++||..++........+ -.....++++++|+++++-+.++.|++|++.+++.
T Consensus 821 Ds~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 821 DSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 888999999999887765443211 11456899999999888888899999999988754
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.8e-06 Score=112.91 Aligned_cols=275 Identities=12% Similarity=0.110 Sum_probs=164.1
Q ss_pred EEEECCC-CCEEEEEcCCceEEEEecCCCeEEEEEec--C------------CCCeEEEEEcCCCCEEEEEe-CCceEEE
Q 000268 248 CAIFDRS-GRYVITGSDDRLVKIWSMETAYCLASCRG--H------------EGDITDLAVSSNNALVASAS-NDCIIRV 311 (1757)
Q Consensus 248 ~VaFSPD-G~~LATGS~DGtIkIWDl~tg~~l~tL~g--H------------~~~VtsLafSPDg~lLASgS-~DGtIrV 311 (1757)
.++++++ |+++++-+.++.|.+||.. |..+..+.+ . -.....|++.+++..|+++. ..+.|++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 5788874 6677777788999999976 554444432 1 12357899999888665554 4578999
Q ss_pred EECCCCCceEEecCC-----------------CCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCC
Q 000268 312 WRLPDGLPISVLRGH-----------------TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPS 374 (1757)
Q Consensus 312 WDl~tg~~l~~l~gH-----------------~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~ 374 (1757)
+|+.++. +.++.+- -...+.|+|+|++. .++++.+.++.|++||..++... .+.-....
T Consensus 651 id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g--~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~ 726 (1057)
T PLN02919 651 IDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNE--KVYIAMAGQHQIWEYNISDGVTR-VFSGDGYE 726 (1057)
T ss_pred EecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCC--eEEEEECCCCeEEEEECCCCeEE-EEecCCcc
Confidence 9987764 3333210 12346899999544 26677778899999999876532 11100000
Q ss_pred ccccCCCCCCCCCCCCCCcceEEEEECCCCC-EEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEcc
Q 000268 375 DAVAGRNMAPSSSAGPQSHQIFCCAFNANGT-VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSG 453 (1757)
Q Consensus 375 ~~~~g~~~~~~~~~~~~~~~V~slafSpdG~-~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSp 453 (1757)
....+ .......-.....|+|+|+|. ++++.+.++.|++||+.++. ...+.+ ...+ + +
T Consensus 727 ~~~~g-----~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~----------~~~~~g-g~~~----~-~ 785 (1057)
T PLN02919 727 RNLNG-----SSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG----------SRLLAG-GDPT----F-S 785 (1057)
T ss_pred ccCCC-----CccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc----------EEEEEe-cccc----c-C
Confidence 00000 000011223467899999987 44555667899999985421 000000 0000 0 0
Q ss_pred CccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCc
Q 000268 454 CAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPR 533 (1757)
Q Consensus 454 dg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~ 533 (1757)
. ...-.|..||.. .
T Consensus 786 ~---------------------------~l~~fG~~dG~g---------------------------------------~ 799 (1057)
T PLN02919 786 D---------------------------NLFKFGDHDGVG---------------------------------------S 799 (1057)
T ss_pred c---------------------------ccccccCCCCch---------------------------------------h
Confidence 0 000001111100 0
Q ss_pred eeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEe-------------CCCCCeEEEEEecCCCcEEEE
Q 000268 534 QRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT-------------GHTESTYVLDVHPFNPRIAMS 600 (1757)
Q Consensus 534 ~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~-------------gH~~~VtsLafSPdd~~lLaS 600 (1757)
.. .......++++++|.++++-+.+++|++||..++....... ++-.....|++++ +++++++
T Consensus 800 ~~---~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVa 875 (1057)
T PLN02919 800 EV---LLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVA 875 (1057)
T ss_pred hh---hccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEE
Confidence 00 01123478999999999999999999999998876653321 1122467899999 5678888
Q ss_pred EeCCCcEEEEeCCCCceE
Q 000268 601 AGYDGKTIVWDIWEGIPI 618 (1757)
Q Consensus 601 gs~DG~IrIWDl~tg~~l 618 (1757)
-+.++.|++||+.+++..
T Consensus 876 Dt~Nn~Irvid~~~~~~~ 893 (1057)
T PLN02919 876 DTNNSLIRYLDLNKGEAA 893 (1057)
T ss_pred ECCCCEEEEEECCCCccc
Confidence 889999999999988753
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.4e-06 Score=102.35 Aligned_cols=202 Identities=9% Similarity=0.018 Sum_probs=122.1
Q ss_pred CeeEEEEcCCCCE-EEEEec---CCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCC--CcEEEEeCCCC
Q 000268 542 GVNMIVWSLDNRF-VLAAIM---DCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYD--GKTIVWDIWEG 615 (1757)
Q Consensus 542 ~VtsVafSPDG~~-LaSGs~---DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~D--G~IrIWDl~tg 615 (1757)
.+....|||||+. ++..+. +..|+++|+.+|+...... ..+.+....|+|++.+++++.+.+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 5678899999985 554443 3569999998887655443 455567788999776777776555 45777788777
Q ss_pred ceEEEEeecCcceEEEEEcCCCCEEEEEeCC-C--eEEEEECCCCcccccc---ccceeecCCCccEEEccCCceeeccc
Q 000268 616 IPIRIYEISRFRLVDGKFSPDGASIILSDDV-G--QLYILNTGQGESQKDA---KYDQFFLGDYRPLVQDTYGNVLDQET 689 (1757)
Q Consensus 616 ~~l~~l~~~~~~VtslafSPDGk~LAsgs~D-G--~I~IWdl~tGe~~~~~---~~~~~fs~D~r~Li~d~~g~vlD~~t 689 (1757)
.... +..+........|+|||+.|+..+.. | .|+++++.+|+..+.. .....|+||++.|+......--+ .
T Consensus 268 ~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SPDG~~Ia~~~~~~~~~--~ 344 (419)
T PRK04043 268 TLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKNYIVYSSRETNNE--F 344 (419)
T ss_pred cEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcCceECCCCCEEEEEEcCCCcc--c
Confidence 6443 43333334456899999988876532 3 7999999887663211 12347999999988554221000 0
Q ss_pred ccccCcCCCCCcccCCCCCCCCCcchhhhhcccccccceEECCCCCeEEEeeCCCCCCceEeeccCCc
Q 000268 690 QLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADL 757 (1757)
Q Consensus 690 ql~phl~~l~~~L~D~~~~p~p~~~Q~l~~~r~~~v~~lAfSPDG~~LAvg~d~s~~~~v~l~~l~~~ 757 (1757)
. .. ...-.+.|.... ..+.|..+. .....+|||||++||..........+.+.++...
T Consensus 345 ~--~~--~~~I~v~d~~~g----~~~~LT~~~--~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 345 G--KN--TFNLYLISTNSD----YIRRLTANG--VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred C--CC--CcEEEEEECCCC----CeEECCCCC--CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 0 00 001112222111 112222221 1235789999999999855544445666666443
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.8e-08 Score=119.76 Aligned_cols=201 Identities=18% Similarity=0.284 Sum_probs=139.1
Q ss_pred CCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccc
Q 000268 385 SSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLAD 464 (1757)
Q Consensus 385 ~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~ 464 (1757)
...+..+....+|++|+.+.++|++|+..|.|++|++.+| .......+|...|+.+.-+-+|
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG---------~~e~s~ncH~SavT~vePs~dg--------- 1155 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG---------SMEESVNCHQSAVTLVEPSVDG--------- 1155 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCc---------cccccccccccccccccccCCc---------
Confidence 3445567788999999999999999999999999999774 3455678899999998887765
Q ss_pred CCCCCCCCcccccccCCCcEEEEc-CCC-eEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCC
Q 000268 465 SSKEDSTPKFKNSWFCHDNIVTCS-RDG-SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRG 542 (1757)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~LvSgS-~DG-tI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~ 542 (1757)
..+++.+ ... -..+|++.+ .+++...+ ..
T Consensus 1156 -----------------s~~Ltsss~S~PlsaLW~~~s----------------------------~~~~~Hsf----~e 1186 (1516)
T KOG1832|consen 1156 -----------------STQLTSSSSSSPLSALWDASS----------------------------TGGPRHSF----DE 1186 (1516)
T ss_pred -----------------ceeeeeccccCchHHHhcccc----------------------------ccCccccc----cc
Confidence 3333332 222 456787764 11111111 22
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEE-eC---CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE
Q 000268 543 VNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL-TG---HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 618 (1757)
Q Consensus 543 VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L-~g---H~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l 618 (1757)
-.++.|+..-..-+.|+.-..+.|||+.++..+.++ .+ ..-.-+++.|+|.+..+| .|| .+||+...+.+
T Consensus 1187 d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl----ndG--vLWDvR~~~aI 1260 (1516)
T KOG1832|consen 1187 DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL----NDG--VLWDVRIPEAI 1260 (1516)
T ss_pred cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe----eCc--eeeeeccHHHH
Confidence 356778776665566666668999999999877663 22 222336789999554443 465 58999988888
Q ss_pred EEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCccccccc
Q 000268 619 RIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAK 664 (1757)
Q Consensus 619 ~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~tGe~~~~~~ 664 (1757)
+.|.... --..-.|+|.|.-++.-+. |||+.+-+.+..+|
T Consensus 1261 h~FD~ft-~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1261 HRFDQFT-DYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVP 1300 (1516)
T ss_pred hhhhhhe-ecccccccCCCceEEeech-----hhhhHHHHHHhcCc
Confidence 8876443 1224589999999988664 89998877666554
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.3e-05 Score=88.54 Aligned_cols=278 Identities=13% Similarity=0.059 Sum_probs=168.0
Q ss_pred cCCCCEEEEEECCCCCEEEEEcC---CceEEEEecCC--CeEEEE--EecCCCCeEEEEEcCCCCEEEEEeC-CceEEEE
Q 000268 241 GHRNAVYCAIFDRSGRYVITGSD---DRLVKIWSMET--AYCLAS--CRGHEGDITDLAVSSNNALVASASN-DCIIRVW 312 (1757)
Q Consensus 241 GH~~~V~~VaFSPDG~~LATGS~---DGtIkIWDl~t--g~~l~t--L~gH~~~VtsLafSPDg~lLASgS~-DGtIrVW 312 (1757)
.+.+..+=|+|+|++++|.++-. +|.|..|.++. |++... ......+-+.++++++|++|+++.. .|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 45677888999999999988744 57787777764 554332 2222334489999999999999876 4889999
Q ss_pred ECCC-CCceE--EecCCCCc----------eEEEEecCCCCceEEEEEEeC-CCcEEEEecCCCCccceeecCCCCcccc
Q 000268 313 RLPD-GLPIS--VLRGHTAA----------VTAIAFSPRPGSVYQLLSSSD-DGTCRIWDARYSQFSPRIYIPRPSDAVA 378 (1757)
Q Consensus 313 Dl~t-g~~l~--~l~gH~~~----------VtsLafSPdg~~~~~LaSgs~-DGtIrIWDl~tg~~~~~i~l~~~~~~~~ 378 (1757)
-+.. |.+.. .+..|.+. +....|.|+++ +|++... --.|.+|++..|.+......
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~---~l~v~DLG~Dri~~y~~~dg~L~~~~~~-------- 185 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGR---YLVVPDLGTDRIFLYDLDDGKLTPADPA-------- 185 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCC---EEEEeecCCceEEEEEcccCcccccccc--------
Confidence 9865 53322 22235555 88999999997 5665532 23599999998775443211
Q ss_pred CCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeC-CceEEEecCCCCCCCCCCCCCcceeeec---CCCCCceEEEEccC
Q 000268 379 GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTLARVWNACKPNTDDSDQPNHEIDVLS---GHENDVNYVQFSGC 454 (1757)
Q Consensus 379 g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~-DG~IrVWDl~t~~~~~s~~~~~~i~~l~---gH~~~V~sLafSpd 454 (1757)
.-........|+|+|++++..+.+. +++|-+|....... .....+.+..+. .-.....+|.++++
T Consensus 186 ---------~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g--~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 186 ---------EVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVG--KFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ---------ccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCc--eEEEeeeeccCccccCCCCceeEEEECCC
Confidence 1123455788999999998776654 89999999865210 011111111111 11234556777777
Q ss_pred ccccccccccCCCCCCCCcccccccCCCcEEEEcC-CCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCc
Q 000268 455 AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR-DGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPR 533 (1757)
Q Consensus 455 g~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~-DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~ 533 (1757)
| .+|.++.. ...|.+|.+....... ...
T Consensus 255 G--------------------------rFLYasNRg~dsI~~f~V~~~~g~L-------------------------~~~ 283 (346)
T COG2706 255 G--------------------------RFLYASNRGHDSIAVFSVDPDGGKL-------------------------ELV 283 (346)
T ss_pred C--------------------------CEEEEecCCCCeEEEEEEcCCCCEE-------------------------EEE
Confidence 6 33333322 2356666554311000 001
Q ss_pred eeecCCCCCeeEEEEcCCCCEEEEEecCC-eEEEEEC--CCCceEEEEe-CCCCCeEEEEEe
Q 000268 534 QRILPTPRGVNMIVWSLDNRFVLAAIMDC-RICVWNA--ADGSLVHSLT-GHTESTYVLDVH 591 (1757)
Q Consensus 534 ~~l~~h~~~VtsVafSPDG~~LaSGs~DG-~I~IWDl--~tgkll~~L~-gH~~~VtsLafS 591 (1757)
.....+....+.+.|++.|++|+++..++ .|.||.. .+|++..... .......||.|.
T Consensus 284 ~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 284 GITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred EEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 11222333467789999999999988654 5777765 4566544333 233344566553
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.4e-06 Score=96.90 Aligned_cols=281 Identities=13% Similarity=0.222 Sum_probs=169.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCC-----CceEEecCCC------------CceEEEEecCCCCceEEEE
Q 000268 284 HEGDITDLAVSSNNALVASASNDCIIRVWRLPDG-----LPISVLRGHT------------AAVTAIAFSPRPGSVYQLL 346 (1757)
Q Consensus 284 H~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg-----~~l~~l~gH~------------~~VtsLafSPdg~~~~~La 346 (1757)
....|+++.|...|.+|++|...|.|.++.-... +....+++|. ..|..|.|..+++.. .++
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~-hFL 103 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRN-HFL 103 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcc-eEE
Confidence 3467999999999999999999999999975433 2233455664 357888888776543 666
Q ss_pred EEeCCCcEEEEecCCCCccce--eec------CCCCcccc------CCC--------CCC-CCCCCCCCcceEEEEECCC
Q 000268 347 SSSDDGTCRIWDARYSQFSPR--IYI------PRPSDAVA------GRN--------MAP-SSSAGPQSHQIFCCAFNAN 403 (1757)
Q Consensus 347 Sgs~DGtIrIWDl~tg~~~~~--i~l------~~~~~~~~------g~~--------~~~-~~~~~~~~~~V~slafSpd 403 (1757)
..+.|.+|++|.+....+... -.+ +....... ++. ..+ ......|...|.++.|+.|
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 777899999999875532111 000 00000000 000 000 1122456777899999999
Q ss_pred CCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCC-----CCCceEEEEccCccccccccccCCCCCCCCcccccc
Q 000268 404 GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH-----ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478 (1757)
Q Consensus 404 G~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH-----~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~ 478 (1757)
...++++ .|=.|.+|++..... .-.+..+..| ..-|++..|+|..
T Consensus 184 ~et~lSa-DdLrINLWnl~i~D~------sFnIVDiKP~nmeeLteVItSaeFhp~~----------------------- 233 (460)
T COG5170 184 KETLLSA-DDLRINLWNLEIIDG------SFNIVDIKPHNMEELTEVITSAEFHPEM----------------------- 233 (460)
T ss_pred hheeeec-cceeeeeccccccCC------ceEEEeccCccHHHHHHHHhhcccCHhH-----------------------
Confidence 8888776 577899999853211 1112222222 2345566666643
Q ss_pred cCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEE
Q 000268 479 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA 558 (1757)
Q Consensus 479 ~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSG 558 (1757)
...+...+..|.|++-|++........ ...+.+ ...+....-+......|..+.|+++|++|++-
T Consensus 234 --cn~fmYSsSkG~Ikl~DlRq~alcdn~---~klfe~----------~~D~v~~~ff~eivsSISD~kFs~ngryIlsR 298 (460)
T COG5170 234 --CNVFMYSSSKGEIKLNDLRQSALCDNS---KKLFEL----------TIDGVDVDFFEEIVSSISDFKFSDNGRYILSR 298 (460)
T ss_pred --cceEEEecCCCcEEehhhhhhhhccCc---hhhhhh----------ccCcccchhHHHHhhhhcceEEcCCCcEEEEe
Confidence 257788889999999999853211000 000000 00111111222334568889999999999987
Q ss_pred ecCCeEEEEECCC-CceEEEEeCCC------------CCe---EEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000268 559 IMDCRICVWNAAD-GSLVHSLTGHT------------EST---YVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1757)
Q Consensus 559 s~DG~I~IWDl~t-gkll~~L~gH~------------~~V---tsLafSPdd~~lLaSgs~DG~IrIWDl 612 (1757)
.. -+|+|||... ..++.++.-|. +.| ..+.||- +...+++|+.....-|+-+
T Consensus 299 dy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSg-d~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 299 DY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSG-DDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred cc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecC-Ccccccccccccceeeecc
Confidence 65 5899999975 45677665442 233 3467776 4556668888777776653
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.5e-05 Score=90.82 Aligned_cols=269 Identities=17% Similarity=0.135 Sum_probs=172.7
Q ss_pred CceEEEEecCCCeEEE--EE-ecCCCCeEEEEEcC---CCC-EEEEEeCCceEEEEECCCCCceEEecCCC------Cce
Q 000268 264 DRLVKIWSMETAYCLA--SC-RGHEGDITDLAVSS---NNA-LVASASNDCIIRVWRLPDGLPISVLRGHT------AAV 330 (1757)
Q Consensus 264 DGtIkIWDl~tg~~l~--tL-~gH~~~VtsLafSP---Dg~-lLASgS~DGtIrVWDl~tg~~l~~l~gH~------~~V 330 (1757)
-|.+.++++...+.+. ++ ......+..|.|.- +|. .|+-+-..|.|.++...-......|++-. ...
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 4678889887665443 11 23445677777763 454 56667778999999865444333443322 124
Q ss_pred EEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECC-CCCEEEE
Q 000268 331 TAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NGTVFVT 409 (1757)
Q Consensus 331 tsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSp-dG~~Las 409 (1757)
.++.|++.+. .++++-.+|.+.+-+.....+.. ......|...++.+.|+. +.+++.+
T Consensus 125 lslD~~~~~~---~i~vs~s~G~~~~v~~t~~~le~------------------vq~wk~He~E~Wta~f~~~~pnlvyt 183 (339)
T KOG0280|consen 125 LSLDISTSGT---KIFVSDSRGSISGVYETEMVLEK------------------VQTWKVHEFEAWTAKFSDKEPNLVYT 183 (339)
T ss_pred eEEEeeccCc---eEEEEcCCCcEEEEecceeeeee------------------cccccccceeeeeeecccCCCceEEe
Confidence 5677888776 78888889998855544332211 223456888899999986 4478999
Q ss_pred eeCCceEEEecCCCCCCCCCCCCCcce-eeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEc
Q 000268 410 GSSDTLARVWNACKPNTDDSDQPNHEI-DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCS 488 (1757)
Q Consensus 410 Gs~DG~IrVWDl~t~~~~~s~~~~~~i-~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS 488 (1757)
|+.|+.+..||++.++ ..+ ....-|...|.+|.-+|.. +..|++|+
T Consensus 184 GgDD~~l~~~D~R~p~--------~~i~~n~kvH~~GV~SI~ss~~~-------------------------~~~I~TGs 230 (339)
T KOG0280|consen 184 GGDDGSLSCWDIRIPK--------TFIWHNSKVHTSGVVSIYSSPPK-------------------------PTYIATGS 230 (339)
T ss_pred cCCCceEEEEEecCCc--------ceeeecceeeecceEEEecCCCC-------------------------CceEEEec
Confidence 9999999999997432 222 2356788889999887642 46899999
Q ss_pred CCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCC-EEEEEecCCeEEEE
Q 000268 489 RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR-FVLAAIMDCRICVW 567 (1757)
Q Consensus 489 ~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~-~LaSGs~DG~I~IW 567 (1757)
.|-.|++||.+.-. .++.. ....++|..+.++|.-. .|+.+++-.-.+|.
T Consensus 231 YDe~i~~~DtRnm~----------------------------kPl~~-~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~ 281 (339)
T KOG0280|consen 231 YDECIRVLDTRNMG----------------------------KPLFK-AKVGGGVWRIKHHPEIFHRLLAACMHNGAKIL 281 (339)
T ss_pred cccceeeeehhccc----------------------------Ccccc-CccccceEEEEecchhhhHHHHHHHhcCceEE
Confidence 99999999998411 01100 11227799999988543 23334444456777
Q ss_pred ECCCCc-----eEEEEeCCCCCeEEEEEecCCCcEEEEEe-CCCcEE-EEeCCCCc
Q 000268 568 NAADGS-----LVHSLTGHTESTYVLDVHPFNPRIAMSAG-YDGKTI-VWDIWEGI 616 (1757)
Q Consensus 568 Dl~tgk-----ll~~L~gH~~~VtsLafSPdd~~lLaSgs-~DG~Ir-IWDl~tg~ 616 (1757)
+...+. .....+.|.+-++.-.|.. -..+|+|++ +|..++ +|-..++.
T Consensus 282 ~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~-~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 282 DSSDKVLEFQIVLPSDKIHDSLCYGGDWDS-KDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred Eecccccchheeeeccccccceeecccccc-ccceeeeeeccccceeeeeeeccCC
Confidence 765542 3345567777777777744 234566654 677754 77554443
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.1e-07 Score=106.03 Aligned_cols=290 Identities=16% Similarity=0.228 Sum_probs=182.4
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCC-------CCceEEecCCCCceEEEEecCCCCceEEEEEEeC
Q 000268 278 LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPD-------GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD 350 (1757)
Q Consensus 278 l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~t-------g~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~ 350 (1757)
+..+.||...|..++--.+.+-+++++.|.+|++|.+.. ..+..+++.|..+|.++.|..+.. ++ ++.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr---~i--~Sc 802 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR---SI--ASC 802 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc---ee--eec
Confidence 445779999999998887888899999999999999853 346678889999999999999865 44 445
Q ss_pred CCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEe-eCCceEEEecCCCCCCCCC
Q 000268 351 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG-SSDTLARVWNACKPNTDDS 429 (1757)
Q Consensus 351 DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasG-s~DG~IrVWDl~t~~~~~s 429 (1757)
||.|.+||.-.++.+..+.- ....+..+.|.|+- +-+...+++| +...+|+++|.+......
T Consensus 803 D~giHlWDPFigr~Laq~~d---------------apk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~- 865 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLAQMED---------------APKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTC- 865 (1034)
T ss_pred cCcceeecccccchhHhhhc---------------CcccCCCceeEecc-cCcchheeeeccchhhheeeeccccccee-
Confidence 78899999877766553321 00111222344332 2244455555 668899999997643210
Q ss_pred CCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCccccc
Q 000268 430 DQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAAR 509 (1757)
Q Consensus 430 ~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~ 509 (1757)
.-.+....+....+.+++..+.| +.++.+-..|+|.+.|.++++.. ..
T Consensus 866 ---E~kVcna~~Pna~~R~iaVa~~G--------------------------N~lAa~LSnGci~~LDaR~G~vI---Ns 913 (1034)
T KOG4190|consen 866 ---ELKVCNAPGPNALTRAIAVADKG--------------------------NKLAAALSNGCIAILDARNGKVI---NS 913 (1034)
T ss_pred ---eEEeccCCCCchheeEEEeccCc--------------------------chhhHHhcCCcEEEEecCCCcee---cc
Confidence 11122224555678888888776 78999999999999999986522 22
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEE-EECCCCceEEEEeCCCCCeEEE
Q 000268 510 WTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICV-WNAADGSLVHSLTGHTESTYVL 588 (1757)
Q Consensus 510 w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~I-WDl~tgkll~~L~gH~~~VtsL 588 (1757)
|... ......++ .|..+.|+....|.++.| |-..+|....+.+....+..-+
T Consensus 914 wrpm--------------------------ecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepahfl 966 (1034)
T KOG4190|consen 914 WRPM--------------------------ECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL 966 (1034)
T ss_pred CCcc--------------------------cchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhh
Confidence 3210 01111111 356667777778888888 8877776655555433322111
Q ss_pred EEecCCCcEEEEEeCCCcEEEEeCCC-C---ceEEEEe--ecCcceEEEEEcCCCCEEEEEeCCCeEEE
Q 000268 589 DVHPFNPRIAMSAGYDGKTIVWDIWE-G---IPIRIYE--ISRFRLVDGKFSPDGASIILSDDVGQLYI 651 (1757)
Q Consensus 589 afSPdd~~lLaSgs~DG~IrIWDl~t-g---~~l~~l~--~~~~~VtslafSPDGk~LAsgs~DG~I~I 651 (1757)
.- - ++ -++++.....+.||--.. . ..+..+. ...+..++++.-|-..-+.+|...|.|.+
T Consensus 967 qs-v-gp-SLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 967 QS-V-GP-SLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred hc-c-Cc-eeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 11 1 22 344555555667774211 1 1111111 23455678888887777778888888865
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00048 Score=81.31 Aligned_cols=274 Identities=11% Similarity=0.127 Sum_probs=165.2
Q ss_pred CceEEEEECCCC--Cc-eEEecCCCCceEEEEecCCCCceEEEEEEe---CCCcEEEEecCC--CCccceeecCCCCccc
Q 000268 306 DCIIRVWRLPDG--LP-ISVLRGHTAAVTAIAFSPRPGSVYQLLSSS---DDGTCRIWDARY--SQFSPRIYIPRPSDAV 377 (1757)
Q Consensus 306 DGtIrVWDl~tg--~~-l~~l~gH~~~VtsLafSPdg~~~~~LaSgs---~DGtIrIWDl~t--g~~~~~i~l~~~~~~~ 377 (1757)
+.-|.+|++.+. +. ...+-.+.+.++-|+|+|+.+ +|.++. .+|.|..|.+.. |.+...-..
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~---~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~------- 84 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQR---HLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ------- 84 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCC---EEEEEEecCCcCcEEEEEEcCCCCeEEEeecc-------
Confidence 466999998733 21 122335677889999999987 555554 357788877764 432211100
Q ss_pred cCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeC-CceEEEecCCCCCCCCCCCCCcceeeecCCCCC----------c
Q 000268 378 AGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTLARVWNACKPNTDDSDQPNHEIDVLSGHEND----------V 446 (1757)
Q Consensus 378 ~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~-DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~----------V 446 (1757)
.......+.++++++|++++++.. .|.|.++-+..... .........|.+. +
T Consensus 85 -----------~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~------l~~~v~~~~h~g~~p~~rQ~~~h~ 147 (346)
T COG2706 85 -----------TLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGS------LQPVVQVVKHTGSGPHERQESPHV 147 (346)
T ss_pred -----------ccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCc------cccceeeeecCCCCCCccccCCcc
Confidence 011222378999999998887754 68999998854211 1112122233333 6
Q ss_pred eEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEc-CCCeEEEEeCCCCCCCcccccccccccccCCCCCCCC
Q 000268 447 NYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCS-RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPP 525 (1757)
Q Consensus 447 ~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS-~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~ 525 (1757)
.+..+.|++ ++|++.. .--.|.+|++..++....
T Consensus 148 H~a~~tP~~--------------------------~~l~v~DLG~Dri~~y~~~dg~L~~~------------------- 182 (346)
T COG2706 148 HSANFTPDG--------------------------RYLVVPDLGTDRIFLYDLDDGKLTPA------------------- 182 (346)
T ss_pred ceeeeCCCC--------------------------CEEEEeecCCceEEEEEcccCccccc-------------------
Confidence 677777775 4555543 244688888885442110
Q ss_pred CCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEe-cCCeEEEEECCCC-ceEEEEeCC---------CCCeEEEEEecCC
Q 000268 526 QPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAADG-SLVHSLTGH---------TESTYVLDVHPFN 594 (1757)
Q Consensus 526 ~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs-~DG~I~IWDl~tg-kll~~L~gH---------~~~VtsLafSPdd 594 (1757)
.........+-+.|+|+|++++..+.+ -+++|.+|..... ..+..++.+ .....+|..+| +
T Consensus 183 -------~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~-d 254 (346)
T COG2706 183 -------DPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP-D 254 (346)
T ss_pred -------cccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC-C
Confidence 001113445678899999999987755 5889999998763 222222211 23456788899 6
Q ss_pred CcEEEEEe-CCCcEEEEeCCCC-ceEEEEe---ecCcceEEEEEcCCCCEEEEEeCC-CeEEEEEC--CCCcc
Q 000268 595 PRIAMSAG-YDGKTIVWDIWEG-IPIRIYE---ISRFRLVDGKFSPDGASIILSDDV-GQLYILNT--GQGES 659 (1757)
Q Consensus 595 ~~lLaSgs-~DG~IrIWDl~tg-~~l~~l~---~~~~~VtslafSPDGk~LAsgs~D-G~I~IWdl--~tGe~ 659 (1757)
+++|.++. ....|-++.+... ..+..+. .+.....+..|+++|++|+++..+ ..|.+|.. .+|+.
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L 327 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRL 327 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceE
Confidence 67776543 2336778877542 2233222 222235788999999999988554 36777765 44544
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.6e-06 Score=102.42 Aligned_cols=88 Identities=22% Similarity=0.256 Sum_probs=76.3
Q ss_pred ceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEE-eCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000268 533 RQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL-TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1757)
Q Consensus 533 ~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L-~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWD 611 (1757)
...+.+|-.-++.|+||||+++|+++..|..|+|-.....-.+..| -||..-|..++.-+ ++.|+|||.|++|++||
T Consensus 144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYLLLSGSGDKTLRLWD 221 (390)
T ss_pred cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--CceeeecCCCCcEEEEe
Confidence 3456788899999999999999999999999999888766666655 47999999999976 56689999999999999
Q ss_pred CCCCceEEEEe
Q 000268 612 IWEGIPIRIYE 622 (1757)
Q Consensus 612 l~tg~~l~~l~ 622 (1757)
+.+|+++.++.
T Consensus 222 ~~sgk~L~t~d 232 (390)
T KOG3914|consen 222 ITSGKLLDTCD 232 (390)
T ss_pred cccCCcccccc
Confidence 99999997775
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.2e-07 Score=112.70 Aligned_cols=166 Identities=14% Similarity=0.213 Sum_probs=124.8
Q ss_pred cccceeEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC--c
Q 000268 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND--C 307 (1757)
Q Consensus 230 ~~~~k~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~D--G 307 (1757)
...++..++|+.|+...+|++|+-+.+.|+.|+-.|.|+++++.+|.......+|...|+.+.-+-+|.++++.+.- -
T Consensus 1088 FSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1088 FSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred HhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCc
Confidence 34677888999999999999999999999999999999999999999999999999999999999999977765543 2
Q ss_pred eEEEEECCC-CCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCC
Q 000268 308 IIRVWRLPD-GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1757)
Q Consensus 308 tIrVWDl~t-g~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~ 386 (1757)
...+|++.. +.+.+++.+ -.++.|+.... .-+.|+......+||+.++..+.++.....
T Consensus 1168 lsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q---~r~~gt~~d~a~~YDvqT~~~l~tylt~~~------------- 1227 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRHSFDE----DKAVKFSNSLQ---FRALGTEADDALLYDVQTCSPLQTYLTDTV------------- 1227 (1516)
T ss_pred hHHHhccccccCccccccc----cceeehhhhHH---HHHhcccccceEEEecccCcHHHHhcCcch-------------
Confidence 578999853 455555543 45788887643 223344445689999999987766532111
Q ss_pred CCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCC
Q 000268 387 SAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACK 423 (1757)
Q Consensus 387 ~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t 423 (1757)
.....-.+..|+|+..+|+ .|| .+||++.
T Consensus 1228 ---~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~ 1256 (1516)
T KOG1832|consen 1228 ---TSSYSNNLAHFSPCDTLIL---NDG--VLWDVRI 1256 (1516)
T ss_pred ---hhhhhccccccCCCcceEe---eCc--eeeeecc
Confidence 1112226778999988776 355 3799875
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00013 Score=83.91 Aligned_cols=150 Identities=19% Similarity=0.227 Sum_probs=96.1
Q ss_pred EEECCCCCEEEEEcCCceEEEEecCCC--eEEEEEec---CCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEe
Q 000268 249 AIFDRSGRYVITGSDDRLVKIWSMETA--YCLASCRG---HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL 323 (1757)
Q Consensus 249 VaFSPDG~~LATGS~DGtIkIWDl~tg--~~l~tL~g---H~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l 323 (1757)
++.+.+|+.||.-- |..|.|=...+. ..+.+... ..-.=+-++||||+.+||.+...|+|+|+|+.. ..+..+
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVI 80 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEc
Confidence 56789999988864 567777766542 23333332 233457899999999999999999999999864 333333
Q ss_pred cC-------CCCceEEEEecCCCCc---eEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCc
Q 000268 324 RG-------HTAAVTAIAFSPRPGS---VYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 393 (1757)
Q Consensus 324 ~g-------H~~~VtsLafSPdg~~---~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~ 393 (1757)
.. -...|..|.|.+-..+ ...|++-...|.++-|-+..+....-. .............
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~------------e~hsfsf~~~yp~ 148 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQ------------ENHSFSFSSHYPH 148 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcce------------eeEEEEecccCCC
Confidence 22 2356777778764321 136777788888887776433211000 0000111123466
Q ss_pred ceEEEEECCCCCEEEEeeC
Q 000268 394 QIFCCAFNANGTVFVTGSS 412 (1757)
Q Consensus 394 ~V~slafSpdG~~LasGs~ 412 (1757)
.|.+++|+|..++|++|+.
T Consensus 149 Gi~~~vy~p~h~LLlVgG~ 167 (282)
T PF15492_consen 149 GINSAVYHPKHRLLLVGGC 167 (282)
T ss_pred ceeEEEEcCCCCEEEEecc
Confidence 7999999999888888764
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.7e-05 Score=92.65 Aligned_cols=297 Identities=13% Similarity=0.108 Sum_probs=194.1
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCC--C-CceEEecCCCCceEEEEecCCCCceEEEEEEeC-CCcEEEEe
Q 000268 283 GHEGDITDLAVSSNNALVASASNDCIIRVWRLPD--G-LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD-DGTCRIWD 358 (1757)
Q Consensus 283 gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~t--g-~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~-DGtIrIWD 358 (1757)
-|...|+.+..+ -.+++++++.||.++.|.-.. | ..+..+..|-+.|.+++.+-++. ++.|.+. |..++++|
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~---L~~Sv~d~Dhs~KvfD 82 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW---LFRSVEDPDHSVKVFD 82 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce---eEeeccCcccceeEEE
Confidence 377778777655 456999999999999997532 2 44566778999999999999986 7778677 99999999
Q ss_pred cCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCC--CEEEEe-eCCceEEEecCCCCCCCCCCCCCcc
Q 000268 359 ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG--TVFVTG-SSDTLARVWNACKPNTDDSDQPNHE 435 (1757)
Q Consensus 359 l~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG--~~LasG-s~DG~IrVWDl~t~~~~~s~~~~~~ 435 (1757)
+.+-....-+.+...+. ..++..++.. ..|+++ -.+|.|.|+|-.... ...
T Consensus 83 vEn~DminmiKL~~lPg-------------------~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~-------~q~ 136 (558)
T KOG0882|consen 83 VENFDMINMIKLVDLPG-------------------FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDF-------CQD 136 (558)
T ss_pred eeccchhhhcccccCCC-------------------ceEEecCCCCeeeeEEeecccCCCcEEECCcCCc-------Ccc
Confidence 98776654443322211 1112222221 133333 357889999975432 223
Q ss_pred eeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCC-CCCCcccccccccc
Q 000268 436 IDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRS-RRSHPKAARWTQAY 514 (1757)
Q Consensus 436 i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t-~k~~~~~~~w~~~~ 514 (1757)
...-.-|..+|..+.+++.+ +.+++....|.|..|.... -+.......|.
T Consensus 137 ~~fkklH~sPV~~i~y~qa~--------------------------Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~--- 187 (558)
T KOG0882|consen 137 GYFKKLHFSPVKKIRYNQAG--------------------------DSAVSIDISGMVEYWSAEGPFQFPRTNLNFE--- 187 (558)
T ss_pred ceecccccCceEEEEeeccc--------------------------cceeeccccceeEeecCCCcccCcccccccc---
Confidence 34456689999999999876 6888888899999998772 11000001111
Q ss_pred cccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeC--------------
Q 000268 515 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTG-------------- 580 (1757)
Q Consensus 515 ~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~g-------------- 580 (1757)
.....-+..+........++.|+|+|..+.+-+.|..|+++++.+|++++.+..
T Consensus 188 ------------~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~ 255 (558)
T KOG0882|consen 188 ------------LKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYG 255 (558)
T ss_pred ------------ccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccc
Confidence 011111222333455678999999999999999999999999999987665421
Q ss_pred ------------------CCC-CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecC----------------
Q 000268 581 ------------------HTE-STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISR---------------- 625 (1757)
Q Consensus 581 ------------------H~~-~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~---------------- 625 (1757)
|.. .-+.+.|.. .+.+|+-|+.=| |+|.++.++.+++.+-...
T Consensus 256 l~~VelgRRmaverelek~~~~~~~~~~fde-s~~flly~t~~g-ikvin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~ 333 (558)
T KOG0882|consen 256 LMHVELGRRMAVERELEKHGSTVGTNAVFDE-SGNFLLYGTILG-IKVINLDTNTVVRILGKDEAIRFTRLSLYQGAQKS 333 (558)
T ss_pred cceeehhhhhhHHhhHhhhcCcccceeEEcC-CCCEEEeeccee-EEEEEeecCeEEEEeccchhhhhhhHHHHhhhhhc
Confidence 111 123455655 556666665444 8999999998887763110
Q ss_pred -c-ce-------EEEEEcCCCCEEEEEeCCCeEEEE
Q 000268 626 -F-RL-------VDGKFSPDGASIILSDDVGQLYIL 652 (1757)
Q Consensus 626 -~-~V-------tslafSPDGk~LAsgs~DG~I~IW 652 (1757)
. .+ -.+.|-+|-..++++-....+++|
T Consensus 334 ~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 334 NLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred cchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 0 00 013466777788888888888888
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.8e-05 Score=84.98 Aligned_cols=244 Identities=13% Similarity=0.062 Sum_probs=156.3
Q ss_pred CCCEEEEEcCCceEEEEecCCCeE-EEEEecCCCCeEEEEEcCC-CCEEEEEeCCceEEEEECCCCCceEEecCCCCceE
Q 000268 254 SGRYVITGSDDRLVKIWSMETAYC-LASCRGHEGDITDLAVSSN-NALVASASNDCIIRVWRLPDGLPISVLRGHTAAVT 331 (1757)
Q Consensus 254 DG~~LATGS~DGtIkIWDl~tg~~-l~tL~gH~~~VtsLafSPD-g~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~Vt 331 (1757)
..-+||.|+.-|...+|...+.+. ++.+..|...|+-+.=..+ ...+..++.|.++++.++.-+.....+.-..-.+.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 345899999999999999986544 3344445554443322222 22466677888899888865543322221113388
Q ss_pred EEEecCCCCceEEEEEEeCCCcEEEEecCCCCc-cceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEe
Q 000268 332 AIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQF-SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG 410 (1757)
Q Consensus 332 sLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~-~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasG 410 (1757)
++++++++. ++++.+....|.+|.+..... +..+. ..+....-.+..|+.....+|++
T Consensus 163 s~~~snd~~---~~~~Vgds~~Vf~y~id~~sey~~~~~------------------~a~t~D~gF~~S~s~~~~~FAv~ 221 (344)
T KOG4532|consen 163 SLHYSNDPS---WGSSVGDSRRVFRYAIDDESEYIENIY------------------EAPTSDHGFYNSFSENDLQFAVV 221 (344)
T ss_pred eeEEcCCCc---eEEEecCCCcceEEEeCCccceeeeeE------------------ecccCCCceeeeeccCcceEEEE
Confidence 999999997 899999999999998875432 11111 11233345688999999999999
Q ss_pred eCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCC
Q 000268 411 SSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRD 490 (1757)
Q Consensus 411 s~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~D 490 (1757)
..||++.|||++...... .........|.+.+..+.|++.|. -++|+..-.-
T Consensus 222 ~Qdg~~~I~DVR~~~tpm----~~~sstrp~hnGa~R~c~Fsl~g~------------------------lDLLf~sEhf 273 (344)
T KOG4532|consen 222 FQDGTCAIYDVRNMATPM----AEISSTRPHHNGAFRVCRFSLYGL------------------------LDLLFISEHF 273 (344)
T ss_pred ecCCcEEEEEecccccch----hhhcccCCCCCCceEEEEecCCCc------------------------ceEEEEecCc
Confidence 999999999998643321 112233456899999999998652 2567776677
Q ss_pred CeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCC-CCeeEEEEcCCCCEEEEEecCCeEEEEEC
Q 000268 491 GSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP-RGVNMIVWSLDNRFVLAAIMDCRICVWNA 569 (1757)
Q Consensus 491 GtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~-~~VtsVafSPDG~~LaSGs~DG~I~IWDl 569 (1757)
+.+.+.|+++.+.+...... + .....|. ..|...+|+.++.-+.+...+ .+.=|++
T Consensus 274 s~~hv~D~R~~~~~q~I~i~---------------------~-d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni 330 (344)
T KOG4532|consen 274 SRVHVVDTRNYVNHQVIVIP---------------------D-DVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNI 330 (344)
T ss_pred ceEEEEEcccCceeeEEecC---------------------c-cccccccccccccccccCCCcccccccch-hhheeec
Confidence 88999999975532211100 0 0111222 337777788877776666554 3444554
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.4e-05 Score=94.53 Aligned_cols=160 Identities=18% Similarity=0.117 Sum_probs=105.5
Q ss_pred eEEEEEcCCCCEEEEEeCCceEEEEECCCCCc----eEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCC
Q 000268 288 ITDLAVSSNNALVASASNDCIIRVWRLPDGLP----ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ 363 (1757)
Q Consensus 288 VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~----l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~ 363 (1757)
+..+..++.+++||++..+....++++..... +... .-...-+++.|..+.........++....+.+|.+..+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 34445667777888877777766666543322 2111 122333445555554422233344555666666665443
Q ss_pred ccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCC
Q 000268 364 FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE 443 (1757)
Q Consensus 364 ~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~ 443 (1757)
+... -+|-..++.++|+||+++|+++..|..|+|-..... ...-....||.
T Consensus 144 ~~~~---------------------lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~--------f~IesfclGH~ 194 (390)
T KOG3914|consen 144 CEPI---------------------LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT--------FVIESFCLGHK 194 (390)
T ss_pred cchh---------------------hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc--------cchhhhccccH
Confidence 3222 357788999999999999999999999999776321 11223346799
Q ss_pred CCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCC
Q 000268 444 NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSH 504 (1757)
Q Consensus 444 ~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~ 504 (1757)
..|..++..++ ..|+++|.|++|++||+.+++..
T Consensus 195 eFVS~isl~~~---------------------------~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 195 EFVSTISLTDN---------------------------YLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred hheeeeeeccC---------------------------ceeeecCCCCcEEEEecccCCcc
Confidence 99999998875 36899999999999999987744
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0004 Score=82.03 Aligned_cols=99 Identities=13% Similarity=0.101 Sum_probs=75.0
Q ss_pred EEEEECC-CCCEEEEEcCCc-eEEEEecCCCeEEEEEecCCCCe--EEEEEcCCCCEEEEEeC-----CceEEEEECC-C
Q 000268 247 YCAIFDR-SGRYVITGSDDR-LVKIWSMETAYCLASCRGHEGDI--TDLAVSSNNALVASASN-----DCIIRVWRLP-D 316 (1757)
Q Consensus 247 ~~VaFSP-DG~~LATGS~DG-tIkIWDl~tg~~l~tL~gH~~~V--tsLafSPDg~lLASgS~-----DGtIrVWDl~-t 316 (1757)
..++.+| .+..+|.+-.-| ...+||..+|+.++.+....+.- -.-+||+||++|++.-. .|.|-|||.. +
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 4577888 566777777665 57889999999988776433322 14579999999998643 5899999998 5
Q ss_pred CCceEEecCCCCceEEEEecCCCCceEEEEEE
Q 000268 317 GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSS 348 (1757)
Q Consensus 317 g~~l~~l~gH~~~VtsLafSPdg~~~~~LaSg 348 (1757)
-+.+..+..|.-.-..|.+.||+. .|+++
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~---tLvVA 116 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGE---TLVVA 116 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCC---EEEEE
Confidence 577888888887788899999986 45544
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.24 E-value=4e-06 Score=103.75 Aligned_cols=226 Identities=20% Similarity=0.298 Sum_probs=149.9
Q ss_pred EEEccCCCCEEEEEECCCC-CEEEEEcCCceEEEEecCCC-eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEEC
Q 000268 237 KRVRGHRNAVYCAIFDRSG-RYVITGSDDRLVKIWSMETA-YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 314 (1757)
Q Consensus 237 ~tL~GH~~~V~~VaFSPDG-~~LATGS~DGtIkIWDl~tg-~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl 314 (1757)
-.|.||..+|+.+-|.|.. ..||+++.|..|..||+.+- ..+..+..-......++|+.....+.+.+....|+|||+
T Consensus 108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~ 187 (1081)
T KOG0309|consen 108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDL 187 (1081)
T ss_pred EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEec
Confidence 4678999999999999965 57899999999999999764 344454444556778899975555555567778999999
Q ss_pred CCC-CceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCc
Q 000268 315 PDG-LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 393 (1757)
Q Consensus 315 ~tg-~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~ 393 (1757)
..| .++..+++|...|+.+.|..--. ..+.+.+.||+|++||...........+ ....
T Consensus 188 r~gs~pl~s~K~~vs~vn~~~fnr~~~--s~~~s~~~d~tvkfw~y~kSt~e~~~~v-------------------tt~~ 246 (1081)
T KOG0309|consen 188 RKGSTPLCSLKGHVSSVNSIDFNRFKY--SEIMSSSNDGTVKFWDYSKSTTESKRTV-------------------TTNF 246 (1081)
T ss_pred cCCCcceEEecccceeeehHHHhhhhh--hhhcccCCCCceeeecccccccccceec-------------------cccC
Confidence 866 67889999999999999976532 2688999999999999876543322221 1223
Q ss_pred ceEEEEECCCCC--EEEEeeCCceEEEecCCCCCCC-CCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCC
Q 000268 394 QIFCCAFNANGT--VFVTGSSDTLARVWNACKPNTD-DSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDS 470 (1757)
Q Consensus 394 ~V~slafSpdG~--~LasGs~DG~IrVWDl~t~~~~-~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~ 470 (1757)
.|+--.|.|-|. ++.---.+..+.+++.+..... ........+..+.||.+.|....|-..+.-
T Consensus 247 piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~------------- 313 (1081)
T KOG0309|consen 247 PIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKEC------------- 313 (1081)
T ss_pred cceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccc-------------
Confidence 344445555332 2111111123333333221100 011235578899999999988887643210
Q ss_pred CCccccccc-CCCcEEEEcCCCeEEEEeCCC
Q 000268 471 TPKFKNSWF-CHDNIVTCSRDGSAIIWIPRS 500 (1757)
Q Consensus 471 ~~~~~~~~~-~~~~LvSgS~DGtI~IWDl~t 500 (1757)
...+. .+-.|||-+.|.++++|-+.+
T Consensus 314 ----~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 314 ----DGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ----cCCCCccceeEEEeecCCceEeeeccH
Confidence 00000 012699999999999998875
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00014 Score=82.06 Aligned_cols=263 Identities=11% Similarity=0.004 Sum_probs=156.6
Q ss_pred CceEEEEecCCCe--EEEEEecCCCCeEEEEEcC-----CCCEEEEEeCCceEEEEECCCCCc-eEEecCCCCceEEEEe
Q 000268 264 DRLVKIWSMETAY--CLASCRGHEGDITDLAVSS-----NNALVASASNDCIIRVWRLPDGLP-ISVLRGHTAAVTAIAF 335 (1757)
Q Consensus 264 DGtIkIWDl~tg~--~l~tL~gH~~~VtsLafSP-----Dg~lLASgS~DGtIrVWDl~tg~~-l~~l~gH~~~VtsLaf 335 (1757)
...|-+|++-+.. .+... +.|.|.| ...+||.|+.-|...+|...+... +.....|...|+-+.=
T Consensus 51 t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r 123 (344)
T KOG4532|consen 51 TISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKR 123 (344)
T ss_pred eeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhh
Confidence 3456777765443 22222 2344444 345899999999999999986543 3333444444433322
Q ss_pred cCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCce
Q 000268 336 SPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTL 415 (1757)
Q Consensus 336 SPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~ 415 (1757)
.-+.. .-+..++.|.++++.++..+........ ..-.+.+++++++++++++.+....
T Consensus 124 ~cd~~--~~~~i~sndht~k~~~~~~~s~~~~~h~--------------------~~~~~ns~~~snd~~~~~~Vgds~~ 181 (344)
T KOG4532|consen 124 YCDLK--FPLNIASNDHTGKTMVVSGDSNKFAVHN--------------------QNLTQNSLHYSNDPSWGSSVGDSRR 181 (344)
T ss_pred hcccc--cceeeccCCcceeEEEEecCcccceeec--------------------cccceeeeEEcCCCceEEEecCCCc
Confidence 22222 2467788899999998876543333211 1122789999999999999999999
Q ss_pred EEEecCCCCCCCCCCCCCccee-eecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEE
Q 000268 416 ARVWNACKPNTDDSDQPNHEID-VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAI 494 (1757)
Q Consensus 416 IrVWDl~t~~~~~s~~~~~~i~-~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~ 494 (1757)
|..|.+.... ...+. .....++.-.+..|+.. ...+|++..||++.
T Consensus 182 Vf~y~id~~s-------ey~~~~~~a~t~D~gF~~S~s~~--------------------------~~~FAv~~Qdg~~~ 228 (344)
T KOG4532|consen 182 VFRYAIDDES-------EYIENIYEAPTSDHGFYNSFSEN--------------------------DLQFAVVFQDGTCA 228 (344)
T ss_pred ceEEEeCCcc-------ceeeeeEecccCCCceeeeeccC--------------------------cceEEEEecCCcEE
Confidence 9999885421 11111 22223333345555543 25899999999999
Q ss_pred EEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCC--EEEEEecCCeEEEEECCCC
Q 000268 495 IWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR--FVLAAIMDCRICVWNAADG 572 (1757)
Q Consensus 495 IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~--~LaSGs~DG~I~IWDl~tg 572 (1757)
|||++.... ++ ......-..|.+.++.+.|++-|. +|+..-.-+.+.|.|++++
T Consensus 229 I~DVR~~~t------------------pm------~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 229 IYDVRNMAT------------------PM------AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY 284 (344)
T ss_pred EEEeccccc------------------ch------hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence 999995221 00 001111233778899999998664 3444445578999999998
Q ss_pred ceEEEEeC-------CC-CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 000268 573 SLVHSLTG-------HT-ESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614 (1757)
Q Consensus 573 kll~~L~g-------H~-~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~t 614 (1757)
.-.+.+.- |. ..|+.-.|+..+....+ .+. -.+.-|++.+
T Consensus 285 ~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v-~~e-~~~ae~ni~s 332 (344)
T KOG4532|consen 285 VNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDV-KNE-LQGAEYNILS 332 (344)
T ss_pred ceeeEEecCccccccccccccccccccCCCccccc-ccc-hhhheeeccc
Confidence 76654432 22 23666667664443332 222 2344555533
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.2e-05 Score=93.37 Aligned_cols=320 Identities=16% Similarity=0.148 Sum_probs=195.7
Q ss_pred CCCCEEEEEECCCCCEEEEEcCCceEEEEecCC--C-eEEEEEecCCCCeEEEEEcCCCCEEEEEeC-CceEEEEECCCC
Q 000268 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET--A-YCLASCRGHEGDITDLAVSSNNALVASASN-DCIIRVWRLPDG 317 (1757)
Q Consensus 242 H~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~t--g-~~l~tL~gH~~~VtsLafSPDg~lLASgS~-DGtIrVWDl~tg 317 (1757)
|...|+-|.-+ -.+++.+++.||.++.|--.. | +.+..++.|-+.|.+++.+.++.++.|++. |..++++|+++-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 67777776544 456999999999999997532 2 344556789999999999999999999887 999999999876
Q ss_pred CceEEec--CCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcce
Q 000268 318 LPISVLR--GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 395 (1757)
Q Consensus 318 ~~l~~l~--gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V 395 (1757)
..+..++ .-.+.+..+ .++...-...-++.-.+|.|.|+|-....+...+ ...-|..+|
T Consensus 87 DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~------------------fkklH~sPV 147 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGY------------------FKKLHFSPV 147 (558)
T ss_pred chhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccce------------------ecccccCce
Confidence 5543332 122222222 2222111112333445788999987655432222 234578889
Q ss_pred EEEEECCCCCEEEEeeCCceEEEecCCCC------CCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCC
Q 000268 396 FCCAFNANGTVFVTGSSDTLARVWNACKP------NTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 469 (1757)
Q Consensus 396 ~slafSpdG~~LasGs~DG~IrVWDl~t~------~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~ 469 (1757)
.++.+++.+..+++....|.|.-|..... +..........+..+........++.|+|++
T Consensus 148 ~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g-------------- 213 (558)
T KOG0882|consen 148 KKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG-------------- 213 (558)
T ss_pred EEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc--------------
Confidence 99999999999999999999999998520 0000111111122223334556788888876
Q ss_pred CCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCC-CCC---CCceeecCCC-CCee
Q 000268 470 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQP-PRG---GPRQRILPTP-RGVN 544 (1757)
Q Consensus 470 ~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~-~~~---~~~~~l~~h~-~~Vt 544 (1757)
..+.+-+.|..|+++++.+++.......-....+..... +..... ..+ ...+.+..|. ..-+
T Consensus 214 ------------~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks-~y~l~~VelgRRmaverelek~~~~~~~ 280 (558)
T KOG0882|consen 214 ------------AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKS-PYGLMHVELGRRMAVERELEKHGSTVGT 280 (558)
T ss_pred ------------CcccccCcccEEEEEEeccchhhhhhhccchhhhhcccc-ccccceeehhhhhhHHhhHhhhcCcccc
Confidence 577788899999999999877543322111111100000 000000 000 0001111122 2345
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCC------------------CCe-------EEEEEecCCCcEEE
Q 000268 545 MIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHT------------------EST-------YVLDVHPFNPRIAM 599 (1757)
Q Consensus 545 sVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~------------------~~V-------tsLafSPdd~~lLa 599 (1757)
.++|...|.+|+-|+.=| |+|.++.++.+++.+-... ..+ ..+.+-+ ++.+++
T Consensus 281 ~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~-dpt~~c 358 (558)
T KOG0882|consen 281 NAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQK-DPTIVC 358 (558)
T ss_pred eeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcccccCC-CCeEEE
Confidence 678999999999998764 8999999988877652111 000 1123444 667777
Q ss_pred EEeCCCcEEEE
Q 000268 600 SAGYDGKTIVW 610 (1757)
Q Consensus 600 Sgs~DG~IrIW 610 (1757)
++-....++++
T Consensus 359 ~a~kk~rfylf 369 (558)
T KOG0882|consen 359 TAFKKNRFYLF 369 (558)
T ss_pred eeeecceEEEE
Confidence 77777777777
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00076 Score=78.68 Aligned_cols=230 Identities=14% Similarity=0.078 Sum_probs=145.3
Q ss_pred EEEEcC-CCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEec-CCCCceEEEEEEeCCCcEEEEecCCCCccce
Q 000268 290 DLAVSS-NNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFS-PRPGSVYQLLSSSDDGTCRIWDARYSQFSPR 367 (1757)
Q Consensus 290 sLafSP-Dg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafS-Pdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~ 367 (1757)
+++|.+ ++.++++-...+.|..|+..++.... +.... ...+++. +++ .|+.+...+ +.++|+.+++....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g----~l~v~~~~~-~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG----RLYVADSGG-IAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS----EEEEEETTC-EEEEETTTTEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC----EEEEEEcCc-eEEEecCCCcEEEE
Confidence 578887 67677777778999999998875533 22222 6777887 664 566666655 56669888865443
Q ss_pred eecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCC--------ceEEEecCCCCCCCCCCCCCcceeee
Q 000268 368 IYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD--------TLARVWNACKPNTDDSDQPNHEIDVL 439 (1757)
Q Consensus 368 i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~D--------G~IrVWDl~t~~~~~s~~~~~~i~~l 439 (1757)
..... .......+..+++.++|++.++.... |.|..++.. ..+..+
T Consensus 76 ~~~~~---------------~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-----------~~~~~~ 129 (246)
T PF08450_consen 76 ADLPD---------------GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-----------GKVTVV 129 (246)
T ss_dssp EEEET---------------TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-----------SEEEEE
T ss_pred eeccC---------------CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-----------CeEEEE
Confidence 32210 01134568899999999977765543 456666653 123333
Q ss_pred cCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCC
Q 000268 440 SGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVP 519 (1757)
Q Consensus 440 ~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~ 519 (1757)
...-...+.|+|+|++ ..++++-+..+.|..+++.......... .
T Consensus 130 ~~~~~~pNGi~~s~dg-------------------------~~lyv~ds~~~~i~~~~~~~~~~~~~~~---~------- 174 (246)
T PF08450_consen 130 ADGLGFPNGIAFSPDG-------------------------KTLYVADSFNGRIWRFDLDADGGELSNR---R------- 174 (246)
T ss_dssp EEEESSEEEEEEETTS-------------------------SEEEEEETTTTEEEEEEEETTTCCEEEE---E-------
T ss_pred ecCcccccceEECCcc-------------------------hheeecccccceeEEEeccccccceeee---e-------
Confidence 3334556889999986 1245577888888888886422100000 0
Q ss_pred CCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEe-cCCCcEE
Q 000268 520 PPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVH-PFNPRIA 598 (1757)
Q Consensus 520 ~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafS-Pdd~~lL 598 (1757)
....+.......-.+++..+|++.++....+.|.+++.. |+++..+......+++++|. ++...++
T Consensus 175 ------------~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~ 241 (246)
T PF08450_consen 175 ------------VFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLY 241 (246)
T ss_dssp ------------EEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEE
T ss_pred ------------eEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEE
Confidence 000111111346789999999998888889999999987 99998887666689999994 5445566
Q ss_pred EEE
Q 000268 599 MSA 601 (1757)
Q Consensus 599 aSg 601 (1757)
+|.
T Consensus 242 vTt 244 (246)
T PF08450_consen 242 VTT 244 (246)
T ss_dssp EEE
T ss_pred EEe
Confidence 654
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00032 Score=80.74 Aligned_cols=140 Identities=15% Similarity=0.100 Sum_probs=89.9
Q ss_pred CCceEEEEecCCCeEEEEEecC--CCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCC
Q 000268 263 DDRLVKIWSMETAYCLASCRGH--EGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPG 340 (1757)
Q Consensus 263 ~DGtIkIWDl~tg~~l~tL~gH--~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~ 340 (1757)
++|+|..||..+|+.+....-- .....+. ..+++..|++++.++.|..||..+|+.+..+.. ...+.......++
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~- 77 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVDGG- 77 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEETT-
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeeccc-
Confidence 4789999999999999887631 1222222 233566777888999999999999998877764 2222111122232
Q ss_pred ceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEec
Q 000268 341 SVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420 (1757)
Q Consensus 341 ~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWD 420 (1757)
.+++++.++.|..+|+.+|+.+......... ... ....+.....+..++++..++.|..+|
T Consensus 78 ---~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~---------------~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d 138 (238)
T PF13360_consen 78 ---RVYVGTSDGSLYALDAKTGKVLWSIYLTSSP---------------PAG-VRSSSSPAVDGDRLYVGTSSGKLVALD 138 (238)
T ss_dssp ---EEEEEETTSEEEEEETTTSCEEEEEEE-SSC---------------TCS-TB--SEEEEETTEEEEEETCSEEEEEE
T ss_pred ---ccccccceeeeEecccCCcceeeeecccccc---------------ccc-cccccCceEecCEEEEEeccCcEEEEe
Confidence 5777778889999999999987764211100 000 111122222377888888899999999
Q ss_pred CCCC
Q 000268 421 ACKP 424 (1757)
Q Consensus 421 l~t~ 424 (1757)
+.++
T Consensus 139 ~~tG 142 (238)
T PF13360_consen 139 PKTG 142 (238)
T ss_dssp TTTT
T ss_pred cCCC
Confidence 8653
|
... |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00034 Score=88.10 Aligned_cols=227 Identities=6% Similarity=-0.009 Sum_probs=125.0
Q ss_pred ceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeC---CCcEEEEecCCCCccceeecCCCCccccCCCCC
Q 000268 307 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD---DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMA 383 (1757)
Q Consensus 307 GtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~---DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~ 383 (1757)
..|.+-|.. |...+.+... +.+....|+|+++. .++..+. ...|.++|+.+++......
T Consensus 169 ~~l~~~d~d-g~~~~~~~~~-~~~~~p~wSpDG~~--~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-------------- 230 (419)
T PRK04043 169 SNIVLADYT-LTYQKVIVKG-GLNIFPKWANKEQT--AFYYTSYGERKPTLYKYNLYTGKKEKIAS-------------- 230 (419)
T ss_pred ceEEEECCC-CCceeEEccC-CCeEeEEECCCCCc--EEEEEEccCCCCEEEEEECCCCcEEEEec--------------
Confidence 355565654 3333434333 37888999999872 1333222 4568889998776332211
Q ss_pred CCCCCCCCCcceEEEEECCCCCEEEEeeC---CceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccc
Q 000268 384 PSSSAGPQSHQIFCCAFNANGTVFVTGSS---DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 460 (1757)
Q Consensus 384 ~~~~~~~~~~~V~slafSpdG~~LasGs~---DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~ 460 (1757)
..+......|+|||+.|+.... +..|.++++.++. ...+..+........|+|+|
T Consensus 231 -------~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~----------~~~LT~~~~~d~~p~~SPDG----- 288 (419)
T PRK04043 231 -------SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT----------LTQITNYPGIDVNGNFVEDD----- 288 (419)
T ss_pred -------CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc----------EEEcccCCCccCccEECCCC-----
Confidence 1233556789999987765432 3467777875431 23333333333456799987
Q ss_pred ccccCCCCCCCCcccccccCCCcEEEEcCCC--eEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecC
Q 000268 461 SLADSSKEDSTPKFKNSWFCHDNIVTCSRDG--SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP 538 (1757)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DG--tI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 538 (1757)
...+++....| .|.++|+.++. ..++..
T Consensus 289 --------------------~~I~F~Sdr~g~~~Iy~~dl~~g~------------------------------~~rlt~ 318 (419)
T PRK04043 289 --------------------KRIVFVSDRLGYPNIFMKKLNSGS------------------------------VEQVVF 318 (419)
T ss_pred --------------------CEEEEEECCCCCceEEEEECCCCC------------------------------eEeCcc
Confidence 12333443444 45555555422 111111
Q ss_pred CCCCeeEEEEcCCCCEEEEEecC---------CeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCc--E
Q 000268 539 TPRGVNMIVWSLDNRFVLAAIMD---------CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGK--T 607 (1757)
Q Consensus 539 h~~~VtsVafSPDG~~LaSGs~D---------G~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~--I 607 (1757)
... ....|||||++|+..+.. ..|.+.|+.++.. +.+... .......|+|++..++++....+. |
T Consensus 319 ~g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L 394 (419)
T PRK04043 319 HGK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSAL 394 (419)
T ss_pred CCC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEE
Confidence 111 124899999999876643 3688999988765 444433 223368899965555555443333 5
Q ss_pred EEEeCCCCceEEEEeecCcce
Q 000268 608 IVWDIWEGIPIRIYEISRFRL 628 (1757)
Q Consensus 608 rIWDl~tg~~l~~l~~~~~~V 628 (1757)
.+.++ +|.....+....+.+
T Consensus 395 ~~~~l-~g~~~~~l~~~~g~~ 414 (419)
T PRK04043 395 GIIRL-NYNKSFLFPLKVGKI 414 (419)
T ss_pred EEEec-CCCeeEEeecCCCcc
Confidence 56666 444344443333333
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.3e-05 Score=91.05 Aligned_cols=236 Identities=18% Similarity=0.243 Sum_probs=147.1
Q ss_pred CCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCC------------CceEEEEccCcccc
Q 000268 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEN------------DVNYVQFSGCAVAS 458 (1757)
Q Consensus 391 ~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~------------~V~sLafSpdg~~s 458 (1757)
....|+++.|...|.+|++|...|.|.+|.-.... .-..+.+..+++|.. .|..|.|..++
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~----~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t--- 97 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSY----GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDT--- 97 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeeccccc----ccchhhhhhhcccccchhhhhhccHHHHhhheeeecCC---
Confidence 34568999999999999999999999999764321 011223344555543 34555555432
Q ss_pred ccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCccc-ccccccccccCCCCCCCCCC----------
Q 000268 459 RFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKA-ARWTQAYHLKVPPPPMPPQP---------- 527 (1757)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~-~~w~~~~~l~~~~~~~~~~~---------- 527 (1757)
....++..+.|.+|++|.+......... ......++..+..+......
T Consensus 98 ---------------------~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd 156 (460)
T COG5170 98 ---------------------GRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHD 156 (460)
T ss_pred ---------------------CcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccc
Confidence 1246788889999999998754211000 01111111111110000000
Q ss_pred --CCCCCceee-cCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCce---EEEEeCCC-----CCeEEEEEecCCCc
Q 000268 528 --PRGGPRQRI-LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSL---VHSLTGHT-----ESTYVLDVHPFNPR 596 (1757)
Q Consensus 528 --~~~~~~~~l-~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkl---l~~L~gH~-----~~VtsLafSPdd~~ 596 (1757)
....+.+.. ..|...|+++.|..|..+++++ .|-+|.+|++.-... +--++.|. ..|++..|||....
T Consensus 157 ~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn 235 (460)
T COG5170 157 EIIAAKPCRVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCN 235 (460)
T ss_pred eEEEeccceeccccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcc
Confidence 001122212 4577779999999999988877 467899999864321 22334443 35888999997777
Q ss_pred EEEEEeCCCcEEEEeCCCCceE----EEE------------eecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 000268 597 IAMSAGYDGKTIVWDIWEGIPI----RIY------------EISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 656 (1757)
Q Consensus 597 lLaSgs~DG~IrIWDl~tg~~l----~~l------------~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~t 656 (1757)
++.-.+..|.|++-|++...+. ..+ ..-...|.++.|+++|++|++-+. -+|.|||+.-
T Consensus 236 ~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm 310 (460)
T COG5170 236 VFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNM 310 (460)
T ss_pred eEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccc
Confidence 7777788999999999743211 111 111236778999999999998765 7899999864
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00039 Score=87.00 Aligned_cols=267 Identities=14% Similarity=0.093 Sum_probs=155.6
Q ss_pred CCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEE-EEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEE-
Q 000268 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITD-LAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTA- 332 (1757)
Q Consensus 255 G~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~Vts-LafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~Vts- 332 (1757)
+..|+.++.+|.|.-+|..+|+.+.+..... .+.+ ..+ .+..|+.++.++.|..+|..+|+.+..+......+..
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR 196 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence 4567778889999999999999888766432 2222 122 2346667788999999999999988777532111100
Q ss_pred EEecC--CCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECC--CCCEEE
Q 000268 333 IAFSP--RPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA--NGTVFV 408 (1757)
Q Consensus 333 LafSP--dg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSp--dG~~La 408 (1757)
..-+| .+. .++.++.+|.+..+|..+|+.+.......+.... .......+..+| .+..++
T Consensus 197 ~~~sP~v~~~---~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~-------------~~~~~~~~~~sP~v~~~~vy 260 (394)
T PRK11138 197 GESAPATAFG---GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGAT-------------EIDRLVDVDTTPVVVGGVVY 260 (394)
T ss_pred CCCCCEEECC---EEEEEcCCCEEEEEEccCChhhheeccccCCCcc-------------chhcccccCCCcEEECCEEE
Confidence 00111 112 5677788999999999999876554321111000 000000011112 244566
Q ss_pred EeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEc
Q 000268 409 TGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCS 488 (1757)
Q Consensus 409 sGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS 488 (1757)
+++.+|.+..+|+.+++. +.... ......+.. .++.++.++
T Consensus 261 ~~~~~g~l~ald~~tG~~---------~W~~~--~~~~~~~~~----------------------------~~~~vy~~~ 301 (394)
T PRK11138 261 ALAYNGNLVALDLRSGQI---------VWKRE--YGSVNDFAV----------------------------DGGRIYLVD 301 (394)
T ss_pred EEEcCCeEEEEECCCCCE---------EEeec--CCCccCcEE----------------------------ECCEEEEEc
Confidence 677789999999876432 11110 000001111 135788888
Q ss_pred CCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEE
Q 000268 489 RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWN 568 (1757)
Q Consensus 489 ~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWD 568 (1757)
.+|.+..+|..+++ ..|..... . .....+.++ .+.+|+.++.+|.|+++|
T Consensus 302 ~~g~l~ald~~tG~-----~~W~~~~~----------------------~-~~~~~sp~v--~~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 302 QNDRVYALDTRGGV-----ELWSQSDL----------------------L-HRLLTAPVL--YNGYLVVGDSEGYLHWIN 351 (394)
T ss_pred CCCeEEEEECCCCc-----EEEccccc----------------------C-CCcccCCEE--ECCEEEEEeCCCEEEEEE
Confidence 99999999998754 23321100 0 000111111 256778889999999999
Q ss_pred CCCCceEEEEeCCCCCeEE-EEEecCCCcEEEEEeCCCcEEEEeC
Q 000268 569 AADGSLVHSLTGHTESTYV-LDVHPFNPRIAMSAGYDGKTIVWDI 612 (1757)
Q Consensus 569 l~tgkll~~L~gH~~~Vts-LafSPdd~~lLaSgs~DG~IrIWDl 612 (1757)
..+|+.+....-....+.+ ..+ . +++ |+.++.||.|..+++
T Consensus 352 ~~tG~~~~~~~~~~~~~~s~P~~-~-~~~-l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 352 REDGRFVAQQKVDSSGFLSEPVV-A-DDK-LLIQARDGTVYAITR 393 (394)
T ss_pred CCCCCEEEEEEcCCCcceeCCEE-E-CCE-EEEEeCCceEEEEeC
Confidence 9999998887644333332 222 2 444 456788999888764
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00034 Score=80.56 Aligned_cols=222 Identities=14% Similarity=0.099 Sum_probs=133.9
Q ss_pred CCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCC
Q 000268 351 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD 430 (1757)
Q Consensus 351 DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~ 430 (1757)
+|+|..||..+|+.+....+... .....+.. .+++..+++++.++.|..||..+++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~------------------~~~~~~~~-~~~~~~v~~~~~~~~l~~~d~~tG~----- 57 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPG------------------IGGPVATA-VPDGGRVYVASGDGNLYALDAKTGK----- 57 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSS------------------CSSEEETE-EEETTEEEEEETTSEEEEEETTTSE-----
T ss_pred CCEEEEEECCCCCEEEEEECCCC------------------CCCccceE-EEeCCEEEEEcCCCEEEEEECCCCC-----
Confidence 68899999999988777643110 11122212 2355667777889999999997642
Q ss_pred CCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccc
Q 000268 431 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510 (1757)
Q Consensus 431 ~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w 510 (1757)
.+..... ...+..... ..++.+++++.++.|..+|..+++. .|
T Consensus 58 ----~~W~~~~-~~~~~~~~~---------------------------~~~~~v~v~~~~~~l~~~d~~tG~~-----~W 100 (238)
T PF13360_consen 58 ----VLWRFDL-PGPISGAPV---------------------------VDGGRVYVGTSDGSLYALDAKTGKV-----LW 100 (238)
T ss_dssp ----EEEEEEC-SSCGGSGEE---------------------------EETTEEEEEETTSEEEEEETTTSCE-----EE
T ss_pred ----EEEEeec-cccccceee---------------------------ecccccccccceeeeEecccCCcce-----ee
Confidence 3322222 111111111 1135777777888999999887662 23
Q ss_pred cc-cccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCC-----
Q 000268 511 TQ-AYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTES----- 584 (1757)
Q Consensus 511 ~~-~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~----- 584 (1757)
.. .... .............++..++++..++.|..+|+.+|+.+.....+...
T Consensus 101 ~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~ 159 (238)
T PF13360_consen 101 SIYLTSS---------------------PPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPI 159 (238)
T ss_dssp EEEE-SS---------------------CTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--E
T ss_pred eeccccc---------------------cccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcce
Confidence 21 1000 00001111222233888888988999999999999999888764422
Q ss_pred -----eEEEEEecCCCcEEEEEeCCCc-EEEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 000268 585 -----TYVLDVHPFNPRIAMSAGYDGK-TIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 658 (1757)
Q Consensus 585 -----VtsLafSPdd~~lLaSgs~DG~-IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~tGe 658 (1757)
+..-.... ++ .++.++.++. +.+ |+.+|+.+.... ...+.. ....++..|++++.++.|++||+.+|+
T Consensus 160 ~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 160 SSFSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp EEETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred eeecccccceEEE-CC-EEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 11222222 34 4555666775 555 999999775333 222222 256788888888899999999999997
Q ss_pred cc
Q 000268 659 SQ 660 (1757)
Q Consensus 659 ~~ 660 (1757)
..
T Consensus 234 ~~ 235 (238)
T PF13360_consen 234 VV 235 (238)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
... |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00063 Score=78.32 Aligned_cols=213 Identities=13% Similarity=0.120 Sum_probs=110.9
Q ss_pred ceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCc
Q 000268 394 QIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1757)
Q Consensus 394 ~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~ 473 (1757)
+-.-++||||+.+||.+...|+|++||+...... ...+.. .....-...|..+.|....
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~--~~~~d~~~Aiagl~Fl~~~------------------ 103 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAM--SFPGDLSDAIAGLIFLEYK------------------ 103 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCccc--ccCCccccceeeeEeeccc------------------
Confidence 3567999999999999999999999999532111 111100 0001112344555554321
Q ss_pred ccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceee-cCCCCCeeEEEEcCCC
Q 000268 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI-LPTPRGVNMIVWSLDN 552 (1757)
Q Consensus 474 ~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l-~~h~~~VtsVafSPDG 552 (1757)
....| ...|++-..+|.++-|-+..+... .+... ....+ .....+|++++++|..
T Consensus 104 ~s~~w--s~ELlvi~Y~G~L~Sy~vs~gt~q----~y~e~------------------hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 104 KSAQW--SYELLVINYRGQLRSYLVSVGTNQ----GYQEN------------------HSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred ccccc--ceeEEEEeccceeeeEEEEcccCC----cceee------------------EEEEecccCCCceeEEEEcCCC
Confidence 01111 125666677777777665321100 00000 01111 1245689999999999
Q ss_pred CEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEE-EEEeCCC------cEEEEeCCCCceEEEEeecC
Q 000268 553 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIA-MSAGYDG------KTIVWDIWEGIPIRIYEISR 625 (1757)
Q Consensus 553 ~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lL-aSgs~DG------~IrIWDl~tg~~l~~l~~~~ 625 (1757)
++|++|+.... .++. -++....+++-..-.+.+.+. ++...|+ +..+|.+-+.+.........
T Consensus 160 ~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~ 229 (282)
T PF15492_consen 160 RLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQ 229 (282)
T ss_pred CEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCC
Confidence 98888764321 0000 001111122111111111111 1111121 12344443322222112245
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc
Q 000268 626 FRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 661 (1757)
Q Consensus 626 ~~VtslafSPDGk~LAsgs~DG~I~IWdl~tGe~~~ 661 (1757)
..|..|..||||+.||+...+|.|.+|++.+-...+
T Consensus 230 d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~ 265 (282)
T PF15492_consen 230 DGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQR 265 (282)
T ss_pred CceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhc
Confidence 679999999999999999999999999997654433
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.1e-06 Score=67.48 Aligned_cols=39 Identities=21% Similarity=0.639 Sum_probs=37.2
Q ss_pred ceeEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEe
Q 000268 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWS 271 (1757)
Q Consensus 233 ~k~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWD 271 (1757)
++++++|.+|.+.|++|+|+|++.+||+|+.|++|+|||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367899999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.003 Score=81.31 Aligned_cols=318 Identities=11% Similarity=0.054 Sum_probs=166.6
Q ss_pred CCEEEEEcCCceEEEEecCCCeEEEEEecCCC------CeE--EEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCC
Q 000268 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHEG------DIT--DLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGH 326 (1757)
Q Consensus 255 G~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~------~Vt--sLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH 326 (1757)
+..|..++.++.|.-.|..+|+.+..+..... .+. .+++. ++..++.++.++.|..+|..+|+.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 44567777889999999999998877653322 010 11111 2257888888999999999999998776543
Q ss_pred CCc-----e-EEEEecCCCCceEEEEEEe---------CCCcEEEEecCCCCccceeecCCCCccccCCCCCCC-CCCCC
Q 000268 327 TAA-----V-TAIAFSPRPGSVYQLLSSS---------DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS-SSAGP 390 (1757)
Q Consensus 327 ~~~-----V-tsLafSPdg~~~~~LaSgs---------~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~-~~~~~ 390 (1757)
... + .+..+.. . .++.++ .+|.|..+|..+|+.+.+........... ...... .....
T Consensus 140 ~~~~~~~~i~ssP~v~~--~---~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~-~~~~~~~~~~~~ 213 (488)
T cd00216 140 DQVPPGYTMTGAPTIVK--K---LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAF-PTWGPDRQMWGP 213 (488)
T ss_pred CCcCcceEecCCCEEEC--C---EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCC-CCCCCCcceecC
Confidence 221 1 1112221 1 444443 46889999999999877765422110000 000000 00000
Q ss_pred CCcce-EEEEECCCCCEEEEeeCCc------------------eEEEecCCCCCCCCCCCCCcceeeecCCCCCceE--E
Q 000268 391 QSHQI-FCCAFNANGTVFVTGSSDT------------------LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNY--V 449 (1757)
Q Consensus 391 ~~~~V-~slafSpdG~~LasGs~DG------------------~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~s--L 449 (1757)
....+ ...++.+.+..+++++.++ .|.-+|+.+++. .-....-...... .
T Consensus 214 ~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~---------~W~~~~~~~~~~~~~~ 284 (488)
T cd00216 214 GGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV---------KWFYQTTPHDLWDYDG 284 (488)
T ss_pred CCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE---------EEEeeCCCCCCccccc
Confidence 01111 1345555566777776665 577777765432 1111100000000 0
Q ss_pred EEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCC
Q 000268 450 QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPR 529 (1757)
Q Consensus 450 afSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~ 529 (1757)
...|.- .... .... .....++.++.+|.+...|..+++. .|.....
T Consensus 285 ~s~p~~-------~~~~------~~~g--~~~~~V~~g~~~G~l~ald~~tG~~-----~W~~~~~-------------- 330 (488)
T cd00216 285 PNQPSL-------ADIK------PKDG--KPVPAIVHAPKNGFFYVLDRTTGKL-----ISARPEV-------------- 330 (488)
T ss_pred CCCCeE-------Eecc------ccCC--CeeEEEEEECCCceEEEEECCCCcE-----eeEeEee--------------
Confidence 000000 0000 0000 0013577888999999999998762 2322111
Q ss_pred CCCceeecCCCCCeeEEEEcCCCCEE-----------------EEEecCCeEEEEECCCCceEEEEeCCC--------CC
Q 000268 530 GGPRQRILPTPRGVNMIVWSLDNRFV-----------------LAAIMDCRICVWNAADGSLVHSLTGHT--------ES 584 (1757)
Q Consensus 530 ~~~~~~l~~h~~~VtsVafSPDG~~L-----------------aSGs~DG~I~IWDl~tgkll~~L~gH~--------~~ 584 (1757)
...++.+| +..+ .....+|.|.-.|+.+|+.+....... ..
T Consensus 331 -------------~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~ 396 (488)
T cd00216 331 -------------EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFP 396 (488)
T ss_pred -------------ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCc
Confidence 00011111 1111 112246778888888888887665321 11
Q ss_pred e--EEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCcceEE--EEEcCCCCEE
Q 000268 585 T--YVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVD--GKFSPDGASI 640 (1757)
Q Consensus 585 V--tsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~Vts--lafSPDGk~L 640 (1757)
. ..++. .+.+|+.++.||.|+.+|..+|+.+..+... ..+.. +.|..+|+..
T Consensus 397 ~~~~~~~~---~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~-~~~~a~P~~~~~~g~~y 452 (488)
T cd00216 397 HWGGSLAT---AGNLVFAGAADGYFRAFDATTGKELWKFRTP-SGIQATPMTYEVNGKQY 452 (488)
T ss_pred ccCcceEe---cCCeEEEECCCCeEEEEECCCCceeeEEECC-CCceEcCEEEEeCCEEE
Confidence 1 11222 3356777889999999999999999998753 33332 3445555433
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.5e-05 Score=83.89 Aligned_cols=197 Identities=13% Similarity=0.168 Sum_probs=117.1
Q ss_pred EEEEEECCCCCEEEEEcCCceEEEEecCCCeEEE------------EEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEE
Q 000268 246 VYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLA------------SCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1757)
Q Consensus 246 V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~------------tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWD 313 (1757)
|+.+.|+-+ ..|+++..++.+......++.++. .+..|.+.-.+-+.+-.++.++++..||.+.+.+
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 555555543 356666666666666555444332 2333443333333344567899999999999999
Q ss_pred CCCCCce-EEecCCCCceEEEEecCCCCceEEEEEEeCCC------cEEEEecCCCCccceeecCCCCccccCCCCCCCC
Q 000268 314 LPDGLPI-SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDG------TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1757)
Q Consensus 314 l~tg~~l-~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DG------tIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~ 386 (1757)
.+.-..+ ..+..-...-.+.+....+. ++.++.-| ..++|+++..+....
T Consensus 118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~----~i~s~~~g~~n~~d~~~a~~~~p~~t~~~------------------- 174 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSASRKICRHGN----SILSGGCGNWNAQDNFYANTLDPIKTLIP------------------- 174 (319)
T ss_pred chHHHhhhhhcccccccccccceeeccc----EEecCCcceEeeccceeeecccccccccc-------------------
Confidence 7652111 11111111111222233332 23332222 334444432211100
Q ss_pred CCCCCCcceEEEEECCCC-CEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccC
Q 000268 387 SAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 465 (1757)
Q Consensus 387 ~~~~~~~~V~slafSpdG-~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~ 465 (1757)
.......|.+++-+|.. .++++|+.||.+.+||++.. ..++..+..|...++.+.|.|..
T Consensus 175 -~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~--------~~p~S~l~ahk~~i~eV~FHpk~---------- 235 (319)
T KOG4714|consen 175 -SKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV--------AMPVSLLKAHKAEIWEVHFHPKN---------- 235 (319)
T ss_pred -cccccccchhhhCCcccccEEEEecCCCeEEEEEcccc--------cchHHHHHHhhhhhhheeccCCC----------
Confidence 00112238889999854 56778889999999999864 23566788999999999999864
Q ss_pred CCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCC
Q 000268 466 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 500 (1757)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t 500 (1757)
++.|++++.||.+..||..+
T Consensus 236 ---------------p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 236 ---------------PEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ---------------chheeEecCCCcEEEEcCCC
Confidence 57999999999999999885
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0035 Score=83.21 Aligned_cols=260 Identities=12% Similarity=0.129 Sum_probs=146.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEec----C
Q 000268 285 EGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA----R 360 (1757)
Q Consensus 285 ~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl----~ 360 (1757)
...|.++.|.-+..-|+.+...|.|.+-|.++.... ....-...|.+++|+||.. .++..+..++|.+-.- -
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee---~l~liT~~~tll~mT~~f~~i 143 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEE---LLALITGRQTLLFMTKDFEPI 143 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCc---EEEEEeCCcEEEEEeccccch
Confidence 368999999999998999999999999988776432 2223457899999999987 7777777777776432 1
Q ss_pred CCCccceeec--CCCCccccCCCCCCCC-------------CC---C--CCCcceEEEEECCCCCEEEEe-----eCCce
Q 000268 361 YSQFSPRIYI--PRPSDAVAGRNMAPSS-------------SA---G--PQSHQIFCCAFNANGTVFVTG-----SSDTL 415 (1757)
Q Consensus 361 tg~~~~~i~l--~~~~~~~~g~~~~~~~-------------~~---~--~~~~~V~slafSpdG~~LasG-----s~DG~ 415 (1757)
..+.+..-.. .......-|+...... .. . .....=++|+|--||.++|+. .....
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 1111100000 0000000011000000 00 0 011223468999999999983 33379
Q ss_pred EEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEE---cCCCe
Q 000268 416 ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC---SRDGS 492 (1757)
Q Consensus 416 IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSg---S~DGt 492 (1757)
|+|||.. +.... .-....+.-.+++|-|.| ..+++. +.|+.
T Consensus 224 irV~drE-g~Lns---------~se~~~~l~~~LsWkPsg--------------------------s~iA~iq~~~sd~~ 267 (1265)
T KOG1920|consen 224 IRVYDRE-GALNS---------TSEPVEGLQHSLSWKPSG--------------------------SLIAAIQCKTSDSD 267 (1265)
T ss_pred EEEeccc-chhhc---------ccCcccccccceeecCCC--------------------------CeEeeeeecCCCCc
Confidence 9999985 22111 111122333567888865 344442 44667
Q ss_pred EEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEE---EecCCeEEEEEC
Q 000268 493 AIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA---AIMDCRICVWNA 569 (1757)
Q Consensus 493 I~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaS---Gs~DG~I~IWDl 569 (1757)
|.++.-...+ ++ .+.+ ........|..++|+.++..|++ ......|++|-+
T Consensus 268 IvffErNGL~-hg-------~f~l------------------~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 268 IVFFERNGLR-HG-------EFVL------------------PFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTT 321 (1265)
T ss_pred EEEEecCCcc-cc-------cccc------------------CCcccccchheeeecCCCCceeeeecccccceEEEEEe
Confidence 8888655311 10 0111 11112233889999999999988 555556999998
Q ss_pred CCCc--eEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000268 570 ADGS--LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1757)
Q Consensus 570 ~tgk--ll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl 612 (1757)
.+.. +-+.+....... +.|+|....-+..-..+|.+.++++
T Consensus 322 ~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 322 GNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred cCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 7643 223333222222 7888844444444445565555544
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.6e-05 Score=86.40 Aligned_cols=111 Identities=21% Similarity=0.350 Sum_probs=81.3
Q ss_pred CeeEEEEcCCCC-EEEEEecCCeEEEEECCCCce-EEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEE
Q 000268 542 GVNMIVWSLDNR-FVLAAIMDCRICVWNAADGSL-VHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIR 619 (1757)
Q Consensus 542 ~VtsVafSPDG~-~LaSGs~DG~I~IWDl~tgkl-l~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~ 619 (1757)
.|++++-.|..+ .+++|+.||.+-+||.++... +..+..|..+|+.+-|||.++..|++++.||.+.-||..+ +.+.
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~-~~l~ 259 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST-TFLS 259 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC-ceEE
Confidence 388888888655 566788999999999988743 3466889999999999999999999999999999999863 2221
Q ss_pred EE-------------------e---ecCcceEEE-EEcCCCCEEEEEeCCCeEEEEE
Q 000268 620 IY-------------------E---ISRFRLVDG-KFSPDGASIILSDDVGQLYILN 653 (1757)
Q Consensus 620 ~l-------------------~---~~~~~Vtsl-afSPDGk~LAsgs~DG~I~IWd 653 (1757)
.- . .-.....++ .|.--|..|++|++-+.|++++
T Consensus 260 i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 260 ISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 10 0 001111122 4555688888888888888875
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0022 Score=74.88 Aligned_cols=194 Identities=12% Similarity=0.040 Sum_probs=117.7
Q ss_pred EEEECC-CCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEc-CCCCEEEEEeCCceEEEEECCCCCceEEecC
Q 000268 248 CAIFDR-SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVS-SNNALVASASNDCIIRVWRLPDGLPISVLRG 325 (1757)
Q Consensus 248 ~VaFSP-DG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafS-PDg~lLASgS~DGtIrVWDl~tg~~l~~l~g 325 (1757)
+++|.+ +|.++++--..+.|..|+..++.... +.... ...+++. +++.++ .+... .+.++|+.+++....+..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~-v~~~~-~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLY-VADSG-GIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEE-EEETT-CEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEE-EEEcC-ceEEEecCCCcEEEEeec
Confidence 678998 77788887788999999998876543 33222 7777887 665544 44444 456669988854433332
Q ss_pred -----CCCceEEEEecCCCCceEEEEEEeCC--------CcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCC
Q 000268 326 -----HTAAVTAIAFSPRPGSVYQLLSSSDD--------GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1757)
Q Consensus 326 -----H~~~VtsLafSPdg~~~~~LaSgs~D--------GtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~ 392 (1757)
.....+.+++.|+|. +.++.... |.|..++.. ++...... .-
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~---ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~---------------------~~ 133 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGN---LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD---------------------GL 133 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS----EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE---------------------EE
T ss_pred cCCCcccCCCceEEEcCCCC---EEEEecCCCccccccccceEEECCC-CeEEEEec---------------------Cc
Confidence 345788999999986 55554433 446666665 33221110 12
Q ss_pred cceEEEEECCCCCEEE-EeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCC
Q 000268 393 HQIFCCAFNANGTVFV-TGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDST 471 (1757)
Q Consensus 393 ~~V~slafSpdG~~La-sGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~ 471 (1757)
.....|+|+|+++.|+ +-+..+.|..|++...... ......+..+....+....+++..+|
T Consensus 134 ~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~g~pDG~~vD~~G---------------- 195 (246)
T PF08450_consen 134 GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE--LSNRRVFIDFPGGPGYPDGLAVDSDG---------------- 195 (246)
T ss_dssp SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC--EEEEEEEEE-SSSSCEEEEEEEBTTS----------------
T ss_pred ccccceEECCcchheeecccccceeEEEeccccccc--eeeeeeEEEcCCCCcCCCcceEcCCC----------------
Confidence 3367899999998765 5566788988888532110 00011111222222335667777665
Q ss_pred CcccccccCCCcEEEEcCCCeEEEEeCC
Q 000268 472 PKFKNSWFCHDNIVTCSRDGSAIIWIPR 499 (1757)
Q Consensus 472 ~~~~~~~~~~~~LvSgS~DGtI~IWDl~ 499 (1757)
.+.++....+.|.+++..
T Consensus 196 ----------~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 196 ----------NLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp -----------EEEEEETTTEEEEEETT
T ss_pred ----------CEEEEEcCCCEEEEECCC
Confidence 466666678899999876
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.8e-05 Score=91.66 Aligned_cols=162 Identities=19% Similarity=0.228 Sum_probs=116.4
Q ss_pred EEECC--CCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCccc
Q 000268 398 CAFNA--NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475 (1757)
Q Consensus 398 lafSp--dG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~ 475 (1757)
++|+- .|-.+++ +.+..|-+-++.++.. +.+ ...+.|.+++|...+
T Consensus 217 CawSlni~gyhfs~-G~sqqv~L~nvetg~~----------qsf-~sksDVfAlQf~~s~-------------------- 264 (425)
T KOG2695|consen 217 CAWSLNIMGYHFSV-GLSQQVLLTNVETGHQ----------QSF-QSKSDVFALQFAGSD-------------------- 264 (425)
T ss_pred hhhhhccceeeecc-cccceeEEEEeecccc----------ccc-ccchhHHHHHhcccC--------------------
Confidence 35543 2334334 4466677888866421 112 256678888887643
Q ss_pred ccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcC-CCCE
Q 000268 476 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL-DNRF 554 (1757)
Q Consensus 476 ~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSP-DG~~ 554 (1757)
+.++.|...|.|...|++.+.. ...-.....-|...|+++..-. ++++
T Consensus 265 ------nLv~~GcRngeI~~iDLR~rnq-------------------------G~~~~a~rlyh~Ssvtslq~Lq~s~q~ 313 (425)
T KOG2695|consen 265 ------NLVFNGCRNGEIFVIDLRCRNQ-------------------------GNGWCAQRLYHDSSVTSLQILQFSQQK 313 (425)
T ss_pred ------CeeEecccCCcEEEEEeeeccc-------------------------CCCcceEEEEcCcchhhhhhhccccce
Confidence 6899999999999999996320 1122233456888899987766 8899
Q ss_pred EEEEecCCeEEEEECCCCce---EEEEeCCCCCeEEEEE--ecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee
Q 000268 555 VLAAIMDCRICVWNAADGSL---VHSLTGHTESTYVLDV--HPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEI 623 (1757)
Q Consensus 555 LaSGs~DG~I~IWDl~tgkl---l~~L~gH~~~VtsLaf--SPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~ 623 (1757)
|++.+++|+|.+||.+.-++ +.++.||...-.-+-+ .+ ...+++++|.|...+||.+..|.++.++..
T Consensus 314 LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~-eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 314 LMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred EeeccCcCceeEeeehhhhcccceeeeeccccccccccccccc-ccceEEEccCeeEEEEEecccCceeeccCC
Confidence 99999999999999987666 8899999765443333 34 446778899999999999999999988863
|
|
| >KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.2e-05 Score=101.34 Aligned_cols=109 Identities=20% Similarity=0.239 Sum_probs=95.4
Q ss_pred CCCCCChhhHHHHHHHHHHHHhhhcccccc--cccccccccccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHH
Q 000268 1636 EQPRIDDDNRNKLLSAFAKLEQSANRVQDQ--YGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIA 1713 (1757)
Q Consensus 1636 ~~p~~~~~~r~kLls~l~kle~~~~~~~~~--~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~ 1713 (1757)
..|.|++..+.++..+|.-+.......--+ -.|.++......|+||.+|..||.|..|++|+..+-|++++.|.-|+.
T Consensus 45 d~p~i~~~~~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~ 124 (629)
T KOG1827|consen 45 DSPVIDPPLIPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFL 124 (629)
T ss_pred CccccChHHHHHHHHHHHHHHhhccccCcccchhHhhccccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHH
Confidence 567788888888888888776655333222 367788888889999999999999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCcHHHHHHHHHHHHHHHHH
Q 000268 1714 VMLSNAESYFGRNTDLSTKIKRLSDLVTRTL 1744 (1757)
Q Consensus 1714 ~i~~Na~~fn~~~s~i~~~a~~l~~~~~~~l 1744 (1757)
+|++||++||.+++.+++++..|++.|....
T Consensus 125 lm~ena~~~n~~ds~~~~~s~~l~~~~~~~~ 155 (629)
T KOG1827|consen 125 LMTENARLYNRPDSLIYKDSGELEKYFISLE 155 (629)
T ss_pred HHHHHHHHhcCcchhhhhhhhhhhcchhhhh
Confidence 9999999999999999999999999998854
|
|
| >KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription] | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.2e-06 Score=112.01 Aligned_cols=90 Identities=18% Similarity=0.273 Sum_probs=81.1
Q ss_pred cccccccccccccc--cCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHH
Q 000268 1662 VQDQYGVQKLKQVS--QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDL 1739 (1757)
Q Consensus 1662 ~~~~~~~~~~~~~~--~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~~~s~i~~~a~~l~~~ 1739 (1757)
+...+.|..++... ..++||.+|+.|||++||++||+|+||....+++.|+..+|+||+.||.+..+|+.+++.+++.
T Consensus 7 ~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~~~~~ 86 (640)
T KOG1474|consen 7 HKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQSLEKL 86 (640)
T ss_pred ccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccccchhh
Confidence 45567777777633 4589999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCC
Q 000268 1740 VTRTLSSLKAPQ 1751 (1757)
Q Consensus 1740 ~~~~l~~~~~~~ 1751 (1757)
|.+++..++.+.
T Consensus 87 ~~~~~~~~~~~~ 98 (640)
T KOG1474|consen 87 FPKKLRSMPSDE 98 (640)
T ss_pred cccccccccccc
Confidence 999998887744
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.015 Score=66.07 Aligned_cols=109 Identities=13% Similarity=0.022 Sum_probs=79.6
Q ss_pred CCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEE
Q 000268 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIA 334 (1757)
Q Consensus 255 G~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLa 334 (1757)
..+++.|+..+.+.--|..+|..+..-. -...|.+-+.- -|.+++.|+..|.+++.+..+|..+..+.....--....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 4577888888999999999998776532 12333333322 467899999999999999999988877754332222234
Q ss_pred ecCCCCceEEEEEEeCCCcEEEEecCCCCcccee
Q 000268 335 FSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRI 368 (1757)
Q Consensus 335 fSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i 368 (1757)
..+++. ++..|+.|++....|..+..++...
T Consensus 101 ~d~~~g---lIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 101 CDFDGG---LIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred EcCCCc---eEEEecCCCcEEEecccccceEEec
Confidence 456665 8999999999999999988776654
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0018 Score=79.91 Aligned_cols=302 Identities=15% Similarity=0.094 Sum_probs=155.9
Q ss_pred CCCCCEEEEEc---------CCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEE
Q 000268 252 DRSGRYVITGS---------DDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISV 322 (1757)
Q Consensus 252 SPDG~~LATGS---------~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~ 322 (1757)
|||+++++... ..+.+.|||+.+++....... ...+....|||+|+.||... ++.|.++++.++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 68898888742 357899999999765543332 67889999999999998885 67899999887744432
Q ss_pred ec-CC----------------CCceEEEEecCCCCceEEEEEE-eCCCcEEEEecCCCCccceeecCCCCccccCCCCCC
Q 000268 323 LR-GH----------------TAAVTAIAFSPRPGSVYQLLSS-SDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 384 (1757)
Q Consensus 323 l~-gH----------------~~~VtsLafSPdg~~~~~LaSg-s~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~ 384 (1757)
.. |- -+.-.++-||||++ +|+.. -.+..|..+.+........
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~---~la~~~~d~~~v~~~~~~~~~~~~~----------------- 138 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSK---YLAFLRFDEREVPEYPLPDYSPPDS----------------- 138 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSS---EEEEEEEE-TTS-EEEEEEESSSTE-----------------
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCC---EEEEEEECCcCCceEEeeccCCccc-----------------
Confidence 21 20 11235678999987 45444 3444455544321110000
Q ss_pred CCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceee---ecCCCCCceEEEEccCccccccc
Q 000268 385 SSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDV---LSGHENDVNYVQFSGCAVASRFS 461 (1757)
Q Consensus 385 ~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~---l~gH~~~V~sLafSpdg~~s~~~ 461 (1757)
.--.+..+.+-.-|.-... -.+.|+++.+++.. .+.. +..-..-+..+.|.+++
T Consensus 139 ------~yp~~~~~~YPk~G~~np~----v~l~v~~~~~~~~~-------~~~~~~~~~~~~~yl~~v~W~~d~------ 195 (353)
T PF00930_consen 139 ------QYPEVESIRYPKAGDPNPR----VSLFVVDLASGKTT-------ELDPPNSLNPQDYYLTRVGWSPDG------ 195 (353)
T ss_dssp ------SS-EEEEEE--BTTS---E----EEEEEEESSSTCCC-------EE---HHHHTSSEEEEEEEEEETT------
T ss_pred ------cCCcccccccCCCCCcCCc----eEEEEEECCCCcEE-------EeeeccccCCCccCcccceecCCC------
Confidence 0012344444333322211 13567777654321 1111 12334557778888775
Q ss_pred cccCCCCCCCCcccccccCCCcEE--EEcCCC---eEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceee
Q 000268 462 LADSSKEDSTPKFKNSWFCHDNIV--TCSRDG---SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI 536 (1757)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~Lv--SgS~DG---tI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l 536 (1757)
..|+ ....+. .+.++|+.++........ ..
T Consensus 196 --------------------~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e-------------------------~~ 230 (353)
T PF00930_consen 196 --------------------KRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE-------------------------TS 230 (353)
T ss_dssp --------------------EEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE-------------------------ES
T ss_pred --------------------cEEEEEEcccCCCEEEEEEEECCCCceeEEEEe-------------------------cC
Confidence 2122 222222 244455554331111000 00
Q ss_pred cCCCCCeeEEEEc-CCCC-EEEEEecCCe--EEEEECCCCceEEEEeCCCCCeEE-EEEecCCCcEEEEEeCCC----cE
Q 000268 537 LPTPRGVNMIVWS-LDNR-FVLAAIMDCR--ICVWNAADGSLVHSLTGHTESTYV-LDVHPFNPRIAMSAGYDG----KT 607 (1757)
Q Consensus 537 ~~h~~~VtsVafS-PDG~-~LaSGs~DG~--I~IWDl~tgkll~~L~gH~~~Vts-LafSPdd~~lLaSgs~DG----~I 607 (1757)
.+--.....+.|. +++. +|.....+|. |++++...+. ...+....-.|.. +.|.+.++.+.++|..++ .|
T Consensus 231 ~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~l 309 (353)
T PF00930_consen 231 DGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHL 309 (353)
T ss_dssp SSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEE
T ss_pred CcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEE
Confidence 0000112234443 5554 4444445554 6666765555 4466655566754 678887777777777633 45
Q ss_pred EEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEe
Q 000268 608 IVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSD 644 (1757)
Q Consensus 608 rIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs 644 (1757)
..-++..+..+..+......-..+.|||||++++...
T Consensus 310 Y~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 310 YRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp EEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred EEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 5556652444555553333336899999999998654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription] | Back alignment and domain information |
|---|
Probab=97.96 E-value=5.8e-06 Score=108.70 Aligned_cols=106 Identities=12% Similarity=0.329 Sum_probs=92.3
Q ss_pred CCCCChhhHHHHHHHHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHH
Q 000268 1637 QPRIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVML 1716 (1757)
Q Consensus 1637 ~p~~~~~~r~kLls~l~kle~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~ 1716 (1757)
.|.++.+.+-.. .+++.+-..+...++.|.|..+++....|+||.+|+.||||+||.+...-+-|.+.+++..||++|+
T Consensus 1373 nplld~~d~v~~-~~~d~~vs~~~~ipes~~f~~~v~~k~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~ 1451 (1563)
T KOG0008|consen 1373 NPLLDDDDQVAF-FILDNIVSQMKEIPESWPFHEPVNKKRVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIY 1451 (1563)
T ss_pred CcccCccchhhH-hhhhhHHHHHHhcchhcccccccchhhchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhc
Confidence 466676666555 6666766667778999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhcCCCcHHHHHHHHHHHHHHHH
Q 000268 1717 SNAESYFGRNTDLSTKIKRLSDLVTRT 1743 (1757)
Q Consensus 1717 ~Na~~fn~~~s~i~~~a~~l~~~~~~~ 1743 (1757)
.||..||++++.+..+|+.+-++-+..
T Consensus 1452 ~n~~~~ng~e~~y~~k~~k~~ev~~~~ 1478 (1563)
T KOG0008|consen 1452 VNSVEYNGAESAYTKKARKIGEVGLAN 1478 (1563)
T ss_pred ccceeecCccccccHHHHHHHHHHHHH
Confidence 999999999999999998876664443
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.026 Score=73.39 Aligned_cols=351 Identities=11% Similarity=0.081 Sum_probs=175.6
Q ss_pred CCEEEEEcCCceEEEEecCCCeEEEEEecCC-CCeE---E-------EEEcCCCCEEEEEeCCceEEEEECCCCCceEEe
Q 000268 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHE-GDIT---D-------LAVSSNNALVASASNDCIIRVWRLPDGLPISVL 323 (1757)
Q Consensus 255 G~~LATGS~DGtIkIWDl~tg~~l~tL~gH~-~~Vt---s-------LafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l 323 (1757)
+.+|+.++.++.|.-.|..+|+.+-++.... ..+. + +++ .+..|+.++.++.|...|..+|+.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4567777778889999999999888765311 1111 1 122 2346777888999999999999988765
Q ss_pred cCCC-CceEEEEecC---CCCceEEEEEEe------CCCcEEEEecCCCCccceeecCCCCcc-----------ccCCCC
Q 000268 324 RGHT-AAVTAIAFSP---RPGSVYQLLSSS------DDGTCRIWDARYSQFSPRIYIPRPSDA-----------VAGRNM 382 (1757)
Q Consensus 324 ~gH~-~~VtsLafSP---dg~~~~~LaSgs------~DGtIrIWDl~tg~~~~~i~l~~~~~~-----------~~g~~~ 382 (1757)
.... ..-..+.-+| ++ .|+++. .+|.|..+|+.+|+.+-++........ ..+...
T Consensus 147 ~~~~~~~~~~~tssP~v~~g----~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~t 222 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKG----KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKT 222 (527)
T ss_pred ccccccccccccCCcEEECC----EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCC
Confidence 4211 0001111112 22 345443 368999999999998776644222110 000000
Q ss_pred CCCCCCCCCCcceE-EEEECCCCCEEEEeeCCc----------------eEEEecCCCCCCCCCCCCCcceeeecCCCCC
Q 000268 383 APSSSAGPQSHQIF-CCAFNANGTVFVTGSSDT----------------LARVWNACKPNTDDSDQPNHEIDVLSGHEND 445 (1757)
Q Consensus 383 ~~~~~~~~~~~~V~-slafSpdG~~LasGs~DG----------------~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~ 445 (1757)
............++ .+++.+...+|+.+..+. .|.-.|+.++ +..-.++.....
T Consensus 223 w~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG---------~~~W~~Q~~~~D 293 (527)
T TIGR03075 223 WPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTG---------KIKWHYQTTPHD 293 (527)
T ss_pred CCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccC---------CEEEeeeCCCCC
Confidence 00011111222333 457777777777666432 2333333332 122222222222
Q ss_pred ceEEEEccCccccccccccCCCCCCCCcccccccCC---CcEEEEcCCCeEEEEeCCCCCCCccc-----cccccccccc
Q 000268 446 VNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCH---DNIVTCSRDGSAIIWIPRSRRSHPKA-----ARWTQAYHLK 517 (1757)
Q Consensus 446 V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~---~~LvSgS~DGtI~IWDl~t~k~~~~~-----~~w~~~~~l~ 517 (1757)
+....... .+.+......+ ..++.+..+|.+.+.|..+++..... ..|.......
T Consensus 294 ~wD~d~~~-----------------~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~ 356 (527)
T TIGR03075 294 EWDYDGVN-----------------EMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLK 356 (527)
T ss_pred CccccCCC-----------------CcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCC
Confidence 22111100 00000000111 47789999999999999998753110 1232221111
Q ss_pred CCCCCCCC-----CCCCCCCceeecCCCCCe--eEEEEcCCCCEEEEEec------------------------------
Q 000268 518 VPPPPMPP-----QPPRGGPRQRILPTPRGV--NMIVWSLDNRFVLAAIM------------------------------ 560 (1757)
Q Consensus 518 ~~~~~~~~-----~~~~~~~~~~l~~h~~~V--tsVafSPDG~~LaSGs~------------------------------ 560 (1757)
...+.... .++.........+..+.+ ..++++|+..+++....
T Consensus 357 ~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~ 436 (527)
T TIGR03075 357 TGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPP 436 (527)
T ss_pred CCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCC
Confidence 10000000 000000001111111111 23455555554443322
Q ss_pred ---CCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCcceEE--EEEcC
Q 000268 561 ---DCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVD--GKFSP 635 (1757)
Q Consensus 561 ---DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~Vts--lafSP 635 (1757)
-|.|.-+|+.+|+.+...........+.... .+.+++.++.||.++.+|..+|+.+..+..+. .+.. +.|.-
T Consensus 437 ~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t--~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~-~~~a~P~ty~~ 513 (527)
T TIGR03075 437 DDHMGSLIAWDPITGKIVWEHKEDFPLWGGVLAT--AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGS-GIVGPPVTYEQ 513 (527)
T ss_pred CCCceeEEEEeCCCCceeeEecCCCCCCCcceEE--CCcEEEEECCCCeEEEEECCCCCEeEEEeCCC-CceecCEEEEe
Confidence 2568888999998888765332212222111 33466678889999999999999999987543 2222 34445
Q ss_pred CCCEE
Q 000268 636 DGASI 640 (1757)
Q Consensus 636 DGk~L 640 (1757)
+|+..
T Consensus 514 ~G~qY 518 (527)
T TIGR03075 514 DGKQY 518 (527)
T ss_pred CCEEE
Confidence 66533
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.4e-05 Score=63.08 Aligned_cols=39 Identities=38% Similarity=0.708 Sum_probs=37.2
Q ss_pred CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEE
Q 000268 275 AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1757)
Q Consensus 275 g~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWD 313 (1757)
|+++.++.+|.+.|++|+|+|++.+|++|+.|+.|+|||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 468899999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00054 Score=81.26 Aligned_cols=94 Identities=18% Similarity=0.156 Sum_probs=82.4
Q ss_pred EEEEecCCCeEEEEEecCCCCeEEEEEcCCCC-EEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEE
Q 000268 267 VKIWSMETAYCLASCRGHEGDITDLAVSSNNA-LVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQL 345 (1757)
Q Consensus 267 IkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~-lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~L 345 (1757)
|++.+..+.+.+.-+.+|...|.+|+|+|... +|..++.+..|.|.|+++...+..+..+ ..+++++|.-+.. ++|
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~--h~I 251 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDER--HVI 251 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCc--cee
Confidence 77777777776777788999999999999877 7888999999999999999999888877 8999999998875 589
Q ss_pred EEEeCCCcEEEEecCCCC
Q 000268 346 LSSSDDGTCRIWDARYSQ 363 (1757)
Q Consensus 346 aSgs~DGtIrIWDl~tg~ 363 (1757)
..|-..|.|.|||++...
T Consensus 252 YaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 252 YAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred EEeccCceEEEEEccCCC
Confidence 999999999999998654
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0021 Score=76.18 Aligned_cols=235 Identities=15% Similarity=0.095 Sum_probs=143.6
Q ss_pred eeEEEEcC-CCCEEEEEecCCe-EEEEECCCCceEEEEeCCCCCeE--EEEEecCCCcEEEEE-----eCCCcEEEEeCC
Q 000268 543 VNMIVWSL-DNRFVLAAIMDCR-ICVWNAADGSLVHSLTGHTESTY--VLDVHPFNPRIAMSA-----GYDGKTIVWDIW 613 (1757)
Q Consensus 543 VtsVafSP-DG~~LaSGs~DG~-I~IWDl~tgkll~~L~gH~~~Vt--sLafSPdd~~lLaSg-----s~DG~IrIWDl~ 613 (1757)
...++.+| .+..++.+-.-|+ +.+||..+|+..+.+....+.-+ ..+||+ ++++|++. ...|.|-|||+.
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECc
Confidence 34577888 5566667766665 78999999999887765444322 368999 55555554 346899999998
Q ss_pred -CCceEEEEeecCcceEEEEEcCCCCEEEEEeC------------------CCeEEEEECCCCccccccccc-eeecCCC
Q 000268 614 -EGIPIRIYEISRFRLVDGKFSPDGASIILSDD------------------VGQLYILNTGQGESQKDAKYD-QFFLGDY 673 (1757)
Q Consensus 614 -tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~------------------DG~I~IWdl~tGe~~~~~~~~-~~fs~D~ 673 (1757)
+.+.+..+..+.-....+.+.|||+.|+++.. +-.|...|..+|+.+...... ..-...-
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 56778888877667778999999988888621 224666777777766542211 1111234
Q ss_pred ccEEEccCCceeec-ccccccCcCCCCCccc--CCCC----CCCCCcchhhhhcccccccceEECCCCCeEEEeeCCCCC
Q 000268 674 RPLVQDTYGNVLDQ-ETQLAPHRRNLQDPLC--DSAM----IPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLD 746 (1757)
Q Consensus 674 r~Li~d~~g~vlD~-~tql~phl~~l~~~L~--D~~~----~p~p~~~Q~l~~~r~~~v~~lAfSPDG~~LAvg~d~s~~ 746 (1757)
|.|..+..|.|+.. +-+-.+.. .++++. +.+. .+.++.. ...-...+-+||++++|.++|+. ....
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~--~~PLva~~~~g~~~~~~~~p~~~---~~~l~~Y~gSIa~~~~g~~ia~t--sPrG 238 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGD--APPLVALHRRGGALRLLPAPEEQ---WRRLNGYIGSIAADRDGRLIAVT--SPRG 238 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCc--cCCeEEEEcCCCcceeccCChHH---HHhhCCceEEEEEeCCCCEEEEE--CCCC
Confidence 56666777766442 22222221 122222 1111 1111111 11112347799999999999888 2345
Q ss_pred CceEeeccCCcccccC-CCccccceeeeCCCCCcccCCCCC
Q 000268 747 QGYQLQPLADLDVMID-PLPEFIDVMDWEPENEVQSDDNDS 786 (1757)
Q Consensus 747 ~~v~l~~l~~~~~l~~-plp~~i~~~~~sPDg~~ls~~~~s 786 (1757)
..+.+|+..++..+.. ++++ ...++..+++..++.....
T Consensus 239 g~~~~~d~~tg~~~~~~~l~D-~cGva~~~~~f~~ssG~G~ 278 (305)
T PF07433_consen 239 GRVAVWDAATGRLLGSVPLPD-ACGVAPTDDGFLVSSGQGQ 278 (305)
T ss_pred CEEEEEECCCCCEeeccccCc-eeeeeecCCceEEeCCCcc
Confidence 6899999988886643 5565 4556777777554444333
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0042 Score=82.48 Aligned_cols=266 Identities=12% Similarity=0.111 Sum_probs=142.5
Q ss_pred CCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCE
Q 000268 327 TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTV 406 (1757)
Q Consensus 327 ~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~ 406 (1757)
...|.++.|..+.. .++.+...|.|.+-|..+...... +.-...|.+++|+||+.+
T Consensus 68 d~~i~s~~fl~d~~---~i~v~~~~G~iilvd~et~~~eiv---------------------g~vd~GI~aaswS~Dee~ 123 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTN---SICVITALGDIILVDPETLELEIV---------------------GNVDNGISAASWSPDEEL 123 (1265)
T ss_pred CcceEEEEEecccc---eEEEEecCCcEEEEcccccceeee---------------------eeccCceEEEeecCCCcE
Confidence 36899999999876 788888889999988776543211 123566999999999999
Q ss_pred EEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEE-------EEccCcc--cccccccc----CCCCCCCCc
Q 000268 407 FVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYV-------QFSGCAV--ASRFSLAD----SSKEDSTPK 473 (1757)
Q Consensus 407 LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sL-------afSpdg~--~s~~~~~~----~~~~~~~~~ 473 (1757)
++..+..+++.+-.-. ...... + .+..-....+..-.+ +|.+... ..+-.... ........+
T Consensus 124 l~liT~~~tll~mT~~-f~~i~E-~---~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~ 198 (1265)
T KOG1920|consen 124 LALITGRQTLLFMTKD-FEPIAE-K---PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHK 198 (1265)
T ss_pred EEEEeCCcEEEEEecc-ccchhc-c---ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCC
Confidence 9999888877654321 000000 0 000000000001111 1111100 00000000 000111222
Q ss_pred ccccccCCC-cEEEE----cCC-CeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEE
Q 000268 474 FKNSWFCHD-NIVTC----SRD-GSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 547 (1757)
Q Consensus 474 ~~~~~~~~~-~LvSg----S~D-GtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVa 547 (1757)
...+|-++. ++++. ..+ ..|+|||-.. ... . .-.....--.+++
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg-~Ln-------------s----------------~se~~~~l~~~Ls 248 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDREG-ALN-------------S----------------TSEPVEGLQHSLS 248 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEecccc-hhh-------------c----------------ccCccccccccee
Confidence 334554444 55541 233 7899998762 100 0 0001112235789
Q ss_pred EcCCCCEEEEE---ecCCeEEEEECCCCceEE----EEeCCCCCeEEEEEecCCCcEEEE---EeCCCcEEEEeCCCCce
Q 000268 548 WSLDNRFVLAA---IMDCRICVWNAADGSLVH----SLTGHTESTYVLDVHPFNPRIAMS---AGYDGKTIVWDIWEGIP 617 (1757)
Q Consensus 548 fSPDG~~LaSG---s~DG~I~IWDl~tgkll~----~L~gH~~~VtsLafSPdd~~lLaS---gs~DG~IrIWDl~tg~~ 617 (1757)
|-|.|.++++- +.|+.|.+|.- +|-... .+......|..++|+. ++.+|+. ......|++|-+.+..-
T Consensus 249 WkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns-~sdiLAv~~~~~e~~~v~lwt~~NyhW 326 (1265)
T KOG1920|consen 249 WKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNS-NSDILAVVTSNLENSLVQLWTTGNYHW 326 (1265)
T ss_pred ecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecC-CCCceeeeecccccceEEEEEecCeEE
Confidence 99999999884 34567989885 343222 2233334489999998 6667665 44445599999866532
Q ss_pred --EEEEeecCcceEEEEEcCCC-CEEEEEeCCCeEEEEECC
Q 000268 618 --IRIYEISRFRLVDGKFSPDG-ASIILSDDVGQLYILNTG 655 (1757)
Q Consensus 618 --l~~l~~~~~~VtslafSPDG-k~LAsgs~DG~I~IWdl~ 655 (1757)
-+.+....... +.|+|-. ..|.+...+|.+.++++.
T Consensus 327 YLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 327 YLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred EEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEEE
Confidence 12222122222 7899953 344455577777777653
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00031 Score=89.27 Aligned_cols=149 Identities=15% Similarity=0.204 Sum_probs=109.1
Q ss_pred CCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEE
Q 000268 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISV 322 (1757)
Q Consensus 243 ~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~ 322 (1757)
...++|++++ +++||-|+.+|.|++.+.. |.. .+...|+.. .-+|.+++||+.||.|.|-.+-+.+...+
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 3567888887 6799999999999999976 433 444445544 56899999999999999999988877766
Q ss_pred ecCCCCceEEEEecCC--CCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEE
Q 000268 323 LRGHTAAVTAIAFSPR--PGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 400 (1757)
Q Consensus 323 l~gH~~~VtsLafSPd--g~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slaf 400 (1757)
+. ...++.+|+++|+ ......+++||.-| +.++.-+= .... .........+.|.++.|
T Consensus 109 ~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~w---lgnk---------------~~v~l~~~eG~I~~i~W 168 (846)
T KOG2066|consen 109 YD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNW---LGNK---------------DSVVLSEGEGPIHSIKW 168 (846)
T ss_pred Ee-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhh---hcCc---------------cceeeecCccceEEEEe
Confidence 65 4578999999998 33334899999988 77764221 1100 00123345778999999
Q ss_pred CCCCCEEEEeeCCceEEEecCCCC
Q 000268 401 NANGTVFVTGSSDTLARVWNACKP 424 (1757)
Q Consensus 401 SpdG~~LasGs~DG~IrVWDl~t~ 424 (1757)
.|++||-+..+| |+|||+.+.
T Consensus 169 --~g~lIAWand~G-v~vyd~~~~ 189 (846)
T KOG2066|consen 169 --RGNLIAWANDDG-VKVYDTPTR 189 (846)
T ss_pred --cCcEEEEecCCC-cEEEecccc
Confidence 577888887666 899999653
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=5.6e-05 Score=87.64 Aligned_cols=125 Identities=16% Similarity=0.122 Sum_probs=102.9
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCC-----ceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000268 539 TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG-----SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1757)
Q Consensus 539 h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tg-----kll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~ 613 (1757)
....|.++.|...+.+++.|+.+|.|.++|++.+ .+.+.+. |...|+++..-.++..+|++.+.+|+|++||++
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R 329 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR 329 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence 5567888899988999999999999999999764 4455554 888999998877677888888999999999998
Q ss_pred CCce---EEEEeecCcceEE--EEEcCCCCEEEEEeCCCeEEEEECCCCccccccc
Q 000268 614 EGIP---IRIYEISRFRLVD--GKFSPDGASIILSDDVGQLYILNTGQGESQKDAK 664 (1757)
Q Consensus 614 tg~~---l~~l~~~~~~Vts--lafSPDGk~LAsgs~DG~I~IWdl~tGe~~~~~~ 664 (1757)
--++ +..+.+|...-.- +.+.+....|+++++|-..+||.+..|..+...+
T Consensus 330 ~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 330 ATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred hhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 7766 8889887654333 4557778888999999999999999998876655
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0005 Score=81.49 Aligned_cols=93 Identities=20% Similarity=0.287 Sum_probs=76.4
Q ss_pred EEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCC
Q 000268 309 IRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 388 (1757)
Q Consensus 309 IrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~ 388 (1757)
|++.+..+.+....+.+|...|..++|+|...+ ++..++.+..|.|.|+++..++.....
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~G--Ll~~asl~nkiki~dlet~~~vssy~a------------------ 234 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEG--LLGLASLGNKIKIMDLETSCVVSSYIA------------------ 234 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccc--eeeeeccCceEEEEecccceeeeheec------------------
Confidence 777777777777778889999999999998753 688999999999999998877665532
Q ss_pred CCCCcceEEEEECCCC-CEEEEeeCCceEEEecCCCC
Q 000268 389 GPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKP 424 (1757)
Q Consensus 389 ~~~~~~V~slafSpdG-~~LasGs~DG~IrVWDl~t~ 424 (1757)
...+++++|.-|. .+|.+|...|.|.|||++..
T Consensus 235 ---~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 235 ---YNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred ---cCCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 2569999998865 67888888999999999764
|
|
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=97.78 E-value=2e-05 Score=101.75 Aligned_cols=105 Identities=19% Similarity=0.285 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhh
Q 000268 1643 DNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESY 1722 (1757)
Q Consensus 1643 ~~r~kLls~l~kle~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~f 1722 (1757)
....++++...+..... .....-.+.++.....+|+||.+|+.|+++..|++++++..|.++.++..|+.+++.||++|
T Consensus 1027 ~~~~~i~~~~~~~~~~~-~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~~ 1105 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSA-GRELSEVFLKLPSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNARTY 1105 (1157)
T ss_pred HHHHHHHHHHHhccccc-ccccchhcccCcccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhhh
Confidence 44555555555543321 22233466777777889999999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHhCCC
Q 000268 1723 FGRNTDLSTKIKRLSDLVTRTLSSLK 1748 (1757)
Q Consensus 1723 n~~~s~i~~~a~~l~~~~~~~l~~~~ 1748 (1757)
|+.+|.++..|..|.++|......+.
T Consensus 1106 ~~egs~~y~d~~~l~~~~~~~~~~~~ 1131 (1157)
T KOG0386|consen 1106 NEEGSRVYEDAIVLQSVFKSARQEIS 1131 (1157)
T ss_pred ccCCceechhHHHHHHHHhhhHHHHh
Confidence 99999999999999999988776655
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0028 Score=80.15 Aligned_cols=117 Identities=23% Similarity=0.258 Sum_probs=92.6
Q ss_pred CCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEE-EecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCce
Q 000268 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLAS-CRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI 320 (1757)
Q Consensus 242 H~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~t-L~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l 320 (1757)
|...|.--+++..+++|+.|+.-|.|++|+-.+|..... ..+..+.+..+.++++..++|.|+..|.|.|+-+..+.+-
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 444566667888899999999999999999887765432 2245566777888999999999999999999988764321
Q ss_pred -----EEe-cCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCC
Q 000268 321 -----SVL-RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY 361 (1757)
Q Consensus 321 -----~~l-~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~t 361 (1757)
..+ ..|...|++++|++++. .|++|...|.|.+-.+..
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~---k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGM---KLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEeccccc---EEeecCCCceEEEEEech
Confidence 111 24778999999999997 899999999999988776
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0029 Score=80.92 Aligned_cols=105 Identities=10% Similarity=0.021 Sum_probs=78.1
Q ss_pred EcCCCCEEEEEecCCeEEEEECCC-----CceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce-----
Q 000268 548 WSLDNRFVLAAIMDCRICVWNAAD-----GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIP----- 617 (1757)
Q Consensus 548 fSPDG~~LaSGs~DG~I~IWDl~t-----gkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~----- 617 (1757)
+.++|++...+ ++.|.+.|..+ .+.+..+. -......+.++|++..+++++..+.+|.|.|+.+.+.
T Consensus 284 ~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 284 AVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 45688877763 67899999988 34555554 3344678999997777777777899999999987552
Q ss_pred -------EEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 000268 618 -------IRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 656 (1757)
Q Consensus 618 -------l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~t 656 (1757)
+.....+.+ ....+|.++|....+...|.+|..|++..
T Consensus 361 ~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 444443333 34579999999777888999999999875
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.01 Score=71.15 Aligned_cols=282 Identities=13% Similarity=0.113 Sum_probs=158.8
Q ss_pred ceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC----------CceEEEEECCCCCceEEecCC---C----
Q 000268 265 RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN----------DCIIRVWRLPDGLPISVLRGH---T---- 327 (1757)
Q Consensus 265 GtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~----------DGtIrVWDl~tg~~l~~l~gH---~---- 327 (1757)
+.|.|+|..+++.+..+.. +-.-.+.++|+++.+++++. .-.|.+||..+..+...+.-. .
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 5899999999999888763 33445778999998886532 346999999998776644211 1
Q ss_pred CceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCC-CCE
Q 000268 328 AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN-GTV 406 (1757)
Q Consensus 328 ~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpd-G~~ 406 (1757)
.....++++.+++.. ++.=.+--..|.|.|+..++.+..+.++. |.-.-|. ..-
T Consensus 95 ~~~~~~~ls~dgk~~-~V~N~TPa~SVtVVDl~~~kvv~ei~~PG------------------------C~~iyP~~~~~ 149 (342)
T PF06433_consen 95 PYKNMFALSADGKFL-YVQNFTPATSVTVVDLAAKKVVGEIDTPG------------------------CWLIYPSGNRG 149 (342)
T ss_dssp --GGGEEE-TTSSEE-EEEEESSSEEEEEEETTTTEEEEEEEGTS------------------------EEEEEEEETTE
T ss_pred ccccceEEccCCcEE-EEEccCCCCeEEEEECCCCceeeeecCCC------------------------EEEEEecCCCc
Confidence 122346778887621 22233445678899999888877765421 2112222 244
Q ss_pred EEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccc--cCCCcE
Q 000268 407 FVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW--FCHDNI 484 (1757)
Q Consensus 407 LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~--~~~~~L 484 (1757)
|.+-|.||.+....+... ++.... ++ -.|.++. .+.+.... .....+
T Consensus 150 F~~lC~DGsl~~v~Ld~~--------Gk~~~~---~t-----~~F~~~~---------------dp~f~~~~~~~~~~~~ 198 (342)
T PF06433_consen 150 FSMLCGDGSLLTVTLDAD--------GKEAQK---ST-----KVFDPDD---------------DPLFEHPAYSRDGGRL 198 (342)
T ss_dssp EEEEETTSCEEEEEETST--------SSEEEE---EE-----EESSTTT---------------S-B-S--EEETTTTEE
T ss_pred eEEEecCCceEEEEECCC--------CCEeEe---ec-----cccCCCC---------------cccccccceECCCCeE
Confidence 777788998888877531 112111 10 1222211 01111111 112456
Q ss_pred EEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEec---C
Q 000268 485 VTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM---D 561 (1757)
Q Consensus 485 vSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~---D 561 (1757)
+-.+..|.|+--|+..... .+...+.+.... ...-.=..++-.-+++++....|++.-. +
T Consensus 199 ~F~Sy~G~v~~~dlsg~~~-----~~~~~~~~~t~~------------e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~ 261 (342)
T PF06433_consen 199 YFVSYEGNVYSADLSGDSA-----KFGKPWSLLTDA------------EKADGWRPGGWQLIAYHAASGRLYVLMHQGGE 261 (342)
T ss_dssp EEEBTTSEEEEEEETTSSE-----EEEEEEESS-HH------------HHHTTEEE-SSS-EEEETTTTEEEEEEEE--T
T ss_pred EEEecCCEEEEEeccCCcc-----cccCcccccCcc------------ccccCcCCcceeeeeeccccCeEEEEecCCCC
Confidence 6677888888877775331 111111110000 0000001133445677766655554321 2
Q ss_pred C-------eEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEE-eCCCcEEEEeCCCCceEEEEe
Q 000268 562 C-------RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA-GYDGKTIVWDIWEGIPIRIYE 622 (1757)
Q Consensus 562 G-------~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSg-s~DG~IrIWDl~tg~~l~~l~ 622 (1757)
+ .|.++|+.+++.+..+.. ...+.+|+.+.++.-+|++. ..++.|.|||..+|+.++.+.
T Consensus 262 gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 262 GSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp T-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred CCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 2 388999999999998874 23477899998665565544 568999999999999999887
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0098 Score=76.68 Aligned_cols=104 Identities=13% Similarity=0.125 Sum_probs=70.4
Q ss_pred EEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEE-----------------EeCCCcEEEEeCCCCc
Q 000268 554 FVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMS-----------------AGYDGKTIVWDIWEGI 616 (1757)
Q Consensus 554 ~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaS-----------------gs~DG~IrIWDl~tg~ 616 (1757)
.+++++.+|.+..+|..+|+++....... ..++.+| +.+++. ...+|.|.-.|+.+|+
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~ 377 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK 377 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc
Confidence 67788899999999999999988764211 1233333 222221 1246789999999999
Q ss_pred eEEEEeecC--------cceEEEEEcCCCCEEEEEeCCCeEEEEECCCCccccc
Q 000268 617 PIRIYEISR--------FRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKD 662 (1757)
Q Consensus 617 ~l~~l~~~~--------~~VtslafSPDGk~LAsgs~DG~I~IWdl~tGe~~~~ 662 (1757)
.+....... .+.......-.+.+|++++.+|.|+.+|..+|+.+-.
T Consensus 378 ~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~ 431 (488)
T cd00216 378 VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWK 431 (488)
T ss_pred EeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeE
Confidence 998876441 1111111123567888889999999999999987643
|
The alignment model contains an 8-bladed beta-propeller. |
| >cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily | Back alignment and domain information |
|---|
Probab=97.73 E-value=1.3e-05 Score=82.18 Aligned_cols=79 Identities=6% Similarity=0.011 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhhhccccccccccccccc--ccCCCccccCCCCCCHHHHHHHhhhc-------ccCCHHHHHHHHHHH
Q 000268 1645 RNKLLSAFAKLEQSANRVQDQYGVQKLKQV--SQKTNFTNRFPVPLSLDVIQSRLENN-------YYRGLEAVKHDIAVM 1715 (1757)
Q Consensus 1645 r~kLls~l~kle~~~~~~~~~~~~~~~~~~--~~~~~y~~~i~~Pmdl~tI~~Rlen~-------~Yr~~~~~~~Dv~~i 1715 (1757)
..+++..+.++.. +..++.|..+++. ...|+|+++|++||||+||+++|++. +|---+....++.++
T Consensus 5 ~~~~l~~l~~~~~----~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (114)
T cd05494 5 LERVLRELKRHRR----NEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDD 80 (114)
T ss_pred HHHHHHHHHHhhh----CCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHcccccccccccccccccccccccc
Confidence 4455555555432 5577888888888 78999999999999999999999986 666666666777778
Q ss_pred HHhhhhhcCCCc
Q 000268 1716 LSNAESYFGRNT 1727 (1757)
Q Consensus 1716 ~~Na~~fn~~~s 1727 (1757)
..||..||...-
T Consensus 81 ~~~~~~~~~~~~ 92 (114)
T cd05494 81 EGRRSPSNIYAV 92 (114)
T ss_pred ccccCcccccch
Confidence 888777776543
|
Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0003 Score=90.03 Aligned_cols=170 Identities=15% Similarity=0.231 Sum_probs=125.7
Q ss_pred cccccceeEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC--
Q 000268 228 TMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN-- 305 (1757)
Q Consensus 228 ~~~~~~k~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~-- 305 (1757)
.+..+.+..+...--.+.|+-+. .++++|.+|...|+|.+-|..+.+.++++..|++.|.++.. .|++|++++.
T Consensus 162 ~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~ 237 (1118)
T KOG1275|consen 162 IDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSM 237 (1118)
T ss_pred eecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeeccc
Confidence 34455556665554444444444 46889999999999999999999999999999999998776 4788888875
Q ss_pred -------CceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCC-ccceeecCCCCccc
Q 000268 306 -------DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ-FSPRIYIPRPSDAV 377 (1757)
Q Consensus 306 -------DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~-~~~~i~l~~~~~~~ 377 (1757)
|..|+|||++..+.+.-+.-+-++ .-+.|+|.-. ..+++++..|.+.+-|..+-. ....+
T Consensus 238 R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~--t~~~V~S~sGq~q~vd~~~lsNP~~~~--------- 305 (1118)
T KOG1275|consen 238 RRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLT--TRLAVTSQSGQFQFVDTATLSNPPAGV--------- 305 (1118)
T ss_pred ccccccccchhhhhhhhhhhccCCcccccCc-hhhhhccccc--ceEEEEecccceeeccccccCCCccce---------
Confidence 556899999887776666555444 5678888654 378889999999998843221 10000
Q ss_pred cCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecC
Q 000268 378 AGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNA 421 (1757)
Q Consensus 378 ~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl 421 (1757)
....+....+..++++++|..+|.|..+|.|.+|.-
T Consensus 306 --------~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 306 --------KMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred --------eEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 111233455899999999999999999999999973
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0012 Score=84.34 Aligned_cols=160 Identities=19% Similarity=0.198 Sum_probs=111.2
Q ss_pred EccCCCCEEEEEECC-------------CCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCC-----CCEE
Q 000268 239 VRGHRNAVYCAIFDR-------------SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSN-----NALV 300 (1757)
Q Consensus 239 L~GH~~~V~~VaFSP-------------DG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPD-----g~lL 300 (1757)
|..|.+.|+-..+.- +|.++||||.||+|.|-.+-+.+...++. ...++.+|+++|+ .+.+
T Consensus 54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~f 132 (846)
T KOG2066|consen 54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQF 132 (846)
T ss_pred eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhhe
Confidence 445666655555544 49999999999999999999988877765 4578999999998 5588
Q ss_pred EEEeCCceEEEEECC--CCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCcccc
Q 000268 301 ASASNDCIIRVWRLP--DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVA 378 (1757)
Q Consensus 301 ASgS~DGtIrVWDl~--tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~ 378 (1757)
++|+..| +.++.-. ..+.-..+....++|.++.|..+ ++|-+..+| |+|||+.+++.+..+..+...
T Consensus 133 v~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~-----lIAWand~G-v~vyd~~~~~~l~~i~~p~~~---- 201 (846)
T KOG2066|consen 133 VSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN-----LIAWANDDG-VKVYDTPTRQRLTNIPPPSQS---- 201 (846)
T ss_pred eecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc-----EEEEecCCC-cEEEeccccceeeccCCCCCC----
Confidence 9999888 7776421 11222246667799999999864 677777777 999999988766655322210
Q ss_pred CCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCC
Q 000268 379 GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNAC 422 (1757)
Q Consensus 379 g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~ 422 (1757)
.........+.|.++.+ |+.|= ..+|+|..++
T Consensus 202 ----------~R~e~fpphl~W~~~~~-LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 202 ----------VRPELFPPHLHWQDEDR-LVIGW-GDSVKICSIK 233 (846)
T ss_pred ----------CCcccCCCceEecCCCe-EEEec-CCeEEEEEEe
Confidence 01122234578886655 55553 4468888886
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0023 Score=81.13 Aligned_cols=70 Identities=13% Similarity=0.186 Sum_probs=63.3
Q ss_pred EEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECC
Q 000268 246 VYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP 315 (1757)
Q Consensus 246 V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~ 315 (1757)
+++++|+|..-.||.|-.-|.+.+|...+.+.......|..+|..+.||++|..|+++..=|.|.+|...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 4569999999999999999999999998877766667899999999999999999999999999999864
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00091 Score=85.81 Aligned_cols=185 Identities=12% Similarity=0.146 Sum_probs=136.9
Q ss_pred CCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEE
Q 000268 254 SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAI 333 (1757)
Q Consensus 254 DG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsL 333 (1757)
++..++.|+-...+..+|+.+++..+...-..+.|+-|.. ++++|.+|...|+|.+-|..+.+.+.++..|++.|.++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 4556788888788899999998888877655556666654 58899999999999999999999999999999999887
Q ss_pred EecCCCCceEEEEEEeC---------CCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCC
Q 000268 334 AFSPRPGSVYQLLSSSD---------DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG 404 (1757)
Q Consensus 334 afSPdg~~~~~LaSgs~---------DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG 404 (1757)
....+ .|+++|. |..|+|||++..+.+.-+.++.. ..-+.|.|.-
T Consensus 224 Dv~GN-----lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~---------------------P~flrf~Psl 277 (1118)
T KOG1275|consen 224 DVQGN-----LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG---------------------PQFLRFHPSL 277 (1118)
T ss_pred eccCC-----eEEEeecccccccccccchhhhhhhhhhhccCCcccccC---------------------chhhhhcccc
Confidence 76643 7888875 45689999998776554432211 1334566643
Q ss_pred -CEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCc
Q 000268 405 -TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDN 483 (1757)
Q Consensus 405 -~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (1757)
..+|+.+..|...+-|..+-. .+...+..+......+..+.+++++ +.
T Consensus 278 ~t~~~V~S~sGq~q~vd~~~ls-----NP~~~~~~v~p~~s~i~~fDiSsn~--------------------------~a 326 (1118)
T KOG1275|consen 278 TTRLAVTSQSGQFQFVDTATLS-----NPPAGVKMVNPNGSGISAFDISSNG--------------------------DA 326 (1118)
T ss_pred cceEEEEecccceeeccccccC-----CCccceeEEccCCCcceeEEecCCC--------------------------ce
Confidence 467888888999998853211 1222233334444558888888876 78
Q ss_pred EEEEcCCCeEEEEe
Q 000268 484 IVTCSRDGSAIIWI 497 (1757)
Q Consensus 484 LvSgS~DGtI~IWD 497 (1757)
++.|..+|.|.+|-
T Consensus 327 lafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 327 LAFGDHEGHVNLWA 340 (1118)
T ss_pred EEEecccCcEeeec
Confidence 99999999999996
|
|
| >KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=4.3e-05 Score=101.94 Aligned_cols=87 Identities=21% Similarity=0.437 Sum_probs=76.4
Q ss_pred cccccc-ccccccccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHH
Q 000268 1663 QDQYGV-QKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVT 1741 (1757)
Q Consensus 1663 ~~~~~~-~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~~~s~i~~~a~~l~~~~~ 1741 (1757)
.|.+++ ..++.....|+|+.+|+.|||+.||+.+|++..|+++++|..|+.+|..||..||..+..+++.|.++++...
T Consensus 580 kD~~gif~~pvd~~e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~yn~~dtv~~r~av~~~e~~~ 659 (1051)
T KOG0955|consen 580 KDSYGIFAEPVDPSELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEYNAKDTVYYRAAVRLRELIK 659 (1051)
T ss_pred ccccCceeeccChhhcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHhhccCeehHhhhHHHHhhhh
Confidence 344443 3446677899999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHhCCCC
Q 000268 1742 RTLSSLKA 1749 (1757)
Q Consensus 1742 ~~l~~~~~ 1749 (1757)
..+.+.+-
T Consensus 660 ~~~~~ark 667 (1051)
T KOG0955|consen 660 KDFRNARK 667 (1051)
T ss_pred hHHHhccc
Confidence 77665443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.002 Score=81.61 Aligned_cols=107 Identities=15% Similarity=0.182 Sum_probs=85.8
Q ss_pred EEECCCCCEEEEEc----CCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEec
Q 000268 249 AIFDRSGRYVITGS----DDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR 324 (1757)
Q Consensus 249 VaFSPDG~~LATGS----~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~ 324 (1757)
..|+|...++|+++ ..|.|.||- ++|++-+... ..-.+++++|+|..-.||.|-.-|.+.||...+.+.-....
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~ 98 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVE 98 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeeecc
Confidence 45788888887764 357888885 5666443322 12336679999999899999999999999988777666677
Q ss_pred CCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecC
Q 000268 325 GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360 (1757)
Q Consensus 325 gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~ 360 (1757)
.|..+|..+.||++|. .|+++..-|.|.+|...
T Consensus 99 th~a~i~~l~wS~~G~---~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 99 THPAPIQGLDWSHDGT---VLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CCCCCceeEEecCCCC---eEEEcCCCceeEEEEee
Confidence 8999999999999998 89999999999999876
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.029 Score=67.37 Aligned_cols=277 Identities=13% Similarity=0.123 Sum_probs=156.6
Q ss_pred ceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEE----------eCCCcEEEEecCCCCccceeecCCCCcc
Q 000268 307 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSS----------SDDGTCRIWDARYSQFSPRIYIPRPSDA 376 (1757)
Q Consensus 307 GtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSg----------s~DGtIrIWDl~tg~~~~~i~l~~~~~~ 376 (1757)
+.|.|+|..+++.+..+.. +..-.+..+|+++ .++++ -..-.|.+||..+-.....+.++.....
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk---~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGK---TIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSS---EEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCC---EEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 4799999999988877753 3344577899987 44432 2334699999999888887766542111
Q ss_pred ccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEee--CCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccC
Q 000268 377 VAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS--SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 454 (1757)
Q Consensus 377 ~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs--~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpd 454 (1757)
.. ......++++.||+++++.. -...|.|.|+... +.+..+.- . -|...-|.
T Consensus 92 ~~-------------~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~---------kvv~ei~~-P---GC~~iyP~ 145 (342)
T PF06433_consen 92 QV-------------VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAK---------KVVGEIDT-P---GCWLIYPS 145 (342)
T ss_dssp -B-------------S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTT---------EEEEEEEG-T---SEEEEEEE
T ss_pred ee-------------cccccceEEccCCcEEEEEccCCCCeEEEEECCCC---------ceeeeecC-C---CEEEEEec
Confidence 10 11233457888888877653 3456778887542 22222110 1 11112222
Q ss_pred ccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCce
Q 000268 455 AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQ 534 (1757)
Q Consensus 455 g~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~ 534 (1757)
+ +..|.+-+.||++.-..+....... ..-...+.
T Consensus 146 ~-------------------------~~~F~~lC~DGsl~~v~Ld~~Gk~~--~~~t~~F~------------------- 179 (342)
T PF06433_consen 146 G-------------------------NRGFSMLCGDGSLLTVTLDADGKEA--QKSTKVFD------------------- 179 (342)
T ss_dssp E-------------------------TTEEEEEETTSCEEEEEETSTSSEE--EEEEEESS-------------------
T ss_pred C-------------------------CCceEEEecCCceEEEEECCCCCEe--EeeccccC-------------------
Confidence 2 3568888999999888877422111 00001110
Q ss_pred eecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCce--EEEEeCC----------CCCeEEEEEecCCCcEEEEE-
Q 000268 535 RILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSL--VHSLTGH----------TESTYVLDVHPFNPRIAMSA- 601 (1757)
Q Consensus 535 ~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkl--l~~L~gH----------~~~VtsLafSPdd~~lLaSg- 601 (1757)
......+..-+++..+..++.-+.+|.|+-.|+..... ...+.-- .+.-.-+++++..+++.+..
T Consensus 180 --~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh 257 (342)
T PF06433_consen 180 --PDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMH 257 (342)
T ss_dssp --TTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEE
T ss_pred --CCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEec
Confidence 00111122334555565666677888888888765432 1222110 12233477777555555432
Q ss_pred -eCCC-------cEEEEeCCCCceEEEEeecCcceEEEEEcCCCC-EEEEE-eCCCeEEEEECCCCcccccc
Q 000268 602 -GYDG-------KTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGA-SIILS-DDVGQLYILNTGQGESQKDA 663 (1757)
Q Consensus 602 -s~DG-------~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk-~LAsg-s~DG~I~IWdl~tGe~~~~~ 663 (1757)
+.+| .|-++|+.+++.+..+.. ...+.+++++.|.+ +|++. ..++.|.|||..+|+.+..+
T Consensus 258 ~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 258 QGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp E--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred CCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 1122 377779999999999874 34688999999887 55444 45799999999999877644
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.047 Score=68.75 Aligned_cols=115 Identities=15% Similarity=0.233 Sum_probs=80.1
Q ss_pred CCCeeEEEEcC-CCCEEEE----EecCCe----EEEEECCCCceEE--E-EeCCCCCeEEEEEecCCCcEEEEEeCCCcE
Q 000268 540 PRGVNMIVWSL-DNRFVLA----AIMDCR----ICVWNAADGSLVH--S-LTGHTESTYVLDVHPFNPRIAMSAGYDGKT 607 (1757)
Q Consensus 540 ~~~VtsVafSP-DG~~LaS----Gs~DG~----I~IWDl~tgkll~--~-L~gH~~~VtsLafSPdd~~lLaSgs~DG~I 607 (1757)
.....++.||. +...+.+ .+.+|. .++|+....++-. . --.....|.+.+++| +...|+.|+.||.|
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSI 283 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeE
Confidence 34446667775 3333433 222333 4567765554322 1 124667799999999 66777789999999
Q ss_pred EEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 000268 608 IVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 657 (1757)
Q Consensus 608 rIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~tG 657 (1757)
.+||...+... +......++.++|+|+|..+++|+..|.|.+||++-+
T Consensus 284 iLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 284 ILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 99999776433 3334556788999999999999999999999998654
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.022 Score=70.39 Aligned_cols=307 Identities=13% Similarity=0.113 Sum_probs=160.7
Q ss_pred cCCCCEEEEE---------eCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCc
Q 000268 294 SSNNALVASA---------SNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQF 364 (1757)
Q Consensus 294 SPDg~lLASg---------S~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~ 364 (1757)
|||+++++.. +..+.+.|||+.+++....... ...+....|||++. .++... ++.|.++++.++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~---~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGK---YIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSST---EEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCC---eeEEEe-cCceEEEECCCCCe
Confidence 5788877664 2346799999999765444333 67788999999987 555544 57899999887732
Q ss_pred cceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeC-CceEEEecCCCCCCCCCCCCCcceeeecCCC
Q 000268 365 SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTLARVWNACKPNTDDSDQPNHEIDVLSGHE 443 (1757)
Q Consensus 365 ~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~-DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~ 443 (1757)
.++..........|....... ..--..-..+.|||||++||.... +..|..+.+-. .....
T Consensus 76 -~~lT~dg~~~i~nG~~dwvye--EEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~---------------~~~~~ 137 (353)
T PF00930_consen 76 -TQLTTDGEPGIYNGVPDWVYE--EEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPD---------------YSPPD 137 (353)
T ss_dssp -EESES--TTTEEESB--HHHH--HHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEE---------------ESSST
T ss_pred -EEeccccceeEEcCccceecc--ccccccccceEECCCCCEEEEEEECCcCCceEEeec---------------cCCcc
Confidence 222222211111111100000 000111346889999999987654 33344433310 00110
Q ss_pred ---CCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCC--eEEEEeCCCCCCCcccccccccccccC
Q 000268 444 ---NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG--SAIIWIPRSRRSHPKAARWTQAYHLKV 518 (1757)
Q Consensus 444 ---~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DG--tI~IWDl~t~k~~~~~~~w~~~~~l~~ 518 (1757)
..+..+.+--- |...- .+.|+|+.+++... .
T Consensus 138 ~~yp~~~~~~YPk~--------------------------------G~~np~v~l~v~~~~~~~~~~-----~------- 173 (353)
T PF00930_consen 138 SQYPEVESIRYPKA--------------------------------GDPNPRVSLFVVDLASGKTTE-----L------- 173 (353)
T ss_dssp ESS-EEEEEE--BT--------------------------------TS---EEEEEEEESSSTCCCE-----E-------
T ss_pred ccCCcccccccCCC--------------------------------CCcCCceEEEEEECCCCcEEE-----e-------
Confidence 12223332111 11111 35567776543210 0
Q ss_pred CCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecC-----CeEEEEECCCCceEEEEeC-CCCC---eEEEE
Q 000268 519 PPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD-----CRICVWNAADGSLVHSLTG-HTES---TYVLD 589 (1757)
Q Consensus 519 ~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~D-----G~I~IWDl~tgkll~~L~g-H~~~---VtsLa 589 (1757)
............+..+.|+++++.|+..-.+ ..+.++|..++.....+.. ..+. -..+.
T Consensus 174 ------------~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~ 241 (353)
T PF00930_consen 174 ------------DPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPH 241 (353)
T ss_dssp ---------------HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEE
T ss_pred ------------eeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccc
Confidence 0000112234558899999999955543322 2477888888765443322 1222 23455
Q ss_pred Ee-cCCCcEEEEEeCCCcEEE--EeCCCCceEEEEeecCcceEE-EEEcCCCCEEEE-EeC----CCeEEEEECC-CCcc
Q 000268 590 VH-PFNPRIAMSAGYDGKTIV--WDIWEGIPIRIYEISRFRLVD-GKFSPDGASIIL-SDD----VGQLYILNTG-QGES 659 (1757)
Q Consensus 590 fS-Pdd~~lLaSgs~DG~IrI--WDl~tg~~l~~l~~~~~~Vts-lafSPDGk~LAs-gs~----DG~I~IWdl~-tGe~ 659 (1757)
|. +++..+|.....||--.| .+...+. ...+..+...|.. +.|+++++.|.. +.. .-.|+..++. .|+.
T Consensus 242 ~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~ 320 (353)
T PF00930_consen 242 FLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP 320 (353)
T ss_dssp E-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE
T ss_pred cccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe
Confidence 54 667777777778886554 4554444 4466666777865 688999887764 443 2377778888 5544
Q ss_pred cc----ccc-cceeecCCCccEEEcc
Q 000268 660 QK----DAK-YDQFFLGDYRPLVQDT 680 (1757)
Q Consensus 660 ~~----~~~-~~~~fs~D~r~Li~d~ 680 (1757)
.. ... ....|+++++.++...
T Consensus 321 ~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 321 KCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp EESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred EeccCCCCCceEEEECCCCCEEEEEE
Confidence 22 111 3678999998876443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.087 Score=60.06 Aligned_cols=106 Identities=11% Similarity=0.025 Sum_probs=75.4
Q ss_pred CCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEE
Q 000268 254 SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAI 333 (1757)
Q Consensus 254 DG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsL 333 (1757)
-|++++.|...|.+++.++.+|.....+..-..-=......+++.+|..|+.|++.+..|..+..++...+...+...+-
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP 141 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP 141 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence 46789999999999999999998877766332222233456789999999999999999999998888877555544455
Q ss_pred EecCCCCceEEEEEEeCCCcEEEEecCCC
Q 000268 334 AFSPRPGSVYQLLSSSDDGTCRIWDARYS 362 (1757)
Q Consensus 334 afSPdg~~~~~LaSgs~DGtIrIWDl~tg 362 (1757)
+..|-.. .|..+...|.|.--...++
T Consensus 142 ~i~~g~~---sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 142 VIAPGDG---SLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred eecCCCc---eEEEEeccceEEEEccCCC
Confidence 5556322 4555555666655544443
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.04 Score=68.75 Aligned_cols=90 Identities=17% Similarity=0.217 Sum_probs=65.1
Q ss_pred eeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEE-EEEecCC----------------C-
Q 000268 534 QRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYV-LDVHPFN----------------P- 595 (1757)
Q Consensus 534 ~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~Vts-LafSPdd----------------~- 595 (1757)
..+......+.+|+.+|++++.|+...=|+|.++|+.++..++.++|-.+.-.. +...... .
T Consensus 301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l 380 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFAL 380 (415)
T ss_pred EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceE
Confidence 344555667999999999999999888899999999999999888876553111 1111101 1
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEEee
Q 000268 596 RIAMSAGYDGKTIVWDIWEGIPIRIYEI 623 (1757)
Q Consensus 596 ~lLaSgs~DG~IrIWDl~tg~~l~~l~~ 623 (1757)
.+++-+-.-|.|.||.+..|..+..+..
T Consensus 381 ~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 381 FLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 1344456789999999999998887764
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.011 Score=76.18 Aligned_cols=221 Identities=10% Similarity=0.067 Sum_probs=133.0
Q ss_pred EEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCc-eEEEEecCCCCceEEEEEEeCCCc-----EEEEecCCCCcc
Q 000268 292 AVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAA-VTAIAFSPRPGSVYQLLSSSDDGT-----CRIWDARYSQFS 365 (1757)
Q Consensus 292 afSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~-VtsLafSPdg~~~~~LaSgs~DGt-----IrIWDl~tg~~~ 365 (1757)
+|++.+..+|.|+.+|.|.+.+ ..-+.+..++.+... |..+- .-++. .+|++.+.|+. |+||+++.-...
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~-~~~~~--~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLY-ILNKQ--NFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhh-cccCc--eEEEEEeecCCCCceEEEEecccccCCC
Confidence 3678888999999999887776 233444777777766 44443 33332 27777777654 899998754211
Q ss_pred c--eeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCC
Q 000268 366 P--RIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE 443 (1757)
Q Consensus 366 ~--~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~ 443 (1757)
. ... +...............+.+++++.+-+.+|+|-.+|.|..+.-.-. ...+........-.
T Consensus 106 ~sP~c~---------~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~-----RDrgsr~~~~~~~~ 171 (933)
T KOG2114|consen 106 NSPQCL---------YEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDIL-----RDRGSRQDYSHRGK 171 (933)
T ss_pred CCccee---------eeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcch-----hccccceeeeccCC
Confidence 1 000 0000000011123556889999999999999999999998854210 01111222233345
Q ss_pred CCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCC
Q 000268 444 NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPM 523 (1757)
Q Consensus 444 ~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~ 523 (1757)
.+|+.+.+..++ ..++-...-..|.+|.+.. +
T Consensus 172 ~pITgL~~~~d~--------------------------~s~lFv~Tt~~V~~y~l~g-r--------------------- 203 (933)
T KOG2114|consen 172 EPITGLALRSDG--------------------------KSVLFVATTEQVMLYSLSG-R--------------------- 203 (933)
T ss_pred CCceeeEEecCC--------------------------ceeEEEEecceeEEEEecC-C---------------------
Confidence 689999998765 2212223344677777662 1
Q ss_pred CCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEe-CCCCCe
Q 000268 524 PPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT-GHTEST 585 (1757)
Q Consensus 524 ~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~-gH~~~V 585 (1757)
+.....+..+...++|..+++....+++|+. ..|.+|+....++-..|. ||....
T Consensus 204 ------~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 204 ------TPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKKEM 259 (933)
T ss_pred ------CcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeEEE
Confidence 1112224556677888888876664665554 469999988766666776 665543
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.13 Score=65.01 Aligned_cols=106 Identities=13% Similarity=0.100 Sum_probs=62.7
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCC-CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE
Q 000268 540 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH-TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 618 (1757)
Q Consensus 540 ~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH-~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l 618 (1757)
.+++..+++||+|++||.-..+|.+.|....-.+.+..+... ......|+|+- +..+++.- ...|.+...
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG-~dav~l~~--~~~l~lvg~------ 286 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCG-NDAVVLSW--EDELLLVGP------ 286 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEEC-CCcEEEEe--CCEEEEECC------
Confidence 457999999999999999999999999987666666665543 33455666754 22222211 223333321
Q ss_pred EEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccccc
Q 000268 619 RIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDA 663 (1757)
Q Consensus 619 ~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~tGe~~~~~ 663 (1757)
.. ..+.|.-++..++..-.|| |+|+.-..-+.+..+
T Consensus 287 -----~~---~~~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~V 322 (410)
T PF04841_consen 287 -----DG---DSISFWYDGPVILVSEIDG-VRIITSTSHEFLQRV 322 (410)
T ss_pred -----CC---CceEEeccCceEEeccCCc-eEEEeCCceEEEEEC
Confidence 11 1234444555455555555 777765555544433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.016 Score=74.77 Aligned_cols=181 Identities=14% Similarity=0.193 Sum_probs=118.6
Q ss_pred CEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCC-eEEEEEcCCCCEEEEEeCCc-----eEEEEECCCC-
Q 000268 245 AVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD-ITDLAVSSNNALVASASNDC-----IIRVWRLPDG- 317 (1757)
Q Consensus 245 ~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~-VtsLafSPDg~lLASgS~DG-----tIrVWDl~tg- 317 (1757)
.|.| |++.+..+|.|+.+|.|.+.+- .-+.++.++.+... |..+-...+..+|++.+.|+ .|+||+++.-
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 4554 6788999999999999888874 34555777777777 44444443446888877664 5999998632
Q ss_pred -----CceE--EecC-----CCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCC
Q 000268 318 -----LPIS--VLRG-----HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS 385 (1757)
Q Consensus 318 -----~~l~--~l~g-----H~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~ 385 (1757)
.++. .+.. ...++.+++.+.+-. .+|+|-.+|.|.++.-+- .+..- ...
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~---~Iv~Gf~nG~V~~~~GDi---~RDrg-------------sr~ 164 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK---TIVCGFTNGLVICYKGDI---LRDRG-------------SRQ 164 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc---EEEEEecCcEEEEEcCcc---hhccc-------------cce
Confidence 2331 1112 356788999998865 899999999999884321 11100 001
Q ss_pred CCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCc
Q 000268 386 SSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCA 455 (1757)
Q Consensus 386 ~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg 455 (1757)
........+|+.+++..++..++.......|.+|.+.. ++ .....+..|...+.|..+++..
T Consensus 165 ~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g-------r~-p~~~~ld~~G~~lnCss~~~~t 226 (933)
T KOG2114|consen 165 DYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSG-------RT-PSLKVLDNNGISLNCSSFSDGT 226 (933)
T ss_pred eeeccCCCCceeeEEecCCceeEEEEecceeEEEEecC-------CC-cceeeeccCCccceeeecCCCC
Confidence 11223567899999999988733333456789998852 11 2344567778888888888653
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.054 Score=66.27 Aligned_cols=108 Identities=13% Similarity=0.050 Sum_probs=56.4
Q ss_pred ccceeEEEEccCCCCEEE-----EEECCCCCEEEEEcC---CceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 000268 231 QKMQNIKRVRGHRNAVYC-----AIFDRSGRYVITGSD---DRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVAS 302 (1757)
Q Consensus 231 ~~~k~l~tL~GH~~~V~~-----VaFSPDG~~LATGS~---DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLAS 302 (1757)
.++..+.+|..+.+.... =+|.+||+.|+.+++ ...+.+.|+.+++..+--.+.........++++++.|+-
T Consensus 18 ~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Y 97 (386)
T PF14583_consen 18 DTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYY 97 (386)
T ss_dssp TT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEE
T ss_pred CCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEE
Confidence 445556666544332222 247789987776655 457788899998766544432233335667788888876
Q ss_pred EeCCceEEEEECCCCCceEEecCCCCceEEEEecCC
Q 000268 303 ASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPR 338 (1757)
Q Consensus 303 gS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPd 338 (1757)
......|+-.|+.+.+....+......+-...|..+
T Consensus 98 v~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n 133 (386)
T PF14583_consen 98 VKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVAN 133 (386)
T ss_dssp EETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-
T ss_pred EECCCeEEEEECCcCcEEEEEECCcccccccceeeC
Confidence 656678999999998776666666666655666543
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.035 Score=70.69 Aligned_cols=123 Identities=11% Similarity=0.102 Sum_probs=90.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceE-EecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCC
Q 000268 284 HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS-VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 362 (1757)
Q Consensus 284 H~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~-~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg 362 (1757)
|...|.--++...+++|+.|+.-|.|.+|+-..+.... ...+..+.+..+..+++.. ++|.|+..|.|.++-+..+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~---lvAagt~~g~V~v~ql~~~ 108 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEY---LVAAGTASGRVSVFQLNKE 108 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhH---hhhhhcCCceEEeehhhcc
Confidence 44556666677789999999999999999976665433 2233556666777888765 7888899999999988764
Q ss_pred CccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCC
Q 000268 363 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACK 423 (1757)
Q Consensus 363 ~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t 423 (1757)
.......+ ......|...|+|++|++++..+++|...|.|.+-.+.+
T Consensus 109 ~p~~~~~~--------------t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 109 LPRDLDYV--------------TPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCCcceee--------------ccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 33222221 111223788999999999999999999999998887753
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0078 Score=75.51 Aligned_cols=118 Identities=15% Similarity=0.102 Sum_probs=84.4
Q ss_pred EEEEEECC-CCCEEEEE----cCCc----eEEEEecCCCeEEE--EE-ecCCCCeEEEEEcCCCCEEEEEeCCceEEEEE
Q 000268 246 VYCAIFDR-SGRYVITG----SDDR----LVKIWSMETAYCLA--SC-RGHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1757)
Q Consensus 246 V~~VaFSP-DG~~LATG----S~DG----tIkIWDl~tg~~l~--tL-~gH~~~VtsLafSPDg~lLASgS~DGtIrVWD 313 (1757)
..++.||- +...+.|. +.+| .-++|++..++... .. -.....|.+++++|+...|+.|+.||+|.+||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 36677776 34444442 3344 24566665443221 11 14678999999999999999999999999999
Q ss_pred CCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCcccee
Q 000268 314 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRI 368 (1757)
Q Consensus 314 l~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i 368 (1757)
...+.. .+....-.++.++|+|+|. .+++|+..|.+.+||+.-......+
T Consensus 288 ~~~~~t--~~~ka~~~P~~iaWHp~ga---i~~V~s~qGelQ~FD~ALspi~~qL 337 (545)
T PF11768_consen 288 TTRGVT--LLAKAEFIPTLIAWHPDGA---IFVVGSEQGELQCFDMALSPIKMQL 337 (545)
T ss_pred cCCCee--eeeeecccceEEEEcCCCc---EEEEEcCCceEEEEEeecCccceee
Confidence 876633 3334556788999999997 8999999999999999766544443
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.056 Score=67.56 Aligned_cols=305 Identities=15% Similarity=0.138 Sum_probs=144.3
Q ss_pred CEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCC--------
Q 000268 245 AVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPD-------- 316 (1757)
Q Consensus 245 ~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~t-------- 316 (1757)
.|+++.|+++..-||+|...|.|.||.+...+... ......-..+.|.+- ...++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 58999999999999999999999999886543221 000011111111110 00011112222211
Q ss_pred C-CceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcce
Q 000268 317 G-LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 395 (1757)
Q Consensus 317 g-~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V 395 (1757)
| .+...+....+.|++++.|.-| +++.|..+|.+.|.|++....+....+.. ..........+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG----Fvaigy~~G~l~viD~RGPavI~~~~i~~------------~~~~~~~~~~v 138 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG----FVAIGYESGSLVVIDLRGPAVIYNENIRE------------SFLSKSSSSYV 138 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS----EEEEEETTSEEEEEETTTTEEEEEEEGGG--------------T-SS----E
T ss_pred ccCchhheeccCCcEeEEecCCCc----EEEEEecCCcEEEEECCCCeEEeeccccc------------cccccccccCe
Confidence 1 3444556668999999998766 89999999999999998877666543321 01112344567
Q ss_pred EEEEECC-----CC---CEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCC
Q 000268 396 FCCAFNA-----NG---TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSK 467 (1757)
Q Consensus 396 ~slafSp-----dG---~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~ 467 (1757)
+++.|+- |+ -++++|+..|.+.+|.+.-. .+. -..+.|...
T Consensus 139 t~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~---------------~~g---~f~v~~~~~------------- 187 (395)
T PF08596_consen 139 TSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPS---------------SNG---RFSVQFAGA------------- 187 (395)
T ss_dssp EEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE----------------GGG----EEEEEEEE-------------
T ss_pred eEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecC---------------CCC---ceEEEEeec-------------
Confidence 7787762 33 47888999999999987210 000 011111100
Q ss_pred CCCCCcccccccCCCcEEEEcCCC--eEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeE
Q 000268 468 EDSTPKFKNSWFCHDNIVTCSRDG--SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNM 545 (1757)
Q Consensus 468 ~~~~~~~~~~~~~~~~LvSgS~DG--tI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~Vts 545 (1757)
. ....+. .|...+..++........-.. -......+
T Consensus 188 ----------------~-~~~~~~i~~I~~i~~~~G~~a~At~~~~~-----------------------~l~~g~~i-- 225 (395)
T PF08596_consen 188 ----------------T-TNHDSPILSIIPINADTGESALATISAMQ-----------------------GLSKGISI-- 225 (395)
T ss_dssp ----------------E---SS----EEEEEETTT--B-B-BHHHHH-----------------------GGGGT-----
T ss_pred ----------------c-ccCCCceEEEEEEECCCCCcccCchhHhh-----------------------ccccCCCc--
Confidence 0 000011 122223332221000000000 00000011
Q ss_pred EEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEec----CCCcEEEEEeCCCcEEEEeCCCCceEEEE
Q 000268 546 IVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHP----FNPRIAMSAGYDGKTIVWDIWEGIPIRIY 621 (1757)
Q Consensus 546 VafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSP----dd~~lLaSgs~DG~IrIWDl~tg~~l~~l 621 (1757)
..++++ ..+..|+|+...+.+..+......-....+.+-+ ..+..|++-..+|.|+++.+-.-+.+..+
T Consensus 226 ------~g~vVv-vSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~ 298 (395)
T PF08596_consen 226 ------PGYVVV-VSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSV 298 (395)
T ss_dssp -------EEEEE-E-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEE
T ss_pred ------CcEEEE-EcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcc
Confidence 113333 3456899999988887776552222233344421 14567788889999999999998888877
Q ss_pred eecC----cceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 000268 622 EISR----FRLVDGKFSPDGASIILSDDVGQLYILNT 654 (1757)
Q Consensus 622 ~~~~----~~VtslafSPDGk~LAsgs~DG~I~IWdl 654 (1757)
.... ..+....|+++|..++..+. ..+.++.+
T Consensus 299 ~l~~~~d~~~~~~ssis~~Gdi~~~~gp-sE~~l~sv 334 (395)
T PF08596_consen 299 SLPPPLDSRRLSSSSISRNGDIFYWTGP-SEIQLFSV 334 (395)
T ss_dssp E-SS---HHHHTT-EE-TTS-EEEE-SS-SEEEEEEE
T ss_pred cCCCccccccccccEECCCCCEEEEeCc-ccEEEEEE
Confidence 6432 23445688999997776644 34444443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00031 Score=90.37 Aligned_cols=78 Identities=14% Similarity=0.223 Sum_probs=68.6
Q ss_pred ccccccccccccccccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHH
Q 000268 1661 RVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSD 1738 (1757)
Q Consensus 1661 ~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~~~s~i~~~a~~l~~ 1738 (1757)
+....+.+...+....+|+||.+|+.||||+|+.++|.+.-|-+.++|+.|+++||.||++||...+..++.=..+..
T Consensus 300 ~~~~s~~~~~kvs~~~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n~ee~~~~~~~~vv~~ 377 (720)
T KOG1472|consen 300 RTEHSTPFLEKVSKEDAPNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYNSEESHGLIEFAVIMN 377 (720)
T ss_pred ccccccccccCCChhhCcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhccccchhhhhhhhhhc
Confidence 467778888888888999999999999999999999999999999999999999999999999988766655444433
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00048 Score=85.48 Aligned_cols=198 Identities=13% Similarity=0.179 Sum_probs=126.5
Q ss_pred CEEEEEECCCC--CEEEEEcCCceEEEEecCCCeE--EEEEecCCCCeEEEEEcC-CCCEEEEEe----CCceEEEEECC
Q 000268 245 AVYCAIFDRSG--RYVITGSDDRLVKIWSMETAYC--LASCRGHEGDITDLAVSS-NNALVASAS----NDCIIRVWRLP 315 (1757)
Q Consensus 245 ~V~~VaFSPDG--~~LATGS~DGtIkIWDl~tg~~--l~tL~gH~~~VtsLafSP-Dg~lLASgS----~DGtIrVWDl~ 315 (1757)
.+.|+++.-+. -.++.|..+|.|-+-.+....- .....+|....++++|++ |...||+|- .|..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 45566654433 4688899999999988754322 223457888999999998 455777773 35779999998
Q ss_pred CC--Cce--EEecC-CCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCC
Q 000268 316 DG--LPI--SVLRG-HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGP 390 (1757)
Q Consensus 316 tg--~~l--~~l~g-H~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~ 390 (1757)
++ -+. ..+.+ -.....+++|..+.+ ++++|.....+.++|++........ -
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~k---lvlaGm~sr~~~ifdlRqs~~~~~s---------------------v 193 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTK---LVLAGMTSRSVHIFDLRQSLDSVSS---------------------V 193 (783)
T ss_pred cccCCCccccccccccccCccccccccCcc---hhhcccccchhhhhhhhhhhhhhhh---------------------h
Confidence 77 221 12222 334456788886665 7888888889999998743211110 0
Q ss_pred CCcceEEEEECC-CCCEEEEeeCCceEEEecC-CCCCCCCCCCCCcceeeecCC----CCCceEEEEccCcccccccccc
Q 000268 391 QSHQIFCCAFNA-NGTVFVTGSSDTLARVWNA-CKPNTDDSDQPNHEIDVLSGH----ENDVNYVQFSGCAVASRFSLAD 464 (1757)
Q Consensus 391 ~~~~V~slafSp-dG~~LasGs~DG~IrVWDl-~t~~~~~s~~~~~~i~~l~gH----~~~V~sLafSpdg~~s~~~~~~ 464 (1757)
.+..+..+.+.| .+.++++-. ||.|.+||. ++- ...+..+... ...+..++|.|..
T Consensus 194 nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rni--------enpl~~i~~~~N~~~~~l~~~aycPtr--------- 255 (783)
T KOG1008|consen 194 NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNI--------ENPLQIILRNENKKPKQLFALAYCPTR--------- 255 (783)
T ss_pred hhhhcccceecCCCCCceeccc-cCceeeccchhhh--------ccHHHHHhhCCCCcccceeeEEeccCC---------
Confidence 122356677888 777777665 999999994 221 1122222222 2248889998864
Q ss_pred CCCCCCCCcccccccCCCcEEEEcC-CCeEEEEeCCC
Q 000268 465 SSKEDSTPKFKNSWFCHDNIVTCSR-DGSAIIWIPRS 500 (1757)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~LvSgS~-DGtI~IWDl~t 500 (1757)
...+++... .++|+++++..
T Consensus 256 ----------------tglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 256 ----------------TGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ----------------cchhhhhccCcceEEEecccc
Confidence 245666555 57899998874
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.22 Score=64.93 Aligned_cols=56 Identities=20% Similarity=0.254 Sum_probs=39.3
Q ss_pred CcEEEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc
Q 000268 605 GKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 661 (1757)
Q Consensus 605 G~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~tGe~~~ 661 (1757)
|.|.-||+.+|+.+....... +...-.+.-.|.++++++.+|.++.+|..+|+.+-
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~-p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw 496 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDF-PLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELW 496 (527)
T ss_pred eeEEEEeCCCCceeeEecCCC-CCCCcceEECCcEEEEECCCCeEEEEECCCCCEeE
Confidence 468888999999888776322 21111122355677778889999999999998764
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.94 E-value=2.7 Score=56.24 Aligned_cols=110 Identities=15% Similarity=0.189 Sum_probs=80.1
Q ss_pred eeEEEEcCC-CCEEEEEec----------CCeEEEEECCCCceEEEEeCC--CCCeEEEEEecCCCcEEEEEeCCCcEEE
Q 000268 543 VNMIVWSLD-NRFVLAAIM----------DCRICVWNAADGSLVHSLTGH--TESTYVLDVHPFNPRIAMSAGYDGKTIV 609 (1757)
Q Consensus 543 VtsVafSPD-G~~LaSGs~----------DG~I~IWDl~tgkll~~L~gH--~~~VtsLafSPdd~~lLaSgs~DG~IrI 609 (1757)
|.++.|..| +.++++|+. .|.|.||....++.+.....+ .+.|.++.. ++++++| +-...|++
T Consensus 777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~--fngkllA--~In~~vrL 852 (1096)
T KOG1897|consen 777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE--FNGKLLA--GINQSVRL 852 (1096)
T ss_pred eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh--hCCeEEE--ecCcEEEE
Confidence 455567777 778888763 578888888774444433322 344555543 4678875 45678999
Q ss_pred EeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 000268 610 WDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 656 (1757)
Q Consensus 610 WDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~t 656 (1757)
|++.+++.++.-..+..++..+...-.|..+++|+--+.+.+.....
T Consensus 853 ye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~ 899 (1096)
T KOG1897|consen 853 YEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKG 899 (1096)
T ss_pred EEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEec
Confidence 99999988887777888999999999999999999888777765543
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.86 Score=57.11 Aligned_cols=286 Identities=14% Similarity=0.074 Sum_probs=170.7
Q ss_pred EEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe-CCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEE
Q 000268 267 VKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS-NDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQL 345 (1757)
Q Consensus 267 IkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS-~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~L 345 (1757)
+.+++..+......+..+. ....++..+++..+.... ....+.+.+............-...-..+++++.+. ..+
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~--~vy 89 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGN--KVY 89 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCC--eEE
Confidence 6777776666665555333 566778888885444332 222455555442221111111113345678888776 245
Q ss_pred EEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeC---CceEEEecCC
Q 000268 346 LSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS---DTLARVWNAC 422 (1757)
Q Consensus 346 aSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~---DG~IrVWDl~ 422 (1757)
++...+..|.+.|..+......+.. ......+++++++..+.++.. ++.+.+.|..
T Consensus 90 v~~~~~~~v~vid~~~~~~~~~~~v---------------------G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~ 148 (381)
T COG3391 90 VTTGDSNTVSVIDTATNTVLGSIPV---------------------GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAA 148 (381)
T ss_pred EecCCCCeEEEEcCcccceeeEeee---------------------ccCCceEEECCCCCEEEEEecccCCceEEEEeCC
Confidence 5566678899999776665544422 114668999999987776655 6788888876
Q ss_pred CCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCC
Q 000268 423 KPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR 502 (1757)
Q Consensus 423 t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k 502 (1757)
+.. .+.....-..+ ..+++.|++ ...+++-..++.|.+.|..+..
T Consensus 149 t~~---------~~~~~~vG~~P-~~~a~~p~g-------------------------~~vyv~~~~~~~v~vi~~~~~~ 193 (381)
T COG3391 149 TNK---------VTATIPVGNTP-TGVAVDPDG-------------------------NKVYVTNSDDNTVSVIDTSGNS 193 (381)
T ss_pred CCe---------EEEEEecCCCc-ceEEECCCC-------------------------CeEEEEecCCCeEEEEeCCCcc
Confidence 532 22222222223 788888887 1245555688999999976522
Q ss_pred CCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecC---CeEEEEECCCCceEEE-E
Q 000268 503 SHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAADGSLVHS-L 578 (1757)
Q Consensus 503 ~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~D---G~I~IWDl~tgkll~~-L 578 (1757)
... ...............++++++|.++.+.... +.+.+.|..++..... +
T Consensus 194 v~~-------------------------~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~ 248 (381)
T COG3391 194 VVR-------------------------GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL 248 (381)
T ss_pred eec-------------------------cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc
Confidence 100 0000011122334568899999977765544 5899999988887765 2
Q ss_pred eCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCc---ceEEEEEcCC
Q 000268 579 TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRF---RLVDGKFSPD 636 (1757)
Q Consensus 579 ~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~---~VtslafSPD 636 (1757)
..-......+.++|++..+.+.-+..+.+.+-|..+......+..+.. .+..+++.+.
T Consensus 249 ~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 249 PVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred ccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 211114567889995554444445568899999988888777654433 3445555544
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.24 Score=58.72 Aligned_cols=143 Identities=19% Similarity=0.186 Sum_probs=86.1
Q ss_pred CCCCCEEEEEcCCceEEEEecC-CCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEe-------
Q 000268 252 DRSGRYVITGSDDRLVKIWSME-TAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL------- 323 (1757)
Q Consensus 252 SPDG~~LATGS~DGtIkIWDl~-tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l------- 323 (1757)
...++.|+.|+.+| |.++++. ......... ...|..|...++-+.|++-+ |+.|.++++..-......
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence 34678999999999 8999983 333333332 33499999999877777665 599999998765433311
Q ss_pred -------cCCCCceEEEE-ecCCCCceEEEEEEeCCCcEEEEecCCCC-----ccceeecCCCCccccCCCCCCCCCCCC
Q 000268 324 -------RGHTAAVTAIA-FSPRPGSVYQLLSSSDDGTCRIWDARYSQ-----FSPRIYIPRPSDAVAGRNMAPSSSAGP 390 (1757)
Q Consensus 324 -------~gH~~~VtsLa-fSPdg~~~~~LaSgs~DGtIrIWDl~tg~-----~~~~i~l~~~~~~~~g~~~~~~~~~~~ 390 (1757)
......+...+ -..... ...|+++ ....|.+|...... ....+.
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~-~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~--------------------- 136 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEG-SRRLCVA-VKKKILIYEWNDPRNSFSKLLKEIS--------------------- 136 (275)
T ss_pred cccccccccccCCeeEEeecccccc-ceEEEEE-ECCEEEEEEEECCcccccceeEEEE---------------------
Confidence 11223344444 112221 1244444 44588888776531 222222
Q ss_pred CCcceEEEEECCCCCEEEEeeCCceEEEecCCCC
Q 000268 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWNACKP 424 (1757)
Q Consensus 391 ~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~ 424 (1757)
....+.+++|. +..|++|..++ ..+.|+.++
T Consensus 137 lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~ 167 (275)
T PF00780_consen 137 LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTG 167 (275)
T ss_pred cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCC
Confidence 23457888888 55677776554 778888653
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.036 Score=73.68 Aligned_cols=141 Identities=11% Similarity=0.118 Sum_probs=96.2
Q ss_pred CEEEEE-cCCceEEEEecCCCeEEEEEecCCCC-eEEEEEcC-----CCCEEEEEeCCceEEEEECCCC-CceEEec---
Q 000268 256 RYVITG-SDDRLVKIWSMETAYCLASCRGHEGD-ITDLAVSS-----NNALVASASNDCIIRVWRLPDG-LPISVLR--- 324 (1757)
Q Consensus 256 ~~LATG-S~DGtIkIWDl~tg~~l~tL~gH~~~-VtsLafSP-----Dg~lLASgS~DGtIrVWDl~tg-~~l~~l~--- 324 (1757)
.+|+.. .....|+-.|+..|+.+..+..|... |..++=.. +..-.+.|-.+..|..||.+-. ..+..-.
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~ 573 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ 573 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence 344433 34578999999999999999977654 55554321 1234456777888999998743 2221111
Q ss_pred -CCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCC
Q 000268 325 -GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN 403 (1757)
Q Consensus 325 -gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpd 403 (1757)
......+|++-+.+| +||+|+.+|.|++||- .|... ...+.+.+.+|.+|..+.|
T Consensus 574 Y~~~~~Fs~~aTt~~G----~iavgs~~G~IRLyd~-~g~~A-------------------KT~lp~lG~pI~~iDvt~D 629 (794)
T PF08553_consen 574 YSSKNNFSCFATTEDG----YIAVGSNKGDIRLYDR-LGKRA-------------------KTALPGLGDPIIGIDVTAD 629 (794)
T ss_pred cccCCCceEEEecCCc----eEEEEeCCCcEEeecc-cchhh-------------------hhcCCCCCCCeeEEEecCC
Confidence 133567888888887 7999999999999983 22211 1122345678999999999
Q ss_pred CCEEEEeeCCceEEEecC
Q 000268 404 GTVFVTGSSDTLARVWNA 421 (1757)
Q Consensus 404 G~~LasGs~DG~IrVWDl 421 (1757)
|++|++.| +..+.++++
T Consensus 630 GkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 630 GKWILATC-KTYLLLIDT 646 (794)
T ss_pred CcEEEEee-cceEEEEEE
Confidence 99998776 566777776
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.079 Score=66.86 Aligned_cols=208 Identities=16% Similarity=0.097 Sum_probs=116.0
Q ss_pred ceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCC-CcEEEEecCCCCccceeecCCCCccccCCCCCCC
Q 000268 307 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD-GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS 385 (1757)
Q Consensus 307 GtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~D-GtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~ 385 (1757)
..+.+-|.. |.....+..-...+..-+|+|++....++...... ..+.++++.+++.......
T Consensus 173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~--------------- 236 (425)
T COG0823 173 YELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF--------------- 236 (425)
T ss_pred ceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc---------------
Confidence 344444543 65566666566778888999998754344333333 4689999998875444321
Q ss_pred CCCCCCCcceEEEEECCCCCEEEEee-CCce--EEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccc
Q 000268 386 SSAGPQSHQIFCCAFNANGTVFVTGS-SDTL--ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSL 462 (1757)
Q Consensus 386 ~~~~~~~~~V~slafSpdG~~LasGs-~DG~--IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~ 462 (1757)
.+.-..-+|+|||+.|+... .||. |.++|+.... +..+..-.+.-..-.|+|+|
T Consensus 237 ------~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~----------~~~Lt~~~gi~~~Ps~spdG------- 293 (425)
T COG0823 237 ------NGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN----------LPRLTNGFGINTSPSWSPDG------- 293 (425)
T ss_pred ------CCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc----------ceecccCCccccCccCCCCC-------
Confidence 11223457999998776554 4554 5566665422 11222222222356677876
Q ss_pred ccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCC
Q 000268 463 ADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRG 542 (1757)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~ 542 (1757)
...+++.+..|.-.||-..- .+....++......
T Consensus 294 ------------------~~ivf~Sdr~G~p~I~~~~~----------------------------~g~~~~riT~~~~~ 327 (425)
T COG0823 294 ------------------SKIVFTSDRGGRPQIYLYDL----------------------------EGSQVTRLTFSGGG 327 (425)
T ss_pred ------------------CEEEEEeCCCCCcceEEECC----------------------------CCCceeEeeccCCC
Confidence 23455666677766664431 01112223333333
Q ss_pred eeEEEEcCCCCEEEEEecC-Ce--EEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEE
Q 000268 543 VNMIVWSLDNRFVLAAIMD-CR--ICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMS 600 (1757)
Q Consensus 543 VtsVafSPDG~~LaSGs~D-G~--I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaS 600 (1757)
-..-.|||||++|+..+.. |. |.+.|+.++.-++.+. +......-.|.|++..++.+
T Consensus 328 ~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 328 NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFS 387 (425)
T ss_pred CcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEe
Confidence 3366899999999887643 43 7777776665444443 22223445666733333333
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.11 Score=66.03 Aligned_cols=147 Identities=15% Similarity=0.108 Sum_probs=82.2
Q ss_pred EEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCC
Q 000268 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPD 316 (1757)
Q Consensus 237 ~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~t 316 (1757)
+.+.........+.++|+|++++.+ .||.-.|+.....+.... +.-..++|.+.+ .+|+-...++|.|+.--+
T Consensus 26 k~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~ 98 (443)
T PF04053_consen 26 KELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFK 98 (443)
T ss_dssp EEEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTE
T ss_pred ccCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCc
Confidence 3344445557889999999999985 567788887554444332 334567898855 566666688899964323
Q ss_pred CCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceE
Q 000268 317 GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF 396 (1757)
Q Consensus 317 g~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~ 396 (1757)
......+.-. ..+..|-. |. +|+..+ ++.|.+||+.+++.+.++.+ ..|.
T Consensus 99 ~~~~k~i~~~-~~~~~If~---G~---LL~~~~-~~~i~~yDw~~~~~i~~i~v----------------------~~vk 148 (443)
T PF04053_consen 99 NEVVKSIKLP-FSVEKIFG---GN---LLGVKS-SDFICFYDWETGKLIRRIDV----------------------SAVK 148 (443)
T ss_dssp E-TT-----S-S-EEEEE----SS---SEEEEE-TTEEEEE-TTT--EEEEESS-----------------------E-E
T ss_pred cccceEEcCC-cccceEEc---Cc---EEEEEC-CCCEEEEEhhHcceeeEEec----------------------CCCc
Confidence 3332333211 22333333 43 455544 44899999999998888742 2378
Q ss_pred EEEECCCCCEEEEeeCCceEEEecC
Q 000268 397 CCAFNANGTVFVTGSSDTLARVWNA 421 (1757)
Q Consensus 397 slafSpdG~~LasGs~DG~IrVWDl 421 (1757)
.+.|+++|.++|..+.+ .+.|++.
T Consensus 149 ~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 149 YVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp EEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred EEEEECCCCEEEEEeCC-eEEEEEe
Confidence 99999999999988755 5777765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.34 Score=56.83 Aligned_cols=205 Identities=13% Similarity=0.118 Sum_probs=112.4
Q ss_pred CcceEEEEECCCC-CEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCC-CCCceEEEEccCccccccccccCCCCC
Q 000268 392 SHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH-ENDVNYVQFSGCAVASRFSLADSSKED 469 (1757)
Q Consensus 392 ~~~V~slafSpdG-~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH-~~~V~sLafSpdg~~s~~~~~~~~~~~ 469 (1757)
...+..++|+|+. .++++....+.|..++.. ++.+..+.-. .+....|++..++
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~----------G~vlr~i~l~g~~D~EgI~y~g~~-------------- 76 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD----------GKVLRRIPLDGFGDYEGITYLGNG-------------- 76 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT------------EEEEEE-SS-SSEEEEEE-STT--------------
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCC----------CCEEEEEeCCCCCCceeEEEECCC--------------
Confidence 3458999999975 566777778888877763 2233333222 3566777777654
Q ss_pred CCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEc
Q 000268 470 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWS 549 (1757)
Q Consensus 470 ~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafS 549 (1757)
.++++--.++.+.++++........... ...+.+.. ...+..++-.++|+
T Consensus 77 ------------~~vl~~Er~~~L~~~~~~~~~~~~~~~~-~~~~~l~~-----------------~~~~N~G~EGla~D 126 (248)
T PF06977_consen 77 ------------RYVLSEERDQRLYIFTIDDDTTSLDRAD-VQKISLGF-----------------PNKGNKGFEGLAYD 126 (248)
T ss_dssp ------------EEEEEETTTTEEEEEEE----TT--EEE-EEEEE--------------------S---SS--EEEEEE
T ss_pred ------------EEEEEEcCCCcEEEEEEeccccccchhh-ceEEeccc-----------------ccCCCcceEEEEEc
Confidence 3445555689999988854221100000 00111110 01245678999999
Q ss_pred CCCCEEEEEecCCeEEEEECCC---CceEEEE--------eCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE
Q 000268 550 LDNRFVLAAIMDCRICVWNAAD---GSLVHSL--------TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 618 (1757)
Q Consensus 550 PDG~~LaSGs~DG~I~IWDl~t---gkll~~L--------~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l 618 (1757)
+.+..|+++-...-..||.+.. +..+... ......+.+++++|..+.+++.......|.++| .+|+.+
T Consensus 127 ~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~ 205 (248)
T PF06977_consen 127 PKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVV 205 (248)
T ss_dssp TTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EE
T ss_pred CCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEE
Confidence 9988888887776666666643 2222211 123345789999998888888888899999999 588887
Q ss_pred EEEeecC---------cceEEEEEcCCCCEEEEEeCCCeEEEE
Q 000268 619 RIYEISR---------FRLVDGKFSPDGASIILSDDVGQLYIL 652 (1757)
Q Consensus 619 ~~l~~~~---------~~VtslafSPDGk~LAsgs~DG~I~IW 652 (1757)
..+.-.. ...-.|+|.++|++.+++ .-+..++|
T Consensus 206 ~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 206 SSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp EEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred EEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 7665332 135578999999766665 44555554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.73 E-value=3.6 Score=55.78 Aligned_cols=112 Identities=9% Similarity=-0.017 Sum_probs=74.2
Q ss_pred CCEEEEEcCCceEEEEecCCCeEEEEEecCCCC--------eEEEEEc----------------CCCCEEEEEeCCceEE
Q 000268 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHEGD--------ITDLAVS----------------SNNALVASASNDCIIR 310 (1757)
Q Consensus 255 G~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~--------VtsLafS----------------PDg~lLASgS~DGtIr 310 (1757)
+..|..++.++.|.-.|..||+.+-.+...... ...+++. ..+..|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 557777788899999999999988876532210 1122221 1344788888999999
Q ss_pred EEECCCCCceEEecCCCCceE-------------EEEecCC--CCceEEEEEEeC----------CCcEEEEecCCCCcc
Q 000268 311 VWRLPDGLPISVLRGHTAAVT-------------AIAFSPR--PGSVYQLLSSSD----------DGTCRIWDARYSQFS 365 (1757)
Q Consensus 311 VWDl~tg~~l~~l~gH~~~Vt-------------sLafSPd--g~~~~~LaSgs~----------DGtIrIWDl~tg~~~ 365 (1757)
-.|..+|+.+..+.. .+.|. .+.-.|- +. .+++|+. +|.|+-+|+.+|+.+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g---~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGT---TVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECC---EEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 999999999877642 22221 1111110 11 5666643 688999999999988
Q ss_pred ceeec
Q 000268 366 PRIYI 370 (1757)
Q Consensus 366 ~~i~l 370 (1757)
-.+..
T Consensus 350 W~~~~ 354 (764)
T TIGR03074 350 WAWDP 354 (764)
T ss_pred eEEec
Confidence 88764
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0047 Score=47.60 Aligned_cols=39 Identities=31% Similarity=0.682 Sum_probs=35.5
Q ss_pred ceeEEEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEe
Q 000268 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWS 271 (1757)
Q Consensus 233 ~k~l~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWD 271 (1757)
.+++..+.+|...|.++.|++.+.++++|+.|+.|++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 356778889999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0025 Score=85.09 Aligned_cols=79 Identities=14% Similarity=0.298 Sum_probs=72.1
Q ss_pred cccccccccccccccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHH
Q 000268 1662 VQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLV 1740 (1757)
Q Consensus 1662 ~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~~~s~i~~~a~~l~~~~ 1740 (1757)
.+..+.|+.+++...+++||.||..||||.|+|+.+..+-|-.-+.|..|+.+|++|..+||+|.+.+.+.++.+-...
T Consensus 1276 ~~~t~~f~~Pv~~k~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~~~~t~~~q~mls~~ 1354 (1563)
T KOG0008|consen 1276 SPNTYPFPTPVNAKEVKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPLASLTRQQQSMLSLC 1354 (1563)
T ss_pred CCCCcCCCCccchhhccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCchHHHHHHHHHHHHHH
Confidence 4667788888998999999999999999999999999999999999999999999999999999999999988665443
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.13 Score=65.04 Aligned_cols=132 Identities=20% Similarity=0.157 Sum_probs=81.3
Q ss_pred eEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe---CC-ceEEEEECCCCCceEEecCCCCceEEEEecCCCCc
Q 000268 266 LVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS---ND-CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS 341 (1757)
Q Consensus 266 tIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS---~D-GtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~ 341 (1757)
.+.+=|.. |.....+..-...+..-+|+|++..++..+ .. ..|.++++.+++....+. ..+.-..-+|+||++
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~- 250 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS- 250 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC-
Confidence 44444444 555566665566788889999998766542 22 469999999987655544 334445578999997
Q ss_pred eEEEEEEeCCCcEEEE--ecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeC-Cce--E
Q 000268 342 VYQLLSSSDDGTCRIW--DARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTL--A 416 (1757)
Q Consensus 342 ~~~LaSgs~DGtIrIW--Dl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~-DG~--I 416 (1757)
.++++...||...|| |+..+.. ..+.. ..+.-..=.|+|||+.|+..+. .|. |
T Consensus 251 -~l~f~~~rdg~~~iy~~dl~~~~~-~~Lt~--------------------~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I 308 (425)
T COG0823 251 -KLAFSSSRDGSPDIYLMDLDGKNL-PRLTN--------------------GFGINTSPSWSPDGSKIVFTSDRGGRPQI 308 (425)
T ss_pred -EEEEEECCCCCccEEEEcCCCCcc-eeccc--------------------CCccccCccCCCCCCEEEEEeCCCCCcce
Confidence 466777778775554 6665552 22210 0111114569999998887654 444 4
Q ss_pred EEecCC
Q 000268 417 RVWNAC 422 (1757)
Q Consensus 417 rVWDl~ 422 (1757)
.++++.
T Consensus 309 ~~~~~~ 314 (425)
T COG0823 309 YLYDLE 314 (425)
T ss_pred EEECCC
Confidence 455553
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.89 Score=57.40 Aligned_cols=253 Identities=15% Similarity=0.179 Sum_probs=125.2
Q ss_pred eEEEEEcCCCCEEEEE-eCC----ceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCC----------C
Q 000268 288 ITDLAVSSNNALVASA-SND----CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD----------G 352 (1757)
Q Consensus 288 VtsLafSPDg~lLASg-S~D----GtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~D----------G 352 (1757)
+..++++|+|++||.+ +.. ..|+|+|+.+|+.+...-.. .....+.|.+++.. ++.+...+ .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~--~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKG--FFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSE--EEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCE--EEEEEeCcccccccCCCCc
Confidence 3467899999988865 222 46999999999766532111 12234999999872 33333222 2
Q ss_pred cEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCc-ceEEEEECCCCCEEEEeeC---C-ceEEEecCCCCCCC
Q 000268 353 TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH-QIFCCAFNANGTVFVTGSS---D-TLARVWNACKPNTD 427 (1757)
Q Consensus 353 tIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~-~V~slafSpdG~~LasGs~---D-G~IrVWDl~t~~~~ 427 (1757)
.|.+|.+.+......+..... ... ....+..++++++|+.... + ..+.+.++....
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~-----------------~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~-- 263 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEP-----------------DEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG-- 263 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-T-----------------TCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT--
T ss_pred EEEEEECCCChHhCeeEEeec-----------------CCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC--
Confidence 367777776653322222111 112 2667889999998876443 2 456777775421
Q ss_pred CCCCCCcceeeecCCCCCce-EEEEccCccccccccccCCCCCCCCcccccccCCCcEEEE---cCCCeEEEEeCCCCCC
Q 000268 428 DSDQPNHEIDVLSGHENDVN-YVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC---SRDGSAIIWIPRSRRS 503 (1757)
Q Consensus 428 ~s~~~~~~i~~l~gH~~~V~-sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSg---S~DGtI~IWDl~t~k~ 503 (1757)
.+......+......+. .+....+ .+++.. ...+.|...++.....
T Consensus 264 ---~~~~~~~~l~~~~~~~~~~v~~~~~---------------------------~~yi~Tn~~a~~~~l~~~~l~~~~~ 313 (414)
T PF02897_consen 264 ---SPDAKPKLLSPREDGVEYYVDHHGD---------------------------RLYILTNDDAPNGRLVAVDLADPSP 313 (414)
T ss_dssp ---TSS-SEEEEEESSSS-EEEEEEETT---------------------------EEEEEE-TT-TT-EEEEEETTSTSG
T ss_pred ---CCcCCcEEEeCCCCceEEEEEccCC---------------------------EEEEeeCCCCCCcEEEEeccccccc
Confidence 01122233333333332 2222211 122222 2234555555553110
Q ss_pred CcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEE-EecCC--eEEEEECCCCceEEEEeC
Q 000268 504 HPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA-AIMDC--RICVWNAADGSLVHSLTG 580 (1757)
Q Consensus 504 ~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaS-Gs~DG--~I~IWDl~tgkll~~L~g 580 (1757)
..| ...+..+...+.-..+...+.+|+. ...++ .|+++++..+.....+..
T Consensus 314 ----~~~----------------------~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~ 367 (414)
T PF02897_consen 314 ----AEW----------------------WTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPL 367 (414)
T ss_dssp ----GGE----------------------EEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEES
T ss_pred ----ccc----------------------eeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecC
Confidence 011 1133444444333344445555554 33443 488999984444444433
Q ss_pred -CCCCeEEEEEecCCCcEEEEEeC---CCcEEEEeCCCCceE
Q 000268 581 -HTESTYVLDVHPFNPRIAMSAGY---DGKTIVWDIWEGIPI 618 (1757)
Q Consensus 581 -H~~~VtsLafSPdd~~lLaSgs~---DG~IrIWDl~tg~~l 618 (1757)
-.+.|..+...+....+.++.+. -++|..||+.+++..
T Consensus 368 p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 368 PEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp SSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred CcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 33445666655655555555432 356888888888754
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0012 Score=82.04 Aligned_cols=206 Identities=20% Similarity=0.313 Sum_probs=130.1
Q ss_pred CcceEEEEECCC--CCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCC
Q 000268 392 SHQIFCCAFNAN--GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 469 (1757)
Q Consensus 392 ~~~V~slafSpd--G~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~ 469 (1757)
...+.|+++.-+ ...+++|..+|.|.+-.++...- .......+|...+++++|++-.
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd-------Ss~E~tp~~ar~Ct~lAwneLD-------------- 114 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD-------SSAEVTPGYARPCTSLAWNELD-------------- 114 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCccc-------ccceeccccccccccccccccc--------------
Confidence 344667776553 35788999999999998865321 1234567788899999998642
Q ss_pred CCCcccccccCCCcEEEEc----CCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeE
Q 000268 470 STPKFKNSWFCHDNIVTCS----RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNM 545 (1757)
Q Consensus 470 ~~~~~~~~~~~~~~LvSgS----~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~Vts 545 (1757)
.+.||.|- .|-.+.|||+.++-.. |+ ....... +...+..+
T Consensus 115 -----------tn~LAagldkhrnds~~~Iwdi~s~ltv-----------------Pk------e~~~fs~-~~l~gqns 159 (783)
T KOG1008|consen 115 -----------TNHLAAGLDKHRNDSSLKIWDINSLLTV-----------------PK------ESPLFSS-STLDGQNS 159 (783)
T ss_pred -----------HHHHHhhhhhhcccCCccceecccccCC-----------------Cc------ccccccc-ccccCccc
Confidence 13555552 3677999999863210 00 0000000 13345668
Q ss_pred EEEcCCCCEEEEEecCCeEEEEECCCC-ceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC-CC-CceEEEEe
Q 000268 546 IVWSLDNRFVLAAIMDCRICVWNAADG-SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI-WE-GIPIRIYE 622 (1757)
Q Consensus 546 VafSPDG~~LaSGs~DG~I~IWDl~tg-kll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl-~t-g~~l~~l~ 622 (1757)
++|-.+.++|++|.....+.++|++.. .....+ .+..|..+.+.|..+.++++- .||.|.+||. .+ ..++..+.
T Consensus 160 ~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~-~dg~iAiwD~~rnienpl~~i~ 236 (783)
T KOG1008|consen 160 VCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSN-SDGDIAIWDTYRNIENPLQIIL 236 (783)
T ss_pred cccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceecc-ccCceeeccchhhhccHHHHHh
Confidence 999999999999999999999998621 111111 223456677888777777554 5999999993 22 22333222
Q ss_pred ecC----cceEEEEEcCCC--CEEEEEeCCCeEEEEECCC
Q 000268 623 ISR----FRLVDGKFSPDG--ASIILSDDVGQLYILNTGQ 656 (1757)
Q Consensus 623 ~~~----~~VtslafSPDG--k~LAsgs~DG~I~IWdl~t 656 (1757)
... ..+..++|+|.. .+++..-..++|+++++..
T Consensus 237 ~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 237 RNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred hCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 111 248899999964 3444456678999999743
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.49 E-value=1.6 Score=55.20 Aligned_cols=65 Identities=18% Similarity=0.235 Sum_probs=46.7
Q ss_pred EEECCCCCEEEEEcCC----------c-eEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECC
Q 000268 249 AIFDRSGRYVITGSDD----------R-LVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP 315 (1757)
Q Consensus 249 VaFSPDG~~LATGS~D----------G-tIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~ 315 (1757)
++.+|.|..||...++ . .|.||+.. |+++.++.-..+.|.++.|+.+. .|++...||.++++|+.
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence 4455555555554333 2 59999965 77777776555899999999865 55566689999999986
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.15 Score=65.81 Aligned_cols=160 Identities=16% Similarity=0.120 Sum_probs=98.9
Q ss_pred ECCCCCEEEEE-cCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC------------------------
Q 000268 251 FDRSGRYVITG-SDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN------------------------ 305 (1757)
Q Consensus 251 FSPDG~~LATG-S~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~------------------------ 305 (1757)
++|||+.|... -..+.+.+.|.++.+...++.-- +....++++++|+++++.+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 45666655332 23567777788777776665532 24456677777777766641
Q ss_pred ----------------CceEEEEECCC----C-CceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCc
Q 000268 306 ----------------DCIIRVWRLPD----G-LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQF 364 (1757)
Q Consensus 306 ----------------DGtIrVWDl~t----g-~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~ 364 (1757)
++.|.|.|..+ + ..+..+. -....+.++++||++ +.++++..+.+|.|.|+.+.+.
T Consensus 279 ~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGk--ylyVanklS~tVSVIDv~k~k~ 355 (635)
T PRK02888 279 ARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGK--YFIANGKLSPTVTVIDVRKLDD 355 (635)
T ss_pred HHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCC--EEEEeCCCCCcEEEEEChhhhh
Confidence 24567777666 3 2333332 345678899999998 3566677799999999987553
Q ss_pred cceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCC
Q 000268 365 SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACK 423 (1757)
Q Consensus 365 ~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t 423 (1757)
...-.+ .+...+.+ ...-.......+|.++|..+.+-.-|..|..|++.+
T Consensus 356 ~~~~~~-~~~~~vva--------evevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 356 LFDGKI-KPRDAVVA--------EPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhccC-CccceEEE--------eeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 211101 00000000 001123356778999999888888899999999854
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.18 Score=59.20 Aligned_cols=170 Identities=11% Similarity=0.122 Sum_probs=97.9
Q ss_pred EEEEccCCCCEEEEEECCCCC-EEEEEcCCceEEEEecCCCeEEEEEecC-CCCeEEEEEcCCCCEEEEEeCCceEEEEE
Q 000268 236 IKRVRGHRNAVYCAIFDRSGR-YVITGSDDRLVKIWSMETAYCLASCRGH-EGDITDLAVSSNNALVASASNDCIIRVWR 313 (1757)
Q Consensus 236 l~tL~GH~~~V~~VaFSPDG~-~LATGS~DGtIkIWDl~tg~~l~tL~gH-~~~VtsLafSPDg~lLASgS~DGtIrVWD 313 (1757)
.+.|.|-...|..++|+|+.. ++|+....+.|...+. +|+.++++.-. .+..-.|++..++.++++--.++.+.+.+
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 456777777899999999866 4555566788888886 58888887633 46788999998887777665689999998
Q ss_pred CCCCC---ce---EEec-----CCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCC--C-CccceeecCCCCccccC
Q 000268 314 LPDGL---PI---SVLR-----GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY--S-QFSPRIYIPRPSDAVAG 379 (1757)
Q Consensus 314 l~tg~---~l---~~l~-----gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~t--g-~~~~~i~l~~~~~~~~g 379 (1757)
+.... .. ..+. .+...+-.|+|.|.++ .|+.+-...-..+|.+.. . ........ ...
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~---~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~---~~~--- 163 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTN---RLFVAKERKPKRLYEVNGFPGGFDLFVSDD---QDL--- 163 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTT---EEEEEEESSSEEEEEEESTT-SS--EEEE----HHH---
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCC---EEEEEeCCCChhhEEEccccCccceeeccc---ccc---
Confidence 84321 11 1121 2445689999999876 566667776677777654 1 11111100 000
Q ss_pred CCCCCCCCCCCCCcceEEEEECCC-CCEEEEeeCCceEEEecC
Q 000268 380 RNMAPSSSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNA 421 (1757)
Q Consensus 380 ~~~~~~~~~~~~~~~V~slafSpd-G~~LasGs~DG~IrVWDl 421 (1757)
.........+.+++++|. |.+++....+..|.++|.
T Consensus 164 ------~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~ 200 (248)
T PF06977_consen 164 ------DDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR 200 (248)
T ss_dssp ------H-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T
T ss_pred ------ccccceeccccceEEcCCCCeEEEEECCCCeEEEECC
Confidence 001122334788999985 566777777888888885
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.30 E-value=1.2 Score=56.16 Aligned_cols=250 Identities=18% Similarity=0.174 Sum_probs=129.3
Q ss_pred eEEEEecCCCCceEEEEEEeCCC----cEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCC
Q 000268 330 VTAIAFSPRPGSVYQLLSSSDDG----TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT 405 (1757)
Q Consensus 330 VtsLafSPdg~~~~~LaSgs~DG----tIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~ 405 (1757)
+..++++|+++ +++++.+..| +|+++|+.+++.+..... ......++|.++++
T Consensus 126 ~~~~~~Spdg~--~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~---------------------~~~~~~~~W~~d~~ 182 (414)
T PF02897_consen 126 LGGFSVSPDGK--RLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE---------------------NPKFSSVSWSDDGK 182 (414)
T ss_dssp EEEEEETTTSS--EEEEEEEETTSSEEEEEEEETTTTEEEEEEEE---------------------EEESEEEEECTTSS
T ss_pred eeeeeECCCCC--EEEEEecCCCCceEEEEEEECCCCcCcCCccc---------------------ccccceEEEeCCCC
Confidence 34678899987 2333434444 499999999975543210 11123489999988
Q ss_pred EEEEeeCC-----------ceEEEecCCCCCCCCCCCCCcceeeecCCCCC--ceEEEEccCccccccccccCCCCCCCC
Q 000268 406 VFVTGSSD-----------TLARVWNACKPNTDDSDQPNHEIDVLSGHEND--VNYVQFSGCAVASRFSLADSSKEDSTP 472 (1757)
Q Consensus 406 ~LasGs~D-----------G~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~--V~sLafSpdg~~s~~~~~~~~~~~~~~ 472 (1757)
.|+....+ ..|+.|.+.++. ......+...... ...+..++++
T Consensus 183 ~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~-------~~d~lvfe~~~~~~~~~~~~~s~d~----------------- 238 (414)
T PF02897_consen 183 GFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQ-------SEDELVFEEPDEPFWFVSVSRSKDG----------------- 238 (414)
T ss_dssp EEEEEECSTTTSS-CCGCCEEEEEEETTS-G-------GG-EEEEC-TTCTTSEEEEEE-TTS-----------------
T ss_pred EEEEEEeCcccccccCCCCcEEEEEECCCCh-------HhCeeEEeecCCCcEEEEEEecCcc-----------------
Confidence 76655432 237777775421 1112233333333 3455566654
Q ss_pred cccccccCCCcEE-EEcCC---CeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEE
Q 000268 473 KFKNSWFCHDNIV-TCSRD---GSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 548 (1757)
Q Consensus 473 ~~~~~~~~~~~Lv-SgS~D---GtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVaf 548 (1757)
.+|+ ..... ..+.+.++.... ........+......+....-
T Consensus 239 ---------~~l~i~~~~~~~~s~v~~~d~~~~~-------------------------~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 239 ---------RYLFISSSSGTSESEVYLLDLDDGG-------------------------SPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp ---------SEEEEEEESSSSEEEEEEEECCCTT-------------------------TSS-SEEEEEESSSS-EEEEE
T ss_pred ---------cEEEEEEEccccCCeEEEEeccccC-------------------------CCcCCcEEEeCCCCceEEEEE
Confidence 3333 23222 235555554310 001112222333333433333
Q ss_pred cCCCCEEEEE---ecCCeEEEEECCCCce---EEEEeCCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEeCCCCceEEE
Q 000268 549 SLDNRFVLAA---IMDCRICVWNAADGSL---VHSLTGHTESTYVLDVHPFNPRIAMSAGYDG--KTIVWDIWEGIPIRI 620 (1757)
Q Consensus 549 SPDG~~LaSG---s~DG~I~IWDl~tgkl---l~~L~gH~~~VtsLafSPdd~~lLaSgs~DG--~IrIWDl~tg~~l~~ 620 (1757)
...+.+++.. ...+.|...++.+... ...+..|...+.-..+..+++.+++..-.++ .|+++++..+.....
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~ 364 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESRE 364 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEE
T ss_pred ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEee
Confidence 3344444443 3456788888877653 3356666664444444444667777776666 578899973554444
Q ss_pred Eee-cCcceEEEEEcCCCCEEEEE--e--CCCeEEEEECCCCccc
Q 000268 621 YEI-SRFRLVDGKFSPDGASIILS--D--DVGQLYILNTGQGESQ 660 (1757)
Q Consensus 621 l~~-~~~~VtslafSPDGk~LAsg--s--~DG~I~IWdl~tGe~~ 660 (1757)
+.. ..+.|..+...+++..|... + .-++|+.||+.+|+..
T Consensus 365 ~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 365 IPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred ecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 443 34456666666777766543 2 2468999999998754
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.22 E-value=2.5 Score=50.11 Aligned_cols=254 Identities=14% Similarity=0.163 Sum_probs=128.0
Q ss_pred CCCCEEEEEeCCceEEEEECCC-CCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeec-CC
Q 000268 295 SNNALVASASNDCIIRVWRLPD-GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYI-PR 372 (1757)
Q Consensus 295 PDg~lLASgS~DGtIrVWDl~t-g~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l-~~ 372 (1757)
..++.|+.|+.+| |.++++.. ........ ...|..+...++-+ .|++-+ |+.|.++++..-........ ..
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~---~llvLs-d~~l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELN---LLLVLS-DGQLYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccC---EEEEEc-CCccEEEEchhhccccccccccc
Confidence 4577899999888 89999833 33333332 33499999999765 444443 59999999876543331100 00
Q ss_pred CCccccCCCCCCCCCCCCCCcceEEEE--ECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCC-cceeeecCCCCCceEE
Q 000268 373 PSDAVAGRNMAPSSSAGPQSHQIFCCA--FNANGTVFVTGSSDTLARVWNACKPNTDDSDQPN-HEIDVLSGHENDVNYV 449 (1757)
Q Consensus 373 ~~~~~~g~~~~~~~~~~~~~~~V~sla--fSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~-~~i~~l~gH~~~V~sL 449 (1757)
+. . ............+..++ -...+...++......|.+|....... .. .....+. -...+.++
T Consensus 78 ~~----~---~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~-----~f~~~~ke~~-lp~~~~~i 144 (275)
T PF00780_consen 78 PK----S---RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRN-----SFSKLLKEIS-LPDPPSSI 144 (275)
T ss_pred cc----c---ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcc-----cccceeEEEE-cCCCcEEE
Confidence 00 0 00000111222344444 122333333344455888888754211 11 2233322 23667788
Q ss_pred EEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCC
Q 000268 450 QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPR 529 (1757)
Q Consensus 450 afSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~ 529 (1757)
+|.+ +.++.|..++ ..+.|+.++......... ..
T Consensus 145 ~~~~----------------------------~~i~v~~~~~-f~~idl~~~~~~~l~~~~-----------------~~ 178 (275)
T PF00780_consen 145 AFLG----------------------------NKICVGTSKG-FYLIDLNTGSPSELLDPS-----------------DS 178 (275)
T ss_pred EEeC----------------------------CEEEEEeCCc-eEEEecCCCCceEEeCcc-----------------CC
Confidence 8774 3566666544 666777753321110000 00
Q ss_pred CCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEE--EEeCCCCCeEEEEEecCCCcEEEEEeCCCcE
Q 000268 530 GGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVH--SLTGHTESTYVLDVHPFNPRIAMSAGYDGKT 607 (1757)
Q Consensus 530 ~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~--~L~gH~~~VtsLafSPdd~~lLaSgs~DG~I 607 (1757)
............++..+.+. ++.+|++- |..-.+.|. .|+..+ .+.-.. ....+++.. + +|+..+ ++.|
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~~-~p~~~~~~~--p-yli~~~-~~~i 249 (275)
T PF00780_consen 179 SSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWSS-APQSVAYSS--P-YLIAFS-SNSI 249 (275)
T ss_pred cchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEEEcCC-chhEEEEEC--C-EEEEEC-CCEE
Confidence 00001111122334444443 45666653 333334443 555443 333222 345566643 3 444443 4669
Q ss_pred EEEeCCCCceEEEEee
Q 000268 608 IVWDIWEGIPIRIYEI 623 (1757)
Q Consensus 608 rIWDl~tg~~l~~l~~ 623 (1757)
.||++.+|++++++..
T Consensus 250 EV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 250 EVRSLETGELVQTIPL 265 (275)
T ss_pred EEEECcCCcEEEEEEC
Confidence 9999999999998873
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.019 Score=72.18 Aligned_cols=93 Identities=12% Similarity=0.084 Sum_probs=78.0
Q ss_pred CCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeE-EEEEcCCCCEEEEEeCCceEEEEECCCCCceEE
Q 000268 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT-DLAVSSNNALVASASNDCIIRVWRLPDGLPISV 322 (1757)
Q Consensus 244 ~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~Vt-sLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~ 322 (1757)
..|.-+.|+|.-..+|++..+|.|.+..+. .+.+.++.-|...++ +++|.|||++||.|-.||+|++.|+++|..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 457788899999999999999999999988 788888887888887 999999999999999999999999999877655
Q ss_pred e-cCCCCceEEEEecC
Q 000268 323 L-RGHTAAVTAIAFSP 337 (1757)
Q Consensus 323 l-~gH~~~VtsLafSP 337 (1757)
. ..-...|.++.|.+
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 2 22345566666654
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.017 Score=44.41 Aligned_cols=39 Identities=36% Similarity=0.632 Sum_probs=35.1
Q ss_pred CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEE
Q 000268 275 AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1757)
Q Consensus 275 g~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWD 313 (1757)
+.++..+..|...|.++.|.+++.++++++.|+.|++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456777788999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.00097 Score=78.94 Aligned_cols=72 Identities=18% Similarity=0.129 Sum_probs=66.2
Q ss_pred cccccccccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHH
Q 000268 1668 VQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDL 1739 (1757)
Q Consensus 1668 ~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~~~s~i~~~a~~l~~~ 1739 (1757)
|.-++....+|+|.++|..|||+.||+.+++-++|-.+.++..|.++|..||..||.++..+...|+.|.-+
T Consensus 40 fafplt~~map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~Tv~~~aaKrL~~v 111 (418)
T KOG1828|consen 40 FAFPLTDKMAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPTVPIVAAKRLCPV 111 (418)
T ss_pred hccccchhhccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCccccccccccchh
Confidence 444556678999999999999999999999999999999999999999999999999999999999988765
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.29 Score=49.91 Aligned_cols=104 Identities=18% Similarity=0.259 Sum_probs=72.0
Q ss_pred EEEEEECC---CC-CEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceE
Q 000268 246 VYCAIFDR---SG-RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS 321 (1757)
Q Consensus 246 V~~VaFSP---DG-~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~ 321 (1757)
|+++++.. || ..|++||.|..|+||+-. ..+..+. -...|++++-... ..++.+..+|+|-+|+- ...+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 56666554 33 579999999999999854 5667766 3567888877765 57888999999999974 33344
Q ss_pred EecCCCCceEEEEe-cCCCCceEEEEEEeCCCcEEE
Q 000268 322 VLRGHTAAVTAIAF-SPRPGSVYQLLSSSDDGTCRI 356 (1757)
Q Consensus 322 ~l~gH~~~VtsLaf-SPdg~~~~~LaSgs~DGtIrI 356 (1757)
..+.... ++++++ ..++.....|++|-.+|.|-+
T Consensus 76 RiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 76 RIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 4443333 555554 444444457999999987743
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.21 Score=61.32 Aligned_cols=148 Identities=18% Similarity=0.120 Sum_probs=73.0
Q ss_pred CCceeecCCCCCeeEEEEcCCCCEEEEEecCC----e-EEEEECC-CCceEEEEeCCCC--CeEEEEEecCCCcEEEEEe
Q 000268 531 GPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC----R-ICVWNAA-DGSLVHSLTGHTE--STYVLDVHPFNPRIAMSAG 602 (1757)
Q Consensus 531 ~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG----~-I~IWDl~-tgkll~~L~gH~~--~VtsLafSPdd~~lLaSgs 602 (1757)
+....+......+..+.|||....+++=|..| . -+||-+. .|...+.+..|.. .+..=-|.|++..+..-+.
T Consensus 178 G~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~ 257 (386)
T PF14583_consen 178 GERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSY 257 (386)
T ss_dssp --EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEE
T ss_pred CceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEee
Confidence 33444555566688899999777666644322 1 2555443 3444444443332 2344467886666555332
Q ss_pred ----CCCcEEEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCC----------------CeEEEEECCCCcccc-
Q 000268 603 ----YDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDV----------------GQLYILNTGQGESQK- 661 (1757)
Q Consensus 603 ----~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~D----------------G~I~IWdl~tGe~~~- 661 (1757)
.+..|.-+|+.++........ .....+.-++||+++|.=+.| --|+++++..+....
T Consensus 258 ~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l 335 (386)
T PF14583_consen 258 TPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKL 335 (386)
T ss_dssp ETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEE
T ss_pred cCCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeee
Confidence 244577778888866543332 134456678999988753332 156778887765421
Q ss_pred ---------------ccccceeecCCCccEEEcc
Q 000268 662 ---------------DAKYDQFFLGDYRPLVQDT 680 (1757)
Q Consensus 662 ---------------~~~~~~~fs~D~r~Li~d~ 680 (1757)
.......|+||++.++..+
T Consensus 336 ~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~S 369 (386)
T PF14583_consen 336 ARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRS 369 (386)
T ss_dssp EE-------BTTBSSTT----EE-TTSSEEEEEE
T ss_pred eeccCcceeecCCCccCCCCCccCCCCCEEEEEC
Confidence 1224458999999988544
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.42 Score=59.88 Aligned_cols=188 Identities=14% Similarity=0.101 Sum_probs=124.5
Q ss_pred eeEEEEcCCCCEE-EEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEe--CCCcEEEEeCCCCceEE
Q 000268 543 VNMIVWSLDNRFV-LAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAG--YDGKTIVWDIWEGIPIR 619 (1757)
Q Consensus 543 VtsVafSPDG~~L-aSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs--~DG~IrIWDl~tg~~l~ 619 (1757)
...+++++.+..+ ++...+..|.+.|..+.+.++...--. ....++++|+++.+.++-. .++++.+.|..+++.+.
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 3567788888854 445556899999988777776654222 4578999996666666555 47899999999999998
Q ss_pred EEeecCcceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCccccccccceeecCCCccEEEccCCceeecccccccCcCCC
Q 000268 620 IYEISRFRLVDGKFSPDGASIILSD-DVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNL 698 (1757)
Q Consensus 620 ~l~~~~~~VtslafSPDGk~LAsgs-~DG~I~IWdl~tGe~~~~~~~~~~fs~D~r~Li~d~~g~vlD~~tql~phl~~l 698 (1757)
....+..+ ..++++|+|..+.++. .++.|.+++........ .. ..
T Consensus 155 ~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~-------~~------------------------- 200 (381)
T COG3391 155 TIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GS-------VG------------------------- 200 (381)
T ss_pred EEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cc-------cc-------------------------
Confidence 87666555 8899999999777664 78899999954322110 00 00
Q ss_pred CCcccCCCCCCCCCcchhhhhcccccccceEECCCCCeEEEeeCCCCCCceEeeccCCcccccC--CCcc-ccceeeeCC
Q 000268 699 QDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMID--PLPE-FIDVMDWEP 775 (1757)
Q Consensus 699 ~~~L~D~~~~p~p~~~Q~l~~~r~~~v~~lAfSPDG~~LAvg~d~s~~~~v~l~~l~~~~~l~~--plp~-~i~~~~~sP 775 (1757)
..+.. ..+...++++|||.++.+....+.+..+...++........ +... ....+...|
T Consensus 201 --~~~~~----------------~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p 262 (381)
T COG3391 201 --SLVGV----------------GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDP 262 (381)
T ss_pred --ccccc----------------CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECC
Confidence 00000 01123678999999888885555456777777766554432 2222 345678888
Q ss_pred CCCcccCC
Q 000268 776 ENEVQSDD 783 (1757)
Q Consensus 776 Dg~~ls~~ 783 (1757)
+|..+-.+
T Consensus 263 ~g~~~yv~ 270 (381)
T COG3391 263 AGKAAYVA 270 (381)
T ss_pred CCCEEEEE
Confidence 88776544
|
|
| >KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.0057 Score=72.72 Aligned_cols=72 Identities=7% Similarity=-0.042 Sum_probs=63.1
Q ss_pred cccccccccccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHH
Q 000268 1666 YGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSD 1738 (1757)
Q Consensus 1666 ~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~~~s~i~~~a~~l~~ 1738 (1757)
-.+..++....+|-|.-+|++|+|.+|++.+..+++|.+ -+|..|+.+|+.||-|||+++..++..|+++-.
T Consensus 227 ~~lnyg~tas~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~yyelank~lh 298 (418)
T KOG1828|consen 227 AYLNYGPTASFAPGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKSYYELANKQLH 298 (418)
T ss_pred hhhcccchhhhcccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchHHHHHHHhhhh
Confidence 344444555677899899999999999999999999999 899999999999999999999999999887644
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.27 Score=61.11 Aligned_cols=139 Identities=11% Similarity=0.129 Sum_probs=97.6
Q ss_pred EEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCC--E-----EEEEeCCceEEEEECCC-CC-ceEEecCCC-
Q 000268 258 VITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA--L-----VASASNDCIIRVWRLPD-GL-PISVLRGHT- 327 (1757)
Q Consensus 258 LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~--l-----LASgS~DGtIrVWDl~t-g~-~l~~l~gH~- 327 (1757)
|.++.....|+-.|++.|+.+.++.-|.. |.-+.+.|+++ . -+.|-.+..|.-||.+- +. .+...++|.
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 33455556788889999999999987766 88888888754 1 23456678899999862 22 333334442
Q ss_pred ---CceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCC
Q 000268 328 ---AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG 404 (1757)
Q Consensus 328 ---~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG 404 (1757)
....|.+-..+| ++++|+.+|-|++||- .+....+ .+.+.+..|..+..+.+|
T Consensus 428 ~~k~nFsc~aTT~sG----~IvvgS~~GdIRLYdr-i~~~AKT-------------------AlPgLG~~I~hVdvtadG 483 (644)
T KOG2395|consen 428 STKNNFSCFATTESG----YIVVGSLKGDIRLYDR-IGRRAKT-------------------ALPGLGDAIKHVDVTADG 483 (644)
T ss_pred ccccccceeeecCCc----eEEEeecCCcEEeehh-hhhhhhh-------------------cccccCCceeeEEeeccC
Confidence 345666666666 8999999999999996 3332221 233467789999999999
Q ss_pred CEEEEeeCCceEEEecCC
Q 000268 405 TVFVTGSSDTLARVWNAC 422 (1757)
Q Consensus 405 ~~LasGs~DG~IrVWDl~ 422 (1757)
++|++.+ +..+.+.++.
T Consensus 484 Kwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 484 KWILATC-KTYLLLIDTL 500 (644)
T ss_pred cEEEEec-ccEEEEEEEe
Confidence 9988765 5666676653
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.53 Score=59.00 Aligned_cols=250 Identities=11% Similarity=0.074 Sum_probs=121.7
Q ss_pred ceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEE
Q 000268 329 AVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFV 408 (1757)
Q Consensus 329 ~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~La 408 (1757)
.|+.+.|+++.. -|+++...|.|.||.....+....... ..-..+.|.+-
T Consensus 3 ~v~~vs~a~~t~---Elav~~~~GeVv~~k~~~n~~~~~~~~----------------------~~~~~~~~~~~----- 52 (395)
T PF08596_consen 3 SVTHVSFAPETL---ELAVGLESGEVVLFKFGKNQNYGNREQ----------------------PPDLDYNFRRF----- 52 (395)
T ss_dssp -EEEEEEETTTT---EEEEEETTS-EEEEEEEE----------------------------------------S------
T ss_pred eEEEEEecCCCc---eEEEEccCCcEEEEEcccCCCCCccCC----------------------CcccCcccccc-----
Confidence 588999999876 799999999999998765442210000 00000011100
Q ss_pred EeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEc
Q 000268 409 TGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCS 488 (1757)
Q Consensus 409 sGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS 488 (1757)
...++.-.+-|+.........+...+...+....+.|++++.+.-| .++.|.
T Consensus 53 -~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iG---------------------------Fvaigy 104 (395)
T PF08596_consen 53 -SLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSDIG---------------------------FVAIGY 104 (395)
T ss_dssp --GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-BTS---------------------------EEEEEE
T ss_pred -cccCCCcceEEehhhCCcccccccCchhheeccCCcEeEEecCCCc---------------------------EEEEEe
Confidence 0001111122222111000001123344555668999999998665 899999
Q ss_pred CCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcC-----CC---CEEEEEec
Q 000268 489 RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL-----DN---RFVLAAIM 560 (1757)
Q Consensus 489 ~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSP-----DG---~~LaSGs~ 560 (1757)
.+|.+.|.|++....... ....- ..........|+++.|+- |+ -.|++|+.
T Consensus 105 ~~G~l~viD~RGPavI~~-----~~i~~----------------~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn 163 (395)
T PF08596_consen 105 ESGSLVVIDLRGPAVIYN-----ENIRE----------------SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTN 163 (395)
T ss_dssp TTSEEEEEETTTTEEEEE-----EEGGG------------------T-SS----EEEEEEEEEE-TTSSSEEEEEEEEET
T ss_pred cCCcEEEEECCCCeEEee-----ccccc----------------cccccccccCeeEEEEEEEecCCCcccceEEEEEeC
Confidence 999999999986332111 00000 000111234577777762 33 36888999
Q ss_pred CCeEEEEECC--C-Cce----EEEEeCCCCCeEEEE-EecCC--------------------CcEEEEEeCCCcEEEEeC
Q 000268 561 DCRICVWNAA--D-GSL----VHSLTGHTESTYVLD-VHPFN--------------------PRIAMSAGYDGKTIVWDI 612 (1757)
Q Consensus 561 DG~I~IWDl~--t-gkl----l~~L~gH~~~VtsLa-fSPdd--------------------~~lLaSgs~DG~IrIWDl 612 (1757)
.|.+.+|.+. . +.. ......+.+.|..|. +..+. ..+++. ..+..|+|+..
T Consensus 164 ~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv-vSe~~irv~~~ 242 (395)
T PF08596_consen 164 SGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVV-VSESDIRVFKP 242 (395)
T ss_dssp TSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEE-E-SSEEEEE-T
T ss_pred CCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEE-EcccceEEEeC
Confidence 9999999874 1 221 222234556666655 32211 124433 34678999999
Q ss_pred CCCceEEEEeecCcceEEEEE-----cCCCCEEEEEeCCCeEEEEECCCCc
Q 000268 613 WEGIPIRIYEISRFRLVDGKF-----SPDGASIILSDDVGQLYILNTGQGE 658 (1757)
Q Consensus 613 ~tg~~l~~l~~~~~~Vtslaf-----SPDGk~LAsgs~DG~I~IWdl~tGe 658 (1757)
.+.+..+...........+.+ ...+..|++-..+|.|+++.+-.=+
T Consensus 243 ~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk 293 (395)
T PF08596_consen 243 PKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK 293 (395)
T ss_dssp T---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--
T ss_pred CCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch
Confidence 988887766522223334455 3467788888999999999986533
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.56 E-value=2.6 Score=51.11 Aligned_cols=105 Identities=14% Similarity=0.170 Sum_probs=69.2
Q ss_pred CCCCeeEEEEcCCCCEEEEEec-CCeEEEEECCC--C----ce-EEEEeCCCCCeEEEEEecCCCcEEEEEeCCC-cEEE
Q 000268 539 TPRGVNMIVWSLDNRFVLAAIM-DCRICVWNAAD--G----SL-VHSLTGHTESTYVLDVHPFNPRIAMSAGYDG-KTIV 609 (1757)
Q Consensus 539 h~~~VtsVafSPDG~~LaSGs~-DG~I~IWDl~t--g----kl-l~~L~gH~~~VtsLafSPdd~~lLaSgs~DG-~IrI 609 (1757)
+-..-+.|+||||++.|+.+.. .+.|.-|++.. + +. ...+..+.+..-.++... ++.+.+++..+| .|.+
T Consensus 161 ~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~ 239 (307)
T COG3386 161 DLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVVR 239 (307)
T ss_pred cEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccCCceEEE
Confidence 3455688999999987777654 47888887752 2 11 112222334444566655 445554554554 8999
Q ss_pred EeCCCCceEEEEeecCcceEEEEE-cCCCCEEEEEeC
Q 000268 610 WDIWEGIPIRIYEISRFRLVDGKF-SPDGASIILSDD 645 (1757)
Q Consensus 610 WDl~tg~~l~~l~~~~~~Vtslaf-SPDGk~LAsgs~ 645 (1757)
|+.. |+++..+......+++++| .|+.+.|.+++.
T Consensus 240 ~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 240 FNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred ECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 9997 9999999877678888888 566676665543
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=95.49 E-value=3 Score=51.22 Aligned_cols=74 Identities=18% Similarity=0.063 Sum_probs=44.4
Q ss_pred EEEeCCCCCeEEEEEecC------CCcEEEEEeCCCcEEEEeCCCCceEEEE---e-ecCcceEEEEEcCCCCEEEEEeC
Q 000268 576 HSLTGHTESTYVLDVHPF------NPRIAMSAGYDGKTIVWDIWEGIPIRIY---E-ISRFRLVDGKFSPDGASIILSDD 645 (1757)
Q Consensus 576 ~~L~gH~~~VtsLafSPd------d~~lLaSgs~DG~IrIWDl~tg~~l~~l---~-~~~~~VtslafSPDGk~LAsgs~ 645 (1757)
..+..| ..+..+.|-.. .+.++++.-..+.|....+..+..+... . .....+.++++.|||.+.++.+.
T Consensus 247 ~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~ 325 (331)
T PF07995_consen 247 FAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDS 325 (331)
T ss_dssp EEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-T
T ss_pred eeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECC
Confidence 344444 45677777642 3346655555667777777655333222 1 12337899999999999999888
Q ss_pred CCeEE
Q 000268 646 VGQLY 650 (1757)
Q Consensus 646 DG~I~ 650 (1757)
+|.|+
T Consensus 326 ~G~iy 330 (331)
T PF07995_consen 326 DGKIY 330 (331)
T ss_dssp TTTEE
T ss_pred CCeEe
Confidence 88875
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=95.49 E-value=1.8 Score=58.15 Aligned_cols=132 Identities=15% Similarity=0.166 Sum_probs=86.8
Q ss_pred CCEEEEE-eCCceEEEEECCCCCceEEecCCCCc-eEEEEecCCCCc----eEEEEEEeCCCcEEEEecCCCCccceeec
Q 000268 297 NALVASA-SNDCIIRVWRLPDGLPISVLRGHTAA-VTAIAFSPRPGS----VYQLLSSSDDGTCRIWDARYSQFSPRIYI 370 (1757)
Q Consensus 297 g~lLASg-S~DGtIrVWDl~tg~~l~~l~gH~~~-VtsLafSPdg~~----~~~LaSgs~DGtIrIWDl~tg~~~~~i~l 370 (1757)
.++|+.. .....|+-.|++.|+.+..+..|... |.. |.|+.+. ....+.|-.+..|..||.+-.. ..+..
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~--~k~v~ 568 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG--NKLVD 568 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCC--Cceee
Confidence 3444443 34578999999999999999877644 444 4443210 1145677778889999998543 11100
Q ss_pred CCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEE
Q 000268 371 PRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQ 450 (1757)
Q Consensus 371 ~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLa 450 (1757)
.. ...........|++-+.+| +||+|+.+|.||+||-- + ......+.+-..+|..|.
T Consensus 569 -~~------------~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g--------~~AKT~lp~lG~pI~~iD 625 (794)
T PF08553_consen 569 -SQ------------SKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL-G--------KRAKTALPGLGDPIIGID 625 (794)
T ss_pred -cc------------ccccccCCCceEEEecCCc-eEEEEeCCCcEEeeccc-c--------hhhhhcCCCCCCCeeEEE
Confidence 00 0011234557888888777 59999999999999942 1 123345667788999999
Q ss_pred EccCc
Q 000268 451 FSGCA 455 (1757)
Q Consensus 451 fSpdg 455 (1757)
.+.+|
T Consensus 626 vt~DG 630 (794)
T PF08553_consen 626 VTADG 630 (794)
T ss_pred ecCCC
Confidence 99987
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.45 E-value=3.5 Score=52.59 Aligned_cols=127 Identities=15% Similarity=0.101 Sum_probs=68.6
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCC
Q 000268 283 GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 362 (1757)
Q Consensus 283 gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg 362 (1757)
........|.++|+|++++++ .+|...|+.....+... .+.-...+|.+.+ .+|+-...++|.|+.--..
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n----~yAv~~~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN----RYAVLESSSTIKIYKNFKN 99 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS----EEEEE-TTS-EEEEETTEE
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecCc----cEEEEECCCeEEEEEcCcc
Confidence 344557899999999999884 57788888743333322 2344568898854 5777777888999632222
Q ss_pred CccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCC
Q 000268 363 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH 442 (1757)
Q Consensus 363 ~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH 442 (1757)
.....+.. ...+..|.. |.+|+..+.+ .|.+||+.+ .+.+..+...
T Consensus 100 ~~~k~i~~---------------------~~~~~~If~---G~LL~~~~~~-~i~~yDw~~---------~~~i~~i~v~ 145 (443)
T PF04053_consen 100 EVVKSIKL---------------------PFSVEKIFG---GNLLGVKSSD-FICFYDWET---------GKLIRRIDVS 145 (443)
T ss_dssp -TT--------------------------SS-EEEEE----SSSEEEEETT-EEEEE-TTT-----------EEEEESS-
T ss_pred ccceEEcC---------------------CcccceEEc---CcEEEEECCC-CEEEEEhhH---------cceeeEEecC
Confidence 22222211 111333322 8877777654 899999965 3455555433
Q ss_pred CCCceEEEEccCc
Q 000268 443 ENDVNYVQFSGCA 455 (1757)
Q Consensus 443 ~~~V~sLafSpdg 455 (1757)
.|..+.|++++
T Consensus 146 --~vk~V~Ws~~g 156 (443)
T PF04053_consen 146 --AVKYVIWSDDG 156 (443)
T ss_dssp --E-EEEEE-TTS
T ss_pred --CCcEEEEECCC
Confidence 38999999886
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=95.44 E-value=1 Score=54.82 Aligned_cols=142 Identities=11% Similarity=0.127 Sum_probs=89.8
Q ss_pred CCEEEEEcC----------CceEEEEecCCC----eEEEEE--ecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCC
Q 000268 255 GRYVITGSD----------DRLVKIWSMETA----YCLASC--RGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL 318 (1757)
Q Consensus 255 G~~LATGS~----------DGtIkIWDl~tg----~~l~tL--~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~ 318 (1757)
-.+|+.|+. .|.|.++++... ..+..+ ....++|++|+-- ++ +|+++. ++.|.+|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcc
Confidence 467877743 299999999884 122222 2357889999876 44 454443 4689999998777
Q ss_pred -ceEEec-CCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCc-cceeecCCCCccccCCCCCCCCCCCCCCcce
Q 000268 319 -PISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQF-SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 395 (1757)
Q Consensus 319 -~l~~l~-gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~-~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V 395 (1757)
.+.... .....|+++....+ +++.|.....|.++....... +..+. .......+
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~~~-----~I~vgD~~~sv~~~~~~~~~~~l~~va------------------~d~~~~~v 175 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVFKN-----YILVGDAMKSVSLLRYDEENNKLILVA------------------RDYQPRWV 175 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEETT-----EEEEEESSSSEEEEEEETTTE-EEEEE------------------EESS-BEE
T ss_pred cchhhheecceEEEEEEecccc-----EEEEEEcccCEEEEEEEccCCEEEEEE------------------ecCCCccE
Confidence 433322 12336677766643 788998888888875543211 11110 01134568
Q ss_pred EEEEECCCCCEEEEeeCCceEEEecCC
Q 000268 396 FCCAFNANGTVFVTGSSDTLARVWNAC 422 (1757)
Q Consensus 396 ~slafSpdG~~LasGs~DG~IrVWDl~ 422 (1757)
+++.|-+++..++++..+|.+.++...
T Consensus 176 ~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 176 TAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 899998776799999999999999885
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.041 Score=69.31 Aligned_cols=78 Identities=10% Similarity=0.137 Sum_probs=69.4
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCcceE-EEEEcCCCCEEEEEeCCCeEEEEECCCCcccc
Q 000268 583 ESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLV-DGKFSPDGASIILSDDVGQLYILNTGQGESQK 661 (1757)
Q Consensus 583 ~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~Vt-slafSPDGk~LAsgs~DG~I~IWdl~tGe~~~ 661 (1757)
..|.-+.|+| .-.++|.+..+|.|.+..+. .+.++++..+...++ +++|.|||+.||+|-.||+|.+.|+.+|..+.
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3577899999 67789999999999999996 889999987777777 99999999999999999999999999987765
Q ss_pred c
Q 000268 662 D 662 (1757)
Q Consensus 662 ~ 662 (1757)
.
T Consensus 99 ~ 99 (665)
T KOG4640|consen 99 S 99 (665)
T ss_pred c
Confidence 4
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.36 E-value=4 Score=49.57 Aligned_cols=230 Identities=12% Similarity=0.061 Sum_probs=125.1
Q ss_pred EEcCCCC-EEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeec
Q 000268 292 AVSSNNA-LVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYI 370 (1757)
Q Consensus 292 afSPDg~-lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l 370 (1757)
.|.++.. ++.+--..+.|.-|+..+|+.. .+. +.+.+.++.....+. .|+++. .| +.+++..++.....+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g---~Lv~~~-~g-~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGG---RLIACE-HG-VRLLDPDTGGKITLLAE 103 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCC---eEEEEc-cc-cEEEeccCCceeEEecc
Confidence 4666666 4445555788888988766432 232 233344444444333 444443 33 66777765554222211
Q ss_pred CCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeC-----------CceEEEecCCCCCCCCCCCCCcceeee
Q 000268 371 PRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-----------DTLARVWNACKPNTDDSDQPNHEIDVL 439 (1757)
Q Consensus 371 ~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~-----------DG~IrVWDl~t~~~~~s~~~~~~i~~l 439 (1757)
.. ........+.+...|+|.+.++... -|.|+.++.. +..+..+
T Consensus 104 ~~---------------~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~----------g~~~~l~ 158 (307)
T COG3386 104 PE---------------DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD----------GGVVRLL 158 (307)
T ss_pred cc---------------CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC----------CCEEEee
Confidence 00 0112234566778888876554332 1223333321 2344445
Q ss_pred cCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCC
Q 000268 440 SGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVP 519 (1757)
Q Consensus 440 ~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~ 519 (1757)
..+-..-+.|+|+|++ ..++++=+..+.|..|++.... .
T Consensus 159 ~~~~~~~NGla~SpDg-------------------------~tly~aDT~~~~i~r~~~d~~~--g-------------- 197 (307)
T COG3386 159 DDDLTIPNGLAFSPDG-------------------------KTLYVADTPANRIHRYDLDPAT--G-------------- 197 (307)
T ss_pred cCcEEecCceEECCCC-------------------------CEEEEEeCCCCeEEEEecCccc--C--------------
Confidence 5555566789999987 1234444455777777665200 0
Q ss_pred CCCCCCCCCCCCC-ceeecCCCCCeeEEEEcCCCCEEEEEecCC-eEEEEECCCCceEEEEeCCCCCeEEEEEec-CCCc
Q 000268 520 PPPMPPQPPRGGP-RQRILPTPRGVNMIVWSLDNRFVLAAIMDC-RICVWNAADGSLVHSLTGHTESTYVLDVHP-FNPR 596 (1757)
Q Consensus 520 ~~~~~~~~~~~~~-~~~l~~h~~~VtsVafSPDG~~LaSGs~DG-~I~IWDl~tgkll~~L~gH~~~VtsLafSP-dd~~ 596 (1757)
...... ........+..-.++...+|.+.+++..+| .|.+|+.. |+++..+.-....+++++|-- +...
T Consensus 198 -------~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~ 269 (307)
T COG3386 198 -------PIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNT 269 (307)
T ss_pred -------ccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCE
Confidence 000000 111112234455678888998887666655 89999987 999999888767788888842 2234
Q ss_pred EEEEEe
Q 000268 597 IAMSAG 602 (1757)
Q Consensus 597 lLaSgs 602 (1757)
+++|+.
T Consensus 270 L~iTs~ 275 (307)
T COG3386 270 LYITSA 275 (307)
T ss_pred EEEEec
Confidence 444443
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.45 Score=62.60 Aligned_cols=152 Identities=14% Similarity=0.122 Sum_probs=86.4
Q ss_pred CCEEEEEECCCCCEEEEEc------CCc--eEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC---------
Q 000268 244 NAVYCAIFDRSGRYVITGS------DDR--LVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND--------- 306 (1757)
Q Consensus 244 ~~V~~VaFSPDG~~LATGS------~DG--tIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~D--------- 306 (1757)
..+...++||+|+.+|... .|+ .|.+++. .+.......+ ...+.-.|+|||..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678999999999988665 243 4555564 2333222233 248889999998888776532
Q ss_pred ---ceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEE---EecCCCCccceeecCCCCccccCC
Q 000268 307 ---CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI---WDARYSQFSPRIYIPRPSDAVAGR 380 (1757)
Q Consensus 307 ---GtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrI---WDl~tg~~~~~i~l~~~~~~~~g~ 380 (1757)
+.+.+..+..+.... ...+.|..+.|||||. .|+... +|.|.+ -....|. ..+. .
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~---RiA~i~-~g~v~Va~Vvr~~~G~--~~l~--~-------- 487 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGV---RAAMII-GGKVYLAVVEQTEDGQ--YALT--N-------- 487 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCC---EEEEEE-CCEEEEEEEEeCCCCc--eeec--c--------
Confidence 233333444433322 2356799999999998 444433 466766 3323332 1110 0
Q ss_pred CCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecC
Q 000268 381 NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNA 421 (1757)
Q Consensus 381 ~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl 421 (1757)
+..........+..+.|..++.++ ++..++...+|.+
T Consensus 488 ---~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 488 ---PREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred ---cEEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence 000011122335778999998854 5555555556654
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=95.24 E-value=17 Score=49.23 Aligned_cols=113 Identities=5% Similarity=-0.007 Sum_probs=69.2
Q ss_pred CCEEEEEECCCCCEEEEEcC-----CceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC------ceEEEE
Q 000268 244 NAVYCAIFDRSGRYVITGSD-----DRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND------CIIRVW 312 (1757)
Q Consensus 244 ~~V~~VaFSPDG~~LATGS~-----DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~D------GtIrVW 312 (1757)
-.+..+.+||||++||.+.+ ...|++-|+.+|..+...-.... ..++|++|++.|+.+..+ ..|..|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 34667889999999987633 34799999998874433221211 569999999866655432 368888
Q ss_pred ECCCC--CceEEecCCCCceE-EEEecCCCCceEEEEEE--eCCCcEEEEecC
Q 000268 313 RLPDG--LPISVLRGHTAAVT-AIAFSPRPGSVYQLLSS--SDDGTCRIWDAR 360 (1757)
Q Consensus 313 Dl~tg--~~l~~l~gH~~~Vt-sLafSPdg~~~~~LaSg--s~DGtIrIWDl~ 360 (1757)
++.++ +....+........ .+..+.++.. .++.+ ..++.+.+|+..
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~--l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHY--VVIHLASATTSEVLLLDAE 255 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCE--EEEEEECCccccEEEEECc
Confidence 88888 44444544333333 2333436552 23222 234578888853
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=94.96 E-value=1.2 Score=58.65 Aligned_cols=116 Identities=22% Similarity=0.198 Sum_probs=64.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEe------CCc--eEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCc-E
Q 000268 284 HEGDITDLAVSSNNALVASAS------NDC--IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGT-C 354 (1757)
Q Consensus 284 H~~~VtsLafSPDg~lLASgS------~DG--tIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGt-I 354 (1757)
....+.+++++|+|+.+|... .|. .|.+++. .+.....+.+. ..+.-.|+|++. .|++...... +
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~---~lw~v~dg~~~~ 421 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDAD---AVWVVVDGNTVV 421 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCC---ceEEEecCcceE
Confidence 334688999999999887665 243 4555554 23332333332 378899999976 5555543312 2
Q ss_pred EEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEE
Q 000268 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARV 418 (1757)
Q Consensus 355 rIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrV 418 (1757)
++.+-.....+..+.+... .... .....|..+.|||||..||... +|.|.|
T Consensus 422 ~v~~~~~~gql~~~~vd~g---------e~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 422 RVIRDPATGQLARTPVDAS---------AVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred EEeccCCCceEEEEeccCc---------hhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 3322211111111111000 0000 1245699999999999888765 466666
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=94.83 E-value=2 Score=52.37 Aligned_cols=218 Identities=9% Similarity=0.088 Sum_probs=117.2
Q ss_pred cEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEE---EECCC----CCEEEEeeC----------Cce
Q 000268 353 TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCC---AFNAN----GTVFVTGSS----------DTL 415 (1757)
Q Consensus 353 tIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sl---afSpd----G~~LasGs~----------DG~ 415 (1757)
.|++.|..+...+..+.++. ...+.++ .|..+ ..+|++|+. .|.
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~-------------------~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gr 63 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEP-------------------NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGR 63 (321)
T ss_dssp EEEEEETTTSSEEEEEEEET-------------------TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EE
T ss_pred EEEEEeCCCCeEEEEEECCC-------------------CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcE
Confidence 57788877776665554422 2234433 33332 467777753 289
Q ss_pred EEEecCCCCCCCCCCCCCcceee--ecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeE
Q 000268 416 ARVWNACKPNTDDSDQPNHEIDV--LSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSA 493 (1757)
Q Consensus 416 IrVWDl~t~~~~~s~~~~~~i~~--l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI 493 (1757)
|.+|++... ......+.. -....++|++++-.. +.|+++ ..+.|
T Consensus 64 i~v~~i~~~-----~~~~~~l~~i~~~~~~g~V~ai~~~~----------------------------~~lv~~-~g~~l 109 (321)
T PF03178_consen 64 ILVFEISES-----PENNFKLKLIHSTEVKGPVTAICSFN----------------------------GRLVVA-VGNKL 109 (321)
T ss_dssp EEEEEECSS----------EEEEEEEEEESS-EEEEEEET----------------------------TEEEEE-ETTEE
T ss_pred EEEEEEEcc-----cccceEEEEEEEEeecCcceEhhhhC----------------------------CEEEEe-ecCEE
Confidence 999999652 000111221 123467788877652 244433 35889
Q ss_pred EEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCC-C
Q 000268 494 IIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD-G 572 (1757)
Q Consensus 494 ~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I~IWDl~t-g 572 (1757)
.+|++...+. +. ..........+.++.. .+.+|++|..-..|.++.... +
T Consensus 110 ~v~~l~~~~~------l~---------------------~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~ 160 (321)
T PF03178_consen 110 YVYDLDNSKT------LL---------------------KKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEEN 160 (321)
T ss_dssp EEEEEETTSS------EE---------------------EEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTT
T ss_pred EEEEccCccc------ch---------------------hhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccC
Confidence 9999885330 00 0011111223444443 466999999888888775433 3
Q ss_pred ceEEEEe--CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-------Cc--eEEEEeec-CcceEEE---EEcC--
Q 000268 573 SLVHSLT--GHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE-------GI--PIRIYEIS-RFRLVDG---KFSP-- 635 (1757)
Q Consensus 573 kll~~L~--gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~t-------g~--~l~~l~~~-~~~Vtsl---afSP-- 635 (1757)
..+..+. .....++++.|-+++ ..++.+..+|.|.++.... +. +.....-| ...|+++ .+.|
T Consensus 161 ~~l~~va~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~ 239 (321)
T PF03178_consen 161 NKLILVARDYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRS 239 (321)
T ss_dssp E-EEEEEEESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--S
T ss_pred CEEEEEEecCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecC
Confidence 3233222 234558888888645 5888899999999998752 22 22222222 3356665 5555
Q ss_pred CCC------EEEEEeCCCeEEEEE
Q 000268 636 DGA------SIILSDDVGQLYILN 653 (1757)
Q Consensus 636 DGk------~LAsgs~DG~I~IWd 653 (1757)
.+. .++.++.+|.|.+.-
T Consensus 240 ~~~~~~~~~~i~~~T~~G~Ig~l~ 263 (321)
T PF03178_consen 240 GSSESPNRPQILYGTVDGSIGVLI 263 (321)
T ss_dssp SSS-TTEEEEEEEEETTS-EEEEE
T ss_pred CCCcccccceEEEEecCCEEEEEE
Confidence 222 477888999988543
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.059 Score=71.33 Aligned_cols=105 Identities=22% Similarity=0.360 Sum_probs=77.6
Q ss_pred CCCEEEEEcCCceEEEEecCCCeE-EEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEE
Q 000268 254 SGRYVITGSDDRLVKIWSMETAYC-LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTA 332 (1757)
Q Consensus 254 DG~~LATGS~DGtIkIWDl~tg~~-l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~Vts 332 (1757)
.+..+|.|++.|.|-..|+.+.-. +..=..-.++|++++|+.+|.+++.|-.+|.|.+||+.+++.++.+..|..++++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 355788999999999888764311 1111224679999999999999999999999999999999999999888777776
Q ss_pred EEecCCCCceEEEEEEeCCCcEEEEecC
Q 000268 333 IAFSPRPGSVYQLLSSSDDGTCRIWDAR 360 (1757)
Q Consensus 333 LafSPdg~~~~~LaSgs~DGtIrIWDl~ 360 (1757)
+-+.--.+....++++...|. +|.+.
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 655432111126788877776 67654
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.48 E-value=6.1 Score=46.40 Aligned_cols=253 Identities=12% Similarity=0.134 Sum_probs=135.4
Q ss_pred eEEEEecCCCCceEEEEEEeCCCcE-EEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEE
Q 000268 330 VTAIAFSPRPGSVYQLLSSSDDGTC-RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFV 408 (1757)
Q Consensus 330 VtsLafSPdg~~~~~LaSgs~DGtI-rIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~La 408 (1757)
...|+|+|... +.++.+-.-|+. .++|..+.+....+.... ..+..-.-+|||||.+|.
T Consensus 70 ~Hgi~~~p~~~--ravafARrPGtf~~vfD~~~~~~pv~~~s~~------------------~RHfyGHGvfs~dG~~LY 129 (366)
T COG3490 70 GHGIAFHPALP--RAVAFARRPGTFAMVFDPNGAQEPVTLVSQE------------------GRHFYGHGVFSPDGRLLY 129 (366)
T ss_pred cCCeecCCCCc--ceEEEEecCCceEEEECCCCCcCcEEEeccc------------------CceeecccccCCCCcEEE
Confidence 34678888654 356666666664 578988887665553211 111122346999999998
Q ss_pred EeeC-----CceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCc
Q 000268 409 TGSS-----DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDN 483 (1757)
Q Consensus 409 sGs~-----DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (1757)
+.-. -|.|-|||.+.+ ...+..+..|.-.-..+.+.++| ..
T Consensus 130 ATEndfd~~rGViGvYd~r~~--------fqrvgE~~t~GiGpHev~lm~DG--------------------------rt 175 (366)
T COG3490 130 ATENDFDPNRGVIGVYDAREG--------FQRVGEFSTHGIGPHEVTLMADG--------------------------RT 175 (366)
T ss_pred eecCCCCCCCceEEEEecccc--------cceecccccCCcCcceeEEecCC--------------------------cE
Confidence 7644 378999999632 34556677777777778888876 23
Q ss_pred EEEEcCCCeEEEE-eCCCCCCCccccccccccccc-CCCCCCCCCCCCCCCce--eec--CCCCCeeEEEEcCCCCEEEE
Q 000268 484 IVTCSRDGSAIIW-IPRSRRSHPKAARWTQAYHLK-VPPPPMPPQPPRGGPRQ--RIL--PTPRGVNMIVWSLDNRFVLA 557 (1757)
Q Consensus 484 LvSgS~DGtI~IW-Dl~t~k~~~~~~~w~~~~~l~-~~~~~~~~~~~~~~~~~--~l~--~h~~~VtsVafSPDG~~LaS 557 (1757)
++.+ +|-|..- |..- . .+.+. +.+.........+..+. .+. .+.-.|..++..+||+.++.
T Consensus 176 lvva--nGGIethpdfgR-~----------~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfg 242 (366)
T COG3490 176 LVVA--NGGIETHPDFGR-T----------ELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFG 242 (366)
T ss_pred EEEe--CCceecccccCc-c----------ccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEE
Confidence 3322 1222221 1100 0 00000 00000000001111111 111 23456888888888876655
Q ss_pred EecCCe-----EEEEECCCCceEEEEeC-------CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecC
Q 000268 558 AIMDCR-----ICVWNAADGSLVHSLTG-------HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISR 625 (1757)
Q Consensus 558 Gs~DG~-----I~IWDl~tgkll~~L~g-------H~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~ 625 (1757)
+-..|- -.|=-...|+.+.-+.- -..-|-+|+.+-.++.+.+|.-..+...|||..+|..+.......
T Consensus 243 cQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d 322 (366)
T COG3490 243 CQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD 322 (366)
T ss_pred EEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc
Confidence 432221 11111223444433321 123466788877666677776667778999999998876543111
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000268 626 FRLVDGKFSPDGASIILSDDVGQLYILN 653 (1757)
Q Consensus 626 ~~VtslafSPDGk~LAsgs~DG~I~IWd 653 (1757)
+.-.-+.+.-+++++..|.+.++.
T Consensus 323 ----aaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 323 ----AAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred ----cccceeccCceEEecCCceEEecc
Confidence 122334455566777778887774
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=94.45 E-value=4.8 Score=50.68 Aligned_cols=84 Identities=17% Similarity=0.162 Sum_probs=58.9
Q ss_pred EEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCcc-eEEE-EEcCC----------------CC
Q 000268 577 SLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFR-LVDG-KFSPD----------------GA 638 (1757)
Q Consensus 577 ~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~-Vtsl-afSPD----------------Gk 638 (1757)
.|......+.+|+.+| +++++|+...=|.|.|+|+.++..++.+++-... +.-+ ..... ..
T Consensus 302 ~l~D~~R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l 380 (415)
T PF14655_consen 302 GLPDSKREGESICLSP-SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFAL 380 (415)
T ss_pred eeccCCceEEEEEECC-CCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceE
Confidence 3444455688999999 6888888888899999999999999888765442 1111 11111 12
Q ss_pred EEE-EEeCCCeEEEEECCCCcccc
Q 000268 639 SII-LSDDVGQLYILNTGQGESQK 661 (1757)
Q Consensus 639 ~LA-sgs~DG~I~IWdl~tGe~~~ 661 (1757)
+|+ .+-.-|.|-||.+.+|..+.
T Consensus 381 ~LvIyaprRg~lEvW~~~~g~Rv~ 404 (415)
T PF14655_consen 381 FLVIYAPRRGILEVWSMRQGPRVA 404 (415)
T ss_pred EEEEEeccCCeEEEEecCCCCEEE
Confidence 333 46778999999999887654
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.42 E-value=1.5 Score=57.67 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=21.9
Q ss_pred CCCEEEEEecCC--eEEEEECCCCceEEEEeCCC
Q 000268 551 DNRFVLAAIMDC--RICVWNAADGSLVHSLTGHT 582 (1757)
Q Consensus 551 DG~~LaSGs~DG--~I~IWDl~tgkll~~L~gH~ 582 (1757)
+|+..++|+.+| .+..||..+.+-...-..|.
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccccccchhhhcC
Confidence 788889999888 67778877665443333343
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=94.39 E-value=8.6 Score=46.62 Aligned_cols=161 Identities=17% Similarity=0.193 Sum_probs=82.3
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEec-
Q 000268 281 CRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA- 359 (1757)
Q Consensus 281 L~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl- 359 (1757)
...-.+.+..+..++||++|+++.....+.-|+--...-...-+.-...|..|.|.|++. |......|.|++=+.
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~----lw~~~~Gg~~~~s~~~ 215 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN----LWMLARGGQIQFSDDP 215 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-----EEEEETTTEEEEEE-T
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCC----EEEEeCCcEEEEccCC
Confidence 345567899999999999999987777777888543222333344568899999999975 444558888888761
Q ss_pred CCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeee
Q 000268 360 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVL 439 (1757)
Q Consensus 360 ~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l 439 (1757)
.... ...- +..........+..++|.+++...|+|+... + +.....+ +..+.....
T Consensus 216 ~~~~---~w~~-------------~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~-l-~~S~DgG------ktW~~~~~~ 271 (302)
T PF14870_consen 216 DDGE---TWSE-------------PIIPIKTNGYGILDLAYRPPNEIWAVGGSGT-L-LVSTDGG------KTWQKDRVG 271 (302)
T ss_dssp TEEE---EE----------------B-TTSS--S-EEEEEESSSS-EEEEESTT--E-EEESSTT------SS-EE-GGG
T ss_pred CCcc---cccc-------------ccCCcccCceeeEEEEecCCCCEEEEeCCcc-E-EEeCCCC------ccceECccc
Confidence 1111 1100 0001112344589999999988888776543 3 2223222 223333333
Q ss_pred cCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEE
Q 000268 440 SGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW 496 (1757)
Q Consensus 440 ~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IW 496 (1757)
..-...+..|.|.+. +.-.+.+.+|.|.-|
T Consensus 272 ~~~~~n~~~i~f~~~---------------------------~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 272 ENVPSNLYRIVFVNP---------------------------DKGFVLGQDGVLLRY 301 (302)
T ss_dssp TTSSS---EEEEEET---------------------------TEEEEE-STTEEEEE
T ss_pred cCCCCceEEEEEcCC---------------------------CceEEECCCcEEEEe
Confidence 344556777887653 355666778887665
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=94.24 E-value=1.8 Score=44.37 Aligned_cols=101 Identities=18% Similarity=0.164 Sum_probs=68.1
Q ss_pred eeEEEEcC---CC-CEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE
Q 000268 543 VNMIVWSL---DN-RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 618 (1757)
Q Consensus 543 VtsVafSP---DG-~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l 618 (1757)
|+++++.. || .-|++|+.|..|+||+- ..++..+.. .+.|++|+-.. . ..++.+-.+|+|-+|+- ...+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~-~-~~F~Y~l~NGTVGvY~~--~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLG-G-GRFAYALANGTVGVYDR--SQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcC-C-CEEEEEecCCEEEEEeC--ccee
Confidence 45565543 33 47999999999999984 467777764 45577777765 3 45667888999999975 4555
Q ss_pred EEEeecCcceEEEEE-cCC--C-CEEEEEeCCCeEEE
Q 000268 619 RIYEISRFRLVDGKF-SPD--G-ASIILSDDVGQLYI 651 (1757)
Q Consensus 619 ~~l~~~~~~Vtslaf-SPD--G-k~LAsgs~DG~I~I 651 (1757)
+..+..+ .++++++ ..+ | .-|++|-.+|.|-+
T Consensus 75 WRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 75 WRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 5555333 3555544 333 3 36888888888743
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.084 Score=59.69 Aligned_cols=103 Identities=17% Similarity=0.091 Sum_probs=65.9
Q ss_pred CcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceee-cCCCCCeeEEEEcCCCCEEEEEec
Q 000268 482 DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI-LPTPRGVNMIVWSLDNRFVLAAIM 560 (1757)
Q Consensus 482 ~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l-~~h~~~VtsVafSPDG~~LaSGs~ 560 (1757)
..+++|+.+|.|.+|+..... ....+. .......+.|.--.++.+..+++.
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g----------------------------~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~ 122 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEG----------------------------AHSDRVCSGEESIDLGIPNGRDSSLGCVGAQ 122 (238)
T ss_pred ceEEeecccceEEEecCCccc----------------------------hHHHhhhcccccceeccccccccceeEEecc
Confidence 589999999999999776210 000011 111122333444456668888999
Q ss_pred CCeEEEEECCCCceEEEEeCCC-CCeEEEEEecCCCcEEEEE--eCCCcEEEEeCC
Q 000268 561 DCRICVWNAADGSLVHSLTGHT-ESTYVLDVHPFNPRIAMSA--GYDGKTIVWDIW 613 (1757)
Q Consensus 561 DG~I~IWDl~tgkll~~L~gH~-~~VtsLafSPdd~~lLaSg--s~DG~IrIWDl~ 613 (1757)
||.|+.|++.-++.+...-.|. ..+..+..+. ..++++.+ |.|..++.|++.
T Consensus 123 dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 123 DGRIRACNIKPNKVLGYVGQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred CCceeeeccccCceeeeeccccCCCcceeEEec-CCceEEeeccccchhhhhcchh
Confidence 9999999999888888777777 4444444444 44555555 666677777664
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=94.06 E-value=2.7 Score=49.45 Aligned_cols=170 Identities=9% Similarity=-0.039 Sum_probs=97.9
Q ss_pred cceeEEEEccCCC-CEEEEEECCCCCEEEEEcCCc--eEEEEecCCCeEEEEEecCC-CCeEEEEEcCCCCEEEEEeCCc
Q 000268 232 KMQNIKRVRGHRN-AVYCAIFDRSGRYVITGSDDR--LVKIWSMETAYCLASCRGHE-GDITDLAVSSNNALVASASNDC 307 (1757)
Q Consensus 232 ~~k~l~tL~GH~~-~V~~VaFSPDG~~LATGS~DG--tIkIWDl~tg~~l~tL~gH~-~~VtsLafSPDg~lLASgS~DG 307 (1757)
..+.++++..... -...+.|..+|.++-+.+.-| .|+.+|+.+|+.+....-.. ----.|++. ++++..-.-.++
T Consensus 32 ~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~ 110 (264)
T PF05096_consen 32 SYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEG 110 (264)
T ss_dssp EEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSS
T ss_pred eeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCC
Confidence 3456666653333 355788878888888777655 89999999999877654221 112233333 333444445689
Q ss_pred eEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCC
Q 000268 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSS 387 (1757)
Q Consensus 308 tIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~ 387 (1757)
...+||..+.+.+..+.- .+.=+.++ .++. .|+.......|.++|..+.+....+.+.....
T Consensus 111 ~~f~yd~~tl~~~~~~~y-~~EGWGLt--~dg~---~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~------------ 172 (264)
T PF05096_consen 111 TGFVYDPNTLKKIGTFPY-PGEGWGLT--SDGK---RLIMSDGSSRLYFLDPETFKEVRTIQVTDNGR------------ 172 (264)
T ss_dssp EEEEEETTTTEEEEEEE--SSS--EEE--ECSS---CEEEE-SSSEEEEE-TTT-SEEEEEE-EETTE------------
T ss_pred eEEEEccccceEEEEEec-CCcceEEE--cCCC---EEEEECCccceEEECCcccceEEEEEEEECCE------------
Confidence 999999999988888763 35667777 3444 56666667789999998887766665432111
Q ss_pred CCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCC
Q 000268 388 AGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKP 424 (1757)
Q Consensus 388 ~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~ 424 (1757)
.-..+.-+-|- +|...|=.-....|...|..++
T Consensus 173 ---pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG 205 (264)
T PF05096_consen 173 ---PVSNLNELEYI-NGKIYANVWQTDRIVRIDPETG 205 (264)
T ss_dssp ---E---EEEEEEE-TTEEEEEETTSSEEEEEETTT-
T ss_pred ---ECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCC
Confidence 11224445454 5554444444455555565544
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.78 E-value=5.1 Score=47.47 Aligned_cols=162 Identities=9% Similarity=0.076 Sum_probs=101.2
Q ss_pred EEEEEECCCCCEEEEEcCCceEEEEecCCC--eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCceEEe
Q 000268 246 VYCAIFDRSGRYVITGSDDRLVKIWSMETA--YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL 323 (1757)
Q Consensus 246 V~~VaFSPDG~~LATGS~DGtIkIWDl~tg--~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l~~l 323 (1757)
+.|+-|...+.+...+... +-+|...=. -..+.+.|-...|.++.|+|+.+.|++......-.||=...|..++++
T Consensus 46 f~~a~~k~~~~~~~~~~r~--~~~~l~~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirti 123 (316)
T COG3204 46 FPCAWFKAGQTNGLDLSRY--IARYLLEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTI 123 (316)
T ss_pred eeeEEEeccccccccccch--hhhccCCceEEEeccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEe
Confidence 4455454444444444444 445543211 111123455666999999999999999888888888877889888876
Q ss_pred cC-CCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECC
Q 000268 324 RG-HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA 402 (1757)
Q Consensus 324 ~g-H~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSp 402 (1757)
.- .-...-.|.+..++. ++++--.++.+.++.+........+... ..+.......+...-.++|.|
T Consensus 124 PL~g~~DpE~Ieyig~n~---fvi~dER~~~l~~~~vd~~t~~~~~~~~----------~i~L~~~~k~N~GfEGlA~d~ 190 (316)
T COG3204 124 PLTGFSDPETIEYIGGNQ---FVIVDERDRALYLFTVDADTTVISAKVQ----------KIPLGTTNKKNKGFEGLAWDP 190 (316)
T ss_pred cccccCChhHeEEecCCE---EEEEehhcceEEEEEEcCCccEEeccce----------EEeccccCCCCcCceeeecCC
Confidence 42 123445677877775 6777777888888877655332222110 000111112255678899999
Q ss_pred CCCEEEEeeCCceEEEecCC
Q 000268 403 NGTVFVTGSSDTLARVWNAC 422 (1757)
Q Consensus 403 dG~~LasGs~DG~IrVWDl~ 422 (1757)
....|.++-.-.-+.||.+.
T Consensus 191 ~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 191 VDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred CCceEEEEEccCCcEEEEEe
Confidence 88888888777777777764
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=93.65 E-value=2.5 Score=51.08 Aligned_cols=156 Identities=16% Similarity=0.184 Sum_probs=80.9
Q ss_pred ccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECC-CCC
Q 000268 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP-DGL 318 (1757)
Q Consensus 240 ~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~-tg~ 318 (1757)
.+-.+.+..+..++||++||+++.-....-|+--.......-+.-...|..|.|.|++.+.+.+ ..|.|++=+.. .+.
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 3445789999999999999999887777788864322333333456889999999998766654 78888887722 111
Q ss_pred c----eEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcc
Q 000268 319 P----ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1757)
Q Consensus 319 ~----l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~ 394 (1757)
. +..+....-.+..++|.+++. ..+ ++..|++. .....|+.=.+. .........
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~---~wa-~gg~G~l~-~S~DgGktW~~~-----------------~~~~~~~~n 277 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNE---IWA-VGGSGTLL-VSTDGGKTWQKD-----------------RVGENVPSN 277 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS----EEE-EESTT-EE-EESSTTSS-EE------------------GGGTTSSS-
T ss_pred ccccccCCcccCceeeEEEEecCCCC---EEE-EeCCccEE-EeCCCCccceEC-----------------ccccCCCCc
Confidence 1 111112233488999998864 444 55555443 333444321111 111123445
Q ss_pred eEEEEECCCCCEEEEeeCCceEEEe
Q 000268 395 IFCCAFNANGTVFVTGSSDTLARVW 419 (1757)
Q Consensus 395 V~slafSpdG~~LasGs~DG~IrVW 419 (1757)
+..|.|....+-+|.| .+|.|.-|
T Consensus 278 ~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 278 LYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp --EEEEEETTEEEEE--STTEEEEE
T ss_pred eEEEEEcCCCceEEEC-CCcEEEEe
Confidence 7788888766666665 57776554
|
|
| >COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.024 Score=70.53 Aligned_cols=89 Identities=20% Similarity=0.321 Sum_probs=80.4
Q ss_pred ccccccccccccccccCCCccccCCCCCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHH
Q 000268 1661 RVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLV 1740 (1757)
Q Consensus 1661 ~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~~~s~i~~~a~~l~~~~ 1740 (1757)
.....|.+..+......|+|++.|..+|++.|.+.+|.+.||+..+++..|..++++||.-||++...+++.+..+.+++
T Consensus 277 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (371)
T COG5076 277 AHVGAWPFLRPVSDEEVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNANVLEDFV 356 (371)
T ss_pred cccccccccccCCcccccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhhhccchhhhH
Confidence 34556777777888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCC
Q 000268 1741 TRTLSSLKA 1749 (1757)
Q Consensus 1741 ~~~l~~~~~ 1749 (1757)
..+.+-.+.
T Consensus 357 ~~~~~~~~~ 365 (371)
T COG5076 357 IKKTRLIRE 365 (371)
T ss_pred hhhhhhhhc
Confidence 887765543
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.53 E-value=3.9 Score=53.97 Aligned_cols=147 Identities=14% Similarity=0.135 Sum_probs=79.1
Q ss_pred CCCCCEEEEEcCC------ceEEEEecCCCeEEEEEec-CCCCeEEEEEcCCCCEEEEEeCC------ceEEEEECCCCC
Q 000268 252 DRSGRYVITGSDD------RLVKIWSMETAYCLASCRG-HEGDITDLAVSSNNALVASASND------CIIRVWRLPDGL 318 (1757)
Q Consensus 252 SPDG~~LATGS~D------GtIkIWDl~tg~~l~tL~g-H~~~VtsLafSPDg~lLASgS~D------GtIrVWDl~tg~ 318 (1757)
+..+..++.||.+ ..|..+|..++.......- +...-.++++. +|.+.++|+.| .++..||..+++
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 4446667777766 3788899888754433221 22223344444 56788888888 357778877664
Q ss_pred ce--EEecCCCCceEEEEecCCCCceEEEEEEeCCCc-----EEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCC
Q 000268 319 PI--SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGT-----CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQ 391 (1757)
Q Consensus 319 ~l--~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGt-----IrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~ 391 (1757)
-. ..+........ ++.. +|. ..++||.||. |-.||..+.++...-.. ...
T Consensus 361 W~~~a~M~~~R~~~~-v~~l-~g~---iYavGG~dg~~~l~svE~YDp~~~~W~~va~m------------------~~~ 417 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFG-VAVL-DGK---LYAVGGFDGEKSLNSVECYDPVTNKWTPVAPM------------------LTR 417 (571)
T ss_pred eeccCCccCccccce-eEEE-CCE---EEEEeccccccccccEEEecCCCCcccccCCC------------------Ccc
Confidence 22 22221111111 2222 222 7788888864 66677776654322111 001
Q ss_pred CcceEEEEECCCCCEEEEeeCCc------eEEEecCCCC
Q 000268 392 SHQIFCCAFNANGTVFVTGSSDT------LARVWNACKP 424 (1757)
Q Consensus 392 ~~~V~slafSpdG~~LasGs~DG------~IrVWDl~t~ 424 (1757)
...+ .+..-+|.+.++||.++ ++..||..+.
T Consensus 418 r~~~--gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~ 454 (571)
T KOG4441|consen 418 RSGH--GVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN 454 (571)
T ss_pred eeee--EEEEECCEEEEEcCcCCCccccceEEEEcCCCC
Confidence 1111 12223788888888654 4667777653
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.45 E-value=3.2 Score=54.81 Aligned_cols=103 Identities=13% Similarity=0.191 Sum_probs=57.1
Q ss_pred CCCEEEEEeCC------ceEEEEECCCCCce--EEecCCCCceEEEEecCCCCceEEEEEEeCC------CcEEEEecCC
Q 000268 296 NNALVASASND------CIIRVWRLPDGLPI--SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD------GTCRIWDARY 361 (1757)
Q Consensus 296 Dg~lLASgS~D------GtIrVWDl~tg~~l--~~l~gH~~~VtsLafSPdg~~~~~LaSgs~D------GtIrIWDl~t 361 (1757)
.+.+++.|+.. ..|..+|..++.-. ..+. ....-.++++..+ . ..++||.| .++..||..+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~~~-~---lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVLNG-K---LYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEECC-E---EEEEccccCCCcccceEEEecCCC
Confidence 34455566555 35778888776322 2222 2233455566554 2 78888888 3567788877
Q ss_pred CCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCc-----eEEEecCCC
Q 000268 362 SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDT-----LARVWNACK 423 (1757)
Q Consensus 362 g~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG-----~IrVWDl~t 423 (1757)
++....-.+ ....... .++ .-+|.+.|+||.|| +|-.||..+
T Consensus 359 ~~W~~~a~M------------------~~~R~~~-~v~-~l~g~iYavGG~dg~~~l~svE~YDp~~ 405 (571)
T KOG4441|consen 359 NQWTPVAPM------------------NTKRSDF-GVA-VLDGKLYAVGGFDGEKSLNSVECYDPVT 405 (571)
T ss_pred CceeccCCc------------------cCccccc-eeE-EECCEEEEEeccccccccccEEEecCCC
Confidence 764332111 0011111 111 12788999999886 466777754
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.43 E-value=2.3 Score=49.74 Aligned_cols=181 Identities=17% Similarity=0.120 Sum_probs=105.0
Q ss_pred EEEcCCCCEEEE-EecCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCc-EEEEeCCCCceEEEEee
Q 000268 546 IVWSLDNRFVLA-AIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGK-TIVWDIWEGIPIRIYEI 623 (1757)
Q Consensus 546 VafSPDG~~LaS-Gs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~-IrIWDl~tg~~l~~l~~ 623 (1757)
....+||++-++ .+.+ |+++..+.- ...-..|+|+|.-++-++-+-.-|+ ..++|...++...++..
T Consensus 41 af~~~dgs~g~a~~~ea----------Gk~v~~~~l-paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s 109 (366)
T COG3490 41 AFDARDGSFGAATLSEA----------GKIVFATAL-PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVS 109 (366)
T ss_pred eeeccCCceeEEEEccC----------Cceeeeeec-ccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEec
Confidence 334567776444 3333 444443321 1122357888877777777766665 46899988887777654
Q ss_pred cCcce--EEEEEcCCCCEEEEEe-----CCCeEEEEECCCCcc-------ccccccceeecCCCccEEEccCCceeec-c
Q 000268 624 SRFRL--VDGKFSPDGASIILSD-----DVGQLYILNTGQGES-------QKDAKYDQFFLGDYRPLVQDTYGNVLDQ-E 688 (1757)
Q Consensus 624 ~~~~V--tslafSPDGk~LAsgs-----~DG~I~IWdl~tGe~-------~~~~~~~~~fs~D~r~Li~d~~g~vlD~-~ 688 (1757)
..+.= -.-.|||||.+|.+.- .-|.|-|||...+=. ...-+-++.+.+||+.|+....|--... .
T Consensus 110 ~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdf 189 (366)
T COG3490 110 QEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDF 189 (366)
T ss_pred ccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceeccccc
Confidence 33322 2358999999999873 347899999875411 2244567789999999876654432110 0
Q ss_pred cccccCcCCCCCc--ccC-CCCCCCCCcchhhhh--cccccccceEECCCCCeEEEe
Q 000268 689 TQLAPHRRNLQDP--LCD-SAMIPYPEPYQTMYQ--QRRLGALGIEWRPSSLKLAVG 740 (1757)
Q Consensus 689 tql~phl~~l~~~--L~D-~~~~p~p~~~Q~l~~--~r~~~v~~lAfSPDG~~LAvg 740 (1757)
....-++..|++- |.| ..+.-... ...| .+.+.+..++.-+||+.++--
T Consensus 190 gR~~lNldsMePSlvlld~atG~liek---h~Lp~~l~~lSiRHld~g~dgtvwfgc 243 (366)
T COG3490 190 GRTELNLDSMEPSLVLLDAATGNLIEK---HTLPASLRQLSIRHLDIGRDGTVWFGC 243 (366)
T ss_pred CccccchhhcCccEEEEeccccchhhh---ccCchhhhhcceeeeeeCCCCcEEEEE
Confidence 1111122223332 333 22222111 1122 456778899999999877754
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.38 E-value=6.6 Score=46.57 Aligned_cols=171 Identities=11% Similarity=0.136 Sum_probs=113.6
Q ss_pred EccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEec-CCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCC
Q 000268 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRG-HEGDITDLAVSSNNALVASASNDCIIRVWRLPDG 317 (1757)
Q Consensus 239 L~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~g-H~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg 317 (1757)
+.|-...|.++.|+|+.+.|++......-.||=...|..+.++.- .-...-.|.+..+|+++++--.++.+.++.+..+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 445556699999999999999998888888887788999998752 1334567788888888888878899999887655
Q ss_pred CceEEec---------CC-CCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCC
Q 000268 318 LPISVLR---------GH-TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSS 387 (1757)
Q Consensus 318 ~~l~~l~---------gH-~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~ 387 (1757)
..+..+. .+ ....-.++|.|... .|+.+-.-.-+.||.+..+.-...... . ..+...
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~---~l~~aKEr~P~~I~~~~~~~~~l~~~~--~--------~~~~~~ 227 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDH---RLFVAKERNPIGIFEVTQSPSSLSVHA--S--------LDPTAD 227 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCc---eEEEEEccCCcEEEEEecCCccccccc--c--------cCcccc
Confidence 3222111 12 45678899999876 777887777788887663321111000 0 000001
Q ss_pred CCCCCcceEEEEECC-CCCEEEEeeCCceEEEecCC
Q 000268 388 AGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNAC 422 (1757)
Q Consensus 388 ~~~~~~~V~slafSp-dG~~LasGs~DG~IrVWDl~ 422 (1757)
..-.-..|.++.|++ .+.+++.+..++.+...|..
T Consensus 228 ~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 228 RDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred cceEeeccccceecCCCCcEEEEecCCceEEEEecC
Confidence 111223467788886 55667777777777777763
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.33 E-value=9.2 Score=43.84 Aligned_cols=46 Identities=7% Similarity=0.038 Sum_probs=41.1
Q ss_pred EEEcCCCCEEEEEecCCeEEEEECCCCceEEEEeCCCCCeEEEEEe
Q 000268 546 IVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVH 591 (1757)
Q Consensus 546 VafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH~~~VtsLafS 591 (1757)
+++..+|.+.++.-..++|..+|..+|+.+.++.-....|++++|-
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 4556788998988899999999999999999999889999999994
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.31 E-value=43 Score=45.57 Aligned_cols=118 Identities=17% Similarity=0.189 Sum_probs=75.4
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEE-eCCCCCeEEEEEecC--CC---cEEEEEeCCCcEEEEe-CCC
Q 000268 542 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL-TGHTESTYVLDVHPF--NP---RIAMSAGYDGKTIVWD-IWE 614 (1757)
Q Consensus 542 ~VtsVafSPDG~~LaSGs~DG~I~IWDl~tgkll~~L-~gH~~~VtsLafSPd--d~---~lLaSgs~DG~IrIWD-l~t 614 (1757)
.++..+.+.+...++.++.++.+...++..+.+...- ..-...|.|+.++|. +. ++++.|.++..+.+-- +.+
T Consensus 489 ~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd 568 (1096)
T KOG1897|consen 489 KITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPD 568 (1096)
T ss_pred ceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCC
Confidence 4555556667777888888888888888776633222 123457899999975 33 3888888877665543 333
Q ss_pred CceEEEEeec----CcceEEEEEcCCCCEEEEEeCCCeEEEE--ECCCCcc
Q 000268 615 GIPIRIYEIS----RFRLVDGKFSPDGASIILSDDVGQLYIL--NTGQGES 659 (1757)
Q Consensus 615 g~~l~~l~~~----~~~VtslafSPDGk~LAsgs~DG~I~IW--dl~tGe~ 659 (1757)
...+...... ...|.-..|--|+.+|.++..||.+.-| |..+|..
T Consensus 569 ~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~l 619 (1096)
T KOG1897|consen 569 LILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQL 619 (1096)
T ss_pred cceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceE
Confidence 4333333211 1245556777889999999999988654 5566643
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=92.90 E-value=3.2 Score=49.07 Aligned_cols=155 Identities=19% Similarity=0.165 Sum_probs=91.8
Q ss_pred CEEEEEECCCCCEEEEEc---CCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEE-CCCCCce
Q 000268 245 AVYCAIFDRSGRYVITGS---DDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR-LPDGLPI 320 (1757)
Q Consensus 245 ~V~~VaFSPDG~~LATGS---~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWD-l~tg~~l 320 (1757)
.+...+++++|..+|... ....+.++... .....+. ....+..-.|++++...+....+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999887665 33456666543 3222221 223788889999988777766666777774 3344322
Q ss_pred --EEec-CCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCcc-ceeecCCCCccccCCCCCCCCCCCCCCcceE
Q 000268 321 --SVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS-PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF 396 (1757)
Q Consensus 321 --~~l~-gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~-~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~ 396 (1757)
..-. .-.+.|+.+.+||||....+++....++.|.+--+....-- .... ..+..........+.
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l------------~~~~~~~~~~~~~v~ 169 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRL------------TGPRRVAPPLLSDVT 169 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCccee------------ccceEecccccCcce
Confidence 1111 11128999999999984433333445677777655422211 1110 011111122355789
Q ss_pred EEEECCCCCEEEEeeCCc
Q 000268 397 CCAFNANGTVFVTGSSDT 414 (1757)
Q Consensus 397 slafSpdG~~LasGs~DG 414 (1757)
.++|.+++.+++.+...+
T Consensus 170 ~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 170 DVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred eeeecCCCEEEEEeCCCC
Confidence 999999998777766543
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=92.89 E-value=4.1 Score=55.00 Aligned_cols=111 Identities=10% Similarity=-0.012 Sum_probs=71.9
Q ss_pred CeeEEEEcCCCCEEEEEe-----cCCeEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCC-----CcEEEEe
Q 000268 542 GVNMIVWSLDNRFVLAAI-----MDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYD-----GKTIVWD 611 (1757)
Q Consensus 542 ~VtsVafSPDG~~LaSGs-----~DG~I~IWDl~tgkll~~L~gH~~~VtsLafSPdd~~lLaSgs~D-----G~IrIWD 611 (1757)
.+..+.|||||++|+.+. ....|++.|+.+|..+...-... -..++|++++..++++...+ ..|..++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 466788999999988754 33459999999887443221111 15699999666676665433 3688889
Q ss_pred CCCC--ceEEEEeecCcceE-EEEEcCCCCEEEEE---eCCCeEEEEEC
Q 000268 612 IWEG--IPIRIYEISRFRLV-DGKFSPDGASIILS---DDVGQLYILNT 654 (1757)
Q Consensus 612 l~tg--~~l~~l~~~~~~Vt-slafSPDGk~LAsg---s~DG~I~IWdl 654 (1757)
+.++ +....+........ .+..+.|+++++.. ..++.+++|+.
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 9888 44445543333333 34445599987754 33468899884
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=92.83 E-value=22 Score=42.00 Aligned_cols=146 Identities=17% Similarity=0.109 Sum_probs=82.3
Q ss_pred CeEEEEEcCCCCEEEEEe---CCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEe-cCCC
Q 000268 287 DITDLAVSSNNALVASAS---NDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD-ARYS 362 (1757)
Q Consensus 287 ~VtsLafSPDg~lLASgS---~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWD-l~tg 362 (1757)
.+.+.+++++++.+|... ....+.++.. +.....+. ....++.-.|.+++. ..+....+...+++. ...+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~---~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGW---VWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCC---EEEEEcCCCceEEEEecCCC
Confidence 789999999999887765 3345555553 33333321 223778889999965 444445555566663 3333
Q ss_pred CccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEee---CCceEEEecCCCCCCCCCCCCCcceeee
Q 000268 363 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS---SDTLARVWNACKPNTDDSDQPNHEIDVL 439 (1757)
Q Consensus 363 ~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs---~DG~IrVWDl~t~~~~~s~~~~~~i~~l 439 (1757)
...... +. .......|..+.+||||..+|... .++.|.|--+..............+...
T Consensus 99 ~~~~~~-v~----------------~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~ 161 (253)
T PF10647_consen 99 TGEPVE-VD----------------WPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVA 161 (253)
T ss_pred cceeEE-ec----------------ccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEec
Confidence 322111 10 000111799999999999887665 3567776655322111011111222333
Q ss_pred cCCCCCceEEEEccCc
Q 000268 440 SGHENDVNYVQFSGCA 455 (1757)
Q Consensus 440 ~gH~~~V~sLafSpdg 455 (1757)
......+..+.|.+++
T Consensus 162 ~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 162 PPLLSDVTDVAWSDDS 177 (253)
T ss_pred ccccCcceeeeecCCC
Confidence 3445678889998775
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.31 Score=64.90 Aligned_cols=100 Identities=9% Similarity=0.153 Sum_probs=74.6
Q ss_pred CCCCEEEEEecCCeEEEEECCCC-ceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCcce
Q 000268 550 LDNRFVLAAIMDCRICVWNAADG-SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRL 628 (1757)
Q Consensus 550 PDG~~LaSGs~DG~I~IWDl~tg-kll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~V 628 (1757)
-.+.+++.|+..|.|...|.... .+.+.=..-.++|++++|+. ++++++.|-.+|.|.+||+..++.++.+..+..+.
T Consensus 97 ~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 97 IVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPV 175 (1206)
T ss_pred eeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCcc
Confidence 35667889999999998887542 11122223457899999988 78888889999999999999999999988666554
Q ss_pred EE---EEEcCCCCEEEEEeCCCeEE
Q 000268 629 VD---GKFSPDGASIILSDDVGQLY 650 (1757)
Q Consensus 629 ts---lafSPDGk~LAsgs~DG~I~ 650 (1757)
+. +.+..++..+.+++..|.++
T Consensus 176 t~vi~v~~t~~nS~llt~D~~Gsf~ 200 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTSDTGGSFW 200 (1206)
T ss_pred ceEEEEEEeCCCcEEEEccCCCceE
Confidence 44 45566666777888777643
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=92.44 E-value=12 Score=51.08 Aligned_cols=102 Identities=18% Similarity=0.275 Sum_probs=65.2
Q ss_pred CCeEEEEECCCCceEEEEeCC---------CCC--------e-EEEEEecCCCcEEEEE-----------------eCCC
Q 000268 561 DCRICVWNAADGSLVHSLTGH---------TES--------T-YVLDVHPFNPRIAMSA-----------------GYDG 605 (1757)
Q Consensus 561 DG~I~IWDl~tgkll~~L~gH---------~~~--------V-tsLafSPdd~~lLaSg-----------------s~DG 605 (1757)
+|.|+-+|+.+|+++..+..- .+. + ..+++.|..+.+++-. -..+
T Consensus 335 ~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~ 414 (764)
T TIGR03074 335 SGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSS 414 (764)
T ss_pred CcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccc
Confidence 688999999999999877521 011 1 1233333222222211 1235
Q ss_pred cEEEEeCCCCceEEEEeecCcceEE---------EEEcC-CCC---EEEEEeCCCeEEEEECCCCccccc
Q 000268 606 KTIVWDIWEGIPIRIYEISRFRLVD---------GKFSP-DGA---SIILSDDVGQLYILNTGQGESQKD 662 (1757)
Q Consensus 606 ~IrIWDl~tg~~l~~l~~~~~~Vts---------lafSP-DGk---~LAsgs~DG~I~IWdl~tGe~~~~ 662 (1757)
.|.-.|+.+|+....++..+..+.+ +.+.- +|+ .|+.++.+|.++++|..+|+.+-.
T Consensus 415 slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 415 SLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred eEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 6777899999999988753332222 22333 674 788899999999999999987653
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.32 Score=55.17 Aligned_cols=105 Identities=10% Similarity=-0.010 Sum_probs=64.3
Q ss_pred CCCEEEEEecCCeEEEEECCC-CceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecC-cce
Q 000268 551 DNRFVLAAIMDCRICVWNAAD-GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISR-FRL 628 (1757)
Q Consensus 551 DG~~LaSGs~DG~I~IWDl~t-gkll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~-~~V 628 (1757)
-+..+++|+.+|.|++|...- |.....+..-...|-++...-.++.+..+++.||.|+.|++.-++.+.....|. .++
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~ 148 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG 148 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence 356789999999999999852 111111222223333333332344588899999999999998888877766555 344
Q ss_pred EEEEEcCCCCEEEEE--eCCCeEEEEECC
Q 000268 629 VDGKFSPDGASIILS--DDVGQLYILNTG 655 (1757)
Q Consensus 629 tslafSPDGk~LAsg--s~DG~I~IWdl~ 655 (1757)
..+..+..+++|+.+ +.+..+..|++.
T Consensus 149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 149 EELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ceeEEecCCceEEeeccccchhhhhcchh
Confidence 444444445555554 445555555554
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=92.13 E-value=37 Score=41.84 Aligned_cols=75 Identities=19% Similarity=0.193 Sum_probs=43.8
Q ss_pred CceeecCCCCCeeEEEEcC-------CCCEEEEEecCCeEEEEECCCCceEE---E-EeCCCCCeEEEEEecCCCcEEEE
Q 000268 532 PRQRILPTPRGVNMIVWSL-------DNRFVLAAIMDCRICVWNAADGSLVH---S-LTGHTESTYVLDVHPFNPRIAMS 600 (1757)
Q Consensus 532 ~~~~l~~h~~~VtsVafSP-------DG~~LaSGs~DG~I~IWDl~tgkll~---~-L~gH~~~VtsLafSPdd~~lLaS 600 (1757)
+...+..| ..++.+.|-. .|.+|++.-..+.|....+..+..+. . +......+..|++.| ++.+.++
T Consensus 245 P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p-DG~Lyv~ 322 (331)
T PF07995_consen 245 PVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP-DGALYVS 322 (331)
T ss_dssp -SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET-TSEEEEE
T ss_pred cceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC-CCeEEEE
Confidence 33333333 5566666643 56677777767788888886553322 2 233444789999999 5666666
Q ss_pred EeCCCcEE
Q 000268 601 AGYDGKTI 608 (1757)
Q Consensus 601 gs~DG~Ir 608 (1757)
...+|.|.
T Consensus 323 ~d~~G~iy 330 (331)
T PF07995_consen 323 DDSDGKIY 330 (331)
T ss_dssp E-TTTTEE
T ss_pred ECCCCeEe
Confidence 66777764
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.95 E-value=1.8 Score=57.03 Aligned_cols=64 Identities=11% Similarity=0.094 Sum_probs=36.3
Q ss_pred CCCEEEEEcCC------ceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCc-----eEEEEECCCC
Q 000268 254 SGRYVITGSDD------RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDC-----IIRVWRLPDG 317 (1757)
Q Consensus 254 DG~~LATGS~D------GtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DG-----tIrVWDl~tg 317 (1757)
++...+.||.+ ..+..||..+......-.-....-...+..-+|++.+.||.++ +|.+||..+.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~ 377 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDD 377 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCC
Confidence 56777777753 3577888877654322111111111112223677778887753 4888998765
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.54 E-value=8.6 Score=47.38 Aligned_cols=153 Identities=13% Similarity=0.072 Sum_probs=88.2
Q ss_pred CCCEEEEEECCCCCEEEEEcCCceEEE-EecCCCe-EEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCce
Q 000268 243 RNAVYCAIFDRSGRYVITGSDDRLVKI-WSMETAY-CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI 320 (1757)
Q Consensus 243 ~~~V~~VaFSPDG~~LATGS~DGtIkI-WDl~tg~-~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~l 320 (1757)
.+.++++.+.+++.++++|.. |.+.. ++- .++ ....-..-...++++++.++++.+++| ..|.+++=....|..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSR-GNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeCC-ceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 457899999999988877654 54432 332 222 222223445689999999999877765 4576654333444332
Q ss_pred EEecC----CCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceE
Q 000268 321 SVLRG----HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF 396 (1757)
Q Consensus 321 ~~l~g----H~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~ 396 (1757)
..... ....+.+++|.+++. ++.++.+|.|.. ....++.-... ...........
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~----~~~~G~~G~v~~-S~d~G~tW~~~-----------------~~~~~~~~~~~ 306 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGE----IWAGGGNGTLLV-SKDGGKTWEKD-----------------PVGEEVPSNFY 306 (334)
T ss_pred ccccCCccccccceeeEEEcCCCC----EEEEcCCCeEEE-eCCCCCCCeEC-----------------CcCCCCCcceE
Confidence 22111 124578899998764 566667775543 33333311111 00011123577
Q ss_pred EEEECCCCCEEEEeeCCceEEEecC
Q 000268 397 CCAFNANGTVFVTGSSDTLARVWNA 421 (1757)
Q Consensus 397 slafSpdG~~LasGs~DG~IrVWDl 421 (1757)
.+.|..++..+++| ..|.|..|+-
T Consensus 307 ~~~~~~~~~~~~~G-~~G~il~~~~ 330 (334)
T PRK13684 307 KIVFLDPEKGFVLG-QRGVLLRYVG 330 (334)
T ss_pred EEEEeCCCceEEEC-CCceEEEecC
Confidence 88888777766654 5788877754
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.51 E-value=5.5 Score=50.14 Aligned_cols=132 Identities=13% Similarity=0.171 Sum_probs=87.9
Q ss_pred EEEEEeCCceEEEEECCCCCceEEecCCCCceEEEEecCCCCceE----EEEEEeCCCcEEEEecCCCCccceeecCCCC
Q 000268 299 LVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVY----QLLSSSDDGTCRIWDARYSQFSPRIYIPRPS 374 (1757)
Q Consensus 299 lLASgS~DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~----~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~ 374 (1757)
+|.++.....|+-.|++.|+.+....-|.. |+-+.+.|+.+... .-+.|-.+..|+-||.+-...- .+.....
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~~~q~- 424 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLAVVQS- 424 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eeeeeec-
Confidence 334555566788889999999999887766 88888888865321 2245667888999998733221 1111000
Q ss_pred ccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccC
Q 000268 375 DAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 454 (1757)
Q Consensus 375 ~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpd 454 (1757)
..........|++-..+| +||+|+.+|.|++||-. + ......+.+-..+|..|..+.+
T Consensus 425 ------------kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri-~--------~~AKTAlPgLG~~I~hVdvtad 482 (644)
T KOG2395|consen 425 ------------KQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRI-G--------RRAKTALPGLGDAIKHVDVTAD 482 (644)
T ss_pred ------------cccccccccceeeecCCc-eEEEeecCCcEEeehhh-h--------hhhhhcccccCCceeeEEeecc
Confidence 011223446677777666 68999999999999972 2 2233456778889999998887
Q ss_pred c
Q 000268 455 A 455 (1757)
Q Consensus 455 g 455 (1757)
|
T Consensus 483 G 483 (644)
T KOG2395|consen 483 G 483 (644)
T ss_pred C
Confidence 6
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=90.97 E-value=32 Score=46.68 Aligned_cols=79 Identities=19% Similarity=0.355 Sum_probs=55.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCceEEEEECC----------CCCc---eEEe--------cCCCCceEEEEecCCCCceEE
Q 000268 286 GDITDLAVSSNNALVASASNDCIIRVWRLP----------DGLP---ISVL--------RGHTAAVTAIAFSPRPGSVYQ 344 (1757)
Q Consensus 286 ~~VtsLafSPDg~lLASgS~DGtIrVWDl~----------tg~~---l~~l--------~gH~~~VtsLafSPdg~~~~~ 344 (1757)
-.|..|.++|+|++||..|..|.+ |-.+. .|.. .+++ ..+...|..+.|+|.+.....
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 468899999999999998887644 43332 1221 1111 134568999999998633348
Q ss_pred EEEEeCCCcEEEEecCCCCcc
Q 000268 345 LLSSSDDGTCRIWDARYSQFS 365 (1757)
Q Consensus 345 LaSgs~DGtIrIWDl~tg~~~ 365 (1757)
|+.-..|+++++||+......
T Consensus 164 l~vLtsdn~lR~y~~~~~~~p 184 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQHP 184 (717)
T ss_pred EEEEecCCEEEEEecCCCCCC
Confidence 888999999999999765433
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins | Back alignment and domain information |
|---|
Probab=90.96 E-value=0.27 Score=51.47 Aligned_cols=61 Identities=18% Similarity=0.370 Sum_probs=45.0
Q ss_pred CCCHHHHHHHhhhcccCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHhCC
Q 000268 1687 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1747 (1757)
Q Consensus 1687 Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~~~s~i~~~a~~l~~~~~~~l~~~ 1747 (1757)
|.||.-++++|++++|+++.+|.+||-.|+.=+..=-+-.-++-+.-..+.-+|.+.|.+.
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~v 119 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESV 119 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHh
Confidence 8999999999999999999999999999987554333322233333445556777777654
|
ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=90.37 E-value=36 Score=46.16 Aligned_cols=89 Identities=8% Similarity=0.113 Sum_probs=54.1
Q ss_pred CCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcc-e--e--------eecCCCCCceEEEEccCccccc
Q 000268 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHE-I--D--------VLSGHENDVNYVQFSGCAVASR 459 (1757)
Q Consensus 391 ~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~-i--~--------~l~gH~~~V~sLafSpdg~~s~ 459 (1757)
....|..+.++++|.++|..|..|.+.+.=.+..........+.. + + ....+...|..+.|.|.+.
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~--- 159 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSE--- 159 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCC---
Confidence 445789999999999999988876443332221100000000000 0 0 0123345677778887641
Q ss_pred cccccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeCCCCC
Q 000268 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR 502 (1757)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k 502 (1757)
.+..|++-..|+++++||+....
T Consensus 160 --------------------~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 160 --------------------SDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred --------------------CCCeEEEEecCCEEEEEecCCCC
Confidence 24689999999999999997544
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.14 E-value=3.8 Score=55.50 Aligned_cols=145 Identities=8% Similarity=-0.034 Sum_probs=86.0
Q ss_pred cceEEEEECCCCCEEEEeeC--CceEEEecCCCCCCCCCCC--CCcceeeecCCCCCceEEEEccCccccccccccCCCC
Q 000268 393 HQIFCCAFNANGTVFVTGSS--DTLARVWNACKPNTDDSDQ--PNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 468 (1757)
Q Consensus 393 ~~V~slafSpdG~~LasGs~--DG~IrVWDl~t~~~~~s~~--~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~ 468 (1757)
..+..+...+|+...++... +-.|.+||+++-....... +.............+.++.|.|.-
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~v------------- 167 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLV------------- 167 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCc-------------
Confidence 34556666778776555444 3488999997533211111 111111112223344566666643
Q ss_pred CCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEE
Q 000268 469 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 548 (1757)
Q Consensus 469 ~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVaf 548 (1757)
....+.+..|+.|++..+.... ...........+++++|
T Consensus 168 ------------p~n~av~l~dlsl~V~~~~~~~-----------------------------~~v~s~p~t~~~Tav~W 206 (1405)
T KOG3630|consen 168 ------------PLNSAVDLSDLSLRVKSTKQLA-----------------------------QNVTSFPVTNSQTAVLW 206 (1405)
T ss_pred ------------cchhhhhccccchhhhhhhhhh-----------------------------hhhcccCcccceeeEEe
Confidence 2466778888888887555211 00011223456899999
Q ss_pred cCCCCEEEEEecCCeEEEEECCCCceEEEEeCC----CCCeEEEEEec
Q 000268 549 SLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH----TESTYVLDVHP 592 (1757)
Q Consensus 549 SPDG~~LaSGs~DG~I~IWDl~tgkll~~L~gH----~~~VtsLafSP 592 (1757)
+|.|+.+++|-..|++.-|.. +++....+.+. ...|.+|+|-.
T Consensus 207 SprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 207 SPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLS 253 (1405)
T ss_pred ccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEec
Confidence 999999999999999998875 34444443321 35789999976
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=89.82 E-value=0.73 Score=39.92 Aligned_cols=34 Identities=15% Similarity=0.236 Sum_probs=30.1
Q ss_pred CCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeE
Q 000268 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYC 277 (1757)
Q Consensus 243 ~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~ 277 (1757)
...|.+++|+|...+||.|+.+|.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 356999999999999999999999999998 5554
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=89.62 E-value=20 Score=45.18 Aligned_cols=151 Identities=13% Similarity=0.143 Sum_probs=88.5
Q ss_pred CCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCC-----
Q 000268 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL----- 318 (1757)
Q Consensus 244 ~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~----- 318 (1757)
+....+..+++|.+++.|..-..++-||--.-.....-......+..+.|.+++.+++++ ..|.| +|....|.
T Consensus 239 Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~ 316 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDF 316 (398)
T ss_pred cceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCccccc
Confidence 345667788999988888665444455532111122222345678999999999888766 45554 44444553
Q ss_pred ceEEecC--CCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceE
Q 000268 319 PISVLRG--HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF 396 (1757)
Q Consensus 319 ~l~~l~g--H~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~ 396 (1757)
....+.. ....++++.|.+++ .++.++..|.|.... ..|+.-... .....-...++
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~----~~~a~G~~G~v~~s~-D~G~tW~~~-----------------~~~~~~~~~ly 374 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKK----EAWAAGGSGILLRST-DGGKSWKRD-----------------KGADNIAANLY 374 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCC----cEEEEECCCcEEEeC-CCCcceeEc-----------------cccCCCCccee
Confidence 2222221 12358999999887 477777888766653 333211111 00112234577
Q ss_pred EEEECCCCCEEEEeeCCceEEEe
Q 000268 397 CCAFNANGTVFVTGSSDTLARVW 419 (1757)
Q Consensus 397 slafSpdG~~LasGs~DG~IrVW 419 (1757)
.+.|.++++.+++| .+|.|.-|
T Consensus 375 ~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 375 SVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred EEEEcCCCceEEEe-CCcEEEEe
Confidence 89998877766665 57776554
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.46 E-value=1e+02 Score=42.45 Aligned_cols=384 Identities=14% Similarity=0.126 Sum_probs=0.0
Q ss_pred CCCEEEEEECCCC------CEEEEEcCCceEEEEecCCCeEEEEEe--cCCCCeEEEEEcCCCC---------EEEEEeC
Q 000268 243 RNAVYCAIFDRSG------RYVITGSDDRLVKIWSMETAYCLASCR--GHEGDITDLAVSSNNA---------LVASASN 305 (1757)
Q Consensus 243 ~~~V~~VaFSPDG------~~LATGS~DGtIkIWDl~tg~~l~tL~--gH~~~VtsLafSPDg~---------lLASgS~ 305 (1757)
...|.|+++.+++ ++|+.|+.|+++++..+....++..+. +-...+.++.+-+... +|.+|-.
T Consensus 582 ~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~ 661 (1205)
T KOG1898|consen 582 STDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLR 661 (1205)
T ss_pred ceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEeccc
Q ss_pred CceEEEE--ECCCC--CceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCcccc---
Q 000268 306 DCIIRVW--RLPDG--LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVA--- 378 (1757)
Q Consensus 306 DGtIrVW--Dl~tg--~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~--- 378 (1757)
+|.+.=. |.-+| ..+++-.-...+|.-..++-.+. --+-+-.+..-..++.........+.......+..
T Consensus 662 NGvllR~~id~v~G~l~d~rtR~lG~~pvkLf~~~~~~~---s~vL~lSsr~wl~y~~~~~~h~t~Isy~~l~~as~~~S 738 (1205)
T KOG1898|consen 662 NGVLLRFVIDTVTGQLLDIRTRFLGLRPVKLFPISMRGQ---SDVLALSSRPWLLYTYQQEFHLTPISYSTLEHASPFCS 738 (1205)
T ss_pred ccEEEEEEecccccceeeeheeeeccccceEEEEeecCc---ceeEEecCChhhhhhhcceeeeecccccchhccccccc
Q ss_pred ---------------------CCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCccee
Q 000268 379 ---------------------GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEID 437 (1757)
Q Consensus 379 ---------------------g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~ 437 (1757)
..........-+....+..++.+|....++.+..|......+-
T Consensus 739 ~qcpeGiv~i~~n~l~i~~~~~~g~~~n~~~~~l~~tprkvv~h~es~lLii~~td~~~~~~~~---------------- 802 (1205)
T KOG1898|consen 739 EQCPEGIVAISKNTLRIIALDKLGKVLNVDGFPLAYTPRKVVIHPESGLLIIGRTDHNATLTKD---------------- 802 (1205)
T ss_pred cCCCcchhhhhhhhhheeeehhhcccccccccccccCcceEEEecCCCeEEEEEecccchhhHH----------------
Q ss_pred eecCCCCCceEEEEccCccccccccccCCCCCCCCcccccccCCCcEEEEcCCCe-----EEEEeCCCCCCCcccccccc
Q 000268 438 VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGS-----AIIWIPRSRRSHPKAARWTQ 512 (1757)
Q Consensus 438 ~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGt-----I~IWDl~t~k~~~~~~~w~~ 512 (1757)
+...++...+............+.........-.....+.+.-..|. |++.|..
T Consensus 803 --------a~~~~~~~g~v~~s~~~~e~e~g~em~~~~~~~~~~~~v~~~p~a~~~w~s~I~~~d~~------------- 861 (1205)
T KOG1898|consen 803 --------ARKNQMEAGGVLESGEEKEDEMGGEMEIIGREEVLPENVYGSPRAGNGWVSSIRVFDPK------------- 861 (1205)
T ss_pred --------HhhhhhhcccccccccccchhhccchhhhccccccccccccCcccccCccceEEEEcCC-------------
Q ss_pred cccccCCCCCCCCCCCCCCCceeecCCCCC-----eeEEEEcCCCCE-EEEEe------------cCCeEEEEEC-CCCc
Q 000268 513 AYHLKVPPPPMPPQPPRGGPRQRILPTPRG-----VNMIVWSLDNRF-VLAAI------------MDCRICVWNA-ADGS 573 (1757)
Q Consensus 513 ~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~-----VtsVafSPDG~~-LaSGs------------~DG~I~IWDl-~tgk 573 (1757)
.+.+.....+... |..+.|+..... ++..+ .+|.++.|++ ..|+
T Consensus 862 -----------------s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~ 924 (1205)
T KOG1898|consen 862 -----------------SGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGD 924 (1205)
T ss_pred -----------------CCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCc
Q ss_pred eEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000268 574 LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 653 (1757)
Q Consensus 574 ll~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWd 653 (1757)
.+.-+....-.-.-.+.+|+.+++| +|....+++||+...++++.......+..-....-.+..|++|+..-.+..+.
T Consensus 925 ~lellh~T~~~~~v~Ai~~f~~~~L--agvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~ 1002 (1205)
T KOG1898|consen 925 KLELLHKTEIPGPVGAICPFQGRVL--AGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVR 1002 (1205)
T ss_pred eeeeeeccCCCccceEEeccCCEEE--EecccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEE
Q ss_pred CCC---------CccccccccceeecCCCccEEEccCCcee
Q 000268 654 TGQ---------GESQKDAKYDQFFLGDYRPLVQDTYGNVL 685 (1757)
Q Consensus 654 l~t---------Ge~~~~~~~~~~fs~D~r~Li~d~~g~vl 685 (1757)
-.. +.+.+.......+......+..|..|+++
T Consensus 1003 y~~~~n~l~~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi~ 1043 (1205)
T KOG1898|consen 1003 YRREDNQLIVFADDPVPRHVTALELLDYDTVAGADRFGNIA 1043 (1205)
T ss_pred EecCCCeEEEEeCCCccceeeEEEEecCCceeeccccCcEE
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=89.08 E-value=60 Score=39.17 Aligned_cols=76 Identities=16% Similarity=0.184 Sum_probs=53.8
Q ss_pred EcCCCCEEEEEecCCeEEEEECCCCceEEEEe--CCCCCeEEEEEec-----CCCcEEEEEeCCCcEEEEeCCCCceEEE
Q 000268 548 WSLDNRFVLAAIMDCRICVWNAADGSLVHSLT--GHTESTYVLDVHP-----FNPRIAMSAGYDGKTIVWDIWEGIPIRI 620 (1757)
Q Consensus 548 fSPDG~~LaSGs~DG~I~IWDl~tgkll~~L~--gH~~~VtsLafSP-----dd~~lLaSgs~DG~IrIWDl~tg~~l~~ 620 (1757)
-.++...=+.|..-|.|-+||+ .|.+++.+. +.-..-+.|+..| ..+.+|+---.||+|.++|..+|+.+..
T Consensus 208 qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~ 286 (336)
T TIGR03118 208 QDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQ 286 (336)
T ss_pred cCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeee
Confidence 3444444455666789999997 688888884 2333456677655 3456776656799999999999998887
Q ss_pred Eeec
Q 000268 621 YEIS 624 (1757)
Q Consensus 621 l~~~ 624 (1757)
+...
T Consensus 287 L~~~ 290 (336)
T TIGR03118 287 LLDP 290 (336)
T ss_pred ecCC
Confidence 7643
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=88.88 E-value=1.1 Score=38.81 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=30.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCceEEEEECCCCCc
Q 000268 285 EGDITDLAVSSNNALVASASNDCIIRVWRLPDGLP 319 (1757)
Q Consensus 285 ~~~VtsLafSPDg~lLASgS~DGtIrVWDl~tg~~ 319 (1757)
...|.+++|+|...+||.|+.+|.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999999999999999999999998 5554
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=88.37 E-value=9.6 Score=47.72 Aligned_cols=172 Identities=11% Similarity=0.094 Sum_probs=85.4
Q ss_pred CCCCCEEEEEc------CCceEEEEecCCCeEEEEEecC---CCCeEEEEEcCCCCEEEEEe------------------
Q 000268 252 DRSGRYVITGS------DDRLVKIWSMETAYCLASCRGH---EGDITDLAVSSNNALVASAS------------------ 304 (1757)
Q Consensus 252 SPDG~~LATGS------~DGtIkIWDl~tg~~l~tL~gH---~~~VtsLafSPDg~lLASgS------------------ 304 (1757)
-|+|++++++- .-|-+.+.|-++.......... ..--.++-|.|..+.++|..
T Consensus 138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~ 217 (461)
T PF05694_consen 138 LPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEA 217 (461)
T ss_dssp -SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHH
T ss_pred cCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhc
Confidence 36898888752 2357889998888877776532 23346677888878888763
Q ss_pred --CCceEEEEECCCCCceEEecCCC--CceEEEEecCCCCceEEEEEEeCCCcEEEEec-CCCCccceeecCCCCccccC
Q 000268 305 --NDCIIRVWRLPDGLPISVLRGHT--AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA-RYSQFSPRIYIPRPSDAVAG 379 (1757)
Q Consensus 305 --~DGtIrVWDl~tg~~l~~l~gH~--~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl-~tg~~~~~i~l~~~~~~~~g 379 (1757)
...++.+||+.+.+.++++.--. ..+..|.|..+....+-++.+...++|..|-- ..+.......+..+.....+
T Consensus 218 ~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 218 GKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG 297 (461)
T ss_dssp H-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred ccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence 24689999999999998886332 35667888877654445555555666655543 45544333222222111111
Q ss_pred CCCCC-CCCCCCCCcceEEEEECCCCCEEEEee-CCceEEEecCCC
Q 000268 380 RNMAP-SSSAGPQSHQIFCCAFNANGTVFVTGS-SDTLARVWNACK 423 (1757)
Q Consensus 380 ~~~~~-~~~~~~~~~~V~slafSpdG~~LasGs-~DG~IrVWDl~t 423 (1757)
..... .........-|+.|..|.|.++|.+.+ .+|.|+.||+..
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 10000 001111234588999999999887766 489999999965
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=87.83 E-value=71 Score=38.55 Aligned_cols=76 Identities=13% Similarity=0.170 Sum_probs=51.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCceEEEEECC------CCCc-eEEecC-----CCCceEEEEecCCCC---------ceEEE
Q 000268 287 DITDLAVSSNNALVASASNDCIIRVWRLP------DGLP-ISVLRG-----HTAAVTAIAFSPRPG---------SVYQL 345 (1757)
Q Consensus 287 ~VtsLafSPDg~lLASgS~DGtIrVWDl~------tg~~-l~~l~g-----H~~~VtsLafSPdg~---------~~~~L 345 (1757)
.-+.|+|+|.+.+-++....+...+||.. .... +-++.. .....+.+.|..... ....+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 45789999999887887778899999986 2222 223321 234677787775322 11257
Q ss_pred EEEeCCCcEEEEecCCC
Q 000268 346 LSSSDDGTCRIWDARYS 362 (1757)
Q Consensus 346 aSgs~DGtIrIWDl~tg 362 (1757)
+.++.||+|.-|...-+
T Consensus 104 if~tEdGTisaW~p~v~ 120 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALG 120 (336)
T ss_pred EEEeCCceEEeecCcCC
Confidence 88999999999986433
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=87.65 E-value=93 Score=39.64 Aligned_cols=145 Identities=17% Similarity=0.206 Sum_probs=87.9
Q ss_pred CCCEEEEEcCCceEEEEecCCCe-----EEEEEecCCCCeEEEEEcC-----CCCEEEEEeCCceEEEEECC--CCC---
Q 000268 254 SGRYVITGSDDRLVKIWSMETAY-----CLASCRGHEGDITDLAVSS-----NNALVASASNDCIIRVWRLP--DGL--- 318 (1757)
Q Consensus 254 DG~~LATGS~DGtIkIWDl~tg~-----~l~tL~gH~~~VtsLafSP-----Dg~lLASgS~DGtIrVWDl~--tg~--- 318 (1757)
....|++||..|.++||+...+. ++.+.. -..+|..|+.-. +...||+ -.-..+.||.+. .|.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence 34689999999999999985432 222222 356788887542 2234554 345678888772 111
Q ss_pred ----ceEEecCCC--CceEEEEecCCCCc--eEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCC
Q 000268 319 ----PISVLRGHT--AAVTAIAFSPRPGS--VYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGP 390 (1757)
Q Consensus 319 ----~l~~l~gH~--~~VtsLafSPdg~~--~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~ 390 (1757)
.+..+..|. .....+++-|-|.. ..+|.+-+.||.+.+++-+.-.+...+ +.
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~l--p~------------------ 173 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFL--PD------------------ 173 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEc--CC------------------
Confidence 122222232 33444555444332 248888999999999987654322221 11
Q ss_pred CCcceEEEEECCCCCEEEEeeCCceEEEecC
Q 000268 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWNA 421 (1757)
Q Consensus 391 ~~~~V~slafSpdG~~LasGs~DG~IrVWDl 421 (1757)
---.-.++|.+.-..|++++.+..+..|..
T Consensus 174 -~llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 174 -FLLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred -CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 111235778888888999988888888876
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=87.40 E-value=12 Score=48.08 Aligned_cols=119 Identities=14% Similarity=0.154 Sum_probs=72.0
Q ss_pred cCCCCCeeEEEEcCCC----CEEEEEecCCeEEEEECC-----CCceEEEEeCCCC---C--eEEEEEecCCCcEEEEEe
Q 000268 537 LPTPRGVNMIVWSLDN----RFVLAAIMDCRICVWNAA-----DGSLVHSLTGHTE---S--TYVLDVHPFNPRIAMSAG 602 (1757)
Q Consensus 537 ~~h~~~VtsVafSPDG----~~LaSGs~DG~I~IWDl~-----tgkll~~L~gH~~---~--VtsLafSPdd~~lLaSgs 602 (1757)
.+.-..|..++|+|-+ ..|++.-....|.||-+. ..+.+..-..+-. + -....||| ...+|+.-.
T Consensus 53 iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT 131 (671)
T PF15390_consen 53 IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLT 131 (671)
T ss_pred eeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEe
Confidence 3344568889999853 244455556789999874 2333332222211 1 13467999 445554443
Q ss_pred CCCcEEEEeCCCC-ceEEEEeecCcceEEEEEcCCCCEEEEE-eCCCeEEEEECCC
Q 000268 603 YDGKTIVWDIWEG-IPIRIYEISRFRLVDGKFSPDGASIILS-DDVGQLYILNTGQ 656 (1757)
Q Consensus 603 ~DG~IrIWDl~tg-~~l~~l~~~~~~VtslafSPDGk~LAsg-s~DG~I~IWdl~t 656 (1757)
....-.+.++... ..++.=....+-|.+.+|.+||+.|+++ +..-.-+|||-..
T Consensus 132 ~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 132 ARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred cCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 3333345555433 3333322467789999999999999876 5556889999643
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.39 E-value=73 Score=42.39 Aligned_cols=51 Identities=16% Similarity=0.314 Sum_probs=40.8
Q ss_pred CceEEEEECCCCCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCC
Q 000268 306 DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY 361 (1757)
Q Consensus 306 DGtIrVWDl~tg~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~t 361 (1757)
--.|+|+++ +|+.+..+.-..+.+..+.|+.+. .|++...+|++.+|++-.
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e----eLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE----ELICVQKDGTVHVYGLLG 113 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeecccCCc----eEEEEeccceEEEeecch
Confidence 446889986 677777665555688899999886 699999999999999853
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=87.22 E-value=11 Score=49.54 Aligned_cols=105 Identities=8% Similarity=-0.061 Sum_probs=53.3
Q ss_pred CCCCEEEEEcCCc------eEEEEecCCCeEEEEE--ecCCCCeEEEEEcCCCCEEEEEeCC-----ceEEEEECCCCCc
Q 000268 253 RSGRYVITGSDDR------LVKIWSMETAYCLASC--RGHEGDITDLAVSSNNALVASASND-----CIIRVWRLPDGLP 319 (1757)
Q Consensus 253 PDG~~LATGS~DG------tIkIWDl~tg~~l~tL--~gH~~~VtsLafSPDg~lLASgS~D-----GtIrVWDl~tg~~ 319 (1757)
.++..++.||.++ .+..||..+.+....- .........++ -++.+.+.|+.+ ..+.+||..+++-
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 3556777776542 5778888877653321 11111222222 367777788765 3577888776532
Q ss_pred eE--EecCCCCceEEEEecCCCCceEEEEEEeCC------CcEEEEecCCCCc
Q 000268 320 IS--VLRGHTAAVTAIAFSPRPGSVYQLLSSSDD------GTCRIWDARYSQF 364 (1757)
Q Consensus 320 l~--~l~gH~~~VtsLafSPdg~~~~~LaSgs~D------GtIrIWDl~tg~~ 364 (1757)
.. .+.. ...-.+++.. ++. .++.||.+ ..+..||+.++..
T Consensus 371 ~~~~~lp~-~r~~~~~~~~-~~~---iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 371 REEPPLIF-PRYNPCVVNV-NNL---IYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred eeCCCcCc-CCccceEEEE-CCE---EEEECCcCCCCcccceEEEEeCCCCee
Confidence 21 1111 1111122222 232 55566532 3577888877654
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=87.09 E-value=11 Score=49.86 Aligned_cols=118 Identities=11% Similarity=0.112 Sum_probs=79.0
Q ss_pred EEEccCCCCEEEEEECCCCCEEEEEcCCceEEEEecCCCeEEEEEe-cCCCCeEEEEEc--CCCCEEEEEeCCceEEEEE
Q 000268 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDLAVS--SNNALVASASNDCIIRVWR 313 (1757)
Q Consensus 237 ~tL~GH~~~V~~VaFSPDG~~LATGS~DGtIkIWDl~tg~~l~tL~-gH~~~VtsLafS--PDg~lLASgS~DGtIrVWD 313 (1757)
.++..-......+.-|.-++..++-+....+.|||...+.+...-. ...+.|.++.|. |+|+.+++.|..+.|.++.
T Consensus 23 ~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 23 STFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred EEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence 3343333445555555666665665666799999999887554433 457889999986 5888888888899999985
Q ss_pred CC---------CCCceEEe--cCCC-CceEEEEecCCCCceEEEEEEeCCCcEEEEec
Q 000268 314 LP---------DGLPISVL--RGHT-AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359 (1757)
Q Consensus 314 l~---------tg~~l~~l--~gH~-~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl 359 (1757)
-. +..+++.+ ..|+ .+|.+..|.++| .|++|+. ..+.|+|-
T Consensus 103 Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G----~LvV~sG-Nqlfv~dk 155 (631)
T PF12234_consen 103 QLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG----TLVVGSG-NQLFVFDK 155 (631)
T ss_pred ccchhhhcCCcccceeEEEEeecCCCCCccceeEecCC----eEEEEeC-CEEEEECC
Confidence 31 11233332 3455 689999999998 4555553 45788764
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.94 E-value=2.6 Score=56.99 Aligned_cols=114 Identities=11% Similarity=-0.004 Sum_probs=75.9
Q ss_pred CCeeEEEEcCCCCEEEEEe--cCCeEEEEECCCCceE-----EEEeC------CCCCeEEEEEecCCCcEEEEEeCCCcE
Q 000268 541 RGVNMIVWSLDNRFVLAAI--MDCRICVWNAADGSLV-----HSLTG------HTESTYVLDVHPFNPRIAMSAGYDGKT 607 (1757)
Q Consensus 541 ~~VtsVafSPDG~~LaSGs--~DG~I~IWDl~tgkll-----~~L~g------H~~~VtsLafSPdd~~lLaSgs~DG~I 607 (1757)
-.|..++..+|+...++.. .+-.|++||+.+...- .-|.. ...-+.++.|.|.-....+....|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 3456666677877665543 4447999998763211 11222 223456788988655566677789999
Q ss_pred EEEeCCCCce-EEEEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 000268 608 IVWDIWEGIP-IRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 655 (1757)
Q Consensus 608 rIWDl~tg~~-l~~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~ 655 (1757)
++..+..-.. +..+. .....++++|+|-|+.|++|...|++.-|...
T Consensus 181 ~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred hhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecc
Confidence 9887743322 22222 34467899999999999999999999988753
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.79 E-value=26 Score=40.42 Aligned_cols=174 Identities=12% Similarity=0.148 Sum_probs=99.5
Q ss_pred EEEEEcCCceEEEEe--cCCCeEEEEEec-----CCCCeEEEEEcCCCCEEEEEeCC---------ceEEEEECCCCCce
Q 000268 257 YVITGSDDRLVKIWS--METAYCLASCRG-----HEGDITDLAVSSNNALVASASND---------CIIRVWRLPDGLPI 320 (1757)
Q Consensus 257 ~LATGS~DGtIkIWD--l~tg~~l~tL~g-----H~~~VtsLafSPDg~lLASgS~D---------GtIrVWDl~tg~~l 320 (1757)
+.+.++.--.|.-|| .+.....+++.. ......+-..+|+|++.+-.-.| |.++.|-. +..+
T Consensus 73 ~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~--~h~v 150 (310)
T KOG4499|consen 73 FAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA--GHQV 150 (310)
T ss_pred EEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEecc--CCCc
Confidence 344444444455577 333444444321 13445566678999985433222 44555543 2233
Q ss_pred EEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEe--cCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEE
Q 000268 321 SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD--ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCC 398 (1757)
Q Consensus 321 ~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWD--l~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sl 398 (1757)
..+...-+.-+.++|..+.+ .+.++-+.+-+|.-|| ..+|.......+- .-+...+.... ..-.+
T Consensus 151 ~~i~~~v~IsNgl~Wd~d~K--~fY~iDsln~~V~a~dyd~~tG~~snr~~i~------dlrk~~~~e~~-----~PDGm 217 (310)
T KOG4499|consen 151 ELIWNCVGISNGLAWDSDAK--KFYYIDSLNYEVDAYDYDCPTGDLSNRKVIF------DLRKSQPFESL-----EPDGM 217 (310)
T ss_pred eeeehhccCCccccccccCc--EEEEEccCceEEeeeecCCCcccccCcceeE------EeccCCCcCCC-----CCCcc
Confidence 33333344456788987765 2445666777887887 6677654332110 00111111111 12234
Q ss_pred EECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccC
Q 000268 399 AFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 454 (1757)
Q Consensus 399 afSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpd 454 (1757)
+...+|.+.++.-..++|...|..+ ++.+..+.-....|++++|-..
T Consensus 218 ~ID~eG~L~Va~~ng~~V~~~dp~t---------GK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 218 TIDTEGNLYVATFNGGTVQKVDPTT---------GKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred eEccCCcEEEEEecCcEEEEECCCC---------CcEEEEEEcCCCceEEEEecCC
Confidence 5566899888888899999999976 4566777777889999999754
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=86.56 E-value=51 Score=40.67 Aligned_cols=110 Identities=17% Similarity=0.235 Sum_probs=60.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCceEEE-EECCCCCce-EEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCC
Q 000268 285 EGDITDLAVSSNNALVASASNDCIIRV-WRLPDGLPI-SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 362 (1757)
Q Consensus 285 ~~~VtsLafSPDg~lLASgS~DGtIrV-WDl~tg~~l-~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg 362 (1757)
.+.+.++.+.+++.+++++. .|.+.. ++ ..++.- .....-...++++.+.+++. ++..+..|.+.+=....+
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~----~~~vg~~G~~~~~s~d~G 245 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGN----LWMLARGGQIRFNDPDDL 245 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCC----EEEEecCCEEEEccCCCC
Confidence 56789999999987776654 554432 22 122222 22233456789999999875 444456676653223333
Q ss_pred CccceeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEE
Q 000268 363 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLAR 417 (1757)
Q Consensus 363 ~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~Ir 417 (1757)
..-..... ........+..++|.+++..+++| .+|.|.
T Consensus 246 ~sW~~~~~----------------~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~ 283 (334)
T PRK13684 246 ESWSKPII----------------PEITNGYGYLDLAYRTPGEIWAGG-GNGTLL 283 (334)
T ss_pred CccccccC----------------CccccccceeeEEEcCCCCEEEEc-CCCeEE
Confidence 21111100 000122347889999988766655 466554
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=86.01 E-value=17 Score=47.54 Aligned_cols=65 Identities=6% Similarity=-0.062 Sum_probs=34.7
Q ss_pred CCCCEEEEEecC------CeEEEEECCCCceEE--EEeCCCCCeEEEEEecCCCcEEEEEeCCC--------cEEEEeCC
Q 000268 550 LDNRFVLAAIMD------CRICVWNAADGSLVH--SLTGHTESTYVLDVHPFNPRIAMSAGYDG--------KTIVWDIW 613 (1757)
Q Consensus 550 PDG~~LaSGs~D------G~I~IWDl~tgkll~--~L~gH~~~VtsLafSPdd~~lLaSgs~DG--------~IrIWDl~ 613 (1757)
-+++.++.|+.+ ..+.+||..+.+-.. .+...... .+++. - ++.+++.||.++ .+.+||..
T Consensus 388 ~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~-~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 464 (534)
T PHA03098 388 VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAIY-H-DGKIYVIGGISYIDNIKVYNIVESYNPV 464 (534)
T ss_pred ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEEE-E-CCEEEEECCccCCCCCcccceEEEecCC
Confidence 367777777632 358889987654322 11111111 12222 2 567777776532 37888887
Q ss_pred CCce
Q 000268 614 EGIP 617 (1757)
Q Consensus 614 tg~~ 617 (1757)
+++-
T Consensus 465 ~~~W 468 (534)
T PHA03098 465 TNKW 468 (534)
T ss_pred CCce
Confidence 6643
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.60 E-value=0.28 Score=63.89 Aligned_cols=152 Identities=14% Similarity=0.154 Sum_probs=84.1
Q ss_pred CceEEEEECCCCC-ceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecC--CCCccceeecCCCCccccCCCC
Q 000268 306 DCIIRVWRLPDGL-PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR--YSQFSPRIYIPRPSDAVAGRNM 382 (1757)
Q Consensus 306 DGtIrVWDl~tg~-~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~--tg~~~~~i~l~~~~~~~~g~~~ 382 (1757)
.+.|++-+..+.. .-..+++..+.|-.+.|-...- . .++ -.-|.+.||++. .|+....+.+...
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~-p-k~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~--------- 176 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKC-P-KGR--RLVGELFVYDVDVLQGEIQPQLEVTPI--------- 176 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCC-h-HHH--HHhhhhheeehHhhccccccceEEeec---------
Confidence 4567777765432 1233466778888888854321 1 222 334778899876 4444444432110
Q ss_pred CCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccc
Q 000268 383 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSL 462 (1757)
Q Consensus 383 ~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~ 462 (1757)
.........|..+-|-++..++..+-.++.|++..+.+. ....+.+|...+..++|...|+.
T Consensus 177 ---~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra----------~~~l~rsHs~~~~d~a~~~~g~~----- 238 (1283)
T KOG1916|consen 177 ---TPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRA----------LRSLFRSHSQRVTDMAFFAEGVL----- 238 (1283)
T ss_pred ---CcCCCCcceeeecccccccceeeeccCCCceeEeeechH----------HHHHHHhcCCCcccHHHHhhchh-----
Confidence 000111123444444456778888888999998877532 22456679988888887765521
Q ss_pred ccCCCCCCCCcccccccCCCcEEEEcCCCeEEEEeC
Q 000268 463 ADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIP 498 (1757)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl 498 (1757)
.+.....++..|+.++.||.++.|.+
T Consensus 239 ----------~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 239 ----------KLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred ----------hheeeCCCCcEEEEeecCCccceeee
Confidence 11111223456666666776666644
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=83.92 E-value=18 Score=45.07 Aligned_cols=95 Identities=15% Similarity=0.142 Sum_probs=54.7
Q ss_pred CCEEEEEECCCCCEEEEEc-----------CCc-eEEEEecCC--CeE--EEEEecCCCCeEEEEEcCCCCEEEEEeCCc
Q 000268 244 NAVYCAIFDRSGRYVITGS-----------DDR-LVKIWSMET--AYC--LASCRGHEGDITDLAVSSNNALVASASNDC 307 (1757)
Q Consensus 244 ~~V~~VaFSPDG~~LATGS-----------~DG-tIkIWDl~t--g~~--l~tL~gH~~~VtsLafSPDg~lLASgS~DG 307 (1757)
....+|+|+++|+++++-. ..+ .|.+++-.+ |+. ...+...-.....|+|.++| ++++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCCe
Confidence 3456889999999877743 223 777776543 332 23343334456889999988 5544 4443
Q ss_pred eEEEEECCC-C----CceEE---ecC----CCCceEEEEecCCCC
Q 000268 308 IIRVWRLPD-G----LPISV---LRG----HTAAVTAIAFSPRPG 340 (1757)
Q Consensus 308 tIrVWDl~t-g----~~l~~---l~g----H~~~VtsLafSPdg~ 340 (1757)
.+++.+... + +.... +.. +......++|.||+.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~ 136 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW 136 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC
Confidence 333445432 1 21111 222 234577899999986
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=83.90 E-value=35 Score=45.69 Aligned_cols=113 Identities=14% Similarity=0.174 Sum_probs=73.6
Q ss_pred CCCeeEEEEcC--CCCEEEEEecCCeEEEEECCC-------C-------------ceEEEEeCCCCCeEEEEEe--cCCC
Q 000268 540 PRGVNMIVWSL--DNRFVLAAIMDCRICVWNAAD-------G-------------SLVHSLTGHTESTYVLDVH--PFNP 595 (1757)
Q Consensus 540 ~~~VtsVafSP--DG~~LaSGs~DG~I~IWDl~t-------g-------------kll~~L~gH~~~VtsLafS--Pdd~ 595 (1757)
...|+.|...- +...|+++..||.|.+|.+.+ . ++...+. -...+++++++ . ..
T Consensus 100 PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~ 177 (717)
T PF08728_consen 100 PHTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KS 177 (717)
T ss_pred CceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cc
Confidence 34466655443 456889999999999997632 0 0112222 23468999998 5 66
Q ss_pred cEEEEEeCCCcEEEEeCCCC--ceEE-EEeecCcceEEEEEcCCC-----C-EEEEEeCCCeEEEEEC
Q 000268 596 RIAMSAGYDGKTIVWDIWEG--IPIR-IYEISRFRLVDGKFSPDG-----A-SIILSDDVGQLYILNT 654 (1757)
Q Consensus 596 ~lLaSgs~DG~IrIWDl~tg--~~l~-~l~~~~~~VtslafSPDG-----k-~LAsgs~DG~I~IWdl 654 (1757)
+++|.++....|.||-+... +... .-..+...|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 178 rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 178 RLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 88888888888888765432 1111 011244567888886643 2 7888999999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=83.23 E-value=42 Score=42.47 Aligned_cols=141 Identities=11% Similarity=0.069 Sum_probs=85.8
Q ss_pred CCCEEE-EEcCCceEEEEecCCCeEEEEEecCCCCeEEEEEcCCCC--------EEEEEeCCceEEEEECC-CCCceEEe
Q 000268 254 SGRYVI-TGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA--------LVASASNDCIIRVWRLP-DGLPISVL 323 (1757)
Q Consensus 254 DG~~LA-TGS~DGtIkIWDl~tg~~l~tL~gH~~~VtsLafSPDg~--------lLASgS~DGtIrVWDl~-tg~~l~~l 323 (1757)
|..+|. .|+....++--|++-|+.+.++..|..- -+.|.|+.+ .|+--+ +..|.-.|.+ .|..+...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeec-ccceEEecccccCCceeee
Confidence 444443 4555667777889999999998877654 567777532 344434 4444444543 33333332
Q ss_pred cC----CCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccceeecCCCCccccCCCCCCCCCCCCCCcceEEEE
Q 000268 324 RG----HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCA 399 (1757)
Q Consensus 324 ~g----H~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sla 399 (1757)
.. ......+..-...| ++++++..|-|++||--.-+. .....+.+..|..+.
T Consensus 555 esKdY~tKn~Fss~~tTesG----yIa~as~kGDirLyDRig~rA--------------------KtalP~lG~aIk~id 610 (776)
T COG5167 555 ESKDYKTKNKFSSGMTTESG----YIAAASRKGDIRLYDRIGKRA--------------------KTALPGLGDAIKHID 610 (776)
T ss_pred eehhccccccccccccccCc----eEEEecCCCceeeehhhcchh--------------------hhcCcccccceeeeE
Confidence 21 11222333333333 899999999999998532221 111234566788999
Q ss_pred ECCCCCEEEEeeCCceEEEecCC
Q 000268 400 FNANGTVFVTGSSDTLARVWNAC 422 (1757)
Q Consensus 400 fSpdG~~LasGs~DG~IrVWDl~ 422 (1757)
.+.+|.+|++.|. ..+.+-|+.
T Consensus 611 vta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 611 VTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred eecCCcEEEEeec-ceEEEEecc
Confidence 9999999887774 567777774
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=83.03 E-value=22 Score=46.02 Aligned_cols=104 Identities=11% Similarity=-0.014 Sum_probs=52.3
Q ss_pred CCCEEEEEcCCc-----eEEEEecCCCeEEEE--EecCCCCeEEEEEcCCCCEEEEEeCC--ceEEEEECCCCCc--eEE
Q 000268 254 SGRYVITGSDDR-----LVKIWSMETAYCLAS--CRGHEGDITDLAVSSNNALVASASND--CIIRVWRLPDGLP--ISV 322 (1757)
Q Consensus 254 DG~~LATGS~DG-----tIkIWDl~tg~~l~t--L~gH~~~VtsLafSPDg~lLASgS~D--GtIrVWDl~tg~~--l~~ 322 (1757)
++..+++||.++ ++..||..++..... +.........+ .-+|.+.+.|+.+ ..+..||..+++- +..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 455667777542 577788877654432 21111112222 2367777787754 3577888765432 122
Q ss_pred ecCCCCceEEEEecCCCCceEEEEEEeCCC---cEEEEecCCCCc
Q 000268 323 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDG---TCRIWDARYSQF 364 (1757)
Q Consensus 323 l~gH~~~VtsLafSPdg~~~~~LaSgs~DG---tIrIWDl~tg~~ 364 (1757)
+....... +++.. ++. ..+.||.++ .+..||..+...
T Consensus 349 l~~~r~~~-~~~~~-~g~---IYviGG~~~~~~~ve~ydp~~~~W 388 (480)
T PHA02790 349 LLKPRCNP-AVASI-NNV---IYVIGGHSETDTTTEYLLPNHDQW 388 (480)
T ss_pred CCCCCccc-EEEEE-CCE---EEEecCcCCCCccEEEEeCCCCEE
Confidence 22111111 22222 332 556666543 466788776653
|
|
| >PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions | Back alignment and domain information |
|---|
Probab=82.89 E-value=1.4 Score=33.53 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=23.0
Q ss_pred hHHHHHHHHHhccCCchhhHHHHHHH
Q 000268 50 REVYFLIMHFLSTGPCHRTYGQFWNE 75 (1757)
Q Consensus 50 ~elyflI~~fL~~gp~~~~a~~L~~e 75 (1757)
.+|++||++||...++..+|+.|.+|
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~E 26 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKE 26 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhc
Confidence 37999999999999999999999876
|
The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=81.99 E-value=26 Score=45.22 Aligned_cols=165 Identities=11% Similarity=0.135 Sum_probs=92.7
Q ss_pred CcceEEEEECCCCCEEEEee---CCceEEEecCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccccCCCC
Q 000268 392 SHQIFCCAFNANGTVFVTGS---SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 468 (1757)
Q Consensus 392 ~~~V~slafSpdG~~LasGs---~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg~~s~~~~~~~~~~ 468 (1757)
-+.+..++|. ||+.++... .+|.+++=|. ..-|.-..|..+.|.|.+...
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds----------------~viGqFEhV~GlsW~P~~~~~---------- 71 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS----------------KVIGQFEHVHGLSWAPPCTAD---------- 71 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCCc----------------cEeeccceeeeeeecCcccCC----------
Confidence 4567889998 666554332 1222222211 123444568899999875211
Q ss_pred CCCCcccccccCCCcEEEEcCCCeEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeecCCCCCeeEEEE
Q 000268 469 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 548 (1757)
Q Consensus 469 ~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVaf 548 (1757)
-..|++.-....|.||-+..... ....|.......+.. ...---..+.|
T Consensus 72 ------------~paLLAVQHkkhVtVWqL~~s~~--e~~K~l~sQtcEi~e-----------------~~pvLpQGCVW 120 (671)
T PF15390_consen 72 ------------TPALLAVQHKKHVTVWQLCPSTT--ERNKLLMSQTCEIRE-----------------PFPVLPQGCVW 120 (671)
T ss_pred ------------CCceEEEeccceEEEEEeccCcc--ccccceeeeeeeccC-----------------CcccCCCcccc
Confidence 12566666778899998763211 111221111110000 00001134678
Q ss_pred cCCCCEEEEEecCCeEEEEECCC-CceE-EEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 000268 549 SLDNRFVLAAIMDCRICVWNAAD-GSLV-HSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG 615 (1757)
Q Consensus 549 SPDG~~LaSGs~DG~I~IWDl~t-gkll-~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg 615 (1757)
+|....|++-.....-.++++.. ...+ .-+ ...+.|.|.+|.++|.+++++.|..=.-+|||-...
T Consensus 121 HPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 121 HPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred cCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 99888887766555545555543 2222 233 346779999999988888888777767789986543
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=81.77 E-value=28 Score=41.24 Aligned_cols=114 Identities=13% Similarity=0.095 Sum_probs=78.6
Q ss_pred eeEEEEcCCCCEEEEEecCC--eEEEEECCCCceEEEEeCCCC-CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEE
Q 000268 543 VNMIVWSLDNRFVLAAIMDC--RICVWNAADGSLVHSLTGHTE-STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIR 619 (1757)
Q Consensus 543 VtsVafSPDG~~LaSGs~DG--~I~IWDl~tgkll~~L~gH~~-~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tg~~l~ 619 (1757)
...+.|..+|.++-+.+.-| .|+.+|+.+|+.+....-... ---.++.. ++++..-.=.++...+||..+.+.+.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEEE
Confidence 45677878888888888766 699999999998765542221 11234443 44555556678999999999999999
Q ss_pred EEeecCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc
Q 000268 620 IYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 661 (1757)
Q Consensus 620 ~l~~~~~~VtslafSPDGk~LAsgs~DG~I~IWdl~tGe~~~ 661 (1757)
.+.- .+.-+.++ .||+.|+.++....|+++|..+-+..+
T Consensus 125 ~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~ 163 (264)
T PF05096_consen 125 TFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVR 163 (264)
T ss_dssp EEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEE
T ss_pred EEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEE
Confidence 8873 34445555 788899999999999999987755443
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.58 E-value=1.4e+02 Score=37.80 Aligned_cols=136 Identities=10% Similarity=0.092 Sum_probs=82.2
Q ss_pred EEEEcCCCCEEEEEeCCceEEEEECCC---CCceEEecCCCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCccc
Q 000268 290 DLAVSSNNALVASASNDCIIRVWRLPD---GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSP 366 (1757)
Q Consensus 290 sLafSPDg~lLASgS~DGtIrVWDl~t---g~~l~~l~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~~ 366 (1757)
.+-|...++.|++. ..|.+.=|-+.. .-++..-....++|.+|.|++|.+ .|++--.+.+|.+++....+...
T Consensus 27 gvFfDDaNkqlfav-rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk---ilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 27 GVFFDDANKQLFAV-RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK---ILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred ceeeccCcceEEEE-ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcc---eEEEEecCceEEEEecCCCchhh
Confidence 33344334444333 344455565432 233333344567999999999987 89999999999999874433222
Q ss_pred eeecCCCCccccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEeeCCceEEEecCCCCCCCCCCCCCcceeeecCCCCCc
Q 000268 367 RIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDV 446 (1757)
Q Consensus 367 ~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~slafSpdG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V 446 (1757)
.... .-......|...+|+.+ .-+|.-...| +-+|.... ....++....|...|
T Consensus 103 ~~~~----------------~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p--------ekrslRlVks~~~nv 156 (657)
T KOG2377|consen 103 EYTQ----------------ECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP--------EKRSLRLVKSHNLNV 156 (657)
T ss_pred HHHH----------------HhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch--------hhhhhhhhhhcccCc
Confidence 2111 01123445888999866 4555555444 66665532 123455667788888
Q ss_pred eEEEEccCc
Q 000268 447 NYVQFSGCA 455 (1757)
Q Consensus 447 ~sLafSpdg 455 (1757)
....|.++.
T Consensus 157 nWy~yc~et 165 (657)
T KOG2377|consen 157 NWYMYCPET 165 (657)
T ss_pred cEEEEcccc
Confidence 888888775
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=80.01 E-value=32 Score=43.30 Aligned_cols=142 Identities=11% Similarity=0.086 Sum_probs=64.5
Q ss_pred CceEEEEecCCCeEEEEEecCC--CCeEEEEEcCC--CCEEEE-EeCCceEEEEEC-CCCC----ceEEecC--------
Q 000268 264 DRLVKIWSMETAYCLASCRGHE--GDITDLAVSSN--NALVAS-ASNDCIIRVWRL-PDGL----PISVLRG-------- 325 (1757)
Q Consensus 264 DGtIkIWDl~tg~~l~tL~gH~--~~VtsLafSPD--g~lLAS-gS~DGtIrVWDl-~tg~----~l~~l~g-------- 325 (1757)
..++.+||+.+.+.++++.-.. ..+..|.|..+ ..+=++ +.-..+|..|-- ..+. .+..+..
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 3589999999999999987433 23556777654 333333 233445554432 3332 1222211
Q ss_pred ---------CCCceEEEEecCCCCceEEEEEEeCCCcEEEEecCCCCcc---ceeecCCCCccccCCCCCCCCCCCCCCc
Q 000268 326 ---------HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS---PRIYIPRPSDAVAGRNMAPSSSAGPQSH 393 (1757)
Q Consensus 326 ---------H~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~~---~~i~l~~~~~~~~g~~~~~~~~~~~~~~ 393 (1757)
-..-|+.|.+|.|.+ ++.+++-..|.|+.||+...... .++.+.... .+...+......-.+
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDr--fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~----~~~~~~~v~g~~l~G 374 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDR--FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSI----RKGDHPVVKGKRLRG 374 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS---EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTT----T-B--TTS------S
T ss_pred cccccccccCCCceEeEEEccCCC--EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEe----ccCCCccccccccCC
Confidence 135689999999987 45667778999999999875432 222221110 000011111122334
Q ss_pred ceEEEEECCCCCEEEEee
Q 000268 394 QIFCCAFNANGTVFVTGS 411 (1757)
Q Consensus 394 ~V~slafSpdG~~LasGs 411 (1757)
....+..|-||+.|.+..
T Consensus 375 gPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 375 GPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ----EEE-TTSSEEEEE-
T ss_pred CCCeEEEccCCeEEEEEe
Confidence 566788888998887654
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1757 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 2e-13 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-11 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 3e-05 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-11 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 3e-05 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 3e-11 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 7e-05 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 3e-11 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 7e-05 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 3e-11 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 7e-05 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 3e-11 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 7e-05 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 3e-11 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 7e-05 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 3e-11 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 7e-05 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 4e-11 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 7e-05 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 4e-11 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 7e-05 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 4e-11 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 7e-05 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 4e-11 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 7e-05 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 4e-11 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 8e-05 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 4e-11 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 8e-05 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 4e-11 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 8e-05 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 6e-11 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 1e-04 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 6e-11 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 1e-04 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 2e-10 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 6e-10 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 3e-09 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 7e-08 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 1e-06 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 8e-08 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 1e-06 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 2e-07 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 5e-05 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 2e-07 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 2e-07 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 3e-07 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 3e-07 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 4e-07 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 4e-07 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 4e-07 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 5e-07 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 2e-04 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 1e-06 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 1e-06 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 2e-06 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 7e-05 | ||
| 3jro_A | 753 | Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice | 2e-06 | ||
| 3jrp_A | 379 | Sec13 With Nup145c (Aa109-179) Insertion Blade Leng | 4e-06 | ||
| 2pm9_B | 297 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 6e-06 | ||
| 2pm6_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 7e-06 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 9e-06 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 9e-06 | ||
| 4gqb_B | 344 | Crystal Structure Of The Human Prmt5:mep50 Complex | 1e-05 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 1e-05 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 1e-05 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 2e-05 | ||
| 2pm7_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 2e-05 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 2e-05 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 3e-05 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 3e-05 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 3e-05 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 3e-05 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 1e-04 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 1e-04 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 2e-04 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 4e-04 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753 | Back alignment and structure |
|
| >pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379 | Back alignment and structure |
|
| >pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297 | Back alignment and structure |
|
| >pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1757 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 9e-32 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-22 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-17 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-14 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-11 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-26 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 5e-15 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-09 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 5e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 8e-05 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-24 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 6e-23 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-21 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-13 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-10 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-23 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-20 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-17 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-15 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-11 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-21 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 9e-17 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 4e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 4e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-20 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 8e-18 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-19 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 7e-13 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 8e-13 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 5e-12 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 8e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-19 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-09 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-08 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 5e-08 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-18 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-17 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-12 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 6e-07 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 7e-17 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-15 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-12 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-16 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-10 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 6e-09 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 8e-16 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 9e-13 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-09 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.002 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-14 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-11 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 6e-14 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 6e-09 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-12 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-09 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-05 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 4e-10 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 7e-10 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 1e-09 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 6e-09 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-08 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 5e-08 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 2e-08 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 4e-04 | |
| d1wuma1 | 118 | a.29.2.1 (A:715-832) P300/CAF histone acetyltransf | 3e-06 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 3e-06 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 2e-05 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 5e-05 | |
| d3d7ca1 | 102 | a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [T | 4e-05 | |
| d1eqfa1 | 139 | a.29.2.1 (A:1359-1497) TAFII250 double bromodomain | 4e-04 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 6e-04 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 125 bits (314), Expect = 9e-32
Identities = 69/372 (18%), Positives = 130/372 (34%), Gaps = 68/372 (18%)
Query: 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAL 299
GHR+ V IF +++ S+D +K+W ET + +GH + D++ + L
Sbjct: 14 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL 73
Query: 300 VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
+AS S D I++W I + GH V++++ P ++S+S D T ++W+
Sbjct: 74 LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG---DHIVSASRDKTIKMWEV 130
Query: 360 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVW 419
+ + N +GT+ + S+D RVW
Sbjct: 131 QTGYCVKTFT--------------------GHREWVRMVRPNQDGTLIASCSNDQTVRVW 170
Query: 420 NACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWF 479
L H + V + ++ + S S A S+ K S
Sbjct: 171 VV---------ATKECKAELREHRHVVECISWAPESSYSSISEATGSE------TKKSGK 215
Query: 480 CHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT 539
+++ SRD + +W + G ++
Sbjct: 216 PGPFLLSGSRDKTIKMWDVST-----------------------------GMCLMTLVGH 246
Query: 540 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAM 599
V +++ +F+L+ D + VW+ + + +L H LD H P +
Sbjct: 247 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV- 305
Query: 600 SAGYDGKTIVWD 611
+ D VW+
Sbjct: 306 TGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 98.3 bits (243), Expect = 1e-22
Identities = 49/342 (14%), Positives = 95/342 (27%), Gaps = 27/342 (7%)
Query: 310 RVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIY 369
+ W +P L GH + VT + F P ++S+S+D T ++WD F
Sbjct: 1 KEW-IPRPPEKYALSGHRSPVTRVIFHP---VFSVMVSASEDATIKVWDYETGDFERT-- 54
Query: 370 IPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDS 429
+ +D+V + S + + S
Sbjct: 55 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR------TMHGHDHNVSSVS 108
Query: 430 DQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR 489
PN + V + + + + F+ P + I +CS
Sbjct: 109 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL-----IASCSN 163
Query: 490 DGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWS 549
D + +W+ + L+ + + G
Sbjct: 164 DQTVRVWVVAT---------KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 214
Query: 550 LDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIV 609
F+L+ D I +W+ + G + +L GH + H I S D V
Sbjct: 215 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL-SCADDKTLRV 273
Query: 610 WDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYI 651
WD ++ + F ++ + +
Sbjct: 274 WDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 315
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 83.6 bits (205), Expect = 1e-17
Identities = 54/294 (18%), Positives = 102/294 (34%), Gaps = 72/294 (24%)
Query: 220 CYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLA 279
+ Q + I+ + GH + V +G ++++ S D+ +K+W ++T YC+
Sbjct: 78 SADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK 137
Query: 280 SCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRP 339
+ GH + + + + L+AS SND +RVW + + LR H V I+++P
Sbjct: 138 TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPES 197
Query: 340 GSVY-----------------QLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 382
LLS S D T ++WD
Sbjct: 198 SYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD--------------------VSTG 237
Query: 383 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH 442
+ + + F++ G ++ + D RVW+ + + L+ H
Sbjct: 238 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY---------KNKRCMKTLNAH 288
Query: 443 ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW 496
E+ V + F + +VT S D + +W
Sbjct: 289 EHFVTSLDFH----------KTAPY----------------VVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 75.2 bits (183), Expect = 1e-14
Identities = 56/338 (16%), Positives = 115/338 (34%), Gaps = 67/338 (19%)
Query: 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT 289
+ + ++GH ++V FD SG+ + + S D +K+W + C+ + GH+ +++
Sbjct: 46 YETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVS 105
Query: 290 DLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS 349
+++ N + SAS D I++W + G + GH V + + + S S
Sbjct: 106 SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG---TLIASCS 162
Query: 350 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT 409
+D T R+W + + R S S+ ++ G ++
Sbjct: 163 NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 222
Query: 410 GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 469
GS D ++W+ + L GH+N V V F
Sbjct: 223 GSRDKTIKMWD---------VSTGMCLMTLVGHDNWVRGVLFHS---------------- 257
Query: 470 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPR 529
I++C+ D + +W +++R
Sbjct: 258 ----------GGKFILSCADDKTLRVWDYKNKR--------------------------- 280
Query: 530 GGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVW 567
+ + V + + +V+ +D + VW
Sbjct: 281 --CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 64.4 bits (155), Expect = 3e-11
Identities = 35/286 (12%), Positives = 70/286 (24%), Gaps = 41/286 (14%)
Query: 392 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQF 451
+ F+ +V V+ S D +VW+ + L GH + V + F
Sbjct: 17 RSPVTRVIFHPVFSVMVSASEDATIKVWDY---------ETGDFERTLKGHTDSVQDISF 67
Query: 452 SGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 511
+ K F + + + +
Sbjct: 68 DHSGKLLAS-------CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS 120
Query: 512 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD 571
+ +K+ + V M+ + D + + D + VW A
Sbjct: 121 RDKTIKMWEVQTGYCV------KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 174
Query: 572 GSLVHSLTGHTESTYVLDVHPFNPRIA-------------------MSAGYDGKTIVWDI 612
L H + P + + +S D +WD+
Sbjct: 175 KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV 234
Query: 613 WEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 658
G+ + + F G I+ D L + +
Sbjct: 235 STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR 280
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 109 bits (273), Expect = 4e-26
Identities = 46/375 (12%), Positives = 110/375 (29%), Gaps = 33/375 (8%)
Query: 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAL 299
RGH +V YVITG+DD++++++ L GH+G + L + L
Sbjct: 9 RGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGIL 67
Query: 300 VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
V+ +++ + ++ + ++ S D T +W
Sbjct: 68 VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYI--VTGSRDNTLHVWKL 125
Query: 360 RYSQFSPRIYIPRPSDAVAGRN-MAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARV 418
P V P + H + +G + V+GS D V
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185
Query: 419 WNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478
W+ + + + + ++++ + D+T + +
Sbjct: 186 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM--------------DTTIRIWDLE 231
Query: 479 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP 538
+ + AA +
Sbjct: 232 NGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH----------- 280
Query: 539 TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHS-LTGHTESTYVLDVHPFNPRI 597
++ I + +L + + + ++N G LVH+ + + + ++ +
Sbjct: 281 -HTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG--KTL 337
Query: 598 AMSAGYDGKTIVWDI 612
+ DG++ + +
Sbjct: 338 VAAVEKDGQSFLEIL 352
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 76.5 bits (186), Expect = 5e-15
Identities = 44/376 (11%), Positives = 102/376 (27%), Gaps = 35/376 (9%)
Query: 279 ASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPR 338
+ RGH + + + V + ++D +IRV+ + + L GH V A+ ++
Sbjct: 6 TTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG 64
Query: 339 PGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCC 398
L+S S D T R+WD + + + +
Sbjct: 65 ----GILVSGSTDRTVRVWDIKKGCCTHVFEGH------------------NSTVRCLDI 102
Query: 399 AFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVAS 458
N VTGS D VW + + + + + + V
Sbjct: 103 VEYKNIKYIVTGSRDNTLHVWKL------PKESSVPDHGEEHDYPLVFHTPEENPYFVGV 156
Query: 459 RFSLADSSKEDSTPKFKNSWFCHDNIVT--CSRDGSAIIWIPRSRRSHPKAARWTQAYHL 516
S + S +DN + + + +
Sbjct: 157 LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRC 216
Query: 517 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVH 576
+ + + ++ + L + A+
Sbjct: 217 ISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRK 276
Query: 577 SLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLV-DGKFSP 635
HT + + + + + +G + + ++++ G + + + F
Sbjct: 277 FSYHHTNLSAITTFYVSDNILV--SGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG 334
Query: 636 DGASIILSDDVGQLYI 651
+ D GQ ++
Sbjct: 335 KTLVAAVEKD-GQSFL 349
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.8 bits (140), Expect = 3e-09
Identities = 7/94 (7%), Positives = 30/94 (31%), Gaps = 5/94 (5%)
Query: 270 WSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI-SVLRGHTA 328
+ H +++ + + + + ++ ++ L G + + +
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDAD 325
Query: 329 AVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 362
+ ++ F + + + DG + +S
Sbjct: 326 QIWSVNFKGK----TLVAAVEKDGQSFLEILDFS 355
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.5 bits (129), Expect = 5e-08
Identities = 15/109 (13%), Positives = 33/109 (30%), Gaps = 3/109 (2%)
Query: 207 FTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRL 266
+ + A + K H N F S +++GS+++
Sbjct: 246 VGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQ- 304
Query: 267 VKIWSMETAYCLAS-CRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 314
I+++ + + + I + LVA+ D + L
Sbjct: 305 FNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEKDGQSFLEIL 352
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.5 bits (103), Expect = 8e-05
Identities = 16/123 (13%), Positives = 39/123 (31%)
Query: 547 VWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGK 606
++ +V+ D I V+++ + + L+GH + L ++ S +
Sbjct: 18 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVR 77
Query: 607 TIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYD 666
+ S R +D + I+ L++ + S D +
Sbjct: 78 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE 137
Query: 667 QFF 669
+
Sbjct: 138 HDY 140
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 104 bits (260), Expect = 1e-24
Identities = 62/380 (16%), Positives = 117/380 (30%), Gaps = 83/380 (21%)
Query: 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDL 291
+M+ + +RGH +Y + R +++ S D + IW T + + +
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103
Query: 292 AVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD 351
A + + VA D I ++ L + A T R Q+++SS D
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 163
Query: 352 GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS 411
TC +WD Q + + + + + +FV+G+
Sbjct: 164 TTCALWDIETGQQTTTFT--------------------GHTGDVMSLSLAPDTRLFVSGA 203
Query: 412 SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDST 471
D A++W+ + +GHE+D+N + F
Sbjct: 204 CDASAKLWDV---------REGMCRQTFTGHESDINAICFFP------------------ 236
Query: 472 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGG 531
+ T S D + ++ R+ + +
Sbjct: 237 --------NGNAFATGSDDATCRLFDLRADQELMTYSHDNI------------------- 269
Query: 532 PRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVH 591
G+ + +S R +LA D VW+A L GH L V
Sbjct: 270 --------ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321
Query: 592 PFNPRIAMSAGYDGKTIVWD 611
+A + +D +W+
Sbjct: 322 DDGMAVA-TGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 100 bits (248), Expect = 6e-23
Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 5/131 (3%)
Query: 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKI--WSMETAYCLASCRGHEGD 287
V++ + GH + + F +G TGSDD ++ + S
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG 272
Query: 288 ITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLS 347
IT ++ S + L+ + +D VW VL GH V+ + + + +
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG---MAVAT 329
Query: 348 SSDDGTCRIWD 358
S D +IW+
Sbjct: 330 GSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 93.6 bits (231), Expect = 8e-21
Identities = 42/194 (21%), Positives = 68/194 (35%), Gaps = 25/194 (12%)
Query: 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDI 288
++ Q GH V R ++G+ D K+W + C + GHE DI
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 229
Query: 289 TDLAVSSNNALVASASNDCIIRV--WRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLL 346
+ N A+ S+D R+ R L +T+++FS S LL
Sbjct: 230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK---SGRLLL 286
Query: 347 SSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTV 406
+ DD C +WDA + +++ C +G
Sbjct: 287 AGYDDFNCNVWDA--------------------LKADRAGVLAGHDNRVSCLGVTDDGMA 326
Query: 407 FVTGSSDTLARVWN 420
TGS D+ ++WN
Sbjct: 327 VATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 76.3 bits (186), Expect = 4e-15
Identities = 18/90 (20%), Positives = 33/90 (36%)
Query: 223 IAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR 282
+ + F +SGR ++ G DD +W A
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 283 GHEGDITDLAVSSNNALVASASNDCIIRVW 312
GH+ ++ L V+ + VA+ S D +++W
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 70.1 bits (170), Expect = 5e-13
Identities = 29/269 (10%), Positives = 72/269 (26%), Gaps = 22/269 (8%)
Query: 392 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQF 451
+I+ + + + V+ S D +W++ +++ + + V +
Sbjct: 55 LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYT---------TNKVHAIPLRSSWVMTCAY 105
Query: 452 SGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 511
+ D+ K + + + + + T
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165
Query: 512 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD 571
A G V + + D R ++ D +W+ +
Sbjct: 166 CALWDIETGQQTTTFTGHTGD----------VMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 572 GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFR--LV 629
G + TGH + P A + D ++D+ + Y +
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFA-TGSDDATCRLFDLRADQELMTYSHDNIICGIT 274
Query: 630 DGKFSPDGASIILSDDVGQLYILNTGQGE 658
FS G ++ D + + + +
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 62.4 bits (150), Expect = 1e-10
Identities = 45/332 (13%), Positives = 86/332 (25%), Gaps = 45/332 (13%)
Query: 322 VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRN 381
LRGH A + A+ + L+S+S DG IWD+ + I +
Sbjct: 50 TLRGHLAKIYAMHWGTDSR---LLVSASQDGKLIIWDSYTTNKVHAIPL----------- 95
Query: 382 MAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG 441
+S + CA+ +G G D + ++N +
Sbjct: 96 ---------RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL 146
Query: 442 HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSR 501
S D+T + G +
Sbjct: 147 SCCRFLDDNQIVT-----------SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 502 RSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD 561
+ + L G RQ +N I + + D
Sbjct: 196 TRLFVSGACDASAKL--------WDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 247
Query: 562 CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNP--RIAMSAGYDGKTIVWDIWEGIPIR 619
+++ + + + + V F+ R+ ++ D VWD +
Sbjct: 248 ATCRLFDLRADQELMTYSHDNIICGITSVS-FSKSGRLLLAGYDDFNCNVWDALKADRAG 306
Query: 620 IYEISRFRLVDGKFSPDGASIILSDDVGQLYI 651
+ R+ + DG ++ L I
Sbjct: 307 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 102 bits (255), Expect = 1e-23
Identities = 59/398 (14%), Positives = 113/398 (28%), Gaps = 58/398 (14%)
Query: 221 YAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLAS 280
Y + P+ + + + H + V C F G Y+ TG + +++ + +A
Sbjct: 40 YILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKT-TQVYRVSDGSLVAR 98
Query: 281 CRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPG 340
D + N + +S+ I V PDG ++ + +
Sbjct: 99 LSDDSAANKD--PENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV 156
Query: 341 SVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 400
+ Q R D G+ S +
Sbjct: 157 MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS---IEDGVTTVAVS 213
Query: 401 NANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 460
+G GS D RVW++ + +E +GH++ V V F+
Sbjct: 214 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES--GTGHKDSVYSVVFTRD------ 265
Query: 461 SLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPP 520
++V+ S D S +W ++
Sbjct: 266 --------------------GQSVVSGSLDRSVKLWNLQNAN-----------------N 288
Query: 521 PPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTG 580
P G + V + + ++ ++L+ D + W+ G+ + L G
Sbjct: 289 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG 348
Query: 581 HTESTYVLDV------HPFNPRIAMSAGYDGKTIVWDI 612
H S + V P A + D K +W
Sbjct: 349 HRNSVISVAVANGSSLGPEYNVFA-TGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 92.9 bits (229), Expect = 3e-20
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 15/139 (10%)
Query: 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA------------YCLASCRGH 284
+ GH+++VY +F R G+ V++GS DR VK+W+++ A C + GH
Sbjct: 248 ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH 307
Query: 285 EGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPG---S 341
+ + +A + N+ + S S D + W G P+ +L+GH +V ++A +
Sbjct: 308 KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPE 367
Query: 342 VYQLLSSSDDGTCRIWDAR 360
+ S D RIW +
Sbjct: 368 YNVFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 83.3 bits (204), Expect = 4e-17
Identities = 50/286 (17%), Positives = 93/286 (32%), Gaps = 47/286 (16%)
Query: 218 AACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYC 277
++ + + ++GH +Y + SG +++GS DR V+IW + T C
Sbjct: 138 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC 197
Query: 278 LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG-------LPISVLRGHTAAV 330
+ +G T + +A+ S D +RVW G GH +V
Sbjct: 198 SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV 257
Query: 331 TAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGP 390
++ F+ ++S S D + ++W+ + + P
Sbjct: 258 YSVVFTRDG---QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG-------- 306
Query: 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQ 450
+ A N ++GS D W+ + + + +L GH N V V
Sbjct: 307 HKDFVLSVATTQNDEYILSGSKDRGVLFWDK---------KSGNPLLMLQGHRNSVISVA 357
Query: 451 FSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW 496
+ + ++ T S D A IW
Sbjct: 358 VANGSSLGP--------------------EYNVFATGSGDCKARIW 383
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 78.7 bits (192), Expect = 1e-15
Identities = 55/371 (14%), Positives = 109/371 (29%), Gaps = 36/371 (9%)
Query: 298 ALVASASNDCIIRVWRLPDGLPISVLR--GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355
AL ++ I+ LP + + + + HT+ V + FS + L++ + T +
Sbjct: 31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDG----EYLATGCNKTTQ 86
Query: 356 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTL 415
++ R+ S A +SS+ I F+ +G TG+ D L
Sbjct: 87 VYRVSDGSLVARLS--DDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRL 144
Query: 416 ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475
R+W+ Q + + + + + R + + T +
Sbjct: 145 IRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE 204
Query: 476 NSWFCH-------DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPP 528
+ I S D + +W + +
Sbjct: 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER------------LDSENESGTG 252
Query: 529 RGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVL 588
++ T G +++ SLD L + + + S +T +VL
Sbjct: 253 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL 312
Query: 589 DV--HPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE------ISRFRLVDGKFSPDGASI 640
V + I S D + WD G P+ + + IS P+
Sbjct: 313 SVATTQNDEYIL-SGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 371
Query: 641 ILSDDVGQLYI 651
+ I
Sbjct: 372 ATGSGDCKARI 382
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 64.4 bits (155), Expect = 4e-11
Identities = 42/364 (11%), Positives = 93/364 (25%), Gaps = 49/364 (13%)
Query: 318 LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAV 377
+P + H+ + SV L + +++ +PR D
Sbjct: 4 VPYNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPA---------LPREIDVE 54
Query: 378 AGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNA---------CKPNTDD 428
+++ +S + C F+ +G TG + T +V+ + +
Sbjct: 55 LHKSLDHTSV-------VCCVKFSNDGEYLATGCNKTT-QVYRVSDGSLVARLSDDSAAN 106
Query: 429 SDQPNHEIDVLSGHENDVNYVQFS--GCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVT 486
D N + + V FS G +A+ +++ + I+
Sbjct: 107 KDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT------GAEDRLIRIWDIENRKIVMILQ 160
Query: 487 CSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMI 546
+ S + + + +P I
Sbjct: 161 GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYI 220
Query: 547 VWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGK 606
+R V + D S S TGH +S Y + + S D
Sbjct: 221 AAGSLDRAV--RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV-SGSLDRS 277
Query: 607 TIVWDIWEGIPIRIYEISRF------------RLVDGKFSPDGASIILSDDVGQLYILNT 654
+W++ + ++ + + I+ + +
Sbjct: 278 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK 337
Query: 655 GQGE 658
G
Sbjct: 338 KSGN 341
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 96.1 bits (237), Expect = 2e-21
Identities = 39/403 (9%), Positives = 97/403 (24%), Gaps = 83/403 (20%)
Query: 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR------GHEGDITDLAV 293
+ H ++ + ++ S D +K+W + H+ + + V
Sbjct: 11 KAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68
Query: 294 -------SSNNALVASASNDCIIRVWRLPDGLPISVLRGHT----------AAVTAIAFS 336
+ LVA+ S + +R+ + + A+ +
Sbjct: 69 LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG 128
Query: 337 PRPGSVYQ--LLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394
+ L+++ GT IW S + + S S
Sbjct: 129 ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT--PSQF 186
Query: 395 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 454
+ G + TG ++ ++ + + H + S V +
Sbjct: 187 ATSVDISERGLI-ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF------ 239
Query: 455 AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 514
+ S + +
Sbjct: 240 -----------------------SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT 276
Query: 515 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSL 574
H V + ++ + +A D ++ W+
Sbjct: 277 H-------------SSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER 323
Query: 575 VHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI----VWDIW 613
+ +L H + + +A+ G ++ V+D+
Sbjct: 324 ITTLNMHCDD-----IEIEEDILAVDE--HGDSLAEPGVFDVK 359
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 82.2 bits (201), Expect = 9e-17
Identities = 31/380 (8%), Positives = 85/380 (22%), Gaps = 51/380 (13%)
Query: 320 ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAG 379
+ + H A + +++ +S S DG ++WD +
Sbjct: 7 ANAGKAHDADIFSVSACNS-----FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61
Query: 380 RNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVL 439
+ T S + + ++D+L
Sbjct: 62 GLHHVDVLQA-------IERDAFELCLVATTSFSGDLLFYR-ITREDETKKVIFEKLDLL 113
Query: 440 S--GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWI 497
++ +++ ++ T D + + + S + +
Sbjct: 114 DSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL 173
Query: 498 PRSRRSHPKAARWTQA---------------YHLKVPPPPMPPQPPRGGPRQRILPTPRG 542
+ S +++ + +++ + ++
Sbjct: 174 QGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS 233
Query: 543 VNMIVWSLDNRFVLAAIMDCRICVWNAAD----------------GSLVHSLTGHTESTY 586
+ + +S + A + H+
Sbjct: 234 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 293
Query: 587 VLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS----RFRLVDGKFSPDGASIIL 642
L + + AG+DGK WD+ I + G S+
Sbjct: 294 SLSFNDSGETLCS-AGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAE 352
Query: 643 SDDVGQLYILNTGQGESQKD 662
++ + D
Sbjct: 353 PGVFDVKFLKKGWRSGMGAD 372
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.8 bits (122), Expect = 4e-07
Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 7/121 (5%)
Query: 220 CYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLA 279
I S Q H + V F+ SG + + D ++ W ++T +
Sbjct: 266 GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERIT 325
Query: 280 SCRGHEGDI----TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAF 335
+ H DI LAV + +A + V L G + ++ +
Sbjct: 326 TLNMHCDDIEIEEDILAVDEHGDSLAEPG---VFDVKFLKKGWRSGMGADLNESLCCVCL 382
Query: 336 S 336
Sbjct: 383 D 383
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.6 bits (106), Expect = 4e-05
Identities = 15/146 (10%), Positives = 38/146 (26%), Gaps = 16/146 (10%)
Query: 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSM---------------- 272
+ ++ + + N++ F G + D ++
Sbjct: 217 PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT 276
Query: 273 ETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTA 332
++ H + L+ + + + SA D +R W + I+ L H +
Sbjct: 277 HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEI 336
Query: 333 IAFSPRPGSVYQLLSSSDDGTCRIWD 358
L+ +
Sbjct: 337 EEDILAVDEHGDSLAEPGVFDVKFLK 362
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 91.8 bits (226), Expect = 3e-20
Identities = 45/385 (11%), Positives = 91/385 (23%), Gaps = 65/385 (16%)
Query: 270 WSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAA 329
W +GH+ + + + S S+D ++VW G + L GHT
Sbjct: 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59
Query: 330 VTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 389
V + + + + V ++
Sbjct: 60 VWSSQMRDNIIISGS-------TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVS 112
Query: 390 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYV 449
G A S + + V +
Sbjct: 113 GSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHT 172
Query: 450 QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAAR 509
+ T + + F ++V+ S D S +W
Sbjct: 173 L-----------------QGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE---------- 205
Query: 510 WTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL--DNRFVLAAIMDCRICVW 567
+ T G + + + +++ D + +W
Sbjct: 206 -----------------------TGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIW 242
Query: 568 NAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFR 627
+ G + +L G + + FN +++ DG +WD+ G IR
Sbjct: 243 DIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG 302
Query: 628 LVDG-----KFSPDGASIILSDDVG 647
G + S + G
Sbjct: 303 GSGGVVWRIRASNTKLVCAVGSRNG 327
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 84.9 bits (208), Expect = 8e-18
Identities = 70/429 (16%), Positives = 131/429 (30%), Gaps = 141/429 (32%)
Query: 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT 289
++++ K ++GH + V G +++GSDD +K+WS T CL + GH G +
Sbjct: 3 RGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW 61
Query: 290 DLAVSSN--------------------------------------NALVASASNDCIIRV 311
+ N V S S D +RV
Sbjct: 62 SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRV 121
Query: 312 WRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIP 371
W + G + VL GH AAV + + R +++S + D ++WD +
Sbjct: 122 WDIETGQCLHVLMGHVAAVRCVQYDGR-----RVVSGAYDFMVKVWDPETETCLHTL--- 173
Query: 372 RPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQ 431
Q H + +G V+GS DT RVW+ +
Sbjct: 174 -------------------QGHTNRVYSLQFDGIHVVSGSLDTSIRVWDV---------E 205
Query: 432 PNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG 491
+ I L+GH++ + ++ + +V+ + D
Sbjct: 206 TGNCIHTLTGHQSLTSGMELKD----------------------------NILVSGNADS 237
Query: 492 SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD 551
+ IW ++ + + + +
Sbjct: 238 TVKIWDIKTGQCLQTLQGPNKHQS----------------------------AVTCLQFN 269
Query: 552 NRFVLAAIMDCRICVWNAADGSLVHSLT-----GHTESTYVLDVHPFNPRIAMSAGYDG- 605
FV+ + D + +W+ G + +L G + + A +G
Sbjct: 270 KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCA-VGSRNGT 328
Query: 606 ---KTIVWD 611
K +V D
Sbjct: 329 EETKLLVLD 337
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 90.3 bits (222), Expect = 1e-19
Identities = 39/343 (11%), Positives = 94/343 (27%), Gaps = 43/343 (12%)
Query: 291 LAVSSNNALVA-SASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS 349
V+++ + D +I I+ L H V A+ S + + +
Sbjct: 15 FHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNP----TRHVYTG 69
Query: 350 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT 409
G ++WD + + + + + I C +G +
Sbjct: 70 GKGCVKVWDISHPGNKSPVSQLDCLN---------------RDNYIRSCKLLPDGCTLIV 114
Query: 410 GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 469
G + +W+ P + + C ++ D +
Sbjct: 115 GGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT 174
Query: 470 STPKFKNSW---------FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPP 520
+F+ + T D + W R R + +Q + L P
Sbjct: 175 LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCP 234
Query: 521 P-----------PMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 569
+ + ++ V + ++ ++ ++ D + W
Sbjct: 235 TGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT 294
Query: 570 ADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612
G+ + + S D+ + I + D K V+++
Sbjct: 295 PYGASIFQS-KESSSVLSCDISVDDKYIV-TGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.8 bits (169), Expect = 7e-13
Identities = 22/182 (12%), Positives = 51/182 (28%), Gaps = 5/182 (2%)
Query: 180 HPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRV 239
W VR G + + + +
Sbjct: 161 SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ 220
Query: 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAL 299
+ ++ + +G ++ G + V++ + HE + L +
Sbjct: 221 HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKW 279
Query: 300 VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
S D ++ WR P G I +++V + S +++ S D +++
Sbjct: 280 FVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDK---YIVTGSGDKKATVYEV 335
Query: 360 RY 361
Y
Sbjct: 336 IY 337
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.5 bits (168), Expect = 8e-13
Identities = 18/147 (12%), Positives = 42/147 (28%), Gaps = 11/147 (7%)
Query: 168 SYDRDKGQNEIDHPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPS 227
+ D D H + Q+ LG G + ++
Sbjct: 200 TGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV------ 253
Query: 228 TMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD 287
+ ++ H + V F G++ ++ D L+ W +
Sbjct: 254 ----NKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSS 308
Query: 288 ITDLAVSSNNALVASASNDCIIRVWRL 314
+ +S ++ + + S D V+ +
Sbjct: 309 VLSCDISVDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.1 bits (162), Expect = 5e-12
Identities = 38/338 (11%), Positives = 73/338 (21%), Gaps = 62/338 (18%)
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLA-----SCRGHEGDITDLAVSS 295
H V R+V TG VK+W + + C + I +
Sbjct: 49 NHGEVVCAVTISNPTRHVYTGGKGC-VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107
Query: 296 NNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355
+ + + +W + + L+SS
Sbjct: 108 DGCTLIVGGEASTLSIWD---------------------LAAPTPRIKAELTSSAPACYA 146
Query: 356 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTL 415
+ + S+ N + C + +GT TG D
Sbjct: 147 LAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT 206
Query: 416 ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475
R W+ + +I L + + K
Sbjct: 207 VRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHES 266
Query: 476 NSW---FCHDN--IVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRG 530
F + V+ +D W
Sbjct: 267 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPY------------------------------ 296
Query: 531 GPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWN 568
G V S+D+++++ D + V+
Sbjct: 297 GASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (125), Expect = 2e-07
Identities = 30/241 (12%), Positives = 58/241 (24%), Gaps = 26/241 (10%)
Query: 180 HPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRV 239
+ + + C + +++
Sbjct: 120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF 179
Query: 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAL 299
+GH + C G + TG D V+ W + I L
Sbjct: 180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ-LQQHDFTSQIFSLGYCPTGEW 238
Query: 300 VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
+A + V + + H + V ++ F+ +S+ D W
Sbjct: 239 LAVGMESSNVEVLHVNKPDKYQL-HLHESCVLSLKFAY---CGKWFVSTGKDNLLNAWRT 294
Query: 360 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVW 419
Y + +S + C + + VTGS D A V+
Sbjct: 295 PYGASIFQS---------------------KESSSVLSCDISVDDKYIVTGSGDKKATVY 333
Query: 420 N 420
Sbjct: 334 E 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.1 bits (123), Expect = 3e-07
Identities = 28/291 (9%), Positives = 60/291 (20%), Gaps = 40/291 (13%)
Query: 392 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQF 451
+ + TG + +VW+ + + P ++D +N + +
Sbjct: 51 GEVVCAVTISNPTRHVYTGGKGCV-KVWDI---SHPGNKSPVSQLD-CLNRDNYIRSCKL 105
Query: 452 SGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 511
+ + S +T S + I +
Sbjct: 106 LPD--GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG 163
Query: 512 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD 571
+ + Q + + + V + + +
Sbjct: 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF 223
Query: 572 GSLVHSLT-------------------------------GHTESTYVLDVHPFNPRIAMS 600
S + SL H L S
Sbjct: 224 TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFV-S 282
Query: 601 AGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYI 651
G D W G I + S ++ S D I+ + +
Sbjct: 283 TGKDNLLNAWRTPYGASIFQSKESS-SVLSCDISVDDKYIVTGSGDKKATV 332
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (111), Expect = 8e-06
Identities = 36/276 (13%), Positives = 58/276 (21%), Gaps = 55/276 (19%)
Query: 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAL 299
N + G +I G + + IW + A++ +
Sbjct: 94 LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS 153
Query: 300 VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD--------- 350
S + V + A D
Sbjct: 154 KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213
Query: 351 --------DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ--IFCCAF 400
D T +I+ Y + + S V ++ H+ + F
Sbjct: 214 EGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKF 273
Query: 401 NANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 460
G FV+ D L W P S + V S
Sbjct: 274 AYCGKWFVSTGKDNLLNAWRT----------PYGASIFQSKESSSVLSCDIS-------- 315
Query: 461 SLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW 496
D IVT S D A ++
Sbjct: 316 --VDDKY----------------IVTGSGDKKATVY 333
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 88.8 bits (218), Expect = 3e-19
Identities = 42/333 (12%), Positives = 85/333 (25%), Gaps = 31/333 (9%)
Query: 286 GDITDLAVSSNNALVASASNDC-IIRVWRLPDG--LPISVLRGH-TAAVTAIAFSPRPGS 341
T L+ +A +R D P+ GH ++ VT + FSP GS
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77
Query: 342 VYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFN 401
Y L S + G +W + + S + + S + I +++
Sbjct: 78 QY-LCSGDESGKVIVWGWTFDKESNSVE------------VNVKSEFQVLAGPISDISWD 124
Query: 402 ANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFS 461
G + + + + ++ + S
Sbjct: 125 FEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSV 184
Query: 462 LADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPP 521
+ + + V + S K + + +
Sbjct: 185 VFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI 244
Query: 522 PMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH 581
+P +G + LD++ D I VW+ V T
Sbjct: 245 EDDQEPVQG------------GIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLD 292
Query: 582 TESTYV--LDVHPFNPRIAMSAGYDGKTIVWDI 612
+ + V +S DG +++
Sbjct: 293 KQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.2 bits (141), Expect = 2e-09
Identities = 18/151 (11%), Positives = 45/151 (29%), Gaps = 3/151 (1%)
Query: 167 LSYDRDKGQNEIDHPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKP 226
D G P +G +R++ ++ +
Sbjct: 175 SMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD 234
Query: 227 STMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEG 286
+ ++ I+ + A+ + T D +++W + T+ C+ +
Sbjct: 235 GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ 294
Query: 287 DITDLAVS---SNNALVASASNDCIIRVWRL 314
+ + V + N + S S D + + L
Sbjct: 295 QLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.3 bits (131), Expect = 3e-08
Identities = 17/179 (9%), Positives = 42/179 (23%), Gaps = 4/179 (2%)
Query: 184 HMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHR 243
+ + +R R+ ++ + + + +
Sbjct: 146 WDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQG 205
Query: 244 NAVYCA----IFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAL 299
+ V V + S E + + ++
Sbjct: 206 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQK 265
Query: 300 VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358
A+ D IRVW + + + +++S S DGT ++
Sbjct: 266 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.5 bits (129), Expect = 5e-08
Identities = 31/327 (9%), Positives = 76/327 (23%), Gaps = 31/327 (9%)
Query: 321 SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGR 380
S R T +++ P ++ R D S+ P +
Sbjct: 14 STQRNF---TTHLSYDPTTNAI--AYPCGKSAFVRCLDDGDSKVPPVVQF---------- 58
Query: 381 NMAPSSSAGPQSHQIFCCAF--NANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDV 438
G S + F +G VW + + + +
Sbjct: 59 -------TGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG-WTFDKESNSVEVNVKSE 110
Query: 439 LSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIP 498
++ + + R D+ F + + I
Sbjct: 111 FQVLAGPISDISWDFE---GRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHS-QRINACH 166
Query: 499 RSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA 558
+ ++ + P + R V S + + +
Sbjct: 167 LKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS 226
Query: 559 IMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 618
+ + + + + + + G D VWD+ +
Sbjct: 227 DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV 286
Query: 619 RIYEISRFRLVDGK--FSPDGASIILS 643
+ + + + +L + + G I+S
Sbjct: 287 QKWTLDKQQLGNQQVGVVATGNGRIIS 313
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (109), Expect = 1e-05
Identities = 30/306 (9%), Positives = 71/306 (23%), Gaps = 72/306 (23%)
Query: 231 QKMQNIKRVRGHR-NAVYCAIF--DRSGRYVITGSDDRLVKIWSMET--------AYCLA 279
K+ + + GH + V F + +Y+ +G + V +W +
Sbjct: 50 SKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKS 109
Query: 280 SCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRP 339
+ G I+D++ + + S+ + A +
Sbjct: 110 EFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQ 169
Query: 340 GSVYQLLSSSDDGTCRIWDA-----------------------------RYSQFSPRIYI 370
+ ++ DDG+ + +
Sbjct: 170 SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK 229
Query: 371 PRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD 430
D +G + + F T +D RVW+
Sbjct: 230 ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV--------- 280
Query: 431 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRD 490
+ + + + + Q + I++ S D
Sbjct: 281 TTSKCVQKWTLDKQQLGNQQVGV-----------------------VATGNGRIISLSLD 317
Query: 491 GSAIIW 496
G+ +
Sbjct: 318 GTLNFY 323
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 85.3 bits (209), Expect = 3e-18
Identities = 34/328 (10%), Positives = 67/328 (20%), Gaps = 36/328 (10%)
Query: 286 GDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQL 345
G L + + + + + + H+ T SP S Y
Sbjct: 18 GTAVVLGNTPAGDKIQYCNGTSVY-TVPVGSLTDTEIYTEHSHQTTVAKTSP---SGYYC 73
Query: 346 LSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT 405
S G RIWD + + IP P S A
Sbjct: 74 ASGDVHGNVRIWDTTQTTHILKTTIPV--------FSGPVKDISWDSESKRIAAVGEGRE 125
Query: 406 VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 465
F + + + + + + +
Sbjct: 126 RFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF 185
Query: 466 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPP 525
+ + DG+ +++ +
Sbjct: 186 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT 245
Query: 526 QPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTEST 585
P D + +A D I +WN A + ++ T
Sbjct: 246 WSP----------------------DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIE 283
Query: 586 -YVLDVHPFNPRIAMSAGYDGKTIVWDI 612
L + + S +G +
Sbjct: 284 DQQLGIIWTKQALV-SISANGFINFVNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 55.7 bits (132), Expect = 2e-08
Identities = 17/134 (12%), Positives = 35/134 (26%), Gaps = 1/134 (0%)
Query: 180 HPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRV 239
P +R G Y + + +
Sbjct: 175 EGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKN 234
Query: 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEG-DITDLAVSSNNA 298
H +V+ + G + + S D+ +KIW++ T + + L +
Sbjct: 235 VAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ 294
Query: 299 LVASASNDCIIRVW 312
+ S S + I
Sbjct: 295 ALVSISANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 54.5 bits (129), Expect = 4e-08
Identities = 24/262 (9%), Positives = 55/262 (20%), Gaps = 9/262 (3%)
Query: 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVAS 302
R +G + + V + + H T S + AS
Sbjct: 17 RGTAVVLGNTPAGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCAS 75
Query: 303 ASNDCIIRVWRLPDG--LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360
+R+W + + + + V I++ + + +
Sbjct: 76 GDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT 135
Query: 361 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ R ++V + P T T
Sbjct: 136 GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSV 195
Query: 421 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFC 480
P+ + ++ + D +
Sbjct: 196 RYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV------AHSGSVFGLTWSPD 249
Query: 481 HDNIVTCSRDGSAIIWIPRSRR 502
I + S D + IW + +
Sbjct: 250 GTKIASASADKTIKIWNVATLK 271
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 51.4 bits (121), Expect = 4e-07
Identities = 23/180 (12%), Positives = 47/180 (26%), Gaps = 4/180 (2%)
Query: 180 HPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRV 239
+ + F + A + ++ K V
Sbjct: 133 FDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFV 192
Query: 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAL 299
R ++F +G + + + H G + L S +
Sbjct: 193 HSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK 252
Query: 300 VASASNDCIIRVWRLPDGLPISVLRGHT-AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358
+ASAS D I++W + + T + + L+S S +G +
Sbjct: 253 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA---LVSISANGFINFVN 309
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.9 bits (117), Expect = 1e-06
Identities = 33/335 (9%), Positives = 71/335 (21%), Gaps = 41/335 (12%)
Query: 321 SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGR 380
RG + +P + + +
Sbjct: 14 RTARGT---AVVLGNTPAG----DKIQYCNGTSVYTVPVG-------------------- 46
Query: 381 NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD-TLARVWNACKPNTDDSDQPNHEIDVL 439
++ + SHQ + +G +G + + + P V
Sbjct: 47 SLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVK 106
Query: 440 SGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPR 499
+ + + RF ++ N V I
Sbjct: 107 DISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGS 166
Query: 500 SRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI 559
+ + R P + + G IV
Sbjct: 167 DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVL----------- 215
Query: 560 MDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIR 619
+ H+ S + L P +IA SA D +W++ +
Sbjct: 216 YNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA-SASADKTIKIWNVATLKVEK 274
Query: 620 IYEI-SRFRLVDGKFSPDGASIILSDDVGQLYILN 653
+ +R +++ G + +N
Sbjct: 275 TIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.7 bits (114), Expect = 3e-06
Identities = 41/298 (13%), Positives = 81/298 (27%), Gaps = 65/298 (21%)
Query: 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIW--SMETAYCLASCRGHEGD 287
V + + + H + A SG Y +G V+IW + T + G
Sbjct: 45 VGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGP 104
Query: 288 ITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLS 347
+ D++ S + +A+ S A + +P ++++S
Sbjct: 105 VKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIIS 164
Query: 348 SSDDGTCRIW-----------------------------DARYSQFSPRIYIPRPSDAVA 378
SDD T I+ A +
Sbjct: 165 GSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT 224
Query: 379 GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDV 438
G S S +F ++ +GT + S+D ++WN + + I V
Sbjct: 225 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV------ATLKVEKTIPV 278
Query: 439 LSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW 496
+ E+ + ++ +V+ S +G
Sbjct: 279 GTRIEDQQLGIIWTK----------------------------QALVSISANGFINFV 308
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 82.6 bits (202), Expect = 5e-17
Identities = 38/348 (10%), Positives = 85/348 (24%), Gaps = 27/348 (7%)
Query: 283 GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR---GHTAAVTAIAFSPRP 339
+ I+D+ + + +L+ S D + V++ L + + F
Sbjct: 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68
Query: 340 GSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCA 399
+ + S + ++ R +
Sbjct: 69 D---LQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIE 125
Query: 400 FNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASR 459
+ N N + N ++ + + V + + C +
Sbjct: 126 VIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNG 185
Query: 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVP 519
+S + + S DG + + +++ ++
Sbjct: 186 TI-EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN 244
Query: 520 PPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT 579
P N I +S ++F+ A D I WN + +
Sbjct: 245 LKDTNLAYPV--------------NSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA 290
Query: 580 GHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW----EGIPIRIYEI 623
E + V+ + + I A D E IY I
Sbjct: 291 KFNEDS-VVKIAC-SDNILCLATSDDTFKTNAAIDQTIELNASSIYII 336
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 67.6 bits (163), Expect = 4e-12
Identities = 36/333 (10%), Positives = 82/333 (24%), Gaps = 29/333 (8%)
Query: 320 ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAG 379
+ + + ++ I P LL +S DG+ ++
Sbjct: 4 VQIEQAPKDYISDIKIIPSKS---LLLITSWDGSLTVYKFD-----------------IQ 43
Query: 380 RNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVL 439
+ H + CC F N + + + + + N+E ++
Sbjct: 44 AKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLG 103
Query: 440 SGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPR 499
+ + + D + ++ V
Sbjct: 104 ICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRL 163
Query: 500 SRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI 559
+ +W + + + + R L S+D R +
Sbjct: 164 IVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFF 223
Query: 560 MDCRICVWNAADGSLVH-----SLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614
D ++ + T ++ P + +AG DG W++
Sbjct: 224 DDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQT 282
Query: 615 GIPIRIYEISRFRLVDGKFSPDGASIIL--SDD 645
I+ + K + + L SDD
Sbjct: 283 RKKIKNFA-KFNEDSVVKIACSDNILCLATSDD 314
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.2 bits (131), Expect = 4e-08
Identities = 19/147 (12%), Positives = 36/147 (24%), Gaps = 22/147 (14%)
Query: 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA---------------YCLASCRGHEG 286
A+ + S D V + +
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252
Query: 287 DITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLL 346
+ + S + + +A +D II W L I + + + L
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDN---ILC 308
Query: 347 SSSDDGTCRIWDARYSQF---SPRIYI 370
++ D T + A + IYI
Sbjct: 309 LATSDDTFKTNAAIDQTIELNASSIYI 335
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.4 bits (121), Expect = 6e-07
Identities = 11/111 (9%), Positives = 41/111 (36%), Gaps = 5/111 (4%)
Query: 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDI 288
+ + + V F +++ T D ++ W+++T + + +
Sbjct: 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NED 295
Query: 289 TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRP 339
+ + ++ ++ ++ A++D + D + + +++ I P
Sbjct: 296 SVVKIACSDNILCLATSDDTFKTNAAID----QTIELNASSIYIIFDYENP 342
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 82.2 bits (201), Expect = 7e-17
Identities = 40/390 (10%), Positives = 88/390 (22%), Gaps = 56/390 (14%)
Query: 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET--AYCLASCRGHEGDITDLAVSSNNAL 299
+ C +++ + ++ V I+ + + H G +T + + ++
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65
Query: 300 VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
+ + D VW L L A P S I
Sbjct: 66 IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKF-AVGSGSRVISICYF 124
Query: 360 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFV--TGSSDTLAR 417
+ + S + + A + + + + R
Sbjct: 125 EQENDWWVCKHIKK------PIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEER 178
Query: 418 VWNACKPNTDDSDQPNHEIDVLSGHENDVN-------YVQFSGCAVASRFSLADSSKEDS 470
+ + E G + V S + +
Sbjct: 179 PAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT 238
Query: 471 TPKFKNSWFCH-----DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPP 525
++V D +++ S + + L V
Sbjct: 239 LASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAG-----KLSFGGRLDV------- 286
Query: 526 QPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTEST 585
P+ + + RF +D + +A + H S
Sbjct: 287 --------------PKQSSQRGLTARERFQN---LDKKASSEGSAAAG-AGLDSLHKNSV 328
Query: 586 YVLDVHP---FNPRIAMSAGYDGKTIVWDI 612
+ V + G DG +WD+
Sbjct: 329 SQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 78.0 bits (190), Expect = 2e-15
Identities = 37/330 (11%), Positives = 88/330 (26%), Gaps = 67/330 (20%)
Query: 288 ITDLAVSSNNALVASASNDCIIRVWRLPDG--LPISVLRGHTAAVTAIAFSPRPGSVYQL 345
I+ A + + +A N+ + ++ + + L+ H VT + ++P ++
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN---RI 66
Query: 346 LSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT 405
++ D +W + + P + I R + A AP+
Sbjct: 67 VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI------- 119
Query: 406 VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 465
+ + N + + + V + +
Sbjct: 120 -----------SICYFEQENDWWVCKHIKKP-----IRSTVLSLDW-------------- 149
Query: 466 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPP 525
+ S D I+ + + A +
Sbjct: 150 ------------HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES 197
Query: 526 QPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTEST 585
G V+ + +S + V D +C+ +A V +L T
Sbjct: 198 SSSCGW-----------VHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPL 246
Query: 586 YVLDVHPFNPRIAMSAGYDGKTIVWDIWEG 615
+ + +A AG+D +++
Sbjct: 247 LAVTFITESSLVA--AGHDCFPVLFTYDSA 274
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 69.1 bits (167), Expect = 1e-12
Identities = 20/133 (15%), Positives = 36/133 (27%), Gaps = 3/133 (2%)
Query: 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDI 288
K + + + F V G D +++ ++A S G
Sbjct: 229 DADKKMAVATLASETLPLLAVTFITESSLVAAGHDCF-PVLFTYDSAAGKLSFGGRLDVP 287
Query: 289 TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSP-RPGSVYQLLS 347
+ A + D + H +V+ I+ Q +
Sbjct: 288 KQSSQRGLTARERFQNLDKKASSEGSAAA-GAGLDSLHKNSVSQISVLSGGKAKCSQFCT 346
Query: 348 SSDDGTCRIWDAR 360
+ DG IWD R
Sbjct: 347 TGMDGGMSIWDVR 359
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 51.8 bits (122), Expect = 4e-07
Identities = 23/196 (11%), Positives = 52/196 (26%), Gaps = 29/196 (14%)
Query: 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDI 288
+ + + V+ F +G V S D V + + +A+ +
Sbjct: 187 KMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPL 246
Query: 289 TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSS 348
+ + ++LVA+ DC ++ G +
Sbjct: 247 LAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQR----------GL 295
Query: 349 SDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG---- 404
+ + D + S G A + + + + + G
Sbjct: 296 TARERFQNLDKKAS--------------SEGSAAAGAGLDSLHKNSVSQISVLSGGKAKC 341
Query: 405 TVFVTGSSDTLARVWN 420
+ F T D +W+
Sbjct: 342 SQFCTTGMDGGMSIWD 357
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 79.6 bits (194), Expect = 2e-16
Identities = 34/296 (11%), Positives = 71/296 (23%), Gaps = 16/296 (5%)
Query: 319 PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVA 378
+ + GH +TA+ +P L+S S DG W + I ++ A
Sbjct: 5 VLKTISGHNKGITALTVNP-------LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKA 57
Query: 379 GR-NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEID 437
+ + + T + +
Sbjct: 58 QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV 117
Query: 438 VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWI 497
L+ + V+ Q + K + + + +I
Sbjct: 118 RLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYI 177
Query: 498 PRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA 557
Y L+ R I P ++ V
Sbjct: 178 AAGDVMG-----KILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVAT 232
Query: 558 AIMDCRICVWNAAD-GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612
+D I +++ ++ +L H + L + S+G D W++
Sbjct: 233 GSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PSTLV-SSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.4 bits (144), Expect = 5e-10
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 5/90 (5%)
Query: 270 WSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL-PISVLRGHTA 328
+ + + LVA+ S D I ++ + + I L H
Sbjct: 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD 259
Query: 329 AVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358
V + + L+SS D + W+
Sbjct: 260 GVNNLLWETPS----TLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.9 bits (135), Expect = 6e-09
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
Query: 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY-CLASCRGHEGD 287
+ I + + V TGS D + I+S++ + + H+
Sbjct: 201 WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDG 260
Query: 288 ITDLAVSSNNALVASASNDCIIRVWR 313
+ +L + + LV S+ D I+ W
Sbjct: 261 VNNLLWETPSTLV-SSGADACIKRWN 285
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 78.1 bits (190), Expect = 8e-16
Identities = 49/338 (14%), Positives = 87/338 (25%), Gaps = 46/338 (13%)
Query: 277 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR-GHTAAVTAIAF 335
GH IT L+ S++ + SA + I W + G+ V H +T I
Sbjct: 4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63
Query: 336 SPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 395
+ + L + S D ++ A S + S Q
Sbjct: 64 TSK----GDLFTVSWDDHLKVVPAGGSGVDSSKAVAN-----------------KLSSQP 102
Query: 396 FCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCA 455
A +A+G + V +A + S + V
Sbjct: 103 LGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHV 162
Query: 456 VASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYH 515
+ K P S +N + IP S ++ + A
Sbjct: 163 YKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTF 222
Query: 516 LKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLV 575
+ P N + +D + VWN S
Sbjct: 223 HTAKVACVSWSPD-----------------------NVRLATGSLDNSVIVWNMNKPSDH 259
Query: 576 HSLTGHTESTYVLDVHPFNP-RIAMSAGYDGKTIVWDI 612
+ + ++ + +SAG D W++
Sbjct: 260 PIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 68.9 bits (166), Expect = 9e-13
Identities = 35/334 (10%), Positives = 80/334 (23%), Gaps = 43/334 (12%)
Query: 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDLAVS 294
+ GH A+ G+ + + + + W + T H IT + +
Sbjct: 5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64
Query: 295 SNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354
S L + +D + V G+ S + + + + +++
Sbjct: 65 SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIA-VAACYKHIA 123
Query: 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDT 414
+ ++ + + + +A A + V + T
Sbjct: 124 IYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEIT 183
Query: 415 LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 474
N ++ + + ++ +
Sbjct: 184 SVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH--------------TAKVAC 229
Query: 475 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQ 534
+ + + T S D S I+W HP
Sbjct: 230 VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPI---------------------------I 262
Query: 535 RILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWN 568
V L+ +++A D I WN
Sbjct: 263 IKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 58.1 bits (138), Expect = 3e-09
Identities = 34/332 (10%), Positives = 64/332 (19%), Gaps = 46/332 (13%)
Query: 322 VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRN 381
V GH A+TA++ S G L S+ +G WD
Sbjct: 7 VRYGHNKAITALSSSA-DGKT--LFSADAEGHINSWDIS-------------------TG 44
Query: 382 MAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG 441
++ + I + G +F D L V N G
Sbjct: 45 ISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLG 104
Query: 442 HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSR 501
+ V S + S + +
Sbjct: 105 LAVSADGDIAVAA---------------CYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ 149
Query: 502 RSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD 561
+ + + P +
Sbjct: 150 FVAVGGQDSKVHVY-------KLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRK 202
Query: 562 CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI--WEGIPIR 619
+ + + + D IVW++ PI
Sbjct: 203 VIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPII 262
Query: 620 IYEISRFRLVDGKFSPDGASIILSDDVGQLYI 651
I V+ + +I+ + +
Sbjct: 263 IKGAHAMSSVNSVIWLNETTIVSAGQDSNIKF 294
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 52.3 bits (123), Expect = 2e-07
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 2/89 (2%)
Query: 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA--YCLASCRGHEG 286
++ + H V C + + TGS D V +W+M + + H
Sbjct: 210 NNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAM 269
Query: 287 DITDLAVSSNNALVASASNDCIIRVWRLP 315
+ + N + SA D I+ W +P
Sbjct: 270 SSVNSVIWLNETTIVSAGQDSNIKFWNVP 298
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.6 bits (116), Expect = 2e-06
Identities = 19/177 (10%), Positives = 45/177 (25%), Gaps = 5/177 (2%)
Query: 184 HMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHR 243
+ + + + A + + + K S
Sbjct: 123 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182
Query: 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASA 303
+V + + + S H + ++ S +N +A+
Sbjct: 183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG 242
Query: 304 SNDCIIRVWRLPDG--LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358
S D + VW + PI + H + ++S+ D + W+
Sbjct: 243 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET---TIVSAGQDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.1 bits (99), Expect = 2e-04
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 572 GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIY 621
GS+ GH ++ L + SA +G WDI GI R++
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTLF-SADAEGHINSWDISTGISNRVF 50
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.0 bits (91), Expect = 0.002
Identities = 33/238 (13%), Positives = 62/238 (26%), Gaps = 19/238 (7%)
Query: 184 HMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHR 243
H++ V A S A +
Sbjct: 77 HLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPIS 136
Query: 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASC-RGHEGDITDLAVSSNNALVAS 302
C ++V G D V ++ + A H +IT +A S+N A + +
Sbjct: 137 YNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVA 196
Query: 303 ASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 362
+ + + + ++ T +A +L + S D + +W+
Sbjct: 197 TDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP 256
Query: 363 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
P I G + N T V+ D+ + WN
Sbjct: 257 SDHPIIIK------------------GAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 73.2 bits (178), Expect = 5e-14
Identities = 28/364 (7%), Positives = 75/364 (20%), Gaps = 42/364 (11%)
Query: 251 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD-ITDLAVSSNNA-LVASASNDCI 308
Y+I + + + + + SC + ++ +N ++
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 309 IRVWRLPDGLPISVLR------GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 362
I L ++ + A SP VY ++ +
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVY---ATVNPTQRLNDHYVVK 120
Query: 363 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNAC 422
++ P Q++ +G+++V G V
Sbjct: 121 PPRLEVFSTADGLEAKPVRT------FPMPRQVYLMRAADDGSLYVAGPDIYKMDVKT-- 172
Query: 423 KPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHD 482
L N + + + +
Sbjct: 173 ----------GKYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQ 221
Query: 483 NIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQ------------PPRG 530
+ T + ++ ++H + + P P +
Sbjct: 222 DPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQ 281
Query: 531 GPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDV 590
+ + + + + V+N V ++
Sbjct: 282 RKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTTP 341
Query: 591 HPFN 594
F
Sbjct: 342 QVFI 345
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 65.5 bits (158), Expect = 2e-11
Identities = 26/344 (7%), Positives = 73/344 (21%), Gaps = 33/344 (9%)
Query: 291 LAVSSNNALVASASNDCIIRVWRLPDGLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSS 349
A+ + + + + + V + +P + Y + ++
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAY--VLNN 59
Query: 350 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT 409
G D + + + SS G ++ A + +G
Sbjct: 60 HYGDIYGIDLDTCKNT--------------FHANLSSVPGEVGRSMYSFAISPDGKEVYA 105
Query: 410 GSSDTLARVWNACKPNTDDS---DQPNHEIDVLSGHE--NDVNYVQFSGCAVASRFSLAD 464
+ T + E + V ++ +
Sbjct: 106 TVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDI 165
Query: 465 SSKEDSTPKFKNSWFCHDNI--VTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPP 522
+ T K+ + + + D R + K P
Sbjct: 166 YKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT 225
Query: 523 MPPQ-------PPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLV 575
G + + + R+ ++ L+
Sbjct: 226 ADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLI 285
Query: 576 HSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIR 619
+ + Y + ++ G V++ ++
Sbjct: 286 KAA-NLDHTYYCVAFDKKGDKLY-LGGTFNDLAVFNPDTLEKVK 327
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 44.7 bits (104), Expect = 6e-05
Identities = 33/311 (10%), Positives = 63/311 (20%), Gaps = 61/311 (19%)
Query: 160 GRGSFSLLSYDRDKGQNEIDHPPA-----HMRWPHMYADQVRGLGLREIGGGFTRHHRAP 214
+ D D +N + R + +A G + R +
Sbjct: 58 NNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHY 117
Query: 215 SIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSME- 273
++ + + R VY G + G D + + + +
Sbjct: 118 VVKPPRLEVFSTADG--LEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKY 175
Query: 274 ---------------TAYCLASCRGHEGDITDL------AVSSNNALVASASNDCIIRVW 312
L + A+A
Sbjct: 176 TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV 235
Query: 313 RLPDGLPISVLRG-HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIP 371
L G + T SP+ +D + +
Sbjct: 236 DLKTGKTHTQEFADLTELYFTGLRSPK----DPNQIYGVLNRLAKYDLKQRKLIKAA--- 288
Query: 372 RPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQ 431
H +C AF+ G G + V+N D+ +
Sbjct: 289 ------------------NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNP------DTLE 324
Query: 432 PNHEIDVLSGH 442
I + G
Sbjct: 325 KVKNIKLPGGD 335
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.2 bits (175), Expect = 6e-14
Identities = 61/381 (16%), Positives = 114/381 (29%), Gaps = 90/381 (23%)
Query: 231 QKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITD 290
+Q I VYC +D + +++G D +KIW T C GH G +
Sbjct: 3 HSLQRIHCRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL- 59
Query: 291 LAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD 350
+ + ++ + S+D +RVW + G ++ L H AV + F+
Sbjct: 60 -CLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCS-----K 113
Query: 351 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG 410
D + +WD + H+ + + V+
Sbjct: 114 DRSIAVWDMASPTDITLRRVLVG-------------------HRAAVNVVDFDDKYIVSA 154
Query: 411 SSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDS 470
S D +VWN + L+GH+ + +Q+
Sbjct: 155 SGDRTIKVWNT---------STCEFVRTLNGHKRGIACLQYRDR---------------- 189
Query: 471 TPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRG 530
+V+ S D + +W L+V
Sbjct: 190 ------------LVVSGSSDNTIRLWDIECGA------------CLRVLEGHEELVRCIR 225
Query: 531 GPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDV 590
+RI+ + VW L + A + +L H+ + L
Sbjct: 226 FDNKRIVSGAYDGKIKVWDLVA----------ALDPRAPAGTLCLRTLVEHSGRVFRLQ- 274
Query: 591 HPFNPRIAMSAGYDGKTIVWD 611
F+ +S+ +D ++WD
Sbjct: 275 --FDEFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.9 bits (138), Expect = 3e-09
Identities = 41/276 (14%), Positives = 83/276 (30%), Gaps = 32/276 (11%)
Query: 392 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQF 451
S ++C ++ V+G D ++W+ +L+GH V +Q+
Sbjct: 15 SKGVYCLQYD--DQKIVSGLRDNTIKIWDK---------NTLECKRILTGHTGSVLCLQY 63
Query: 452 SGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 511
+ + S DS+ + + + A W
Sbjct: 64 DERVIITGSS--DSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 121
Query: 512 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD 571
A + + + V D++++++A D I VWN +
Sbjct: 122 MASPTDITLRRVLVGHRA--------------AVNVVDFDDKYIVSASGDRTIKVWNTST 167
Query: 572 GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDG 631
V +L GH + R+ +S D +WDI G +R+ E +
Sbjct: 168 CEFVRTLNGHKRGIAC---LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVR 222
Query: 632 KFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQ 667
D I+ G++ + + +
Sbjct: 223 CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTL 258
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.2 bits (136), Expect = 6e-09
Identities = 47/306 (15%), Positives = 83/306 (27%), Gaps = 94/306 (30%)
Query: 230 VQKMQNIKRVRGHRNAVYCAIFDRS----------------------------------- 254
++ + + GH +V C +D
Sbjct: 42 KNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL 101
Query: 255 ---GRYVITGSDDRLVKIWSMETAYCL-ASCRGHEGDITDLAVSSNNALVASASNDCIIR 310
++T S DR + +W M + + V ++ + SAS D I+
Sbjct: 102 RFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIK 161
Query: 311 VWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYI 370
VW + L GH + + + R ++S S D T R+WD
Sbjct: 162 VWNTSTCEFVRTLNGHKRGIACLQYRDR-----LVVSGSSDNTIRLWDIECGAC------ 210
Query: 371 PRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD 430
+ H+ + V+G+ D +VW+ +
Sbjct: 211 ----------------LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAP 254
Query: 431 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRD 490
+ L H V +QF IV+ S D
Sbjct: 255 AGTLCLRTLVEHSGRVFRLQFDE----------------------------FQIVSSSHD 286
Query: 491 GSAIIW 496
+ +IW
Sbjct: 287 DTILIW 292
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 67.5 bits (163), Expect = 3e-12
Identities = 24/332 (7%), Positives = 67/332 (20%), Gaps = 23/332 (6%)
Query: 256 RYVITGSDDRLVKIWSMETAYCLASCRGHE--GDITDLAVSSNNA-LVASASNDCIIRVW 312
Y++ + + + E + V+ A+ + +
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 313 RLPDGLPISVLRGHTA-----AVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPR 367
L G + + T ++ A SP ++ S
Sbjct: 62 DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121
Query: 368 IYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTD 427
A + +++ + + G+ + +
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181
Query: 428 DSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC 487
D S + D + + + +
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTA--------RKDIDPADPTAYRTGLLTMDLETGEMAM 233
Query: 488 SRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 547
++ + + K + L+ + +P P +
Sbjct: 234 REVRIMDVFYFSTAVNPAKTRAFGAYNVLES-------FDLEKNASIKRVPLPHSYYSVN 286
Query: 548 WSLDNRFVLAAIMDCRICVWNAADGSLVHSLT 579
S D V + ++A +
Sbjct: 287 VSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 57.9 bits (138), Expect = 4e-09
Identities = 31/320 (9%), Positives = 74/320 (23%), Gaps = 20/320 (6%)
Query: 299 LVASASNDCIIRVWRLPDGLPISVLRGHTA--AVTAIAFSPRPGSVYQLLSSSDDGTCRI 356
+ + + + V V+ A +P Y + + +
Sbjct: 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAY--ATVNKSESLVK 60
Query: 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLA 416
D + RI + P + V A S P + + T
Sbjct: 61 IDLVTGETLGRIDLSTPEERVKSLFGAALS---PDGKTLAIYESPVRLELTHFEVQPTRV 117
Query: 417 RVWNACKPNTDDSDQPNHEIDVLSGHEND----VNYVQFSGCAVASRFSLADSSKEDSTP 472
+++A + + + +I +L+ + + + D +
Sbjct: 118 ALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEA 177
Query: 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGP 532
+ G +R+ A L G
Sbjct: 178 ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET-------GE 230
Query: 533 RQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHP 592
V +++ A + ++ + + + S Y ++V
Sbjct: 231 MAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVST 289
Query: 593 FNPRIAMSAGYDGKTIVWDI 612
+ G G +D
Sbjct: 290 DGSTVW-LGGALGDLAAYDA 308
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 53.7 bits (127), Expect = 1e-07
Identities = 34/330 (10%), Positives = 74/330 (22%), Gaps = 37/330 (11%)
Query: 345 LLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG 404
+L+ + + D AV + P G
Sbjct: 4 ILAPARPDKLVVIDTE-------------KMAVDKVITIADAGPTPMV-----PMVAPGG 45
Query: 405 -TVFVTGSSDTLARVWNA--------CKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCA 455
+ T + + +T + + LS + +
Sbjct: 46 RIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRL 105
Query: 456 VASRFSLADSSK-----EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510
+ F + + E + + ++ +RDGS + + R A
Sbjct: 106 ELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGT 165
Query: 511 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMI--VWSLDNRFVLAAIMDCRICVWN 568
P + + D + +
Sbjct: 166 LVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD 225
Query: 569 AADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRL 628
G + + Y NP + G +D+ + I+ +
Sbjct: 226 LETGEMAMREVRIMDVFYF--STAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPH-SY 282
Query: 629 VDGKFSPDGASIILSDDVGQLYILNTGQGE 658
S DG+++ L +G L + E
Sbjct: 283 YSVNVSTDGSTVWLGGALGDLAAYDAETLE 312
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 47.1 bits (110), Expect = 1e-05
Identities = 11/163 (6%), Positives = 35/163 (21%), Gaps = 5/163 (3%)
Query: 179 DHPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKR 238
P + A + + F + TM + +
Sbjct: 174 SWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM 233
Query: 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA 298
V+ + +++ + +E + + VS++ +
Sbjct: 234 REVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGS 292
Query: 299 LVASASNDCIIRVWRLPDGLPISVLR----GHTAAVTAIAFSP 337
V + + + + + F+
Sbjct: 293 TVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRLFTR 335
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 61.9 bits (149), Expect = 4e-10
Identities = 55/421 (13%), Positives = 109/421 (25%), Gaps = 70/421 (16%)
Query: 252 DRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRV 311
D + +T D + + ++ + + +S++ + D I +
Sbjct: 29 DLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDM 87
Query: 312 WRLPDGLPISVLR-----GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSP 366
L P V + ++ + I D P
Sbjct: 88 IDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTI--AGAYWPPQFAIMDG--ETLEP 143
Query: 367 RIYIPRPSDAVAGRNMAPSSS----AGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNAC 422
+ + V + P H F G V + D +
Sbjct: 144 KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD-----IDNL 198
Query: 423 KPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW---- 478
+ + + S H + S S K +
Sbjct: 199 TVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGAN 258
Query: 479 FCHDN----IVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQ 534
F H T +I I ++HP+ A W + L+ GG
Sbjct: 259 FVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYA-WKKVAELQGQ----------GGGSL 307
Query: 535 RILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLD----- 589
I P+ ++ V D F A + + V++ + + + E + +
Sbjct: 308 FIKTHPKSSHLYV---DTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRV 364
Query: 590 VHP-FNPRIAMSAGYDGKTIVWDIWEGIP----IRIY---------EISRFRLV--DGKF 633
V P +N G + + +W G + + + RL+ GKF
Sbjct: 365 VQPEYNK--------RGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPRLITPTGKF 416
Query: 634 S 634
+
Sbjct: 417 N 417
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 60.7 bits (146), Expect = 7e-10
Identities = 44/370 (11%), Positives = 92/370 (24%), Gaps = 33/370 (8%)
Query: 291 LAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD 350
+ N + + I + + V+ AV S +
Sbjct: 26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLL---VIGR 81
Query: 351 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG 410
D + D + + I +A R++ S G + A+ + G
Sbjct: 82 DARIDMIDLWAKEPTKVAEIKIGIEA---RSVESSKFKGYEDRYTIAGAYWPPQFAIMDG 138
Query: 411 SSDTLARVWNACKPNTDDSDQP--NHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 468
+ ++ + D +++ HE+ V + D
Sbjct: 139 ETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL 198
Query: 469 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPP 528
T + F D + + + K A + P
Sbjct: 199 TVT-SIGAAPFLAD--GGWDSSHRYFMT---AANNSNKVAVIDSKDRRLSALVDVGKTPH 252
Query: 529 RGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVL 588
G + P V D L + V L G + +
Sbjct: 253 PGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY---AWKKVAELQGQGGGSLFI 309
Query: 589 DVHPFNPRIAMSA-----GYDGKTI-VWDIWEGIPIR----IYEISRF-----RLVDGKF 633
HP + + + +++ V+D+ I E + R+V ++
Sbjct: 310 KTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEY 369
Query: 634 SPDGASIILS 643
+ G + S
Sbjct: 370 NKRGDEVWFS 379
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 59.8 bits (143), Expect = 1e-09
Identities = 36/331 (10%), Positives = 73/331 (22%), Gaps = 27/331 (8%)
Query: 301 ASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVY-------QLLSSSDDGT 353
A + V G I ++ G + + + ++
Sbjct: 22 AHFAAVTQQFVIDGEAGRVIGMIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERTDY 79
Query: 354 CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD 413
++D + I +P P G + +
Sbjct: 80 VEVFDPVTLLPTADIELPDA----------PRFLVGTYPWMTSLTPDGKTLLFYQFSPAP 129
Query: 414 TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS--GCAVASRFSLADSSKEDST 471
+ V K D P+ + G F + + T
Sbjct: 130 AVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT 186
Query: 472 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRG- 530
F N S+ ++W + + H A L + G
Sbjct: 187 EVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGW 246
Query: 531 --GPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVL 588
G Q++ + + + V +A G + E +
Sbjct: 247 RPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSIN 306
Query: 589 DVHPFNPRIAMSAGYDGKTIVWDIWEGIPIR 619
P + + D + D G +R
Sbjct: 307 VSQDEKPLLYALSTGDKTLYIHDAESGEELR 337
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 45.9 bits (107), Expect = 3e-05
Identities = 14/206 (6%), Positives = 42/206 (20%), Gaps = 31/206 (15%)
Query: 184 HMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVR--- 240
+ + + ++ + AP + + + +
Sbjct: 128 APAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE 187
Query: 241 ----GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET--AYCLASCRGHEGDITDLA-- 292
+ + + ++ + + + + A L +
Sbjct: 188 VFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR 247
Query: 293 ------------------VSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIA 334
+ + + V G ++ + +I
Sbjct: 248 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSIN 306
Query: 335 FSPRPGSVYQLLSSSDDGTCRIWDAR 360
S S+ D T I DA
Sbjct: 307 VSQD-EKPLLYALSTGDKTLYIHDAE 331
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 57.6 bits (137), Expect = 6e-09
Identities = 38/343 (11%), Positives = 80/343 (23%), Gaps = 35/343 (10%)
Query: 241 GHRNAVYCAIFDRSGRYVITGSDD--RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA 298
+ + + I+ T + G++ + V N
Sbjct: 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG-KAEKFEENLGNVFAMGVDRNGK 98
Query: 299 LVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358
A++ I L G P + R A +T S + T
Sbjct: 99 FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVM 158
Query: 359 ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARV 418
+ + ++ + AF+A+ S +L
Sbjct: 159 QAIHVYDMEGRKIFAAT--------------TENSHDYAPAFDADSKNLYYLSYRSLDPS 204
Query: 419 WNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478
+ + S + + V+ N + S S A + K +
Sbjct: 205 PDRV--VLNFSFEVVSKPFVIPLIPGSPNPTKLVP---RSMTSEAGEYDLNDMYKRSSPI 259
Query: 479 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQA---YHLKVPPPPMPPQPPRGGPRQR 535
+ I I AA + A L ++
Sbjct: 260 NVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK----------TRK 309
Query: 536 ILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL 578
+ + + S D + V+ D +I + ++
Sbjct: 310 VTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV 352
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 56.4 bits (134), Expect = 2e-08
Identities = 39/395 (9%), Positives = 87/395 (22%), Gaps = 59/395 (14%)
Query: 295 SNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354
+ L+A S + + + V + + + + + +
Sbjct: 13 LDGDLIAFVSRG-QAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAF-IHGTREGDFL 68
Query: 355 RIWDA------RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFV 408
I+D ++ + ++ +A +
Sbjct: 69 GIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA 128
Query: 409 TGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 468
+ T++ + + H D+ + + E
Sbjct: 129 MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA-----------TTE 177
Query: 469 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPP 528
+S N+ S + L
Sbjct: 178 NSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPL------------ 225
Query: 529 RGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC----RICVWNAADGSLVHSLTGHTES 584
P N + A D + D + S
Sbjct: 226 ----------IPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESS 275
Query: 585 TYVLDVHPFNPRIAM--SAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIIL 642
+ V A A G + +D+ + L D + S D ++++
Sbjct: 276 ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKN----NLTDLRLSADRKTVMV 331
Query: 643 SDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLV 677
D G++Y + E ++ D RPLV
Sbjct: 332 RKDDGKIYTFPLEKPED------ERTVETDKRPLV 360
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 54.5 bits (129), Expect = 5e-08
Identities = 15/256 (5%), Positives = 39/256 (15%), Gaps = 41/256 (16%)
Query: 180 HPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRV 239
+ + + Y + + + I
Sbjct: 115 ETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA 174
Query: 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYC-------LASCRGHEGDITDLA 292
+ Y FD + + S L G
Sbjct: 175 TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK 234
Query: 293 VSSNNALVASAS-------NDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQL 345
+ + + D I L +
Sbjct: 235 LVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEF---AAYY 291
Query: 346 LSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT 405
+ + G +D + + + + +A+
Sbjct: 292 QGAPEKGVLLKYDVK------------------------TRKVTEVKNNLTDLRLSADRK 327
Query: 406 VFVTGSSDTLARVWNA 421
+ D +
Sbjct: 328 TVMVRKDDGKIYTFPL 343
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 56.3 bits (135), Expect = 2e-08
Identities = 51/419 (12%), Positives = 102/419 (24%), Gaps = 57/419 (13%)
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV 300
R +D + +T D + + T + +S++ +
Sbjct: 18 EDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYL 76
Query: 301 ASASNDCIIRVWRLPDG-----LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355
D + + L I + + T+ +
Sbjct: 77 FVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAI--AGAYWPPQYV 134
Query: 356 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTL 415
I D + P + R M ++ + F+ +T
Sbjct: 135 IMDGETLE---------PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET- 184
Query: 416 ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475
++ + D + +D G + R+ + ++ K
Sbjct: 185 GKILLV---DYTDLNNLKTTEISAERFLHDG------GLDGSHRYFITAANAR---NKLV 232
Query: 476 NSWFCHDNIVTCSRDGSAIIWIPRSRR-SHPKAARWTQAYHL---KVPPPPMPPQ--PPR 529
+V G R HP H+ V P+ P
Sbjct: 233 VIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDN 292
Query: 530 GGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLD 589
P G ++ + + N + + + S
Sbjct: 293 AWKILDSFPALGGGSLFIKTHPNS------QYLYVDATLNPEAEISGS------------ 334
Query: 590 VHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQ 648
V F+ + G D + I E I E R+V G+F+ DG + S G+
Sbjct: 335 VAVFDIKAMTGDGSDPEFKTLPIAEW--AGITEGQP-RVVQGEFNKDGTEVWFSVWNGK 390
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 42.5 bits (99), Expect = 4e-04
Identities = 15/131 (11%), Positives = 39/131 (29%), Gaps = 7/131 (5%)
Query: 535 RILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSL-----VHSLTGHTESTYVLD 589
+L T V++ S R++ D ++ + + + +
Sbjct: 56 TVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKM 115
Query: 590 VHPFNPRIAMSAGYDGKTIVWD--IWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVG 647
+ A + + ++ D E I+ + + P A+I+ S
Sbjct: 116 EGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP 175
Query: 648 QLYILNTGQGE 658
+ + G+
Sbjct: 176 EFIVNVKETGK 186
|
| >d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} Length = 118 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: P300/CAF histone acetyltransferase bromodomain species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.8 bits (108), Expect = 3e-06
Identities = 17/113 (15%), Positives = 40/113 (35%), Gaps = 4/113 (3%)
Query: 1636 EQPRIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQS 1695
++PR + ++L S + Q Q + + + ++ + P+ L +
Sbjct: 6 KEPR----DPDQLYSTLKSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKTMSE 61
Query: 1696 RLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSLK 1748
RL+N YY + D+ + +N + Y ++ L +
Sbjct: 62 RLKNRYYVSKKLFMADLQRVFTNCKEYNPPESEYYKCANILEKFFFSKIKEAG 114
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 49.1 bits (115), Expect = 3e-06
Identities = 35/326 (10%), Positives = 70/326 (21%), Gaps = 27/326 (8%)
Query: 259 ITGSDDRLVKIWSMETAYCLASCR--GHEGDITDLAVSSN-NALVASASNDCIIRVWRLP 315
I + + + +W++ L + G + + VS + L + + +R+
Sbjct: 8 IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67
Query: 316 DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSD 375
A+T A S PGS+ + + + S
Sbjct: 68 PD---------DGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV 118
Query: 376 AVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHE 435
V H N + D
Sbjct: 119 GVVDVVE-----GLDGCHSANISPDNR-----TLWVPALKQDRICLFTVSDDGHLVAQDP 168
Query: 436 IDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAII 495
+V + ++ F + +S D +
Sbjct: 169 AEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSD 228
Query: 496 WIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI--LPTPRGVNMIVWSLDNR 553
+ R A + G + PT +
Sbjct: 229 TRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGK 288
Query: 554 FVLAAIMDC-RICVW--NAADGSLVH 576
+++AA I V+ G L
Sbjct: 289 YLIAAGQKSHHISVYEIVGEQGLLHE 314
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 46.0 bits (107), Expect = 2e-05
Identities = 33/323 (10%), Positives = 67/323 (20%), Gaps = 49/323 (15%)
Query: 259 ITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL 318
I S+ + + + + A+
Sbjct: 6 IANSESDNISVIDVTSNKVTATIPVGSN-------------------------------- 33
Query: 319 PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVA 378
SP VY ++++ I D + + VA
Sbjct: 34 -----------PMGAVISPDGTKVY--VANAHSNDVSIIDTATNNVIATVPAGSSPQGVA 80
Query: 379 GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDV 438
+ + TV T + N + V
Sbjct: 81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTV 140
Query: 439 LSGHENDVNYVQFSGC--AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW 496
+ + + D +K S D + D +
Sbjct: 141 SVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA 200
Query: 497 IPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVL 556
P +P+ + K RI P I + D + V
Sbjct: 201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI-PVGPDPAGIAVTPDGKKVY 259
Query: 557 AAI-MDCRICVWNAADGSLVHSL 578
A+ + V + A ++ ++
Sbjct: 260 VALSFCNTVSVIDTATNTITATM 282
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 44.9 bits (104), Expect = 5e-05
Identities = 25/295 (8%), Positives = 70/295 (23%), Gaps = 45/295 (15%)
Query: 341 SVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 400
S + +++S+ + D ++ + I G
Sbjct: 1 STFAYIANSESDNISVIDVTSNKVTATI------------------PVGSNPMGA---VI 39
Query: 401 NANGT-VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASR 459
+ +GT V+V + + + N + ++ + + +
Sbjct: 40 SPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLS 99
Query: 460 FSLADSSKEDSTPKFKNS-----------------WFCHDNIVTCSRDGSAIIWI----- 497
S+ T K S V + + I +
Sbjct: 100 VIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRS 159
Query: 498 PRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA 557
P+ P + A + + ++ P G+ +
Sbjct: 160 PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNV 219
Query: 558 AIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612
+ + + + + + + V P ++ ++ + V D
Sbjct: 220 DKYFNTVSMIDTGTNKITARIPVGPDPAGI-AVTPDGKKVYVALSFCNTVSVIDT 273
|
| >d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: GCN5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.3 bits (99), Expect = 4e-05
Identities = 13/94 (13%), Positives = 33/94 (35%)
Query: 1646 NKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGL 1705
++L + L + + + S+ ++ P+ L + RL + YY
Sbjct: 1 DQLYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTR 60
Query: 1706 EAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDL 1739
+ D+ +++N Y +++ L
Sbjct: 61 KLFVADLQRVIANCREYNPPDSEYCRCASALEKF 94
|
| >d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 139 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: TAFII250 double bromodomain module species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (94), Expect = 4e-04
Identities = 11/70 (15%), Positives = 28/70 (40%)
Query: 1679 NFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSD 1738
++ P+ L ++ + Y E + + +++ N+ +Y G L+ + + D
Sbjct: 58 DYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLD 117
Query: 1739 LVTRTLSSLK 1748
L L +
Sbjct: 118 LCDEKLKEKE 127
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 41.9 bits (97), Expect = 6e-04
Identities = 30/369 (8%), Positives = 68/369 (18%), Gaps = 66/369 (17%)
Query: 325 GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 384
+ + L + GT W + ++
Sbjct: 17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAG--CGVTLGHSLGAFLSLAVAGH 74
Query: 385 SSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDS-DQPNHEIDVLSGHE 443
S S + + G V++ + P+ +
Sbjct: 75 SGS--------DFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRV 126
Query: 444 NDVNYVQFSGCAVASRFSLADSSKED-STPKFKNSWFCHD----------NIVTCSRDGS 492
+ + S C + F + ++ S S
Sbjct: 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPAS 186
Query: 493 AIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN 552
+ + +
Sbjct: 187 LAASDLAAAPAAAGIVGAQCTGAQNCSSQAA-----------------------QANYPG 223
Query: 553 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612
V A AA ++ ++ G+ + ++ ++ + I+
Sbjct: 224 MLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQM-VAKLKNTDGIMILT 282
Query: 613 WEGIPIRIYEISRFRLVDGK------------------FSPDGASIIL--SDDVGQLYIL 652
E + V + DGAS S L I
Sbjct: 283 VEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIY 342
Query: 653 NTGQGESQK 661
+ + Q
Sbjct: 343 DAASDQDQS 351
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1757 | |||
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 100.0 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.98 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.97 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.97 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.97 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.96 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.95 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.95 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.94 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.94 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.91 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.9 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.89 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.89 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.87 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.86 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.86 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.81 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.79 | |
| d1eqfa2 | 128 | TAFII250 double bromodomain module {Human (Homo sa | 99.78 | |
| d1wuma1 | 118 | P300/CAF histone acetyltransferase bromodomain {Hu | 99.78 | |
| d3d7ca1 | 102 | GCN5 {Human (Homo sapiens) [TaxId: 9606]} | 99.78 | |
| d1e6ia_ | 111 | GCN5 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.77 | |
| d1eqfa1 | 139 | TAFII250 double bromodomain module {Human (Homo sa | 99.77 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.76 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.75 | |
| d3dwya1 | 114 | CREB-binding protein, CBP {Human (Homo sapiens) [T | 99.74 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.67 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.63 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.43 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.35 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.32 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.28 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.27 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.25 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.22 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.15 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.13 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.1 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.02 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.0 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.95 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.89 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.79 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.79 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 98.55 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 98.55 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.49 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.44 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 98.42 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 98.34 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.14 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.7 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.69 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.31 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.16 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.15 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.14 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.04 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.68 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.41 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 96.32 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 94.57 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 93.81 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 93.1 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 92.71 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 92.55 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 91.92 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 90.02 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 86.72 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 86.59 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 83.11 | |
| d1mhna_ | 59 | Survival motor neuron protein 1, smn {Human (Homo | 82.32 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.4e-43 Score=309.44 Aligned_cols=310 Identities=19% Similarity=0.318 Sum_probs=274.3
Q ss_pred EEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 26899816798789999979999999981872699992678708899806789859999957999999984896699997
Q 000268 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1757)
Q Consensus 234 k~i~tL~GH~~~V~sIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~gHs~~VtsIafSPDg~lLASgS~DGtIrIWD 313 (1757)
....+|+||.++|++++|+|++++||||+.||+|+|||+.+++++.++.+|...|.+++|++++.+++++..++.+.+|+
T Consensus 8 ~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (317)
T d1vyhc1 8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD 87 (317)
T ss_dssp SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred CCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 84489858888768999938989999993899299998999979999957888677776301111011111111101110
Q ss_pred CCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89997058841778855999952799950799999289919999467897655252379996324888888888999996
Q 000268 314 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 393 (1757)
Q Consensus 314 l~tg~~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~ 393 (1757)
.........+.+|...+.++.|++++. .+++++.|+.+++|++.++.....+. .+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~--------------------~~~~ 144 (317)
T d1vyhc1 88 FQGFECIRTMHGHDHNVSSVSIMPNGD---HIVSASRDKTIKMWEVQTGYCVKTFT--------------------GHRE 144 (317)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSSSS---EEEEEETTSEEEEEETTTCCEEEEEE--------------------CCSS
T ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCC---EEEEECCCCCEEEEECCCCEEEEEEC--------------------CCCC
T ss_conf 011111111000000000000169985---57765267523575114430346871--------------------6777
Q ss_pred CEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 43899987799889995089509996389999989999984023303778880079982676223333456887888875
Q 000268 394 QIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1757)
Q Consensus 394 ~V~sIafSpdG~~LasGs~DG~IrIWDi~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~ 473 (1757)
.+.+++|++++.+|++++.|+.|++|++.+ ......+.+|...+..+.|+++...
T Consensus 145 ~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~---------------- 199 (317)
T d1vyhc1 145 WVRMVRPNQDGTLIASCSNDQTVRVWVVAT---------KECKAELREHRHVVECISWAPESSY---------------- 199 (317)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTT---------CCEEEEECCCSSCEEEEEECCSCGG----------------
T ss_pred CCEEEECCCCCCEEEEEECCCEEEEEEECC---------CEEEEEEECCCCCCEEEEEEECCCC----------------
T ss_conf 630000166799999992798299975125---------4034788247787337998632564----------------
Q ss_pred CCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCC
Q ss_conf 54555578708998189909999278888885222211222356999999999999999311048999712999857997
Q 000268 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 553 (1757)
Q Consensus 474 ~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~ 553 (1757)
+.... ........+...+.
T Consensus 200 ----------~~~~~---------------------------------------------------~~~~~~~~~~~~~~ 218 (317)
T d1vyhc1 200 ----------SSISE---------------------------------------------------ATGSETKKSGKPGP 218 (317)
T ss_dssp ----------GGGGG---------------------------------------------------CCSCC-------CC
T ss_pred ----------CEEEC---------------------------------------------------CCCCEEEEECCCCC
T ss_conf ----------11103---------------------------------------------------45630343025886
Q ss_pred EEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEEEE
Q ss_conf 99999539839999889994589980799884999990399949999958992999968999228998606752579999
Q 000268 554 FVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKF 633 (1757)
Q Consensus 554 ~LvSGs~DG~I~IWDl~tgkli~tL~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDi~tg~~i~~l~~~~~~Itslaf 633 (1757)
++++++.|+.|++|++.+++++..+.+|...|.+++|+| ++.+|++++.||.|+|||+.+++++..+..|...|++++|
T Consensus 219 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~ 297 (317)
T d1vyhc1 219 FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF 297 (317)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEE
T ss_pred EEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECC-CCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEE
T ss_conf 147516997899988899968899968899879999879-9999999979894999999999199999289998899999
Q ss_pred CCCCCEEEEEECCCEEEEEE
Q ss_conf 47999999995797099999
Q 000268 634 SPDGASIILSDDVGQLYILN 653 (1757)
Q Consensus 634 SPDG~~LAsgs~DG~I~IWd 653 (1757)
+|++++|++++.||.|++|+
T Consensus 298 s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 298 HKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CSSSSCEEEEETTSEEEEEC
T ss_pred CCCCCEEEEEECCCEEEEEC
T ss_conf 49999999992899499829
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-41 Score=296.54 Aligned_cols=288 Identities=16% Similarity=0.255 Sum_probs=212.5
Q ss_pred CCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEE-----EEEEECCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 3226899816798789999979999999981872699992678708-----89980678985999995799999998489
Q 000268 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYC-----LASCRGHEGDITDLAVSSNNALVASASND 306 (1757)
Q Consensus 232 ~~k~i~tL~GH~~~V~sIaFSPDG~~LATGS~DGtIkIWDi~tg~~-----l~tL~gHs~~VtsIafSPDg~lLASgS~D 306 (1757)
..+.+++| +|...|+|++|+|+|++||+|+ ||.|+|||+.++.. .....+|.+.|.+++|+|++++|++++.|
T Consensus 41 ~~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~d 118 (337)
T d1gxra_ 41 HARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA 118 (337)
T ss_dssp EEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS
T ss_pred CCEEEEEC-CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECC
T ss_conf 75499987-9999289999989999999997-998899773677633116876404889968999986799889886123
Q ss_pred CEEEEEECCCC--CCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 66999978999--7058841778855999952799950799999289919999467897655252379996324888888
Q 000268 307 CIIRVWRLPDG--LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 384 (1757)
Q Consensus 307 GtIrIWDl~tg--~~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~ 384 (1757)
+.|++|++... .....+..|...+.+++|+|++. ++++++.|+.|.+|++.++.+.....
T Consensus 119 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~s~~~d~~i~~~~~~~~~~~~~~~--------------- 180 (337)
T d1gxra_ 119 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK---VCFSCCSDGNIAVWDLHNQTLVRQFQ--------------- 180 (337)
T ss_dssp SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS---EEEEEETTSCEEEEETTTTEEEEEEC---------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCC---------------
T ss_conf 321111111111111111111111111111111111---11111111111111111111111111---------------
Q ss_pred CCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 88899999643899987799889995089509996389999989999984023303778880079982676223333456
Q 000268 385 SSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLAD 464 (1757)
Q Consensus 385 ~~~~~~~~~~V~sIafSpdG~~LasGs~DG~IrIWDi~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~~s~~~~~~ 464 (1757)
.+...+.+++|++++..+++++.|+.+++|+++++ ..+.. ..+.
T Consensus 181 -----~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~---------~~~~~-~~~~--------------------- 224 (337)
T d1gxra_ 181 -----GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG---------RQLQQ-HDFT--------------------- 224 (337)
T ss_dssp -----CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---------EEEEE-EECS---------------------
T ss_pred -----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------EEECC-CCCC---------------------
T ss_conf -----11111110123444321122356655321111110---------00002-4666---------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEE
Q ss_conf 88788887554555578708998189909999278888885222211222356999999999999999311048999712
Q 000268 465 SSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVN 544 (1757)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~Vt 544 (1757)
..|.
T Consensus 225 ----------------------------------------------------------------------------~~i~ 228 (337)
T d1gxra_ 225 ----------------------------------------------------------------------------SQIF 228 (337)
T ss_dssp ----------------------------------------------------------------------------SCEE
T ss_pred ----------------------------------------------------------------------------CCEE
T ss_conf ----------------------------------------------------------------------------6157
Q ss_pred EEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEC
Q ss_conf 99985799799999539839999889994589980799884999990399949999958992999968999228998606
Q 000268 545 MIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS 624 (1757)
Q Consensus 545 sIafSPDG~~LvSGs~DG~I~IWDl~tgkli~tL~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDi~tg~~i~~l~~~ 624 (1757)
+++|+|++.+|++++.|+.+++|++..++.. ....|...|++++|+| ++.+|++++.||.|++||+.+++++..+. |
T Consensus 229 ~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~-~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~ 305 (337)
T d1gxra_ 229 SLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSK-E 305 (337)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEE-C
T ss_pred EEEECCCCCCCCEECCCCCCCCCCCCCCCCC-CCCCCCCCCCEEEECC-CCCEEEEEECCCEEEEEECCCCCEEEECC-C
T ss_conf 9997153030000002564211111111100-0012456541699989-99999999489969999899997999926-9
Q ss_pred CCCEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 752579999479999999957970999998
Q 000268 625 RFRLVDGKFSPDGASIILSDDVGQLYILNT 654 (1757)
Q Consensus 625 ~~~ItslafSPDG~~LAsgs~DG~I~IWdl 654 (1757)
...|.+++|+|++++|++++.||.|+||++
T Consensus 306 ~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 306 SSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCCEEEEEEECCCCEEEEEECCCEEEEEEE
T ss_conf 998799999279999999908996999977
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.2e-42 Score=301.13 Aligned_cols=305 Identities=22% Similarity=0.408 Sum_probs=214.2
Q ss_pred EEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEE------------------CCCCCEEEEEECCCCC
Q ss_conf 9981679878999997999999998187269999267870889980------------------6789859999957999
Q 000268 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR------------------GHEGDITDLAVSSNNA 298 (1757)
Q Consensus 237 ~tL~GH~~~V~sIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~------------------gHs~~VtsIafSPDg~ 298 (1757)
....+|.+.|+||+|+|+|++||+|+ |+.|+||++.+++.+..+. +|...|++++|+|+++
T Consensus 56 ~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ 134 (388)
T d1erja_ 56 HKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK 134 (388)
T ss_dssp EEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred EEECCCCCCEEEEEECCCCCEEEEEE-CCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
T ss_conf 76079999689999999999999994-99489998136405766316654432443211101467789889999889998
Q ss_pred EEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCC
Q ss_conf 99998489669999789997058841778855999952799950799999289919999467897655252379996324
Q 000268 299 LVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVA 378 (1757)
Q Consensus 299 lLASgS~DGtIrIWDl~tg~~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~ 378 (1757)
+|++|+.||.|++|+...++.+..+.+|...|.++.|++++. .+++++.++.+++||..+........
T Consensus 135 ~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---~~~~~~~~~~i~~~d~~~~~~~~~~~--------- 202 (388)
T d1erja_ 135 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD---KLVSGSGDRTVRIWDLRTGQCSLTLS--------- 202 (388)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS---EEEEEETTSEEEEEETTTTEEEEEEE---------
T ss_pred CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCEEEEEEECCCCCCCCCCC---------
T ss_conf 012134441111211111111111111111111101111111---11122210156541011111100001---------
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEC-CCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCC
Q ss_conf 88888888899999643899987-79988999508950999638999998999998402330377888007998267622
Q 000268 379 GRNMAPSSSAGPQSHQIFCCAFN-ANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVA 457 (1757)
Q Consensus 379 g~~~~~~~~~~~~~~~V~sIafS-pdG~~LasGs~DG~IrIWDi~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~~ 457 (1757)
+.....++.+. +++.+|++++.|+.|++|+..++...... ........+|...|.++.|++++
T Consensus 203 ------------~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~--~~~~~~~~~h~~~v~~l~~s~~~-- 266 (388)
T d1erja_ 203 ------------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL--DSENESGTGHKDSVYSVVFTRDG-- 266 (388)
T ss_dssp ------------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEE--C------CCCSSCEEEEEECTTS--
T ss_pred ------------CCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCEEE--CCCCCCCCCCCCCEEEEEECCCC--
T ss_conf ------------24544211236887875899738981999634557300010--24433345778987899997999--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 33334568878888755455557870899818990999927888888522221122235699999999999999931104
Q 000268 458 SRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL 537 (1757)
Q Consensus 458 s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~ 537 (1757)
..|++++.||.|++|++.+........ ............
T Consensus 267 ------------------------~~l~s~~~d~~i~iwd~~~~~~~~~~~-----------------~~~~~~~~~~~~ 305 (388)
T d1erja_ 267 ------------------------QSVVSGSLDRSVKLWNLQNANNKSDSK-----------------TPNSGTCEVTYI 305 (388)
T ss_dssp ------------------------SEEEEEETTSEEEEEEC--------------------------------CEEEEEE
T ss_pred ------------------------CEEEEEECCCCEEEEECCCCCCCCCCC-----------------CCCCCCEEEECC
T ss_conf ------------------------999999789928987515776432101-----------------344420011012
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEE------CCCCCEEEEEECCCCEEEEE
Q ss_conf 899971299985799799999539839999889994589980799884999990------39994999995899299996
Q 000268 538 PTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVH------PFNPRIAMSAGYDGKTIVWD 611 (1757)
Q Consensus 538 ~h~~~VtsIafSPDG~~LvSGs~DG~I~IWDl~tgkli~tL~gH~~~VtsIafS------Pdd~~lLaSgs~DG~IrIWD 611 (1757)
.|...|.+++|+|++++|++|+.||.|++||+.+++++.++.+|.+.|.+++++ | ++.+|++|+.||.|+||+
T Consensus 306 ~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~sp-d~~~l~s~s~Dg~I~iW~ 384 (388)
T d1erja_ 306 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP-EYNVFATGSGDCKARIWK 384 (388)
T ss_dssp CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCT-TCEEEEEEETTSEEEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCC-CCCEEEEEECCCEEEEEE
T ss_conf 4553278999889999999996989799999999969999968899789999846742589-999999991899799976
Q ss_pred C
Q ss_conf 8
Q 000268 612 I 612 (1757)
Q Consensus 612 i 612 (1757)
+
T Consensus 385 ~ 385 (388)
T d1erja_ 385 Y 385 (388)
T ss_dssp E
T ss_pred E
T ss_conf 2
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.2e-40 Score=287.52 Aligned_cols=292 Identities=22% Similarity=0.363 Sum_probs=234.5
Q ss_pred CEEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 22689981679878999997999999998187269999267870889980678985999995799999998489669999
Q 000268 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1757)
Q Consensus 233 ~k~i~tL~GH~~~V~sIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~gHs~~VtsIafSPDg~lLASgS~DGtIrIW 312 (1757)
++..++|+||.+.|+|++|+|++.+||+|+.||+|+|||+.+++.+..+.+|...|.+++|+|++.++++++.|+.+.+|
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~ 124 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred EEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCEEECC
T ss_conf 06527988878988899998999999999789955563102102579972465337756760121144310133201013
Q ss_pred ECCCC----CCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 78999----70588417788559999527999507999992899199994678976552523799963248888888889
Q 000268 313 RLPDG----LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 388 (1757)
Q Consensus 313 Dl~tg----~~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~ 388 (1757)
+.... .....+.+|............. .++....+.....|............
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 181 (340)
T d1tbga_ 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDN----QIVTSSGDTTCALWDIETGQQTTTFT------------------- 181 (340)
T ss_dssp ESSSSCSCCCEEEEECCCSSCEEEEEEEETT----EEEEEETTTEEEEEETTTTEEEEEEE-------------------
T ss_pred CCCCCCCCCCCCEECCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCC-------------------
T ss_conf 3222212221110013542110111111111----11111244543200123221111123-------------------
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 99996438999877998899950895099963899999899999840233037788800799826762233334568878
Q 000268 389 GPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 468 (1757)
Q Consensus 389 ~~~~~~V~sIafSpdG~~LasGs~DG~IrIWDi~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~~ 468 (1757)
.....+....+.+.+.++++++.|+.|++||+.+ ...+..+.+|...|++++|+|++
T Consensus 182 -~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~---------~~~~~~~~~h~~~i~~v~~~p~~------------- 238 (340)
T d1tbga_ 182 -GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE---------GMCRQTFTGHESDINAICFFPNG------------- 238 (340)
T ss_dssp -CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT---------TEEEEEECCCSSCEEEEEECTTS-------------
T ss_pred -CCCEEEEEECCCCCCCEEEEEECCCEEEEEECCC---------CCEEEEEECCCCCEEEEEECCCC-------------
T ss_conf -3101576300124421268760573699999999---------94889995788985899997998-------------
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEE
Q ss_conf 88875545555787089981899099992788888852222112223569999999999999993110489997129998
Q 000268 469 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 548 (1757)
Q Consensus 469 ~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIaf 548 (1757)
..|++++.||.|++|++....... ......+...|++++|
T Consensus 239 -------------~~l~s~s~d~~i~~~~~~~~~~~~---------------------------~~~~~~~~~~i~~~~~ 278 (340)
T d1tbga_ 239 -------------NAFATGSDDATCRLFDLRADQELM---------------------------TYSHDNIICGITSVSF 278 (340)
T ss_dssp -------------SEEEEEETTSCEEEEETTTTEEEE---------------------------EECCTTCCSCEEEEEE
T ss_pred -------------CEEEEEECCCEEEEEEECCCCCCC---------------------------CCCCCCCCCCEEEEEE
T ss_conf -------------999999699969997521221111---------------------------1112244574589999
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 579979999953983999988999458998079988499999039994999995899299996
Q 000268 549 SLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1757)
Q Consensus 549 SPDG~~LvSGs~DG~I~IWDl~tgkli~tL~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWD 611 (1757)
+|++++|++|+.||.|++||+.+++++.++.+|.+.|++++|+| ++.+|++|+.||.|+|||
T Consensus 279 s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~-d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEEC-CCCEEEEECCCCEEEEEC
T ss_conf 89999999997979899999999939899848999789999908-999999990699799859
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.1e-40 Score=286.45 Aligned_cols=288 Identities=14% Similarity=0.159 Sum_probs=202.1
Q ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCC-----EEEECCCCCCEEEEEECCCCCCEEEEEEEEC
Q ss_conf 08899806789859999957999999984896699997899970-----5884177885599995279995079999928
Q 000268 276 YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLP-----ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD 350 (1757)
Q Consensus 276 ~~l~tL~gHs~~VtsIafSPDg~lLASgS~DGtIrIWDl~tg~~-----i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~ 350 (1757)
+.+.++ .|...|++++|+|++++||+|+ ||.|+|||+.++.. .....+|.+.|.+++|+|++. +|++++.
T Consensus 43 ~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~---~l~s~~~ 117 (337)
T d1gxra_ 43 RQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC---TLIVGGE 117 (337)
T ss_dssp EEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS---EEEEEES
T ss_pred EEEEEC-CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCC---EEEEEEC
T ss_conf 499987-9999289999989999999997-9988997736776331168764048899689999867998---8988612
Q ss_pred CCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCC
Q ss_conf 99199994678976552523799963248888888889999964389998779988999508950999638999998999
Q 000268 351 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD 430 (1757)
Q Consensus 351 DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sIafSpdG~~LasGs~DG~IrIWDi~t~~~~~s~ 430 (1757)
||.|++||+.......... ...+...+.+++|+|++.++++++.++.|++|++
T Consensus 118 dg~i~iwd~~~~~~~~~~~------------------~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~--------- 170 (337)
T d1gxra_ 118 ASTLSIWDLAAPTPRIKAE------------------LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL--------- 170 (337)
T ss_dssp SSEEEEEECCCC--EEEEE------------------EECSSSCEEEEEECTTSSEEEEEETTSCEEEEET---------
T ss_pred CCCCCCCCCCCCCCCCCCC------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------
T ss_conf 3321111111111111111------------------1111111111111111111111111111111111---------
Q ss_pred CCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 99840233037788800799826762233334568878888755455557870899818990999927888888522221
Q 000268 431 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510 (1757)
Q Consensus 431 ~~~~~i~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w 510 (1757)
.+.+
T Consensus 171 --------------------------------------------------------------------~~~~-------- 174 (337)
T d1gxra_ 171 --------------------------------------------------------------------HNQT-------- 174 (337)
T ss_dssp --------------------------------------------------------------------TTTE--------
T ss_pred --------------------------------------------------------------------CCCC--------
T ss_conf --------------------------------------------------------------------1111--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEE
Q ss_conf 12223569999999999999993110489997129998579979999953983999988999458998079988499999
Q 000268 511 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDV 590 (1757)
Q Consensus 511 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LvSGs~DG~I~IWDl~tgkli~tL~gH~~~VtsIaf 590 (1757)
.......|...+.+++|++++.++++++.|+.|++||+.+++.+..+. |...|.+++|
T Consensus 175 ---------------------~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~ 232 (337)
T d1gxra_ 175 ---------------------LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGY 232 (337)
T ss_dssp ---------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEE
T ss_pred ---------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCC-CCCCEEEEEE
T ss_conf ---------------------111111111111101234443211223566553211111100000246-6661579997
Q ss_pred ECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCEEEC
Q ss_conf 03999499999589929999689992289986067525799994799999999579709999989983113543211221
Q 000268 591 HPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFL 670 (1757)
Q Consensus 591 SPdd~~lLaSgs~DG~IrIWDi~tg~~i~~l~~~~~~ItslafSPDG~~LAsgs~DG~I~IWdl~sGe~~~~~~~~~~fs 670 (1757)
+| ++.++++++.|+.|++|++..+..... ..|...|.+++|+|+|++|++++.||.|++|++.+++.+...
T Consensus 233 ~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~------- 303 (337)
T d1gxra_ 233 CP-TGEWLAVGMESSNVEVLHVNKPDKYQL-HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS------- 303 (337)
T ss_dssp CT-TSSEEEEEETTSCEEEEETTSSCEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-------
T ss_pred CC-CCCCCCEECCCCCCCCCCCCCCCCCCC-CCCCCCCCEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEC-------
T ss_conf 15-303000000256421111111110000-124565416999899999999948996999989999799992-------
Q ss_pred CCCCCEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCEEEEEECCCCCCCEE
Q ss_conf 79850788147863312321146768878756578988899952001010016633169878998499961899887368
Q 000268 671 GDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQ 750 (1757)
Q Consensus 671 ~D~r~Li~d~~g~vlD~~tql~p~l~~l~~~L~D~~~~p~p~~~q~l~~~r~~g~~~iafSPDG~~LAvg~d~s~~~~v~ 750 (1757)
.+...+.+++|+|+|++||++ +.++.++
T Consensus 304 -------------------------------------------------~~~~~v~~~~~s~d~~~l~t~---s~D~~I~ 331 (337)
T d1gxra_ 304 -------------------------------------------------KESSSVLSCDISVDDKYIVTG---SGDKKAT 331 (337)
T ss_dssp -------------------------------------------------ECSSCEEEEEECTTSCEEEEE---ETTSCEE
T ss_pred -------------------------------------------------CCCCCEEEEEEECCCCEEEEE---ECCCEEE
T ss_conf -------------------------------------------------699987999992799999999---0899699
Q ss_pred EECC
Q ss_conf 4106
Q 000268 751 LQPL 754 (1757)
Q Consensus 751 l~~l 754 (1757)
+|++
T Consensus 332 vWdl 335 (337)
T d1gxra_ 332 VYEV 335 (337)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 9977
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.5e-40 Score=284.26 Aligned_cols=313 Identities=17% Similarity=0.267 Sum_probs=249.4
Q ss_pred ECCCCEEEEEECCCCEE----EEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEC------------
Q ss_conf 81872699992678708----89980678985999995799999998489669999789997058841------------
Q 000268 261 GSDDRLVKIWSMETAYC----LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR------------ 324 (1757)
Q Consensus 261 GS~DGtIkIWDi~tg~~----l~tL~gHs~~VtsIafSPDg~lLASgS~DGtIrIWDl~tg~~i~~l~------------ 324 (1757)
+..++.+.+|+...... +....+|.+.|++|+|+|+|++||+|+ |+.|+||++.+++.+..+.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~ 112 (388)
T d1erja_ 34 KQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENL 112 (388)
T ss_dssp EECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------
T ss_pred CCCCCCEEEECCCCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEEE-CCEEEEEEECCCCEEEEECCCCCCCCCCCCC
T ss_conf 688970898688777620541076079999689999999999999994-9948999813640576631665443244321
Q ss_pred ------CCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf ------77885599995279995079999928991999946789765525237999632488888888899999643899
Q 000268 325 ------GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCC 398 (1757)
Q Consensus 325 ------gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sI 398 (1757)
+|...|++++|+|++. +|++++.||.|++|+...+...... ..|...|.++
T Consensus 113 ~~~~~~~~~~~V~~l~~s~~~~---~l~s~~~dg~v~i~~~~~~~~~~~~--------------------~~h~~~v~~~ 169 (388)
T d1erja_ 113 NTSSSPSSDLYIRSVCFSPDGK---FLATGAEDRLIRIWDIENRKIVMIL--------------------QGHEQDIYSL 169 (388)
T ss_dssp ------CCCCBEEEEEECTTSS---EEEEEETTSCEEEEETTTTEEEEEE--------------------CCCSSCEEEE
T ss_pred CCCCCCCCCCCEEEEEECCCCC---CCEECCCCCCCCCCCCCCCCCCCCC--------------------CCCCCCCCCC
T ss_conf 1101467789889999889998---0121344411112111111111111--------------------1111111110
Q ss_pred EECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98779988999508950999638999998999998402330377888007998267622333345688788887554555
Q 000268 399 AFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478 (1757)
Q Consensus 399 afSpdG~~LasGs~DG~IrIWDi~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~~~~~~ 478 (1757)
+|++++..+++++.++.+++|+..+ .........+ .....+.+.+..
T Consensus 170 ~~~~~~~~~~~~~~~~~i~~~d~~~---------~~~~~~~~~~-~~~~~~~~~~~~----------------------- 216 (388)
T d1erja_ 170 DYFPSGDKLVSGSGDRTVRIWDLRT---------GQCSLTLSIE-DGVTTVAVSPGD----------------------- 216 (388)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTT---------TEEEEEEECS-SCEEEEEECSTT-----------------------
T ss_pred CCCCCCCCCCCCCCCEEEEEEECCC---------CCCCCCCCCC-CCCCCCCCCCCC-----------------------
T ss_conf 1111111111222101565410111---------1110000124-544211236887-----------------------
Q ss_pred CCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCEEEEE
Q ss_conf 57870899818990999927888888522221122235699999999999999931104899971299985799799999
Q 000268 479 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA 558 (1757)
Q Consensus 479 ~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LvSG 558 (1757)
+..|++++.||.|++|+..++...... .........|...|.+++|+|++++|+++
T Consensus 217 --~~~l~~~~~d~~i~i~~~~~~~~~~~~----------------------~~~~~~~~~h~~~v~~l~~s~~~~~l~s~ 272 (388)
T d1erja_ 217 --GKYIAAGSLDRAVRVWDSETGFLVERL----------------------DSENESGTGHKDSVYSVVFTRDGQSVVSG 272 (388)
T ss_dssp --CCEEEEEETTSCEEEEETTTCCEEEEE----------------------C------CCCSSCEEEEEECTTSSEEEEE
T ss_pred --CCEEEEECCCCEEEEEECCCCCCCEEE----------------------CCCCCCCCCCCCCEEEEEECCCCCEEEEE
T ss_conf --875899738981999634557300010----------------------24433345778987899997999999999
Q ss_pred ECCCEEEEEECCCCC------------EEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCC
Q ss_conf 539839999889994------------58998079988499999039994999995899299996899922899860675
Q 000268 559 IMDCRICVWNAADGS------------LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRF 626 (1757)
Q Consensus 559 s~DG~I~IWDl~tgk------------li~tL~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDi~tg~~i~~l~~~~~ 626 (1757)
+.|+.|++||+.++. .......|...|.+++|+| ++.+|++|+.||.|++||+.+++++..+.+|..
T Consensus 273 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~ 351 (388)
T d1erja_ 273 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN 351 (388)
T ss_dssp ETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred ECCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECC-CCCEEEEEECCCEEEEEECCCCCEEEEEECCCC
T ss_conf 7899289875157764321013444200110124553278999889-999999996989799999999969999968899
Q ss_pred CEEEEEE------CCCCCEEEEEECCCEEEEEECC
Q ss_conf 2579999------4799999999579709999989
Q 000268 627 RLVDGKF------SPDGASIILSDDVGQLYILNTG 655 (1757)
Q Consensus 627 ~Itslaf------SPDG~~LAsgs~DG~I~IWdl~ 655 (1757)
.|+++++ +|++.+||+++.||.|++|++.
T Consensus 352 ~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 352 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CEEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEE
T ss_conf 78999984674258999999999189979997621
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-39 Score=282.81 Aligned_cols=327 Identities=23% Similarity=0.393 Sum_probs=265.4
Q ss_pred CCCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCE
Q ss_conf 11232268998167987899999799999999818726999926787088998067898599999579999999848966
Q 000268 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCI 308 (1757)
Q Consensus 229 ~~~~~k~i~tL~GH~~~V~sIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~gHs~~VtsIafSPDg~lLASgS~DGt 308 (1757)
....+++.++|+||.+.|.+ +++++|++||||+.||+|+|||+.++++++++.+|.+.|.+++|+++ +|++++.|+.
T Consensus 2 ~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~ 78 (342)
T d2ovrb2 2 RRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRT 78 (342)
T ss_dssp HHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSC
T ss_pred CCCCCCCCEEECCCCCCEEE-EEEECCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC--CCCCCEECCC
T ss_conf 89988758898886875099-99978999999918990999989999799999488999899994798--6321000001
Q ss_pred EEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 99997899970588417788559999527999507999992899199994678976552523799963248888888889
Q 000268 309 IRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 388 (1757)
Q Consensus 309 IrIWDl~tg~~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~ 388 (1757)
+++|+............+...+....+.+. .++.+..|+.+.+|+..++.....+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~d~~i~~~~~~~~~~~~~~~~------------------ 135 (342)
T d2ovrb2 79 LKVWNAETGECIHTLYGHTSTVRCMHLHEK-----RVVSGSRDATLRVWDIETGQCLHVLMG------------------ 135 (342)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEETT-----EEEEEETTSEEEEEESSSCCEEEEEEC------------------
T ss_pred CCCCCCCCCCCEECCCCCCEEEEEEECCCC-----CCCCCCCCEEEEEEECCCCCCEEEEEC------------------
T ss_conf 111111100000001233304765202465-----221234440378740355630011100------------------
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 99996438999877998899950895099963899999899999840233037788800799826762233334568878
Q 000268 389 GPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 468 (1757)
Q Consensus 389 ~~~~~~V~sIafSpdG~~LasGs~DG~IrIWDi~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~~ 468 (1757)
.. .....+......+++++.++.|++|+... ...+..+.+|...+..+.+.+
T Consensus 136 --~~--~~~~~~~~~~~~~~~~~~d~~i~~~d~~~---------~~~~~~~~~~~~~~~~~~~~~--------------- 187 (342)
T d2ovrb2 136 --HV--AAVRCVQYDGRRVVSGAYDFMVKVWDPET---------ETCLHTLQGHTNRVYSLQFDG--------------- 187 (342)
T ss_dssp --CS--SCEEEEEECSSCEEEEETTSCEEEEEGGG---------TEEEEEECCCSSCEEEEEECS---------------
T ss_pred --CC--CCCEEECCCCCEEEEECCCCEEEEEECCC---------CEEEEEECCCCCCCCCCCCCC---------------
T ss_conf --11--11000001333024335898699952523---------436678727544421006899---------------
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEE
Q ss_conf 88875545555787089981899099992788888852222112223569999999999999993110489997129998
Q 000268 469 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 548 (1757)
Q Consensus 469 ~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIaf 548 (1757)
..+++++.||.|++|++... ........|...+.++.+
T Consensus 188 -------------~~l~s~~~dg~i~~~d~~~~-----------------------------~~~~~~~~~~~~v~~~~~ 225 (342)
T d2ovrb2 188 -------------IHVVSGSLDTSIRVWDVETG-----------------------------NCIHTLTGHQSLTSGMEL 225 (342)
T ss_dssp -------------SEEEEEETTSCEEEEETTTC-----------------------------CEEEEECCCCSCEEEEEE
T ss_pred -------------CEEEEEECCCEEEEEECCCC-----------------------------EEEEEECCCCCCEEEEEC
T ss_conf -------------99999958993999525565-----------------------------365674166532057706
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEEECC---CCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEE--
Q ss_conf 579979999953983999988999458998079---988499999039994999995899299996899922899860--
Q 000268 549 SLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH---TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEI-- 623 (1757)
Q Consensus 549 SPDG~~LvSGs~DG~I~IWDl~tgkli~tL~gH---~~~VtsIafSPdd~~lLaSgs~DG~IrIWDi~tg~~i~~l~~-- 623 (1757)
+ +++|++++.|+.|++|++...+....+.++ ...+.++.++ +.++++|+.||.|+|||+.++++++.+..
T Consensus 226 ~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~ 300 (342)
T d2ovrb2 226 K--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLKTGEFIRNLVTLE 300 (342)
T ss_dssp E--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEEECT
T ss_pred C--CCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEECEEECCCC---CCEEEEECCCCEEEEEECCCCCEEEEEECCC
T ss_conf 8--9999997489889998655442211122100011010000137---9844999089989999999997989986234
Q ss_pred ---CCCCEEEEEECCCCCEEEEEECCCE----EEEEECCC
Q ss_conf ---6752579999479999999957970----99999899
Q 000268 624 ---SRFRLVDGKFSPDGASIILSDDVGQ----LYILNTGQ 656 (1757)
Q Consensus 624 ---~~~~ItslafSPDG~~LAsgs~DG~----I~IWdl~s 656 (1757)
+...|++++|+|++.+||+|+.||. |++||+..
T Consensus 301 ~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 301 SGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp TGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEECCC
T ss_conf 7898897899998799989999968999704899993899
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.6e-39 Score=280.16 Aligned_cols=264 Identities=14% Similarity=0.197 Sum_probs=194.4
Q ss_pred CCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCE--EEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCC
Q ss_conf 79878999997999999998187269999267870--8899806789859999957999999984896699997899970
Q 000268 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY--CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLP 319 (1757)
Q Consensus 242 H~~~V~sIaFSPDG~~LATGS~DGtIkIWDi~tg~--~l~tL~gHs~~VtsIafSPDg~lLASgS~DGtIrIWDl~tg~~ 319 (1757)
+..+|+|++|+|+|++||+|+.||.|+||++.+++ ++..+.+|.+.|.+++|+|++++|++++.|+.|+||++.++..
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~ 85 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 85 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCC
T ss_conf 99883899998999999999488989999888997899999558899888999979999999997999399986203321
Q ss_pred --EEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf --588417788559999527999507999992899199994678976552523799963248888888889999964389
Q 000268 320 --ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFC 397 (1757)
Q Consensus 320 --i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~s 397 (1757)
...+.+|...|++++|+|++. .|++++.|++|++|++........... ....+...|.+
T Consensus 86 ~~~~~~~~~~~~v~~i~~~p~~~---~l~~~s~d~~i~i~~~~~~~~~~~~~~----------------~~~~~~~~v~~ 146 (371)
T d1k8kc_ 86 KPTLVILRINRAARCVRWAPNEK---KFAVGSGSRVISICYFEQENDWWVCKH----------------IKKPIRSTVLS 146 (371)
T ss_dssp EEEEECCCCSSCEEEEEECTTSS---EEEEEETTSSEEEEEEETTTTEEEEEE----------------ECTTCCSCEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCC---CCEEECCCCCCEEEEEECCCCCCCCCC----------------CCCCCCCCCCC
T ss_conf 10012232211000111111121---100000257630254420334331110----------------01011122211
Q ss_pred EEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99877998899950895099963899999899999840233037788800799826762233334568878888755455
Q 000268 398 CAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNS 477 (1757)
Q Consensus 398 IafSpdG~~LasGs~DG~IrIWDi~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~~~~~ 477 (1757)
++|+|++.+|++|+.|+.|++|+............ .+
T Consensus 147 v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~-------------------~~------------------------ 183 (371)
T d1k8kc_ 147 LDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP-------------------TP------------------------ 183 (371)
T ss_dssp EEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCC-------------------BT------------------------
T ss_pred CCCCCCCCCEECCCCCCEEEEEEECCCCCCCCCCC-------------------CC------------------------
T ss_conf 11111111100013476799984015764310012-------------------21------------------------
Q ss_pred CCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCEEEE
Q ss_conf 55787089981899099992788888852222112223569999999999999993110489997129998579979999
Q 000268 478 WFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA 557 (1757)
Q Consensus 478 ~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LvS 557 (1757)
|+.. ...+........|...|.+++|+|++++|++
T Consensus 184 ------------------~~~~---------------------------~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s 218 (371)
T d1k8kc_ 184 ------------------WGSK---------------------------MPFGELMFESSSSCGWVHGVCFSANGSRVAW 218 (371)
T ss_dssp ------------------TBSC---------------------------CCTTCEEEECCCCSSCEEEEEECSSSSEEEE
T ss_pred ------------------CCCC---------------------------CCCEEEEEECCCCCCCEEEEEEECCCCCCCC
T ss_conf ------------------1111---------------------------1110112440476674789875123321000
Q ss_pred EECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCC
Q ss_conf 953983999988999458998079988499999039994999995899299996899
Q 000268 558 AIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614 (1757)
Q Consensus 558 Gs~DG~I~IWDl~tgkli~tL~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDi~t 614 (1757)
++.|+.|++||+.++..+..+.+|..+|.+++|+| ++.++++ +.|+.+++|....
T Consensus 219 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~-d~~~la~-g~d~~~~~~~~~~ 273 (371)
T d1k8kc_ 219 VSHDSTVCLADADKKMAVATLASETLPLLAVTFIT-ESSLVAA-GHDCFPVLFTYDS 273 (371)
T ss_dssp EETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEE-TTEEEEE-ETTSSCEEEEEET
T ss_pred CCCCCCCEEEEEECCCCEEEEECCCCCCEEEEECC-CCCEEEE-ECCCCEEEEEEEC
T ss_conf 01478605886410121000001466520365469-9979999-8199267877608
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.6e-40 Score=284.68 Aligned_cols=341 Identities=20% Similarity=0.311 Sum_probs=241.3
Q ss_pred EEEEECCCCCCE-EEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 689981679878-9999979999999981872699992678708899806789859999957999999984896699997
Q 000268 235 NIKRVRGHRNAV-YCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1757)
Q Consensus 235 ~i~tL~GH~~~V-~sIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~gHs~~VtsIafSPDg~lLASgS~DGtIrIWD 313 (1757)
...+|+||...| +|++| ++++||||+.||+|+|||+.+++++.++.+|.+.|++++|+++ .+|++++.|+.|++|+
T Consensus 4 ~~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~ 80 (355)
T d1nexb2 4 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 80 (355)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEE
T ss_pred CCEEECCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC-CEEEEEECCCCCCCCC
T ss_conf 758889837886999998--8999999918990999989999399999789998899998699-9999996452443211
Q ss_pred CCCCCCEEEECCCCC--CEEEEEECCCCCCEEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCC---CCCCCCC
Q ss_conf 899970588417788--55999952799950799999289919999467897655252379996324888---8888889
Q 000268 314 LPDGLPISVLRGHTA--AVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRN---MAPSSSA 388 (1757)
Q Consensus 314 l~tg~~i~~l~gH~~--~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~---~~~~~~~ 388 (1757)
+.............. .+....+.+++. .+++++.|+.|++|++...................... .......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (355)
T d1nexb2 81 IKKGCCTHVFEGHNSTVRCLDIVEYKNIK---YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 157 (355)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEEEETTEE---EEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC---EEEEECCCCCEEEEECCCCCEECCCCCCCEECCCEECCCCCCCEEEEE
T ss_conf 11111111110011111111111112322---045543888689998567730012465200010000011234012101
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 99996438999877998899950895099963899999899999840233037788800799826762233334568878
Q 000268 389 GPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 468 (1757)
Q Consensus 389 ~~~~~~V~sIafSpdG~~LasGs~DG~IrIWDi~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~~ 468 (1757)
..+...+ ..+.+++.+++++..|+.|++|++.+ ...+....++...+.++.|++.+
T Consensus 158 ~~~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~------------- 213 (355)
T d1nexb2 158 RGHMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQ---------MKCLYILSGHTDRIYSTIYDHER------------- 213 (355)
T ss_dssp ECCSSCE--EEEEEETTEEEEEETTSCEEEEETTT---------TEEEEEECCCSSCEEEEEEETTT-------------
T ss_pred EECCCCC--CCCCCCCCEEEEECCCCEEEEEECCC---------CCCEEEEECCCCCCCCCCCCCCC-------------
T ss_conf 1002221--00002563344211442044430131---------10001100012332111111210-------------
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEE
Q ss_conf 88875545555787089981899099992788888852222112223569999999999999993110489997129998
Q 000268 469 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 548 (1757)
Q Consensus 469 ~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIaf 548 (1757)
..+++++.|+.|++|+..+ +.....+..|...|.++++
T Consensus 214 -------------~~~~~~~~d~~i~i~d~~~-----------------------------~~~~~~~~~h~~~v~~~~~ 251 (355)
T d1nexb2 214 -------------KRCISASMDTTIRIWDLEN-----------------------------GELMYTLQGHTALVGLLRL 251 (355)
T ss_dssp -------------TEEEEEETTSCEEEEETTT-----------------------------CCEEEEECCCSSCCCEEEE
T ss_pred -------------EEEECCCCCCEEEEEECCC-----------------------------CCCCCCCCCCCCCCCCCCC
T ss_conf -------------0210124563687630122-----------------------------1111111111111111123
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEE-EEECCCC
Q ss_conf 579979999953983999988999458998079988499999039994999995899299996899922899-8606752
Q 000268 549 SLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRI-YEISRFR 627 (1757)
Q Consensus 549 SPDG~~LvSGs~DG~I~IWDl~tgkli~tL~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDi~tg~~i~~-l~~~~~~ 627 (1757)
+ +++|++|+.||.|++||+.++... +..|...+.++.+.+.++.++++| .|+.|+|||+.+++++.. +..|...
T Consensus 252 ~--~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~ 326 (355)
T d1nexb2 252 S--DKFLVSAAADGSIRGWDANDYSRK--FSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQ 326 (355)
T ss_dssp C--SSEEEEECTTSEEEEEETTTCCEE--EEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSE
T ss_pred C--CCEEEEEECCCCCCCCCCCCCCEE--CCCCCCCCEEEEEECCCCCEEEEE-ECCEEEEEECCCCCEEEEEECCCCCC
T ss_conf 2--100333201111111111111100--012468822999984999899998-09979999999997988884589998
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 57999947999999995797099999
Q 000268 628 LVDGKFSPDGASIILSDDVGQLYILN 653 (1757)
Q Consensus 628 ItslafSPDG~~LAsgs~DG~I~IWd 653 (1757)
|++++|+|+ .++++++.||.++||-
T Consensus 327 V~~v~~~~~-~~~~~~s~dg~~~l~~ 351 (355)
T d1nexb2 327 IWSVNFKGK-TLVAAVEKDGQSFLEI 351 (355)
T ss_dssp EEEEEEETT-EEEEEEESSSCEEEEE
T ss_pred EEEEEECCC-EEEEEEECCCCEEEEE
T ss_conf 999998399-1999998989099999
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3.4e-39 Score=279.34 Aligned_cols=289 Identities=12% Similarity=0.123 Sum_probs=223.2
Q ss_pred CCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCE
Q ss_conf 67987899999799999999818726999926787088998067898599999579999999848966999978999705
Q 000268 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI 320 (1757)
Q Consensus 241 GH~~~V~sIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~gHs~~VtsIafSPDg~lLASgS~DGtIrIWDl~tg~~i 320 (1757)
.+++.+.+++++|+|+.||.++ ++.|.+|++.++.....+.+|...|++++|+|++++||+|+.||.|++|++.++...
T Consensus 15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~ 93 (311)
T d1nr0a1 15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 93 (311)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCCEEEEEEEECCCCC
T ss_conf 7788759999969989999996-999999999999661797478888899999489996722556736746631011110
Q ss_pred --EEECCCCCCEEEEEECCCCCCEEEEEEEEC--CCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf --884177885599995279995079999928--9919999467897655252379996324888888888999996438
Q 000268 321 --SVLRGHTAAVTAIAFSPRPGSVYQLLSSSD--DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF 396 (1757)
Q Consensus 321 --~~l~gH~~~VtsIafSPdg~~~~~LvSgs~--DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~ 396 (1757)
..+.+|...|.+++|+|++. +|++++. +..+++|++.+++....+ ..|...|.
T Consensus 94 ~~~~~~~~~~~v~~v~~s~d~~---~l~~~~~~~~~~~~v~~~~~~~~~~~l--------------------~~h~~~v~ 150 (311)
T d1nr0a1 94 LKTTIPVFSGPVKDISWDSESK---RIAAVGEGRERFGHVFLFDTGTSNGNL--------------------TGQARAMN 150 (311)
T ss_dssp EEEEEECSSSCEEEEEECTTSC---EEEEEECCSSCSEEEEETTTCCBCBCC--------------------CCCSSCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCC--------------------CCCCCCCC
T ss_conf 0001343357543323331110---001111221111111111111111111--------------------11111111
Q ss_pred EEEECCCCCE-EEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9998779988-999508950999638999998999998402330377888007998267622333345688788887554
Q 000268 397 CCAFNANGTV-FVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475 (1757)
Q Consensus 397 sIafSpdG~~-LasGs~DG~IrIWDi~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~~~ 475 (1757)
+++|+|++.+ |++|+.|+.|++|++++ ......+..|...|.++.|+|++
T Consensus 151 ~v~~~~~~~~~l~sgs~d~~i~i~d~~~---------~~~~~~~~~~~~~i~~v~~~p~~-------------------- 201 (311)
T d1nr0a1 151 SVDFKPSRPFRIISGSDDNTVAIFEGPP---------FKFKSTFGEHTKFVHSVRYNPDG-------------------- 201 (311)
T ss_dssp EEEECSSSSCEEEEEETTSCEEEEETTT---------BEEEEEECCCSSCEEEEEECTTS--------------------
T ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCC--------------------
T ss_conf 1111211101200011221111111111---------11111111111111112347642--------------------
Q ss_pred CCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCEE
Q ss_conf 55557870899818990999927888888522221122235699999999999999931104899971299985799799
Q 000268 476 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFV 555 (1757)
Q Consensus 476 ~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~L 555 (1757)
..+++++.||.+++|+..++...... ........+|...|++++|+|++++|
T Consensus 202 ------~~l~~~~~d~~v~~~d~~~~~~~~~~----------------------~~~~~~~~~h~~~V~~~~~s~~~~~l 253 (311)
T d1nr0a1 202 ------SLFASTGGDGTIVLYNGVDGTKTGVF----------------------EDDSLKNVAHSGSVFGLTWSPDGTKI 253 (311)
T ss_dssp ------SEEEEEETTSCEEEEETTTCCEEEEC----------------------BCTTSSSCSSSSCEEEEEECTTSSEE
T ss_pred ------CCCCCCCCCCCCCCCCCCCCCCCCCC----------------------CCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf ------21211111111100012446411222----------------------11111110024653210247889999
Q ss_pred EEEECCCEEEEEECCCCCEEEEEECCCC---CEEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 9995398399998899945899807998---849999903999499999589929999689
Q 000268 556 LAAIMDCRICVWNAADGSLVHSLTGHTE---STYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1757)
Q Consensus 556 vSGs~DG~I~IWDl~tgkli~tL~gH~~---~VtsIafSPdd~~lLaSgs~DG~IrIWDi~ 613 (1757)
++|+.|+.|+|||+.++++++++..|.. .+.++.|+ +..+++++.||.|++||.+
T Consensus 254 ~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~---~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 254 ASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT---KQALVSISANGFINFVNPE 311 (311)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEEC---SSCEEEEETTCCEEEEETT
T ss_pred EEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEEC---CCEEEEEECCCEEEEEECC
T ss_conf 999379969999999996999997999863329999951---9999999899979999588
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=8.7e-38 Score=269.67 Aligned_cols=294 Identities=18% Similarity=0.230 Sum_probs=246.4
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCE
Q ss_conf 70889980678985999995799999998489669999789997058841778855999952799950799999289919
Q 000268 275 AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354 (1757)
Q Consensus 275 g~~l~tL~gHs~~VtsIafSPDg~lLASgS~DGtIrIWDl~tg~~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtI 354 (1757)
.+..++|+||.+.|++|+|+|++.+||+|+.||.|+|||+.++..+..+..|...|.+++|+|++. ++++++.|+.+
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~---~l~~~~~d~~i 121 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN---YVACGGLDNIC 121 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSS---EEEEEETTCCE
T ss_pred EEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCE---EEEEECCCCEE
T ss_conf 065279888789888999989999999997899555631021025799724653377567601211---44310133201
Q ss_pred EEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 99946789765525237999632488888888899999643899987799889995089509996389999989999984
Q 000268 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNH 434 (1757)
Q Consensus 355 rIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sIafSpdG~~LasGs~DG~IrIWDi~t~~~~~s~~~~~ 434 (1757)
.+|+............ ....+.......... .+..++....+.....+.... ..
T Consensus 122 ~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------~~ 175 (340)
T d1tbga_ 122 SIYNLKTREGNVRVSR----------------ELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIET---------GQ 175 (340)
T ss_dssp EEEESSSSCSCCCEEE----------------EECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTT---------TE
T ss_pred ECCCCCCCCCCCCCCE----------------ECCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCC---------CC
T ss_conf 0133222212221110----------------013542110111111-111111112445432001232---------21
Q ss_pred CEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 02330377888007998267622333345688788887554555578708998189909999278888885222211222
Q 000268 435 EIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 514 (1757)
Q Consensus 435 ~i~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~ 514 (1757)
.......+...+....+.+.. ..+++++.|+.|++||+.++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~d~~v~i~d~~~~------------- 216 (340)
T d1tbga_ 176 QTTTFTGHTGDVMSLSLAPDT--------------------------RLFVSGACDASAKLWDVREG------------- 216 (340)
T ss_dssp EEEEEECCSSCEEEEEECTTS--------------------------SEEEEEETTTEEEEEETTTT-------------
T ss_pred CCCCCCCCCEEEEEECCCCCC--------------------------CEEEEEECCCEEEEEECCCC-------------
T ss_conf 111123310157630012442--------------------------12687605736999999999-------------
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE--CCCCCEEEEEEEC
Q ss_conf 35699999999999999931104899971299985799799999539839999889994589980--7998849999903
Q 000268 515 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT--GHTESTYVLDVHP 592 (1757)
Q Consensus 515 ~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LvSGs~DG~I~IWDl~tgkli~tL~--gH~~~VtsIafSP 592 (1757)
.....+..|...|++++|+|++.+|++|+.|+.|++|++.....+..+. .+...|.+++|+|
T Consensus 217 ----------------~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 280 (340)
T d1tbga_ 217 ----------------MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK 280 (340)
T ss_dssp ----------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECS
T ss_pred ----------------CEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECC
T ss_conf ----------------4889995788985899997998999999699969997521221111111224457458999989
Q ss_pred CCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 9994999995899299996899922899860675257999947999999995797099999
Q 000268 593 FNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 653 (1757)
Q Consensus 593 dd~~lLaSgs~DG~IrIWDi~tg~~i~~l~~~~~~ItslafSPDG~~LAsgs~DG~I~IWd 653 (1757)
++.+|++|+.||.|++||+.+++++..+.+|...|++++|+||+.+|++++.||.|++|+
T Consensus 281 -~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 281 -SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp -SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred -CCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEECCCCEEEEEC
T ss_conf -999999997979899999999939899848999789999908999999990699799859
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3.8e-38 Score=272.13 Aligned_cols=287 Identities=14% Similarity=0.144 Sum_probs=240.3
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECCCC
Q ss_conf 67898599999579999999848966999978999705884177885599995279995079999928991999946789
Q 000268 283 GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 362 (1757)
Q Consensus 283 gHs~~VtsIafSPDg~lLASgS~DGtIrIWDl~tg~~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg 362 (1757)
.+.+.+..++++|+++.|+.+. ++.|.+|++.++.....+.+|...|++++|+|++. +|++|+.||+|++|++...
T Consensus 15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~---~latg~~dg~i~iwd~~~~ 90 (311)
T d1nr0a1 15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY---YCASGDVHGNVRIWDTTQT 90 (311)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSS---EEEEEETTSEEEEEESSST
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCC---EEECCCCCCEEEEEEEECC
T ss_conf 7788759999969989999996-99999999999966179747888889999948999---6722556736746631011
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEC--CCEEEEECCCCCCCCCCCCCCCCEEEEC
Q ss_conf 76552523799963248888888889999964389998779988999508--9509996389999989999984023303
Q 000268 363 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS--DTLARVWNACKPNTDDSDQPNHEIDVLS 440 (1757)
Q Consensus 363 ~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sIafSpdG~~LasGs~--DG~IrIWDi~t~~~~~s~~~~~~i~~l~ 440 (1757)
.......+ ..|...|.+++|+|++.+|++++. +..+++|++.+ ......+.
T Consensus 91 ~~~~~~~~------------------~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~---------~~~~~~l~ 143 (311)
T d1nr0a1 91 THILKTTI------------------PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT---------GTSNGNLT 143 (311)
T ss_dssp TCCEEEEE------------------ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT---------CCBCBCCC
T ss_pred CCCCCCCC------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------CCCCCCCC
T ss_conf 11000013------------------4335754332333111000111122111111111111---------11111111
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77888007998267622333345688788887554555578708998189909999278888885222211222356999
Q 000268 441 GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPP 520 (1757)
Q Consensus 441 gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~ 520 (1757)
+|...|.+++|+|++ ...+++|+.||.|++||+++.+
T Consensus 144 ~h~~~v~~v~~~~~~-------------------------~~~l~sgs~d~~i~i~d~~~~~------------------ 180 (311)
T d1nr0a1 144 GQARAMNSVDFKPSR-------------------------PFRIISGSDDNTVAIFEGPPFK------------------ 180 (311)
T ss_dssp CCSSCEEEEEECSSS-------------------------SCEEEEEETTSCEEEEETTTBE------------------
T ss_pred CCCCCCCCCCCCCCC-------------------------EEEECCCCCCCCCCCCCCCCCC------------------
T ss_conf 111111111112111-------------------------0120001122111111111111------------------
Q ss_pred CCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE-------CCCCCEEEEEEECC
Q ss_conf 99999999999931104899971299985799799999539839999889994589980-------79988499999039
Q 000268 521 PPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT-------GHTESTYVLDVHPF 593 (1757)
Q Consensus 521 ~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LvSGs~DG~I~IWDl~tgkli~tL~-------gH~~~VtsIafSPd 593 (1757)
.......|...|+++.|+|++++|++++.|+.|++|+..++..+..+. +|.+.|++++|+|
T Consensus 181 -----------~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~- 248 (311)
T d1nr0a1 181 -----------FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP- 248 (311)
T ss_dssp -----------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-
T ss_pred -----------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-
T ss_conf -----------11111111111111234764221211111111100012446411222111111100246532102478-
Q ss_pred CCCEEEEEECCCCEEEEECCCCCEEEEEEECCC-CEEEEEECCCCCEEEEEECCCEEEEEECC
Q ss_conf 994999995899299996899922899860675-25799994799999999579709999989
Q 000268 594 NPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRF-RLVDGKFSPDGASIILSDDVGQLYILNTG 655 (1757)
Q Consensus 594 d~~lLaSgs~DG~IrIWDi~tg~~i~~l~~~~~-~ItslafSPDG~~LAsgs~DG~I~IWdl~ 655 (1757)
++.+|++|+.||.|+|||+.++++++.+..+.. ....+.+.+++.+|++++.||.|.+|+.+
T Consensus 249 ~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 249 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCEEEEEECCCEEEEEECC
T ss_conf 899999993799699999999969999979998633299999519999999899979999588
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.3e-37 Score=268.57 Aligned_cols=290 Identities=16% Similarity=0.165 Sum_probs=209.5
Q ss_pred CEEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEE-CCCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 22689981679878999997999999998187269999267870889980-67898599999579999999848966999
Q 000268 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDLAVSSNNALVASASNDCIIRV 311 (1757)
Q Consensus 233 ~k~i~tL~GH~~~V~sIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~-gHs~~VtsIafSPDg~lLASgS~DGtIrI 311 (1757)
++..+++.||.++|+|++|+|+|++||+|+.||+|++||+.+++.+..+. +|...|++++|+|++.++ +++.|+.+++
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~-~~~~d~~v~~ 80 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF-TVSWDDHLKV 80 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE-EEETTTEEEE
T ss_pred CCCCEECCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCEEE-CCCCEEEEEE
T ss_conf 861368488887828999979999999990899299999999968899837887748998840331121-0231026887
Q ss_pred EECCCCC---CEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 9789997---0588417788559999527999507999992899199994678976552523799963248888888889
Q 000268 312 WRLPDGL---PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 388 (1757)
Q Consensus 312 WDl~tg~---~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~ 388 (1757)
|+..... .......+...+.+++|++++. .+ +++.++.+.+|+..... ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~---~~-~~~~~~~i~~~~~~~~~---~~-------------------- 133 (299)
T d1nr0a2 81 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGD---IA-VAACYKHIAIYSHGKLT---EV-------------------- 133 (299)
T ss_dssp ECSSSSSSCTTSCCEEECSSCEEEEEECTTSS---CE-EEEESSEEEEEETTEEE---EE--------------------
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CC-CCCCCCCCCCCCCCCCC---CC--------------------
T ss_conf 31677620111000111134432100112211---11-12222222111111111---10--------------------
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 99996438999877998899950895099963899999899999840233037788800799826762233334568878
Q 000268 389 GPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 468 (1757)
Q Consensus 389 ~~~~~~V~sIafSpdG~~LasGs~DG~IrIWDi~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~~ 468 (1757)
.....+.+++|+|++.+|++|+.|+.|++|++.+... .......|...|.+++|+|++
T Consensus 134 -~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~--------~~~~~~~~~~~i~~~~~~~~~------------- 191 (299)
T d1nr0a2 134 -PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV--------SEVKTIVHPAEITSVAFSNNG------------- 191 (299)
T ss_dssp -ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE--------EEEEEEECSSCEEEEEECTTS-------------
T ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCCCC-------------
T ss_conf -1111233221111111111111111111111111111--------111111111111111111111-------------
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEE
Q ss_conf 88875545555787089981899099992788888852222112223569999999999999993110489997129998
Q 000268 469 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 548 (1757)
Q Consensus 469 ~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIaf 548 (1757)
..+++++.|+.|++|++.++... .....+..|...|++++|
T Consensus 192 -------------~~l~~~~~d~~i~~~~~~~~~~~--------------------------~~~~~~~~h~~~v~~l~~ 232 (299)
T d1nr0a2 192 -------------AFLVATDQSRKVIPYSVANNFEL--------------------------AHTNSWTFHTAKVACVSW 232 (299)
T ss_dssp -------------SEEEEEETTSCEEEEEGGGTTEE--------------------------SCCCCCCCCSSCEEEEEE
T ss_pred -------------CCCCCCCCCCCCCCCCCCCCCCC--------------------------CCCCCCCCCCCCCCCCCC
T ss_conf -------------11111111111111111111111--------------------------111111111111111124
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEE--EC-CCCCEEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 579979999953983999988999458998--07-998849999903999499999589929999689
Q 000268 549 SLDNRFVLAAIMDCRICVWNAADGSLVHSL--TG-HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1757)
Q Consensus 549 SPDG~~LvSGs~DG~I~IWDl~tgkli~tL--~g-H~~~VtsIafSPdd~~lLaSgs~DG~IrIWDi~ 613 (1757)
+|++.+|++|+.|+.|++||+.++.....+ .. +...+.++.|.+ +.+|++++.|+.|++||+.
T Consensus 233 s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 233 SPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN--ETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp CTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEE--TTEEEEEETTSCEEEEECC
T ss_pred CCCCCCEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCEEEEEECC--CCEEEEEECCCEEEEEECC
T ss_conf 66645138882899799998999973148983489889689999779--8999999289979999444
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.6e-36 Score=255.69 Aligned_cols=297 Identities=23% Similarity=0.291 Sum_probs=229.0
Q ss_pred EEEEECCCCCE-EEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEE
Q ss_conf 89980678985-99999579999999848966999978999705884177885599995279995079999928991999
Q 000268 278 LASCRGHEGDI-TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356 (1757)
Q Consensus 278 l~tL~gHs~~V-tsIafSPDg~lLASgS~DGtIrIWDl~tg~~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrI 356 (1757)
..+|+||...| +|++| ++++||+|+.||+|+|||+.+++++..+.+|.+.|++++|+|++ +|++++.|++|++
T Consensus 5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~----~l~s~s~D~~i~i 78 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG----ILVSGSTDRTVRV 78 (355)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT----EEEEEETTCCEEE
T ss_pred CEEECCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCC----EEEEEECCCCCCC
T ss_conf 58889837886999998--89999999189909999899993999997899988999986999----9999964524432
Q ss_pred EECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCC----
Q ss_conf 9467897655252379996324888888888999996438999877998899950895099963899999899999----
Q 000268 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQP---- 432 (1757)
Q Consensus 357 WDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sIafSpdG~~LasGs~DG~IrIWDi~t~~~~~s~~~---- 432 (1757)
|++........... .........+.+.+++..+++++.|+.|++|++.+.........
T Consensus 79 w~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~ 140 (355)
T d1nexb2 79 WDIKKGCCTHVFEG------------------HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 140 (355)
T ss_dssp EETTTTEEEEEECC------------------CSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CC
T ss_pred CCCCCCCCCCCCCC------------------CCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECCCCCCCEE
T ss_conf 11111111111100------------------111111111111123220455438886899985677300124652000
Q ss_pred ----------CCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCC
Q ss_conf ----------8402330377888007998267622333345688788887554555578708998189909999278888
Q 000268 433 ----------NHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR 502 (1757)
Q Consensus 433 ----------~~~i~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k 502 (1757)
.........|...+..... .+..++++..|+.+++|++.+.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----------------------------~~~~~~~~~~d~~i~~~d~~~~~ 192 (355)
T d1nexb2 141 PLVFHTPEENPYFVGVLRGHMASVRTVSG----------------------------HGNIVVSGSYDNTLIVWDVAQMK 192 (355)
T ss_dssp CEEESCTTTCTTEEEEEECCSSCEEEEEE----------------------------ETTEEEEEETTSCEEEEETTTTE
T ss_pred CCCEECCCCCCCEEEEEEECCCCCCCCCC----------------------------CCCEEEEECCCCEEEEEECCCCC
T ss_conf 10000011234012101100222100002----------------------------56334421144204443013110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCC
Q ss_conf 88522221122235699999999999999931104899971299985799799999539839999889994589980799
Q 000268 503 SHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHT 582 (1757)
Q Consensus 503 ~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LvSGs~DG~I~IWDl~tgkli~tL~gH~ 582 (1757)
.......+...+.++.|++++.++++++.|+.|++|+..++.++..+.+|.
T Consensus 193 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~ 243 (355)
T d1nexb2 193 -----------------------------CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHT 243 (355)
T ss_dssp -----------------------------EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred -----------------------------CEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf -----------------------------001100012332111111210021012456368763012211111111111
Q ss_pred CCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEE-EECCCCCEEEEEECCCEEEEEECCCCCCCC
Q ss_conf 8849999903999499999589929999689992289986067525799-994799999999579709999989983113
Q 000268 583 ESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDG-KFSPDGASIILSDDVGQLYILNTGQGESQK 661 (1757)
Q Consensus 583 ~~VtsIafSPdd~~lLaSgs~DG~IrIWDi~tg~~i~~l~~~~~~Itsl-afSPDG~~LAsgs~DG~I~IWdl~sGe~~~ 661 (1757)
..|.++++++ .++++++.||.|++||+.++...... |...+..+ .|++++.+|++++ ||.|++|++.+|+.+.
T Consensus 244 ~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~~~~ 317 (355)
T d1nexb2 244 ALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRKFSY--HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVH 317 (355)
T ss_dssp SCCCEEEECS---SEEEEECTTSEEEEEETTTCCEEEEE--ECTTCCCCCEEEECSSEEEEEE-TTEEEEEETTTCCBCC
T ss_pred CCCCCCCCCC---CEEEEEECCCCCCCCCCCCCCEECCC--CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCEEE
T ss_conf 1111112321---00333201111111111111100012--4688229999849998999980-9979999999997988
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=9.2e-37 Score=262.67 Aligned_cols=291 Identities=17% Similarity=0.207 Sum_probs=230.9
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEC-CCCCCEEEEEECCCCCCEEEEEEEECCCC
Q ss_conf 70889980678985999995799999998489669999789997058841-77885599995279995079999928991
Q 000268 275 AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGT 353 (1757)
Q Consensus 275 g~~l~tL~gHs~~VtsIafSPDg~lLASgS~DGtIrIWDl~tg~~i~~l~-gH~~~VtsIafSPdg~~~~~LvSgs~DGt 353 (1757)
|...+++.||.+.|++++|+|++++|++|+.||.|++||+.+++.+..+. +|...|++++|+|++. +++++.|+.
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~----~~~~~~d~~ 77 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD----LFTVSWDDH 77 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC----EEEEETTTE
T ss_pred CCCCEECCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCE----EECCCCEEE
T ss_conf 8613684888878289999799999999908992999999999688998378877489988403311----210231026
Q ss_pred EEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCC
Q ss_conf 99994678976552523799963248888888889999964389998779988999508950999638999998999998
Q 000268 354 CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPN 433 (1757)
Q Consensus 354 IrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sIafSpdG~~LasGs~DG~IrIWDi~t~~~~~s~~~~ 433 (1757)
+++|+.......... .....+...+.+++|++++.++++++ ++.+.+|+...
T Consensus 78 v~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~---------- 129 (299)
T d1nr0a2 78 LKVVPAGGSGVDSSK-----------------AVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK---------- 129 (299)
T ss_dssp EEEECSSSSSSCTTS-----------------CCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE----------
T ss_pred EEEECCCCCCCCCCC-----------------CCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC----------
T ss_conf 887316776201110-----------------00111134432100112211111222-22221111111----------
Q ss_pred CCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 40233037788800799826762233334568878888755455557870899818990999927888888522221122
Q 000268 434 HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQA 513 (1757)
Q Consensus 434 ~~i~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~ 513 (1757)
..... ....+.+++|+|++ ..+++++.||.+.+||+.+...
T Consensus 130 -~~~~~--~~~~~~~~~~s~~~--------------------------~~l~~g~~dg~i~~~d~~~~~~---------- 170 (299)
T d1nr0a2 130 -LTEVP--ISYNSSCVALSNDK--------------------------QFVAVGGQDSKVHVYKLSGASV---------- 170 (299)
T ss_dssp -EEEEE--CSSCEEEEEECTTS--------------------------CEEEEEETTSEEEEEEEETTEE----------
T ss_pred -CCCCC--CCCCCCCCCCCCCC--------------------------CCCCCCCCCCCCCCCCCCCCCC----------
T ss_conf -11101--11123322111111--------------------------1111111111111111111111----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEE---EEEECCCCCEEEEEE
Q ss_conf 23569999999999999993110489997129998579979999953983999988999458---998079988499999
Q 000268 514 YHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLV---HSLTGHTESTYVLDV 590 (1757)
Q Consensus 514 ~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LvSGs~DG~I~IWDl~tgkli---~tL~gH~~~VtsIaf 590 (1757)
.......|...|++++|+|++.+|++++.|+.|++|++.++... ..+.+|...|++++|
T Consensus 171 ------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 232 (299)
T d1nr0a2 171 ------------------SEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSW 232 (299)
T ss_dssp ------------------EEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEE
T ss_pred ------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf ------------------11111111111111111111111111111111111111111111111111111111111124
Q ss_pred ECCCCCEEEEEECCCCEEEEECCCCCEEEEEE--ECCCCEEEEEECCCCCEEEEEECCCEEEEEECC
Q ss_conf 03999499999589929999689992289986--067525799994799999999579709999989
Q 000268 591 HPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE--ISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 655 (1757)
Q Consensus 591 SPdd~~lLaSgs~DG~IrIWDi~tg~~i~~l~--~~~~~ItslafSPDG~~LAsgs~DG~I~IWdl~ 655 (1757)
+| ++.+|++|+.||.|++||+.++.....+. .+...+....+++++.+|++++.||.|++|++.
T Consensus 233 s~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 233 SP-DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp CT-TSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred CC-CCCCEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCEEEEEECCCCEEEEEECCCEEEEEECC
T ss_conf 66-6451388828997999989999731489834898896899997798999999289979999444
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.9e-35 Score=251.48 Aligned_cols=335 Identities=21% Similarity=0.327 Sum_probs=252.5
Q ss_pred EECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEE
Q ss_conf 92678708899806789859999957999999984896699997899970588417788559999527999507999992
Q 000268 270 WSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS 349 (1757)
Q Consensus 270 WDi~tg~~l~tL~gHs~~VtsIafSPDg~lLASgS~DGtIrIWDl~tg~~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs 349 (1757)
|+..+.++.+.|+||.+.|.+ +++++|++||+|+.||+|+|||+.+++++..+.+|.+.|.+++|+++ +|++++
T Consensus 1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~-----~l~s~s 74 (342)
T d2ovrb2 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN-----IIISGS 74 (342)
T ss_dssp HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT-----EEEEEE
T ss_pred CCCCCCCCCEEECCCCCCEEE-EEEECCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC-----CCCCCE
T ss_conf 989988758898886875099-99978999999918990999989999799999488999899994798-----632100
Q ss_pred CCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCC
Q ss_conf 89919999467897655252379996324888888888999996438999877998899950895099963899999899
Q 000268 350 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDS 429 (1757)
Q Consensus 350 ~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sIafSpdG~~LasGs~DG~IrIWDi~t~~~~~s 429 (1757)
.|+.+++|+........... .....+....+ ....++.+..|+.+.+|+..++
T Consensus 75 ~D~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~----- 127 (342)
T d2ovrb2 75 TDRTLKVWNAETGECIHTLY--------------------GHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETG----- 127 (342)
T ss_dssp TTSCEEEEETTTTEEEEEEC--------------------CCSSCEEEEEE--ETTEEEEEETTSEEEEEESSSC-----
T ss_pred ECCCCCCCCCCCCCCEECCC--------------------CCCEEEEEEEC--CCCCCCCCCCCEEEEEEECCCC-----
T ss_conf 00011111111000000012--------------------33304765202--4652212344403787403556-----
Q ss_pred CCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCC
Q ss_conf 99984023303778880079982676223333456887888875545555787089981899099992788888852222
Q 000268 430 DQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAAR 509 (1757)
Q Consensus 430 ~~~~~~i~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~ 509 (1757)
.....+............. ...+++++.|+.+++|+.....
T Consensus 128 ----~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~d~~i~~~d~~~~~------- 168 (342)
T d2ovrb2 128 ----QCLHVLMGHVAAVRCVQYD----------------------------GRRVVSGAYDFMVKVWDPETET------- 168 (342)
T ss_dssp ----CEEEEEECCSSCEEEEEEC----------------------------SSCEEEEETTSCEEEEEGGGTE-------
T ss_pred ----CCEEEEECCCCCCEEECCC----------------------------CCEEEEECCCCEEEEEECCCCE-------
T ss_conf ----3001110011110000013----------------------------3302433589869995252343-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEE
Q ss_conf 11222356999999999999999311048999712999857997999995398399998899945899807998849999
Q 000268 510 WTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLD 589 (1757)
Q Consensus 510 w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LvSGs~DG~I~IWDl~tgkli~tL~gH~~~VtsIa 589 (1757)
....+..|...+ ..+++++.++++++.||.|++||+..++++..+.+|...+.++.
T Consensus 169 ----------------------~~~~~~~~~~~~--~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~ 224 (342)
T d2ovrb2 169 ----------------------CLHTLQGHTNRV--YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME 224 (342)
T ss_dssp ----------------------EEEEECCCSSCE--EEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEE
T ss_pred ----------------------EEEEECCCCCCC--CCCCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEE
T ss_conf ----------------------667872754442--10068999999995899399952556536567416653205770
Q ss_pred EECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCC---CEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCC
Q ss_conf 9039994999995899299996899922899860675---2579999479999999957970999998998311354321
Q 000268 590 VHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRF---RLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYD 666 (1757)
Q Consensus 590 fSPdd~~lLaSgs~DG~IrIWDi~tg~~i~~l~~~~~---~ItslafSPDG~~LAsgs~DG~I~IWdl~sGe~~~~~~~~ 666 (1757)
+++ .++++++.|+.|++|++...+....+..+.. .+.++ ++++.++++++.||.|++|++.+|+.+......
T Consensus 225 ~~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~ 299 (342)
T d2ovrb2 225 LKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL--QFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTL 299 (342)
T ss_dssp EET---TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEE--EECSSEEEEEETTSEEEEEETTTCCEEEEEEEC
T ss_pred CCC---CEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEECEEEC--CCCCCEEEEECCCCEEEEEECCCCCEEEEEECC
T ss_conf 689---999997489889998655442211122100011010000--137984499908998999999999798998623
Q ss_pred EEECCCCCCEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCEEEEEECCC-C
Q ss_conf 122179850788147863312321146768878756578988899952001010016633169878998499961899-8
Q 000268 667 QFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFS-L 745 (1757)
Q Consensus 667 ~~fs~D~r~Li~d~~g~vlD~~tql~p~l~~l~~~L~D~~~~p~p~~~q~l~~~r~~g~~~iafSPDG~~LAvg~d~s-~ 745 (1757)
...++...+..++|+|+|.++|+|..++ .
T Consensus 300 --------------------------------------------------~~~~~~~~v~~v~~s~~~~~la~g~~dGt~ 329 (342)
T d2ovrb2 300 --------------------------------------------------ESGGSGGVVWRIRASNTKLVCAVGSRNGTE 329 (342)
T ss_dssp --------------------------------------------------TTGGGTCEEEEEEECSSEEEEEEECSSSSS
T ss_pred --------------------------------------------------CCCCCCCCEEEEEECCCCCEEEEEECCCCC
T ss_conf --------------------------------------------------478988978999987999899999689997
Q ss_pred CCCEEEECCC
Q ss_conf 8736841069
Q 000268 746 DQGYQLQPLA 755 (1757)
Q Consensus 746 ~~~v~l~~l~ 755 (1757)
+..+.+|++.
T Consensus 330 ~~~l~~~Df~ 339 (342)
T d2ovrb2 330 ETKLLVLDFD 339 (342)
T ss_dssp CCEEEEEECC
T ss_pred EEEEEEEECC
T ss_conf 0489999389
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.6e-36 Score=259.59 Aligned_cols=316 Identities=19% Similarity=0.285 Sum_probs=227.1
Q ss_pred EEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEE
Q ss_conf 99267870889980678985999995799999998489669999789997058841778855999952799950799999
Q 000268 269 IWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSS 348 (1757)
Q Consensus 269 IWDi~tg~~l~tL~gHs~~VtsIafSPDg~lLASgS~DGtIrIWDl~tg~~i~~l~gH~~~VtsIafSPdg~~~~~LvSg 348 (1757)
.|... .....+|+||.+.|++|+|+|++.+||+|+.||+|+|||+.+++.+..+.+|...|.+++|+|++. +++++
T Consensus 2 ~w~p~-~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~---~~~~~ 77 (317)
T d1vyhc1 2 EWIPR-PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK---LLASC 77 (317)
T ss_dssp CCCCC-SSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSS---EEEEE
T ss_pred CCCCC-CCCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCC---CCCCC
T ss_conf 36898-984489858888768999938989999993899299998999979999957888677776301111---01111
Q ss_pred ECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCC
Q ss_conf 28991999946789765525237999632488888888899999643899987799889995089509996389999989
Q 000268 349 SDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDD 428 (1757)
Q Consensus 349 s~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sIafSpdG~~LasGs~DG~IrIWDi~t~~~~~ 428 (1757)
..++.+.+|+.........+ ..+...+.++.|++++..+++++.|+.+++|++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----- 132 (317)
T d1vyhc1 78 SADMTIKLWDFQGFECIRTM--------------------HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT----- 132 (317)
T ss_dssp ETTSCCCEEETTSSCEEECC--------------------CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-----
T ss_pred CCCCCCCCCCCCCCCCCCCC--------------------CCCCCCCEEEECCCCCCEEEEECCCCCEEEEECCC-----
T ss_conf 11111011100111111110--------------------00000000000169985577652675235751144-----
Q ss_pred CCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCC
Q ss_conf 99998402330377888007998267622333345688788887554555578708998189909999278888885222
Q 000268 429 SDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAA 508 (1757)
Q Consensus 429 s~~~~~~i~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~ 508 (1757)
...+..+.+|...+.+++|++++ ..|++++.|+.+++|+..+.
T Consensus 133 ----~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~l~~~~~d~~v~~~~~~~~------- 175 (317)
T d1vyhc1 133 ----GYCVKTFTGHREWVRMVRPNQDG--------------------------TLIASCSNDQTVRVWVVATK------- 175 (317)
T ss_dssp ----CCEEEEEECCSSCEEEEEECTTS--------------------------SEEEEEETTSCEEEEETTTC-------
T ss_pred ----CEEEEEECCCCCCCEEEECCCCC--------------------------CEEEEEECCCEEEEEEECCC-------
T ss_conf ----30346871677763000016679--------------------------99999927982999751254-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEE
Q ss_conf 21122235699999999999999931104899971299985799799999539839999889994589980799884999
Q 000268 509 RWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVL 588 (1757)
Q Consensus 509 ~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LvSGs~DG~I~IWDl~tgkli~tL~gH~~~VtsI 588 (1757)
.....+..+...+.++.|+|++..+...... ... ..
T Consensus 176 ----------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---------------------~~~-~~ 211 (317)
T d1vyhc1 176 ----------------------ECKAELREHRHVVECISWAPESSYSSISEAT---------------------GSE-TK 211 (317)
T ss_dssp ----------------------CEEEEECCCSSCEEEEEECCSCGGGGGGGCC---------------------SCC---
T ss_pred ----------------------EEEEEEECCCCCCEEEEEEECCCCCEEECCC---------------------CCE-EE
T ss_conf ----------------------0347882477873379986325641110345---------------------630-34
Q ss_pred EEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCEE
Q ss_conf 99039994999995899299996899922899860675257999947999999995797099999899831135432112
Q 000268 589 DVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQF 668 (1757)
Q Consensus 589 afSPdd~~lLaSgs~DG~IrIWDi~tg~~i~~l~~~~~~ItslafSPDG~~LAsgs~DG~I~IWdl~sGe~~~~~~~~~~ 668 (1757)
.+.. .+.++++++.|+.|++|++.+++++..+..|...|.+++|+|++++|++++.||.|++|++.+++.+..+
T Consensus 212 ~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----- 285 (317)
T d1vyhc1 212 KSGK-PGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL----- 285 (317)
T ss_dssp ------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE-----
T ss_pred EECC-CCCEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE-----
T ss_conf 3025-8861475169978999888999688999688998799998799999999979894999999999199999-----
Q ss_pred ECCCCCCEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCEEEEEECCCCCCC
Q ss_conf 21798507881478633123211467688787565789888999520010100166331698789984999618998873
Q 000268 669 FLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQG 748 (1757)
Q Consensus 669 fs~D~r~Li~d~~g~vlD~~tql~p~l~~l~~~L~D~~~~p~p~~~q~l~~~r~~g~~~iafSPDG~~LAvg~d~s~~~~ 748 (1757)
.+|...+.+++|+|+|.+||++ +.++.
T Consensus 286 --------------------------------------------------~~h~~~V~~~~~s~~~~~l~s~---s~Dg~ 312 (317)
T d1vyhc1 286 --------------------------------------------------NAHEHFVTSLDFHKTAPYVVTG---SVDQT 312 (317)
T ss_dssp --------------------------------------------------ECCSSCEEEEEECSSSSCEEEE---ETTSE
T ss_pred --------------------------------------------------CCCCCCEEEEEECCCCCEEEEE---ECCCE
T ss_conf --------------------------------------------------2899988999994999999999---28994
Q ss_pred EEEEC
Q ss_conf 68410
Q 000268 749 YQLQP 753 (1757)
Q Consensus 749 v~l~~ 753 (1757)
+++|+
T Consensus 313 i~iWd 317 (317)
T d1vyhc1 313 VKVWE 317 (317)
T ss_dssp EEEEC
T ss_pred EEEEC
T ss_conf 99829
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.7e-36 Score=259.42 Aligned_cols=351 Identities=11% Similarity=0.108 Sum_probs=238.1
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC--CEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECCC
Q ss_conf 78985999995799999998489669999789997--0588417788559999527999507999992899199994678
Q 000268 284 HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL--PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY 361 (1757)
Q Consensus 284 Hs~~VtsIafSPDg~lLASgS~DGtIrIWDl~tg~--~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~t 361 (1757)
...+|+|++|+|++++||+|+.|+.|+||++.+++ .+..+.+|.+.|++++|+|+++ +|++++.|++|++|++..
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~---~l~s~s~D~~i~vWd~~~ 82 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN---RIVTCGTDRNAYVWTLKG 82 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTT---EEEEEETTSCEEEEEEET
T ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCC---EEEEEECCCEEEEEEECC
T ss_conf 99883899998999999999488989999888997899999558899888999979999---999997999399986203
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECC
Q ss_conf 97655252379996324888888888999996438999877998899950895099963899999899999840233037
Q 000268 362 SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG 441 (1757)
Q Consensus 362 g~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sIafSpdG~~LasGs~DG~IrIWDi~t~~~~~s~~~~~~i~~l~g 441 (1757)
+.....+.. ..+...+.+++|+|+++.|++++.++.|++|++..... ..........
T Consensus 83 ~~~~~~~~~------------------~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~-----~~~~~~~~~~ 139 (371)
T d1k8kc_ 83 RTWKPTLVI------------------LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND-----WWVCKHIKKP 139 (371)
T ss_dssp TEEEEEEEC------------------CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT-----EEEEEEECTT
T ss_pred CCCCCCCCC------------------CCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCC-----CCCCCCCCCC
T ss_conf 321100122------------------32211000111111121100000257630254420334-----3311100101
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 78880079982676223333456887888875545555787089981899099992788888852222112223569999
Q 000268 442 HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPP 521 (1757)
Q Consensus 442 H~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~ 521 (1757)
|...|.+++|+|++ ..|++++.||++++|+.........
T Consensus 140 ~~~~v~~v~~~p~~--------------------------~~l~s~s~D~~v~v~~~~~~~~~~~--------------- 178 (371)
T d1k8kc_ 140 IRSTVLSLDWHPNS--------------------------VLLAAGSCDFKCRIFSAYIKEVEER--------------- 178 (371)
T ss_dssp CCSCEEEEEECTTS--------------------------SEEEEEETTSCEEEEECCCTTTSCC---------------
T ss_pred CCCCCCCCCCCCCC--------------------------CCEECCCCCCEEEEEEECCCCCCCC---------------
T ss_conf 11222111111111--------------------------1100013476799984015764310---------------
Q ss_pred CCCCCCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEE
Q ss_conf 99999999999311048999712999857997999995398399998899945899807998849999903999499999
Q 000268 522 PMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 601 (1757)
Q Consensus 522 ~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LvSGs~DG~I~IWDl~tgkli~tL~gH~~~VtsIafSPdd~~lLaSg 601 (1757)
. ...+.+ .....+.++....+|...|.+++|+| ++.+++++
T Consensus 179 ----------~--------------~~~~~~--------------~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~ 219 (371)
T d1k8kc_ 179 ----------P--------------APTPWG--------------SKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWV 219 (371)
T ss_dssp ----------C--------------CCBTTB--------------SCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEE
T ss_pred ----------C--------------CCCCCC--------------CCCCCEEEEEECCCCCCCEEEEEEEC-CCCCCCCC
T ss_conf ----------0--------------122111--------------11111011244047667478987512-33210000
Q ss_pred ECCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEE--ECCCCCCCCCCCCCEEECCCCCCEEEC
Q ss_conf 589929999689992289986067525799994799999999579709999--989983113543211221798507881
Q 000268 602 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYIL--NTGQGESQKDAKYDQFFLGDYRPLVQD 679 (1757)
Q Consensus 602 s~DG~IrIWDi~tg~~i~~l~~~~~~ItslafSPDG~~LAsgs~DG~I~IW--dl~sGe~~~~~~~~~~fs~D~r~Li~d 679 (1757)
+.|+.|++||+..+..+..+..+..+|.+++|+||+++|++|. |+.+.+| +...+........+.........+ .
T Consensus 220 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 296 (371)
T d1k8kc_ 220 SHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGL--T 296 (371)
T ss_dssp ETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC----------C
T ss_pred CCCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCEEEEEC-CCCEEEEEEECCCCEEEEEEEECCCCCCCCCCC--C
T ss_conf 1478605886410121000001466520365469997999981-992678776089862887202067654212462--2
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCC----CEEEEEECCCCCCCEEEECCC
Q ss_conf 4786331232114676887875657898889995200101001663316987899----849996189988736841069
Q 000268 680 TYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSS----LKLAVGPDFSLDQGYQLQPLA 755 (1757)
Q Consensus 680 ~~g~vlD~~tql~p~l~~l~~~L~D~~~~p~p~~~q~l~~~r~~g~~~iafSPDG----~~LAvg~d~s~~~~v~l~~l~ 755 (1757)
..........+. .. .. .......+...|...+..+++.|.+ ..+|++ +.|+.+.+|++.
T Consensus 297 ~~~~~~~~~~~~---------~~---~~--~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~---g~Dg~v~iW~~~ 359 (371)
T d1k8kc_ 297 ARERFQNLDKKA---------SS---EG--SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTT---GMDGGMSIWDVR 359 (371)
T ss_dssp HHHHHHHCCCCC-----------------------CCCSSSSSSCEEEEEEEESTTTSCSEEEEE---ETTSEEEEEEHH
T ss_pred CEEEEECCCCEE---------EE---EC--CCCCCCEECCCCCCCEEEEEEECCCCCCEEEEEEE---CCCCEEEEEECC
T ss_conf 001685065205---------87---12--45566141255569889999948998656799999---189939999698
Q ss_pred CCCCC
Q ss_conf 85632
Q 000268 756 DLDVM 760 (1757)
Q Consensus 756 ~~~~l 760 (1757)
+.+..
T Consensus 360 ~~~~~ 364 (371)
T d1k8kc_ 360 SLESA 364 (371)
T ss_dssp HHHHH
T ss_pred CCHHH
T ss_conf 68465
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.7e-33 Score=240.28 Aligned_cols=283 Identities=12% Similarity=0.130 Sum_probs=149.0
Q ss_pred CEEEEEECCCCCEEEEECCCC-EEEEEECCCC--EEEEEEECCC-CCEEEEEECC--CCCEEEEEECCCEEEEEECCCCC
Q ss_conf 789999979999999981872-6999926787--0889980678-9859999957--99999998489669999789997
Q 000268 245 AVYCAIFDRSGRYVITGSDDR-LVKIWSMETA--YCLASCRGHE-GDITDLAVSS--NNALVASASNDCIIRVWRLPDGL 318 (1757)
Q Consensus 245 ~V~sIaFSPDG~~LATGS~DG-tIkIWDi~tg--~~l~tL~gHs-~~VtsIafSP--Dg~lLASgS~DGtIrIWDl~tg~ 318 (1757)
.+++++|+|+|+.||.++.+. .|+.|+.... ..+..+.+|. ..|++++|+| ++.+|++|+.||+|+||++..+.
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~ 98 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK 98 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred CEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEECCCC
T ss_conf 84799998997999999699879999768888765028990789998899998117999799999489977985405886
Q ss_pred CEE--------EECCCCCCEEEEEECCCCCCEEEEEEEE--CCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 058--------8417788559999527999507999992--899199994678976552523799963248888888889
Q 000268 319 PIS--------VLRGHTAAVTAIAFSPRPGSVYQLLSSS--DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 388 (1757)
Q Consensus 319 ~i~--------~l~gH~~~VtsIafSPdg~~~~~LvSgs--~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~ 388 (1757)
... .+..|.+.|.+++|++++. +|++++ .++.+.+|+..++..+..+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 155 (325)
T d1pgua1 99 ESNSVEVNVKSEFQVLAGPISDISWDFEGR---RLCVVGEGRDNFGVFISWDSGNSLGEV-------------------- 155 (325)
T ss_dssp GGTEEEEEEEEEEECCSSCEEEEEECTTSS---EEEEEECCSSCSEEEEETTTCCEEEEC--------------------
T ss_pred CEEEEECCCCCCCCCCCCCEEEEEECCCCC---CCCEEECCCCCEEEEEEECCCCCCEEE--------------------
T ss_conf 215651002541136567377999899988---220100124404788850233110012--------------------
Q ss_pred CCCCCCEEEEEECCCCCE-EEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 999964389998779988-9995089509996389999989999984023303778880079982676223333456887
Q 000268 389 GPQSHQIFCCAFNANGTV-FVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSK 467 (1757)
Q Consensus 389 ~~~~~~V~sIafSpdG~~-LasGs~DG~IrIWDi~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~ 467 (1757)
..|...+.+++|+|++.. +++++.|+.+++|+.
T Consensus 156 ~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~---------------------------------------------- 189 (325)
T d1pgua1 156 SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQG---------------------------------------------- 189 (325)
T ss_dssp CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEET----------------------------------------------
T ss_pred EECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC----------------------------------------------
T ss_conf 0012343211112343206888621112211112----------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEE
Q ss_conf 88887554555578708998189909999278888885222211222356999999999999999311048999712999
Q 000268 468 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 547 (1757)
Q Consensus 468 ~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIa 547 (1757)
...+... .......+...|.+++
T Consensus 190 -------------------------------~~~~~~~--------------------------~~~~~~~~~~~v~~v~ 212 (325)
T d1pgua1 190 -------------------------------PPFKFSA--------------------------SDRTHHKQGSFVRDVE 212 (325)
T ss_dssp -------------------------------TTBEEEE--------------------------EECSSSCTTCCEEEEE
T ss_pred -------------------------------CCCCCCE--------------------------ECCCCCCCCCCCEEEE
T ss_conf -------------------------------2110000--------------------------0000157777527763
Q ss_pred ECCC-CCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEE---CCCCCEEEEEECCCCEEEEECCCCCEEEEEEE
Q ss_conf 8579-9799999539839999889994589980799884999990---39994999995899299996899922899860
Q 000268 548 WSLD-NRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVH---PFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEI 623 (1757)
Q Consensus 548 fSPD-G~~LvSGs~DG~I~IWDl~tgkli~tL~gH~~~VtsIafS---Pdd~~lLaSgs~DG~IrIWDi~tg~~i~~l~~ 623 (1757)
|+|+ +.+|++++.|+.|++||+.+++++..+.+|...+..+.|+ | ++.+|++++.|+.|+|||+.+++++..+..
T Consensus 213 ~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~-dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~ 291 (325)
T d1pgua1 213 FSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTL 291 (325)
T ss_dssp ECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred ECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECC-CCCEEEEEECCCEEEEEECCCCCEEEEEEE
T ss_conf 0345310000112332101343001222111111111111100000036-899999995899399999999978899995
Q ss_pred CCCC--EEEEEECCC-CCEEEEEECCCEEEEEEC
Q ss_conf 6752--579999479-999999957970999998
Q 000268 624 SRFR--LVDGKFSPD-GASIILSDDVGQLYILNT 654 (1757)
Q Consensus 624 ~~~~--ItslafSPD-G~~LAsgs~DG~I~IWdl 654 (1757)
+... +..++|.+. +.+|++++.||.|++|++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 292 DKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp CTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred CCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEC
T ss_conf 4874067699999889999999979999999979
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.9e-33 Score=238.66 Aligned_cols=316 Identities=12% Similarity=0.049 Sum_probs=202.1
Q ss_pred CEEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEE---EEECCCCCEEEEEECCCC-CEEEEEECCCE
Q ss_conf 22689981679878999997999999998187269999267870889---980678985999995799-99999848966
Q 000268 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLA---SCRGHEGDITDLAVSSNN-ALVASASNDCI 308 (1757)
Q Consensus 233 ~k~i~tL~GH~~~V~sIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~---tL~gHs~~VtsIafSPDg-~lLASgS~DGt 308 (1757)
|+.++.+++|.+.|++|+|+|++++||+|+.||+|+|||+.++.... ...+|.+.|.+++|++++ .+|++|+.|+.
T Consensus 1 ~~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~ 80 (342)
T d1yfqa_ 1 MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE 80 (342)
T ss_dssp CEEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred CCEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEECCCCCC
T ss_conf 97597688998978889995899999999799929999756998636898855899988999995899978998126531
Q ss_pred EEEEECCCCCCEEEECCCCCCE-EEEEECCCCCCEEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 9999789997058841778855-999952799950799999289919999467897655252379996324888888888
Q 000268 309 IRVWRLPDGLPISVLRGHTAAV-TAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSS 387 (1757)
Q Consensus 309 IrIWDl~tg~~i~~l~gH~~~V-tsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~ 387 (1757)
|++|++..+........+...+ ....+.++.. .+++++.++++++||++..............
T Consensus 81 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~------------- 144 (342)
T d1yfqa_ 81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDD---KLIAASWDGLIEVIDPRNYGDGVIAVKNLNS------------- 144 (342)
T ss_dssp EEEECSSSSSSEEECBSCCCCSCEEEEEEETTT---EEEEEETTSEEEEECHHHHTTBCEEEEESCS-------------
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCEEECCCCCCCEEEECCCCC-------------
T ss_conf 145420443200000111111111111111111---1111012221110202344433023000243-------------
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 99999643899987799889995089509996389999989999984023303778880079982676223333456887
Q 000268 388 AGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSK 467 (1757)
Q Consensus 388 ~~~~~~~V~sIafSpdG~~LasGs~DG~IrIWDi~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~ 467 (1757)
.........+.+.+.+..+++++.|+.|++|++..... .........+...+.+..+.+..
T Consensus 145 -~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~------------ 205 (342)
T d1yfqa_ 145 -NNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED------DNGTIEESGLKYQIRDVALLPKE------------ 205 (342)
T ss_dssp -SSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTT------CCCEEEECSCSSCEEEEEECSGG------------
T ss_pred -CCCCCEEEEEEEECCCCCEEEECCCCCEEEEECCCCCC------CCEEEEECCCCCCEEEEEEECCC------------
T ss_conf -00120000010001687024651798478876056763------41112102542210146763699------------
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEE
Q ss_conf 88887554555578708998189909999278888885222211222356999999999999999311048999712999
Q 000268 468 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 547 (1757)
Q Consensus 468 ~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIa 547 (1757)
...+++++.||.+.+|+................. ..........|...+++++
T Consensus 206 -------------~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~v~~l~ 258 (342)
T d1yfqa_ 206 -------------QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR--------------CHRLNLKDTNLAYPVNSIE 258 (342)
T ss_dssp -------------GCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE--------------CCCCCTTCCSSCCCEEEEE
T ss_pred -------------CCEEEEECCCCEEEEEEECCCCCEEECCCCCEEE--------------EEEECCCCCCCCCCCEEEE
T ss_conf -------------9878865489959999805986401112351256--------------5553147776235431599
Q ss_pred ECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf 85799799999539839999889994589980799884999990399949999958992999968
Q 000268 548 WSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1757)
Q Consensus 548 fSPDG~~LvSGs~DG~I~IWDl~tgkli~tL~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDi 612 (1757)
|+|++.+|++|+.||.|++||+.+++.+..+..+ ..+..++|+| ++.++++++.|+.+++|..
T Consensus 259 ~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~-~~~~l~~a~sdd~~~~~~~ 321 (342)
T d1yfqa_ 259 FSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIAC-SDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp ECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEE-CSSEEEEEEECTHHHHCSS
T ss_pred ECCCCCEEEEECCCCEEEEEECCCCCEEEEECCC-CCCEEEEEEE-CCCEEEEEECCCCEEEEEE
T ss_conf 6698447999879998999999989498870589-9987999994-7999999991992788301
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.5e-33 Score=238.13 Aligned_cols=260 Identities=16% Similarity=0.248 Sum_probs=198.7
Q ss_pred CCCEEEEEECCCC-CCEEEEEECC--CCCEEEEECCCCEEEEEECCCCEE--------EEEEECCCCCEEEEEECCCCCE
Q ss_conf 2322689981679-8789999979--999999981872699992678708--------8998067898599999579999
Q 000268 231 QKMQNIKRVRGHR-NAVYCAIFDR--SGRYVITGSDDRLVKIWSMETAYC--------LASCRGHEGDITDLAVSSNNAL 299 (1757)
Q Consensus 231 ~~~k~i~tL~GH~-~~V~sIaFSP--DG~~LATGS~DGtIkIWDi~tg~~--------l~tL~gHs~~VtsIafSPDg~l 299 (1757)
.+...+..+.||. ..|++++|+| +|.+||+|+.||+|+|||+..+.. ...+..|.+.|.+++|++++.+
T Consensus 50 ~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 129 (325)
T d1pgua1 50 SKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRR 129 (325)
T ss_dssp CSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSE
T ss_pred CCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCC
T ss_conf 87650289907899988999981179997999994899779854058862156510025411365673779998999882
Q ss_pred EEEEEC--CCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCC
Q ss_conf 999848--966999978999705884177885599995279995079999928991999946789765525237999632
Q 000268 300 VASASN--DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAV 377 (1757)
Q Consensus 300 LASgS~--DGtIrIWDl~tg~~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~ 377 (1757)
|++++. ++.+.+|++.+++.+..+.+|...|.+++|+|++. ..+++++.|+.|++|++...+.......
T Consensus 130 l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~~~~~~~d~~v~~~d~~~~~~~~~~~~------- 200 (325)
T d1pgua1 130 LCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRP--MRSMTVGDDGSVVFYQGPPFKFSASDRT------- 200 (325)
T ss_dssp EEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSS--CEEEEEETTTEEEEEETTTBEEEEEECS-------
T ss_pred CCEEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCC--CEEEEEECCCCCCCCCCCCCCCCEECCC-------
T ss_conf 2010012440478885023311001200123432111123432--0688862111221111221100000000-------
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCC-CCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCC
Q ss_conf 48888888889999964389998779-98899950895099963899999899999840233037788800799826762
Q 000268 378 AGRNMAPSSSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAV 456 (1757)
Q Consensus 378 ~g~~~~~~~~~~~~~~~V~sIafSpd-G~~LasGs~DG~IrIWDi~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~ 456 (1757)
...+...|.+++|+|+ +.+|++++.|+.|++||+.+ ...+..+.+|...+..+
T Consensus 201 ----------~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~---------~~~~~~l~~~~~~v~~~------- 254 (325)
T d1pgua1 201 ----------HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS---------GEFLKYIEDDQEPVQGG------- 254 (325)
T ss_dssp ----------SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT---------CCEEEECCBTTBCCCSC-------
T ss_pred ----------CCCCCCCCEEEEECCCCCEECCCCCCCCCEEEEEECC---------CCCCCCCCCCCCCCCCC-------
T ss_conf ----------1577775277630345310000112332101343001---------22211111111111110-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 23333456887888875545555787089981899099992788888852222112223569999999999999993110
Q 000268 457 ASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI 536 (1757)
Q Consensus 457 ~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l 536 (1757)
T Consensus 255 -------------------------------------------------------------------------------- 254 (325)
T d1pgua1 255 -------------------------------------------------------------------------------- 254 (325)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCC--EEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf 489997129998579979999953983999988999458998079988--4999990399949999958992999968
Q 000268 537 LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTES--TYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1757)
Q Consensus 537 ~~h~~~VtsIafSPDG~~LvSGs~DG~I~IWDl~tgkli~tL~gH~~~--VtsIafSPdd~~lLaSgs~DG~IrIWDi 612 (1757)
+.+++| +++++|++++.|+.|+|||+.+++++..+..|... +..+++.+.+..++++++.||.|+|||+
T Consensus 255 ------~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 255 ------IFALSW-LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp ------EEEEEE-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred ------EEEEEC-CCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEC
T ss_conf ------000003-68999999958993999999999788999954874067699999889999999979999999979
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-31 Score=225.45 Aligned_cols=280 Identities=21% Similarity=0.400 Sum_probs=189.9
Q ss_pred CEEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 22689981679878999997999999998187269999267870889980678985999995799999998489669999
Q 000268 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1757)
Q Consensus 233 ~k~i~tL~GH~~~V~sIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~gHs~~VtsIafSPDg~lLASgS~DGtIrIW 312 (1757)
++.++.+.+|...|+|++| +|++||||+.||+|+|||+.+++++.++.+|.+.|++++| ++++|++|+.|+.|++|
T Consensus 5 ~~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~ 80 (293)
T d1p22a2 5 LQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVW 80 (293)
T ss_dssp CCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred EEEEECCCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEC--CCCEEECCCCCCCCCCC
T ss_conf 7898432899998899987--6999999928993999999999199999267787763423--63002100111011000
Q ss_pred ECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 78999705884177885599995279995079999928991999946789765525237999632488888888899999
Q 000268 313 RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1757)
Q Consensus 313 Dl~tg~~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~ 392 (1757)
++..+........+........ +... .++++..++.+.+|+............ ...+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~ 138 (293)
T d1p22a2 81 DVNTGEMLNTLIHHCEAVLHLR--FNNG---MMVTCSKDRSIAVWDMASPTDITLRRV-----------------LVGHR 138 (293)
T ss_dssp ESSSCCEEEEECCCCSCEEEEE--CCTT---EEEEEETTSCEEEEECSSSSCCEEEEE-----------------ECCCS
T ss_pred CCCCCCCCCCCCCCCCCCCCCC--CCCC---CEEECCCCCCEEEEECCCCCCCCCCCC-----------------CCCCC
T ss_conf 0024641001111110000111--1110---000013566306861344544421210-----------------00113
Q ss_pred CCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 64389998779988999508950999638999998999998402330377888007998267622333345688788887
Q 000268 393 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 472 (1757)
Q Consensus 393 ~~V~sIafSpdG~~LasGs~DG~IrIWDi~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~ 472 (1757)
..+.++.+. ...+++++.|+.|++|++.+ ...+..+.++...+..+.+.+
T Consensus 139 ~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~---------~~~~~~~~~~~~~v~~~~~~~------------------- 188 (293)
T d1p22a2 139 AAVNVVDFD--DKYIVSASGDRTIKVWNTST---------CEFVRTLNGHKRGIACLQYRD------------------- 188 (293)
T ss_dssp SCEEEEEEE--TTEEEEEETTSEEEEEETTT---------CCEEEEEECCSSCEEEEEEET-------------------
T ss_pred CCCCCCEEC--CCCCCCCCCCCCEEEECCCC---------CCEEEEECCCCCCCCCCCCCC-------------------
T ss_conf 543110000--02201106998604100788---------838899715544532216898-------------------
Q ss_pred CCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCC
Q ss_conf 55455557870899818990999927888888522221122235699999999999999931104899971299985799
Q 000268 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN 552 (1757)
Q Consensus 473 ~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG 552 (1757)
..+++++.||.|++||+.+.. .......+...+. .+++++
T Consensus 189 ---------~~l~~~~~dg~i~i~d~~~~~-----------------------------~~~~~~~~~~~v~--~~~~~~ 228 (293)
T d1p22a2 189 ---------RLVVSGSSDNTIRLWDIECGA-----------------------------CLRVLEGHEELVR--CIRFDN 228 (293)
T ss_dssp ---------TEEEEEETTSCEEEEETTTCC-----------------------------EEEEECCCSSCEE--EEECCS
T ss_pred ---------CEEEEECCCCEEEEEECCCCE-----------------------------EEEEECCCCEEEE--ECCCCC
T ss_conf ---------758876589989998665561-----------------------------4665214310000--014541
Q ss_pred CEEEEEECCCEEEEEECCC---------CCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 7999995398399998899---------9458998079988499999039994999995899299996
Q 000268 553 RFVLAAIMDCRICVWNAAD---------GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1757)
Q Consensus 553 ~~LvSGs~DG~I~IWDl~t---------gkli~tL~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWD 611 (1757)
.+|++|+.||.|++||+.. ..++..+.+|.+.|++++|++ .+|++++.||.|+|||
T Consensus 229 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~---~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 229 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE---FQIVSSSHDDTILIWD 293 (293)
T ss_dssp SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECS---SCEEECCSSSEEEEEC
T ss_pred EEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEECC---CEEEEEECCCEEEEEC
T ss_conf 0799986799799998888864445677545578458899889999719---9999992299899959
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.8e-32 Score=231.05 Aligned_cols=304 Identities=15% Similarity=0.144 Sum_probs=179.9
Q ss_pred EEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCE------EEEEEECCCCCEEEEEEC---C----CCCEEE
Q ss_conf 689981679878999997999999998187269999267870------889980678985999995---7----999999
Q 000268 235 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY------CLASCRGHEGDITDLAVS---S----NNALVA 301 (1757)
Q Consensus 235 ~i~tL~GH~~~V~sIaFSPDG~~LATGS~DGtIkIWDi~tg~------~l~tL~gHs~~VtsIafS---P----Dg~lLA 301 (1757)
.....+||.+.|+++++++ ++|+|++.|++|+||+..+.. .......|...+..+... + +..+++
T Consensus 6 ~~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (393)
T d1sq9a_ 6 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 83 (393)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred EEECCCCCCCCCEEEEEEC--CEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCEEE
T ss_conf 4520876367127999969--99999979996998789878877654046765420477167666750015799876899
Q ss_pred EEECCCEEEEEECCCCCCEEEE----------CCCCCCEEEEEECCCCC--CEEEEEEEECCCCEEEEECCCCCCCCEEE
Q ss_conf 9848966999978999705884----------17788559999527999--50799999289919999467897655252
Q 000268 302 SASNDCIIRVWRLPDGLPISVL----------RGHTAAVTAIAFSPRPG--SVYQLLSSSDDGTCRIWDARYSQFSPRIY 369 (1757)
Q Consensus 302 SgS~DGtIrIWDl~tg~~i~~l----------~gH~~~VtsIafSPdg~--~~~~LvSgs~DGtIrIWDl~tg~~~~~i~ 369 (1757)
+++.||.|++|++........+ ..+...++.++|.++.. ...++++++.||++++|++..........
T Consensus 84 s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~ 163 (393)
T d1sq9a_ 84 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 163 (393)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred EEECCCCEEEEECCCCCCEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCEE
T ss_conf 99489919999822898205651245632431157896689998447886542179998389819998740477534102
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEE
Q ss_conf 37999632488888888899999643899987799889995089509996389999989999984023303778880079
Q 000268 370 IPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYV 449 (1757)
Q Consensus 370 l~~~~~~~~g~~~~~~~~~~~~~~~V~sIafSpdG~~LasGs~DG~IrIWDi~t~~~~~s~~~~~~i~~l~gH~~~V~sI 449 (1757)
.. +.. . . ..+. ........+...+.++
T Consensus 164 ~~-------------------~~~----------~-~---------~~~~--------------~~~~~~~~~~~~~~~v 190 (393)
T d1sq9a_ 164 TL-------------------NWS----------P-T---------LELQ--------------GTVESPMTPSQFATSV 190 (393)
T ss_dssp TT-------------------CCC----------C-E---------EEEE--------------EEECCSSSSCCCCCEE
T ss_pred EE-------------------EEC----------C-C---------EECC--------------CCEECCCCCCCCEEEE
T ss_conf 33-------------------103----------2-0---------0014--------------5100025789867899
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98267622333345688788887554555578708998189909999278888885222211222356999999999999
Q 000268 450 QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPR 529 (1757)
Q Consensus 450 afSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~ 529 (1757)
+|+|++ .|++|+.||+|++||+.+++....
T Consensus 191 ~~s~dg---------------------------~lasgs~Dg~i~iwd~~~~~~~~~----------------------- 220 (393)
T d1sq9a_ 191 DISERG---------------------------LIATGFNNGTVQISELSTLRPLYN----------------------- 220 (393)
T ss_dssp EECTTS---------------------------EEEEECTTSEEEEEETTTTEEEEE-----------------------
T ss_pred EECCCC---------------------------EEEEEECCCCEEEEEECCCCCCCC-----------------------
T ss_conf 978999---------------------------899993898299986023321100-----------------------
Q ss_pred CCCCEEECCCCCCEEEEEECCCCCEEEEEECCC---EEEEEECCCCCEEEEEE-------------CCCCCEEEEEEECC
Q ss_conf 999311048999712999857997999995398---39999889994589980-------------79988499999039
Q 000268 530 GGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC---RICVWNAADGSLVHSLT-------------GHTESTYVLDVHPF 593 (1757)
Q Consensus 530 ~~~~~~l~~h~~~VtsIafSPDG~~LvSGs~DG---~I~IWDl~tgkli~tL~-------------gH~~~VtsIafSPd 593 (1757)
......+.+|...|++++|+|+|++|++|+.|+ .|++||+.+++++..+. +|.+.|++++|+|
T Consensus 221 ~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp- 299 (393)
T d1sq9a_ 221 FESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND- 299 (393)
T ss_dssp EECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-
T ss_pred CCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCC-
T ss_conf 0011111242563877004665320112428988421001035321344431156666431023202358666001389-
Q ss_pred CCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEE----EEEECCCCCEEEEEE
Q ss_conf 994999995899299996899922899860675257----999947999999995
Q 000268 594 NPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLV----DGKFSPDGASIILSD 644 (1757)
Q Consensus 594 d~~lLaSgs~DG~IrIWDi~tg~~i~~l~~~~~~It----slafSPDG~~LAsgs 644 (1757)
++++|++++.|++|+|||+.+++++.++.+|...|. .++|+|++..+++++
T Consensus 300 d~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~ 354 (393)
T d1sq9a_ 300 SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354 (393)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred CCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCEEEECCCCCEEEECC
T ss_conf 8880698779998999999999799999886876137734899999999999831
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=100.00 E-value=7e-33 Score=236.05 Aligned_cols=335 Identities=14% Similarity=0.063 Sum_probs=244.4
Q ss_pred EEEEECC-CCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECC--CEEEEEECCCCCCEEEE
Q ss_conf 9999979-99999998187269999267870889980678985999995799999998489--66999978999705884
Q 000268 247 YCAIFDR-SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND--CIIRVWRLPDGLPISVL 323 (1757)
Q Consensus 247 ~sIaFSP-DG~~LATGS~DGtIkIWDi~tg~~l~tL~gHs~~VtsIafSPDg~lLASgS~D--GtIrIWDl~tg~~i~~l 323 (1757)
+.-.||| ||+++|+++. |.|++|++.++..++. +|...|.+++|+|||++|++++.+ ..|++|++.++... .+
T Consensus 6 ~~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~ 81 (360)
T d1k32a3 6 FAEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KF 81 (360)
T ss_dssp GEEEEEECGGGCEEEEET-TEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-EC
T ss_pred HCCCCCCCCCCEEEEEEC-CEEEEEECCCCCEEEC--CCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEE-EE
T ss_conf 005146889999999989-9699998999948991--6999888899989999999999289989999989999488-75
Q ss_pred CCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 17788559999527999507999992899199994678976552523799963248888888889999964389998779
Q 000268 324 RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN 403 (1757)
Q Consensus 324 ~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sIafSpd 403 (1757)
..|...|.+++|+|+++ +|++++.++.+.+|++.++.....+. .+...+.+++|+|+
T Consensus 82 ~~~~~~v~~~~~spdg~---~l~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~spd 138 (360)
T d1k32a3 82 EENLGNVFAMGVDRNGK---FAVVANDRFEIMTVDLETGKPTVIER--------------------SREAMITDFTISDN 138 (360)
T ss_dssp CCCCCSEEEEEECTTSS---EEEEEETTSEEEEEETTTCCEEEEEE--------------------CSSSCCCCEEECTT
T ss_pred ECCCCEEEEEEECCCCC---CCCEECCCCCCCCCCCCCCCEEEEEE--------------------CCCCCCCCHHHCCC
T ss_conf 08971277412114543---21000111110000012221000000--------------------13552023012132
Q ss_pred CCEEEEEE----------CCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98899950----------89509996389999989999984023303778880079982676223333456887888875
Q 000268 404 GTVFVTGS----------SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1757)
Q Consensus 404 G~~LasGs----------~DG~IrIWDi~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~ 473 (1757)
|++|+.+. .++.+++|++.++ ....+..+...+..+.|+|++
T Consensus 139 g~~la~~~~~~~~~~~~~~~~~~~v~d~~~~----------~~~~~~~~~~~~~~~~~spdg------------------ 190 (360)
T d1k32a3 139 SRFIAYGFPLKHGETDGYVMQAIHVYDMEGR----------KIFAATTENSHDYAPAFDADS------------------ 190 (360)
T ss_dssp SCEEEEEEEECSSTTCSCCEEEEEEEETTTT----------EEEECSCSSSBEEEEEECTTS------------------
T ss_pred EEEEEEECCCCCCCEEECCCCCEEEECCCCC----------CEEEECCCCCCCCCCCCCCCC------------------
T ss_conf 2566521233121100025654266304557----------135303543221100125779------------------
Q ss_pred CCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCC
Q ss_conf 54555578708998189909999278888885222211222356999999999999999311048999712999857997
Q 000268 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 553 (1757)
Q Consensus 474 ~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~ 553 (1757)
..|++++.++.+.+|+......... .......+..+...+..+.|++++.
T Consensus 191 --------~~l~~~s~~~~~~~~d~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~s~~~~ 240 (360)
T d1k32a3 191 --------KNLYYLSYRSLDPSPDRVVLNFSFE----------------------VVSKPFVIPLIPGSPNPTKLVPRSM 240 (360)
T ss_dssp --------CEEEEEESCCCCCEECSSSSCEECC----------------------SCBEEEEEESSTTCCCGGGCCCGGG
T ss_pred --------CEEEEEECCCCEECCCCCCCCEEEC----------------------CCCCEEEEECCCCCCCCCEECCCCC
T ss_conf --------9999995998557533354402320----------------------3641179852469601206877767
Q ss_pred EEEEEECCC-----EEEEEECCCCCEEEEEECCCCCEEEEEEECCCC--CEEEEEECCCCEEEEECCCCCEEEEEEECCC
Q ss_conf 999995398-----399998899945899807998849999903999--4999995899299996899922899860675
Q 000268 554 FVLAAIMDC-----RICVWNAADGSLVHSLTGHTESTYVLDVHPFNP--RIAMSAGYDGKTIVWDIWEGIPIRIYEISRF 626 (1757)
Q Consensus 554 ~LvSGs~DG-----~I~IWDl~tgkli~tL~gH~~~VtsIafSPdd~--~lLaSgs~DG~IrIWDi~tg~~i~~l~~~~~ 626 (1757)
.++++..+. .+..++...+.. ..+..+.+.+..+.+.+.+. .++++++.++.|++||+.+++... +..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~----~~~ 315 (360)
T d1k32a3 241 TSEAGEYDLNDMYKRSSPINVDPGDY-RMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE----VKN 315 (360)
T ss_dssp SCCCCCCCCTTGGGGCEECSCCCBCE-EEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE----EEE
T ss_pred CCCCCCEEECCCCCCEEECCCCCCCE-EEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEE----ECC
T ss_conf 15531136526654001012476752-6754138985699997359970699964899879999799974988----648
Q ss_pred CEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCEEECCCCCCEE
Q ss_conf 257999947999999995797099999899831135432112217985078
Q 000268 627 RLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLV 677 (1757)
Q Consensus 627 ~ItslafSPDG~~LAsgs~DG~I~IWdl~sGe~~~~~~~~~~fs~D~r~Li 677 (1757)
.|.+++|||||++|++++.||.|++|++..++... ....|++||+
T Consensus 316 ~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~------~~~~d~~~~~ 360 (360)
T d1k32a3 316 NLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDER------TVETDKRPLV 360 (360)
T ss_dssp EEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCE------ECCCCSSCEE
T ss_pred CCCEEEECCCCCEEEEEECCCEEEEEECCCCCCCE------EEEECCCCCC
T ss_conf 86879999989899999789949999999998545------9984162259
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.3e-31 Score=227.28 Aligned_cols=283 Identities=10% Similarity=0.105 Sum_probs=180.8
Q ss_pred EEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCC------EEEECCCCCCEEEEEE----CCCCCCEEEEEEE
Q ss_conf 99806789859999957999999984896699997899970------5884177885599995----2799950799999
Q 000268 279 ASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLP------ISVLRGHTAAVTAIAF----SPRPGSVYQLLSS 348 (1757)
Q Consensus 279 ~tL~gHs~~VtsIafSPDg~lLASgS~DGtIrIWDl~tg~~------i~~l~gH~~~VtsIaf----SPdg~~~~~LvSg 348 (1757)
...++|.+.|.++++++ ++|++++.|++|+||+..+... ......|...+..+.+ ..++.....++++
T Consensus 8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 85 (393)
T d1sq9a_ 8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 85 (393)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred ECCCCCCCCCEEEEEEC--CEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCEEEEE
T ss_conf 20876367127999969--9999997999699878987887765404676542047716766675001579987689999
Q ss_pred ECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC-----CCEEEEEECCCEEEEECCCC
Q ss_conf 2899199994678976552523799963248888888889999964389998779-----98899950895099963899
Q 000268 349 SDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN-----GTVFVTGSSDTLARVWNACK 423 (1757)
Q Consensus 349 s~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sIafSpd-----G~~LasGs~DG~IrIWDi~t 423 (1757)
+.||.|++|++............... ......+...+..++|.++ +.++++++.||.+++|++..
T Consensus 86 ~~dg~v~~w~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~ 155 (393)
T d1sq9a_ 86 SFSGDLLFYRITREDETKKVIFEKLD----------LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 155 (393)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEEC----------CSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred ECCCCEEEEECCCCCCEEEEECCCCC----------EEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEEC
T ss_conf 48991999982289820565124563----------24311578966899984478865421799983898199987404
Q ss_pred CCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCC
Q ss_conf 99989999984023303778880079982676223333456887888875545555787089981899099992788888
Q 000268 424 PNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRS 503 (1757)
Q Consensus 424 ~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~ 503 (1757)
.. ........+...... +.
T Consensus 156 ~~--------~~~~~~~~~~~~~~~----------------------------------------------~~------- 174 (393)
T d1sq9a_ 156 FA--------DESNSLTLNWSPTLE----------------------------------------------LQ------- 174 (393)
T ss_dssp SS--------SHHHHTTTCCCCEEE----------------------------------------------EE-------
T ss_pred CC--------CCCCEEEEEECCCEE----------------------------------------------CC-------
T ss_conf 77--------534102331032000----------------------------------------------14-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE-----
Q ss_conf 852222112223569999999999999993110489997129998579979999953983999988999458998-----
Q 000268 504 HPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL----- 578 (1757)
Q Consensus 504 ~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LvSGs~DG~I~IWDl~tgkli~tL----- 578 (1757)
........+...+++++|+|++ +|++|+.|+.|+|||+.+++++..+
T Consensus 175 ---------------------------~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~ 226 (393)
T d1sq9a_ 175 ---------------------------GTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHS 226 (393)
T ss_dssp ---------------------------EEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC-
T ss_pred ---------------------------CCEECCCCCCCCEEEEEECCCC-EEEEEECCCCEEEEEECCCCCCCCCCCCCC
T ss_conf ---------------------------5100025789867899978999-899993898299986023321100001111
Q ss_pred -ECCCCCEEEEEEECCCCCEEEEEECCCC---EEEEECCCCCEEEEEE-------------ECCCCEEEEEECCCCCEEE
Q ss_conf -0799884999990399949999958992---9999689992289986-------------0675257999947999999
Q 000268 579 -TGHTESTYVLDVHPFNPRIAMSAGYDGK---TIVWDIWEGIPIRIYE-------------ISRFRLVDGKFSPDGASII 641 (1757)
Q Consensus 579 -~gH~~~VtsIafSPdd~~lLaSgs~DG~---IrIWDi~tg~~i~~l~-------------~~~~~ItslafSPDG~~LA 641 (1757)
.+|...|.+++|+| ++++|++|+.|+. |++||+.++.++..+. +|...|++++|+|||++|+
T Consensus 227 l~~h~~~V~~l~~sp-dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~ 305 (393)
T d1sq9a_ 227 MINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC 305 (393)
T ss_dssp --CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEE
T ss_pred CCCCCCEEEECCCCC-CCCEEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEE
T ss_conf 124256387700466-5320112428988421001035321344431156666431023202358666001389888069
Q ss_pred EEECCCEEEEEECCCCCCCCCC
Q ss_conf 9957970999998998311354
Q 000268 642 LSDDVGQLYILNTGQGESQKDA 663 (1757)
Q Consensus 642 sgs~DG~I~IWdl~sGe~~~~~ 663 (1757)
+++.|+.|++|++.+|+++..+
T Consensus 306 S~s~D~~v~vWd~~~g~~~~~l 327 (393)
T d1sq9a_ 306 SAGWDGKLRFWDVKTKERITTL 327 (393)
T ss_dssp EEETTSEEEEEETTTTEEEEEE
T ss_pred EECCCCEEEEEECCCCCEEEEE
T ss_conf 8779998999999999799999
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.4e-31 Score=221.49 Aligned_cols=278 Identities=23% Similarity=0.376 Sum_probs=220.9
Q ss_pred EEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEE
Q ss_conf 88998067898599999579999999848966999978999705884177885599995279995079999928991999
Q 000268 277 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356 (1757)
Q Consensus 277 ~l~tL~gHs~~VtsIafSPDg~lLASgS~DGtIrIWDl~tg~~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrI 356 (1757)
.+.....|...|+|++| ++++||+|+.||+|+|||+.+++++.++.+|.+.|++++|.+ + +|++++.|+.|++
T Consensus 7 ~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~--~---~l~s~s~D~~i~~ 79 (293)
T d1p22a2 7 RIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE--R---VIITGSSDSTVRV 79 (293)
T ss_dssp CEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCS--S---EEEEEETTSCEEE
T ss_pred EEECCCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEECCC--C---EEECCCCCCCCCC
T ss_conf 98432899998899987--699999992899399999999919999926778776342363--0---0210011101100
Q ss_pred EECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCE
Q ss_conf 94678976552523799963248888888889999964389998779988999508950999638999998999998402
Q 000268 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 436 (1757)
Q Consensus 357 WDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sIafSpdG~~LasGs~DG~IrIWDi~t~~~~~s~~~~~~i 436 (1757)
|++..+........ .......+.+....++++..++.+.+|+..... .....
T Consensus 80 ~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 131 (293)
T d1p22a2 80 WDVNTGEMLNTLIH----------------------HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPT------DITLR 131 (293)
T ss_dssp EESSSCCEEEEECC----------------------CCSCEEEEECCTTEEEEEETTSCEEEEECSSSS------CCEEE
T ss_pred CCCCCCCCCCCCCC----------------------CCCCCCCCCCCCCCEEECCCCCCEEEEECCCCC------CCCCC
T ss_conf 00024641001111----------------------110000111111000001356630686134454------44212
Q ss_pred EEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 33037788800799826762233334568878888755455557870899818990999927888888522221122235
Q 000268 437 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHL 516 (1757)
Q Consensus 437 ~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l 516 (1757)
..+..|...+..+.+.+ ..+++++.|+.+++|++.+.+
T Consensus 132 ~~~~~~~~~v~~~~~~~----------------------------~~~~~~s~d~~i~~~d~~~~~-------------- 169 (293)
T d1p22a2 132 RVLVGHRAAVNVVDFDD----------------------------KYIVSASGDRTIKVWNTSTCE-------------- 169 (293)
T ss_dssp EEECCCSSCEEEEEEET----------------------------TEEEEEETTSEEEEEETTTCC--------------
T ss_pred CCCCCCCCCCCCCEECC----------------------------CCCCCCCCCCCEEEECCCCCC--------------
T ss_conf 10001135431100000----------------------------220110699860410078883--------------
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCC
Q ss_conf 69999999999999993110489997129998579979999953983999988999458998079988499999039994
Q 000268 517 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR 596 (1757)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LvSGs~DG~I~IWDl~tgkli~tL~gH~~~VtsIafSPdd~~ 596 (1757)
....+..+...+..+.++ +.++++++.|+.|++||+.++..+..+.+|...+..+. + +..
T Consensus 170 ---------------~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~--~-~~~ 229 (293)
T d1p22a2 170 ---------------FVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR--F-DNK 229 (293)
T ss_dssp ---------------EEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE--C-CSS
T ss_pred ---------------EEEEECCCCCCCCCCCCC--CCEEEEECCCCEEEEEECCCCEEEEEECCCCEEEEECC--C-CCE
T ss_conf ---------------889971554453221689--87588765899899986655614665214310000014--5-410
Q ss_pred EEEEEECCCCEEEEECCC---------CCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 999995899299996899---------922899860675257999947999999995797099999
Q 000268 597 IAMSAGYDGKTIVWDIWE---------GIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 653 (1757)
Q Consensus 597 lLaSgs~DG~IrIWDi~t---------g~~i~~l~~~~~~ItslafSPDG~~LAsgs~DG~I~IWd 653 (1757)
++++++.||.|++||+.. ..++..+..|...|++++| ++.+|++++.||.|++||
T Consensus 230 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 230 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred EEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEE--CCCEEEEEECCCEEEEEC
T ss_conf 7999867997999988888644456775455784588998899997--199999992299899959
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.2e-32 Score=232.70 Aligned_cols=146 Identities=15% Similarity=0.156 Sum_probs=104.4
Q ss_pred CEEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 22689981679878999997999999998187269999267870889980678985999995799999998489669999
Q 000268 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1757)
Q Consensus 233 ~k~i~tL~GH~~~V~sIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~gHs~~VtsIafSPDg~lLASgS~DGtIrIW 312 (1757)
.+++++|.||..+|+|++|+| |+||+.||+|++||+.++ ..+|...|.+++|++++ .+++++.|++|++|
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w 72 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVN 72 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEETTTEEEET
T ss_pred CCEEEEECCCCCCEEEEEECC----EEEEECCCEEEEEECCCC-----CCCCCCCEEEEEECCCC-EEEEEEECCCCCCC
T ss_conf 603499988798649999895----789848991999989998-----88877878999965997-28988610122211
Q ss_pred ECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 78999705884177885599995279995079999928991999946789765525237999632488888888899999
Q 000268 313 RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1757)
Q Consensus 313 Dl~tg~~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~ 392 (1757)
++...+ ....+.++++.+++ .++..+.++.+.+|+...+.....+.. .
T Consensus 73 ~~~~~~-------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~ 120 (287)
T d1pgua2 73 GITKHE-------FGSQPKVASANNDG----FTAVLTNDDDLLILQSFTGDIIKSVRL---------------------N 120 (287)
T ss_dssp TEEEEE-------CSSCEEEEEECSSS----EEEEEETTSEEEEEETTTCCEEEEEEC---------------------S
T ss_pred CCCCCC-------CCCCEEEEEECCCC----CEEEEEECCCCEEEECCCEEEEEECCC---------------------C
T ss_conf 111111-------12210146641678----569996033210000110035431012---------------------2
Q ss_pred CCEEEEEECCCCCEEEEEECCC-EEEEECCC
Q ss_conf 6438999877998899950895-09996389
Q 000268 393 HQIFCCAFNANGTVFVTGSSDT-LARVWNAC 422 (1757)
Q Consensus 393 ~~V~sIafSpdG~~LasGs~DG-~IrIWDi~ 422 (1757)
. .+.++++++..+++++.++ .+++|++.
T Consensus 121 ~--~~~~~~~~~~~~~v~~~~~~~v~~~~~~ 149 (287)
T d1pgua2 121 S--PGSAVSLSQNYVAVGLEEGNTIQVFKLS 149 (287)
T ss_dssp S--CEEEEEECSSEEEEEETTTSCEEEEETT
T ss_pred C--EEEEEECCCCCEEEECCCCCEEEEEECC
T ss_conf 2--0356521475111000221000210001
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.3e-32 Score=228.69 Aligned_cols=273 Identities=13% Similarity=0.106 Sum_probs=212.4
Q ss_pred CCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCC
Q ss_conf 87088998067898599999579999999848966999978999705884177885599995279995079999928991
Q 000268 274 TAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGT 353 (1757)
Q Consensus 274 tg~~l~tL~gHs~~VtsIafSPDg~lLASgS~DGtIrIWDl~tg~~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGt 353 (1757)
+.++++++.||..+|++++|+| |++|+.||+|++|++.++ ..+|...|.+++|+++. .+++++.|++
T Consensus 2 ~~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~----~~~s~s~D~~ 68 (287)
T d1pgua2 2 HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ----EYSSISWDDT 68 (287)
T ss_dssp EEEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT----CCEEEETTTE
T ss_pred CCCEEEEECCCCCCEEEEEECC----EEEEECCCEEEEEECCCC-----CCCCCCCEEEEEECCCC----EEEEEEECCC
T ss_conf 9603499988798649999895----789848991999989998-----88877878999965997----2898861012
Q ss_pred EEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCC
Q ss_conf 99994678976552523799963248888888889999964389998779988999508950999638999998999998
Q 000268 354 CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPN 433 (1757)
Q Consensus 354 IrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sIafSpdG~~LasGs~DG~IrIWDi~t~~~~~s~~~~ 433 (1757)
|++|++.... ....+.++++++++..++++. ++.+.+|+..++
T Consensus 69 v~~w~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--------- 111 (287)
T d1pgua2 69 LKVNGITKHE---------------------------FGSQPKVASANNDGFTAVLTN-DDDLLILQSFTG--------- 111 (287)
T ss_dssp EEETTEEEEE---------------------------CSSCEEEEEECSSSEEEEEET-TSEEEEEETTTC---------
T ss_pred CCCCCCCCCC---------------------------CCCCEEEEEECCCCCEEEEEE-CCCCEEEECCCE---------
T ss_conf 2211111111---------------------------122101466416785699960-332100001100---------
Q ss_pred CCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC-CEEEEEECCCCCCCCCCCCCCC
Q ss_conf 402330377888007998267622333345688788887554555578708998189-9099992788888852222112
Q 000268 434 HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRD-GSAIIWIPRSRRSHPKAARWTQ 512 (1757)
Q Consensus 434 ~~i~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~D-GtI~IWDl~t~k~~~~~~~w~~ 512 (1757)
..+..+.. ...+. .+++++ ..+++++.+ +.+++|++.....
T Consensus 112 ~~~~~~~~-~~~~~--~~~~~~--------------------------~~~~v~~~~~~~v~~~~~~~~~~--------- 153 (287)
T d1pgua2 112 DIIKSVRL-NSPGS--AVSLSQ--------------------------NYVAVGLEEGNTIQVFKLSDLEV--------- 153 (287)
T ss_dssp CEEEEEEC-SSCEE--EEEECS--------------------------SEEEEEETTTSCEEEEETTEEEE---------
T ss_pred EEEEECCC-CCEEE--EEECCC--------------------------CCEEEECCCCCEEEEEECCCCCE---------
T ss_conf 35431012-22035--652147--------------------------51110002210002100012210---------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE-EEECCCCCEEEEEEE
Q ss_conf 2235699999999999999931104899971299985799799999539839999889994589-980799884999990
Q 000268 513 AYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVH-SLTGHTESTYVLDVH 591 (1757)
Q Consensus 513 ~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LvSGs~DG~I~IWDl~tgkli~-tL~gH~~~VtsIafS 591 (1757)
.......+...+++++|+|++.+|++|+.||.|++||+.++.... .+.+|...|.+++|+
T Consensus 154 -------------------~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~ 214 (287)
T d1pgua2 154 -------------------SFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWK 214 (287)
T ss_dssp -------------------EEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEEC
T ss_pred -------------------EEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEC
T ss_conf -------------------0012102478536999516765211011111100000023321100011111111000001
Q ss_pred CC---------CCCEEEEEECCCCEEEEECCC-CCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 39---------994999995899299996899-9228998606752579999479999999957970999998
Q 000268 592 PF---------NPRIAMSAGYDGKTIVWDIWE-GIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 654 (1757)
Q Consensus 592 Pd---------d~~lLaSgs~DG~IrIWDi~t-g~~i~~l~~~~~~ItslafSPDG~~LAsgs~DG~I~IWdl 654 (1757)
|. +..++++|+.|+.|+||++.+ +.++..+.+|...|++++|+|++ .|++++.||.|++|++
T Consensus 215 p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 215 PAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp CCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred CCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCC-EEEEEECCCEEEEEEE
T ss_conf 36541001267887027664999599988899975899927878985899998999-8999979992999997
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.2e-31 Score=222.74 Aligned_cols=299 Identities=10% Similarity=0.040 Sum_probs=215.8
Q ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEE---ECCCCCCEEEEEECCCCCCEEEEEEEECCC
Q ss_conf 08899806789859999957999999984896699997899970588---417788559999527999507999992899
Q 000268 276 YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISV---LRGHTAAVTAIAFSPRPGSVYQLLSSSDDG 352 (1757)
Q Consensus 276 ~~l~tL~gHs~~VtsIafSPDg~lLASgS~DGtIrIWDl~tg~~i~~---l~gH~~~VtsIafSPdg~~~~~LvSgs~DG 352 (1757)
+.+....+|...|++|+|+|++++||+|+.||+|+|||+.++..... ..+|...|.+++|+|++. .+|++++.||
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~--~~l~sg~~d~ 79 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTD--LQIYVGTVQG 79 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSS--EEEEEEETTS
T ss_pred CEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCC--CEEEECCCCC
T ss_conf 75976889989788899958999999997999299997569986368988558999889999958999--7899812653
Q ss_pred CEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCC
Q ss_conf 19999467897655252379996324888888888999996438999877998899950895099963899999899999
Q 000268 353 TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQP 432 (1757)
Q Consensus 353 tIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sIafSpdG~~LasGs~DG~IrIWDi~t~~~~~s~~~ 432 (1757)
.|++|++........... .+........+.++...+++++.++.+++||++.....
T Consensus 80 ~v~~w~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~----- 135 (342)
T d1yfqa_ 80 EILKVDLIGSPSFQALTN-------------------NEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDG----- 135 (342)
T ss_dssp CEEEECSSSSSSEEECBS-------------------CCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTB-----
T ss_pred CEEEEECCCCCCCCCCCC-------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-----
T ss_conf 114542044320000011-------------------11111111111111111111012221110202344433-----
Q ss_pred CCCEEEECCCCC--CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 840233037788--800799826762233334568878888755455557870899818990999927888888522221
Q 000268 433 NHEIDVLSGHEN--DVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510 (1757)
Q Consensus 433 ~~~i~~l~gH~~--~V~sIafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w 510 (1757)
.........+.. ......+.+. ...+++++.|+.|++|++.......
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~d~~i~~~~~~~~~~~~----- 184 (342)
T d1yfqa_ 136 VIAVKNLNSNNTKVKNKIFTMDTN--------------------------SSRLIVGMNNSQVQWFRLPLCEDDN----- 184 (342)
T ss_dssp CEEEEESCSSSSSSCCCEEEEEEC--------------------------SSEEEEEESTTEEEEEESSCCTTCC-----
T ss_pred EEEECCCCCCCCCCEEEEEEEECC--------------------------CCCEEEECCCCCEEEEECCCCCCCC-----
T ss_conf 023000243001200000100016--------------------------8702465179847887605676341-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEE-ECCCCCEEEEEECCCEEEEEECCCCCEE------E-------
Q ss_conf 1222356999999999999999311048999712999-8579979999953983999988999458------9-------
Q 000268 511 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV-WSLDNRFVLAAIMDCRICVWNAADGSLV------H------- 576 (1757)
Q Consensus 511 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIa-fSPDG~~LvSGs~DG~I~IWDl~tgkli------~------- 576 (1757)
...........+.+.. ++.++..+++++.||.+.+|+....... .
T Consensus 185 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~ 243 (342)
T d1yfqa_ 185 ---------------------GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243 (342)
T ss_dssp ---------------------CEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCC
T ss_pred ---------------------EEEEECCCCCCEEEEEEECCCCCEEEEECCCCEEEEEEECCCCCEEECCCCCEEEEEEE
T ss_conf ---------------------11210254221014676369998788654899599998059864011123512565553
Q ss_pred --EEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf --980799884999990399949999958992999968999228998606752579999479999999957970999998
Q 000268 577 --SLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 654 (1757)
Q Consensus 577 --tL~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDi~tg~~i~~l~~~~~~ItslafSPDG~~LAsgs~DG~I~IWdl 654 (1757)
...+|...|++++|+| ++.+|++|+.||.|+|||+.+++++..+..+ ..+..++|+|+|++|++++.|+.+.+|..
T Consensus 244 ~~~~~~~~~~v~~l~~sp-~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~~~~ 321 (342)
T d1yfqa_ 244 NLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred CCCCCCCCCCCEEEEECC-CCCEEEEECCCCEEEEEECCCCCEEEEECCC-CCCEEEEEEECCCEEEEEECCCCEEEEEE
T ss_conf 147776235431599669-8447999879998999999989498870589-99879999947999999991992788301
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=6.7e-30 Score=215.62 Aligned_cols=352 Identities=11% Similarity=0.030 Sum_probs=220.8
Q ss_pred CCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEE-----CCCCC
Q ss_conf 9999999818726999926787088998067898599999579999999848966999978999705884-----17788
Q 000268 254 SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL-----RGHTA 328 (1757)
Q Consensus 254 DG~~LATGS~DGtIkIWDi~tg~~l~tL~gHs~~VtsIafSPDg~lLASgS~DGtIrIWDl~tg~~i~~l-----~gH~~ 328 (1757)
.+-++++.+.||.|+|||+.+++.+.++..+. .+..++|+|||++|++++.|++|++||+.+++..... .+|.+
T Consensus 31 ~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~ 109 (426)
T d1hzua2 31 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARS 109 (426)
T ss_dssp GGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEE
T ss_pred CEEEEEEECCCCEEEEEECCCCCEEEEEECCC-CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCC
T ss_conf 70899997599979999999995999996899-80389998999999999589988999756886048999867888764
Q ss_pred CEEEEEECCCCCCEEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEE
Q ss_conf 55999952799950799999289919999467897655252379996324888888888999996438999877998899
Q 000268 329 AVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFV 408 (1757)
Q Consensus 329 ~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sIafSpdG~~La 408 (1757)
.+.+++|+||++ +.++++..++.+.+||..++.+...+...... ..............+++++++..++
T Consensus 110 ~~~s~~~spDG~--~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~i~~s~d~~~~~ 178 (426)
T d1hzua2 110 VESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT---------VDTQTYHPEPRVAAIIASHEHPEFI 178 (426)
T ss_dssp EEECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEEC---------SSSCCEESCCCEEEEEECSSSSEEE
T ss_pred EEEEEEECCCCC--EEEEEECCCCEEEEECCCCCCEEEEEECCCCC---------CCCEEECCCCCEEEEEECCCCCEEE
T ss_conf 588500268898--79996358976999857764125786226777---------3643642788503899878787888
Q ss_pred EEEC-CCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 9508-950999638999998999998402330377888007998267622333345688788887554555578708998
Q 000268 409 TGSS-DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC 487 (1757)
Q Consensus 409 sGs~-DG~IrIWDi~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSg 487 (1757)
.... .+.+.+++.... .........+...+..+.|++++ ...+++.
T Consensus 179 ~~~~~~~~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~g-------------------------~~~~~a~ 225 (426)
T d1hzua2 179 VNVKETGKVLLVNYKDI--------DNLTVTSIGAAPFLADGGWDSSH-------------------------RYFMTAA 225 (426)
T ss_dssp EEETTTTEEEEEECSSS--------SSCEEEEEECCSSEEEEEECTTS-------------------------CEEEEEE
T ss_pred EECCCCCEEEEEEECCC--------CCEEEEEECCCCCCEEEEECCCC-------------------------CEEEEEE
T ss_conf 85278976999992466--------52045775667753761377888-------------------------6788642
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 18990999927888888522221122235699999999999999931104899971299985799799999539839999
Q 000268 488 SRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVW 567 (1757)
Q Consensus 488 S~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LvSGs~DG~I~IW 567 (1757)
..+..+.+|+..+++....... .. .............+...+....++ .|+.+.+|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~-------~~-------~~~~~~~~~~~~~~~~~~~~~~~~----------~d~~v~~~ 281 (426)
T d1hzua2 226 NNSNKVAVIDSKDRRLSALVDV-------GK-------TPHPGRGANFVHPKYGPVWSTSHL----------GDGSISLI 281 (426)
T ss_dssp TTCSEEEEEETTTTEEEEEEEC-------SS-------CCCCSCCEEEEETTTEEEEEEECT----------TTCEEEEE
T ss_pred ECCCCEEEEECCCCCEEEEECC-------CC-------CCCCCCEEEEECCCCCCEEEECCC----------CCCEEEEE
T ss_conf 0110000000255627887505-------87-------444342011006987745774157----------89659885
Q ss_pred ECC-------CCCEEEEEECCCCCEEEEEEECCCCCEEE-------EEECCCCEEEEECCCCCEEEEEE---------EC
Q ss_conf 889-------99458998079988499999039994999-------99589929999689992289986---------06
Q 000268 568 NAA-------DGSLVHSLTGHTESTYVLDVHPFNPRIAM-------SAGYDGKTIVWDIWEGIPIRIYE---------IS 624 (1757)
Q Consensus 568 Dl~-------tgkli~tL~gH~~~VtsIafSPdd~~lLa-------Sgs~DG~IrIWDi~tg~~i~~l~---------~~ 624 (1757)
+.. .++....+.+|...+..++|+| ++++++ ++..|++|+|||+.++++...+. .+
T Consensus 282 ~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sP-dg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~ 360 (426)
T d1hzua2 282 GTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEG 360 (426)
T ss_dssp ECCTTTCTTTBTSEEEEEECSSSCCCCEECCT-TCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSS
T ss_pred ECCCCCCCCCCCEEEEEEECCCCCEEEEECCC-CCCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCHHCCCCCC
T ss_conf 22566520330258689866887636787489-98618885067988022887999989878767089502110256778
Q ss_pred CCCEEEEEECCCCCEEEEE-----ECCCEEEEEECCCCCCCCCCCCCEEECCCCCC
Q ss_conf 7525799994799999999-----57970999998998311354321122179850
Q 000268 625 RFRLVDGKFSPDGASIILS-----DDVGQLYILNTGQGESQKDAKYDQFFLGDYRP 675 (1757)
Q Consensus 625 ~~~ItslafSPDG~~LAsg-----s~DG~I~IWdl~sGe~~~~~~~~~~fs~D~r~ 675 (1757)
...+..++|||||++|+++ +.+|.|.|||..+++....+.....++|+|..
T Consensus 361 ~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~~~tp~Gk~ 416 (426)
T d1hzua2 361 AKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPRLITPTGKF 416 (426)
T ss_dssp CCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTTCCSEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCEE
T ss_conf 85189879999999999997248888982999999987389998789841999557
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.98 E-value=4.9e-30 Score=216.56 Aligned_cols=352 Identities=13% Similarity=0.024 Sum_probs=238.7
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEE--EEEEE---CCCCCEEEEEECCC
Q ss_conf 33467621123226899816798789999979999999981872699992678708--89980---67898599999579
Q 000268 222 AIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYC--LASCR---GHEGDITDLAVSSN 296 (1757)
Q Consensus 222 ~~~~~~~~~~~~k~i~tL~GH~~~V~sIaFSPDG~~LATGS~DGtIkIWDi~tg~~--l~tL~---gHs~~VtsIafSPD 296 (1757)
......|+..+++++++|..|. .+..++|||||++|++++.|+.|.+||+.+++. ...+. +|.+.+.+.+|+||
T Consensus 41 ~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpD 119 (432)
T d1qksa2 41 AGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWE 119 (432)
T ss_dssp TTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCT
T ss_pred CCEEEEEECCCCCEEEEEECCC-CEEEEEECCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCEEEECCCCCC
T ss_conf 9979999899983999973799-713799889999999982899978998108981288998448898776984321888
Q ss_pred CCEE-EEEECCCEEEEEECCCCCCEEEECCC-----------CCCEEEEEECCCCCCEEEEEEEECCCCEEEEECCCCCC
Q ss_conf 9999-99848966999978999705884177-----------88559999527999507999992899199994678976
Q 000268 297 NALV-ASASNDCIIRVWRLPDGLPISVLRGH-----------TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQF 364 (1757)
Q Consensus 297 g~lL-ASgS~DGtIrIWDl~tg~~i~~l~gH-----------~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~ 364 (1757)
|++| +++..++.|++||..+++++..+..+ ......+.+++++. ..+++...++.|.+|+..+.+.
T Consensus 120 G~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~--~~~vs~~~~~~i~~~d~~~~~~ 197 (432)
T d1qksa2 120 DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP--EFIVNVKETGKILLVDYTDLNN 197 (432)
T ss_dssp TTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSS--EEEEEETTTTEEEEEETTCSSE
T ss_pred CCEEEEECCCCCEEEEEECCCCCCEEEECCCCCCCCCEECCCCCCEEEEEECCCCC--EEEEEECCCCEEEEEECCCCCC
T ss_conf 88899981789827999076554225402477643522016888505899878999--8999981688299998437875
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEC-CCEEEEECCCCCCCCCCCCCCCCEEEEC---
Q ss_conf 552523799963248888888889999964389998779988999508-9509996389999989999984023303---
Q 000268 365 SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTLARVWNACKPNTDDSDQPNHEIDVLS--- 440 (1757)
Q Consensus 365 ~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sIafSpdG~~LasGs~-DG~IrIWDi~t~~~~~s~~~~~~i~~l~--- 440 (1757)
.....+ .....+..++|+|+|+++++++. ++.+.+++..+.. ....+.
T Consensus 198 ~~~~~i-------------------~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~---------~~~~~~~g~ 249 (432)
T d1qksa2 198 LKTTEI-------------------SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK---------LVAIEDTGG 249 (432)
T ss_dssp EEEEEE-------------------ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE---------EEEEEECSS
T ss_pred CEEEEE-------------------CCCCCCCCCEECCCCCEEEEECCCCCEEEEEECCCCE---------EEEEECCCC
T ss_conf 227998-------------------3367542653889887999951666367776144526---------888721486
Q ss_pred --CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE-CCCCEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf --77888007998267622333345688788887554555578708998-189909999278888885222211222356
Q 000268 441 --GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC-SRDGSAIIWIPRSRRSHPKAARWTQAYHLK 517 (1757)
Q Consensus 441 --gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSg-S~DGtI~IWDl~t~k~~~~~~~w~~~~~l~ 517 (1757)
.|........+...+ ....+. ..++.+.+|......
T Consensus 250 ~~~~~~~~~~~~~~~~g--------------------------~~~~~~~lg~~~v~~~~~~~~~--------------- 288 (432)
T d1qksa2 250 QTPHPGRGANFVHPTFG--------------------------PVWATSHMGDDSVALIGTDPEG--------------- 288 (432)
T ss_dssp SSBCCTTCEEEEETTTE--------------------------EEEEEEBSSSSEEEEEECCTTT---------------
T ss_pred CCCCCCCCCCEECCCCC--------------------------CEECCCCCCCCEEEECCCCCCC---------------
T ss_conf 22456766410148988--------------------------3102135688358762456655---------------
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCE
Q ss_conf 99999999999999931104899971299985799799999539839999889994589980799884999990399949
Q 000268 518 VPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRI 597 (1757)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LvSGs~DG~I~IWDl~tgkli~tL~gH~~~VtsIafSPdd~~l 597 (1757)
...+...+....+++++..+++++.+...++|...... .|......+++ | +++.
T Consensus 289 ------------------~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~------~~~~~~~sv~v-p-Dg~~ 342 (432)
T d1qksa2 289 ------------------HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN------PEAEISGSVAV-F-DIKA 342 (432)
T ss_dssp ------------------CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC------SSHHHHTCEEE-E-EGGG
T ss_pred ------------------CCCCCCEEEEEEECCCCCEEEEEECCCCCCEEECCCCC------CCCCEEEEEEE-E-ECHH
T ss_conf ------------------54656577799886899768887268864102112678------88770359999-9-6246
Q ss_pred EEEEECCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEE-----CCCEEEEEECCCCCCCCCCCCCEEECCC
Q ss_conf 99995899299996899922899860675257999947999999995-----7970999998998311354321122179
Q 000268 598 AMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSD-----DVGQLYILNTGQGESQKDAKYDQFFLGD 672 (1757)
Q Consensus 598 LaSgs~DG~IrIWDi~tg~~i~~l~~~~~~ItslafSPDG~~LAsgs-----~DG~I~IWdl~sGe~~~~~~~~~~fs~D 672 (1757)
+++++.|+.+++|++.++..+ ..+...+.+++|||||++|+++. .+|.|.|||..+++..+.+.....++|+
T Consensus 343 la~~s~d~~~k~w~~~~~~~l---~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~~~~tp~ 419 (432)
T d1qksa2 343 MTGDGSDPEFKTLPIAEWAGI---TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDERLVTPT 419 (432)
T ss_dssp CCCSSSCCCEEEECHHHHHTC---CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCTTCCSEE
T ss_pred HCCCCCCCCEEECCCCCCCCC---CCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCEEEEEECCCCCCCCC
T ss_conf 104556784486334344445---78998689767989999999997048888886899999995588684688840897
Q ss_pred CC
Q ss_conf 85
Q 000268 673 YR 674 (1757)
Q Consensus 673 ~r 674 (1757)
|.
T Consensus 420 G~ 421 (432)
T d1qksa2 420 GK 421 (432)
T ss_dssp EE
T ss_pred EE
T ss_conf 06
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.97 E-value=6.2e-29 Score=209.04 Aligned_cols=350 Identities=9% Similarity=-0.003 Sum_probs=218.4
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEE--E---CCCCCEEEEEECC
Q ss_conf 1334676211232268998167987899999799999999818726999926787088998--0---6789859999957
Q 000268 221 YAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASC--R---GHEGDITDLAVSS 295 (1757)
Q Consensus 221 ~~~~~~~~~~~~~k~i~tL~GH~~~V~sIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL--~---gHs~~VtsIafSP 295 (1757)
.......|+..+++.+.+|.+|. .+..++|||||++|++++.|++|++||+.+++..... . +|.+.+.+++|+|
T Consensus 40 ~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~sp 118 (426)
T d1hzua2 40 DAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGY 118 (426)
T ss_dssp TTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTC
T ss_pred CCCEEEEEECCCCCEEEEEECCC-CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCEEEEEEECC
T ss_conf 99979999999995999996899-80389998999999999589988999756886048999867888764588500268
Q ss_pred CCCEEEE-EECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECCCCCCCCEEECCCCC
Q ss_conf 9999999-848966999978999705884177885599995279995079999928991999946789765525237999
Q 000268 296 NNALVAS-ASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPS 374 (1757)
Q Consensus 296 Dg~lLAS-gS~DGtIrIWDl~tg~~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~~~~i~l~~~~ 374 (1757)
||++|++ +..++.+.+||..++.++..+.++...+..+.|.+++. ...++.+.|+...+|.......+.........
T Consensus 119 DG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~ 196 (426)
T d1hzua2 119 EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR--VAAIIASHEHPEFIVNVKETGKVLLVNYKDID 196 (426)
T ss_dssp TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCC--EEEEEECSSSSEEEEEETTTTEEEEEECSSSS
T ss_pred CCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCCCEEECCCCC--EEEEEECCCCCEEEEECCCCCEEEEEEECCCC
T ss_conf 8987999635897699985776412578622677736436427885--03899878787888852789769999924665
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEC-CCEEEEECCCCCCCCCCCCCCCCEEEEC--CCCCCCEEEEE
Q ss_conf 63248888888889999964389998779988999508-9509996389999989999984023303--77888007998
Q 000268 375 DAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTLARVWNACKPNTDDSDQPNHEIDVLS--GHENDVNYVQF 451 (1757)
Q Consensus 375 ~~~~g~~~~~~~~~~~~~~~V~sIafSpdG~~LasGs~-DG~IrIWDi~t~~~~~s~~~~~~i~~l~--gH~~~V~sIaf 451 (1757)
.......++...+..+.|+|++++++++.. +..+.+++..++. .+.... .+........+
T Consensus 197 --------~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 259 (426)
T d1hzua2 197 --------NLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRR---------LSALVDVGKTPHPGRGANF 259 (426)
T ss_dssp --------SCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTE---------EEEEEECSSCCCCSCCEEE
T ss_pred --------CEEEEEECCCCCCEEEEECCCCCEEEEEEECCCCEEEEECCCCC---------EEEEECCCCCCCCCCEEEE
T ss_conf --------20457756677537613778886788642011000000025562---------7887505874443420110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 26762233334568878888755455557870899818990999927888888522221122235699999999999999
Q 000268 452 SGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGG 531 (1757)
Q Consensus 452 Spdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~ 531 (1757)
...... .-..+..+.|+.+.+|+....... .....
T Consensus 260 ~~~~~~-----------------------~~~~~~~~~d~~v~~~~~~~~~~~----------------------~~~~~ 294 (426)
T d1hzua2 260 VHPKYG-----------------------PVWSTSHLGDGSISLIGTDPKNHP----------------------QYAWK 294 (426)
T ss_dssp EETTTE-----------------------EEEEEECTTTCEEEEEECCTTTCT----------------------TTBTS
T ss_pred ECCCCC-----------------------CEEEECCCCCCEEEEEECCCCCCC----------------------CCCCE
T ss_conf 069877-----------------------457741578965988522566520----------------------33025
Q ss_pred CCEEECCCCCCEEEEEECCCCCEEEE-------EECCCEEEEEECCCCCEEEEEE---------CCCCCEEEEEEECCCC
Q ss_conf 93110489997129998579979999-------9539839999889994589980---------7998849999903999
Q 000268 532 PRQRILPTPRGVNMIVWSLDNRFVLA-------AIMDCRICVWNAADGSLVHSLT---------GHTESTYVLDVHPFNP 595 (1757)
Q Consensus 532 ~~~~l~~h~~~VtsIafSPDG~~LvS-------Gs~DG~I~IWDl~tgkli~tL~---------gH~~~VtsIafSPdd~ 595 (1757)
....+.+|...+..++|+|++++|++ +..+++|+|||+.++++..++. .|...|..++|+|++.
T Consensus 295 ~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk 374 (426)
T d1hzua2 295 KVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGD 374 (426)
T ss_dssp EEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSS
T ss_pred EEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCHHCCCCCCCCCEEEEEECCCCC
T ss_conf 86898668876367874899861888506798802288799998987876708950211025677885189879999999
Q ss_pred CEEEEE----ECCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEE
Q ss_conf 499999----5899299996899922899860675257999947999999
Q 000268 596 RIAMSA----GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASII 641 (1757)
Q Consensus 596 ~lLaSg----s~DG~IrIWDi~tg~~i~~l~~~~~~ItslafSPDG~~LA 641 (1757)
++++++ +.++.|+|||..+++....+.... .++|+|+|.+
T Consensus 375 ~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~~ 418 (426)
T d1hzua2 375 EVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFNV 418 (426)
T ss_dssp EEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEEH
T ss_pred EEEEEEECCCCCCCEEEEEECCCCEEEEEECCCC------CCCCCCEEEE
T ss_conf 9999972488889829999999873899987898------4199955757
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.97 E-value=1.2e-29 Score=213.91 Aligned_cols=314 Identities=12% Similarity=0.065 Sum_probs=218.0
Q ss_pred CCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCC--CEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE
Q ss_conf 62112322689981679878999997999999998187--2699992678708899806789859999957999999984
Q 000268 227 STMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDD--RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS 304 (1757)
Q Consensus 227 ~~~~~~~k~i~tL~GH~~~V~sIaFSPDG~~LATGS~D--GtIkIWDi~tg~~l~tL~gHs~~VtsIafSPDg~lLASgS 304 (1757)
.|.....+.++ + +|...|.+++|+|||++|++++.+ ..|++||+.++... .+..|...|.+++|+|++++|++++
T Consensus 28 v~d~~~~~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~ 104 (360)
T d1k32a3 28 IQDVSGTYVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVAN 104 (360)
T ss_dssp EECTTSSBEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEE
T ss_pred EEECCCCCEEE-C-CCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEE-EEECCCCEEEEEEECCCCCCCCEEC
T ss_conf 99899994899-1-6999888899989999999999289989999989999488-7508971277412114543210001
Q ss_pred CCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEE----------CCCCEEEEECCCCCCCCEEECCCCC
Q ss_conf 896699997899970588417788559999527999507999992----------8991999946789765525237999
Q 000268 305 NDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS----------DDGTCRIWDARYSQFSPRIYIPRPS 374 (1757)
Q Consensus 305 ~DGtIrIWDl~tg~~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs----------~DGtIrIWDl~tg~~~~~i~l~~~~ 374 (1757)
.++.+++|++.++.....+..|...+.+++|+|+++ +|+.+. .++.+++|++.++......
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~---~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~------ 175 (360)
T d1k32a3 105 DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSR---FIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT------ 175 (360)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSC---EEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS------
T ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCCHHHCCCEE---EEEEECCCCCCCEEECCCCCEEEECCCCCCEEEEC------
T ss_conf 111100000122210000001355202301213225---66521233121100025654266304557135303------
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCC
Q ss_conf 63248888888889999964389998779988999508950999638999998999998402330377888007998267
Q 000268 375 DAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 454 (1757)
Q Consensus 375 ~~~~g~~~~~~~~~~~~~~~V~sIafSpdG~~LasGs~DG~IrIWDi~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpd 454 (1757)
.+...+.+++|+|+|+.|++++.++.+.+|+........ ........+..+...+..+.|+++
T Consensus 176 ---------------~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~ 238 (360)
T d1k32a3 176 ---------------TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSF--EVVSKPFVIPLIPGSPNPTKLVPR 238 (360)
T ss_dssp ---------------CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEEC--CSCBEEEEEESSTTCCCGGGCCCG
T ss_pred ---------------CCCCCCCCCCCCCCCCEEEEEECCCCEECCCCCCCCEEE--CCCCCEEEEECCCCCCCCCEECCC
T ss_conf ---------------543221100125779999999599855753335440232--036411798524696012068777
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC---EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6223333456887888875545555787089981899---0999927888888522221122235699999999999999
Q 000268 455 AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG---SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGG 531 (1757)
Q Consensus 455 g~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DG---tI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~ 531 (1757)
+. .++++..+. ..++|.+.. ...
T Consensus 239 ~~--------------------------~~~~~~~~~~~~~~~~~~~~~----------------------------~~~ 264 (360)
T d1k32a3 239 SM--------------------------TSEAGEYDLNDMYKRSSPINV----------------------------DPG 264 (360)
T ss_dssp GG--------------------------SCCCCCCCCTTGGGGCEECSC----------------------------CCB
T ss_pred CC--------------------------CCCCCCEEECCCCCCEEECCC----------------------------CCC
T ss_conf 67--------------------------155311365266540010124----------------------------767
Q ss_pred CCEEECCCCCCEEEEEECCC---CCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEE
Q ss_conf 93110489997129998579---979999953983999988999458998079988499999039994999995899299
Q 000268 532 PRQRILPTPRGVNMIVWSLD---NRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 608 (1757)
Q Consensus 532 ~~~~l~~h~~~VtsIafSPD---G~~LvSGs~DG~I~IWDl~tgkli~tL~gH~~~VtsIafSPdd~~lLaSgs~DG~Ir 608 (1757)
....+..+...+..+.+... +.++++++.++.|++||+.+++... |.+.|.+++|+| |++.|++++.||.|+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~----~~~~v~~~~~Sp-DG~~l~~~~~Dg~i~ 339 (360)
T d1k32a3 265 DYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE----VKNNLTDLRLSA-DRKTVMVRKDDGKIY 339 (360)
T ss_dssp CEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE----EEEEEEEEEECT-TSCEEEEEETTSCEE
T ss_pred CEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEE----ECCCCCEEEECC-CCCEEEEEECCCEEE
T ss_conf 526754138985699997359970699964899879999799974988----648868799999-898999997899499
Q ss_pred EEECCCCCEEEEEEECCCCE
Q ss_conf 99689992289986067525
Q 000268 609 VWDIWEGIPIRIYEISRFRL 628 (1757)
Q Consensus 609 IWDi~tg~~i~~l~~~~~~I 628 (1757)
+|++.++....++.....++
T Consensus 340 v~d~~~~~~~~~~~~d~~~~ 359 (360)
T d1k32a3 340 TFPLEKPEDERTVETDKRPL 359 (360)
T ss_dssp EEESSCTTSCEECCCCSSCE
T ss_pred EEECCCCCCCEEEEECCCCC
T ss_conf 99999998545998416225
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.97 E-value=3.9e-27 Score=196.70 Aligned_cols=367 Identities=6% Similarity=-0.098 Sum_probs=226.2
Q ss_pred CCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCE--EE---ECCCC
Q ss_conf 99999999818726999926787088998067898599999579999999848966999978999705--88---41778
Q 000268 253 RSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI--SV---LRGHT 327 (1757)
Q Consensus 253 PDG~~LATGS~DGtIkIWDi~tg~~l~tL~gHs~~VtsIafSPDg~lLASgS~DGtIrIWDl~tg~~i--~~---l~gH~ 327 (1757)
++.-++++.+.+|.|.|||..+++++.++..+ ..+..++|+|||++|++++.|+.|++||+.+++.. .. ..+|.
T Consensus 30 ~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~ 108 (432)
T d1qksa2 30 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR 108 (432)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE
T ss_pred CCCEEEEEECCCCEEEEEECCCCCEEEEEECC-CCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCC
T ss_conf 78289999769997999989998399997379-97137998899999999828999789981089812889984488987
Q ss_pred CCEEEEEECCCCCCEEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEE
Q ss_conf 85599995279995079999928991999946789765525237999632488888888899999643899987799889
Q 000268 328 AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVF 407 (1757)
Q Consensus 328 ~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sIafSpdG~~L 407 (1757)
+.+.+..|+|||+ ++++++..+++|++||..+++....+....... .............+.++++|..+
T Consensus 109 ~~~~s~~~SpDG~--~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~---------~~~~~~~~~~~~~v~~s~dg~~~ 177 (432)
T d1qksa2 109 SIETSKMEGWEDK--YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY---------DEQEYHPEPRVAAILASHYRPEF 177 (432)
T ss_dssp EEEECCSTTCTTT--EEEEEEEETTEEEEEETTTCCEEEEEECCEECT---------TTCCEESCCCEEEEEECSSSSEE
T ss_pred CEEEECCCCCCCC--EEEEECCCCCEEEEEECCCCCCEEEECCCCCCC---------CCEECCCCCCEEEEEECCCCCEE
T ss_conf 7698432188888--899981789827999076554225402477643---------52201688850589987899989
Q ss_pred E-EEECCCEEEEECCCCCCCCCCCCCCCCEEEE-CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE-
Q ss_conf 9-9508950999638999998999998402330-377888007998267622333345688788887554555578708-
Q 000268 408 V-TGSSDTLARVWNACKPNTDDSDQPNHEIDVL-SGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI- 484 (1757)
Q Consensus 408 a-sGs~DG~IrIWDi~t~~~~~s~~~~~~i~~l-~gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~L- 484 (1757)
+ +...++.|.+|+..+. ...... ..+...+..+.|+|++ .++
T Consensus 178 ~vs~~~~~~i~~~d~~~~---------~~~~~~~i~~g~~~~~~~~spdg--------------------------~~~~ 222 (432)
T d1qksa2 178 IVNVKETGKILLVDYTDL---------NNLKTTEISAERFLHDGGLDGSH--------------------------RYFI 222 (432)
T ss_dssp EEEETTTTEEEEEETTCS---------SEEEEEEEECCSSEEEEEECTTS--------------------------CEEE
T ss_pred EEEECCCCEEEEEECCCC---------CCCEEEEECCCCCCCCCEECCCC--------------------------CEEE
T ss_conf 999816882999984378---------75227998336754265388988--------------------------7999
Q ss_pred EEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEE-CCCE
Q ss_conf 998189909999278888885222211222356999999999999999311048999712999857997999995-3983
Q 000268 485 VTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI-MDCR 563 (1757)
Q Consensus 485 vSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LvSGs-~DG~ 563 (1757)
+++..++.+.+++..+.+....... .....+........+...+...++.. .++.
T Consensus 223 va~~~~~~v~v~d~~~~~~~~~~~~------------------------g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~ 278 (432)
T d1qksa2 223 TAANARNKLVVIDTKEGKLVAIEDT------------------------GGQTPHPGRGANFVHPTFGPVWATSHMGDDS 278 (432)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEEEC------------------------SSSSBCCTTCEEEEETTTEEEEEEEBSSSSE
T ss_pred EECCCCCEEEEEECCCCEEEEEECC------------------------CCCCCCCCCCCCEECCCCCCEECCCCCCCCE
T ss_conf 9516663677761445268887214------------------------8622456766410148988310213568835
Q ss_pred EEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEE
Q ss_conf 99998899945899807998849999903999499999589929999689992289986067525799994799999999
Q 000268 564 ICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILS 643 (1757)
Q Consensus 564 I~IWDl~tgkli~tL~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDi~tg~~i~~l~~~~~~ItslafSPDG~~LAsg 643 (1757)
|.+|...... +..|...+....++| ++..+++++.+...++|....... +......+++ ||++.|+++
T Consensus 279 v~~~~~~~~~----~~~~~~~v~~~~~~~-~g~~~~~~s~p~~~~lw~~~~~~~------~~~~~~sv~v-pDg~~la~~ 346 (432)
T d1qksa2 279 VALIGTDPEG----HPDNAWKILDSFPAL-GGGSLFIKTHPNSQYLYVDATLNP------EAEISGSVAV-FDIKAMTGD 346 (432)
T ss_dssp EEEEECCTTT----CTTTBTSEEEEEECS-CSCCCCEECCTTCSEEEEECTTCS------SHHHHTCEEE-EEGGGCCCS
T ss_pred EEECCCCCCC----CCCCCCEEEEEEECC-CCCEEEEEECCCCCCEEECCCCCC------CCCEEEEEEE-EECHHHCCC
T ss_conf 8762456655----546565777998868-997688872688641021126788------8770359999-962461045
Q ss_pred ECCCEEEEEECCCCCCCCCCCCCEEECCCCCCEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCC
Q ss_conf 57970999998998311354321122179850788147863312321146768878756578988899952001010016
Q 000268 644 DDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRL 723 (1757)
Q Consensus 644 s~DG~I~IWdl~sGe~~~~~~~~~~fs~D~r~Li~d~~g~vlD~~tql~p~l~~l~~~L~D~~~~p~p~~~q~l~~~r~~ 723 (1757)
+.|+.+.+|++.++..+. .+..
T Consensus 347 s~d~~~k~w~~~~~~~l~----------------------------------------------------------~~~~ 368 (432)
T d1qksa2 347 GSDPEFKTLPIAEWAGIT----------------------------------------------------------EGQP 368 (432)
T ss_dssp SSCCCEEEECHHHHHTCC----------------------------------------------------------SSCC
T ss_pred CCCCCEEECCCCCCCCCC----------------------------------------------------------CCCC
T ss_conf 567844863343444457----------------------------------------------------------8998
Q ss_pred CCCCEEECCCCCEEEEEECC--CCCCCEEEECCCCCCCC
Q ss_conf 63316987899849996189--98873684106985632
Q 000268 724 GALGIEWRPSSLKLAVGPDF--SLDQGYQLQPLADLDVM 760 (1757)
Q Consensus 724 g~~~iafSPDG~~LAvg~d~--s~~~~v~l~~l~~~~~l 760 (1757)
.+.+++|||||+++.++... ..+..+.+|+..+++..
T Consensus 369 ~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~ 407 (432)
T d1qksa2 369 RVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELK 407 (432)
T ss_dssp EEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred CEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCEEE
T ss_conf 689767989999999997048888886899999995588
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.96 E-value=2.5e-23 Score=170.64 Aligned_cols=272 Identities=13% Similarity=0.126 Sum_probs=172.6
Q ss_pred EEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEE-EEECCCEEEEEECCCCCCEEEECCCCCCEEEEEEC
Q ss_conf 99981872699992678708899806789859999957999999-98489669999789997058841778855999952
Q 000268 258 VITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVA-SASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFS 336 (1757)
Q Consensus 258 LATGS~DGtIkIWDi~tg~~l~tL~gHs~~VtsIafSPDg~lLA-SgS~DGtIrIWDl~tg~~i~~l~gH~~~VtsIafS 336 (1757)
.++++.|++|.+||+.+++.++++... ..+..++|+|||++|+ +++.++.|++||+.+++.+..+..+. .+..++|+
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~ 82 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVS 82 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEEC
T ss_pred EEEECCCCEEEEEECCCCEEEEEEECC-CCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEEEECCC-CCCCCCCC
T ss_conf 999789998999999999599999889-9836999928989999997899989999999894103200024-64311000
Q ss_pred CCCCCEEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEE-EECCCE
Q ss_conf 7999507999992899199994678976552523799963248888888889999964389998779988999-508950
Q 000268 337 PRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT-GSSDTL 415 (1757)
Q Consensus 337 Pdg~~~~~LvSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sIafSpdG~~Las-Gs~DG~ 415 (1757)
+++. ..++++..++.+.+|+..++.....+. ....+.+++|+|++..+++ +..++.
T Consensus 83 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~dg~~~~~~~~~~~~ 139 (301)
T d1l0qa2 83 PDGK--QVYVTNMASSTLSVIDTTSNTVAGTVK---------------------TGKSPLGLALSPDGKKLYVTNNGDKT 139 (301)
T ss_dssp TTSS--EEEEEETTTTEEEEEETTTTEEEEEEE---------------------CSSSEEEEEECTTSSEEEEEETTTTE
T ss_pred CCCC--CCCCCCCCCCEEEECCCCCCEEEEECC---------------------CCCCCEEEEEECCCCEEEEEECCCCC
T ss_conf 1111--111111111001100124302432024---------------------44442378760589715542011110
Q ss_pred EEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEE
Q ss_conf 99963899999899999840233037788800799826762233334568878888755455557870899818990999
Q 000268 416 ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAII 495 (1757)
Q Consensus 416 IrIWDi~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~I 495 (1757)
+.+|+..+. .....+.. ..
T Consensus 140 ~~~~~~~~~---------~~~~~~~~-~~--------------------------------------------------- 158 (301)
T d1l0qa2 140 VSVINTVTK---------AVINTVSV-GR--------------------------------------------------- 158 (301)
T ss_dssp EEEEETTTT---------EEEEEEEC-CS---------------------------------------------------
T ss_pred EEEEECCCC---------CEEEECCC-CC---------------------------------------------------
T ss_conf 011000146---------30353156-78---------------------------------------------------
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECC-CEEEEEECCCCCE
Q ss_conf 927888888522221122235699999999999999931104899971299985799799999539-8399998899945
Q 000268 496 WIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD-CRICVWNAADGSL 574 (1757)
Q Consensus 496 WDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LvSGs~D-G~I~IWDl~tgkl 574 (1757)
.+..+++++++..++++..+ +.+.+|+......
T Consensus 159 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (301)
T d1l0qa2 159 ----------------------------------------------SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV 192 (301)
T ss_dssp ----------------------------------------------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred ----------------------------------------------CCEEEEEECCCCCEEEECCCCCCCCCCCCCCEEE
T ss_conf ----------------------------------------------8428886046540131012111111111110001
Q ss_pred EEEEECCCCCEEEEEEECCCCCEEEEE--ECCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEE-EEECCCEEEE
Q ss_conf 899807998849999903999499999--5899299996899922899860675257999947999999-9957970999
Q 000268 575 VHSLTGHTESTYVLDVHPFNPRIAMSA--GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASII-LSDDVGQLYI 651 (1757)
Q Consensus 575 i~tL~gH~~~VtsIafSPdd~~lLaSg--s~DG~IrIWDi~tg~~i~~l~~~~~~ItslafSPDG~~LA-sgs~DG~I~I 651 (1757)
...+..+ ..+..+++++++..+++++ ..++.|.+||+.+++.+..+.. ...+..++|+|||++|+ ++..++.|.+
T Consensus 193 ~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v 270 (301)
T d1l0qa2 193 IDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSV 270 (301)
T ss_dssp EEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EECCCCC-CCCCEEECCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEECC-CCCEEEEEEECCCCEEEEEECCCCEEEE
T ss_conf 1101335-7750311011110111100210000232365699819999848-9987799991898999999899996999
Q ss_pred EECCCCCCCCCC
Q ss_conf 998998311354
Q 000268 652 LNTGQGESQKDA 663 (1757)
Q Consensus 652 Wdl~sGe~~~~~ 663 (1757)
||+.+++.++.+
T Consensus 271 ~D~~t~~~~~~~ 282 (301)
T d1l0qa2 271 IDTATNTITATM 282 (301)
T ss_dssp EETTTTEEEEEE
T ss_pred EECCCCEEEEEE
T ss_conf 999999599999
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.95 E-value=5e-25 Score=182.25 Aligned_cols=308 Identities=11% Similarity=0.025 Sum_probs=220.5
Q ss_pred EEECCCCCEEEEECCCCEEEEEECCCCEEEEEEEC-CCCCEEEEEECCCCCEE-EEEECCCEEEEEECCCCCCEEEECCC
Q ss_conf 99979999999981872699992678708899806-78985999995799999-99848966999978999705884177
Q 000268 249 AIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRG-HEGDITDLAVSSNNALV-ASASNDCIIRVWRLPDGLPISVLRGH 326 (1757)
Q Consensus 249 IaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~g-Hs~~VtsIafSPDg~lL-ASgS~DGtIrIWDl~tg~~i~~l~gH 326 (1757)
++|++++++|++++.++.|.+||+.+++++.++.. +...+.+++|+|||+++ +++..++.|.+||+.+++.+..+...
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~ 81 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 81 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred CCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCC
T ss_conf 55889996999986999799999999989999994899970459997898999999789993999967567131231036
Q ss_pred C------CCEEEEEECCCCCCEEEEEEEE------------CCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 8------8559999527999507999992------------899199994678976552523799963248888888889
Q 000268 327 T------AAVTAIAFSPRPGSVYQLLSSS------------DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 388 (1757)
Q Consensus 327 ~------~~VtsIafSPdg~~~~~LvSgs------------~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~ 388 (1757)
. ..+..++|+|+++ ++++++ .++.+.+|+..++.....+...
T Consensus 82 ~~~~~~~~~~~~v~~s~DG~---~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------------- 141 (346)
T d1jmxb_ 82 SVPGEVGRSMYSFAISPDGK---EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF----------------- 141 (346)
T ss_dssp CSTTEEEECSSCEEECTTSS---EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-----------------
T ss_pred CCCCCCCCCEEEEEEECCCC---EEEEEECCCCCEEEEECCCCCEEEEEECCCCEEEEEEEEE-----------------
T ss_conf 54345477417999905888---8999705775215651467624899852563265688731-----------------
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 99996438999877998899950895099963899999899999840233037788800799826762233334568878
Q 000268 389 GPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 468 (1757)
Q Consensus 389 ~~~~~~V~sIafSpdG~~LasGs~DG~IrIWDi~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~~ 468 (1757)
.....+..+.+++++.+++.+ +.+.+|++.++ ..+..+..+ .....+.++|++
T Consensus 142 -~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---------~~~~~~~~~-~~~~~~~~~~~~------------- 194 (346)
T d1jmxb_ 142 -PMPRQVYLMRAADDGSLYVAG---PDIYKMDVKTG---------KYTVALPLR-NWNRKGYSAPDV------------- 194 (346)
T ss_dssp -ECCSSCCCEEECTTSCEEEES---SSEEEECTTTC---------CEEEEECST-TCCCTTBCCCBC-------------
T ss_pred -ECCCCEEEEEECCCCEEEEEC---CCCEEEECCCC---------CEEEEEECC-CCCCCEEEECCC-------------
T ss_conf -024743999952787899847---96269980699---------789999648-986623771255-------------
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEE
Q ss_conf 88875545555787089981899099992788888852222112223569999999999999993110489997129998
Q 000268 469 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 548 (1757)
Q Consensus 469 ~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIaf 548 (1757)
...++....++.+.+++.. ..+
T Consensus 195 ------------~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~ 216 (346)
T d1jmxb_ 195 ------------LYFWPHQSPRHEFSMLYTI----------------------------------------------ARF 216 (346)
T ss_dssp ------------CCCCCCCCTTCEEEEEEEE----------------------------------------------EEC
T ss_pred ------------CEEEEEECCCCCEEEEEEE----------------------------------------------EEE
T ss_conf ------------2899986499816765123----------------------------------------------111
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEE-EEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCC
Q ss_conf 5799799999539839999889994589-980799884999990399949999958992999968999228998606752
Q 000268 549 SLDNRFVLAAIMDCRICVWNAADGSLVH-SLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFR 627 (1757)
Q Consensus 549 SPDG~~LvSGs~DG~I~IWDl~tgkli~-tL~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDi~tg~~i~~l~~~~~~ 627 (1757)
......++++..+..+.+|+..++.... .+..+...+..+.+++++..++ ... ++.|.+||+.+++.+..+. ....
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~v~v~d~~~~~~~~~~~-~~~~ 293 (346)
T d1jmxb_ 217 KDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQI-YGV-LNRLAKYDLKQRKLIKAAN-LDHT 293 (346)
T ss_dssp -------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEE-EEE-ESEEEEEETTTTEEEEEEE-CSSC
T ss_pred CCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEE-EEC-CCEEEEEECCCCCEEEEEC-CCCC
T ss_conf 267325754047834999977788368787631566068889717997899-942-9838999899993999974-9997
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCC
Q ss_conf 5799994799999999579709999989983113543
Q 000268 628 LVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAK 664 (1757)
Q Consensus 628 ItslafSPDG~~LAsgs~DG~I~IWdl~sGe~~~~~~ 664 (1757)
+.+++|||||++|++++.+|.|.+||+.+++.++.+.
T Consensus 294 ~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~ 330 (346)
T d1jmxb_ 294 YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330 (346)
T ss_dssp CCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE
T ss_conf 7899996899999999489929999996587979998
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.95 E-value=4.8e-24 Score=175.52 Aligned_cols=296 Identities=12% Similarity=0.047 Sum_probs=206.6
Q ss_pred CEEEEECCCCEEEEEECCCCEEEEEEECC--CCCEEEEEECCCCCEE-EEEECCCEEEEEECCCCCCEEEECCCCC----
Q ss_conf 99999818726999926787088998067--8985999995799999-9984896699997899970588417788----
Q 000268 256 RYVITGSDDRLVKIWSMETAYCLASCRGH--EGDITDLAVSSNNALV-ASASNDCIIRVWRLPDGLPISVLRGHTA---- 328 (1757)
Q Consensus 256 ~~LATGS~DGtIkIWDi~tg~~l~tL~gH--s~~VtsIafSPDg~lL-ASgS~DGtIrIWDl~tg~~i~~l~gH~~---- 328 (1757)
++|++++.|+.|.|||+.+++++.++..+ ...+.+++|+|||++| ++++.++.|.+||+.+++.+..+..+..
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~ 81 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred EEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCC
T ss_conf 69999767998999999999499999877889982379999998999999789994999999999298887247773125
Q ss_pred -CEEEEEECCCCCCEEEEEEEE------------CCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf -559999527999507999992------------8991999946789765525237999632488888888899999643
Q 000268 329 -AVTAIAFSPRPGSVYQLLSSS------------DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 395 (1757)
Q Consensus 329 -~VtsIafSPdg~~~~~LvSgs------------~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V 395 (1757)
.+..++|+|+++ +++++. .+..+.+||..++.....+. ....+
T Consensus 82 ~~~~~v~~s~dg~---~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---------------------~~~~~ 137 (337)
T d1pbyb_ 82 KSLFGAALSPDGK---TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE---------------------APRQI 137 (337)
T ss_dssp ECTTCEEECTTSS---EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE---------------------CCSSC
T ss_pred CCEEEEEECCCCC---EEEEEECCCCCEEEECCCCCCCEEECCCCCCEEEEECC---------------------CCCCC
T ss_conf 4025489868775---79995047762034203455521203566775988414---------------------56872
Q ss_pred EEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89998779988999508950999638999998999998402330377888007998267622333345688788887554
Q 000268 396 FCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475 (1757)
Q Consensus 396 ~sIafSpdG~~LasGs~DG~IrIWDi~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~~~ 475 (1757)
.+++|+++|.++++++.+ +.+|+..+ ......+..+.. .....+.+++.
T Consensus 138 ~~~~~s~dg~~l~~~~~~--~~~~d~~~---------~~~~~~~~~~~~-~~~~~~~~~~~------------------- 186 (337)
T d1pbyb_ 138 TMLAWARDGSKLYGLGRD--LHVMDPEA---------GTLVEDKPIQSW-EAETYAQPDVL------------------- 186 (337)
T ss_dssp CCEEECTTSSCEEEESSS--EEEEETTT---------TEEEEEECSTTT-TTTTBCCCBCC-------------------
T ss_pred EEEEECCCCCEEEEECCC--CCEEEEEC---------CCEEEEEECCCC-CCCCEECCCCC-------------------
T ss_conf 189986888889997177--50566303---------727888614775-43311357763-------------------
Q ss_pred CCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCEE
Q ss_conf 55557870899818990999927888888522221122235699999999999999931104899971299985799799
Q 000268 476 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFV 555 (1757)
Q Consensus 476 ~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~L 555 (1757)
.....+...+...++. .....+...+
T Consensus 187 ------~~~~~~~~~~~~~~~~------------------------------------------------~~~~~~~~~~ 212 (337)
T d1pbyb_ 187 ------AVWNQHESSGVMATPF------------------------------------------------YTARKDIDPA 212 (337)
T ss_dssp ------CCCCCCTTTTEEEEEE------------------------------------------------EEEBTTSCTT
T ss_pred ------EEECCCCCCCEEEEEE------------------------------------------------EEEEECCCEE
T ss_conf ------1401466531246632------------------------------------------------4441036604
Q ss_pred EEEECCCEEEEEECCCCCEEE-EEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEEEEC
Q ss_conf 999539839999889994589-9807998849999903999499999589929999689992289986067525799994
Q 000268 556 LAAIMDCRICVWNAADGSLVH-SLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFS 634 (1757)
Q Consensus 556 vSGs~DG~I~IWDl~tgkli~-tL~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDi~tg~~i~~l~~~~~~ItslafS 634 (1757)
..+..++.+.+|+..++.... .+..+...+..+.++| +..+++.+ ++.|++||+.+++.+..+. +...+.+++|+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s 288 (337)
T d1pbyb_ 213 DPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP-AKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVS 288 (337)
T ss_dssp SGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECT-TSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEEC
T ss_pred EECCCCCCEEEEECCCCCEEEEEECCCCCCEEEEEECC-CCEEEEEC--CCCEEEEECCCCCEEEEEC-CCCCEEEEEEC
T ss_conf 54036761799986888588898328875058887426-61399973--5528999898896999974-89988999997
Q ss_pred CCCCEEEEEECCCEEEEEECCCCCCCCCCC
Q ss_conf 799999999579709999989983113543
Q 000268 635 PDGASIILSDDVGQLYILNTGQGESQKDAK 664 (1757)
Q Consensus 635 PDG~~LAsgs~DG~I~IWdl~sGe~~~~~~ 664 (1757)
|||++|++++.+|.|.+||+.+++.++.++
T Consensus 289 ~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~ 318 (337)
T d1pbyb_ 289 TDGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp TTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred CCCCEEEEEECCCCEEEEECCCCCEEEEEE
T ss_conf 899999999499929999999876989998
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.94 E-value=2.5e-22 Score=163.78 Aligned_cols=200 Identities=11% Similarity=-0.049 Sum_probs=138.7
Q ss_pred ECCCCCCEEEEEECCCCCEEEEE-----CCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE---------
Q ss_conf 81679878999997999999998-----1872699992678708899806789859999957999999984---------
Q 000268 239 VRGHRNAVYCAIFDRSGRYVITG-----SDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS--------- 304 (1757)
Q Consensus 239 L~GH~~~V~sIaFSPDG~~LATG-----S~DGtIkIWDi~tg~~l~tL~gHs~~VtsIafSPDg~lLASgS--------- 304 (1757)
..++.+++.+++++|||++++.. +..+.|.+||..+++.+.++..+... .++|+|||++|++++
T Consensus 16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~ 93 (373)
T d2madh_ 16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKG 93 (373)
T ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCCCCEEEEEEECCCCCCCC
T ss_conf 456789865630189997899973422578765999989999799999579886--079868999899996057753212
Q ss_pred -CCCEEEEEECCCCCCEEEECCCCCCE-------EEEEECCCCCCEEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCC
Q ss_conf -89669999789997058841778855-------9999527999507999992899199994678976552523799963
Q 000268 305 -NDCIIRVWRLPDGLPISVLRGHTAAV-------TAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDA 376 (1757)
Q Consensus 305 -~DGtIrIWDl~tg~~i~~l~gH~~~V-------tsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~ 376 (1757)
.++.|.+||+.+++.+..+..+.... ..+.|+++++.. ++.....++.+.+|+....+.....
T Consensus 94 ~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~-~v~~~~~~~~~~~~~~~~~~~~~~~-------- 164 (373)
T d2madh_ 94 KRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADL-LFFQFAAGPAVGLVVQGGSSDDQLL-------- 164 (373)
T ss_pred CCCEEEEEEECCCCCEEEEEECCCCCEEEECCCCCCEEEEECCCCE-EEEEECCCCCEEEEECCCCEEEEEE--------
T ss_conf 4531899997778938889726885136851689708998589937-9999869874677623687289982--------
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCCCEE-EEEECCCEEEEECCCCCCCCCCCCCCCCEEEEC------CCCCCCEEE
Q ss_conf 2488888888899999643899987799889-995089509996389999989999984023303------778880079
Q 000268 377 VAGRNMAPSSSAGPQSHQIFCCAFNANGTVF-VTGSSDTLARVWNACKPNTDDSDQPNHEIDVLS------GHENDVNYV 449 (1757)
Q Consensus 377 ~~g~~~~~~~~~~~~~~~V~sIafSpdG~~L-asGs~DG~IrIWDi~t~~~~~s~~~~~~i~~l~------gH~~~V~sI 449 (1757)
....++.+++++..+ ++.+.|+.+.+|+...... ..... +.......+
T Consensus 165 ----------------~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 219 (373)
T d2madh_ 165 ----------------SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAA---------GAGLVGAMLTAAQNLLTQPA 219 (373)
T ss_pred ----------------CCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEE---------EEEEEEECCCCCCCCEEEEE
T ss_conf ----------------45206999628991999994799399997477426---------67886300366753043458
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCC
Q ss_conf 9826762233334568878888755455557870899818990999927888
Q 000268 450 QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSR 501 (1757)
Q Consensus 450 afSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~ 501 (1757)
.+.++ ..++..+.++.+.+|+....
T Consensus 220 ~~~~~---------------------------~~~~~~~~~~~v~~~~~~~~ 244 (373)
T d2madh_ 220 QANKS---------------------------GRIVWPVYSGKILQADISAA 244 (373)
T ss_pred EECCC---------------------------CEEEEECCCCEEEEEECCCC
T ss_conf 87899---------------------------42999258965999976899
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.94 E-value=8.3e-22 Score=160.18 Aligned_cols=268 Identities=12% Similarity=0.087 Sum_probs=196.9
Q ss_pred CCCCCCCCCEEEEEECCCCCCEEEEEECCCCCEE-EEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEE-E
Q ss_conf 6762112322689981679878999997999999-9981872699992678708899806789859999957999999-9
Q 000268 225 KPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYV-ITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVA-S 302 (1757)
Q Consensus 225 ~~~~~~~~~k~i~tL~GH~~~V~sIaFSPDG~~L-ATGS~DGtIkIWDi~tg~~l~tL~gHs~~VtsIafSPDg~lLA-S 302 (1757)
+..++..+++.++++... .....++|+|||++| ++++.++.|.+||+.+++.+.++..+. .+..++|++++..++ +
T Consensus 14 v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 91 (301)
T d1l0qa2 14 ISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVT 91 (301)
T ss_dssp EEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEE
T ss_pred EEEEECCCCEEEEEEECC-CCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEEEECCC-CCCCCCCCCCCCCCCCC
T ss_conf 999999999599999889-9836999928989999997899989999999894103200024-64311000111111111
Q ss_pred EECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 84896699997899970588417788559999527999507999992899199994678976552523799963248888
Q 000268 303 ASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 382 (1757)
Q Consensus 303 gS~DGtIrIWDl~tg~~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~ 382 (1757)
+..++.+.+|+..+++....+.. ...+.++.|+|++. ..++++..++.+.+|+..+......+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 155 (301)
T d1l0qa2 92 NMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGK--KLYVTNNGDKTVSVINTVTKAVINTVS------------- 155 (301)
T ss_dssp ETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSS--EEEEEETTTTEEEEEETTTTEEEEEEE-------------
T ss_pred CCCCCEEEECCCCCCEEEEECCC-CCCCEEEEEECCCC--EEEEEECCCCCEEEEECCCCCEEEECC-------------
T ss_conf 11110011001243024320244-44423787605897--155420111100110001463035315-------------
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCEEEEEECC-CEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCC
Q ss_conf 8888899999643899987799889995089-509996389999989999984023303778880079982676223333
Q 000268 383 APSSSAGPQSHQIFCCAFNANGTVFVTGSSD-TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFS 461 (1757)
Q Consensus 383 ~~~~~~~~~~~~V~sIafSpdG~~LasGs~D-G~IrIWDi~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~~s~~~ 461 (1757)
....+.++++++++..++++..+ +.+.+|.... ........
T Consensus 156 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~--------------------- 197 (301)
T d1l0qa2 156 --------VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT---------NSVIDTVK--------------------- 197 (301)
T ss_dssp --------CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT---------TEEEEEEE---------------------
T ss_pred --------CCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCC---------EEEEECCC---------------------
T ss_conf --------6788428886046540131012111111111110---------00111013---------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 45688788887554555578708998189909999278888885222211222356999999999999999311048999
Q 000268 462 LADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR 541 (1757)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~ 541 (1757)
...
T Consensus 198 -----------------------------------------------------------------------------~~~ 200 (301)
T d1l0qa2 198 -----------------------------------------------------------------------------VEA 200 (301)
T ss_dssp -----------------------------------------------------------------------------CSS
T ss_pred -----------------------------------------------------------------------------CCC
T ss_conf -----------------------------------------------------------------------------357
Q ss_pred CEEEEEECCCCCEEEEEEC---CCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEE
Q ss_conf 7129998579979999953---9839999889994589980799884999990399949999958992999968999228
Q 000268 542 GVNMIVWSLDNRFVLAAIM---DCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 618 (1757)
Q Consensus 542 ~VtsIafSPDG~~LvSGs~---DG~I~IWDl~tgkli~tL~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDi~tg~~i 618 (1757)
.+..++|++++..++++.. ++.|.+||+.+++++..+..+ ..+.+++|+|++..++++++.|+.|.+||+.+++++
T Consensus 201 ~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~ 279 (301)
T d1l0qa2 201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTIT 279 (301)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCCEEECCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEECCC-CCEEEEEEECCCCEEEEEECCCCEEEEEECCCCEEE
T ss_conf 7503110111101111002100002323656998199998489-987799991898999999899996999999999599
Q ss_pred EEEEECCC
Q ss_conf 99860675
Q 000268 619 RIYEISRF 626 (1757)
Q Consensus 619 ~~l~~~~~ 626 (1757)
.++..+..
T Consensus 280 ~~~~vg~~ 287 (301)
T d1l0qa2 280 ATMAVGKN 287 (301)
T ss_dssp EEEECSSS
T ss_pred EEEECCCC
T ss_conf 99968999
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.91 E-value=9.9e-21 Score=152.80 Aligned_cols=293 Identities=9% Similarity=-0.040 Sum_probs=192.5
Q ss_pred HCCCCCCCCCCCCCCEEEEEECCC--CCCEEEEEECCCCCEE-EEECCCCEEEEEECCCCEEEEEEECCCC-----CEEE
Q ss_conf 101334676211232268998167--9878999997999999-9981872699992678708899806789-----8599
Q 000268 219 ACYAIAKPSTMVQKMQNIKRVRGH--RNAVYCAIFDRSGRYV-ITGSDDRLVKIWSMETAYCLASCRGHEG-----DITD 290 (1757)
Q Consensus 219 ~~~~~~~~~~~~~~~k~i~tL~GH--~~~V~sIaFSPDG~~L-ATGS~DGtIkIWDi~tg~~l~tL~gHs~-----~Vts 290 (1757)
+........|+.++.+.++++..+ ...+.+++|+|||++| ++++.++.|.+||+.+++.+..+..+.. .+..
T Consensus 7 ~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~ 86 (337)
T d1pbyb_ 7 PARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFG 86 (337)
T ss_dssp EETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTC
T ss_pred ECCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEE
T ss_conf 76799899999999949999987788998237999999899999978999499999999929888724777312540254
Q ss_pred EEECCCCCEEEEEE------------CCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEE
Q ss_conf 99957999999984------------896699997899970588417788559999527999507999992899199994
Q 000268 291 LAVSSNNALVASAS------------NDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358 (1757)
Q Consensus 291 IafSPDg~lLASgS------------~DGtIrIWDl~tg~~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWD 358 (1757)
++|+|++++++++. .+..+.+|+..++..+..+.. ...+.+++|+|++. ++++++. .+.+||
T Consensus 87 v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~---~l~~~~~--~~~~~d 160 (337)
T d1pbyb_ 87 AALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGS---KLYGLGR--DLHVMD 160 (337)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSS---CEEEESS--SEEEEE
T ss_pred EEECCCCCEEEEEECCCCCEEEECCCCCCCEEECCCCCCEEEEECCC-CCCCEEEEECCCCC---EEEEECC--CCCEEE
T ss_conf 89868775799950477620342034555212035667759884145-68721899868888---8999717--750566
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEE-CCCEEEEECCCCCCCCCCCCCCCCEE
Q ss_conf 67897655252379996324888888888999996438999877998899950-89509996389999989999984023
Q 000268 359 ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS-SDTLARVWNACKPNTDDSDQPNHEID 437 (1757)
Q Consensus 359 l~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sIafSpdG~~LasGs-~DG~IrIWDi~t~~~~~s~~~~~~i~ 437 (1757)
..++.....+..... .....+.+++..+.... ..+.+.++..
T Consensus 161 ~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 203 (337)
T d1pbyb_ 161 PEAGTLVEDKPIQSW---------------------EAETYAQPDVLAVWNQHESSGVMATPFY---------------- 203 (337)
T ss_dssp TTTTEEEEEECSTTT---------------------TTTTBCCCBCCCCCCCCTTTTEEEEEEE----------------
T ss_pred EECCCEEEEEECCCC---------------------CCCCEECCCCCEEECCCCCCCEEEEEEE----------------
T ss_conf 303727888614775---------------------4331135776314014665312466324----------------
Q ss_pred EECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 30377888007998267622333345688788887554555578708998189909999278888885222211222356
Q 000268 438 VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLK 517 (1757)
Q Consensus 438 ~l~gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~ 517 (1757)
..... ...+..+..++.+.+|+..++..
T Consensus 204 ------------~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~-------------- 231 (337)
T d1pbyb_ 204 ------------TARKD--------------------------IDPADPTAYRTGLLTMDLETGEM-------------- 231 (337)
T ss_dssp ------------EEBTT--------------------------SCTTSGGGEEEEEEEEETTTCCE--------------
T ss_pred ------------EEEEC--------------------------CCEEEECCCCCCEEEEECCCCCE--------------
T ss_conf ------------44103--------------------------66045403676179998688858--------------
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCE
Q ss_conf 99999999999999931104899971299985799799999539839999889994589980799884999990399949
Q 000268 518 VPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRI 597 (1757)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LvSGs~DG~I~IWDl~tgkli~tL~gH~~~VtsIafSPdd~~l 597 (1757)
.......+...+..+.+++++.+++.+ ++.|++||+.+++.+..+. +...+.+++|+| +++.
T Consensus 232 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dG~~ 293 (337)
T d1pbyb_ 232 --------------AMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVST-DGST 293 (337)
T ss_dssp --------------EEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSCE
T ss_pred --------------EEEEECCCCCCEEEEEECCCCEEEEEC--CCCEEEEECCCCCEEEEEC-CCCCEEEEEECC-CCCE
T ss_conf --------------889832887505888742661399973--5528999898896999974-899889999978-9999
Q ss_pred EEEEECCCCEEEEECCCCCEEEEEEEC
Q ss_conf 999958992999968999228998606
Q 000268 598 AMSAGYDGKTIVWDIWEGIPIRIYEIS 624 (1757)
Q Consensus 598 LaSgs~DG~IrIWDi~tg~~i~~l~~~ 624 (1757)
|++++.|+.|+|||+.+++.+..+...
T Consensus 294 l~v~~~~~~i~v~D~~t~~~v~~i~~~ 320 (337)
T d1pbyb_ 294 VWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp EEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred EEEEECCCCEEEEECCCCCEEEEEECC
T ss_conf 999949992999999987698999889
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.90 E-value=3.6e-21 Score=155.85 Aligned_cols=316 Identities=12% Similarity=-0.003 Sum_probs=181.6
Q ss_pred CEEEEEECCCCCEEEEEC-----CCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE----------CCCEE
Q ss_conf 789999979999999981-----872699992678708899806789859999957999999984----------89669
Q 000268 245 AVYCAIFDRSGRYVITGS-----DDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS----------NDCII 309 (1757)
Q Consensus 245 ~V~sIaFSPDG~~LATGS-----~DGtIkIWDi~tg~~l~tL~gHs~~VtsIafSPDg~lLASgS----------~DGtI 309 (1757)
++.-.+.+|||++++... .+..|.+||..+++.+.++..+... .++|+||+++|++.+ .++.|
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v 80 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYV 80 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCCCCEEEEEECCCCCCCCCCCCCEE
T ss_conf 717476589999999982664777671999999999499999899998--569948999999996777642015899989
Q ss_pred EEEECCCCCCEEEECCCC-------CCEEEEEECCCCCCEEEEEEE--ECCCCEEEEECCCCCCCCEEECCCCCCCCCCC
Q ss_conf 999789997058841778-------855999952799950799999--28991999946789765525237999632488
Q 000268 310 RVWRLPDGLPISVLRGHT-------AAVTAIAFSPRPGSVYQLLSS--SDDGTCRIWDARYSQFSPRIYIPRPSDAVAGR 380 (1757)
Q Consensus 310 rIWDl~tg~~i~~l~gH~-------~~VtsIafSPdg~~~~~LvSg--s~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~ 380 (1757)
++||+.+++.+..+..+. .....++|++++. .++.+ +.+..+.+|+..++.....+.........
T Consensus 81 ~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 154 (355)
T d2bbkh_ 81 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK---TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIF--- 154 (355)
T ss_dssp EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS---EEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEE---
T ss_pred EEEECCCCCEEEEEECCCCCEEECCCCCCEEEEECCCC---EEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEE---
T ss_conf 99999999798898058864031179873499933887---157732798820454305788376677058740473---
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCEEEEEE-CCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCC
Q ss_conf 8888888999996438999877998899950-895099963899999899999840233037788800799826762233
Q 000268 381 NMAPSSSAGPQSHQIFCCAFNANGTVFVTGS-SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASR 459 (1757)
Q Consensus 381 ~~~~~~~~~~~~~~V~sIafSpdG~~LasGs-~DG~IrIWDi~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~~s~ 459 (1757)
.......+.+++++..++... .++.+.+++..... ..+...+....+.+.+
T Consensus 155 ----------~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~---- 206 (355)
T d2bbkh_ 155 ----------PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH--------------PEDEFLINHPAYSQKA---- 206 (355)
T ss_dssp ----------EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS--------------CTTSCBCSCCEEETTT----
T ss_pred ----------ECCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCC--------------CEECCEEEECCCCCCC----
T ss_conf ----------069963699938999899983478737999624333--------------0001106102153899----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 33456887888875545555787089981899099992788888852222112223569999999999999993110489
Q 000268 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT 539 (1757)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h 539 (1757)
..++.++.++.+.+|++..+........... ..........
T Consensus 207 ----------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~ 247 (355)
T d2bbkh_ 207 ----------------------GRLVWPTYTGKIHQIDLSSGDAKFLPAVEAL-----------------TEAERADGWR 247 (355)
T ss_dssp ----------------------TEEEEEBTTSEEEEEECTTSSCEECCCEESS-----------------CHHHHHTTEE
T ss_pred ----------------------CEEEEECCCCEEEEEECCCCCEEEEECCCCC-----------------CCCEEEEEEE
T ss_conf ----------------------7388746998299996589907998445784-----------------4126854330
Q ss_pred CCCEEEEEECCCCCEEEEEECC----------CEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCC-EEEEEECCCCEE
Q ss_conf 9971299985799799999539----------83999988999458998079988499999039994-999995899299
Q 000268 540 PRGVNMIVWSLDNRFVLAAIMD----------CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR-IAMSAGYDGKTI 608 (1757)
Q Consensus 540 ~~~VtsIafSPDG~~LvSGs~D----------G~I~IWDl~tgkli~tL~gH~~~VtsIafSPdd~~-lLaSgs~DG~Ir 608 (1757)
......+++++++..++....+ ..|.+||..+++.+..+.. ...+.+++|+|++.. ++++++.|+.|.
T Consensus 248 p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~ 326 (355)
T d2bbkh_ 248 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLY 326 (355)
T ss_dssp ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEE
T ss_pred CCCEEEEEEECCCCEEEEEECCCCCEEECCCCCEEEEEECCCCCEEEEECC-CCCEEEEEECCCCCEEEEEEECCCCEEE
T ss_conf 351089998079976788740687126517997599986788849899668-9987799992899969999978999899
Q ss_pred EEECCCCCEEEEEEECCCCEEEEEECCC
Q ss_conf 9968999228998606752579999479
Q 000268 609 VWDIWEGIPIRIYEISRFRLVDGKFSPD 636 (1757)
Q Consensus 609 IWDi~tg~~i~~l~~~~~~ItslafSPD 636 (1757)
+||+.+++.++++.........+.+.++
T Consensus 327 v~D~~tg~~~~~i~~~G~~p~~i~~~d~ 354 (355)
T d2bbkh_ 327 IHDAESGEELRSVNQLGHGPQVITTADM 354 (355)
T ss_dssp EEETTTCCEEEEECCCCSSCCEEECCCC
T ss_pred EEECCCCCEEEEEECCCCCCCEEEECCC
T ss_conf 9999999899999286979658996999
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.89 E-value=4.6e-21 Score=155.10 Aligned_cols=308 Identities=9% Similarity=0.002 Sum_probs=151.7
Q ss_pred EEECCCCCEEEEEECCCEEEEEECCCCCCEEEEC-CCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECCCCCCCCEEE
Q ss_conf 9995799999998489669999789997058841-778855999952799950799999289919999467897655252
Q 000268 291 LAVSSNNALVASASNDCIIRVWRLPDGLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIY 369 (1757)
Q Consensus 291 IafSPDg~lLASgS~DGtIrIWDl~tg~~i~~l~-gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~~~~i~ 369 (1757)
++|++++++|++++.++.|.+||+.+++.+.++. .+...+.+++|+||++ +.++++..++.|.+||+.+++....+.
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~--~l~v~~~~~~~v~~~d~~t~~~~~~~~ 79 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNR--TAYVLNNHYGDIYGIDLDTCKNTFHAN 79 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSS--EEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred CCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCEEEECCCCC--EEEEEECCCCCEEEEECCCCEEEEEEC
T ss_conf 558899969999869997999999999899999948999704599978989--999997899939999675671312310
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEC------------CCEEEEECCCCCCCCCCCCCCCCEE
Q ss_conf 3799963248888888889999964389998779988999508------------9509996389999989999984023
Q 000268 370 IPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS------------DTLARVWNACKPNTDDSDQPNHEID 437 (1757)
Q Consensus 370 l~~~~~~~~g~~~~~~~~~~~~~~~V~sIafSpdG~~LasGs~------------DG~IrIWDi~t~~~~~s~~~~~~i~ 437 (1757)
...... .....+..++|+|||++++++.. ++.+.+|+..++. ...
T Consensus 80 ~~~~~~--------------~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~~ 136 (346)
T d1jmxb_ 80 LSSVPG--------------EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL---------EAK 136 (346)
T ss_dssp SCCSTT--------------EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG---------GBC
T ss_pred CCCCCC--------------CCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCE---------EEE
T ss_conf 365434--------------547741799990588889997057752156514676248998525632---------656
Q ss_pred EECC--CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 3037--78880079982676223333456887888875545555787089981899099992788888852222112223
Q 000268 438 VLSG--HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYH 515 (1757)
Q Consensus 438 ~l~g--H~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~ 515 (1757)
.+.. ....+..+.+++++ .++..+ +.+.+|++.+.+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~--~~~~~~~~~~~~~------------ 175 (346)
T d1jmxb_ 137 PVRTFPMPRQVYLMRAADDG---------------------------SLYVAG--PDIYKMDVKTGKY------------ 175 (346)
T ss_dssp CSEEEECCSSCCCEEECTTS---------------------------CEEEES--SSEEEECTTTCCE------------
T ss_pred EEEEEECCCCEEEEEECCCC---------------------------EEEEEC--CCCEEEECCCCCE------------
T ss_conf 88731024743999952787---------------------------899847--9626998069978------------
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEE-CCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCC
Q ss_conf 56999999999999999311048999712999857997999995-39839999889994589980799884999990399
Q 000268 516 LKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFN 594 (1757)
Q Consensus 516 l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LvSGs-~DG~I~IWDl~tgkli~tL~gH~~~VtsIafSPdd 594 (1757)
............+.++|++..++... .++.+.+++. ...+.+ .
T Consensus 176 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~-~ 219 (346)
T d1jmxb_ 176 ------------------TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYT-----------------IARFKD-D 219 (346)
T ss_dssp ------------------EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEE-----------------EEEC----
T ss_pred ------------------EEEEECCCCCCCEEEECCCCEEEEEECCCCCEEEEEE-----------------EEEECC-C
T ss_conf ------------------9999648986623771255289998649981676512-----------------311126-7
Q ss_pred CCEEEEEECCCCEEEEECCCCCEEEEE-EECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCEEECCCC
Q ss_conf 949999958992999968999228998-6067525799994799999999579709999989983113543211221798
Q 000268 595 PRIAMSAGYDGKTIVWDIWEGIPIRIY-EISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDY 673 (1757)
Q Consensus 595 ~~lLaSgs~DG~IrIWDi~tg~~i~~l-~~~~~~ItslafSPDG~~LAsgs~DG~I~IWdl~sGe~~~~~~~~~~fs~D~ 673 (1757)
...++++..+..+.+|++.++...... ..+...+..+.+++++.+++.... +.|.+|+..+++.+.....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~-------- 290 (346)
T d1jmxb_ 220 KQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANL-------- 290 (346)
T ss_dssp ----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEEC--------
T ss_pred CEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECC-CEEEEEECCCCCEEEEECC--------
T ss_conf 3257540478349999777883687876315660688897179978999429-8389998999939999749--------
Q ss_pred CCEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCEEEEEECCCCCCCEEEEC
Q ss_conf 50788147863312321146768878756578988899952001010016633169878998499961899887368410
Q 000268 674 RPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQP 753 (1757)
Q Consensus 674 r~Li~d~~g~vlD~~tql~p~l~~l~~~L~D~~~~p~p~~~q~l~~~r~~g~~~iafSPDG~~LAvg~d~s~~~~v~l~~ 753 (1757)
...+.+++|||||++|+++ +.+..+.+|+
T Consensus 291 ------------------------------------------------~~~~~~va~s~DG~~l~v~---~~d~~v~v~D 319 (346)
T d1jmxb_ 291 ------------------------------------------------DHTYYCVAFDKKGDKLYLG---GTFNDLAVFN 319 (346)
T ss_dssp ------------------------------------------------SSCCCEEEECSSSSCEEEE---SBSSEEEEEE
T ss_pred ------------------------------------------------CCCEEEEEECCCCCEEEEE---ECCCCEEEEE
T ss_conf ------------------------------------------------9977899996899999999---4899299999
Q ss_pred CCCCCCC
Q ss_conf 6985632
Q 000268 754 LADLDVM 760 (1757)
Q Consensus 754 l~~~~~l 760 (1757)
+.+++.+
T Consensus 320 ~~t~~~i 326 (346)
T d1jmxb_ 320 PDTLEKV 326 (346)
T ss_dssp TTTTEEE
T ss_pred CCCCCEE
T ss_conf 9658797
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.89 E-value=6e-19 Score=140.61 Aligned_cols=301 Identities=9% Similarity=-0.072 Sum_probs=183.4
Q ss_pred CCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEC----------CCCEEEEEECCCCEEEEEEECCCCCE-------EE
Q ss_conf 21123226899816798789999979999999981----------87269999267870889980678985-------99
Q 000268 228 TMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGS----------DDRLVKIWSMETAYCLASCRGHEGDI-------TD 290 (1757)
Q Consensus 228 ~~~~~~k~i~tL~GH~~~V~sIaFSPDG~~LATGS----------~DGtIkIWDi~tg~~l~tL~gHs~~V-------ts 290 (1757)
++..+.+.+.++.++... .++|+|||++|++++ .++.|.+||..+++.+..+..+.... ..
T Consensus 52 ~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~ 129 (373)
T d2madh_ 52 LDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWM 129 (373)
T ss_pred EECCCCCEEEEEECCCCC--CEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEECCCCCC
T ss_conf 989999799999579886--079868999899996057753212453189999777893888972688513685168970
Q ss_pred EEECCCCCEEEEEE--CCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECCCCCCCCEE
Q ss_conf 99957999999984--8966999978999705884177885599995279995079999928991999946789765525
Q 000268 291 LAVSSNNALVASAS--NDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRI 368 (1757)
Q Consensus 291 IafSPDg~lLASgS--~DGtIrIWDl~tg~~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~~~~i 368 (1757)
+.|+++++.++... .++.+.+|+....+..... ....++.|+|++. ..+++.+.|+.+.+|+...+......
T Consensus 130 ~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~g~--~~~v~~~~dg~~~~~~~~~~~~~~~~ 203 (373)
T d2madh_ 130 NANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL----SSPTCYHIHPGAP--STFYLLCAQGGLAKTDHAGGAAGAGL 203 (373)
T ss_pred EEEEECCCCEEEEEECCCCCEEEEECCCCEEEEEE----CCCEEEEEECCCC--CEEEEECCCCEEEEEECCCCEEEEEE
T ss_conf 89985899379999869874677623687289982----4520699962899--19999947993999974774266788
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEE
Q ss_conf 23799963248888888889999964389998779988999508950999638999998999998402330377888007
Q 000268 369 YIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNY 448 (1757)
Q Consensus 369 ~l~~~~~~~~g~~~~~~~~~~~~~~~V~sIafSpdG~~LasGs~DG~IrIWDi~t~~~~~s~~~~~~i~~l~gH~~~V~s 448 (1757)
..... ..........+.+.+++.+ +..+.++.+.+|+..... .........+......
T Consensus 204 ~~~~~--------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~-------~~~~~~~~~~~~~~~~ 261 (373)
T d2madh_ 204 VGAML--------------TAAQNLLTQPAQANKSGRI-VWPVYSGKILQADISAAG-------ATNKAPIDALSGGRKA 261 (373)
T ss_pred EEECC--------------CCCCCCEEEEEEECCCCEE-EEECCCCEEEEEECCCCE-------EEEEEEECCCCCCEEE
T ss_conf 63003--------------6675304345887899429-992589659999768990-------7897763056475786
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99826762233334568878888755455557870899818990999927888888522221122235699999999999
Q 000268 449 VQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPP 528 (1757)
Q Consensus 449 IafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~ 528 (1757)
+.+.+.. ...+..+.|+...
T Consensus 262 ~~~~~~~--------------------------~~~~~~~~d~~~~---------------------------------- 281 (373)
T d2madh_ 262 DTWRPGG--------------------------WQQVAYLKSSDGI---------------------------------- 281 (373)
T ss_pred EEECCCC--------------------------CEEEEEECCCCEE----------------------------------
T ss_conf 6413674--------------------------1335771499759----------------------------------
Q ss_pred CCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCC-EEEEEECCCCE
Q ss_conf 99993110489997129998579979999953983999988999458998079988499999039994-99999589929
Q 000268 529 RGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR-IAMSAGYDGKT 607 (1757)
Q Consensus 529 ~~~~~~~l~~h~~~VtsIafSPDG~~LvSGs~DG~I~IWDl~tgkli~tL~gH~~~VtsIafSPdd~~-lLaSgs~DG~I 607 (1757)
..+...+..++....++.+.+||..+++.+..+. +...+..++|+|++.. ++++++.|+.|
T Consensus 282 -----------------~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v 343 (373)
T d2madh_ 282 -----------------YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVL 343 (373)
T ss_pred -----------------EEECCCCCEEEEECCCCEEEEEECCCCCEEEEEC-CCCCEEEEEECCCCCEEEEEEECCCCEE
T ss_conf -----------------9954888247862589869999899996989866-8998258999989998999996799929
Q ss_pred EEEECCCCCEEEEEEECCCCEEEEEECCC
Q ss_conf 99968999228998606752579999479
Q 000268 608 IVWDIWEGIPIRIYEISRFRLVDGKFSPD 636 (1757)
Q Consensus 608 rIWDi~tg~~i~~l~~~~~~ItslafSPD 636 (1757)
++||+.+++.++.+..+......+++.++
T Consensus 344 ~v~D~~tg~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 344 HIYDAGAGDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred EEEECCCCCEEEEECCCCCCCCEEEEECC
T ss_conf 99999999899998888989818998468
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=4e-18 Score=134.94 Aligned_cols=146 Identities=8% Similarity=0.118 Sum_probs=97.5
Q ss_pred EEEEECCCCEEEEEECCCCEEEEEE--ECCCCCEEEEEECCCCCEEEEEE-CCCEEEEEECCCCCCEEEE---CCCCCCE
Q ss_conf 9999818726999926787088998--06789859999957999999984-8966999978999705884---1778855
Q 000268 257 YVITGSDDRLVKIWSMETAYCLASC--RGHEGDITDLAVSSNNALVASAS-NDCIIRVWRLPDGLPISVL---RGHTAAV 330 (1757)
Q Consensus 257 ~LATGS~DGtIkIWDi~tg~~l~tL--~gHs~~VtsIafSPDg~lLASgS-~DGtIrIWDl~tg~~i~~l---~gH~~~V 330 (1757)
.+++++.+++|++|++.+...+..+ ..|.+.+..|+|+|||++|++++ .++.|++|++........+ ..+...+
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p 85 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 85 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCC
T ss_conf 99987899938999983999769999975799886899958979999997789969999996898707985301369985
Q ss_pred EEEEECCCCCCEEEEEEEE-CCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEE
Q ss_conf 9999527999507999992-899199994678976552523799963248888888889999964389998779988999
Q 000268 331 TAIAFSPRPGSVYQLLSSS-DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT 409 (1757)
Q Consensus 331 tsIafSPdg~~~~~LvSgs-~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sIafSpdG~~Las 409 (1757)
..++|+|+++ +|++++ .++.|.+|+............ ..+...+.++.++|+++.+++
T Consensus 86 ~~l~~spDg~---~l~v~~~~~~~v~~~~~~~~~~~~~~~~------------------~~~~~~~~~v~~s~d~~~~~~ 144 (333)
T d1ri6a_ 86 THISTDHQGQ---FVFVGSYNAGNVSVTRLEDGLPVGVVDV------------------VEGLDGCHSANISPDNRTLWV 144 (333)
T ss_dssp SEEEECTTSS---EEEEEETTTTEEEEEEEETTEEEEEEEE------------------ECCCTTBCCCEECTTSSEEEE
T ss_pred EEEEECCCCC---EEEECCCCCCCEEEECCCCCCCEECCCC------------------CCCCCCCEEEEEEECCEEEEC
T ss_conf 4999959998---8742056888302200111000000100------------------377853149886301013102
Q ss_pred EEC-CCEEEEECCCC
Q ss_conf 508-95099963899
Q 000268 410 GSS-DTLARVWNACK 423 (1757)
Q Consensus 410 Gs~-DG~IrIWDi~t 423 (1757)
++. +..|.+|+...
T Consensus 145 ~~~~~~~i~~~~~~~ 159 (333)
T d1ri6a_ 145 PALKQDRICLFTVSD 159 (333)
T ss_dssp EEGGGTEEEEEEECT
T ss_pred CCCCCCEEEEEEECC
T ss_conf 565542056897326
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.86 E-value=2.2e-19 Score=143.64 Aligned_cols=297 Identities=13% Similarity=0.049 Sum_probs=183.2
Q ss_pred CEEEEEECCCCCEEEEEE-----CCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEE----------ECC
Q ss_conf 859999957999999984-----89669999789997058841778855999952799950799999----------289
Q 000268 287 DITDLAVSSNNALVASAS-----NDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSS----------SDD 351 (1757)
Q Consensus 287 ~VtsIafSPDg~lLASgS-----~DGtIrIWDl~tg~~i~~l~gH~~~VtsIafSPdg~~~~~LvSg----------s~D 351 (1757)
++...+.+||++.+++.. .+..|.+||..+++.+..+..+... .++|+||++ +|+++ ..+
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~---~l~v~~~~~~~~~~g~~d 77 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGS---FIAHASTVFSRIARGERT 77 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSS---CEEEEEEEEEETTEEEEE
T ss_pred CCEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCCCC---EEEEEECCCCCCCCCCCC
T ss_conf 717476589999999982664777671999999999499999899998--569948999---999996777642015899
Q ss_pred CCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEE--CCCEEEEECCCCCCCCCC
Q ss_conf 919999467897655252379996324888888888999996438999877998899950--895099963899999899
Q 000268 352 GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS--SDTLARVWNACKPNTDDS 429 (1757)
Q Consensus 352 GtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sIafSpdG~~LasGs--~DG~IrIWDi~t~~~~~s 429 (1757)
+.|++||+.+++....+........ ........++|++++..+++.. .+..+.+|+..++
T Consensus 78 ~~v~v~D~~t~~~~~~~~~~~~~~~-------------~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~----- 139 (355)
T d2bbkh_ 78 DYVEVFDPVTLLPTADIELPDAPRF-------------LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK----- 139 (355)
T ss_dssp EEEEEECTTTCCEEEEEEETTCCCC-------------CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT-----
T ss_pred CEEEEEECCCCCEEEEEECCCCCEE-------------ECCCCCCEEEEECCCCEEEEECCCCCCEEEEEECCCC-----
T ss_conf 9899999999979889805886403-------------1179873499933887157732798820454305788-----
Q ss_pred CCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCC
Q ss_conf 99984023303778880079982676223333456887888875545555787089981899099992788888852222
Q 000268 430 DQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAAR 509 (1757)
Q Consensus 430 ~~~~~~i~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~ 509 (1757)
..+..+..+.... .+ +.+ ....+..+.||...++............
T Consensus 140 ----~~~~~~~~~~~~~---~~-~~~-------------------------~~~~~~~~~dg~~~~v~~~~~~~~~~~~- 185 (355)
T d2bbkh_ 140 ----AFKRMLDVPDCYH---IF-PTA-------------------------PDTFFMHCRDGSLAKVAFGTEGTPEITH- 185 (355)
T ss_dssp ----EEEEEEECCSEEE---EE-EEE-------------------------TTEEEEEETTSCEEEEECCSSSCCEEEE-
T ss_pred ----CEEEEEECCCCCE---EE-ECC-------------------------CCCEEEECCCCCEEEEEECCCCEEEEEE-
T ss_conf ----3766770587404---73-069-------------------------9636999389998999834787379996-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE--EEECCC-----
Q ss_conf 1122235699999999999999931104899971299985799799999539839999889994589--980799-----
Q 000268 510 WTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVH--SLTGHT----- 582 (1757)
Q Consensus 510 w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LvSGs~DG~I~IWDl~tgkli~--tL~gH~----- 582 (1757)
.. .....+...+....+++++..++.++.++.+++|++..+.... ....+.
T Consensus 186 ------~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 243 (355)
T d2bbkh_ 186 ------TE----------------VFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA 243 (355)
T ss_dssp ------CC----------------CCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHH
T ss_pred ------CC----------------CCCCEECCEEEECCCCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCEEE
T ss_conf ------24----------------33300011061021538997388746998299996589907998445784412685
Q ss_pred -----CCEEEEEEECCCCCEEEEEEC---------CCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCE--EEEEECC
Q ss_conf -----884999990399949999958---------992999968999228998606752579999479999--9999579
Q 000268 583 -----ESTYVLDVHPFNPRIAMSAGY---------DGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGAS--IILSDDV 646 (1757)
Q Consensus 583 -----~~VtsIafSPdd~~lLaSgs~---------DG~IrIWDi~tg~~i~~l~~~~~~ItslafSPDG~~--LAsgs~D 646 (1757)
.....+++++++..+++.... ...|.+||..+++.+..+.. ...+.+++|+|||+. ++++..+
T Consensus 244 ~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d 322 (355)
T d2bbkh_ 244 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGD 322 (355)
T ss_dssp TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTT
T ss_pred EEEECCCEEEEEEECCCCEEEEEECCCCCEEECCCCCEEEEEECCCCCEEEEECC-CCCEEEEEECCCCCEEEEEEECCC
T ss_conf 4330351089998079976788740687126517997599986788849899668-998779999289996999997899
Q ss_pred CEEEEEECCCCCCCCCC
Q ss_conf 70999998998311354
Q 000268 647 GQLYILNTGQGESQKDA 663 (1757)
Q Consensus 647 G~I~IWdl~sGe~~~~~ 663 (1757)
+.|++||+.+|+.++.+
T Consensus 323 ~~i~v~D~~tg~~~~~i 339 (355)
T d2bbkh_ 323 KTLYIHDAESGEELRSV 339 (355)
T ss_dssp TEEEEEETTTCCEEEEE
T ss_pred CEEEEEECCCCCEEEEE
T ss_conf 98999999999899999
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=5.8e-18 Score=133.87 Aligned_cols=285 Identities=11% Similarity=0.094 Sum_probs=151.2
Q ss_pred EEEEEECCCEEEEEECCCCCCEEEE--CCCCCCEEEEEECCCCCCEEEE-EEEECCCCEEEEECCCCCCCCEEECCCCCC
Q ss_conf 9999848966999978999705884--1778855999952799950799-999289919999467897655252379996
Q 000268 299 LVASASNDCIIRVWRLPDGLPISVL--RGHTAAVTAIAFSPRPGSVYQL-LSSSDDGTCRIWDARYSQFSPRIYIPRPSD 375 (1757)
Q Consensus 299 lLASgS~DGtIrIWDl~tg~~i~~l--~gH~~~VtsIafSPdg~~~~~L-vSgs~DGtIrIWDl~tg~~~~~i~l~~~~~ 375 (1757)
.+++++.++.|++|++.....+..+ ..|.+.+..|+|+||++ +| +++..|+.|.+|++............
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~---~L~v~~~~d~~i~~~~i~~~~~~~~~~~~---- 78 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKR---YLYVGVRPEFRVLAYRIAPDDGALTFAAE---- 78 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSS---EEEEEETTTTEEEEEEECTTTCCEEEEEE----
T ss_pred EEEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCC---EEEEEECCCCEEEEEEEECCCCCEEEEEE----
T ss_conf 99987899938999983999769999975799886899958979---99999778996999999689870798530----
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEC-CCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCC
Q ss_conf 3248888888889999964389998779988999508-950999638999998999998402330377888007998267
Q 000268 376 AVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 454 (1757)
Q Consensus 376 ~~~g~~~~~~~~~~~~~~~V~sIafSpdG~~LasGs~-DG~IrIWDi~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpd 454 (1757)
......+..++|+|+|++|++++. ++.|.+|+..... .........+...+.++.++++
T Consensus 79 -------------~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~-------~~~~~~~~~~~~~~~~v~~s~d 138 (333)
T d1ri6a_ 79 -------------SALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL-------PVGVVDVVEGLDGCHSANISPD 138 (333)
T ss_dssp -------------EECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTE-------EEEEEEEECCCTTBCCCEECTT
T ss_pred -------------CCCCCCCEEEEECCCCCEEEECCCCCCCEEEECCCCCC-------CEECCCCCCCCCCCEEEEEEEC
T ss_conf -------------13699854999959998874205688830220011100-------0000100377853149886301
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE-EECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6223333456887888875545555787089-981899099992788888852222112223569999999999999993
Q 000268 455 AVASRFSLADSSKEDSTPKFKNSWFCHDNIV-TCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPR 533 (1757)
Q Consensus 455 g~~s~~~~~~~~~~~~~~~~~~~~~~~~~Lv-SgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~ 533 (1757)
+ ..++ ....+..+.+|+........... ..
T Consensus 139 ~--------------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----------------------~~ 169 (333)
T d1ri6a_ 139 N--------------------------RTLWVPALKQDRICLFTVSDDGHLVAQD-----------------------PA 169 (333)
T ss_dssp S--------------------------SEEEEEEGGGTEEEEEEECTTSCEEEEE-----------------------EE
T ss_pred C--------------------------EEEECCCCCCCEEEEEEECCCCCCEEEE-----------------------CE
T ss_conf 0--------------------------1310256554205689732687410010-----------------------00
Q ss_pred EEECCCCCCEEEEEECCCCCEEEEEE-CCCEEEEEECCCCC----EEEEEE------CCCCCEEEEEEECCCCCEEEEEE
Q ss_conf 11048999712999857997999995-39839999889994----589980------79988499999039994999995
Q 000268 534 QRILPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAADGS----LVHSLT------GHTESTYVLDVHPFNPRIAMSAG 602 (1757)
Q Consensus 534 ~~l~~h~~~VtsIafSPDG~~LvSGs-~DG~I~IWDl~tgk----li~tL~------gH~~~VtsIafSPdd~~lLaSgs 602 (1757)
............++|++++.+++... ..+...+|+..... ....+. ........+++++++..+++++.
T Consensus 170 ~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~ 249 (333)
T d1ri6a_ 170 EVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR 249 (333)
T ss_dssp EEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET
T ss_pred EEEEECCCCCCEEEEECCCEEEEEECCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCEEEEEECCCCCEEEECC
T ss_conf 13340388752799960201478620466721788510355520210022343068776553126899515672055045
Q ss_pred CCCCEEEEECCCCCEEEEEE---ECCCCEEEEEECCCCCEEEEEE-CCCEEEEEEC--CCCCC
Q ss_conf 89929999689992289986---0675257999947999999995-7970999998--99831
Q 000268 603 YDGKTIVWDIWEGIPIRIYE---ISRFRLVDGKFSPDGASIILSD-DVGQLYILNT--GQGES 659 (1757)
Q Consensus 603 ~DG~IrIWDi~tg~~i~~l~---~~~~~ItslafSPDG~~LAsgs-~DG~I~IWdl--~sGe~ 659 (1757)
.++.+.+|++........+. .....+..++|+|||++|++++ .++.|.+|++ .+|+.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l 312 (333)
T d1ri6a_ 250 TASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL 312 (333)
T ss_dssp TTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred CCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCE
T ss_conf 688278788739997899999967899762899907989999998899939999997999968
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.81 E-value=3.3e-16 Score=121.83 Aligned_cols=389 Identities=9% Similarity=0.014 Sum_probs=201.1
Q ss_pred EEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEEC-----CCCCEEEEEECCCCCEEEEEEC---------CCEEEEEE
Q ss_conf 999979999999981872699992678708899806-----7898599999579999999848---------96699997
Q 000268 248 CAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRG-----HEGDITDLAVSSNNALVASASN---------DCIIRVWR 313 (1757)
Q Consensus 248 sIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~g-----Hs~~VtsIafSPDg~lLASgS~---------DGtIrIWD 313 (1757)
.+.|.+++.++.. .++.|.+||+.+++....+.. |...|.++.||||+++|+.++. ++.+.+||
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d 98 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CCEECCCCEEEEE--CCCCEEEEECCCCCEEEEECHHHHHHCCCCCCEEEECCCCCEEEEEECCCCEEEECCCCEEEEEE
T ss_conf 7896899979997--59949999889997899970156443167654059989889799997771000104673499998
Q ss_pred CCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89997058841778855999952799950799999289919999467897655252379996324888888888999996
Q 000268 314 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 393 (1757)
Q Consensus 314 l~tg~~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~ 393 (1757)
+.+++. ..+..+...+..+.|+|||+ .++.. .++.+.+|+..++................+.... ........
T Consensus 99 ~~~~~~-~~l~~~~~~~~~~~~SPDG~---~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~--~~~~~~~~ 171 (470)
T d2bgra1 99 LNKRQL-ITEERIPNNTQWVTWSPVGH---KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDW--VYEEEVFS 171 (470)
T ss_dssp TTTTEE-CCSSCCCTTEEEEEECSSTT---CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCH--HHHHHTSS
T ss_pred CCCCCC-CCCCCCCCCCCCCCCCCCCC---EEEEE-ECCCCEEEECCCCCEEEEEECCCCCCCCCCCCCE--EEEEEECC
T ss_conf 988851-31246874231010146764---13575-1464137988999465321014777405354320--11210047
Q ss_pred CEEEEEECCCCCEEEEEECCCE-EEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4389998779988999508950-999638999998999998402330377888007998267622333345688788887
Q 000268 394 QIFCCAFNANGTVFVTGSSDTL-ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 472 (1757)
Q Consensus 394 ~V~sIafSpdG~~LasGs~DG~-IrIWDi~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~ 472 (1757)
....+.|+|||+.|+....|.. +..|.+..... .......+..+.+...+
T Consensus 172 ~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~------------~~~~~~~~~~~~~~~~g----------------- 222 (470)
T d2bgra1 172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD------------ESLQYPKTVRVPYPKAG----------------- 222 (470)
T ss_dssp SSBCEEECTTSSEEEEEEEECTTCCEEEEEECCS------------TTCSSCEEEEEECCBTT-----------------
T ss_pred CCCCCEECCCCCCCCEEEECCCCCCEEEEEEECC------------CCCCCCEEEEECCCCCC-----------------
T ss_conf 7653079999872202686377670699876604------------77788713540366545-----------------
Q ss_pred CCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCC
Q ss_conf 55455557870899818990999927888888522221122235699999999999999931104899971299985799
Q 000268 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN 552 (1757)
Q Consensus 473 ~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG 552 (1757)
....+..+.+|++.+........... .............+..+.|.+++
T Consensus 223 -------------~~~~~~~~~v~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~w~~~~ 271 (470)
T d2bgra1 223 -------------AVNPTVKFFVVNTDSLSSVTNATSIQ------------------ITAPASMLIGDHYLCDVTWATQE 271 (470)
T ss_dssp -------------SCCCEEEEEEEEGGGCCSSSCCCEEE------------------ECCCHHHHTSCEEEEEEEEEETT
T ss_pred -------------CCCCCCEEEEEECCCCCEEEECCCCC------------------CCCCCCCCCCCCEEEEEEECCCC
T ss_conf -------------46886257999988861455203322------------------47863347898667788876878
Q ss_pred CEEEEEEC-CC-----EEEEEECCCCCEEEEEE-------------CCCCCEEEEEEECCCC-CEEEEEECCCCEEEE--
Q ss_conf 79999953-98-----39999889994589980-------------7998849999903999-499999589929999--
Q 000268 553 RFVLAAIM-DC-----RICVWNAADGSLVHSLT-------------GHTESTYVLDVHPFNP-RIAMSAGYDGKTIVW-- 610 (1757)
Q Consensus 553 ~~LvSGs~-DG-----~I~IWDl~tgkli~tL~-------------gH~~~VtsIafSPdd~-~lLaSgs~DG~IrIW-- 610 (1757)
..++.... .+ .+..+|..++....... .+... ...+.+.+. .+++.+..||...||
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~s~~dg~~~ly~~ 349 (470)
T d2bgra1 272 RISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPS--EPHFTLDGNSFYKIISNEEGYRHICYF 349 (470)
T ss_dssp EEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCC--CCEECTTSSEEEEEEECTTSCEEEEEE
T ss_pred CEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEEEEEEEECCCEEECCCCC--CCEEEECCCCCEEEEECCCCCCEEEEE
T ss_conf 334787304688159999996188894789998751466214335313577--724542378847987436757645999
Q ss_pred ECCCCCEEEEEEECCCCEEEEEECCCCCEEE-EEECCC------EEEEEECCCCCCCCCCCCCEEECCCCCCEEECCCCC
Q ss_conf 6899922899860675257999947999999-995797------099999899831135432112217985078814786
Q 000268 611 DIWEGIPIRIYEISRFRLVDGKFSPDGASII-LSDDVG------QLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGN 683 (1757)
Q Consensus 611 Di~tg~~i~~l~~~~~~ItslafSPDG~~LA-sgs~DG------~I~IWdl~sGe~~~~~~~~~~fs~D~r~Li~d~~g~ 683 (1757)
+.. +.....+..+...|..+ ++++++.+. ++..++ .|+-.++..+.....+
T Consensus 350 ~~~-g~~~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~l-------------------- 407 (470)
T d2bgra1 350 QID-KKDCTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCL-------------------- 407 (470)
T ss_dssp ETT-CSCCEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEES--------------------
T ss_pred ECC-CCCEEEECCCCEEEEEE-EEECCCEEEEEEECCCCCCCEEEEEEEECCCCCCEEEE--------------------
T ss_conf 526-87304511698048787-89779999999956899835179999988899860570--------------------
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCEEEEEECCCCCCCEEEECCCCCCCC
Q ss_conf 33123211467688787565789888999520010100166331698789984999618998873684106985632
Q 000268 684 VLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVM 760 (1757)
Q Consensus 684 vlD~~tql~p~l~~l~~~L~D~~~~p~p~~~q~l~~~r~~g~~~iafSPDG~~LAvg~d~s~~~~v~l~~l~~~~~l 760 (1757)
+ .....+..+...++|||||++++..........+.++...+++.+
T Consensus 408 -----t--------------------------~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v 453 (470)
T d2bgra1 408 -----S--------------------------CELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGL 453 (470)
T ss_dssp -----S--------------------------TTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEE
T ss_pred -----C--------------------------CCCCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCEE
T ss_conf -----3--------------------------543588898799999989999999832899981999998999899
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.79 E-value=6.5e-17 Score=126.64 Aligned_cols=122 Identities=12% Similarity=-0.100 Sum_probs=71.5
Q ss_pred CCCEEEEEECCCCCEEEE---ECC--CCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE----------CCC
Q ss_conf 987899999799999999---818--72699992678708899806789859999957999999984----------896
Q 000268 243 RNAVYCAIFDRSGRYVIT---GSD--DRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS----------NDC 307 (1757)
Q Consensus 243 ~~~V~sIaFSPDG~~LAT---GS~--DGtIkIWDi~tg~~l~tL~gHs~~VtsIafSPDg~lLASgS----------~DG 307 (1757)
.+....++..++++.... ... +..|.+||..+++.+.++.++... .++|+||++.|++.+ .++
T Consensus 19 ~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~ 96 (368)
T d1mdah_ 19 DGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTD 96 (368)
T ss_dssp CCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEE
T ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCC--CCEECCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 79866645589876126972045788621799708998377888578777--5139899988999755676401035678
Q ss_pred EEEEEECCCCCCEEEECCCCC-------CEEEEEECCCCCCEEEEEEE-ECCCCEEEEECCCCCCCCEEE
Q ss_conf 699997899970588417788-------55999952799950799999-289919999467897655252
Q 000268 308 IIRVWRLPDGLPISVLRGHTA-------AVTAIAFSPRPGSVYQLLSS-SDDGTCRIWDARYSQFSPRIY 369 (1757)
Q Consensus 308 tIrIWDl~tg~~i~~l~gH~~-------~VtsIafSPdg~~~~~LvSg-s~DGtIrIWDl~tg~~~~~i~ 369 (1757)
.|.+||..+++++..+..+.. ....++|+||++ +|+++ ..++.+.+||+.+++....+.
T Consensus 97 ~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk---~l~va~~~~~~v~~~d~~~~~~~~~~~ 163 (368)
T d1mdah_ 97 YVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA---CLLFFLFGSSAAAGLSVPGASDDQLTK 163 (368)
T ss_dssp EEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS---CEEEEECSSSCEEEEEETTTEEEEEEE
T ss_pred EEEEEECCCCCEEEEECCCCCCEECCCCCCCCEEECCCCC---EEEEEECCCCEEEEEECCCCCEEEEEE
T ss_conf 6999989999383064378542102468864058878998---999996899859999899893867860
|
| >d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: TAFII250 double bromodomain module species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=6.6e-19 Score=140.31 Aligned_cols=110 Identities=16% Similarity=0.332 Sum_probs=97.5
Q ss_pred CCHHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 79256779999999977-52033300013322224435778524479888978999983306668978999999999985
Q 000268 1640 IDDDNRNKLLSAFAKLE-QSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSN 1718 (1757)
Q Consensus 1640 ~~~~~~~~Lls~~~~le-~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~N 1718 (1757)
++++....+..++..+. ......+++|.|..+++....|+|+.+|+.||||+||++||+++.|+++++|..||++||+|
T Consensus 2 ~~~~~~~~~~~il~~l~~~~~~~~p~a~pF~~pVd~~~~PdY~~vIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~N 81 (128)
T d1eqfa2 2 LDDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILAN 81 (128)
T ss_dssp GGCHHHHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 88427899999999999999871998770147999000768898848810399999999863246389999999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 4010699949999999999999999817999
Q 000268 1719 AESYFGRNTDLSTKIKRLSDLVTRTLSSLKA 1749 (1757)
Q Consensus 1719 a~~fn~~~s~i~~~a~~l~~~~~~~l~~~~~ 1749 (1757)
|..||++++.++++|+.|.++|.+.+.+++.
T Consensus 82 a~~yN~~~s~i~~~A~~L~~~~~~~l~~~~~ 112 (128)
T d1eqfa2 82 SVKYNGPESQYTKTAQEIVNVCYQTLTEYDE 112 (128)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9998799999999999999999999999698
|
| >d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: P300/CAF histone acetyltransferase bromodomain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=3.3e-19 Score=142.40 Aligned_cols=104 Identities=14% Similarity=0.269 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 79999999977520333000133222244357785244798889789999833066689789999999999854010699
Q 000268 1646 NKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGR 1725 (1757)
Q Consensus 1646 ~~Lls~~~~le~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~~ 1725 (1757)
+++...+..+.+....+..++.|..+++....|+|+++|+.||||+||++||+++.|+++++|..||++||.||.+||++
T Consensus 12 ~~l~~~l~~il~~l~~~~~a~~F~~pv~~~~~pdY~~iI~~PmdL~~I~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yn~~ 91 (118)
T d1wuma1 12 DQLYSTLKSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMADLQRVFTNCKEYNPP 91 (118)
T ss_dssp HHHHHHHHHHHHHHHHSSSCHHHHSCCCSSSSSSCTTTCSSCCCHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999958996815688996457688988387420999999760466576689999999999999998799
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 949999999999999999817999
Q 000268 1726 NTDLSTKIKRLSDLVTRTLSSLKA 1749 (1757)
Q Consensus 1726 ~s~i~~~a~~l~~~~~~~l~~~~~ 1749 (1757)
++.++.+|..|+++|.+.++++++
T Consensus 92 ~s~~~~~A~~l~~~f~~~~~e~~l 115 (118)
T d1wuma1 92 ESEYYKCANILEKFFFSKIKEAGL 115 (118)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999999999999998656
|
| >d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: GCN5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=6.9e-19 Score=140.19 Aligned_cols=101 Identities=14% Similarity=0.267 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 79999999977520333000133222244357785244798889789999833066689789999999999854010699
Q 000268 1646 NKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGR 1725 (1757)
Q Consensus 1646 ~~Lls~~~~le~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~~ 1725 (1757)
+.|+..+..+......+...+.|..+++....|+|+++|+.||||+||++||+++.|+++++|..||++||.||.+||++
T Consensus 1 d~L~~~l~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 80 (102)
T d3d7ca1 1 DQLYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPP 80 (102)
T ss_dssp HHHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCT
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 95999999999999809997722788996667678988089468999998760676377999999999999999998799
Q ss_pred CCHHHHHHHHHHHHHHHHHHC
Q ss_conf 949999999999999999817
Q 000268 1726 NTDLSTKIKRLSDLVTRTLSS 1746 (1757)
Q Consensus 1726 ~s~i~~~a~~l~~~~~~~l~~ 1746 (1757)
+|.++++|..|+++|.++|++
T Consensus 81 ~s~~~~~A~~l~~~f~~~~ke 101 (102)
T d3d7ca1 81 DSEYCRCASALEKFFYFKLKE 101 (102)
T ss_dssp TSHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999999736
|
| >d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: GCN5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.77 E-value=6.7e-19 Score=140.25 Aligned_cols=100 Identities=16% Similarity=0.309 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 79999999977520333000133222244357785244798889789999833066689789999999999854010699
Q 000268 1646 NKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGR 1725 (1757)
Q Consensus 1646 ~~Lls~~~~le~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~~ 1725 (1757)
+.+...+..+ ..+..++.|..+++....|+|+++|+.||||+||++||+++.|.++++|..||++||.||.+||++
T Consensus 6 ~~l~~il~~l----~~~~~a~pF~~pvd~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~ 81 (111)
T d1e6ia_ 6 AAIQNILTEL----QNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGE 81 (111)
T ss_dssp HHHHHHHHHH----HHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHH----HHCCCCHHHCCCCCCHHCCCHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999----869887131489990217088988588041989999987361242999999999999999998799
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 949999999999999999817999
Q 000268 1726 NTDLSTKIKRLSDLVTRTLSSLKA 1749 (1757)
Q Consensus 1726 ~s~i~~~a~~l~~~~~~~l~~~~~ 1749 (1757)
+|.++.+|..|+++|.+.++.+++
T Consensus 82 ~s~i~~~A~~l~~~f~~~~~~ipe 105 (111)
T d1e6ia_ 82 NTSYYKYANRLEKFFNNKVKEIPE 105 (111)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTSGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999999997310
|
| >d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: TAFII250 double bromodomain module species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=2.7e-18 Score=136.15 Aligned_cols=103 Identities=14% Similarity=0.303 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999775203330001332222443577852447988897899998330666897899999999998540106999
Q 000268 1647 KLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRN 1726 (1757)
Q Consensus 1647 ~Lls~~~~le~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~Na~~fn~~~ 1726 (1757)
.+...+..+..........+.|..+++....|+|+.+|+.||||.||++||++++|+++++|..||++||.||.+||+++
T Consensus 26 ~l~~~l~~il~~l~~~~~s~pF~~Pvd~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 105 (139)
T d1eqfa1 26 TLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPK 105 (139)
T ss_dssp HHHHHHHHHHHHHHTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHCCCCHHHCCCHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999998299765551799934466789880773549999999974890899999999999999999987999
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 49999999999999999817999
Q 000268 1727 TDLSTKIKRLSDLVTRTLSSLKA 1749 (1757)
Q Consensus 1727 s~i~~~a~~l~~~~~~~l~~~~~ 1749 (1757)
+.++++|..|.++|.+.++++..
T Consensus 106 s~i~~~A~~L~~~~~~~~~~~~~ 128 (139)
T d1eqfa1 106 HSLTQISQSMLDLCDEKLKEKED 128 (139)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.76 E-value=3.2e-15 Score=115.02 Aligned_cols=360 Identities=9% Similarity=-0.039 Sum_probs=192.5
Q ss_pred CCCCCCEEEEEE-----CCCCCCEEEEEECCCCCEEEEECC---------CCEEEEEECCCCEEEEEEECCCCCEEEEEE
Q ss_conf 211232268998-----167987899999799999999818---------726999926787088998067898599999
Q 000268 228 TMVQKMQNIKRV-----RGHRNAVYCAIFDRSGRYVITGSD---------DRLVKIWSMETAYCLASCRGHEGDITDLAV 293 (1757)
Q Consensus 228 ~~~~~~k~i~tL-----~GH~~~V~sIaFSPDG~~LATGS~---------DGtIkIWDi~tg~~l~tL~gHs~~VtsIaf 293 (1757)
+...+.+....+ ..|...|.++.|||||++||.++. ++.+.|||+.+++. ..+..+...+..+.|
T Consensus 41 ~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~ 119 (470)
T d2bgra1 41 FNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTW 119 (470)
T ss_dssp EETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEE
T ss_pred EECCCCCEEEEECHHHHHHCCCCCCEEEECCCCCEEEEEECCCCEEEECCCCEEEEEECCCCCC-CCCCCCCCCCCCCCC
T ss_conf 9889997899970156443167654059989889799997771000104673499998988851-312468742310101
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCCEEEECCC------------------CCCEEEEEECCCCCCEEEEEEEECCCC-E
Q ss_conf 579999999848966999978999705884177------------------885599995279995079999928991-9
Q 000268 294 SSNNALVASASNDCIIRVWRLPDGLPISVLRGH------------------TAAVTAIAFSPRPGSVYQLLSSSDDGT-C 354 (1757)
Q Consensus 294 SPDg~lLASgS~DGtIrIWDl~tg~~i~~l~gH------------------~~~VtsIafSPdg~~~~~LvSgs~DGt-I 354 (1757)
||||+.||... ++.+.+|+..++...+....+ .+....+.|+|||+ +|+....|.+ +
T Consensus 120 SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk---~ia~~~~d~~~v 195 (470)
T d2bgra1 120 SPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGT---FLAYAQFNDTEV 195 (470)
T ss_dssp CSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSS---EEEEEEEECTTC
T ss_pred CCCCCEEEEEE-CCCCEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEECCCCC---CCCEEEECCCCC
T ss_conf 46764135751-46413798899946532101477740535432011210047765307999987---220268637767
Q ss_pred EEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 99946789765525237999632488888888899999643899987799889995089509996389999989999984
Q 000268 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNH 434 (1757)
Q Consensus 355 rIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sIafSpdG~~LasGs~DG~IrIWDi~t~~~~~s~~~~~ 434 (1757)
..|.+....... ........+.+...+. ...+..+.+|++..+..........
T Consensus 196 ~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~g~----~~~~~~~~v~~~~~~~~~~~~~~~~ 248 (470)
T d2bgra1 196 PLIEYSFYSDES-----------------------LQYPKTVRVPYPKAGA----VNPTVKFFVVNTDSLSSVTNATSIQ 248 (470)
T ss_dssp CEEEEEECCSTT-----------------------CSSCEEEEEECCBTTS----CCCEEEEEEEEGGGCCSSSCCCEEE
T ss_pred CEEEEEEECCCC-----------------------CCCCEEEEECCCCCCC----CCCCCEEEEEECCCCCEEEECCCCC
T ss_conf 069987660477-----------------------7887135403665454----6886257999988861455203322
Q ss_pred C--EEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE-ECCCC---EEEEEE--CCCCCCCCC
Q ss_conf 0--233037788800799826762233334568878888755455557870899-81899---099992--788888852
Q 000268 435 E--IDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVT-CSRDG---SAIIWI--PRSRRSHPK 506 (1757)
Q Consensus 435 ~--i~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvS-gS~DG---tI~IWD--l~t~k~~~~ 506 (1757)
. ..........+..+.|.+++ ..++. ....+ .+.+++ ..++.....
T Consensus 249 ~~~~~~~~~~~~~~~~~~w~~~~--------------------------~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~ 302 (470)
T d2bgra1 249 ITAPASMLIGDHYLCDVTWATQE--------------------------RISLQWLRRIQNYSVMDICDYDESSGRWNCL 302 (470)
T ss_dssp ECCCHHHHTSCEEEEEEEEEETT--------------------------EEEEEEEESSTTEEEEEEEEEETTTTEEEEC
T ss_pred CCCCCCCCCCCCEEEEEEECCCC--------------------------CEEEEEEECCCCCEEEEEEEECCCCCCEEEE
T ss_conf 47863347898667788876878--------------------------3347873046881599999961888947899
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCEE--EEEECCCCCEEEEEECCCCC
Q ss_conf 2221122235699999999999999931104899971299985799799999539839--99988999458998079988
Q 000268 507 AARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRI--CVWNAADGSLVHSLTGHTES 584 (1757)
Q Consensus 507 ~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LvSGs~DG~I--~IWDl~tgkli~tL~gH~~~ 584 (1757)
...+..... ...-+..+........+..++.+++.+..+|.. ++|+.. +.....+..+...
T Consensus 303 ~~~~~~~~~----------------~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~-g~~~~~lt~g~~~ 365 (470)
T d2bgra1 303 VARQHIEMS----------------TTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQID-KKDCTFITKGTWE 365 (470)
T ss_dssp GGGCEEEEC----------------SSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETT-CSCCEESCCSSSC
T ss_pred EEEEEEEEE----------------CCCEEECCCCCCCEEEECCCCCEEEEECCCCCCEEEEEECC-CCCEEEECCCCEE
T ss_conf 987514662----------------14335313577724542378847987436757645999526-8730451169804
Q ss_pred EEEEEEECCCCCEEEEEECCCC----EEEE--ECCCCCEEEEEE----ECCCCEEEEEECCCCCEEEEEE---CCCEEEE
Q ss_conf 4999990399949999958992----9999--689992289986----0675257999947999999995---7970999
Q 000268 585 TYVLDVHPFNPRIAMSAGYDGK----TIVW--DIWEGIPIRIYE----ISRFRLVDGKFSPDGASIILSD---DVGQLYI 651 (1757)
Q Consensus 585 VtsIafSPdd~~lLaSgs~DG~----IrIW--Di~tg~~i~~l~----~~~~~ItslafSPDG~~LAsgs---~DG~I~I 651 (1757)
|..+ +++++..+++++..++. -.|| ++..+.....+. .+...+..++|||||++++... ..-.+.+
T Consensus 366 v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l 444 (470)
T d2bgra1 366 VIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTL 444 (470)
T ss_dssp EEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEE
T ss_pred EEEE-EEECCCEEEEEEECCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEE
T ss_conf 8787-897799999999568998351799999888998605703543588898799999989999999832899981999
Q ss_pred EECCCCCCCCCC
Q ss_conf 998998311354
Q 000268 652 LNTGQGESQKDA 663 (1757)
Q Consensus 652 Wdl~sGe~~~~~ 663 (1757)
|+..+|+.++.+
T Consensus 445 ~~~~~g~~v~~l 456 (470)
T d2bgra1 445 HSSVNDKGLRVL 456 (470)
T ss_dssp EETTTTEEEEEE
T ss_pred EECCCCCEEEEE
T ss_conf 998999899998
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.75 E-value=1.7e-15 Score=116.91 Aligned_cols=278 Identities=10% Similarity=0.015 Sum_probs=161.9
Q ss_pred CCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEC----------CCCEEEEEECCCCEEEEEEECCCC-------CEEEE
Q ss_conf 1123226899816798789999979999999981----------872699992678708899806789-------85999
Q 000268 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGS----------DDRLVKIWSMETAYCLASCRGHEG-------DITDL 291 (1757)
Q Consensus 229 ~~~~~k~i~tL~GH~~~V~sIaFSPDG~~LATGS----------~DGtIkIWDi~tg~~l~tL~gHs~-------~VtsI 291 (1757)
+..+.+.+.++.++... .++|+|||++|++.+ .|+.|.+||..+++.+..+..+.. ....+
T Consensus 52 d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~ 129 (368)
T d1mdah_ 52 CAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHII 129 (368)
T ss_dssp ETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSE
T ss_pred ECCCCCEEEEEECCCCC--CCEECCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEECCCCCCCCE
T ss_conf 08998377888578777--5139899988999755676401035678699998999938306437854210246886405
Q ss_pred EECCCCCEEEEEE-CCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECCCCCCCCEEEC
Q ss_conf 9957999999984-896699997899970588417788559999527999507999992899199994678976552523
Q 000268 292 AVSSNNALVASAS-NDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYI 370 (1757)
Q Consensus 292 afSPDg~lLASgS-~DGtIrIWDl~tg~~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~~~~i~l 370 (1757)
+|+|||++|+++. .++.|.+||+.+++.+..+..+.... +.+.+. ..++..+.||.+.+|++...........
T Consensus 130 a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~----~~~~~~--~~~v~~~~Dg~~~~~~~~~~~~~~~~~~ 203 (368)
T d1mdah_ 130 GNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH----IHPGAA--ATHYLGSCPASLAASDLAAAPAAAGIVG 203 (368)
T ss_dssp EECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC----CEEEET--TEEECCCCTTSCEEEECCSSCCCCEECC
T ss_pred EECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCE----ECCCCC--CEEEEECCCCCEEEEEECCCCEEEEEEE
T ss_conf 8878998999996899859999899893867860467523----746998--2399994899889998268962666530
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEE
Q ss_conf 79996324888888888999996438999877998899950895099963899999899999840233037788800799
Q 000268 371 PRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQ 450 (1757)
Q Consensus 371 ~~~~~~~~g~~~~~~~~~~~~~~~V~sIafSpdG~~LasGs~DG~IrIWDi~t~~~~~s~~~~~~i~~l~gH~~~V~sIa 450 (1757)
.. ....+...+....+.+++..+... .+.+.+++...... ........+........
T Consensus 204 ~~--------------~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 260 (368)
T d1mdah_ 204 AQ--------------CTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGA-------TMKAAIDGNESGRKADN 260 (368)
T ss_dssp CC--------------SCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCC-------EEECCCCSSCTHHHHTT
T ss_pred CC--------------CCCCCCCCEEECCCCCCCEEEEEC--CCCEEEEEECCCCE-------EEEEECCCCCCEEEEEE
T ss_conf 31--------------113566646601015586899934--89779996069936-------99760246543045540
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 82676223333456887888875545555787089981899099992788888852222112223569999999999999
Q 000268 451 FSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRG 530 (1757)
Q Consensus 451 fSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~ 530 (1757)
+.+
T Consensus 261 ~~~----------------------------------------------------------------------------- 263 (368)
T d1mdah_ 261 FRS----------------------------------------------------------------------------- 263 (368)
T ss_dssp EEE-----------------------------------------------------------------------------
T ss_pred ECC-----------------------------------------------------------------------------
T ss_conf 127-----------------------------------------------------------------------------
Q ss_pred CCCEEECCCCCCEEEEEECCCCCEEEEEECC---------CEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCC-EEEE
Q ss_conf 9931104899971299985799799999539---------83999988999458998079988499999039994-9999
Q 000268 531 GPRQRILPTPRGVNMIVWSLDNRFVLAAIMD---------CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR-IAMS 600 (1757)
Q Consensus 531 ~~~~~l~~h~~~VtsIafSPDG~~LvSGs~D---------G~I~IWDl~tgkli~tL~gH~~~VtsIafSPdd~~-lLaS 600 (1757)
.....+++++++..++....+ ..|.+||..+++.+..+.. ...+..++|+|++.. ++++
T Consensus 264 ----------~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s 332 (368)
T d1mdah_ 264 ----------AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYAN 332 (368)
T ss_dssp ----------CSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEE
T ss_pred ----------CCCEEEEECCCCCEEEEEECCCCCEEECCCCEEEEEECCCCCEEEEECC-CCCEEEEEECCCCCEEEEEE
T ss_conf ----------8835688717998799983589733405886499998999948689558-99651799998999899999
Q ss_pred EECCCCEEEEECCCCCEEEEEEECC
Q ss_conf 9589929999689992289986067
Q 000268 601 AGYDGKTIVWDIWEGIPIRIYEISR 625 (1757)
Q Consensus 601 gs~DG~IrIWDi~tg~~i~~l~~~~ 625 (1757)
+..|+.|.+||..+++.+..+..+.
T Consensus 333 ~~~~~~v~v~D~~tgk~~~~i~~g~ 357 (368)
T d1mdah_ 333 SAGTEVLDIYDAASDQDQSSVELDK 357 (368)
T ss_dssp ETTTTEEEEEESSSCEEEEECCCCS
T ss_pred ECCCCEEEEEECCCCCEEEEEECCC
T ss_conf 4899969999899997999987999
|
| >d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: CREB-binding protein, CBP species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=4.7e-18 Score=134.46 Aligned_cols=104 Identities=13% Similarity=0.261 Sum_probs=90.9
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 92567799999999775203330001332222443--5778524479888978999983306668978999999999985
Q 000268 1641 DDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVS--QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSN 1718 (1757)
Q Consensus 1641 ~~~~~~~Lls~~~~le~~~~~~~~~~~~~~~~~~~--~~~~y~~~i~~Pmdl~tI~~Rlen~~Yr~~~~~~~Dv~~i~~N 1718 (1757)
+.+.+..|...+.++.. ....++.|..+++.. ..|+|+++|+.||||.||++||+|+.|+++++|..||++|++|
T Consensus 4 p~el~~~l~~~l~~l~~---~~p~a~pF~~pvd~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~N 80 (114)
T d3dwya1 4 PEELRQALMPTLEALYR---QDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNN 80 (114)
T ss_dssp HHHHHHHHHHHHHHHHT---CTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---CCCCCCCCCCCCCHHHCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 89999999999999985---396777667999832135997788837877799999998847566299999999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 40106999499999999999999998179
Q 000268 1719 AESYFGRNTDLSTKIKRLSDLVTRTLSSL 1747 (1757)
Q Consensus 1719 a~~fn~~~s~i~~~a~~l~~~~~~~l~~~ 1747 (1757)
|++||++++.++..|..|+++|.+.+.++
T Consensus 81 a~~yN~~~s~~~~~A~~L~~~f~~~~~~i 109 (114)
T d3dwya1 81 AWLYNRKTSRVYKFCSKLAEVFEQEIDPV 109 (114)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99987999999999999999999999999
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.67 E-value=1.5e-15 Score=117.28 Aligned_cols=355 Identities=10% Similarity=-0.002 Sum_probs=186.5
Q ss_pred EEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECC
Q ss_conf 99981872699992678708899806789859999957999999984896699997899970588417788559999527
Q 000268 258 VITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSP 337 (1757)
Q Consensus 258 LATGS~DGtIkIWDi~tg~~l~tL~gHs~~VtsIafSPDg~lLASgS~DGtIrIWDl~tg~~i~~l~gH~~~VtsIafSP 337 (1757)
+++|+.+|.|.+|++.+++.++++.. |+|++.. ..|..+.+.+++. .+........|........++|
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpV---------fspd~~~-g~g~~~es~~vl~--~~~~~~~gd~hhP~~s~t~gtp 81 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPV---------FNVDSAT-GWGITNESKEILG--GDQQYLNGDCHHPHISMTDGRY 81 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECS---------SSBCTTT-CTTTSHHHHHHHC--SSSCCSCCCBCCCEEEEETTEE
T ss_pred EEECCCCCCEEEEECCCCCEEEEEEE---------ECCCCCE-EEEECCCCCEEEE--CCCCCCCCCCCCCCCCEECCCC
T ss_conf 99688777489996789807999976---------7578987-9998886504783--1332256755677722103268
Q ss_pred CCCCEEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC--EEEEEECCCE
Q ss_conf 99950799999289919999467897655252379996324888888888999996438999877998--8999508950
Q 000268 338 RPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT--VFVTGSSDTL 415 (1757)
Q Consensus 338 dg~~~~~LvSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sIafSpdG~--~LasGs~DG~ 415 (1757)
||+ +.+++...+..|.++|+.+++....+.+ +....+..++|+|+|+ +++..+.+..
T Consensus 82 DGr--~lfV~d~~~~rVavIDl~t~k~~~ii~i-------------------P~g~gphgi~~spdg~t~YV~~~~~~~v 140 (441)
T d1qnia2 82 DGK--YLFINDKANTRVARIRLDIMKTDKITHI-------------------PNVQAIHGLRLQKVPKTNYVFCNAEFVI 140 (441)
T ss_dssp EEE--EEEEEETTTTEEEEEETTTTEEEEEEEC-------------------TTCCCEEEEEECCSSBCCEEEEEECSCE
T ss_pred CCC--EEEEECCCCCEEEEEECCCCCEEEEEEC-------------------CCCCCCCCEEEECCCCEEEEEECCCCCC
T ss_conf 888--8999738999799998877847557956-------------------7887864348705699899995667754
Q ss_pred -----------------EEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -----------------999638999998999998402330377888007998267622333345688788887554555
Q 000268 416 -----------------ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478 (1757)
Q Consensus 416 -----------------IrIWDi~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~~~~~~ 478 (1757)
+..+|..+ ......+.. ......+.|+|++
T Consensus 141 ~~~~dg~~~~~~~~~~~~~~iD~~t---------~~v~~qI~v-~~~p~~v~~spdG----------------------- 187 (441)
T d1qnia2 141 PQPNDGTDFSLDNSYTMFTAIDAET---------MDVAWQVIV-DGNLDNTDADYTG----------------------- 187 (441)
T ss_dssp ESSCSSSCCCGGGEEEEEEEEETTT---------CSEEEEEEE-SSCCCCEEECSSS-----------------------
T ss_pred CCCCCCCCCCCCCCCCEEEEECCCC---------CEEEEEEEC-CCCCCCEEECCCC-----------------------
T ss_conf 4367663001455532388663755---------606478736-9986546987999-----------------------
Q ss_pred CCCCCEEEECCC-CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCEEEE
Q ss_conf 578708998189-9099992788888852222112223569999999999999993110489997129998579979999
Q 000268 479 FCHDNIVTCSRD-GSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA 557 (1757)
Q Consensus 479 ~~~~~LvSgS~D-GtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LvS 557 (1757)
..+++.+.+ ..+..++..+..... .+ ........+.++++|+++..
T Consensus 188 ---k~a~vt~~nse~~~~id~~t~~~~d-----------------------------~i-~v~n~p~~~~~~~dGk~~~v 234 (441)
T d1qnia2 188 ---KYATSTCYNSERAVDLAGTMRNDRD-----------------------------WV-VVFNVERIAAAVKAGNFKTI 234 (441)
T ss_dssp ---SEEEEEESCTTCCSSHHHHTCSSBC-----------------------------EE-EEEEHHHHHHHHHTTCCBCC
T ss_pred ---CEEEEEECCCCCEEEEECCCCCEEE-----------------------------EE-EECCCCCEEEEECCCCEEEE
T ss_conf ---9899985178731898515712178-----------------------------99-96885110799669999996
Q ss_pred EECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCC-----------EEEEEEECCC
Q ss_conf 95398399998899945899807998849999903999499999589929999689992-----------2899860675
Q 000268 558 AIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI-----------PIRIYEISRF 626 (1757)
Q Consensus 558 Gs~DG~I~IWDl~tgkli~tL~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDi~tg~-----------~i~~l~~~~~ 626 (1757)
+ .++.+.+++....+.+..+..... ...+.++|++..+++++..+++|.+||+.+.. ++.-.....-
T Consensus 235 ~-~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~gl 312 (441)
T d1qnia2 235 G-DSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGL 312 (441)
T ss_dssp T-TCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCS
T ss_pred C-CCCCEEEECCCCCCEEEEEECCCC-CCCCEECCCCCEEEEECCCCCCEEEEEEEHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 9-998289980368706899717988-66726899987899907759938999832244575256884247996014554
Q ss_pred CEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCEEECCCC-CCEEECCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 25799994799999999579709999989983113543211221798-50788147863312321146768878756578
Q 000268 627 RLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDY-RPLVQDTYGNVLDQETQLAPHRRNLQDPLCDS 705 (1757)
Q Consensus 627 ~ItslafSPDG~~LAsgs~DG~I~IWdl~sGe~~~~~~~~~~fs~D~-r~Li~d~~g~vlD~~tql~p~l~~l~~~L~D~ 705 (1757)
.....+|+++|..+.+...|.+|..|++..... .+..+. .+++ + .++
T Consensus 313 gplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~--------~~~~~~~~~v~-~----~~~------------------- 360 (441)
T d1qnia2 313 GPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIK--------HYNGDRVNYIR-Q----KLD------------------- 360 (441)
T ss_dssp CEEEEEECSSSEEEEEETTTTEEEEEEHHHHHH--------HHTTCCCCCEE-E----EEE-------------------
T ss_pred CCCCCEECCCCEEEECCCCCCEEEEECCCHHHH--------HHCCCCCCEEE-E----CCC-------------------
T ss_conf 766522657855998524431689723542213--------32267776568-6----453-------------------
Q ss_pred CCCCCCCCCHHHHHCCCCCCCCEEECCCCCEEEEEECCCCCCCEEEECC
Q ss_conf 9888999520010100166331698789984999618998873684106
Q 000268 706 AMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPL 754 (1757)
Q Consensus 706 ~~~p~p~~~q~l~~~r~~g~~~iafSPDG~~LAvg~d~s~~~~v~l~~l 754 (1757)
-.+| ++|.....+.+|+|||+||+.+.-.+.++...+.++
T Consensus 361 ------v~y~---~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~~~~g~~ 400 (441)
T d1qnia2 361 ------VQYQ---PGHNHASLTESRDADGKWLVVLSKFSKDRFLPVGPL 400 (441)
T ss_dssp ------CSSC---EEEEEETTTTSTTCCCCEEEEEESCCGGGSCCCSSS
T ss_pred ------CCCC---CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC
T ss_conf ------2668---987752454223898848996574442557678889
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.63 E-value=1.7e-15 Score=116.91 Aligned_cols=291 Identities=11% Similarity=0.050 Sum_probs=151.7
Q ss_pred CCCCCCEEEEEECCCCCEEEEE-CCCCEEEEEECCCCEEEEEEE-CCCCCEEEEEECCCCC--EEEEEECCCEEEEEECC
Q ss_conf 1679878999997999999998-187269999267870889980-6789859999957999--99998489669999789
Q 000268 240 RGHRNAVYCAIFDRSGRYVITG-SDDRLVKIWSMETAYCLASCR-GHEGDITDLAVSSNNA--LVASASNDCIIRVWRLP 315 (1757)
Q Consensus 240 ~GH~~~V~sIaFSPDG~~LATG-S~DGtIkIWDi~tg~~l~tL~-gHs~~VtsIafSPDg~--lLASgS~DGtIrIWDl~ 315 (1757)
..|.-.+.+..++|||++|++. ..+..|.+||+.++++...+. .+...+..++|+|+++ +++..+.+. +.+ ..
T Consensus 68 d~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~-v~~--~~ 144 (441)
T d1qnia2 68 DCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFV-IPQ--PN 144 (441)
T ss_dssp CBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSC-EES--SC
T ss_pred CCCCCCCCEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCEEEEEECCCCC-CCC--CC
T ss_conf 556777221032688888999738999799998877847557956788786434870569989999566775-443--67
Q ss_pred CCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 99705884177885599995279995079999928991999946789765525237999632488888888899999643
Q 000268 316 DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 395 (1757)
Q Consensus 316 tg~~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V 395 (1757)
.+..+ ..+. .. ..+..+|..+.....++.. ...+
T Consensus 145 dg~~~---------------~~~~----~~------~~~~~iD~~t~~v~~qI~v---------------------~~~p 178 (441)
T d1qnia2 145 DGTDF---------------SLDN----SY------TMFTAIDAETMDVAWQVIV---------------------DGNL 178 (441)
T ss_dssp SSSCC---------------CGGG----EE------EEEEEEETTTCSEEEEEEE---------------------SSCC
T ss_pred CCCCC---------------CCCC----CC------CEEEEECCCCCEEEEEEEC---------------------CCCC
T ss_conf 66300---------------1455----53------2388663755606478736---------------------9986
Q ss_pred EEEEECCCCCEEEEEECCC-EEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8999877998899950895-099963899999899999840233037788800799826762233334568878888755
Q 000268 396 FCCAFNANGTVFVTGSSDT-LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 474 (1757)
Q Consensus 396 ~sIafSpdG~~LasGs~DG-~IrIWDi~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~~ 474 (1757)
..++|+|+|+++++.+.+. .+..++..+.. ....+... ..-..+.+.+++
T Consensus 179 ~~v~~spdGk~a~vt~~nse~~~~id~~t~~---------~~d~i~v~-n~p~~~~~~~dG------------------- 229 (441)
T d1qnia2 179 DNTDADYTGKYATSTCYNSERAVDLAGTMRN---------DRDWVVVF-NVERIAAAVKAG------------------- 229 (441)
T ss_dssp CCEEECSSSSEEEEEESCTTCCSSHHHHTCS---------SBCEEEEE-EHHHHHHHHHTT-------------------
T ss_pred CCEEECCCCCEEEEEECCCCCEEEEECCCCC---------EEEEEEEC-CCCCEEEEECCC-------------------
T ss_conf 5469879999899985178731898515712---------17899968-851107996699-------------------
Q ss_pred CCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCE
Q ss_conf 45555787089981899099992788888852222112223569999999999999993110489997129998579979
Q 000268 475 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRF 554 (1757)
Q Consensus 475 ~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~ 554 (1757)
..+..+.++.+.++...... .............+.++|||++
T Consensus 230 --------k~~~v~~~~v~vvd~~~~~~------------------------------v~~~IPvgksPhGv~vSPDGky 271 (441)
T d1qnia2 230 --------NFKTIGDSKVPVVDGRGESE------------------------------FTRYIPVPKNPHGLNTSPDGKY 271 (441)
T ss_dssp --------CCBCCTTCCCCEEECSSSCS------------------------------SEEEECCBSSCCCEEECTTSCE
T ss_pred --------CEEEECCCCCEEEECCCCCC------------------------------EEEEEECCCCCCCCEECCCCCE
T ss_conf --------99996999828998036870------------------------------6899717988667268999878
Q ss_pred EEE-EECCCEEEEEECCCCCE--------EEEEECC---CCCEEEEEEECCCCCEEEEEECCCCEEEEECCC--------
Q ss_conf 999-95398399998899945--------8998079---988499999039994999995899299996899--------
Q 000268 555 VLA-AIMDCRICVWNAADGSL--------VHSLTGH---TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE-------- 614 (1757)
Q Consensus 555 LvS-Gs~DG~I~IWDl~tgkl--------i~tL~gH---~~~VtsIafSPdd~~lLaSgs~DG~IrIWDi~t-------- 614 (1757)
+++ +..+++|.|||+.+... ...+.++ .-.....+|.+ ++..+.+...|..|..|++..
T Consensus 272 l~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~-~g~~yts~~~ds~v~kw~~~~~~~~~~~~ 350 (441)
T d1qnia2 272 FIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDG-RGNAYTTLFIDSQVCKWNIADAIKHYNGD 350 (441)
T ss_dssp EEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEEEEEEHHHHHHHHTTC
T ss_pred EEEECCCCCCEEEEEEEHHHHHHHCCCCCCEEEEEECCCCCCCCCCEECC-CCEEEECCCCCCEEEEECCCHHHHHHCCC
T ss_conf 99907759938999832244575256884247996014554766522657-85599852443168972354221332267
Q ss_pred --CCEEEEE-----EECCCCEEEEEECCCCCEEEEEECCC
Q ss_conf --9228998-----60675257999947999999995797
Q 000268 615 --GIPIRIY-----EISRFRLVDGKFSPDGASIILSDDVG 647 (1757)
Q Consensus 615 --g~~i~~l-----~~~~~~ItslafSPDG~~LAsgs~DG 647 (1757)
...+..+ .+|...+.+.+|+|||+||++++.-.
T Consensus 351 ~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s 390 (441)
T d1qnia2 351 RVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFS 390 (441)
T ss_dssp CCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCC
T ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC
T ss_conf 7765686453266898775245422389884899657444
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=5.6e-09 Score=72.27 Aligned_cols=319 Identities=10% Similarity=0.060 Sum_probs=143.5
Q ss_pred ECCCCCEEEEECCCCEEEEEECCCCEEEEEEEC---CCCCEEEEEECCCCCEEEEEE---------CCCEEEEEECCCCC
Q ss_conf 979999999981872699992678708899806---789859999957999999984---------89669999789997
Q 000268 251 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRG---HEGDITDLAVSSNNALVASAS---------NDCIIRVWRLPDGL 318 (1757)
Q Consensus 251 FSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~g---Hs~~VtsIafSPDg~lLASgS---------~DGtIrIWDl~tg~ 318 (1757)
|.+++.++.. ..+|.|.+|++.+++....+.. ....+....||||+++|+... ..+.+.++|+.++.
T Consensus 24 W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~ 102 (465)
T d1xfda1 24 WISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD 102 (465)
T ss_dssp BSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred EECCCCEEEE-ECCCCEEEEECCCCCEEEEECCCCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECCCCEEEEECCCCC
T ss_conf 9179848999-289969999878998899872764444553213898988869999845100476033528999856884
Q ss_pred CEEEE--CCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 05884--1778855999952799950799999289919999467897655252379996324888888888999996438
Q 000268 319 PISVL--RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF 396 (1757)
Q Consensus 319 ~i~~l--~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~ 396 (1757)
..... ......+....|+|+|+ .|+-.. ++.|.+.+...+...+............|..... ........-.
T Consensus 103 ~~~l~~~~~~~~~l~~~~wSPDG~---~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~v--yeee~~~~~~ 176 (465)
T d1xfda1 103 PQSLDPPEVSNAKLQYAGWGPKGQ---QLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWL--YEEEILKTHI 176 (465)
T ss_dssp CEECCCTTCCSCCCSBCCBCSSTT---CEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHH--HHHTTSSSSE
T ss_pred EEECCCCCCCCCCCCEEEECCCCC---EEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEECCCCCHH--HHHHHCCCCC
T ss_conf 564157667764311002426785---699996-1329999548996589711267660443664310--0123036643
Q ss_pred EEEECCCCCEEEEEEC-CCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9998779988999508-950999638999998999998402330377888007998267622333345688788887554
Q 000268 397 CCAFNANGTVFVTGSS-DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475 (1757)
Q Consensus 397 sIafSpdG~~LasGs~-DG~IrIWDi~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~~~ 475 (1757)
++.|||||+.||.... +..|..+.+.... ......+..+.+...|
T Consensus 177 a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~--------------~~~~p~~~~~~Yp~~G-------------------- 222 (465)
T d1xfda1 177 AHWWSPDGTRLAYAAINDSRVPIMELPTYT--------------GSIYPTVKPYHYPKAG-------------------- 222 (465)
T ss_dssp EEEECTTSSEEEEEEEECTTSCEEEECCCS--------------SSSSCCCEEEECCBTT--------------------
T ss_pred EEEECCCCCEEEEEEECCCCCCEEECCCCC--------------CCCCCEEEEEECCCCC--------------------
T ss_conf 489779898689999536666146412344--------------5444313345302568--------------------
Q ss_pred CCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCEE
Q ss_conf 55557870899818990999927888888522221122235699999999999999931104899971299985799799
Q 000268 476 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFV 555 (1757)
Q Consensus 476 ~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~L 555 (1757)
.. .....+.++++.++...... .+.........-+..+.|+++++++
T Consensus 223 ------~~----np~~~l~v~d~~~~~~~~~~-----------------------~~~~~~~~~~~y~~~~~W~~d~~~~ 269 (465)
T d1xfda1 223 ------SE----NPSISLHVIGLNGPTHDLEM-----------------------MPPDDPRMREYYITMVKWATSTKVA 269 (465)
T ss_dssp ------SC----CCEEEEEEEESSSSCCCEEC-----------------------CCCCCGGGSSEEEEEEEESSSSEEE
T ss_pred ------CC----CCCEEEEEEECCCCCEEEEE-----------------------ECCCCCCCCCCEEEEEEECCCCEEE
T ss_conf ------88----97213799836898178999-----------------------5257676666304566875799389
Q ss_pred EEEEC----CCEEEEEECCCCCEEEEEECCCC-CE----EEEEEECCCCCEEEE--EECCC--CEEEEEC------CCCC
Q ss_conf 99953----98399998899945899807998-84----999990399949999--95899--2999968------9992
Q 000268 556 LAAIM----DCRICVWNAADGSLVHSLTGHTE-ST----YVLDVHPFNPRIAMS--AGYDG--KTIVWDI------WEGI 616 (1757)
Q Consensus 556 vSGs~----DG~I~IWDl~tgkli~tL~gH~~-~V----tsIafSPdd~~lLaS--gs~DG--~IrIWDi------~tg~ 616 (1757)
+.... ...|.++|..+|++...+..... .| ....|++++..+++. .-.+| .+....+ ..+.
T Consensus 270 ~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~ 349 (465)
T d1xfda1 270 VTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND 349 (465)
T ss_dssp EEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC
T ss_pred EEEECCCCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCEEECCCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCC
T ss_conf 99974100301379970799927877897278517356786057468980577776543166716899831566667886
Q ss_pred EEEEEEECCCCEEEE-EECCCCCEEEEE
Q ss_conf 289986067525799-994799999999
Q 000268 617 PIRIYEISRFRLVDG-KFSPDGASIILS 643 (1757)
Q Consensus 617 ~i~~l~~~~~~Itsl-afSPDG~~LAsg 643 (1757)
.+..+..+.-.|..+ .|+.++..|...
T Consensus 350 ~~~~LT~G~w~V~~i~~~d~~~~~vyF~ 377 (465)
T d1xfda1 350 NIQSITSGDWDVTKILAYDEKGNKIYFL 377 (465)
T ss_dssp CCCBSCCSSSCEEEEEEEETTTTEEEEE
T ss_pred EEEEECCCCCEEEEEEEECCCCCEEEEE
T ss_conf 2698226992199778983899999999
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.35 E-value=6.2e-09 Score=71.96 Aligned_cols=18 Identities=11% Similarity=0.113 Sum_probs=8.3
Q ss_pred CEEEEEECCCCCEEEEEE
Q ss_conf 859999957999999984
Q 000268 287 DITDLAVSSNNALVASAS 304 (1757)
Q Consensus 287 ~VtsIafSPDg~lLASgS 304 (1757)
.+..|+|++++++|.++.
T Consensus 41 ~~s~la~s~d~~~ly~~~ 58 (365)
T d1jofa_ 41 PISWMTFDHERKNIYGAA 58 (365)
T ss_dssp CCSEEEECTTSSEEEEEE
T ss_pred CCCEEEECCCCCEEEEEE
T ss_conf 977799948989999993
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.32 E-value=2.7e-08 Score=67.65 Aligned_cols=126 Identities=17% Similarity=0.089 Sum_probs=80.7
Q ss_pred CCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEE
Q ss_conf 23226899816798789999979999999981872699992678708899806789859999957999999984896699
Q 000268 231 QKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIR 310 (1757)
Q Consensus 231 ~~~k~i~tL~GH~~~V~sIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~gHs~~VtsIafSPDg~lLASgS~DGtIr 310 (1757)
...+.+.++.... .+..++++|||+++++...++.|..|+.. +.. ..+......+.+++|.++++++++...++.+.
T Consensus 16 ~~~~v~~~~p~~~-~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~-~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~ 92 (302)
T d2p4oa1 16 APAKIITSFPVNT-FLENLASAPDGTIFVTNHEVGEIVSITPD-GNQ-QIHATVEGKVSGLAFTSNGDLVATGWNADSIP 92 (302)
T ss_dssp CCEEEEEEECTTC-CEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEEECSSEEEEEEECTTSCEEEEEECTTSCE
T ss_pred CCCCEEEECCCCC-CCCCEEECCCCCEEEEECCCCEEEEEECC-CCE-EEEECCCCCCCEEEECCCCCEEEEECCCCEEE
T ss_conf 8620788888998-84787799998899996889989999089-988-99971799853689867788699832895378
Q ss_pred EEECCCCCC-EEEE--CCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECCCC
Q ss_conf 997899970-5884--177885599995279995079999928991999946789
Q 000268 311 VWRLPDGLP-ISVL--RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 362 (1757)
Q Consensus 311 IWDl~tg~~-i~~l--~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg 362 (1757)
+|+...... ...+ .........+++.+++. ++++.+.++.+..++...+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~---~~v~~~~~~~i~~~~~~~~ 144 (302)
T d2p4oa1 93 VVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ---YLTADSYRGAIWLIDVVQP 144 (302)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEESSSSE---EEEEETTTTEEEEEETTTT
T ss_pred EEEECCCCCCEEECCCCCCCCCCCEEEECCCCC---EEEECCCCCCCEEEECCCC
T ss_conf 887101111012102357863221667715797---8750356554102421687
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.28 E-value=3.4e-08 Score=66.95 Aligned_cols=128 Identities=9% Similarity=0.032 Sum_probs=83.6
Q ss_pred CCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECC
Q ss_conf 67870889980678985999995799999998489669999789997058841778855999952799950799999289
Q 000268 272 METAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD 351 (1757)
Q Consensus 272 i~tg~~l~tL~gHs~~VtsIafSPDg~lLASgS~DGtIrIWDl~tg~~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~D 351 (1757)
+...+.+..+.. ...+..+++.|||+++++...++.|..|+.. +. ...+......+.+++|.+++. ++++...+
T Consensus 15 ~~~~~v~~~~p~-~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~dG~---l~v~~~~~ 88 (302)
T d2p4oa1 15 LAPAKIITSFPV-NTFLENLASAPDGTIFVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGLAFTSNGD---LVATGWNA 88 (302)
T ss_dssp CCCEEEEEEECT-TCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEEECSSEEEEEEECTTSC---EEEEEECT
T ss_pred CCCCCEEEECCC-CCCCCCEEECCCCCEEEEECCCCEEEEEECC-CC-EEEEECCCCCCCEEEECCCCC---EEEEECCC
T ss_conf 786207888889-9884787799998899996889989999089-98-899971799853689867788---69983289
Q ss_pred CCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCC
Q ss_conf 91999946789765525237999632488888888899999643899987799889995089509996389
Q 000268 352 GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNAC 422 (1757)
Q Consensus 352 GtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sIafSpdG~~LasGs~DG~IrIWDi~ 422 (1757)
+.+..|+............. .........+++.+++.++++...++.+..++..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~ 142 (302)
T d2p4oa1 89 DSIPVVSLVKSDGTVETLLT-----------------LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVV 142 (302)
T ss_dssp TSCEEEEEECTTSCEEEEEE-----------------CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETT
T ss_pred CEEEEEEECCCCCCEEECCC-----------------CCCCCCCCEEEECCCCCEEEECCCCCCCEEEECC
T ss_conf 53788871011110121023-----------------5786322166771579787503565541024216
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.27 E-value=3.9e-08 Score=66.49 Aligned_cols=93 Identities=10% Similarity=-0.011 Sum_probs=33.2
Q ss_pred EEEEECCCCCEEEEE-CCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEECC
Q ss_conf 999997999999998-1872699992678708899806789859999957999999984896699997899970588417
Q 000268 247 YCAIFDRSGRYVITG-SDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRG 325 (1757)
Q Consensus 247 ~sIaFSPDG~~LATG-S~DGtIkIWDi~tg~~l~tL~gHs~~VtsIafSPDg~lLASgS~DGtIrIWDl~tg~~i~~l~g 325 (1757)
..++++++|...++. +..+.|..++...................+++++++.++++....+.+++++..+...+....
T Consensus 17 ~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~- 95 (260)
T d1rwia_ 17 SGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD- 95 (260)
T ss_dssp EEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCC-
T ss_pred CEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCEEEEECCCCCEEEEEEEECEEEEEEECCCEEEEEEE-
T ss_conf 8899969999999971899889999389966897436986684089993899889863100003554211200000010-
Q ss_pred CCCCEEEEEECCCCC
Q ss_conf 788559999527999
Q 000268 326 HTAAVTAIAFSPRPG 340 (1757)
Q Consensus 326 H~~~VtsIafSPdg~ 340 (1757)
......++++.+++.
T Consensus 96 ~~~~p~~iavd~~g~ 110 (260)
T d1rwia_ 96 GLNYPEGLAVDTQGA 110 (260)
T ss_dssp SCCSEEEEEECTTCC
T ss_pred EEEECCCCCCCCCCE
T ss_conf 000000002455320
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=6.8e-08 Score=64.86 Aligned_cols=73 Identities=15% Similarity=0.149 Sum_probs=38.2
Q ss_pred EEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECC---CEEEEEECCCCCCEEEECCCCCCEEEEEECCCCC
Q ss_conf 69999267870889980678985999995799999998489---6699997899970588417788559999527999
Q 000268 266 LVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND---CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPG 340 (1757)
Q Consensus 266 tIkIWDi~tg~~l~tL~gHs~~VtsIafSPDg~lLASgS~D---GtIrIWDl~tg~~i~~l~gH~~~VtsIafSPdg~ 340 (1757)
.|.|-|.. |.....+..+...+...+|||||+.||..... ..+.+.+...+... .+..+........|+|++.
T Consensus 20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~ 95 (269)
T d2hqsa1 20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGS 95 (269)
T ss_dssp EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSS
T ss_pred EEEEECCC-CCCCEEEECCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCEE-EEEEEECCCCCCEECCCCC
T ss_conf 99999289-9976798658984260388789998999981526751344311367506-7764202454302448898
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.22 E-value=8.3e-08 Score=64.28 Aligned_cols=109 Identities=6% Similarity=-0.015 Sum_probs=57.8
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE
Q ss_conf 12999857997999995398399998899945899807998849999903999499999589929999689992289986
Q 000268 543 VNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE 622 (1757)
Q Consensus 543 VtsIafSPDG~~LvSGs~DG~I~IWDl~tgkli~tL~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDi~tg~~i~~l~ 622 (1757)
...+++++++.++++...++.|..++...................|++.+ ++.++++....+.|..++..... ...+.
T Consensus 142 p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~-~g~l~vsd~~~~~i~~~~~~~~~-~~~~~ 219 (260)
T d1rwia_ 142 PDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTT-STVLP 219 (260)
T ss_dssp CCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECT-TCCEEEEETTTTEEEEECTTCSC-CEECC
T ss_pred CCEEEECCCCCEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEE-EEEEEEEECCCCEEEEEECCCCE-EEEEC
T ss_conf 52054548998864102564332223431001222101147876312310-00134321489989999699976-99970
Q ss_pred -ECCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf -0675257999947999999995797099999
Q 000268 623 -ISRFRLVDGKFSPDGASIILSDDVGQLYILN 653 (1757)
Q Consensus 623 -~~~~~ItslafSPDG~~LAsgs~DG~I~IWd 653 (1757)
..-.....++++++|.++++-..++.|+.++
T Consensus 220 ~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~ 251 (260)
T d1rwia_ 220 FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT 251 (260)
T ss_dssp CCSCCCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred CCCCCCEEEEEEECCCCEEEEECCCCEEEEEE
T ss_conf 69989817999908999999979999899995
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=1.9e-07 Score=61.84 Aligned_cols=111 Identities=10% Similarity=0.016 Sum_probs=65.7
Q ss_pred CEEEEEECCCCCEEEEEC---------CCCEEEEEECCCCEEEEEEE--CCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 789999979999999981---------87269999267870889980--6789859999957999999984896699997
Q 000268 245 AVYCAIFDRSGRYVITGS---------DDRLVKIWSMETAYCLASCR--GHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1757)
Q Consensus 245 ~V~sIaFSPDG~~LATGS---------~DGtIkIWDi~tg~~l~tL~--gHs~~VtsIafSPDg~lLASgS~DGtIrIWD 313 (1757)
.+....|||||++|+... ..+.+.++|+.++....... .....+....|||||+.||-.. ++.|.+.+
T Consensus 62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~ 140 (465)
T d1xfda1 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCA 140 (465)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEES
T ss_pred CCCEEEECCCCCEEEEEECCCCEEEEECCCCEEEEECCCCCEEECCCCCCCCCCCCEEEECCCCCEEEEEE-CCEEEEEE
T ss_conf 53213898988869999845100476033528999856884564157667764311002426785699996-13299995
Q ss_pred CCCCCCEEEEC-CCCCCE-----------------EEEEECCCCCCEEEEEEEE-CCCCEEEEEC
Q ss_conf 89997058841-778855-----------------9999527999507999992-8991999946
Q 000268 314 LPDGLPISVLR-GHTAAV-----------------TAIAFSPRPGSVYQLLSSS-DDGTCRIWDA 359 (1757)
Q Consensus 314 l~tg~~i~~l~-gH~~~V-----------------tsIafSPdg~~~~~LvSgs-~DGtIrIWDl 359 (1757)
..++..++... +..+.| .++-|+|||+ +|+... .+..|..+.+
T Consensus 141 ~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk---~iaf~~~D~s~V~~~~~ 202 (465)
T d1xfda1 141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT---RLAYAAINDSRVPIMEL 202 (465)
T ss_dssp SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS---EEEEEEEECTTSCEEEE
T ss_pred CCCCCEEEEECCCCCCEEECCCCCHHHHHHHCCCCCEEEECCCCC---EEEEEEECCCCCCEEEC
T ss_conf 489965897112676604436643100123036643489779898---68999953666614641
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.13 E-value=2.3e-07 Score=61.29 Aligned_cols=14 Identities=21% Similarity=0.339 Sum_probs=5.9
Q ss_pred CCCEEEEEECCCCC
Q ss_conf 88559999527999
Q 000268 327 TAAVTAIAFSPRPG 340 (1757)
Q Consensus 327 ~~~VtsIafSPdg~ 340 (1757)
...+...+|||||+
T Consensus 38 ~~~~~sP~wSPDGk 51 (269)
T d2hqsa1 38 PQPLMSPAWSPDGS 51 (269)
T ss_dssp SSCEEEEEECTTSS
T ss_pred CCCEEEEEECCCCC
T ss_conf 98426038878999
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.10 E-value=3.1e-07 Score=60.38 Aligned_cols=112 Identities=12% Similarity=0.144 Sum_probs=66.4
Q ss_pred EEEEECCCCC-----EEEEEECCCEEEEEECCCCCEEE------EEEC-CCCCEEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 2999857997-----99999539839999889994589------9807-9988499999039994999995899299996
Q 000268 544 NMIVWSLDNR-----FVLAAIMDCRICVWNAADGSLVH------SLTG-HTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1757)
Q Consensus 544 tsIafSPDG~-----~LvSGs~DG~I~IWDl~tgkli~------tL~g-H~~~VtsIafSPdd~~lLaSgs~DG~IrIWD 611 (1757)
+.++|++++. ++++-+..+.|..|++.....+. .+.+ .....-.+++.. ++++.++....+.|.+|+
T Consensus 175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~-~GnlyVa~~~~g~I~~~d 253 (314)
T d1pjxa_ 175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSSHIEVFG 253 (314)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEEEEC
T ss_pred EEEEECCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEEC-CCCEEEEECCCCEEEEEE
T ss_conf 1369978877630379998602431177611676543015689971335666410257834-785799982799999996
Q ss_pred CCCCCEEEEEEECCCCEEEEEECCCCCEEEE-EECCCEEEEEECCC
Q ss_conf 8999228998606752579999479999999-95797099999899
Q 000268 612 IWEGIPIRIYEISRFRLVDGKFSPDGASIIL-SDDVGQLYILNTGQ 656 (1757)
Q Consensus 612 i~tg~~i~~l~~~~~~ItslafSPDG~~LAs-gs~DG~I~IWdl~s 656 (1757)
...+..+..+.......++++|.||++.|.+ ....|.|+.+++..
T Consensus 254 p~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 254 PDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCC
T ss_conf 9999799999799998789999289899999987899199997899
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.02 E-value=6.4e-07 Score=58.20 Aligned_cols=266 Identities=12% Similarity=0.088 Sum_probs=142.5
Q ss_pred CCCEEEEEECCCCCEEEEECC-------CCEEEEEECCCCEEEEEEEC----CCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 987899999799999999818-------72699992678708899806----7898599999579999999848966999
Q 000268 243 RNAVYCAIFDRSGRYVITGSD-------DRLVKIWSMETAYCLASCRG----HEGDITDLAVSSNNALVASASNDCIIRV 311 (1757)
Q Consensus 243 ~~~V~sIaFSPDG~~LATGS~-------DGtIkIWDi~tg~~l~tL~g----Hs~~VtsIafSPDg~lLASgS~DGtIrI 311 (1757)
-...-.++|+++|++.++... ++.|..|+..++........ ..+.-..++|.+++..|+++.....|..
T Consensus 17 ~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~ 96 (314)
T d1pjxa_ 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLV 96 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred CCCCEEEEEECCCCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEE
T ss_conf 98971739969999999987540234529999999899995999977765567885306999079998999977983999
Q ss_pred EECCCCCCEEEECCCCC----CEEEEEECCCCCCEEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 97899970588417788----55999952799950799999289919999467897655252379996324888888888
Q 000268 312 WRLPDGLPISVLRGHTA----AVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSS 387 (1757)
Q Consensus 312 WDl~tg~~i~~l~gH~~----~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~ 387 (1757)
.+..............+ ..+.+++.+++. ..++ ...+.+..|+.....
T Consensus 97 ~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~---lyvt-d~~~~~~~~~~~~~~------------------------ 148 (314)
T d1pjxa_ 97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN---LWIT-APAGEVAPADYTRSM------------------------ 148 (314)
T ss_dssp EETTSCEEECCSBCTTSCBCBCCCEEEECTTSC---EEEE-ECBCBCTTSCCCBTT------------------------
T ss_pred EECCCCEEEEEECCCCCCCCCCCCEEEECCCCC---EEEE-CCCCCCCCCCCCCEE------------------------
T ss_conf 947774799973343245457872789888998---9991-486675432011000------------------------
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 99999643899987799889995089509996389999989999984023303778880079982676223333456887
Q 000268 388 AGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSK 467 (1757)
Q Consensus 388 ~~~~~~~V~sIafSpdG~~LasGs~DG~IrIWDi~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~ 467 (1757)
....+.+ ..+.++|...... .....-+.++|++++-...
T Consensus 149 -~~~~G~v--~~~~~dg~~~~~~------------------------------~~~~~pNGi~~~~d~d~~~-------- 187 (314)
T d1pjxa_ 149 -QEKFGSI--YCFTTDGQMIQVD------------------------------TAFQFPNGIAVRHMNDGRP-------- 187 (314)
T ss_dssp -SSSCEEE--EEECTTSCEEEEE------------------------------EEESSEEEEEEEECTTSCE--------
T ss_pred -CCCCCEE--EEEEECCCEEEEE------------------------------CCCCEEEEEEECCCCCCCE--------
T ss_conf -2688438--9995257403750------------------------------7853221369978877630--------
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC-CCCCCEEEE
Q ss_conf 8888755455557870899818990999927888888522221122235699999999999999931104-899971299
Q 000268 468 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL-PTPRGVNMI 546 (1757)
Q Consensus 468 ~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~-~h~~~VtsI 546 (1757)
..++++-+..+.|..|++...... .. ...+ ..+. ......-.+
T Consensus 188 -------------~~lyv~d~~~~~i~~~d~~~~g~~---~~-~~~~-------------------~~~~~~~~~~pdGi 231 (314)
T d1pjxa_ 188 -------------YQLIVAETPTKKLWSYDIKGPAKI---EN-KKVW-------------------GHIPGTHEGGADGM 231 (314)
T ss_dssp -------------EEEEEEETTTTEEEEEEEEETTEE---EE-EEEE-------------------EECCCCSSCEEEEE
T ss_pred -------------EEEEEEEECCCCEEEEECCCCCCC---CE-EEEE-------------------EECCCCCCCCCEEE
T ss_conf -------------379998602431177611676543---01-5689-------------------97133566641025
Q ss_pred EECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 9857997999995398399998899945899807998849999903999499999589929999689
Q 000268 547 VWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1757)
Q Consensus 547 afSPDG~~LvSGs~DG~I~IWDl~tgkli~tL~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDi~ 613 (1757)
++..+|++.++....+.|.+|+...+..+..+.......++++|.|+...++++.+..+.|...++.
T Consensus 232 avD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 232 DFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EEECCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEECC
T ss_conf 7834785799982799999996999979999979999878999928989999998789919999789
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.00 E-value=7.9e-07 Score=57.57 Aligned_cols=73 Identities=10% Similarity=0.136 Sum_probs=29.4
Q ss_pred EEEEEECCCCCEEEEEEC-CCEEEEEECCC-CCEEE--EEE--CCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf 129998579979999953-98399998899-94589--980--799884999990399949999958992999968999
Q 000268 543 VNMIVWSLDNRFVLAAIM-DCRICVWNAAD-GSLVH--SLT--GHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG 615 (1757)
Q Consensus 543 VtsIafSPDG~~LvSGs~-DG~I~IWDl~t-gkli~--tL~--gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDi~tg 615 (1757)
+.++.|+|||++++++.. ...|.+|+... +.+.. .+. ........++|+|++..+.++...++.|.+|++..+
T Consensus 147 ~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~ 225 (365)
T d1jofa_ 147 IHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA 225 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred CEEEEECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCC
T ss_conf 1597888999989982079987999970688716652511112788740899988998669995158998999995598
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.95 E-value=1.2e-06 Score=56.37 Aligned_cols=114 Identities=18% Similarity=0.185 Sum_probs=62.4
Q ss_pred CEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE--CCCCCEEEEEEECCCCCEEEEEEC-CCCEEEEECCCCCEE
Q ss_conf 71299985799799999539839999889994589980--799884999990399949999958-992999968999228
Q 000268 542 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT--GHTESTYVLDVHPFNPRIAMSAGY-DGKTIVWDIWEGIPI 618 (1757)
Q Consensus 542 ~VtsIafSPDG~~LvSGs~DG~I~IWDl~tgkli~tL~--gH~~~VtsIafSPdd~~lLaSgs~-DG~IrIWDi~tg~~i 618 (1757)
....+++.+++..+++....+.|++|+. +|+.+..+. +.......|++.+ ++.++++-.. ++.|.+|+. +|+.+
T Consensus 158 ~~~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~-~G~i~Vad~~~~~~v~~f~~-~G~~~ 234 (279)
T d1q7fa_ 158 FPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQ-DGQLI 234 (279)
T ss_dssp SEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECT-TSCEE
T ss_pred CCCEEEECCCEEEEEEECCCCCEEEEEC-CCCEEEEECCCCCCCCCCCCCCCC-CCEEEEEECCCCCEEEEECC-CCCEE
T ss_conf 6624320120017862013551002304-794445301132114876232314-78699997899808999999-99999
Q ss_pred EEEEECC--CCEEEEEECCCCCEEEEEECCCEEEEEECCCCCC
Q ss_conf 9986067--5257999947999999995797099999899831
Q 000268 619 RIYEISR--FRLVDGKFSPDGASIILSDDVGQLYILNTGQGES 659 (1757)
Q Consensus 619 ~~l~~~~--~~ItslafSPDG~~LAsgs~DG~I~IWdl~sGe~ 659 (1757)
..+.... .....+++.+||.+ ++++.+..|.+|...+..+
T Consensus 235 ~~~~~~~~~~~p~~vav~~dG~l-~V~~~n~~v~~fr~~~~~~ 276 (279)
T d1q7fa_ 235 SALESKVKHAQCFDVALMDDGSV-VLASKDYRLYIYRYVQLAP 276 (279)
T ss_dssp EEEEESSCCSCEEEEEEETTTEE-EEEETTTEEEEEECSCCCC
T ss_pred EEEECCCCCCCEEEEEEECCCCE-EEEECCCEEEEEEEEEECC
T ss_conf 99968888898837999089919-9991899699987220357
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.89 E-value=2e-06 Score=54.87 Aligned_cols=241 Identities=9% Similarity=0.119 Sum_probs=126.9
Q ss_pred CEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEEC------CCCCEEEEEECCCCC-EEEE-EECCCEEEEEECCC
Q ss_conf 789999979999999981872699992678708899806------789859999957999-9999-84896699997899
Q 000268 245 AVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRG------HEGDITDLAVSSNNA-LVAS-ASNDCIIRVWRLPD 316 (1757)
Q Consensus 245 ~V~sIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~g------Hs~~VtsIafSPDg~-lLAS-gS~DGtIrIWDl~t 316 (1757)
.-..++++++|+.+++-..+..|++||.. |..+..+.. .......+++..+.. .+++ .+.++.|.+++. .
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~ 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T
T ss_pred CCCEEEECCCCCEEEEECCCCEEEEEECC-CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC-C
T ss_conf 90079994999899997998989999699-999998166578866422663000123445520000477531000002-5
Q ss_pred CCCEEEEC-CCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 97058841-77885599995279995079999928991999946789765525237999632488888888899999643
Q 000268 317 GLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 395 (1757)
Q Consensus 317 g~~i~~l~-gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V 395 (1757)
+.....+. ........+++.+++. .+++....+.+.+++.. +..+..+.. ..+....
T Consensus 102 g~~~~~~~~~~~~~p~~~avd~~G~---i~v~~~~~~~~~~~~~~-g~~~~~~g~------------------~~~~~~~ 159 (279)
T d1q7fa_ 102 GQFVRKFGATILQHPRGVTVDNKGR---IIVVECKVMRVIIFDQN-GNVLHKFGC------------------SKHLEFP 159 (279)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSC---EEEEETTTTEEEEECTT-SCEEEEEEC------------------TTTCSSE
T ss_pred CCCEEECCCCCCCCCCEECCCCCCC---EEEEEECCCEEEEECCC-CCEEECCCC------------------CCCCCCC
T ss_conf 6302403888642542000014784---79996326325676268-750100220------------------0102566
Q ss_pred EEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89998779988999508950999638999998999998402330377888007998267622333345688788887554
Q 000268 396 FCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475 (1757)
Q Consensus 396 ~sIafSpdG~~LasGs~DG~IrIWDi~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~~~ 475 (1757)
..+++.+++.++++....+.|.+|+... ..+..+
T Consensus 160 ~~i~~d~~g~i~v~d~~~~~V~~~d~~G----------~~~~~~------------------------------------ 193 (279)
T d1q7fa_ 160 NGVVVNDKQEIFISDNRAHCVKVFNYEG----------QYLRQI------------------------------------ 193 (279)
T ss_dssp EEEEECSSSEEEEEEGGGTEEEEEETTC----------CEEEEE------------------------------------
T ss_pred CEEEECCCEEEEEEECCCCCEEEEECCC----------CEEEEE------------------------------------
T ss_conf 2432012001786201355100230479----------444530------------------------------------
Q ss_pred CCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCEE
Q ss_conf 55557870899818990999927888888522221122235699999999999999931104899971299985799799
Q 000268 476 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFV 555 (1757)
Q Consensus 476 ~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~L 555 (1757)
+. .+.......+++.++|..+
T Consensus 194 ------------g~-----------------------------------------------~g~~~~P~giavD~~G~i~ 214 (279)
T d1q7fa_ 194 ------------GG-----------------------------------------------EGITNYPIGVGINSNGEIL 214 (279)
T ss_dssp ------------SC-----------------------------------------------TTTSCSEEEEEECTTCCEE
T ss_pred ------------CC-----------------------------------------------CCCCCCCCCCCCCCCCEEE
T ss_conf ------------11-----------------------------------------------3211487623231478699
Q ss_pred EEEEC-CCEEEEEECCCCCEEEEEECC--CCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCE
Q ss_conf 99953-983999988999458998079--988499999039994999995899299996899922
Q 000268 556 LAAIM-DCRICVWNAADGSLVHSLTGH--TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIP 617 (1757)
Q Consensus 556 vSGs~-DG~I~IWDl~tgkli~tL~gH--~~~VtsIafSPdd~~lLaSgs~DG~IrIWDi~tg~~ 617 (1757)
++-.. ++.|.+|+. +|+.+.++... ......|++.| ++.+++ +..+..|++|......+
T Consensus 215 Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~-dG~l~V-~~~n~~v~~fr~~~~~~ 276 (279)
T d1q7fa_ 215 IADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMD-DGSVVL-ASKDYRLYIYRYVQLAP 276 (279)
T ss_dssp EEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEET-TTEEEE-EETTTEEEEEECSCCCC
T ss_pred EEECCCCCEEEEECC-CCCEEEEEECCCCCCCEEEEEEEC-CCCEEE-EECCCEEEEEEEEEECC
T ss_conf 997899808999999-999999996888889883799908-991999-91899699987220357
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.79 E-value=4.1e-06 Score=52.67 Aligned_cols=66 Identities=12% Similarity=0.091 Sum_probs=48.6
Q ss_pred ECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE
Q ss_conf 816798789999979999999981872699992678708899806789859999957999999984
Q 000268 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS 304 (1757)
Q Consensus 239 L~GH~~~V~sIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~gHs~~VtsIafSPDg~lLASgS 304 (1757)
+......+..++|+++|++.++-...+.|..|+..++.....+.........++|.++|.++++..
T Consensus 35 ~~~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~ 100 (319)
T d2dg1a1 35 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYL 100 (319)
T ss_dssp EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEEC
T ss_pred ECCCCCCCEECEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEC
T ss_conf 146886747078999999999977999999998999959999948998703899999999999956
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.79 E-value=4.3e-06 Score=52.55 Aligned_cols=246 Identities=14% Similarity=0.089 Sum_probs=140.2
Q ss_pred CCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEEC----CCCEEEEECC
Q ss_conf 898599999579999999848966999978999705884177885599995279995079999928----9919999467
Q 000268 285 EGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD----DGTCRIWDAR 360 (1757)
Q Consensus 285 s~~VtsIafSPDg~lLASgS~DGtIrIWDl~tg~~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~----DGtIrIWDl~ 360 (1757)
...+..++|.++|++.++-...+.|..|+..++.....+.........++|.+++. ++++... .+.+...+..
T Consensus 39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~---l~va~~~~~~~~~~i~~~~~~ 115 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGR---LFVCYLGDFKSTGGIFAATEN 115 (319)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSC---EEEEECTTSSSCCEEEEECTT
T ss_pred CCCCEECEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCC---EEEEECCCCCCCEEEEEECCC
T ss_conf 86747078999999999977999999998999959999948998703899999999---999956897311049987389
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEEC
Q ss_conf 89765525237999632488888888899999643899987799889995089509996389999989999984023303
Q 000268 361 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLS 440 (1757)
Q Consensus 361 tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sIafSpdG~~LasGs~DG~IrIWDi~t~~~~~s~~~~~~i~~l~ 440 (1757)
.......... ......+..+++.++|.+.++...... .
T Consensus 116 ~~~~~~~~~~------------------~~~~~~~nd~~~d~~G~l~vtd~~~~~-----~------------------- 153 (319)
T d2dg1a1 116 GDNLQDIIED------------------LSTAYCIDDMVFDSKGGFYFTDFRGYS-----T------------------- 153 (319)
T ss_dssp SCSCEEEECS------------------SSSCCCEEEEEECTTSCEEEEECCCBT-----T-------------------
T ss_pred CCEEEEECCC------------------CCCCCCCCCEEEEECCCEEECCCCCCC-----C-------------------
T ss_conf 9636444267------------------775558752267730653200135400-----2-------------------
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77888007998267622333345688788887554555578708998189909999278888885222211222356999
Q 000268 441 GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPP 520 (1757)
Q Consensus 441 gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~ 520 (1757)
...+. ...+.+++ +.+...
T Consensus 154 ~~~g~--v~~~~~dg-----------------------------------~~~~~~------------------------ 172 (319)
T d2dg1a1 154 NPLGG--VYYVSPDF-----------------------------------RTVTPI------------------------ 172 (319)
T ss_dssp BCCEE--EEEECTTS-----------------------------------CCEEEE------------------------
T ss_pred CCCCE--EEEEECCC-----------------------------------CEEEEE------------------------
T ss_conf 57421--57884166-----------------------------------335788------------------------
Q ss_pred CCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCEE-EEEECCCEEEEEECCC-CCEEEE-------EECCCCCEEEEEEE
Q ss_conf 99999999999931104899971299985799799-9995398399998899-945899-------80799884999990
Q 000268 521 PPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFV-LAAIMDCRICVWNAAD-GSLVHS-------LTGHTESTYVLDVH 591 (1757)
Q Consensus 521 ~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~L-vSGs~DG~I~IWDl~t-gkli~t-------L~gH~~~VtsIafS 591 (1757)
.......+.++|+++++.| ++-+..+.|..|++.. +..... ........-.+++.
T Consensus 173 ----------------~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD 236 (319)
T d2dg1a1 173 ----------------IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCID 236 (319)
T ss_dssp ----------------EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEB
T ss_pred ----------------EECCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEECCCCCEEEECCCCCCCEEEEEEC
T ss_conf ----------------6123301000101222127874046891479997699836202463333125776410364173
Q ss_pred CCCCCEEEEEECCCCEEEEECCCCCEEEEEEEC------CCCEEEEEECCCCCEEEEEEC------CCEEEEEEC
Q ss_conf 399949999958992999968999228998606------752579999479999999957------970999998
Q 000268 592 PFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS------RFRLVDGKFSPDGASIILSDD------VGQLYILNT 654 (1757)
Q Consensus 592 Pdd~~lLaSgs~DG~IrIWDi~tg~~i~~l~~~------~~~ItslafSPDG~~LAsgs~------DG~I~IWdl 654 (1757)
+ ++++.++....+.|.+|+. +|+.+..+... ...+++++|.+++..+++... .|.|+..+.
T Consensus 237 ~-~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~ 309 (319)
T d2dg1a1 237 S-DDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG 309 (319)
T ss_dssp T-TCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred C-CCCEEEEECCCCEEEEECC-CCCEEEEEECCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCEEEEEEEC
T ss_conf 8-9999999848998999979-99598899688757786750466778079988999857877699605999929
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=98.55 E-value=2e-05 Score=47.94 Aligned_cols=370 Identities=12% Similarity=0.061 Sum_probs=163.8
Q ss_pred CCCEEEEECCCCEEEEEEC-CCCEEEEEEECCCC----------C-EEEEEECCC----CCEEEEEECCCEEEEEECCCC
Q ss_conf 9999999818726999926-78708899806789----------8-599999579----999999848966999978999
Q 000268 254 SGRYVITGSDDRLVKIWSM-ETAYCLASCRGHEG----------D-ITDLAVSSN----NALVASASNDCIIRVWRLPDG 317 (1757)
Q Consensus 254 DG~~LATGS~DGtIkIWDi-~tg~~l~tL~gHs~----------~-VtsIafSPD----g~lLASgS~DGtIrIWDl~tg 317 (1757)
+|.+.++++..+.|...|. .+|+.+-++..... . -+.+++.++ ..+|+.++.|+.|.-.|..+|
T Consensus 62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG 141 (596)
T d1w6sa_ 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (596)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEECCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCEEEECCCCC
T ss_conf 99999951789968999579988778870387886434321356666516983279988629999807987685436568
Q ss_pred CCEEEECCCC----CCEEEE-EECCCCCCEEEEEEEEC------CCCEEEEECCCCCCCCEEECCCCCCCCC--------
Q ss_conf 7058841778----855999-95279995079999928------9919999467897655252379996324--------
Q 000268 318 LPISVLRGHT----AAVTAI-AFSPRPGSVYQLLSSSD------DGTCRIWDARYSQFSPRIYIPRPSDAVA-------- 378 (1757)
Q Consensus 318 ~~i~~l~gH~----~~VtsI-afSPdg~~~~~LvSgs~------DGtIrIWDl~tg~~~~~i~l~~~~~~~~-------- 378 (1757)
+.+..+.... ..++.- .+. ++ .++.+.. .|.|.-+|+.+++.+.++....+.....
T Consensus 142 ~~~w~~~~~d~~~~~~~t~~P~v~-~~----~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~ 216 (596)
T d1w6sa_ 142 ETVWKVENSDIKVGSTLTIAPYVV-KD----KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIK 216 (596)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-TT----EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT
T ss_pred CEECCCCCCCCCCCCCCCCCCCEE-CC----EEEEEECCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 410231014655564224588177-77----5899302344433573289887888577886535886554555445433
Q ss_pred ----CC------CCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCC----------------EEEEECCCCCCCCCCCCC
Q ss_conf ----88------8888888999996438999877998899950895----------------099963899999899999
Q 000268 379 ----GR------NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDT----------------LARVWNACKPNTDDSDQP 432 (1757)
Q Consensus 379 ----g~------~~~~~~~~~~~~~~V~sIafSpdG~~LasGs~DG----------------~IrIWDi~t~~~~~s~~~ 432 (1757)
+. ..............-..+++.+...++..+..+. .|...|+.++
T Consensus 217 ~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG-------- 288 (596)
T d1w6sa_ 217 NPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTG-------- 288 (596)
T ss_dssp CGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTC--------
T ss_pred CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------
T ss_conf 333454554666678873334787422562215677725405645556520235653334443010263550--------
Q ss_pred CCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCEEEECCCCEEEEEECCCCCCCCCC-
Q ss_conf 8402330377888007998267622333345688788887554----55557870899818990999927888888522-
Q 000268 433 NHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK----NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKA- 507 (1757)
Q Consensus 433 ~~~i~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~~~----~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~- 507 (1757)
+....+......+....... .+.+. ........++....+|.+.++|..+++.....
T Consensus 289 -~~~W~~Q~~~~D~Wd~d~~~-----------------~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~ 350 (596)
T d1w6sa_ 289 -EAKFGYQKTPHDEWDYAGVN-----------------VMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (596)
T ss_dssp -CEEEEEESSTTCSSCCCCCC-----------------CCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred -CCCCCCCCEECCCCCCCCCC-----------------CEEEEECCCCCCCCCCCEECCCCCCCEEEECCCCCCEEEECC
T ss_conf -01001240302565776542-----------------106531033335553210014654322540677882554014
Q ss_pred ----CCCCCCCCCCCCCCCCCC--CCCCCCCCEEECCCC-C--CEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE
Q ss_conf ----221122235699999999--999999931104899-9--7129998579979999953983999988999458998
Q 000268 508 ----ARWTQAYHLKVPPPPMPP--QPPRGGPRQRILPTP-R--GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL 578 (1757)
Q Consensus 508 ----~~w~~~~~l~~~~~~~~~--~~~~~~~~~~l~~h~-~--~VtsIafSPDG~~LvSGs~DG~I~IWDl~tgkli~tL 578 (1757)
..|..........+.... ..........+.... . .-...+++|+..+++....+.... |....... .
T Consensus 351 ~~~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~-~~~~~~~~---~ 426 (596)
T d1w6sa_ 351 LDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMD-WEPFMLPY---K 426 (596)
T ss_dssp SSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEE-EEECCCCC---C
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCC-CCCCCCCC---C
T ss_conf 4665654454211245321274102357765535741544434467655477775597235334321-35434555---4
Q ss_pred ECC--CCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCC
Q ss_conf 079--988499999039994999995899299996899922899860675257999947999999995797099999899
Q 000268 579 TGH--TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 656 (1757)
Q Consensus 579 ~gH--~~~VtsIafSPdd~~lLaSgs~DG~IrIWDi~tg~~i~~l~~~~~~ItslafSPDG~~LAsgs~DG~I~IWdl~s 656 (1757)
.+. .+........|.+... ..-.-|.|.-||+.+|+.+..... ..++..-.++..|.+++.++.||.++.+|..+
T Consensus 427 ~g~~~~g~~~~~~~~~~g~~~--~~~~~G~l~A~D~~TG~~~W~~~~-~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~T 503 (596)
T d1w6sa_ 427 AGQFFVGATLNMYPGPKGDRQ--NYEGLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDT 503 (596)
T ss_dssp TTSCCCCEEEEEEECTTSBTT--TTBCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTT
T ss_pred CCCCCCCCCCCCCCCCCCCCC--CCCCCCEEEEEECCCCCEECCCCC-CCCCCCCEEEECCCEEEEECCCCEEEEEECCC
T ss_conf 565311442320247566745--578855389980788856233278-88874414686699799978999599999999
Q ss_pred CCCCC
Q ss_conf 83113
Q 000268 657 GESQK 661 (1757)
Q Consensus 657 Ge~~~ 661 (1757)
|+.+=
T Consensus 504 Ge~LW 508 (596)
T d1w6sa_ 504 GDLLW 508 (596)
T ss_dssp CCEEE
T ss_pred CCEEE
T ss_conf 84836
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.55 E-value=2e-05 Score=47.91 Aligned_cols=369 Identities=10% Similarity=-0.008 Sum_probs=166.6
Q ss_pred CCCEEEEECCCCEEEEEEC-CCCEEEEEEECCCC-----------CEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEE
Q ss_conf 9999999818726999926-78708899806789-----------85999995799999998489669999789997058
Q 000268 254 SGRYVITGSDDRLVKIWSM-ETAYCLASCRGHEG-----------DITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS 321 (1757)
Q Consensus 254 DG~~LATGS~DGtIkIWDi-~tg~~l~tL~gHs~-----------~VtsIafSPDg~lLASgS~DGtIrIWDl~tg~~i~ 321 (1757)
+|...++.+.++.|.-.|. .+|+.+-++..... .-..+++. +..|+.++.++.+...|.++|+.+.
T Consensus 62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w 139 (571)
T d2ad6a1 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEECCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE--CCEEEEEECCCCEEEEEHHHHHHHC
T ss_conf 99999942879959999489998668883588886544200247688862650--8869999179757821002112202
Q ss_pred EECCCC----CCEEEEEECCCCCCEEEEEEEE------CCCCEEEEECCCCCCCCEEECCCCCCCCCCCC----------
Q ss_conf 841778----8559999527999507999992------89919999467897655252379996324888----------
Q 000268 322 VLRGHT----AAVTAIAFSPRPGSVYQLLSSS------DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRN---------- 381 (1757)
Q Consensus 322 ~l~gH~----~~VtsIafSPdg~~~~~LvSgs------~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~---------- 381 (1757)
...-.. ..++.--...++ .++.+. ..|.|..+|+.+++.+.+..............
T Consensus 140 ~~~~~~~~~~~~~t~~p~v~~~----~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~ 215 (571)
T d2ad6a1 140 EVEVCDPKVGSTLTQAPFVAKD----TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYG 215 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEETT----EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred CCCCCCCCCCCCEEECCEEECC----EEEEEECCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 3444554432414536757588----588850234423467479998889858899704688644455554454433467
Q ss_pred -------CCCCCCCCCCCCCE-EEEEECCCCCEEEEEECCC----------------EEEEECCCCCCCCCCCCCCCCEE
Q ss_conf -------88888899999643-8999877998899950895----------------09996389999989999984023
Q 000268 382 -------MAPSSSAGPQSHQI-FCCAFNANGTVFVTGSSDT----------------LARVWNACKPNTDDSDQPNHEID 437 (1757)
Q Consensus 382 -------~~~~~~~~~~~~~V-~sIafSpdG~~LasGs~DG----------------~IrIWDi~t~~~~~s~~~~~~i~ 437 (1757)
.............+ ...++.+....++.+..+. .+...|+.++ +.+.
T Consensus 216 ~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG---------~~~W 286 (571)
T d2ad6a1 216 QFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTG---------MAKW 286 (571)
T ss_dssp CSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTC---------CEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCH---------HHEE
T ss_conf 5555664567763143797520463305200834564034567522345663355653254412550---------1100
Q ss_pred EECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCEEEECCCCEEEEEECCCCCCCCCC-----CC
Q ss_conf 3037788800799826762233334568878888755455557---870899818990999927888888522-----22
Q 000268 438 VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFC---HDNIVTCSRDGSAIIWIPRSRRSHPKA-----AR 509 (1757)
Q Consensus 438 ~l~gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~---~~~LvSgS~DGtI~IWDl~t~k~~~~~-----~~ 509 (1757)
.+......+........ +.+...... ...++.++.+|.+.++|..+++..... ..
T Consensus 287 ~~q~~~~D~Wd~D~~~~-----------------~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~ 349 (571)
T d2ad6a1 287 GYQKTPHDEWDFAGVNQ-----------------MVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVN 349 (571)
T ss_dssp EEESSTTCSSCCCCCCC-----------------CEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCC
T ss_pred CCCCCCCCCCCCCCCCC-----------------CCEEEEECCCCCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCCC
T ss_conf 12456763314656556-----------------4114551157665404632656449998568983765554677532
Q ss_pred CCCCCCCCCCCCCCC--CCCCCCCCCEEECCC-CCC--EEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCC
Q ss_conf 112223569999999--999999993110489-997--129998579979999953983999988999458998079988
Q 000268 510 WTQAYHLKVPPPPMP--PQPPRGGPRQRILPT-PRG--VNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTES 584 (1757)
Q Consensus 510 w~~~~~l~~~~~~~~--~~~~~~~~~~~l~~h-~~~--VtsIafSPDG~~LvSGs~DG~I~IWDl~tgkli~tL~gH~~~ 584 (1757)
+..........+... ...........+... ... -...+++|+...+++...+....+........ .+....
T Consensus 350 ~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~----~~~~~~ 425 (571)
T d2ad6a1 350 VFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYR----AGQFFV 425 (571)
T ss_dssp SEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCC----TTSCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCC----CCCCCC
T ss_conf 2345564446322376433345667257774022243466520778886289765534433430024566----775321
Q ss_pred EEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCC
Q ss_conf 49999903999499999589929999689992289986067525799994799999999579709999989983113
Q 000268 585 TYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 661 (1757)
Q Consensus 585 VtsIafSPdd~~lLaSgs~DG~IrIWDi~tg~~i~~l~~~~~~ItslafSPDG~~LAsgs~DG~I~IWdl~sGe~~~ 661 (1757)
...+...+ .... ......|.|.-+|+.+|+.+....... +..+-..+..+.++++++.||.++.+|..+|+.+=
T Consensus 426 ~~~~~~~~-~~~~-~~~~~~G~l~AiD~~TG~~~W~~~~~~-~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW 499 (571)
T d2ad6a1 426 GATLAMYP-GPNG-PTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELW 499 (571)
T ss_dssp CEEEEEEE-CTTS-TTSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCCEEECC-CCCC-CCCCCCCCEEEECCCCCCEEEECCCCC-CCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEE
T ss_conf 56303314-6677-666775617885367784642767899-98756059669979997789969999999986878
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.49 E-value=2.8e-05 Score=46.93 Aligned_cols=67 Identities=9% Similarity=0.012 Sum_probs=34.4
Q ss_pred ECCC--CCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEEC-C-----CEEEEEECCCCCC
Q ss_conf 9799--999999818726999926787088998067898599999579999999848-9-----6699997899970
Q 000268 251 FDRS--GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN-D-----CIIRVWRLPDGLP 319 (1757)
Q Consensus 251 FSPD--G~~LATGS~DGtIkIWDi~tg~~l~tL~gHs~~VtsIafSPDg~lLASgS~-D-----GtIrIWDl~tg~~ 319 (1757)
.+|| |+++|..+ ++.|.+.++.++... .|..+.+.+...+|||||+.||.... + ..|.+++..++..
T Consensus 6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~ 80 (281)
T d1k32a2 6 LNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI 80 (281)
T ss_dssp EEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred CCCCCCCCEEEEEE-CCCEEEEECCCCCEE-EEECCCCCCCCEEECCCCCEEEEEEEECCCCCCEEEEEEEECCCCE
T ss_conf 58887999999990-996899989999879-9766998526779878999899998628987722899998259952
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.44 E-value=3.8e-05 Score=46.03 Aligned_cols=101 Identities=8% Similarity=0.127 Sum_probs=62.6
Q ss_pred EECCC--CCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEE-CCC-----CEEEEECCCCC
Q ss_conf 99579--99999984896699997899970588417788559999527999507999992-899-----19999467897
Q 000268 292 AVSSN--NALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS-DDG-----TCRIWDARYSQ 363 (1757)
Q Consensus 292 afSPD--g~lLASgS~DGtIrIWDl~tg~~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs-~DG-----tIrIWDl~tg~ 363 (1757)
..+|+ |+.+|..+ ++.|.+.++.++... .+..+.+.+...+|+|||+ .|+... .++ .|.+++...+.
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~---~iaf~~~~~~~~~~~~i~~~~~~~g~ 79 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGR---KIAIRVMRGSSLNTADLYFYNGENGE 79 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSS---EEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred CCCCCCCCCEEEEEE-CCCEEEEECCCCCEE-EEECCCCCCCCEEECCCCC---EEEEEEEECCCCCCEEEEEEEECCCC
T ss_conf 258887999999990-996899989999879-9766998526779878999---89999862898772289999825995
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEE
Q ss_conf 655252379996324888888888999996438999877998899950
Q 000268 364 FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS 411 (1757)
Q Consensus 364 ~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sIafSpdG~~LasGs 411 (1757)
....... ... ............|+|+|+.|+...
T Consensus 80 ~~~lt~~---~~~-----------~~~~~~~~~~~~~spdg~~l~~~~ 113 (281)
T d1k32a2 80 IKRITYF---SGK-----------STGRRMFTDVAGFDPDGNLIISTD 113 (281)
T ss_dssp EEECCCC---CEE-----------EETTEECSEEEEECTTCCEEEEEC
T ss_pred EEEEEEC---CCC-----------CCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 2886416---887-----------547644434310279887799997
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=98.42 E-value=4.1e-05 Score=45.83 Aligned_cols=371 Identities=10% Similarity=0.068 Sum_probs=168.4
Q ss_pred CCCEEEEECCCCEEEEEECCCCEEEEEEECCC----------CCE-EEEEECCCCCEEEEEECCCEEEEEECCCCCCEEE
Q ss_conf 99999998187269999267870889980678----------985-9999957999999984896699997899970588
Q 000268 254 SGRYVITGSDDRLVKIWSMETAYCLASCRGHE----------GDI-TDLAVSSNNALVASASNDCIIRVWRLPDGLPISV 322 (1757)
Q Consensus 254 DG~~LATGS~DGtIkIWDi~tg~~l~tL~gHs----------~~V-tsIafSPDg~lLASgS~DGtIrIWDl~tg~~i~~ 322 (1757)
+| .|..++.++.|.-+|..+|+.+-++.... ..+ ..+++. ...++.++.++.+...|..+|+.+..
T Consensus 77 ~g-~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~ 153 (573)
T d1kb0a2 77 DG-IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWH 153 (573)
T ss_dssp TT-EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CC-EEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE--CCCEEEEECCCCEEEECCCCCCCEEC
T ss_conf 99-9999789996999958999858786798876533334566566652387--88189973365406661624300101
Q ss_pred ECCCCCCE--EEEEECC---CCCCEEEEEEEEC------CCCEEEEECCCCCCCCEEECCCCCCCCCCC---------CC
Q ss_conf 41778855--9999527---9995079999928------991999946789765525237999632488---------88
Q 000268 323 LRGHTAAV--TAIAFSP---RPGSVYQLLSSSD------DGTCRIWDARYSQFSPRIYIPRPSDAVAGR---------NM 382 (1757)
Q Consensus 323 l~gH~~~V--tsIafSP---dg~~~~~LvSgs~------DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~---------~~ 382 (1757)
........ ..+.-.| .+ .+++++. .|.|..+|..+++.+.++............ ..
T Consensus 154 ~~~~~~~~~~~~~~~~p~v~~~----~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~ 229 (573)
T d1kb0a2 154 QNTFEGQKGSLTITGAPRVFKG----KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW 229 (573)
T ss_dssp EETTTTCCSSCBCCSCCEEETT----EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred CCCCCCCCCEEEEECCEEEEEC----CEEEEECCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 4675687650786010279706----279921344554322189985688651025531045677777754322343235
Q ss_pred CCCC--CCCCCCCCE-EEEEECCCCCEEEEEECCC-------------------EEEEECCCCCCCCCCCCCCCCEEEEC
Q ss_conf 8888--899999643-8999877998899950895-------------------09996389999989999984023303
Q 000268 383 APSS--SAGPQSHQI-FCCAFNANGTVFVTGSSDT-------------------LARVWNACKPNTDDSDQPNHEIDVLS 440 (1757)
Q Consensus 383 ~~~~--~~~~~~~~V-~sIafSpdG~~LasGs~DG-------------------~IrIWDi~t~~~~~s~~~~~~i~~l~ 440 (1757)
.... ........+ ...++.+....++.+.... .|...|+.++ +......
T Consensus 230 ~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG---------~~~W~~q 300 (573)
T d1kb0a2 230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTG---------KYKWHYQ 300 (573)
T ss_dssp CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC---------CEEEEEE
T ss_pred CCCCCEEECCCCCCCCCCCEECHHHCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCH---------HEEECCC
T ss_conf 8877546637987623561185433815511477754441000345666666420799615500---------0120244
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC-CC--CCCCCEEEECCCCEEEEEECCCCCCCCCCCC----CCCC
Q ss_conf 778880079982676223333456887888875545-55--5787089981899099992788888852222----1122
Q 000268 441 GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKN-SW--FCHDNIVTCSRDGSAIIWIPRSRRSHPKAAR----WTQA 513 (1757)
Q Consensus 441 gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~~~~-~~--~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~----w~~~ 513 (1757)
.....+......... .+.. .. .....++.++.+|.+.++|..+++....... |...
T Consensus 301 ~~~~d~wd~d~~~~~-----------------~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~ 363 (573)
T d1kb0a2 301 ETPGDNWDYTSTQPM-----------------ILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG 363 (573)
T ss_dssp SSTTCCSCCCCCSCC-----------------EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred CCCCCCCCCCCCCEE-----------------EECCEECCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 367511200122014-----------------420200179723620212555316886124344223112256643444
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCC--CCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCC--CC-EEEE
Q ss_conf 23569999999999999993110489--9971299985799799999539839999889994589980799--88-4999
Q 000268 514 YHLKVPPPPMPPQPPRGGPRQRILPT--PRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHT--ES-TYVL 588 (1757)
Q Consensus 514 ~~l~~~~~~~~~~~~~~~~~~~l~~h--~~~VtsIafSPDG~~LvSGs~DG~I~IWDl~tgkli~tL~gH~--~~-VtsI 588 (1757)
.......................... ...-..++++|+..+++....+....++.....+......+.. +. ....
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 443 (573)
T d1kb0a2 364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA 443 (573)
T ss_dssp ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred CCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 21122000000023466633786315677666554208876169854111542531155532355778753103553222
Q ss_pred EEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCC
Q ss_conf 9903999499999589929999689992289986067525799994799999999579709999989983113
Q 000268 589 DVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 661 (1757)
Q Consensus 589 afSPdd~~lLaSgs~DG~IrIWDi~tg~~i~~l~~~~~~ItslafSPDG~~LAsgs~DG~I~IWdl~sGe~~~ 661 (1757)
.+ + ...- .....-|.|.-||+.+|+.+..+.... +...-..+-.|.+|++++.||.++.||..+|+.+-
T Consensus 444 ~~-~-~~~p-~~~~~~G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW 512 (573)
T d1kb0a2 444 KF-F-NAEP-PKSKPFGRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLW 512 (573)
T ss_dssp EE-E-CSSC-CCSCCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CC-C-CCCC-CCCCCCCCEEEECCCCCCEEEEECCCC-CCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEE
T ss_conf 33-4-5688-777873617875787786670516889-88776079869989997799919999999886857
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=98.34 E-value=6.2e-05 Score=44.56 Aligned_cols=113 Identities=14% Similarity=0.075 Sum_probs=70.0
Q ss_pred CCCEEEEECCCCEEEEEECCCCEEEEEEECCCC----------C-EEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEE
Q ss_conf 999999981872699992678708899806789----------8-59999957999999984896699997899970588
Q 000268 254 SGRYVITGSDDRLVKIWSMETAYCLASCRGHEG----------D-ITDLAVSSNNALVASASNDCIIRVWRLPDGLPISV 322 (1757)
Q Consensus 254 DG~~LATGS~DGtIkIWDi~tg~~l~tL~gHs~----------~-VtsIafSPDg~lLASgS~DGtIrIWDl~tg~~i~~ 322 (1757)
+| .|..++.++.|.-.|..+|+.+-++..... . -..++. .+..++.+..++.|...|..+|+.+..
T Consensus 66 ~g-~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w~ 142 (560)
T d1kv9a2 66 DG-VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWS 142 (560)
T ss_dssp TT-EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CC-EEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCE--ECCEEEEEECCCEEEEEECCCCCEEEC
T ss_conf 99-999978999599996899987988779877644544322465357504--688499973898799997778957730
Q ss_pred ECCCCC-CEEEEEECC---CCCCEEEEEEEEC------CCCEEEEECCCCCCCCEEECCCC
Q ss_conf 417788-559999527---9995079999928------99199994678976552523799
Q 000268 323 LRGHTA-AVTAIAFSP---RPGSVYQLLSSSD------DGTCRIWDARYSQFSPRIYIPRP 373 (1757)
Q Consensus 323 l~gH~~-~VtsIafSP---dg~~~~~LvSgs~------DGtIrIWDl~tg~~~~~i~l~~~ 373 (1757)
...... ....+.-.| ++ .++.+.. .|.|..+|+.+++.+.++.....
T Consensus 143 ~~~~~~~~~~~~~~~p~v~~~----~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~ 199 (560)
T d1kv9a2 143 QQTTDPAKPYSITGAPRVVKG----KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPG 199 (560)
T ss_dssp EECSCTTSSCBCCSCCEEETT----EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCC
T ss_pred CCCCCCCCCEEEEEEEEEECC----CCCCCCCCEECCCCCEEEEEECCCCEEEEEEEECCC
T ss_conf 576675540454320045068----510365311001355389997788627766410034
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.14 E-value=0.00017 Score=41.62 Aligned_cols=98 Identities=18% Similarity=0.133 Sum_probs=45.2
Q ss_pred EEEEECCCCCEEEE-EECCCEEEEEECCC------CCE--EEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCC
Q ss_conf 29998579979999-95398399998899------945--8998079988499999039994999995899299996899
Q 000268 544 NMIVWSLDNRFVLA-AIMDCRICVWNAAD------GSL--VHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614 (1757)
Q Consensus 544 tsIafSPDG~~LvS-Gs~DG~I~IWDl~t------gkl--i~tL~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDi~t 614 (1757)
+.++|+++++.++. .+..+.|+.|++.. ++. ...+.+..+....+++.. ++.+.++.-..+.|..|+. +
T Consensus 151 Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~-~GnlWva~~~~g~V~~~dp-~ 228 (295)
T d2ghsa1 151 NSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDT-D 228 (295)
T ss_dssp EEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECT-T
T ss_pred CEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCEEECC-CCCEEEEEECCCCEEEECC-C
T ss_conf 4024658776689851566324676453555532453578841675556663267869-9998953207884688569-9
Q ss_pred CCEEEEEEECCCCEEEEEEC-CCCCEEEEE
Q ss_conf 92289986067525799994-799999999
Q 000268 615 GIPIRIYEISRFRLVDGKFS-PDGASIILS 643 (1757)
Q Consensus 615 g~~i~~l~~~~~~ItslafS-PDG~~LAsg 643 (1757)
|+.+..+......+++++|- +|.+.|.+.
T Consensus 229 G~~~~~i~lP~~~~T~~~FGG~d~~~LyvT 258 (295)
T d2ghsa1 229 GNHIARYEVPGKQTTCPAFIGPDASRLLVT 258 (295)
T ss_dssp CCEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred CCEEEEECCCCCCEEEEEEECCCCCEEEEE
T ss_conf 928668638998527989828999999999
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.70 E-value=0.00093 Score=36.53 Aligned_cols=229 Identities=12% Similarity=0.043 Sum_probs=118.3
Q ss_pred EEEEECC-CCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEECC
Q ss_conf 9999979-999999981872699992678708899806789859999957999999984896699997899970588417
Q 000268 247 YCAIFDR-SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRG 325 (1757)
Q Consensus 247 ~sIaFSP-DG~~LATGS~DGtIkIWDi~tg~~l~tL~gHs~~VtsIafSPDg~lLASgS~DGtIrIWDl~tg~~i~~l~g 325 (1757)
-+..|++ ++.+..+--..+.|..||..++... .+. ....+.++++.+++.++++ +.+ .|.++|..+++.......
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~ 96 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAEL 96 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECS
T ss_pred ECCEEECCCCEEEEEECCCCEEEEEECCCCEEE-EEE-CCCCCEEEEEECCCCEEEE-EEC-CCEEEECCCCEEEEEEEE
T ss_conf 587598999999999878999999989989599-998-9998179899659988999-737-638950464513578664
Q ss_pred ----CCCCEEEEEECCCCCCEEEEEEEEC----CCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf ----7885599995279995079999928----99199994678976552523799963248888888889999964389
Q 000268 326 ----HTAAVTAIAFSPRPGSVYQLLSSSD----DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFC 397 (1757)
Q Consensus 326 ----H~~~VtsIafSPdg~~~~~LvSgs~----DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~s 397 (1757)
....++.+.+.|+|. +.++... .+.-.+|.+..++...... .-.....
T Consensus 97 ~~~~~~~~~nd~~vd~~G~---iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~---------------------~~~~~Ng 152 (295)
T d2ghsa1 97 ESDLPGNRSNDGRMHPSGA---LWIGTMGRKAETGAGSIYHVAKGKVTKLFA---------------------DISIPNS 152 (295)
T ss_dssp STTCTTEEEEEEEECTTSC---EEEEEEETTCCTTCEEEEEEETTEEEEEEE---------------------EESSEEE
T ss_pred ECCCCCCCCEEEEECCCCC---EEEEECCCCCCCCCEEEEEECCCCEEEEEE---------------------CCCCCCE
T ss_conf 0478766101357979999---988742643133330576622996899865---------------------0687640
Q ss_pred EEECCCCCEEEE-EECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 998779988999-5089509996389999989999984023303778880079982676223333456887888875545
Q 000268 398 CAFNANGTVFVT-GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKN 476 (1757)
Q Consensus 398 IafSpdG~~Las-Gs~DG~IrIWDi~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~~~~ 476 (1757)
++|++++..++. .+..+.|..|++
T Consensus 153 ~~~s~d~~~l~~~dt~~~~I~~~~~------------------------------------------------------- 177 (295)
T d2ghsa1 153 ICFSPDGTTGYFVDTKVNRLMRVPL------------------------------------------------------- 177 (295)
T ss_dssp EEECTTSCEEEEEETTTCEEEEEEB-------------------------------------------------------
T ss_pred EEECCCCCEEEEEECCCCEEEEEEE-------------------------------------------------------
T ss_conf 2465877668985156632467645-------------------------------------------------------
Q ss_pred CCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--EEECCCCCCEEEEEECCCCCE
Q ss_conf 555787089981899099992788888852222112223569999999999999993--110489997129998579979
Q 000268 477 SWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPR--QRILPTPRGVNMIVWSLDNRF 554 (1757)
Q Consensus 477 ~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~--~~l~~h~~~VtsIafSPDG~~ 554 (1757)
........ .... ............+++..+|.+
T Consensus 178 ----------------------d~~~~~~~-----------------------~~~~~~~~~~~~~g~pdG~~vD~~Gnl 212 (295)
T d2ghsa1 178 ----------------------DARTGLPT-----------------------GKAEVFIDSTGIKGGMDGSVCDAEGHI 212 (295)
T ss_dssp ----------------------CTTTCCBS-----------------------SCCEEEEECTTSSSEEEEEEECTTSCE
T ss_pred ----------------------CCCCCCCC-----------------------CCEEEEECCCCCCCCCCCEEECCCCCE
T ss_conf ----------------------35555324-----------------------535788416755566632678699998
Q ss_pred EEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEE-CCCCCEEEEEECC
Q ss_conf 9999539839999889994589980799884999990-3999499999589
Q 000268 555 VLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVH-PFNPRIAMSAGYD 604 (1757)
Q Consensus 555 LvSGs~DG~I~IWDl~tgkli~tL~gH~~~VtsIafS-Pdd~~lLaSgs~D 604 (1757)
.++....+.|..|+. .|+++..+.-....+++++|- ++...+++|....
T Consensus 213 Wva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~~ 262 (295)
T d2ghsa1 213 WNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE 262 (295)
T ss_dssp EEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred EEEEECCCCEEEECC-CCCEEEEECCCCCCEEEEEEECCCCCEEEEEECCC
T ss_conf 953207884688569-99286686389985279898289999999997874
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.69 E-value=0.00095 Score=36.47 Aligned_cols=363 Identities=12% Similarity=0.055 Sum_probs=155.8
Q ss_pred CEEEEECCCCEEEEEECCCCEEEEEEECCC--------CCE-EEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEECC-
Q ss_conf 999998187269999267870889980678--------985-9999957999999984896699997899970588417-
Q 000268 256 RYVITGSDDRLVKIWSMETAYCLASCRGHE--------GDI-TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRG- 325 (1757)
Q Consensus 256 ~~LATGS~DGtIkIWDi~tg~~l~tL~gHs--------~~V-tsIafSPDg~lLASgS~DGtIrIWDl~tg~~i~~l~g- 325 (1757)
..|.+++.++.|.-.|..+|+.+-++.... ..+ ..+++. +..|+.++.++.+...|..+|+.+.....
T Consensus 69 g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~t~~~~l~alda~tG~~~W~~~~~ 146 (582)
T d1flga_ 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY--GDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE--TTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEE--CCCEEEECCCCEEEEECCCCCCEEEEECCC
T ss_conf 999996899959999689998688876889876553334446774586--781588648874998116666302111024
Q ss_pred -CCC----CEEEEEECC--CCCCEEEEEEE-------ECCCCEEEEECCCCCCCCEEECCCCCCCC--------CCCCCC
Q ss_conf -788----559999527--99950799999-------28991999946789765525237999632--------488888
Q 000268 326 -HTA----AVTAIAFSP--RPGSVYQLLSS-------SDDGTCRIWDARYSQFSPRIYIPRPSDAV--------AGRNMA 383 (1757)
Q Consensus 326 -H~~----~VtsIafSP--dg~~~~~LvSg-------s~DGtIrIWDl~tg~~~~~i~l~~~~~~~--------~g~~~~ 383 (1757)
+.. .-.-+.+.+ ... .++.. +..+.|.-+|..+++.+.++......... .+....
T Consensus 147 ~~~~~~~~~~~p~~~~~~~~~~---~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~ 223 (582)
T d1flga_ 147 DHGAGYTMTGAPTIVKDGKTGK---VLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKA 223 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCC---EEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTC
T ss_pred CCCCCCEEECCCEEECCCCEEE---EEEEECCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 7776612403866704884757---9999076654346546348723888867898712178656224666533343234
Q ss_pred ---C---------CCCCCCCCCCE-EEEEECCCCCEEEEEECCC------------------------EEEEECCCCCCC
Q ss_conf ---8---------88899999643-8999877998899950895------------------------099963899999
Q 000268 384 ---P---------SSSAGPQSHQI-FCCAFNANGTVFVTGSSDT------------------------LARVWNACKPNT 426 (1757)
Q Consensus 384 ---~---------~~~~~~~~~~V-~sIafSpdG~~LasGs~DG------------------------~IrIWDi~t~~~ 426 (1757)
+ ..........+ ..+++.+...+++.+..+. .+...|+.++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG-- 301 (582)
T d1flga_ 224 PSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSG-- 301 (582)
T ss_dssp TTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTC--
T ss_pred CCCCCCCCCCCCCCCCEECCCCCCCCCCEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCH--
T ss_conf 457775455557764020589862254200356645896457865333443456787767643222120587335531--
Q ss_pred CCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC-CCCC---CCCEEEECCCCEEEEEECCCCC
Q ss_conf 89999984023303778880079982676223333456887888875545-5557---8708998189909999278888
Q 000268 427 DDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKN-SWFC---HDNIVTCSRDGSAIIWIPRSRR 502 (1757)
Q Consensus 427 ~~s~~~~~~i~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~~~~-~~~~---~~~LvSgS~DGtI~IWDl~t~k 502 (1757)
+....+......+....... .+.+.. .... ...++..+.++.+.++|..+++
T Consensus 302 -------~~~W~~q~~~~D~wd~d~~~-----------------~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG~ 357 (582)
T d1flga_ 302 -------EVKWFYQHTPNDAWDFSGNN-----------------ELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGK 357 (582)
T ss_dssp -------CEEEEEESSTTCCSCCCCCC-----------------CCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred -------HHHHCCCCCCCCCCCCCCCC-----------------CCCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCC
T ss_conf -------33211332235531232234-----------------433234332344554235750464407862466873
Q ss_pred CCCCC-----CCCCCCCCCCCC-----C---CCCCCCCCCCCCCEEECCC---CCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 88522-----221122235699-----9---9999999999993110489---997129998579979999953983999
Q 000268 503 SHPKA-----ARWTQAYHLKVP-----P---PPMPPQPPRGGPRQRILPT---PRGVNMIVWSLDNRFVLAAIMDCRICV 566 (1757)
Q Consensus 503 ~~~~~-----~~w~~~~~l~~~-----~---~~~~~~~~~~~~~~~l~~h---~~~VtsIafSPDG~~LvSGs~DG~I~I 566 (1757)
..... ..|......... . ...............+... ...-...+++|+...++....+....+
T Consensus 358 ~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~~~~~ 437 (582)
T d1flga_ 358 LQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDY 437 (582)
T ss_dssp EEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEECCCCCCEEEECCCCCCCC
T ss_conf 02223566755432335666565201156444533566445542897787557741144145587770531023455322
Q ss_pred EECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECC
Q ss_conf 98899945899807998849999903999499999589929999689992289986067525799994799999999579
Q 000268 567 WNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDV 646 (1757)
Q Consensus 567 WDl~tgkli~tL~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDi~tg~~i~~l~~~~~~ItslafSPDG~~LAsgs~D 646 (1757)
|....... .+..........-+ +.....|.|.-+|+.+|+.+..+..+ .++..-..+..|.++++++.|
T Consensus 438 ~~~~~~~~----~g~~~~~~~~~~~~------~~~~~~G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~d 506 (582)
T d1flga_ 438 WTEEVSYT----KGSAYLGMGFRIKR------MYDDHVGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGD 506 (582)
T ss_dssp EECCCCCC----TTSCCCCEEEEEEE------SCSSCSEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTT
T ss_pred CCCCCCCC----CCCCCCCCCCCCCC------CCCCCCCEEEEECCCCCCEEEECCCC-CCCCCCEEEECCCEEEEECCC
T ss_conf 22335543----36654266754453------66688775999807899587326779-997450169769869996799
Q ss_pred CEEEEEECCCCCCC
Q ss_conf 70999998998311
Q 000268 647 GQLYILNTGQGESQ 660 (1757)
Q Consensus 647 G~I~IWdl~sGe~~ 660 (1757)
|.++.+|..+|+.+
T Consensus 507 g~l~A~Da~TGe~L 520 (582)
T d1flga_ 507 GYFKAFDAKSGKEL 520 (582)
T ss_dssp SEEEEEETTTCCEE
T ss_pred CEEEEEECCCCCEE
T ss_conf 96999999998686
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.31 E-value=0.0029 Score=33.12 Aligned_cols=127 Identities=17% Similarity=0.142 Sum_probs=59.2
Q ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCC------------CEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 999990399949999958992999968999------------22899860675257999947999999995797099999
Q 000268 586 YVLDVHPFNPRIAMSAGYDGKTIVWDIWEG------------IPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 653 (1757)
Q Consensus 586 tsIafSPdd~~lLaSgs~DG~IrIWDi~tg------------~~i~~l~~~~~~ItslafSPDG~~LAsgs~DG~I~IWd 653 (1757)
..+.++|++..+++++..+.++.|.|+..- ....... ........+|+..|.-..+.--|.+|.-|+
T Consensus 278 HGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e-lglgPLht~fd~~g~aytslfids~v~kw~ 356 (459)
T d1fwxa2 278 HGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWN 356 (459)
T ss_dssp CCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred CCEEECCCCCEEEEECCCCCCEEEEEEHHHHHHHCCCCCCCCCEEEECC-CCCCCCCCCCCCCCEEEEEEECCCEEEEEE
T ss_conf 7338899997899938858957999822535665046884521796113-576766203389842999861231699973
Q ss_pred CCCCCCCCCCCCCEEECCCCC-CEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECC
Q ss_conf 899831135432112217985-0788147863312321146768878756578988899952001010016633169878
Q 000268 654 TGQGESQKDAKYDQFFLGDYR-PLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRP 732 (1757)
Q Consensus 654 l~sGe~~~~~~~~~~fs~D~r-~Li~d~~g~vlD~~tql~p~l~~l~~~L~D~~~~p~p~~~q~l~~~r~~g~~~iafSP 732 (1757)
+...... +..+.. +++ +. ++ -.|| ++|.....+-...|
T Consensus 357 ~~~~~~~--------~~~~~~~~v~-~k----~~-------------------------v~y~---~gh~~~~~g~t~~~ 395 (459)
T d1fwxa2 357 IEDAIRA--------YAGEKVDPIK-DK----LD-------------------------VHYQ---PGHLKTVMGETLDA 395 (459)
T ss_dssp HHHHHHH--------HHTCSCCCEE-EE----EE-------------------------CSSC---EEEEEETTTTSTTC
T ss_pred CCHHHHH--------HCCCCCCCCE-EC----CC-------------------------CCCC---CCCCCCCCCCCCCC
T ss_conf 4405566--------4466677311-35----43-------------------------3457---88774576786788
Q ss_pred CCCEEEEEECCCCCCCEEEECC
Q ss_conf 9984999618998873684106
Q 000268 733 SSLKLAVGPDFSLDQGYQLQPL 754 (1757)
Q Consensus 733 DG~~LAvg~d~s~~~~v~l~~l 754 (1757)
||+||.+..-++-++...+.++
T Consensus 396 dgk~l~~~nk~skdrfl~vgpl 417 (459)
T d1fwxa2 396 TNDWLVCLSKFSKDRFLNVGPL 417 (459)
T ss_dssp CSSEEEEEESCCTTSSCCCCSS
T ss_pred CCCEEEEECCCCCCCCCCCCCC
T ss_conf 8878998034343446678889
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.16 E-value=0.0041 Score=32.10 Aligned_cols=71 Identities=20% Similarity=0.241 Sum_probs=31.1
Q ss_pred EEEEECCCCCEEEEECCCC-----------EEEEEECCCCEEEE--EE-ECCCCCEEEEEECCCCCEEEEEECC-CEEEE
Q ss_conf 9999979999999981872-----------69999267870889--98-0678985999995799999998489-66999
Q 000268 247 YCAIFDRSGRYVITGSDDR-----------LVKIWSMETAYCLA--SC-RGHEGDITDLAVSSNNALVASASND-CIIRV 311 (1757)
Q Consensus 247 ~sIaFSPDG~~LATGS~DG-----------tIkIWDi~tg~~l~--tL-~gHs~~VtsIafSPDg~lLASgS~D-GtIrI 311 (1757)
...+...+|+.++.|+.+. .+.+||..++.... .. ..+.......++.+++.+++.|+.+ ..+.+
T Consensus 23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~ 102 (387)
T d1k3ia3 23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 102 (387)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred EEEEEEECCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCEEE
T ss_conf 78999259999999840576667887760689999888896866677898744525689994688689863688862167
Q ss_pred EECCCC
Q ss_conf 978999
Q 000268 312 WRLPDG 317 (1757)
Q Consensus 312 WDl~tg 317 (1757)
||..+.
T Consensus 103 yd~~~~ 108 (387)
T d1k3ia3 103 YDSSSD 108 (387)
T ss_dssp EEGGGT
T ss_pred ECCCCC
T ss_conf 567557
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.15 E-value=0.0042 Score=32.03 Aligned_cols=83 Identities=12% Similarity=-0.001 Sum_probs=54.9
Q ss_pred CCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCE-EEEEECCCCC-
Q ss_conf 98399998899945899807998849999903999499999589929999689992289986067525-7999947999-
Q 000268 561 DCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRL-VDGKFSPDGA- 638 (1757)
Q Consensus 561 DG~I~IWDl~tgkli~tL~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDi~tg~~i~~l~~~~~~I-tslafSPDG~- 638 (1757)
.|.|.-+|+.+|+.+.+........... .+- .+.+++.++.|+.++.+|..+|+.+..+....... .-+.|..||+
T Consensus 443 ~G~l~AiD~~TG~~~W~~~~~~~~~~g~-l~T-agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkq 520 (571)
T d2ad6a1 443 MGQIRAFDLTTGKAKWTKWEKFAAWGGT-LYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ 520 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESSCCCSBC-EEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CCCEEEECCCCCCEEEECCCCCCCCCCE-EEE-CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEECCEEEEECCEE
T ss_conf 5617885367784642767899987560-596-69979997789969999999986878998999965156489889999
Q ss_pred EEEEEEC
Q ss_conf 9999957
Q 000268 639 SIILSDD 645 (1757)
Q Consensus 639 ~LAsgs~ 645 (1757)
||++...
T Consensus 521 Yi~v~~g 527 (571)
T d2ad6a1 521 YIGSMYG 527 (571)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
T ss_conf 9999906
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.14 E-value=0.0043 Score=31.98 Aligned_cols=116 Identities=14% Similarity=0.212 Sum_probs=60.6
Q ss_pred CCEEEEEECCCCCEEEEEECC-----------CEEEEEECCCCCCE--EEE-CCCCCCEEEEEECCCCCCEEEEEEEECC
Q ss_conf 985999995799999998489-----------66999978999705--884-1778855999952799950799999289
Q 000268 286 GDITDLAVSSNNALVASASND-----------CIIRVWRLPDGLPI--SVL-RGHTAAVTAIAFSPRPGSVYQLLSSSDD 351 (1757)
Q Consensus 286 ~~VtsIafSPDg~lLASgS~D-----------GtIrIWDl~tg~~i--~~l-~gH~~~VtsIafSPdg~~~~~LvSgs~D 351 (1757)
..+...+...++++++.|+.+ ..+.+||+.+++-. ... ..+.......++.+++. .++.++.+
T Consensus 20 ~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~---i~v~Gg~~ 96 (387)
T d1k3ia3 20 VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ---IVVTGGND 96 (387)
T ss_dssp CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC---EEEECSSS
T ss_pred CCCEEEEEEECCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCCCCCCEEEEEEECCCC---EEEEECCC
T ss_conf 101789992599999998405766678877606899998888968666778987445256899946886---89863688
Q ss_pred -CCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECC------CEEEEECCCC
Q ss_conf -91999946789765525237999632488888888899999643899987799889995089------5099963899
Q 000268 352 -GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD------TLARVWNACK 423 (1757)
Q Consensus 352 -GtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sIafSpdG~~LasGs~D------G~IrIWDi~t 423 (1757)
..+.+||..+......-.. .......+++..++|++++.|+.. ..+.+||..+
T Consensus 97 ~~~~~~yd~~~~~w~~~~~~-------------------~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~ 156 (387)
T d1k3ia3 97 AKKTSLYDSSSDSWIPGPDM-------------------QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 156 (387)
T ss_dssp TTCEEEEEGGGTEEEECCCC-------------------SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred CCCEEEECCCCCCCCCCCCC-------------------CCCCCCCCEEEECCCCEEEECCCCCCCCCCCEEEEECCCC
T ss_conf 86216756755744215656-------------------6421013035531782665213663335432056634888
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.04 E-value=0.0053 Score=31.36 Aligned_cols=69 Identities=14% Similarity=0.085 Sum_probs=43.4
Q ss_pred CCEEEEECCCCEEEEEECCCCEEEEEEECCCC----CEEEEEECCCCCEEEEEEC------CCEEEEEECCCCCCEEEEC
Q ss_conf 99999981872699992678708899806789----8599999579999999848------9669999789997058841
Q 000268 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHEG----DITDLAVSSNNALVASASN------DCIIRVWRLPDGLPISVLR 324 (1757)
Q Consensus 255 G~~LATGS~DGtIkIWDi~tg~~l~tL~gHs~----~VtsIafSPDg~lLASgS~------DGtIrIWDl~tg~~i~~l~ 324 (1757)
+..++.+..++.|.-.|..+|+++........ .++..-...++ .++.+.. .|.|..+|..+|+.+..+.
T Consensus 117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 195 (560)
T d1kv9a2 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (560)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEECCCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEEEECC-CCCCCCCCEECCCCCEEEEEECCCCEEEEEEE
T ss_conf 88499973898799997778957730576675540454320045068-51036531100135538999778862776641
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=96.68 E-value=0.01 Score=29.42 Aligned_cols=82 Identities=10% Similarity=0.125 Sum_probs=55.1
Q ss_pred CEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCE-EEEEECCCCC-E
Q ss_conf 8399998899945899807998849999903999499999589929999689992289986067525-7999947999-9
Q 000268 562 CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRL-VDGKFSPDGA-S 639 (1757)
Q Consensus 562 G~I~IWDl~tgkli~tL~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDi~tg~~i~~l~~~~~~I-tslafSPDG~-~ 639 (1757)
|.|.-||+.+|+.+........ ...-..+- .+.+++.|+.||.++.+|..+|+.+..+....... .-+.|..||+ |
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~p-~~gg~lst-agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQY 534 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVSP-WNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY 534 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CCEEEECCCCCCEEEEECCCCC-CCCCEEEE-CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEE
T ss_conf 6178757877866705168898-87760798-699899977999199999998868579989899451677999899999
Q ss_pred EEEEEC
Q ss_conf 999957
Q 000268 640 IILSDD 645 (1757)
Q Consensus 640 LAsgs~ 645 (1757)
|++...
T Consensus 535 v~v~~G 540 (573)
T d1kb0a2 535 VSVAVG 540 (573)
T ss_dssp EEEEEC
T ss_pred EEEEEC
T ss_conf 999937
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.41 E-value=0.015 Score=28.29 Aligned_cols=271 Identities=12% Similarity=0.086 Sum_probs=152.9
Q ss_pred CCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCE
Q ss_conf 87269999267870889980678985999995799999998489669999789997058841778855999952799950
Q 000268 263 DDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSV 342 (1757)
Q Consensus 263 ~DGtIkIWDi~tg~~l~tL~gHs~~VtsIafSPDg~lLASgS~DGtIrIWDl~tg~~i~~l~gH~~~VtsIafSPdg~~~ 342 (1757)
....|.|.|+........-.- .-.+.-.+|..+.||.-+ ..++.++|+++.+.+..+. ....|.--.|..+.
T Consensus 43 ~~~~VvIidl~n~~~~~Rrpi---~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~-~~e~VvfWkWis~~--- 114 (327)
T d1utca2 43 EQAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT-MTDDVTFWKWISLN--- 114 (327)
T ss_dssp TEEEEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE-CSSCCCEEEESSSS---
T ss_pred CCCEEEEEECCCCCCCEECCC---CHHHHHCCCCCCEEEEEC-CCEEEEEEHHHHHHHCEEE-CCCCCEEEEECCCC---
T ss_conf 984399998899876331443---616653088875799962-8868998446822111587-68885799944798---
Q ss_pred EEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEE-------CCCE
Q ss_conf 799999289919999467897655252379996324888888888999996438999877998899950-------8950
Q 000268 343 YQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS-------SDTL 415 (1757)
Q Consensus 343 ~~LvSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sIafSpdG~~LasGs-------~DG~ 415 (1757)
.|+..+. ..|.-|+++.... +.....+... -...+|.....+++.++++..+ -.|.
T Consensus 115 -~L~lVT~-taVYHW~~~g~s~-P~k~fdR~~~--------------L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~ 177 (327)
T d1utca2 115 -TVALVTD-NAVYHWSMEGESQ-PVKMFDRHSS--------------LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA 177 (327)
T ss_dssp -EEEEECS-SEEEEEESSSSCC-CEEEEECCGG--------------GTTCEEEEEEECTTSCEEEEEEEEEETTEEEEE
T ss_pred -EEEEECC-CCEEEECCCCCCC-CHHHHHHCCC--------------CCCCEEEEEEECCCCCEEEEEEEECCCCCEEEE
T ss_conf -8999918-8169973569998-5266232101--------------248638998989999889999571378830588
Q ss_pred EEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE---ECCCCE
Q ss_conf 99963899999899999840233037788800799826762233334568878888755455557870899---818990
Q 000268 416 ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVT---CSRDGS 492 (1757)
Q Consensus 416 IrIWDi~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvS---gS~DGt 492 (1757)
+.+|.... +..+.+.||...-..+.+..+... ...++. +...+.
T Consensus 178 mQLYS~er----------~~sQ~ieGhaa~F~~~~~~g~~~~-----------------------~~lf~fa~r~~~~~k 224 (327)
T d1utca2 178 MQLYSVDR----------KVSQPIEGHAASFAQFKMEGNAEE-----------------------STLFCFAVRGQAGGK 224 (327)
T ss_dssp EEEEETTT----------TEEEEECCSEEEEEEECCTTCSSC-----------------------EEEEEEEEEETTEEE
T ss_pred EEEEEECC----------CCCCCCCCEEEEEEEEECCCCCCC-----------------------CEEEEEEECCCCCCE
T ss_conf 88998022----------867523203465688870799887-----------------------309999987898747
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC
Q ss_conf 99992788888852222112223569999999999999993110489997129998579979999953983999988999
Q 000268 493 AIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG 572 (1757)
Q Consensus 493 I~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LvSGs~DG~I~IWDl~tg 572 (1757)
+.|.++....... .........+-.++ ....+-..++..|+....+..-+.-|.|++||+.++
T Consensus 225 LhIiEig~~~~g~-~~f~kk~vdi~fpp----------------ea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTg 287 (327)
T d1utca2 225 LHIIEVGTPPTGN-QPFPKKAVDVFFPP----------------EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG 287 (327)
T ss_dssp EEEEECSCCCTTC-CCCCCEEEECCCCT----------------TCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC
T ss_pred EEEEECCCCCCCC-CCCCCEEEEEECCC----------------CCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCC
T ss_conf 9999868875578-88753268877796----------------346884779996433799999966758999975666
Q ss_pred CEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEE
Q ss_conf 4589980799884999990399949999958992999
Q 000268 573 SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIV 609 (1757)
Q Consensus 573 kli~tL~gH~~~VtsIafSPdd~~lLaSgs~DG~IrI 609 (1757)
.++..-+-..+.|...+-....+-+ ++...+|.|.-
T Consensus 288 t~i~~nRIs~~~iF~~a~~~~~~Gi-~~VNr~GqVl~ 323 (327)
T d1utca2 288 TCIYMNRISGETIFVTAPHEATAGI-IGVNRKGQVLS 323 (327)
T ss_dssp CEEEEEECCSSCEEEEEEETTTTEE-EEEETTSEEEE
T ss_pred CEEEEEECCCCCEEEECCCCCCCEE-EEECCCCEEEE
T ss_conf 2899940478844896267888608-99878976999
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=96.32 E-value=0.016 Score=27.97 Aligned_cols=82 Identities=12% Similarity=0.092 Sum_probs=55.3
Q ss_pred CEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCE-EEEEECCCCC-E
Q ss_conf 8399998899945899807998849999903999499999589929999689992289986067525-7999947999-9
Q 000268 562 CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRL-VDGKFSPDGA-S 639 (1757)
Q Consensus 562 G~I~IWDl~tgkli~tL~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDi~tg~~i~~l~~~~~~I-tslafSPDG~-~ 639 (1757)
|.|.-||+.+|+.+...... ..+..-..+. .+.+++.|+.||.++.+|..+|+.+..+....... .-+.|..||+ |
T Consensus 453 G~l~A~D~~TG~~~W~~~~~-~~~~gg~lsT-agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQY 530 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKMER-FAVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQY 530 (596)
T ss_dssp EEEEEECTTTCCEEEEEEES-SCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CEEEEEECCCCCEECCCCCC-CCCCCCEEEE-CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEE
T ss_conf 53899807888562332788-8874414686-699799978999599999999848369989999540776899899999
Q ss_pred EEEEEC
Q ss_conf 999957
Q 000268 640 IILSDD 645 (1757)
Q Consensus 640 LAsgs~ 645 (1757)
|++...
T Consensus 531 vav~~G 536 (596)
T d1w6sa_ 531 VAIYYG 536 (596)
T ss_dssp EEEEEC
T ss_pred EEEEEC
T ss_conf 999936
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.57 E-value=0.066 Score=23.86 Aligned_cols=62 Identities=18% Similarity=0.141 Sum_probs=37.0
Q ss_pred CCCCEEEEEECCCCCEEEEE-----CCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE
Q ss_conf 79878999997999999998-----1872699992678708899806789859999957999999984
Q 000268 242 HRNAVYCAIFDRSGRYVITG-----SDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS 304 (1757)
Q Consensus 242 H~~~V~sIaFSPDG~~LATG-----S~DGtIkIWDi~tg~~l~tL~gHs~~VtsIafSPDg~lLASgS 304 (1757)
+.-.+..+++||+++++|.+ ++...|++.|+.+++.+...- .......++|.+|++.|+-..
T Consensus 123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~ 189 (430)
T d1qfma1 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNA 189 (430)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEE
T ss_pred CCCEECCEEECCCCCEEEEEECCCCCCHHEEEEECCCCCEECCCCC-CCCCCCCEEECCCCCEEEEEE
T ss_conf 4413342585378987999955666721046774167640314422-243236417857998999997
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.81 E-value=0.092 Score=22.84 Aligned_cols=82 Identities=11% Similarity=0.103 Sum_probs=55.2
Q ss_pred CCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCE-EEEEECCCCC-
Q ss_conf 98399998899945899807998849999903999499999589929999689992289986067525-7999947999-
Q 000268 561 DCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRL-VDGKFSPDGA- 638 (1757)
Q Consensus 561 DG~I~IWDl~tgkli~tL~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDi~tg~~i~~l~~~~~~I-tslafSPDG~- 638 (1757)
.|.|.-+|+.+|+.+.....+.. +..-..+. .+.+++.|+.||.++.+|..+|+.+..+....... .-+.|..||+
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~~p-~~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q 542 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEHLP-LWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSC-CCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CCEEEEECCCCCCEEEECCCCCC-CCCCEEEE-CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEE
T ss_conf 77599980789958732677999-74501697-69869996799969999999986867988999962167799989999
Q ss_pred EEEEEE
Q ss_conf 999995
Q 000268 639 SIILSD 644 (1757)
Q Consensus 639 ~LAsgs 644 (1757)
||++..
T Consensus 543 Yv~i~a 548 (582)
T d1flga_ 543 YLGVTV 548 (582)
T ss_dssp EEEEEE
T ss_pred EEEEEE
T ss_conf 999993
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=93.10 E-value=0.12 Score=22.08 Aligned_cols=106 Identities=8% Similarity=0.023 Sum_probs=63.1
Q ss_pred CCCCCCEEEEEECCCCCEEEEEE-CCCEEEEEECCCCC------------EEEEEECCCCCEEEEEEECCCCCEEEEEEC
Q ss_conf 48999712999857997999995-39839999889994------------589980799884999990399949999958
Q 000268 537 LPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAADGS------------LVHSLTGHTESTYVLDVHPFNPRIAMSAGY 603 (1757)
Q Consensus 537 ~~h~~~VtsIafSPDG~~LvSGs-~DG~I~IWDl~tgk------------li~tL~gH~~~VtsIafSPdd~~lLaSgs~ 603 (1757)
.+.......+.++|||+++++++ .+.++.|+|+.... ...... ..-.-...+|.. .+....|.--
T Consensus 271 IPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e-lglgPLht~fd~-~g~aytslfi 348 (459)
T d1fwxa2 271 IPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFL 348 (459)
T ss_dssp EEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB-CCSCEEEEEECT-TSEEEEEETT
T ss_pred EECCCCCCCEEECCCCCEEEEECCCCCCEEEEEEHHHHHHHCCCCCCCCCEEEECC-CCCCCCCCCCCC-CCEEEEEEEC
T ss_conf 86589877338899997899938858957999822535665046884521796113-576766203389-8429998612
Q ss_pred CCCEEEEECCCC----------CEEEEEEECCCCEEEE------EECCCCCEEEEEEC
Q ss_conf 992999968999----------2289986067525799------99479999999957
Q 000268 604 DGKTIVWDIWEG----------IPIRIYEISRFRLVDG------KFSPDGASIILSDD 645 (1757)
Q Consensus 604 DG~IrIWDi~tg----------~~i~~l~~~~~~Itsl------afSPDG~~LAsgs~ 645 (1757)
|..|.-|++... ..+..+..|-. +-.+ ...|||++|++...
T Consensus 349 ds~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~-~gh~~~~~g~t~~~dgk~l~~~nk 405 (459)
T d1fwxa2 349 DSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ-PGHLKTVMGETLDATNDWLVCLSK 405 (459)
T ss_dssp TTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC-EEEEEETTTTSTTCCSSEEEEEES
T ss_pred CCEEEEEECCHHHHHHCCCCCCCCEECCCCCCC-CCCCCCCCCCCCCCCCCEEEEECC
T ss_conf 316999734405566446667731135433457-887745767867888878998034
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.71 E-value=0.13 Score=21.71 Aligned_cols=107 Identities=7% Similarity=0.038 Sum_probs=58.9
Q ss_pred CCCCEEEEEECCCCCEEEEEE-----CCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECC-------
Q ss_conf 789859999957999999984-----89669999789997058841778855999952799950799999289-------
Q 000268 284 HEGDITDLAVSSNNALVASAS-----NDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD------- 351 (1757)
Q Consensus 284 Hs~~VtsIafSPDg~lLASgS-----~DGtIrIWDl~tg~~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~D------- 351 (1757)
+.-.+..++++|+++++|.+- ....|++.|+.+++.+...-. ......++|.+++. .|+-...+
T Consensus 123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~---~~~Y~~~~~~~~~~~ 198 (430)
T d1qfma1 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGK---GMFYNAYPQQDGKSD 198 (430)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSS---EEEEEECCCCSSCCS
T ss_pred CCCEECCEEECCCCCEEEEEECCCCCCHHEEEEECCCCCEECCCCCC-CCCCCCEEECCCCC---EEEEEEECCCCCCCC
T ss_conf 44133425853789879999556667210467741676403144222-43236417857998---999997626667654
Q ss_pred ---------CCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEE
Q ss_conf ---------91999946789765525237999632488888888899999643899987799889995
Q 000268 352 ---------GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG 410 (1757)
Q Consensus 352 ---------GtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sIafSpdG~~LasG 410 (1757)
..|..|.+.+......+..... .....+..+..+.++++++..
T Consensus 199 ~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~----------------d~~~~~~~~~~s~d~~~l~i~ 250 (430)
T d1qfma1 199 GTETSTNLHQKLYYHVLGTDQSEDILCAEFP----------------DEPKWMGGAELSDDGRYVLLS 250 (430)
T ss_dssp SSCCCCCCCCEEEEEETTSCGGGCEEEECCT----------------TCTTCEEEEEECTTSCEEEEE
T ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCCCCCC----------------CCCCEEEEEECCCCCCEEEEE
T ss_conf 4333457863389998898865310022323----------------577257753026876245687
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.55 E-value=0.14 Score=21.57 Aligned_cols=75 Identities=11% Similarity=0.038 Sum_probs=27.0
Q ss_pred EEEEECCCCCEEEEE-ECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEE
Q ss_conf 299985799799999-539839999889994589980799884999990399949999958992999968999228998
Q 000268 544 NMIVWSLDNRFVLAA-IMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIY 621 (1757)
Q Consensus 544 tsIafSPDG~~LvSG-s~DG~I~IWDl~tgkli~tL~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDi~tg~~i~~l 621 (1757)
..+++++.++.|..+ ...+.|...++........+.+.. ...+|++. ++.+.++-...+.|...+..+++.+..+
T Consensus 170 ~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~-~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~ 245 (263)
T d1npea_ 170 NGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTF 245 (263)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC-SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCEEEEEECCCCEEEEEECCCCCEEEEECCCC-CCEEEEEE--CCEEEEEECCCCEEEEEECCCCCCCEEE
T ss_conf 3079950475899992899999999999997699988999-86899999--9999999999997999989899510698
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.92 E-value=0.17 Score=21.08 Aligned_cols=114 Identities=11% Similarity=-0.004 Sum_probs=48.0
Q ss_pred EEEEEECCCCCEEEEEE--CCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEE
Q ss_conf 12999857997999995--3983999988999458998079988499999039994999995899299996899922899
Q 000268 543 VNMIVWSLDNRFVLAAI--MDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRI 620 (1757)
Q Consensus 543 VtsIafSPDG~~LvSGs--~DG~I~IWDl~tgkli~tL~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDi~tg~~i~~ 620 (1757)
...+++.|...+|.... ..+.|...++............-....++++.+.++++.++-...+.|...++........
T Consensus 122 P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~ 201 (266)
T d1ijqa1 122 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 201 (266)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred CCEEEEECCCCEEEEECCCCCCCEEEECCCCCCEECCCCCCCCEEEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEE
T ss_conf 33699980039488712699730268636888344120045320169986133569999528967999998999977999
Q ss_pred EEECC--CCEEEEEECCCCCEEEEEE-CCCEEEEEECCCCC
Q ss_conf 86067--5257999947999999995-79709999989983
Q 000268 621 YEISR--FRLVDGKFSPDGASIILSD-DVGQLYILNTGQGE 658 (1757)
Q Consensus 621 l~~~~--~~ItslafSPDG~~LAsgs-~DG~I~IWdl~sGe 658 (1757)
+.... .....+++. +.+|..++ .++.|+..+..+|.
T Consensus 202 ~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~ 240 (266)
T d1ijqa1 202 LEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGS 240 (266)
T ss_dssp EECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred EECCCCCCCCEEEEEE--CCEEEEEECCCCEEEEEECCCCC
T ss_conf 9389855664799998--99999998999969999998996
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.02 E-value=0.25 Score=19.89 Aligned_cols=27 Identities=7% Similarity=0.070 Sum_probs=9.8
Q ss_pred EEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf 999990399949999958992999968
Q 000268 586 YVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1757)
Q Consensus 586 tsIafSPdd~~lLaSgs~DG~IrIWDi 612 (1757)
.+|++.+.++++.++-...+.|...++
T Consensus 170 ~glaiD~~~~~lYw~d~~~~~I~~~~~ 196 (263)
T d1npea_ 170 NGLTFDAFSSQLCWVDAGTHRAECLNP 196 (263)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CEEEEEECCCEEEEEECCCCEEEEEEC
T ss_conf 307995047589999289999999999
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.72 E-value=0.4 Score=18.47 Aligned_cols=70 Identities=16% Similarity=0.267 Sum_probs=27.1
Q ss_pred ECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC-CCEEEEC
Q ss_conf 9799999999818726999926787088998067898599999579999999848966999978999-7058841
Q 000268 251 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG-LPISVLR 324 (1757)
Q Consensus 251 FSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~gHs~~VtsIafSPDg~lLASgS~DGtIrIWDl~tg-~~i~~l~ 324 (1757)
.+|..+.||.-+ ..++.|+|+++.+.++.+.-. ..|.--.|..+. .|+..+ +..|+-|+++.. .+...+.
T Consensus 70 MhP~~~IiALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~~-~L~lVT-~taVYHW~~~g~s~P~k~fd 140 (327)
T d1utca2 70 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFD 140 (327)
T ss_dssp ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEESSSS-EEEEEC-SSEEEEEESSSSCCCEEEEE
T ss_pred CCCCCCEEEEEC-CCEEEEEEHHHHHHHCEEECC-CCCEEEEECCCC-EEEEEC-CCCEEEECCCCCCCCHHHHH
T ss_conf 088875799962-886899844682211158768-885799944798-899991-88169973569998526623
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.59 E-value=0.41 Score=18.42 Aligned_cols=78 Identities=12% Similarity=0.061 Sum_probs=32.6
Q ss_pred EEEEEECCCCCEEEEE-ECCCEEEEEECCCCCEEEEEECCC--CCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEE
Q ss_conf 1299985799799999-539839999889994589980799--8849999903999499999589929999689992289
Q 000268 543 VNMIVWSLDNRFVLAA-IMDCRICVWNAADGSLVHSLTGHT--ESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIR 619 (1757)
Q Consensus 543 VtsIafSPDG~~LvSG-s~DG~I~IWDl~tgkli~tL~gH~--~~VtsIafSPdd~~lLaSgs~DG~IrIWDi~tg~~i~ 619 (1757)
.+.+++++.+..|..+ ...+.|...++........+.... ....++++. ++.+..+-..++.|...+..++....
T Consensus 166 p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~ 243 (266)
T d1ijqa1 166 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVN 243 (266)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCE
T ss_pred EEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCEEEEEE--CCEEEEEECCCCEEEEEECCCCCCEE
T ss_conf 1699861335699995289679999989999779999389855664799998--99999998999969999998996159
Q ss_pred EEE
Q ss_conf 986
Q 000268 620 IYE 622 (1757)
Q Consensus 620 ~l~ 622 (1757)
.+.
T Consensus 244 ~~~ 246 (266)
T d1ijqa1 244 LLA 246 (266)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 977
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=83.11 E-value=0.58 Score=17.38 Aligned_cols=63 Identities=6% Similarity=0.039 Sum_probs=43.0
Q ss_pred CEEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEE--------CCCCCEEEEEECCC
Q ss_conf 22689981679878999997999999998187269999267870889980--------67898599999579
Q 000268 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR--------GHEGDITDLAVSSN 296 (1757)
Q Consensus 233 ~k~i~tL~GH~~~V~sIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~--------gHs~~VtsIafSPD 296 (1757)
++......+ -..-++|+|.|+|++|++--..|.|++++..++....... .-.+....|+|+|+
T Consensus 17 f~~~~ia~~-L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 17 FDKKVILSN-LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp SCEEEEECC-CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CEEEEEECC-CCCCEEEEEECCCEEEEEEECCCEEEEEECCCCCEEECCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 379998889-99843899928990999993488799998999967561368752003688874233796799
|
| >d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: Tudor/PWWP/MBT family: Tudor domain domain: Survival motor neuron protein 1, smn species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.32 E-value=0.62 Score=17.18 Aligned_cols=56 Identities=23% Similarity=0.460 Sum_probs=40.0
Q ss_pred CCCCCCCEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 797668605884037888999569999988158999999999734699975999944335867434899
Q 000268 1564 RNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFDSD 1632 (1757)
Q Consensus 1564 ~~~~~g~rf~m~fe~e~~~~~~~~~GtI~~~~~~~p~~p~S~W~~l~V~Wd~~~~~~~rvSPWEiep~~ 1632 (1757)
+.|++|+.|...|.. ++.||.++|.++.+.. ..+.|.+..= +..+.|+.=+|.|+.
T Consensus 2 ~~wkvG~~C~A~~s~----Dg~wYRA~I~~v~~~~--------~~~~V~fvDY-Gn~e~V~~~~l~~~~ 57 (59)
T d1mhna_ 2 QQWKVGDKCSAIWSE----DGCIYPATIASIDFKR--------ETCVVVYTGY-GNREEQNLSDLLSPI 57 (59)
T ss_dssp CCCCTTCEEEEECTT----TSCEEEEEEEEEETTT--------TEEEEEETTT-TEEEEEEGGGCBCTT
T ss_pred CCCCCCCEEEEEECC----CCCEEEEEEEEECCCC--------CEEEEEEEEC-CCEEEEEHHHCCCCC
T ss_conf 768869999999887----8989899999974889--------9999999808-998998899976988
|